Citrus Sinensis ID: 001314

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100--
MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLEKVGKYLTRYLAVRQRRLLLVAKLQSEDRSMNDLDDDTVSETSSTFSGMSVYTTGSSTRKSSAASIKSTAASKARESKRQRNRGKIRPGSPGEEMALVDHLKGMSLTVGAKQELKSLVVFLVMLGEVDTARKLQDTGETFQLSQMAAIKLAEDTMSIDIINEHAHNMERYVQIVKLESQNSEAFSWRSKVFLSP
cccccEEcccccEEEEEEEccccccccEEEEEEccccccccccccccccccEEEEEEcccccEEEEEEEEccccEEEEEEEEccEEEEEEEEEEEcccccEEEEccccccEEEEEEccccEEEEEEEEEEcccccEEEEEEEccEEEEcccccccccccccccEEcccccEEEEEEEEcccccEEEEEEccccEEEEEcccccccccccccccEEEccccccccccEEEEEEEcccEEEEEEcccccccccEEccccccccccccccEEEEEEEccccccccEEEccccccEEccccccccEEEEccccccccEEEEEEEccEEEEEEcccccccccccccccccccccccEEEEEEccccccccEEEEEccccEEEEccEEEEEcccEEEEEccccccccEEEEEEEccccEEEEEccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEccccccccccccccHHHHHHHHHHcccHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHcHHHHHHHHcHHHHHHHHHHcccccHHHHHHHHHHHHccHHHHHHcccccHHHHHHHHHHHHHHHcHHcHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEcccEEEEEcccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccccccccc
ccccccEcccccEEEEEEEccccccccEEEEEEccccccccEEcccccccHEEEEEEcccccEEEEEEEcccccEEEEEEEcccEEEEEEEEEccccccEEEEEccccccEEEEEEcccEEEEEEEEEEEEcccccEEEEEEccEEEEEcccEcccccccccEEEEccccccEEEEEcccccccEEEEEEccEEEEEEEccccHHHcccccccccccccccccccccEEEEEEccccEEEEEcccccccEEEEEEEEEEEccccccccEEEEEEEEccccccccccccEEEEEEccccccEEEEEEEccccccEEEEEEEccEEEEEEccccccccccccccccccccccccEEEEEEccccccEEEEEEccccEEEEccEEEEcccEEEEEEcccccccccEEEEEEcccEEEEEEccccccccccccccccccccccccccccHHHEEEEcccEEEEEEcccccEEEEEccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccHHEEEccccHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccHcccccccccccccHHHccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHcHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHcEEEHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccHHHHHHHHHHccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEcccccccccccccccccHcHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHcccccHHHHHHHHHHHHHccccccccHEEHEEcccc
mgavlewmpsganIAAVydrksenkcpsivfyernglerssfdinEQIDSTVELLKWNCMSDLLAAVVRFeeydsvkicffsnnhwYLKYEIRYLRRdgirfmwhptkplqlICWTLDGQITTYNFIWTTAVMENstalvidgskilvtplslslmpppmylfslkfptAVTEMAFYSKSSKNCLAAILSdgclcvvdlpapdmledlegTEFVVEACISETAFGSVIHLIWLGSHLLlsvshhgprhsnyfrgatlnedglLGFYAQEIELACSEDHVQGLLTCAGwhakvstqipleGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVgltggalthddasfpsscpwmnvvsvgtngplkpllfglddggrlhvsgkivcnncssfsfysKSAGQAMSHLILATKQNLLFIVDISDILHGELALkyenfthvgnrrkeenisyINIWERGAKVIGVLHGDEAAVILQTnrgnlecmyprkLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENITETLYKKFqflslpcreefkdlpakdfkasecnKVSSVLLAIRKALEekvpespsrelcilttlarsdppALEEALERIKIIREtellgsdeprrmsypSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALnsqrdpkeflpylqelesmppllMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLglklitdpAKMEQVLEAWADHLsdvkcfedaaTTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLEKVGKYLTRYLAVRQRRLLLVAKLQSedrsmndldddtvsetsstfsgmsvyttgsstrkssAASIKSTAASKARESKrqrnrgkirpgspgeeMALVDHLKgmsltvgaKQELKSLVVFLVMLGEVDTARKLQDTGETFQLSQMAAIKLAEDTMSIDIINEHAHNMERYVQIVKLESqnseafswrskvflsp
mgavlewmpsgANIAavydrksenkCPSIVFYErnglerssfDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKicffsnnhwyLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYenfthvgnrrkeenisyINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDlpakdfkasecnkVSSVLLAIRKALeekvpespsrelcilttlarsdppalEEALERIKIiretellgsdeprrMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLEKVGKYLTRYLAVRQRRLLLVAklqsedrsmndldddtvsetsstfsgmsvyttgsstrkssaasikstaaskareskrqrnrgkirpgspgeeMALVDHLKGMSLTVGAKQELKSLVVFLVMLGEVDTARKLQDTGETFQLSQMAAIKLAEDTMSIDIINEHAHNMERYVQIVKLESqnseafswrskvflsp
MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTplslslmpppmylfslKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGshlllsvshhGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKlaqelceelqalGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLEKVGKYLTRYlavrqrrlllvaklqSEDRSMNDLDDDTVSETSSTFSGMSVYttgsstrkssaasikstaaskaRESKRQRNRGKIRPGSPGEEMALVDHLKGMSLTVGAKQELKSLVVFLVMLGEVDTARKLQDTGETFQLSQMAAIKLAEDTMSIDIINEHAHNMERYVQIVKLESQNSEAFSWRSKVFLSP
****LEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKAL***********LCILTTLA*********ALERIKIIR********************ALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLEKVGKYLTRYLAVRQRRLLLVAKL*************************************************************************VDHLKGMSLTVGAKQELKSLVVFLVMLGEVDTARKLQDTGETFQLSQMAAIKLAEDTMSIDIINEHAHNMERYVQIVKLE*****************
*GAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEG***V**ACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGA****DASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKY*NFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENITETLYKKFQFL*********************NKVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLEKVGKYLTRYLAVRQRRLLLVAKLQSEDRSMNDLDDDTVS***************************************************GEEMALVDHLKGMSLTVGAKQELKSLVVFLVMLGEVDTARKLQDTGETFQLSQMAAIK************************************WRSKVFLS*
MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLEKVGKYLTRYLAVRQRRLLLVAKLQSEDRSMNDLDDDTVSETSSTFSGMSV*************************************GSPGEEMALVDHLKGMSLTVGAKQELKSLVVFLVMLGEVDTARKLQDTGETFQLSQMAAIKLAEDTMSIDIINEHAHNMERYVQIVKLESQNS*************
***VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFT******KEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENITETLYKKFQF********************ECNKVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLG****RRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLEKVGKYLTRYLAVRQRRLLLVAKLQS*******LDDDTVSETSSTFSGMSVYTTGS******************************RPGSPGEEMALVDHLKGMSLTVGAKQELKSLVVFLVMLGEVDTARKLQDTGETFQLSQMAAIKLAEDTMSIDIINEHAHNMERYVQIVKLESQNSEAFSWRSKVFLS*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLEKVGKYLTRYLAVRQRRLLLVAKLQSEDRSMNDLDDDTVSETSSTFSGMSVYTTGSSTRKSSAASIKSTAASKARESKRQRNRGKIRPGSPGEEMALVDHLKGMSLTVGAKQELKSLVVFLVMLGEVDTARKLQDTGETFQLSQMAAIKLAEDTMSIDIINEHAHNMERYVQIVKLESQNSEAFSWRSKVFLSP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1102 2.2.26 [Sep-21-2011]
Q9FNA41319 Elongator complex protein yes no 0.990 0.827 0.636 0.0
O951631332 Elongator complex protein yes no 0.841 0.695 0.288 3e-90
Q8WND51333 Elongator complex protein yes no 0.882 0.729 0.286 3e-87
Q2TAQ11170 Putative elongator comple N/A no 0.839 0.790 0.278 6e-86
Q7TT371333 Elongator complex protein yes no 0.883 0.730 0.278 2e-84
Q8VHU41331 Elongator complex protein yes no 0.872 0.722 0.285 4e-82
Q9VGK71252 Putative elongator comple yes no 0.794 0.699 0.264 7e-64
O597041253 Elongator complex protein yes no 0.843 0.741 0.246 7e-62
Q067061349 Elongator complex protein yes no 0.450 0.368 0.275 1e-48
>sp|Q9FNA4|ELP1_ARATH Elongator complex protein 1 OS=Arabidopsis thaliana GN=ELP1 PE=1 SV=1 Back     alignment and function desciption
 Score = 1395 bits (3610), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 702/1103 (63%), Positives = 847/1103 (76%), Gaps = 12/1103 (1%)

Query: 3    AVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDST--VELLKWNCM 60
             +LEWMPSGA IAAVY RKS++  PSI F+ERNGLERSSF I E  D+T   E LKWN  
Sbjct: 226  GILEWMPSGAKIAAVYKRKSDDSSPSIAFFERNGLERSSFRIGEPEDATESCENLKWNSA 285

Query: 61   SDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQ 120
            SDLLA VV  + YD++++ FFSNNHWYLK EIRY R  G+  MW PTKPLQLICWTL GQ
Sbjct: 286  SDLLAGVVSCKTYDAIRVWFFSNNHWYLKQEIRYPREAGVTVMWDPTKPLQLICWTLSGQ 345

Query: 121  ITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKS 180
            ++  +F+W TAVME+STA VID SKILVTPLSLSLMPPPMYLFSL F +AV ++A+YS++
Sbjct: 346  VSVRHFMWVTAVMEDSTAFVIDNSKILVTPLSLSLMPPPMYLFSLSFSSAVRDIAYYSRN 405

Query: 181  SKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLS 240
            SKNCLA  LSDG L  V+ PAP+  EDLEG +F VE    +TA GS +HL+WL  H LL 
Sbjct: 406  SKNCLAVFLSDGNLSFVEFPAPNTWEDLEGKDFSVEISDCKTALGSFVHLLWLDVHSLLC 465

Query: 241  VSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEG 300
            VS +G  H+        + + L G Y QE+E+ C EDHV   +TC+G+ A ++ Q  LE 
Sbjct: 466  VSAYGSSHNKCLSSGGYDTE-LHGSYLQEVEVVCHEDHVPDQVTCSGFKASITFQTLLES 524

Query: 301  LVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTN 360
             V+A+A N +K+ SAF++F GGK+  Y SR  +     + D   FPS+CPW+ V  V  +
Sbjct: 525  PVLALAWNPSKRDSAFVEFEGGKVLGYASRSEIMETRSSDDSVCFPSTCPWVRVAQVDAS 584

Query: 361  GPLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISD 420
            G  KPL+ GLDD GRL ++GK +CNNCSSFSFYS+ A + ++HLI+ TKQ+ LFIVD  D
Sbjct: 585  GVHKPLICGLDDMGRLSINGKNLCNNCSSFSFYSELANEVVTHLIILTKQDFLFIVDTKD 644

Query: 421  ILHGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECM 480
            +L+G++AL    F   G RR EEN+SY+NIWERGAKVIGVL+GDEAAVILQT RGNLEC+
Sbjct: 645  VLNGDVALGNVFFVIDGRRRDEENMSYVNIWERGAKVIGVLNGDEAAVILQTMRGNLECI 704

Query: 481  YPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLS 540
            YPRKLVL+SI NAL Q RF+DA  +VRRHRI+FNVIVD  GWQAFLQSA  FV QVNNL+
Sbjct: 705  YPRKLVLSSITNALAQQRFKDAFNLVRRHRIDFNVIVDLYGWQAFLQSAVAFVEQVNNLN 764

Query: 541  YITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKAL 600
            ++TEFVCA+ NE++TETLYKKF F S    E F+       K S  NKVSSVL AIRKAL
Sbjct: 765  HVTEFVCAMKNEDVTETLYKKFSF-SKKGDEVFR------VKDSCSNKVSSVLQAIRKAL 817

Query: 601  EEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGS-DEPRRMSYPSAEEAL 659
            EE +PESPSRELCILTTLARSDPPA+EE+L RIK +RE ELL S D+ R+ S PSAEEAL
Sbjct: 818  EEHIPESPSRELCILTTLARSDPPAIEESLLRIKSVREMELLNSSDDIRKKSCPSAEEAL 877

Query: 660  KHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDL 719
            KHLLWL DSEAV+EAALGLYDLNLAAIVALNSQRDPKEFLPYLQELE MP  LM + ID+
Sbjct: 878  KHLLWLLDSEAVFEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELEKMPESLMHFKIDI 937

Query: 720  RLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSD 779
            +LQRF++AL++IVS G  Y  DC+NL+KK  QLFPLGL LITDP K   VLEAWADHL D
Sbjct: 938  KLQRFDSALRNIVSAGVGYFPDCMNLIKKNPQLFPLGLLLITDPEKKLVVLEAWADHLID 997

Query: 780  VKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQA 839
             K FEDAATTY CC  LEKA KAYR  G+WSGVL V  L+KLGKDE+ KLA ELCEE+ A
Sbjct: 998  EKRFEDAATTYLCCCKLEKASKAYRECGDWSGVLRVGALMKLGKDEILKLAYELCEEVNA 1057

Query: 840  LGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASS 899
            LGKP EAAKIAL+YC D++ GISLLI+AR+WEEALRVAF+H  +D I+ VK ++LECAS 
Sbjct: 1058 LGKPAEAAKIALEYCSDISGGISLLINAREWEEALRVAFLHTADDRISVVKSSALECASG 1117

Query: 900  LIGEYKEGLEKVGKYLTRYLAVRQRRLLLVAKLQSEDRSMNDLDDDTVSETSSTFSGMSV 959
            L+ E+KE +EKVGKYLTRYLAVRQRRLLL AKL+SE+RS+ DLDDDT SE SS  SGMS 
Sbjct: 1118 LVSEFKESIEKVGKYLTRYLAVRQRRLLLAAKLKSEERSVVDLDDDTASEASSNLSGMSA 1177

Query: 960  YTTGSSTRKSSAASIKSTAASKARESKRQRNRGKIRPGSPGEEMALVDHLKGMSLTVGAK 1019
            YT G+  R S+A+   S A S+AR+ +RQR  GKIR GS GEEMALVDHLKGM +T G K
Sbjct: 1178 YTLGTR-RGSAASVSSSNATSRARDLRRQRKSGKIRAGSAGEEMALVDHLKGMRMTDGGK 1236

Query: 1020 QELKSLVVFLVMLGEVDTARKLQDTGETFQLSQMAAIKLAEDTMSIDIINEHAHNMERYV 1079
            +ELKSL++ LV LGE+++A+KLQ T E FQ+SQ+AA++LA DT+S + ++E  +  ERY 
Sbjct: 1237 RELKSLLICLVTLGEMESAQKLQQTAENFQVSQVAAVELAHDTVSSESVDEEVYCFERYA 1296

Query: 1080 QIVKLESQNSEAFSWRSKVFLSP 1102
            Q  +  +++S+AFSW  KVF+SP
Sbjct: 1297 QKTRSTARDSDAFSWMLKVFISP 1319
Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling and is involved in acetylation of histones H3 and probably H4 (By similarity). Promotes organs development by modulating cell division rate. Required for auxin distribution or signaling. Prevents abscisic acid (ABA) signaling leading to stomatal closure and seedling growth inhibition. Involved in oxidative stress signaling. Prevents anthocyanins accumulation.
Arabidopsis thaliana (taxid: 3702)
>sp|O95163|ELP1_HUMAN Elongator complex protein 1 OS=Homo sapiens GN=IKBKAP PE=1 SV=3 Back     alignment and function description
>sp|Q8WND5|ELP1_RABIT Elongator complex protein 1 OS=Oryctolagus cuniculus GN=IKBKAP PE=2 SV=1 Back     alignment and function description
>sp|Q2TAQ1|ELP1_XENLA Putative elongator complex protein 1 OS=Xenopus laevis GN=ikbkap PE=2 SV=1 Back     alignment and function description
>sp|Q7TT37|ELP1_MOUSE Elongator complex protein 1 OS=Mus musculus GN=Ikbkap PE=2 SV=2 Back     alignment and function description
>sp|Q8VHU4|ELP1_RAT Elongator complex protein 1 OS=Rattus norvegicus GN=Ikbkap PE=2 SV=1 Back     alignment and function description
>sp|Q9VGK7|ELP1_DROME Putative elongator complex protein 1 OS=Drosophila melanogaster GN=Elp1 PE=1 SV=2 Back     alignment and function description
>sp|O59704|ELP1_SCHPO Elongator complex protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=iki3 PE=3 SV=1 Back     alignment and function description
>sp|Q06706|ELP1_YEAST Elongator complex protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IKI3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1102
225449591 1316 PREDICTED: elongator complex protein 1 [ 0.994 0.832 0.739 0.0
224109568 1326 predicted protein [Populus trichocarpa] 0.996 0.828 0.719 0.0
255575094 1335 conserved hypothetical protein [Ricinus 0.992 0.819 0.715 0.0
224100935 1340 predicted protein [Populus trichocarpa] 0.994 0.817 0.720 0.0
147843466 1533 hypothetical protein VITISV_010008 [Viti 0.961 0.691 0.702 0.0
449483884 1317 PREDICTED: elongator complex protein 1-l 0.994 0.832 0.665 0.0
449449974 1317 PREDICTED: elongator complex protein 1-l 0.994 0.832 0.663 0.0
297811479 1317 aba-overly sensitive 1 [Arabidopsis lyra 0.989 0.827 0.635 0.0
15240688 1319 elongator complex protein 1 [Arabidopsis 0.990 0.827 0.636 0.0
125600729 1339 hypothetical protein OsJ_24750 [Oryza sa 0.993 0.817 0.572 0.0
>gi|225449591|ref|XP_002279262.1| PREDICTED: elongator complex protein 1 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1674 bits (4335), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 816/1103 (73%), Positives = 939/1103 (85%), Gaps = 7/1103 (0%)

Query: 1    MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCM 60
            MG VL+WMPSGA IA+VYD+K EN+CP IVF+ERNGLERSSF INE  D+ VE+LKWNC 
Sbjct: 218  MGTVLDWMPSGAKIASVYDKKVENECPLIVFFERNGLERSSFSINELTDAKVEILKWNCS 277

Query: 61   SDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQ 120
            SDLLAAVVR E +DSVKI FFSNNHWYLK EIRYLR DG++FMWHPTKPLQLICWTL G+
Sbjct: 278  SDLLAAVVRSETFDSVKIWFFSNNHWYLKQEIRYLREDGVKFMWHPTKPLQLICWTLGGE 337

Query: 121  ITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKS 180
            +T  +F+W TAVMENSTALVID SKIL TPLSLSLMPPPMYLF+LKF + + ++AFY+K+
Sbjct: 338  VTVNSFVWVTAVMENSTALVIDESKILATPLSLSLMPPPMYLFNLKFSSTIRDIAFYTKN 397

Query: 181  SKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLS 240
            SKN LAA LSDGCLCV +LP  D  E+LEG E  V+A  SET FGS +HLIWL +H+LL 
Sbjct: 398  SKNLLAAFLSDGCLCVAELPPLDTWEELEGKELSVDASSSETIFGSFVHLIWLDAHILLG 457

Query: 241  VSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEG 300
            VSH G  HSNYF     ++D L G+Y QEIEL CSEDHV GL TC+GWHAK++ QIPL+G
Sbjct: 458  VSHFGFSHSNYFSQTPSSKDMLHGYYLQEIELLCSEDHVPGLGTCSGWHAKITNQIPLDG 517

Query: 301  LVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTN 360
            LVI +APN  KK SAF+QF GGK+ EY+  +G+  GA   +D S  SSCPWM+VV VG +
Sbjct: 518  LVIGLAPNPTKKCSAFVQFDGGKVFEYIPNLGIMEGAPKTEDMSLSSSCPWMSVVPVGDS 577

Query: 361  GPLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISD 420
            G  +PLLFGLDD GRLHV GKI+CNNC SFSFYS SA  A++HLILATKQ+LLF++DI D
Sbjct: 578  GSSRPLLFGLDDNGRLHVGGKIICNNCRSFSFYSNSADLAITHLILATKQDLLFVIDIDD 637

Query: 421  ILHGELALKYENFTHVGNRRKEE-NISYINIWERGAKVIGVLHGDEAAVILQTNRGNLEC 479
            IL G+L +KYENF H GN+R+EE N ++I IWERGAKVIGVLHGDEAAVILQT RGNLEC
Sbjct: 638  ILDGKLEVKYENFIHAGNKRREEDNRNFITIWERGAKVIGVLHGDEAAVILQTARGNLEC 697

Query: 480  MYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNL 539
            +YPRKLVL SI+NAL+Q RFRD L+MVRRHRI+FNVIVDHCGWQAFLQSA+EFVRQVNNL
Sbjct: 698  IYPRKLVLASIINALVQSRFRDGLLMVRRHRIDFNVIVDHCGWQAFLQSAAEFVRQVNNL 757

Query: 540  SYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKA-SECNKVSSVLLAIRK 598
            SYITEFVC+I NE ITETLYK   ++SL C  E KD+ A DFK  +  NKVSSVL++IRK
Sbjct: 758  SYITEFVCSIKNETITETLYK--NYISLLCLREAKDVQAGDFKGPNNNNKVSSVLMSIRK 815

Query: 599  ALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEA 658
            ALEE+VPESP+RELCILTTLARSDPPALEEALERIK+IRE ELLGSD+PRR SYPSAEEA
Sbjct: 816  ALEEQVPESPARELCILTTLARSDPPALEEALERIKLIREMELLGSDDPRRKSYPSAEEA 875

Query: 659  LKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTID 718
            LKHLLWL+DSEAVYEA+LGLYDL+LAAIVALNSQRDPKEFLP+LQELE MP  LMRY ID
Sbjct: 876  LKHLLWLSDSEAVYEASLGLYDLHLAAIVALNSQRDPKEFLPFLQELERMPVHLMRYNID 935

Query: 719  LRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLS 778
            +RL+R+E+ALKHI S GD+Y+ADCLNLMK+  QLFPLGL+LITDPAK ++VLEAW DH S
Sbjct: 936  IRLRRYESALKHIASAGDAYYADCLNLMKENPQLFPLGLQLITDPAKKKEVLEAWGDHFS 995

Query: 779  DVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQ 838
            D KCFEDAATTY CCS LEKA+KAYRA GNW GV+TVAGLLKLGK+E+ +LA ELCEELQ
Sbjct: 996  DEKCFEDAATTYLCCSGLEKALKAYRACGNWGGVMTVAGLLKLGKEEIVQLANELCEELQ 1055

Query: 839  ALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECAS 898
            ALGKPGEAAKIALDYCGDV + I+LL+ ARDWEEALRVAFMHR +DLI++V++ASLECA+
Sbjct: 1056 ALGKPGEAAKIALDYCGDVKSAINLLVSARDWEEALRVAFMHRCDDLISEVQNASLECAT 1115

Query: 899  SLIGEYKEGLEKVGKYLTRYLAVRQRRLLLVAKLQSEDRSMNDLDDDTVSETSSTFSGMS 958
             LIGEY+EGLEKVGKYL RYLAVRQRRLLL AKLQSEDRS+NDLDDDT SE SS+FSGMS
Sbjct: 1116 LLIGEYEEGLEKVGKYLARYLAVRQRRLLLAAKLQSEDRSINDLDDDTASEASSSFSGMS 1175

Query: 959  VYTTGSSTRKSSAASIKSTAASKARESKRQRNRGKIRPGSPGEEMALVDHLKGMSLTVGA 1018
             YTTG  TRK SAASI S+ ASK R  +RQRNRGKIR GSPGEEMALV+HLKGM LT GA
Sbjct: 1176 AYTTG--TRKGSAASISSSTASKGRGMRRQRNRGKIRAGSPGEEMALVEHLKGMYLTPGA 1233

Query: 1019 KQELKSLVVFLVMLGEVDTARKLQDTGETFQLSQMAAIKLAEDTMSIDIINEHAHNMERY 1078
            ++ELKSL+V LV+LG+ + A+KLQ TGE FQLSQMAA+KLAEDTM  D I+E+A+ +E Y
Sbjct: 1234 ERELKSLLVSLVVLGKEEMAKKLQRTGEAFQLSQMAAVKLAEDTMPNDNIDEYAYTLENY 1293

Query: 1079 VQIVKLESQNSEAFSWRSKVFLS 1101
            +Q ++ E Q S+AF WRSKV LS
Sbjct: 1294 IQKLRNE-QQSDAFVWRSKVLLS 1315

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224109568|ref|XP_002315239.1| predicted protein [Populus trichocarpa] gi|222864279|gb|EEF01410.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255575094|ref|XP_002528452.1| conserved hypothetical protein [Ricinus communis] gi|223532128|gb|EEF33935.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224100935|ref|XP_002312075.1| predicted protein [Populus trichocarpa] gi|222851895|gb|EEE89442.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147843466|emb|CAN82069.1| hypothetical protein VITISV_010008 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449483884|ref|XP_004156721.1| PREDICTED: elongator complex protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449449974|ref|XP_004142739.1| PREDICTED: elongator complex protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297811479|ref|XP_002873623.1| aba-overly sensitive 1 [Arabidopsis lyrata subsp. lyrata] gi|297319460|gb|EFH49882.1| aba-overly sensitive 1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15240688|ref|NP_196872.1| elongator complex protein 1 [Arabidopsis thaliana] gi|75171810|sp|Q9FNA4.1|ELP1_ARATH RecName: Full=Elongator complex protein 1; Short=AtELP1; AltName: Full=Elongator component 1; AltName: Full=Protein ABA-OVERLY SENSITIVE 1; AltName: Full=Protein ELONGATA 2 gi|9758034|dbj|BAB08695.1| unnamed protein product [Arabidopsis thaliana] gi|332004544|gb|AED91927.1| elongator complex protein 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|125600729|gb|EAZ40305.1| hypothetical protein OsJ_24750 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1102
TAIR|locus:21731991319 ABO1 "ABA-OVERLY SENSITIVE 1" 0.989 0.826 0.590 0.0
UNIPROTKB|F1SP271342 IKBKAP "Uncharacterized protei 0.404 0.332 0.302 1.7e-77
UNIPROTKB|O951631332 IKBKAP "Elongator complex prot 0.407 0.337 0.299 6.4e-75
UNIPROTKB|Q8WND51333 IKBKAP "Elongator complex prot 0.404 0.334 0.288 1.3e-70
MGI|MGI:19145441333 Ikbkap "inhibitor of kappa lig 0.407 0.336 0.304 3.4e-70
UNIPROTKB|E1BBQ31191 LOC505465 "Uncharacterized pro 0.328 0.303 0.312 7.2e-69
RGD|6200721331 Ikbkap "inhibitor of kappa lig 0.403 0.334 0.302 7.6e-66
UNIPROTKB|F5H2T0983 IKBKAP "Elongator complex prot 0.407 0.456 0.299 6.1e-65
DICTYBASE|DDB_G02840751390 elp1 "elongation protein 1" [D 0.501 0.397 0.284 4.9e-62
SGD|S0000043761349 IKI3 "Subunit of Elongator com 0.480 0.392 0.273 3.4e-58
TAIR|locus:2173199 ABO1 "ABA-OVERLY SENSITIVE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3230 (1142.1 bits), Expect = 0., P = 0.
 Identities = 651/1102 (59%), Positives = 789/1102 (71%)

Query:     4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDST--VELLKWNCMS 61
             +LEWMPSGA IAAVY RKS++  PSI F+ERNGLERSSF I E  D+T   E LKWN  S
Sbjct:   227 ILEWMPSGAKIAAVYKRKSDDSSPSIAFFERNGLERSSFRIGEPEDATESCENLKWNSAS 286

Query:    62 DLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQI 121
             DLLA VV  + YD++++ FFSNNHWYLK EIRY R  G+  MW PTKPLQLICWTL GQ+
Sbjct:   287 DLLAGVVSCKTYDAIRVWFFSNNHWYLKQEIRYPREAGVTVMWDPTKPLQLICWTLSGQV 346

Query:   122 TTYNFIWTTAVMENSTALVIDGSKILVTXXXXXXXXXXXXXXXXKFPTAVTEMAFYSKSS 181
             +  +F+W TAVME+STA VID SKILVT                 F +AV ++A+YS++S
Sbjct:   347 SVRHFMWVTAVMEDSTAFVIDNSKILVTPLSLSLMPPPMYLFSLSFSSAVRDIAYYSRNS 406

Query:   182 KNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGXXXXXXX 241
             KNCLA  LSDG L  V+ PAP+  EDLEG +F VE    +TA GS +HL+WL        
Sbjct:   407 KNCLAVFLSDGNLSFVEFPAPNTWEDLEGKDFSVEISDCKTALGSFVHLLWLDVHSLLCV 466

Query:   242 XXXGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGL 301
                G  H+        + + L G Y QE+E+ C EDHV   +TC+G+ A ++ Q  LE  
Sbjct:   467 SAYGSSHNKCLSSGGYDTE-LHGSYLQEVEVVCHEDHVPDQVTCSGFKASITFQTLLESP 525

Query:   302 VIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNG 361
             V+A+A N +K+ SAF++F GGK+  Y SR  +     + D   FPS+CPW+ V  V  +G
Sbjct:   526 VLALAWNPSKRDSAFVEFEGGKVLGYASRSEIMETRSSDDSVCFPSTCPWVRVAQVDASG 585

Query:   362 PLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDI 421
               KPL+ GLDD GRL ++GK +CNNCSSFSFYS+ A + ++HLI+ TKQ+ LFIVD  D+
Sbjct:   586 VHKPLICGLDDMGRLSINGKNLCNNCSSFSFYSELANEVVTHLIILTKQDFLFIVDTKDV 645

Query:   422 LHGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMY 481
             L+G++AL    F   G RR EEN+SY+NIWERGAKVIGVL+GDEAAVILQT RGNLEC+Y
Sbjct:   646 LNGDVALGNVFFVIDGRRRDEENMSYVNIWERGAKVIGVLNGDEAAVILQTMRGNLECIY 705

Query:   482 PRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSY 541
             PRKLVL+SI NAL Q RF+DA  +VRRHRI+FNVIVD  GWQAFLQSA  FV QVNNL++
Sbjct:   706 PRKLVLSSITNALAQQRFKDAFNLVRRHRIDFNVIVDLYGWQAFLQSAVAFVEQVNNLNH 765

Query:   542 ITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALE 601
             +TEFVCA+ NE++TETLYKKF F S    E F+    KD   S  NKVSSVL AIRKALE
Sbjct:   766 VTEFVCAMKNEDVTETLYKKFSF-SKKGDEVFR---VKD---SCSNKVSSVLQAIRKALE 818

Query:   602 EKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGS-DEPRRMSYPSAEEALK 660
             E +PESPSRELCILTTLARSDPPA+EE+L RIK +RE ELL S D+ R+ S PSAEEALK
Sbjct:   819 EHIPESPSRELCILTTLARSDPPAIEESLLRIKSVREMELLNSSDDIRKKSCPSAEEALK 878

Query:   661 HLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLR 720
             HLLWL DSEAV+EAALGLYDLNLAAIVALNSQRDPKEFLPYLQELE MP  LM + ID++
Sbjct:   879 HLLWLLDSEAVFEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELEKMPESLMHFKIDIK 938

Query:   721 LQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDV 780
             LQRF++AL++IVS G  Y  DC+NL+KK  QLFPLGL LITDP K   VLEAWADHL D 
Sbjct:   939 LQRFDSALRNIVSAGVGYFPDCMNLIKKNPQLFPLGLLLITDPEKKLVVLEAWADHLIDE 998

Query:   781 KCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKXXXXXXXXXXXX 840
             K FEDAATTY CC  LEKA KAYR  G+WSGVL V  L+KLGKDE+ K            
Sbjct:   999 KRFEDAATTYLCCCKLEKASKAYRECGDWSGVLRVGALMKLGKDEILKLAYELCEEVNAL 1058

Query:   841 GKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSL 900
             GKP EAAKIAL+YC D++ GISLLI+AR+WEEALRVAF+H  +D I+ VK ++LECAS L
Sbjct:  1059 GKPAEAAKIALEYCSDISGGISLLINAREWEEALRVAFLHTADDRISVVKSSALECASGL 1118

Query:   901 IGEYKEGLEKVGKYLTRYXXXXXXXXXXXXXXXSEDRSMNDLDDDTVSETSSTFSGMSVY 960
             + E+KE +EKVGKYLTRY               SE+RS+ DLDDDT SE SS  SGMS Y
Sbjct:  1119 VSEFKESIEKVGKYLTRYLAVRQRRLLLAAKLKSEERSVVDLDDDTASEASSNLSGMSAY 1178

Query:   961 XXXXXXXXXXXXXXXXXXXXXXRESKRQRNRGKIRPGSPGEEMALVDHLKGMSLTVGAKQ 1020
                                   R+ +RQR  GKIR GS GEEMALVDHLKGM +T G K+
Sbjct:  1179 TLGTRRGSAASVSSSNATSRA-RDLRRQRKSGKIRAGSAGEEMALVDHLKGMRMTDGGKR 1237

Query:  1021 ELKSLVVFLVMLGEVDTARKLQDTGETFQLSQMAAIKLAEDTMSIDIINEHAHNMERYVQ 1080
             ELKSL++ LV LGE+++A+KLQ T E FQ+SQ+AA++LA DT+S + ++E  +  ERY Q
Sbjct:  1238 ELKSLLICLVTLGEMESAQKLQQTAENFQVSQVAAVELAHDTVSSESVDEEVYCFERYAQ 1297

Query:  1081 IVKLESQNSEAFSWRSKVFLSP 1102
               +  +++S+AFSW  KVF+SP
Sbjct:  1298 KTRSTARDSDAFSWMLKVFISP 1319
GO:0005634 "nucleus" evidence=ISM
GO:0032784 "regulation of DNA-dependent transcription, elongation" evidence=ISS
GO:0008283 "cell proliferation" evidence=IMP
GO:0035265 "organ growth" evidence=IMP
GO:0009787 "regulation of abscisic acid mediated signaling pathway" evidence=IMP
GO:0071215 "cellular response to abscisic acid stimulus" evidence=IMP
GO:0006979 "response to oxidative stress" evidence=IMP
GO:0008284 "positive regulation of cell proliferation" evidence=IMP
GO:0009737 "response to abscisic acid stimulus" evidence=IMP
GO:0031538 "negative regulation of anthocyanin metabolic process" evidence=IMP
GO:2000024 "regulation of leaf development" evidence=IMP
GO:0010928 "regulation of auxin mediated signaling pathway" evidence=IMP
GO:0033588 "Elongator holoenzyme complex" evidence=IDA
GO:0006400 "tRNA modification" evidence=IMP
GO:0009965 "leaf morphogenesis" evidence=IMP
GO:0048530 "fruit morphogenesis" evidence=IMP
GO:0080178 "5-carbamoylmethyluridine metabolic process" evidence=IMP
GO:0005829 "cytosol" evidence=IDA
GO:0006312 "mitotic recombination" evidence=RCA
GO:0009560 "embryo sac egg cell differentiation" evidence=RCA
UNIPROTKB|F1SP27 IKBKAP "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|O95163 IKBKAP "Elongator complex protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q8WND5 IKBKAP "Elongator complex protein 1" [Oryctolagus cuniculus (taxid:9986)] Back     alignment and assigned GO terms
MGI|MGI:1914544 Ikbkap "inhibitor of kappa light polypeptide enhancer in B cells, kinase complex-associated protein" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1BBQ3 LOC505465 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|620072 Ikbkap "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F5H2T0 IKBKAP "Elongator complex protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0284075 elp1 "elongation protein 1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
SGD|S000004376 IKI3 "Subunit of Elongator complex" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FNA4ELP1_ARATHNo assigned EC number0.63640.99000.8271yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1102
pfam04762903 pfam04762, IKI3, IKI3 family 0.0
COG52901243 COG5290, COG5290, IkappaB kinase complex, IKAP com 1e-74
>gnl|CDD|218251 pfam04762, IKI3, IKI3 family Back     alignment and domain information 
 Score =  613 bits (1584), Expect = 0.0
 Identities = 249/744 (33%), Positives = 363/744 (48%), Gaps = 101/744 (13%)

Query: 5   LEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLL 64
           L W PSG  IA++           +VF+ERNGL    F +    +  V  L+WN  S++L
Sbjct: 248 LSWRPSGNLIASIQRLP---DRLDVVFFERNGLRHGEFTLRLPEEEKVISLEWNSDSEVL 304

Query: 65  AAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITT 123
           A  V  E  D V++    N HWYLK E+R+    G   F W P KPL L   T  GQI  
Sbjct: 305 A--VSLE--DRVQLWTTGNYHWYLKQELRFPESAGVAFFKWDPEKPLTLHVLTESGQILI 360

Query: 124 YNFIWTTAVME------NSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFY 177
            +F WT A         N T  VIDGS +L+TPL L+ +PPPM    L+ P+ + ++AF 
Sbjct: 361 VDFAWTVARSPTLSPNDNGTVAVIDGSTLLLTPLRLANVPPPMSARELELPSNINDVAFS 420

Query: 178 SKSSKNCLAAILSDGCLCVVDLPAPDMLE------DLEGTEFVVEACISETAFGSVIHLI 231
             +S  C+A + SDG + + +L               + +   VE   SE A GS+  L 
Sbjct: 421 KSNS--CVAVLTSDGDISIYELSLKKRKPGSPPKLTSKFSLDKVENSDSEVALGSLRQLA 478

Query: 232 WLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAK 291
           +L    LL +       +                   EI L   +D    L         
Sbjct: 479 FLNDSELLVL-SDSDNIT-------------------EIVLVDVDDTENPL--------S 510

Query: 292 VSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPW 351
           VS    +EG+V+ ++ N+ K    +++   GK+   +S      G L   +  FP  C W
Sbjct: 511 VSVITEIEGIVLILSSNDYKH--VYIETRDGKVLS-LS----AEGEL--SEIGFPQLCRW 561

Query: 352 MNVVSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQN 411
             VV +G +  L    FGL D G+L+ +G+++ +N +SF           SHL+  T Q+
Sbjct: 562 FRVVQIGNDERL---AFGLTDNGKLYANGRLLASNVTSFLVTD-------SHLLFTTAQH 611

Query: 412 LLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQ 471
           LL  V ++                  +   +E        ERG++++ V+    A+V+LQ
Sbjct: 612 LLKFVHLTSEDLLVPL---------DDPEIDERC---RSIERGSRLVTVVPSK-ASVVLQ 658

Query: 472 TNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASE 531
             RGNLE +YPR LVL  I   L   R+++A +  R HRI+ N++ D+   + FL +   
Sbjct: 659 MPRGNLETIYPRALVLAGIRKLLDAKRYKEAFLTCRTHRIDLNILHDY-DPELFLDNVEL 717

Query: 532 FVRQVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSS 591
           FV QVN + Y+  F+ ++  E++T+T+YK     S P  +  K    KD      +KV+ 
Sbjct: 718 FVDQVNKVDYLDLFLSSLREEDVTKTMYKDTLKASDPPGQSKKSGDPKD------SKVNR 771

Query: 592 VLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMS 651
           +  AI  ALE K        L ILT     +PP LE+AL+ I  +RE             
Sbjct: 772 ICDAILAALE-KPKYKDKYLLNILTAYVCKNPPDLEDALQLIAELRE-----------ED 819

Query: 652 YPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPL 711
              AEEALKHL +L D   +Y+ ALGLYDL LA +VA  SQ+DPKE+LP+LQEL+ MP L
Sbjct: 820 SEQAEEALKHLCFLVDVNKLYDVALGLYDLKLALLVAQKSQKDPKEYLPFLQELQKMPEL 879

Query: 712 LMRYTIDLRLQRFENALKHIVSMG 735
             ++TID  L+R+E ALKH+ ++G
Sbjct: 880 RRKFTIDDYLKRYEKALKHLSALG 903

Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation. This region contains WD40 like repeats. Length = 903
>gnl|CDD|227610 COG5290, COG5290, IkappaB kinase complex, IKAP component [Transcription] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1102
KOG19201265 consensus IkappaB kinase complex, IKAP component [ 100.0
PF04762928 IKI3: IKI3 family; InterPro: IPR006849 Members of 100.0
COG52901243 IkappaB kinase complex, IKAP component [Transcript 100.0
KOG20411189 consensus WD40 repeat protein [General function pr 99.89
KOG3616 1636 consensus Selective LIM binding factor [Transcript 99.82
KOG15381081 consensus Uncharacterized conserved protein WDR10, 99.78
KOG19201265 consensus IkappaB kinase complex, IKAP component [ 99.57
KOG3616 1636 consensus Selective LIM binding factor [Transcript 99.5
KOG2247615 consensus WD40 repeat-containing protein [General 98.78
KOG3617 1416 consensus WD40 and TPR repeat-containing protein [ 98.7
COG52901243 IkappaB kinase complex, IKAP component [Transcript 98.64
PF04762928 IKI3: IKI3 family; InterPro: IPR006849 Members of 98.5
KOG15381081 consensus Uncharacterized conserved protein WDR10, 98.41
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 98.05
KOG0318603 consensus WD40 repeat stress protein/actin interac 98.01
KOG36171416 consensus WD40 and TPR repeat-containing protein [ 97.94
KOG0276794 consensus Vesicle coat complex COPI, beta' subunit 97.88
KOG20411189 consensus WD40 repeat protein [General function pr 97.87
KOG0645312 consensus WD40 repeat protein [General function pr 97.79
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 97.77
PF08662194 eIF2A: Eukaryotic translation initiation factor eI 97.74
PLN03081697 pentatricopeptide (PPR) repeat-containing protein; 97.56
KOG2114 933 consensus Vacuolar assembly/sorting protein PEP5/V 97.56
PF08662194 eIF2A: Eukaryotic translation initiation factor eI 97.54
KOG0296399 consensus Angio-associated migratory cell protein 97.54
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 97.53
PLN032181060 maturation of RBCL 1; Provisional 97.5
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 97.49
KOG2048691 consensus WD40 repeat protein [General function pr 97.28
PLN00181793 protein SPA1-RELATED; Provisional 97.28
KOG0291893 consensus WD40-repeat-containing subunit of the 18 97.21
PRK11788389 tetratricopeptide repeat protein; Provisional 97.18
PLN00181793 protein SPA1-RELATED; Provisional 97.17
KOG0318603 consensus WD40 repeat stress protein/actin interac 97.16
KOG0772641 consensus Uncharacterized conserved protein, conta 97.12
KOG1523361 consensus Actin-related protein Arp2/3 complex, su 97.07
PRK11788389 tetratricopeptide repeat protein; Provisional 97.07
TIGR02917899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 97.02
KOG0973942 consensus Histone transcription regulator HIRA, WD 97.0
KOG0273524 consensus Beta-transducin family (WD-40 repeat) pr 97.0
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 96.96
PRK15174656 Vi polysaccharide export protein VexE; Provisional 96.96
KOG2139445 consensus WD40 repeat protein [General function pr 96.96
KOG0973942 consensus Histone transcription regulator HIRA, WD 96.94
KOG0271480 consensus Notchless-like WD40 repeat-containing pr 96.94
TIGR02917899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 96.9
KOG1332299 consensus Vesicle coat complex COPII, subunit SEC1 96.87
PLN03081697 pentatricopeptide (PPR) repeat-containing protein; 96.84
PLN03077857 Protein ECB2; Provisional 96.83
KOG0547606 consensus Translocase of outer mitochondrial membr 96.83
PTZ00421493 coronin; Provisional 96.73
PRK10049 765 pgaA outer membrane protein PgaA; Provisional 96.72
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 96.71
KOG0645312 consensus WD40 repeat protein [General function pr 96.7
PF12234631 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 96.63
PRK01742429 tolB translocation protein TolB; Provisional 96.62
KOG0282503 consensus mRNA splicing factor [Function unknown] 96.59
PLN032181060 maturation of RBCL 1; Provisional 96.58
KOG0293519 consensus WD40 repeat-containing protein [Function 96.56
PF04840319 Vps16_C: Vps16, C-terminal region; InterPro: IPR00 96.54
PTZ00420568 coronin; Provisional 96.52
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 96.49
KOG2247 615 consensus WD40 repeat-containing protein [General 96.42
KOG0985 1666 consensus Vesicle coat protein clathrin, heavy cha 96.38
KOG0650733 consensus WD40 repeat nucleolar protein Bop1, invo 96.35
KOG0305484 consensus Anaphase promoting complex, Cdc20, Cdh1, 96.34
KOG2055514 consensus WD40 repeat protein [General function pr 96.33
PLN03077857 Protein ECB2; Provisional 96.29
PRK15174 656 Vi polysaccharide export protein VexE; Provisional 96.26
KOG0266456 consensus WD40 repeat-containing protein [General 96.17
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 96.11
PF04841410 Vps16_N: Vps16, N-terminal region; InterPro: IPR00 96.11
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 96.08
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 96.0
KOG0264422 consensus Nucleosome remodeling factor, subunit CA 95.96
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 95.92
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 95.91
PF12931284 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_ 95.86
KOG0306888 consensus WD40-repeat-containing subunit of the 18 95.82
KOG0291893 consensus WD40-repeat-containing subunit of the 18 95.82
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 95.78
KOG1407313 consensus WD40 repeat protein [Function unknown] 95.71
KOG1063764 consensus RNA polymerase II elongator complex, sub 95.69
KOG1840508 consensus Kinesin light chain [Cytoskeleton] 95.66
PTZ00421493 coronin; Provisional 95.4
PTZ00420568 coronin; Provisional 95.34
KOG2066846 consensus Vacuolar assembly/sorting protein VPS41 95.33
KOG1524737 consensus WD40 repeat-containing protein CHE-2 [Ge 95.31
PRK05137435 tolB translocation protein TolB; Provisional 95.3
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 95.28
PRK03629429 tolB translocation protein TolB; Provisional 95.25
KOG1587555 consensus Cytoplasmic dynein intermediate chain [C 95.21
KOG0290364 consensus Conserved WD40 repeat-containing protein 95.11
KOG0284464 consensus Polyadenylation factor I complex, subuni 95.05
KOG1009434 consensus Chromatin assembly complex 1 subunit B/C 95.02
KOG1274933 consensus WD40 repeat protein [General function pr 95.01
KOG2076 895 consensus RNA polymerase III transcription factor 94.98
KOG0273524 consensus Beta-transducin family (WD-40 repeat) pr 94.94
PF04097613 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 94.89
KOG0305484 consensus Anaphase promoting complex, Cdc20, Cdh1, 94.89
KOG1586288 consensus Protein required for fusion of vesicles 94.89
KOG1407313 consensus WD40 repeat protein [Function unknown] 94.8
KOG4626 966 consensus O-linked N-acetylglucosamine transferase 94.78
KOG4626 966 consensus O-linked N-acetylglucosamine transferase 94.78
KOG1274933 consensus WD40 repeat protein [General function pr 94.76
KOG1273405 consensus WD40 repeat protein [General function pr 94.71
PRK02889427 tolB translocation protein TolB; Provisional 94.7
PRK04922433 tolB translocation protein TolB; Provisional 94.69
KOG0307 1049 consensus Vesicle coat complex COPII, subunit SEC3 94.47
COG2956389 Predicted N-acetylglucosaminyl transferase [Carboh 94.35
KOG1064 2439 consensus RAVE (regulator of V-ATPase assembly) co 94.29
KOG1524737 consensus WD40 repeat-containing protein CHE-2 [Ge 94.26
KOG0772641 consensus Uncharacterized conserved protein, conta 94.09
KOG2003840 consensus TPR repeat-containing protein [General f 94.01
KOG2315566 consensus Predicted translation initiation factor 93.92
PF15492282 Nbas_N: Neuroblastoma-amplified sequence, N termin 93.87
KOG2376 652 consensus Signal recognition particle, subunit Srp 93.84
KOG0302440 consensus Ribosome Assembly protein [General funct 93.73
KOG0295406 consensus WD40 repeat-containing protein [Function 93.55
PRK10049 765 pgaA outer membrane protein PgaA; Provisional 93.54
KOG0264422 consensus Nucleosome remodeling factor, subunit CA 93.54
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 93.54
TIGR02800417 propeller_TolB tol-pal system beta propeller repea 93.49
KOG1155559 consensus Anaphase-promoting complex (APC), Cdc23 93.48
PRK14574 822 hmsH outer membrane protein; Provisional 93.43
KOG1840508 consensus Kinesin light chain [Cytoskeleton] 93.36
COG3063250 PilF Tfp pilus assembly protein PilF [Cell motilit 93.35
KOG0266456 consensus WD40 repeat-containing protein [General 93.27
KOG0315311 consensus G-protein beta subunit-like protein (con 93.19
KOG2003840 consensus TPR repeat-containing protein [General f 93.13
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 93.08
KOG2110391 consensus Uncharacterized conserved protein, conta 93.0
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 92.83
PRK09782987 bacteriophage N4 receptor, outer membrane subunit; 92.83
KOG2139445 consensus WD40 repeat protein [General function pr 92.78
TIGR00540409 hemY_coli hemY protein. This is an uncharacterized 92.77
KOG4378673 consensus Nuclear protein COP1 [Signal transductio 92.77
KOG20021018 consensus TPR-containing nuclear phosphoprotein th 92.76
KOG0279315 consensus G protein beta subunit-like protein [Sig 92.71
PRK04792448 tolB translocation protein TolB; Provisional 92.6
KOG0315311 consensus G-protein beta subunit-like protein (con 92.58
PRK10747398 putative protoheme IX biogenesis protein; Provisio 92.57
PRK12370553 invasion protein regulator; Provisional 92.55
KOG20021018 consensus TPR-containing nuclear phosphoprotein th 92.5
KOG0319775 consensus WD40-repeat-containing subunit of the 18 92.44
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 92.41
PRK00178430 tolB translocation protein TolB; Provisional 92.28
PRK03629429 tolB translocation protein TolB; Provisional 92.04
KOG1585308 consensus Protein required for fusion of vesicles 92.02
KOG1587555 consensus Cytoplasmic dynein intermediate chain [C 91.98
KOG0302440 consensus Ribosome Assembly protein [General funct 91.9
PRK11028330 6-phosphogluconolactonase; Provisional 91.78
PRK10747398 putative protoheme IX biogenesis protein; Provisio 91.72
PF12688120 TPR_5: Tetratrico peptide repeat 91.63
PRK01742429 tolB translocation protein TolB; Provisional 91.59
KOG2106626 consensus Uncharacterized conserved protein, conta 91.59
KOG0307 1049 consensus Vesicle coat complex COPII, subunit SEC3 91.58
KOG0647347 consensus mRNA export protein (contains WD40 repea 91.5
KOG0276794 consensus Vesicle coat complex COPI, beta' subunit 91.4
KOG0985 1666 consensus Vesicle coat protein clathrin, heavy cha 91.34
KOG2114 933 consensus Vacuolar assembly/sorting protein PEP5/V 91.16
KOG0278334 consensus Serine/threonine kinase receptor-associa 91.12
KOG4378673 consensus Nuclear protein COP1 [Signal transductio 91.06
KOG1585308 consensus Protein required for fusion of vesicles 91.05
PF12931284 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_ 90.97
PF04097613 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 90.92
KOG2055514 consensus WD40 repeat protein [General function pr 90.82
KOG2168835 consensus Cullins [Cell cycle control, cell divisi 90.72
PRK01029428 tolB translocation protein TolB; Provisional 90.62
KOG2047 835 consensus mRNA splicing factor [RNA processing and 90.54
KOG2034 911 consensus Vacuolar sorting protein PEP3/VPS18 [Int 90.46
KOG1126638 consensus DNA-binding cell division cycle control 90.39
PRK11028330 6-phosphogluconolactonase; Provisional 90.34
COG2956389 Predicted N-acetylglucosaminyl transferase [Carboh 90.18
KOG2111346 consensus Uncharacterized conserved protein, conta 90.13
PRK12370553 invasion protein regulator; Provisional 90.09
PRK04922433 tolB translocation protein TolB; Provisional 90.07
KOG0292 1202 consensus Vesicle coat complex COPI, alpha subunit 90.0
TIGR03302235 OM_YfiO outer membrane assembly lipoprotein YfiO. 89.96
PRK00178430 tolB translocation protein TolB; Provisional 89.96
PRK04792448 tolB translocation protein TolB; Provisional 89.92
TIGR02800417 propeller_TolB tol-pal system beta propeller repea 89.85
KOG0316307 consensus Conserved WD40 repeat-containing protein 89.75
PRK15179 694 Vi polysaccharide biosynthesis protein TviE; Provi 89.62
KOG1586288 consensus Protein required for fusion of vesicles 89.37
PRK09782 987 bacteriophage N4 receptor, outer membrane subunit; 89.23
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 89.07
PF09295395 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter 89.04
PF12569517 NARP1: NMDA receptor-regulated protein 1 ; InterPr 89.03
KOG1036323 consensus Mitotic spindle checkpoint protein BUB3, 88.87
PF11768545 DUF3312: Protein of unknown function (DUF3312); In 88.73
KOG0650733 consensus WD40 repeat nucleolar protein Bop1, invo 88.49
KOG1523361 consensus Actin-related protein Arp2/3 complex, su 88.28
PF15390671 DUF4613: Domain of unknown function (DUF4613) 88.14
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 88.0
KOG0269839 consensus WD40 repeat-containing protein [Function 87.9
COG3071400 HemY Uncharacterized enzyme of heme biosynthesis [ 87.79
KOG2445361 consensus Nuclear pore complex component (sc Seh1) 87.65
KOG0310487 consensus Conserved WD40 repeat-containing protein 87.52
COG2909 894 MalT ATP-dependent transcriptional regulator [Tran 87.46
PRK14720 906 transcript cleavage factor/unknown domain fusion p 87.46
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 87.25
KOG0284464 consensus Polyadenylation factor I complex, subuni 87.09
PRK05137435 tolB translocation protein TolB; Provisional 86.88
KOG1036323 consensus Mitotic spindle checkpoint protein BUB3, 86.77
PRK02889427 tolB translocation protein TolB; Provisional 86.7
KOG0647347 consensus mRNA export protein (contains WD40 repea 86.61
COG4783484 Putative Zn-dependent protease, contains TPR repea 86.46
PRK01029428 tolB translocation protein TolB; Provisional 86.41
KOG14451012 consensus Tumor-specific antigen (contains WD repe 86.4
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 86.3
smart00299140 CLH Clathrin heavy chain repeat homology. 86.26
KOG0275508 consensus Conserved WD40 repeat-containing protein 85.99
KOG1273405 consensus WD40 repeat protein [General function pr 85.92
KOG4283397 consensus Transcription-coupled repair protein CSA 85.58
PF12688120 TPR_5: Tetratrico peptide repeat 85.48
KOG1332299 consensus Vesicle coat complex COPII, subunit SEC1 85.0
KOG0272459 consensus U4/U6 small nuclear ribonucleoprotein Pr 84.88
KOG2314698 consensus Translation initiation factor 3, subunit 84.84
KOG0271480 consensus Notchless-like WD40 repeat-containing pr 84.83
KOG2110391 consensus Uncharacterized conserved protein, conta 84.77
KOG2394636 consensus WD40 protein DMR-N9 [General function pr 84.58
TIGR03302235 OM_YfiO outer membrane assembly lipoprotein YfiO. 84.48
KOG0270463 consensus WD40 repeat-containing protein [Function 84.3
KOG1063764 consensus RNA polymerase II elongator complex, sub 84.26
KOG1539910 consensus WD repeat protein [General function pred 84.1
KOG1156700 consensus N-terminal acetyltransferase [Chromatin 83.94
PRK15359144 type III secretion system chaperone protein SscB; 83.81
PF1289447 Apc4_WD40: Anaphase-promoting complex subunit 4 WD 83.19
KOG2376 652 consensus Signal recognition particle, subunit Srp 83.15
COG3063250 PilF Tfp pilus assembly protein PilF [Cell motilit 83.08
PRK11189296 lipoprotein NlpI; Provisional 82.78
PF12234631 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 82.68
KOG0294362 consensus WD40 repeat-containing protein [Function 82.59
PRK10803263 tol-pal system protein YbgF; Provisional 82.25
KOG4497447 consensus Uncharacterized conserved protein WDR8, 82.1
KOG2048691 consensus WD40 repeat protein [General function pr 82.1
COG3071400 HemY Uncharacterized enzyme of heme biosynthesis [ 82.04
PF10602177 RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 81.94
TIGR02552135 LcrH_SycD type III secretion low calcium response 81.73
KOG2096420 consensus WD40 repeat protein [General function pr 81.68
PRK15363157 pathogenicity island 2 chaperone protein SscA; Pro 81.59
KOG2280829 consensus Vacuolar assembly/sorting protein VPS16 81.47
KOG0321720 consensus WD40 repeat-containing protein L2DTL [Fu 81.25
KOG1155559 consensus Anaphase-promoting complex (APC), Cdc23 81.11
PF04733290 Coatomer_E: Coatomer epsilon subunit; InterPro: IP 80.89
PRK02603172 photosystem I assembly protein Ycf3; Provisional 80.68
TIGR00540409 hemY_coli hemY protein. This is an uncharacterized 80.52
KOG1963792 consensus WD40 repeat protein [General function pr 80.4
KOG1174564 consensus Anaphase-promoting complex (APC), subuni 80.23
KOG2111346 consensus Uncharacterized conserved protein, conta 80.19
KOG2314698 consensus Translation initiation factor 3, subunit 80.04
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=7.7e-206  Score=1828.32  Aligned_cols=1010  Identities=34%  Similarity=0.483  Sum_probs=847.4

Q ss_pred             CCCceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccc-eeeeeecCCCCeEEEEEeeCCCCeEEEE
Q 001314            1 MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDST-VELLKWNCMSDLLAAVVRFEEYDSVKIC   79 (1102)
Q Consensus         1 le~~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~-v~~L~Wn~DS~iLAv~~~~~~~~~vqLW   79 (1102)
                      |+++|+|||||++||++|+++   ++.+|+||||||||||+|+||.|.++. |.+|+||+||+||||++.+.+.+.||||
T Consensus       243 l~~~LsWkPsgs~iA~iq~~~---sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lw  319 (1265)
T KOG1920|consen  243 LQHSLSWKPSGSLIAAIQCKT---SDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLW  319 (1265)
T ss_pred             cccceeecCCCCeEeeeeecC---CCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEE
Confidence            579999999999999999886   345999999999999999999988766 9999999999999999988888999999


Q ss_pred             EcccceEEEEEEEEeccCCCceEEecCCCCceEEEEeeCCcEEEEEEEEeeee--cCCcEEEEEeCCeEEeccCCCCCCC
Q 001314           80 FFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAV--MENSTALVIDGSKILVTPLSLSLMP  157 (1102)
Q Consensus        80 t~~NYHWYLKqei~~~~~~~~~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~--~d~~~vaVIDG~~l~lTp~r~a~VP  157 (1102)
                      |+|||||||||++.|+....  ++|||++|.+|++++.+|++.+++|.|.++.  +|.|++.||||++|++|||+.+|||
T Consensus       320 t~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~~~~t~~s~~d~S~~~VIDgs~llvT~ls~~vvP  397 (1265)
T KOG1920|consen  320 TTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDFAWTTDRSPNDGSTVYVIDGSRLLVTPLSLAVVP  397 (1265)
T ss_pred             EecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEEEEeeeccCCCCceEEEEeCCEEEEecchhhcCC
Confidence            99999999999999987654  8999999999999999999999999999997  5789999999999999999999999


Q ss_pred             CcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCCCCccccccCCceeeeeeccccccCceEEEEEecCce
Q 001314          158 PPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHL  237 (1102)
Q Consensus       158 PPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  237 (1102)
                      ||||.+++.+++++ .+  .+..+.+.+.+..++.....+..+.+..++.+.++.|...........+....+.|+..+.
T Consensus       398 PPM~~y~l~~~~~~-~~--~~~~s~~~~~l~~sd~~~~~~~~~~~n~~~~~~~~~f~~f~~~~~t~~~~~~~~~~~~~~~  474 (1265)
T KOG1920|consen  398 PPMCSYSLLFDSNI-VV--MPAESKSALHLFASDIKSRWDGLDFPNSREFLKLKEFSEFIGSLVTPSGHKFYLLEFSVNE  474 (1265)
T ss_pred             CCceeeeecCCccc-ee--ecccccCchhhhhcccchhhhhccccCchhhcccccccccchhhhcCCcceEEEEEEeccc
Confidence            99999999999872 22  2334445556666776666566666666666666666521111224445666777887777


Q ss_pred             EEEEEecCCCCccceeecccccCcccccchhhhhhcccccccccccccccccceeeeeeccCCcEEEEccCCCCCce-EE
Q 001314          238 LLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYS-AF  316 (1102)
Q Consensus       238 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  316 (1102)
                      ...+..++.....+.+......  ..+..+...++.                         ++.+ .+..+. ...+ .+
T Consensus       475 ~~~v~~~~~~~~k~~~~~~~~~--~~~~~l~~~~v~-------------------------d~~~-~v~~~~-~~~h~~~  525 (1265)
T KOG1920|consen  475 DTDVNANGSNRSKIGEVGVQET--TEHHQLCQVEVY-------------------------DHCV-GVVSSY-NFEHGLF  525 (1265)
T ss_pred             ceeeecCCcchhheeeeceEEc--ccccEEEEEEEE-------------------------eccc-cchhee-eccccch
Confidence            7777666655555443221110  000111111111                         1111 111111 1222 77


Q ss_pred             EEeeCceEEEEecccc---c-CCCCccCCCCCCCCCCCceEEEEecCCCCCcceEEEEcCCcceEeCCEeeecCceeEEE
Q 001314          317 LQFHGGKISEYMSRVG---L-TGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNNCSSFSF  392 (1102)
Q Consensus       317 ~q~~~G~v~~~~~~~~---~-~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~~~gLs~~g~L~~n~~~la~n~tSF~v  392 (1102)
                      +++.+|.|+.++.+..   + ............|.+|+|..+..++.    +.+.|||++.|+|++|++.|++||+||.+
T Consensus       526 ~~~~dg~Iv~~~~~~i~k~i~~~~s~ei~~~~sp~~~~d~~~~~v~~----~~v~~glts~~~~~~n~~~l~~~~~sf~~  601 (1265)
T KOG1920|consen  526 LLAGDGVIVSLCDNGIHKGIGIAPSLEIVELKSPSPCHDGNVAFVDE----DTVEFGLTSFGRLFINQILLSSNVSSFFF  601 (1265)
T ss_pred             hhcCCceEEEcccCCccccccccccccEEEecCCccccccceeeecc----ccccccccceeEEEEeeEEeecCceEEEE
Confidence            8899999999875431   1 11222233456799999999988764    34789999999999999999999999999


Q ss_pred             ecCCccccceEEEEEecCCeEEEEEcCcccccccccccccccccCCCcccccccccccccCCCEEEEEecCCCcEEEEEc
Q 001314          393 YSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQT  472 (1102)
Q Consensus       393 ~~~~~~~~~~~Ll~TT~~h~l~fv~L~~~~~~~~~~~~~~~~~~~~~~~~~~de~~R~VERGs~lV~~vp~~~~~vVLQm  472 (1102)
                      +++       |+++||++|.|.|+++.+....+++...     ++..++  .||++|.|||||+||+++|++ ++|||||
T Consensus       602 ~se-------~~~~~t~~~~l~~~~l~~~~fd~l~~~~-----~~~~~~--~~E~vr~vErGsklVa~~~~k-a~VvLQ~  666 (1265)
T KOG1920|consen  602 YSE-------FVLFTTTSHLLQFVCLVDFDFDTLQRVE-----DDESGR--HDERVRNVERGSKLVAVVPQK-AAVVLQM  666 (1265)
T ss_pred             ehh-------hhhHHHHHhhhhhheeeeeeecchhhcc-----cccccc--cchhhhhhhhcceEEEeccch-hhHhHhh
Confidence            999       9999999999999999775433333321     111122  689999999999999999998 9999999


Q ss_pred             CCCccccccchhhhHHHHHHHHhcccHHHHHHHHHhcccccceeeccccHHHHHhhHHHHHHHcCCcchHHHHHhhccCC
Q 001314          473 NRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNE  552 (1102)
Q Consensus       473 PRGNLEtI~PR~LVL~~ir~~L~~~~Y~~Af~~~RkhRIdlNll~D~~~p~~Fl~~i~~FV~qv~~~~~lnLFls~L~~e  552 (1102)
                      |||||||||||+|||+.||.+|++++|++||.+|||||||||+|+||+ |+.|++|++.||+|+++++||||||++|++|
T Consensus       667 ~RGNLEtI~pR~lVLa~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~-~~~Fl~nv~afl~~in~~~~l~lfl~~lk~e  745 (1265)
T KOG1920|consen  667 PRGNLETIYPRILVLAKVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYD-PKRFLKNVPAFLKQINRVNHLELFLTELKEE  745 (1265)
T ss_pred             cCCCceeechhhhHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhcC-HHHHHhhHHHHhccCCcHHHHHHHHhhcccc
Confidence            999999999999999999999999999999999999999999999999 7999999999999999999999999999999


Q ss_pred             chhhhhcccccccCCCccccccCCCccccCCCCCCcHHHHHHHHHHHHhhcCCCCCCcchhhhhHhHhcCCccHHHHHHH
Q 001314          553 NITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALER  632 (1102)
Q Consensus       553 dvt~t~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~KVn~IC~air~~l~~~~~~~~~~~l~IlTa~v~k~Pp~le~aL~~  632 (1102)
                      |||+|||+.+  ....  +.     .-....+.++|||+||++||++|+++.++  +|.|+|||+|||++||.+|+||++
T Consensus       746 Dvtk~~y~~~--~~s~--k~-----~~~~r~~~d~kv~~vc~~vr~~l~~~~~~--~~~~~ilTs~vk~~~~~ie~aL~k  814 (1265)
T KOG1920|consen  746 DVTKTMYSST--SGSG--KQ-----VYMSRDPYDNKVNSVCDAVRNALERRAPD--KFNLFILTSYVKSNPPEIEEALQK  814 (1265)
T ss_pred             hhhhhhcccc--cccc--ce-----eEEeccchhhHHHHHHHHHHHHHhhcCcc--hhhHHHHHHHHhcCcHHHHHHHHH
Confidence            9999999976  2111  00     01112335799999999999999997655  689999999999999999999999


Q ss_pred             HHHHHhhhccCCCCcCCCChhhHHHHHHHHHhhcchHHHHHHHHhccCHHHHHHHHHHhcCCcchhhHHHHHHhcCChhh
Q 001314          633 IKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLL  712 (1102)
Q Consensus       633 i~~l~~~e~~~~~~~~~~~~~~ae~alk~l~fLvDvn~Ly~~ALg~YDl~Lal~VAq~sqkDPkEYLpfL~~L~~le~~~  712 (1102)
                      |+.+++..          ..+.|++||+|||||||||.|||+|||+|||+||++|||+|||||||||||||+|++||+++
T Consensus       815 I~~l~~~~----------~~~~ad~al~hll~Lvdvn~lfn~ALgtYDl~Lal~VAq~SqkDPkEyLP~L~el~~m~~~~  884 (1265)
T KOG1920|consen  815 IKELQLAQ----------VAVSADEALKHLLFLVDVNELFNSALGTYDLDLALLVAQKSQKDPKEYLPFLNELKKMETLL  884 (1265)
T ss_pred             HHHHHhcc----------cchhHHHHHHHHHhhccHHHHHHhhhcccchHHHHHHHHHhccChHHHHHHHHHHhhchhhh
Confidence            99998411          24589999999999999999999999999999999999999999999999999999999999


Q ss_pred             hchhHHHhhhcHHHHHHHHHHcCCCcHHHHHHHHHHHhcchHHHHhcc-CCcHhHHHHHHHHHHHHhcccChHHHHHHHH
Q 001314          713 MRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI-TDPAKMEQVLEAWADHLSDVKCFEDAATTYF  791 (1102)
Q Consensus       713 rr~~Id~~LkryekAl~hl~~~g~~~~deAie~~~~~~~Ly~~AL~L~-~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~  791 (1102)
                      |||.||+|||||++|+.||.++|..+|++|++|+++| +||++||.|| .|+++++.++.+||+||++.+.|++|+.+|+
T Consensus       885 rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh-~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye  963 (1265)
T KOG1920|consen  885 RKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKH-GLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYE  963 (1265)
T ss_pred             hheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhc-ccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            9999999999999999999999988999999999999 9999999999 9999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHH
Q 001314          792 CCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWE  871 (1102)
Q Consensus       792 ~ag~~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ylgD~e~AI~~y~~~~~W~  871 (1102)
                      ++|+.+||++||.+||+|++|+.+|.++..+++++..++++|+..|.++|+|.|||+|.++||+|+++|+.+||+|+.|+
T Consensus       964 ~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~ka~~~~ 1043 (1265)
T KOG1920|consen  964 RCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCKAKEWE 1043 (1265)
T ss_pred             HhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhhHhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCChhhHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccc
Q 001314          872 EALRVAFMHRREDLITK-VKHASLECASSLIGEYKEGLEKVGKYLTRYLAVRQRRLLLVAKLQSEDRSMNDLDDDTVSET  950 (1102)
Q Consensus       872 eA~rLa~~h~~~dL~et-v~~a~l~~a~~~~~el~e~~~~~~k~~~RL~~lR~~r~~~~~~~~~e~~~~~d~~~D~~Sea  950 (1102)
                      +|+|+|..+++.|++++ +.|++++......+.+++++++|.+|++||++||++|++.+..+.+++. ..|.|+|..|++
T Consensus      1044 eAlrva~~~~~~d~iee~l~~al~e~~~~~~~~L~~~k~~f~~yk~RLl~vRe~k~~~~~~~~~~ev-~~d~d~dlas~s 1122 (1265)
T KOG1920|consen 1044 EALRVASKAKRDDIIEEVLKPALLEAFGEVLEFLEDVKEQFVKYKKRLLVVRENKEKRPEAFADGEV-EHDLDDDLASES 1122 (1265)
T ss_pred             HHHHHHHhcccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhhhcccc-Cccccccccccc
Confidence            99999999999999999 5666655555555557999999999999999999999765544443332 236667888888


Q ss_pred             cccccCCceeeeccccccCCcccccchhccchhhhHHHhccCCCCCCChhhhHHHHHHHhhhc-cccchHHHHHHHHHHH
Q 001314          951 SSTFSGMSVYTTGSSTRKSSAASIKSTAASKARESKRQRNRGKIRPGSPGEEMALVDHLKGMS-LTVGAKQELKSLVVFL 1029 (1102)
Q Consensus       951 ss~~s~~S~yT~~s~t~~~s~~s~~S~~~s~~~rrr~erK~~~~k~Gs~~Eee~Lv~sl~~l~-~~~~~~~ev~~Ll~~L 1029 (1102)
                      ||+.+| |.||++   ++   .|. +|+|+.|||||.||||++|||||||||+|||++|++++ .++++++|+++||++|
T Consensus      1123 sS~~~~-s~ysG~---sr---~S~-~s~~tsKnrR~~ERKr~s~K~G~~yEd~aLl~~L~~~~~~le~~r~E~~~Ll~~l 1194 (1265)
T KOG1920|consen 1123 SSTNSG-SQYSGS---SR---SSA-ISARTSKNRRKLERKRASLKEGGPYEDEALLNALSEIARRLENIRNELKRLLEVL 1194 (1265)
T ss_pred             cccccc-ccccCC---CC---ccc-cchhhhhcchhHHHHhhccCCCCchhHHHHHHHHHHHHHHhhcccHHHHHHHHHH
Confidence            887776 655544   12   223 44788888989999999999999999999999999987 5899999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhcc-CCChHHHHHHHhhccCCccccccccccccCC
Q 001314         1030 VMLGEVDTARKLQDTGETFQLSQMAAIKLAEDTMSIDIINEH-AHNMERYVQIVKLESQNSEAFSWRSKVFLSP 1102 (1102)
Q Consensus      1030 v~~~~~e~A~~lQ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 1102 (1102)
                      +++||+++|++||++|+++.+..+.++..||.-    .+-.+ ..+-+.++|+.+.+.|+...++|..++..|+
T Consensus      1195 ~~~g~~eqa~~Lq~~f~ev~~~i~~~~~eI~~~----~~s~~~~~~gpn~~qk~~~p~~~~p~~~~~~kl~i~~ 1264 (1265)
T KOG1920|consen 1195 VTFGMDEQARALQKAFDEVLQAIQASLDEIWTV----ELSLNSHLLGPNDPQKTPRPALDSPLFSPFPKLVIPD 1264 (1265)
T ss_pred             HHcCCcHHHHHHHHHHHHHHHHHHhhhhhhcCh----hhhccccccCCcccccCcCCCCCCcccccchhhhcCC
Confidence            999999999999999999999999999999963    11112 2233448888888888999999999998875

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] Back     alignment and domain information
>COG5290 IkappaB kinase complex, IKAP component [Transcription] Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG3616 consensus Selective LIM binding factor [Transcription] Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] Back     alignment and domain information
>KOG3616 consensus Selective LIM binding factor [Transcription] Back     alignment and domain information
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>COG5290 IkappaB kinase complex, IKAP component [Transcription] Back     alignment and domain information
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0645 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins Back     alignment and domain information
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>KOG2048 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] Back     alignment and domain information
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] Back     alignment and domain information
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>PRK15174 Vi polysaccharide export protein VexE; Provisional Back     alignment and domain information
>KOG2139 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>KOG0645 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length Back     alignment and domain information
>PRK01742 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0282 consensus mRNA splicing factor [Function unknown] Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>KOG0293 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>PRK15174 Vi polysaccharide export protein VexE; Provisional Back     alignment and domain information
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C Back     alignment and domain information
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>KOG1407 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1840 consensus Kinesin light chain [Cytoskeleton] Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] Back     alignment and domain information
>PRK05137 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>PRK03629 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] Back     alignment and domain information
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] Back     alignment and domain information
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] Back     alignment and domain information
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] Back     alignment and domain information
>KOG1274 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] Back     alignment and domain information
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] Back     alignment and domain information
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex Back     alignment and domain information
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1407 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG1274 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1273 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PRK02889 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK04922 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] Back     alignment and domain information
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] Back     alignment and domain information
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] Back     alignment and domain information
>KOG2003 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal Back     alignment and domain information
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0302 consensus Ribosome Assembly protein [General function prediction only] Back     alignment and domain information
>KOG0295 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB Back     alignment and domain information
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14574 hmsH outer membrane protein; Provisional Back     alignment and domain information
>KOG1840 consensus Kinesin light chain [Cytoskeleton] Back     alignment and domain information
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG2003 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional Back     alignment and domain information
>KOG2139 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>TIGR00540 hemY_coli hemY protein Back     alignment and domain information
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] Back     alignment and domain information
>PRK04792 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>PRK10747 putative protoheme IX biogenesis protein; Provisional Back     alignment and domain information
>PRK12370 invasion protein regulator; Provisional Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>PRK00178 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK03629 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] Back     alignment and domain information
>KOG0302 consensus Ribosome Assembly protein [General function prediction only] Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>PRK10747 putative protoheme IX biogenesis protein; Provisional Back     alignment and domain information
>PF12688 TPR_5: Tetratrico peptide repeat Back     alignment and domain information
>PRK01742 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] Back     alignment and domain information
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] Back     alignment and domain information
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C Back     alignment and domain information
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK01029 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG2047 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>PRK12370 invasion protein regulator; Provisional Back     alignment and domain information
>PRK04922 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO Back     alignment and domain information
>PRK00178 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK04792 tolB translocation protein TolB; Provisional Back     alignment and domain information
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi Back     alignment and domain information
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala Back     alignment and domain information
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats Back     alignment and domain information
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] Back     alignment and domain information
>PF15390 DUF4613: Domain of unknown function (DUF4613) Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>KOG0269 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] Back     alignment and domain information
>PRK05137 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK02889 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information
>PRK01029 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>smart00299 CLH Clathrin heavy chain repeat homology Back     alignment and domain information
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1273 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PF12688 TPR_5: Tetratrico peptide repeat Back     alignment and domain information
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] Back     alignment and domain information
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO Back     alignment and domain information
>KOG0270 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1539 consensus WD repeat protein [General function prediction only] Back     alignment and domain information
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] Back     alignment and domain information
>PRK15359 type III secretion system chaperone protein SscB; Provisional Back     alignment and domain information
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain Back     alignment and domain information
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK11189 lipoprotein NlpI; Provisional Back     alignment and domain information
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length Back     alignment and domain information
>KOG0294 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PRK10803 tol-pal system protein YbgF; Provisional Back     alignment and domain information
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] Back     alignment and domain information
>KOG2048 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>KOG2096 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional Back     alignment and domain information
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] Back     alignment and domain information
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PRK02603 photosystem I assembly protein Ycf3; Provisional Back     alignment and domain information
>TIGR00540 hemY_coli hemY protein Back     alignment and domain information
>KOG1963 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1102
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-07
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 61.8 bits (149), Expect = 1e-09
 Identities = 86/625 (13%), Positives = 181/625 (28%), Gaps = 166/625 (26%)

Query: 243 HHGPRHSNYFRGAT--LNEDGLLGFYAQEI--ELACS--EDHVQGLLTCAGWHAKVSTQI 296
           HH   H ++  G      +D +L  +         C   +D  + +L+       + ++ 
Sbjct: 1   HHHHHHMDFETGEHQYQYKD-ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD 59

Query: 297 PLEG---LVIAIAPNNAKKYSAFLQ--------FHGGKIS-EYMSRVGLTGGALTHDDAS 344
            + G   L   +     +    F++        F    I  E      +T   +   D  
Sbjct: 60  AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119

Query: 345 F--PSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLHV-----SGK--IVCNNCSSFSFYSK 395
           +         NV  +     L+  L  L     + +     SGK  +  + C S+    K
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179

Query: 396 --------SAGQAMS-HLILATKQNLLFIVDISDILHGELALKYENFTHVGNRR------ 440
                   +     S   +L   Q LL+ +D +     + +   +   H           
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239

Query: 441 -KEENISYI---NIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLT---SIVNA 493
            K      +   N+    AK                   NL C   + L+ T    + + 
Sbjct: 240 SKPYENCLLVLLNVQN--AKAWNAF--------------NLSC---KILLTTRFKQVTDF 280

Query: 494 LIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASE--FVRQVN-NLSYITEFVCAIN 550
           L              H     + +DH           +   ++ ++     +   V   N
Sbjct: 281 LS--------AATTTH-----ISLDHHSM-TLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326

Query: 551 NENITETLYKKFQFLSLPCREEFKDLPA--KDFKASECNKVSSVLLAIRKALEEKV---- 604
                       + LS+   E  +D  A   ++K   C+K+++++ +    LE       
Sbjct: 327 P-----------RRLSI-IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374

Query: 605 -------PES---PSRELCIL-TTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYP 653
                  P S   P+  L ++   + +SD   +   L +  ++ +       +   +S P
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK-----QPKESTISIP 429

Query: 654 SAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKE------FLPY------ 701
           S    L+  + L +  A++ + +  Y  N+      +    P         + +      
Sbjct: 430 SI--YLELKVKLENEYALHRSIVDHY--NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485

Query: 702 -LQELESMPPLLMRYTIDLR----------------------LQRFENALKHIVSMGDSY 738
             + +     + +    D R                      LQ+ +    +I      Y
Sbjct: 486 HPERMTLFRMVFL----DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541

Query: 739 HADCLNLMKKYAQLFPLGLKLITDP 763
               +N +  +  L  +   LI   
Sbjct: 542 ER-LVNAILDF--LPKIEENLICSK 563
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1102
3mkq_A814 Coatomer beta'-subunit; beta-propeller, alpha-sole 99.77
3mkq_A814 Coatomer beta'-subunit; beta-propeller, alpha-sole 99.39
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 98.77
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 98.67
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 98.55
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 98.49
3jrp_A379 Fusion protein of protein transport protein SEC13 98.4
3fm0_A345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 98.35
3mkq_B177 Coatomer subunit alpha; beta-propeller, alpha-sole 98.34
4g56_B357 MGC81050 protein; protein arginine methyltransfera 98.34
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 98.33
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 98.29
2ymu_A577 WD-40 repeat protein; unknown function, two domain 98.28
3fm0_A345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 98.28
1b89_A449 Protein (clathrin heavy chain); triskelion, coated 98.28
3f3f_A351 Nucleoporin SEH1; structural protein, protein comp 98.26
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 98.22
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 98.19
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 98.16
2ynn_A304 Coatomer subunit beta'; protein transport, peptide 98.15
2hes_X330 YDR267CP; beta-propeller, WD40 repeat, biosyntheti 98.14
4h5i_A365 Guanine nucleotide-exchange factor SEC12; copii ve 98.13
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 98.13
2j04_A588 TAU60, YPL007P, hypothetical protein YPL007C; beta 98.12
2vdu_B450 TRNA (guanine-N(7)-)-methyltransferase- associated 98.12
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 98.1
1got_B340 GT-beta; complex (GTP-binding/transducer), G prote 98.06
3ow8_A321 WD repeat-containing protein 61; structural genomi 98.05
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 98.05
4e54_B435 DNA damage-binding protein 2; beta barrel, double 98.04
3jrp_A379 Fusion protein of protein transport protein SEC13 98.04
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 98.03
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 98.03
4g56_B357 MGC81050 protein; protein arginine methyltransfera 98.01
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 98.0
3ow8_A321 WD repeat-containing protein 61; structural genomi 97.99
4h5i_A365 Guanine nucleotide-exchange factor SEC12; copii ve 97.99
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 97.98
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 97.98
2pm7_B297 Protein transport protein SEC13, protein transport 97.97
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 97.97
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 97.96
2pbi_B354 Guanine nucleotide-binding protein subunit beta 5; 97.94
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 97.94
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 97.93
3jro_A753 Fusion protein of protein transport protein SEC13 97.93
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 97.93
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 97.92
2hes_X330 YDR267CP; beta-propeller, WD40 repeat, biosyntheti 97.91
1erj_A393 Transcriptional repressor TUP1; beta-propeller, tr 97.9
2xzm_R343 RACK1; ribosome, translation; 3.93A {Tetrahymena t 97.9
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 97.9
1got_B340 GT-beta; complex (GTP-binding/transducer), G prote 97.9
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 97.89
3bg1_A316 Protein SEC13 homolog; NPC, transport, WD repeat, 97.89
2ymu_A577 WD-40 repeat protein; unknown function, two domain 97.89
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 97.88
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 97.88
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 97.87
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 97.85
2xzm_R343 RACK1; ribosome, translation; 3.93A {Tetrahymena t 97.83
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 97.83
2xyi_A430 Probable histone-binding protein CAF1; transcripti 97.83
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 97.83
3iz6_a380 40S ribosomal protein RACK1 (RACK1); eukaryotic ri 97.82
1pgu_A615 Actin interacting protein 1; WD repeat, seven-blad 97.82
1nr0_A611 Actin interacting protein 1; beta propeller, WD40 97.81
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 97.8
1erj_A393 Transcriptional repressor TUP1; beta-propeller, tr 97.79
2vdu_B450 TRNA (guanine-N(7)-)-methyltransferase- associated 97.79
1vyh_C410 Platelet-activating factor acetylhydrolase IB alph 97.78
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 97.77
3frx_A319 Guanine nucleotide-binding protein subunit beta- l 97.75
2ynn_A304 Coatomer subunit beta'; protein transport, peptide 97.75
2xyi_A430 Probable histone-binding protein CAF1; transcripti 97.74
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 97.71
2pm7_B297 Protein transport protein SEC13, protein transport 97.71
3frx_A319 Guanine nucleotide-binding protein subunit beta- l 97.69
1nr0_A611 Actin interacting protein 1; beta propeller, WD40 97.69
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 97.69
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 97.69
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 97.68
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 97.67
3dw8_B447 Serine/threonine-protein phosphatase 2A 55 kDa RE 97.66
3dw8_B447 Serine/threonine-protein phosphatase 2A 55 kDa RE 97.66
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 97.65
1pgu_A615 Actin interacting protein 1; WD repeat, seven-blad 97.65
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 97.65
3f3f_A351 Nucleoporin SEH1; structural protein, protein comp 97.63
3dm0_A694 Maltose-binding periplasmic protein fused with RAC 97.6
3jro_A753 Fusion protein of protein transport protein SEC13 97.6
2j04_A588 TAU60, YPL007P, hypothetical protein YPL007C; beta 97.6
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 97.54
1vyh_C410 Platelet-activating factor acetylhydrolase IB alph 97.54
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 97.53
4ggc_A318 P55CDC, cell division cycle protein 20 homolog; ce 97.53
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 97.46
3bg1_A316 Protein SEC13 homolog; NPC, transport, WD repeat, 97.46
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 97.46
3dm0_A694 Maltose-binding periplasmic protein fused with RAC 97.44
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 97.44
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 97.4
2oaj_A902 Protein SNI1; WD40 repeat, beta propeller, endocyt 97.38
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 97.38
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 97.36
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 97.34
3gre_A437 Serine/threonine-protein kinase VPS15; seven-blade 97.33
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 97.3
3mkq_B177 Coatomer subunit alpha; beta-propeller, alpha-sole 97.29
2oit_A434 Nucleoporin 214KDA; NH2 terminal domain of NUP214/ 97.29
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 97.28
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 97.28
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 97.28
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 97.27
4gq1_A393 NUP37; propeller, transport protein; 2.40A {Schizo 97.26
2pm7_A399 Protein WEB1, protein transport protein SEC31; bet 97.26
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 97.19
3iz6_a380 40S ribosomal protein RACK1 (RACK1); eukaryotic ri 97.19
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 97.18
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 97.17
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 97.16
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 97.14
4gq1_A393 NUP37; propeller, transport protein; 2.40A {Schizo 97.14
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 97.13
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 97.11
2pbi_B354 Guanine nucleotide-binding protein subunit beta 5; 97.1
3gre_A437 Serine/threonine-protein kinase VPS15; seven-blade 97.06
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 97.06
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 97.05
2j04_B524 YDR362CP, TAU91; beta propeller, type 2 promoters, 97.04
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 97.04
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 97.0
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 96.97
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 96.97
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 96.95
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 96.93
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 96.92
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 96.92
4e54_B435 DNA damage-binding protein 2; beta barrel, double 96.91
1b89_A449 Protein (clathrin heavy chain); triskelion, coated 96.88
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 96.88
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 96.87
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 96.86
3vu4_A355 KMHSV2; beta-propeller fold, protein transport; 2. 96.85
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 96.83
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 96.81
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 96.81
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 96.81
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 96.76
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 96.75
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 96.73
3q15_A378 PSP28, response regulator aspartate phosphatase H; 96.72
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 96.71
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 96.7
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 96.67
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 96.66
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 96.63
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 96.63
3q15_A378 PSP28, response regulator aspartate phosphatase H; 96.6
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 96.6
2pm7_A399 Protein WEB1, protein transport protein SEC31; bet 96.58
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 96.55
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 96.55
4ggc_A318 P55CDC, cell division cycle protein 20 homolog; ce 96.54
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 96.53
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 96.52
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 96.52
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 96.5
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 96.48
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 96.46
2ecf_A741 Dipeptidyl peptidase IV; prolyl oligopeptidase fam 96.46
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 96.45
2j04_B524 YDR362CP, TAU91; beta propeller, type 2 promoters, 96.44
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 96.43
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 96.43
3vu4_A355 KMHSV2; beta-propeller fold, protein transport; 2. 96.42
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 96.38
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 96.36
1pby_B337 Quinohemoprotein amine dehydrogenase 40 kDa subuni 96.34
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 96.27
2oit_A434 Nucleoporin 214KDA; NH2 terminal domain of NUP214/ 96.27
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 96.25
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 96.2
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 96.19
2z3z_A706 Dipeptidyl aminopeptidase IV; peptidase family S9, 96.19
3u3w_A293 Transcriptional activator PLCR protein; ternary co 96.18
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 96.17
2oaj_A902 Protein SNI1; WD40 repeat, beta propeller, endocyt 96.11
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 96.11
4eqf_A365 PEX5-related protein; accessory protein, tetratric 96.05
4eqf_A365 PEX5-related protein; accessory protein, tetratric 96.02
3u4t_A272 TPR repeat-containing protein; structural genomics 96.0
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 95.94
4abn_A474 Tetratricopeptide repeat protein 5; P53 cofactor, 95.9
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 95.88
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 95.84
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 95.73
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 95.7
1xfd_A723 DIP, dipeptidyl aminopeptidase-like protein 6, dip 95.7
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 95.69
2gw1_A514 Mitochondrial precursor proteins import receptor; 95.64
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 95.61
2gw1_A514 Mitochondrial precursor proteins import receptor; 95.58
2ecf_A741 Dipeptidyl peptidase IV; prolyl oligopeptidase fam 95.57
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 95.55
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 95.53
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 95.49
3u4t_A272 TPR repeat-containing protein; structural genomics 95.49
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 95.42
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 95.34
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 95.32
1xfd_A723 DIP, dipeptidyl aminopeptidase-like protein 6, dip 95.3
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 95.28
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 95.26
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 95.26
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 95.19
3mzk_B441 Protein transport protein SEC16; alpha-helical-sta 95.18
2z3z_A706 Dipeptidyl aminopeptidase IV; peptidase family S9, 95.1
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 95.05
1jmx_B349 Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 95.0
1jmx_B349 Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 94.97
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 94.94
2xdw_A710 Prolyl endopeptidase; alpha/beta-hydrolase, amnesi 94.9
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 94.83
1k32_A1045 Tricorn protease; protein degradation, substrate g 94.76
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 94.73
1nir_A543 Nitrite reductase; hemoprotein, denitrification, d 94.51
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 94.48
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 94.39
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 94.32
4gyw_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 94.28
4i17_A228 Hypothetical protein; TPR repeats protein, structu 94.19
4gyw_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 94.18
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 94.15
1jof_A365 Carboxy-CIS,CIS-muconate cyclase; beta-propeller, 94.13
4g26_A501 Pentatricopeptide repeat-containing protein AT2G3 94.03
1pby_B337 Quinohemoprotein amine dehydrogenase 40 kDa subuni 94.01
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 93.98
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 93.95
1z68_A719 Fibroblast activation protein, alpha subunit; sepr 93.91
1k32_A1045 Tricorn protease; protein degradation, substrate g 93.83
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 93.8
1nir_A543 Nitrite reductase; hemoprotein, denitrification, d 93.77
1xip_A388 Nucleoporin NUP159; beta-propeller, transport prot 93.59
3azo_A662 Aminopeptidase; POP family, hydrolase; 2.00A {Stre 93.54
1hz4_A373 MALT regulatory protein; two-helix bundles, helix 93.53
4a5s_A740 Dipeptidyl peptidase 4 soluble form; hydrolase, ty 93.45
4b4t_Q434 26S proteasome regulatory subunit RPN6; hydrolase, 93.06
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 93.0
2bkl_A695 Prolyl endopeptidase; mechanistic study, celiac sp 92.83
4ady_A 963 RPN2, 26S proteasome regulatory subunit RPN2; prot 92.61
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 92.57
4abn_A474 Tetratricopeptide repeat protein 5; P53 cofactor, 92.31
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 92.28
2pzi_A681 Probable serine/threonine-protein kinase PKNG; ATP 92.13
3pe7_A388 Oligogalacturonate lyase; seven-bladed beta-propel 92.1
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 92.1
4g1t_A472 Interferon-induced protein with tetratricopeptide 92.03
1yr2_A741 Prolyl oligopeptidase; prolyl endopeptidase, mecha 92.02
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 91.96
4b4t_Q434 26S proteasome regulatory subunit RPN6; hydrolase, 91.93
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 91.77
1hz4_A373 MALT regulatory protein; two-helix bundles, helix 91.74
3mv2_B310 Coatomer subunit epsilon; vesicular membrane coat 91.73
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 91.71
4a5s_A740 Dipeptidyl peptidase 4 soluble form; hydrolase, ty 91.61
1ouv_A273 Conserved hypothetical secreted protein; TPR repea 91.54
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 91.45
2gop_A347 Trilobed protease; beta propeller, open velcro, hy 91.38
3o4h_A582 Acylamino-acid-releasing enzyme; alpha/beta hydrol 91.34
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 91.34
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 91.23
3dr2_A305 Exported gluconolactonase; gluconolactonase SMP-30 91.23
4i17_A228 Hypothetical protein; TPR repeats protein, structu 91.17
3o4h_A582 Acylamino-acid-releasing enzyme; alpha/beta hydrol 91.08
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 91.08
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 91.03
3qww_A433 SET and MYND domain-containing protein 2; methyltr 91.02
1jof_A365 Carboxy-CIS,CIS-muconate cyclase; beta-propeller, 90.92
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 90.68
3u3w_A293 Transcriptional activator PLCR protein; ternary co 90.47
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 90.46
4f3v_A282 ESX-1 secretion system protein ECCA1; tetratricope 90.44
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 90.39
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 90.38
4g1t_A472 Interferon-induced protein with tetratricopeptide 90.13
1ouv_A273 Conserved hypothetical secreted protein; TPR repea 89.72
2pzi_A681 Probable serine/threonine-protein kinase PKNG; ATP 89.53
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 89.49
2xm6_A490 Protein corresponding to locus C5321 from CFT073 s 89.27
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 88.95
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 88.93
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 88.92
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 88.75
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 88.24
1xip_A388 Nucleoporin NUP159; beta-propeller, transport prot 88.15
3fvz_A329 Peptidyl-glycine alpha-amidating monooxygenase; be 87.88
2qx5_A661 Nucleoporin NIC96; mRNA transport, nuclear pore co 87.81
2dg1_A333 DRP35, lactonase; beta propeller, hydrolase; 1.72A 87.77
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 87.61
3qou_A287 Protein YBBN; thioredoxin-like fold, tetratricopep 87.5
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 87.5
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 87.23
2w18_A356 PALB2, fancn, partner and localizer of BRCA2; fanc 87.22
3mv2_B310 Coatomer subunit epsilon; vesicular membrane coat 87.19
3qou_A287 Protein YBBN; thioredoxin-like fold, tetratricopep 87.12
3q49_B137 STIP1 homology and U box-containing protein 1; E3 87.08
1kt0_A457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 87.02
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 87.0
1p5q_A336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 86.99
2qx5_A661 Nucleoporin NIC96; mRNA transport, nuclear pore co 86.97
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 86.81
3iuj_A693 Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas 86.7
3qww_A433 SET and MYND domain-containing protein 2; methyltr 86.36
2xm6_A490 Protein corresponding to locus C5321 from CFT073 s 86.28
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 86.25
2r5s_A176 Uncharacterized protein VP0806; APC090868.1, vibri 86.13
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 85.99
1z68_A719 Fibroblast activation protein, alpha subunit; sepr 85.82
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 85.81
3pe7_A388 Oligogalacturonate lyase; seven-bladed beta-propel 85.73
2ghs_A326 AGR_C_1268P; regucalcin, structural genomics, join 85.59
3mzk_B441 Protein transport protein SEC16; alpha-helical-sta 85.2
2hr2_A159 Hypothetical protein; alpha-alpha superhelix fold, 85.1
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 84.96
1kt0_A457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 84.95
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 84.51
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 84.38
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 84.1
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 83.44
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 83.29
2xdw_A710 Prolyl endopeptidase; alpha/beta-hydrolase, amnesi 82.84
2ece_A462 462AA long hypothetical selenium-binding protein; 82.7
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 82.59
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 82.58
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 82.42
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 82.23
4f3v_A282 ESX-1 secretion system protein ECCA1; tetratricope 82.11
1p5q_A336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 81.91
3pbp_A452 Nucleoporin NUP82; beta-propeller, mRNA export, mR 81.87
1ihg_A370 Cyclophilin 40; ppiase immunophilin tetratricopept 81.78
2hr2_A159 Hypothetical protein; alpha-alpha superhelix fold, 81.71
1ihg_A370 Cyclophilin 40; ppiase immunophilin tetratricopept 81.54
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 81.42
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 81.3
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 80.84
3c5m_A396 Oligogalacturonate lyase; blade-shaped beta-propel 80.65
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
Probab=99.77  E-value=1e-14  Score=182.01  Aligned_cols=138  Identities=17%  Similarity=0.181  Sum_probs=107.5

Q ss_pred             hhcHHHHHHHHHHcCCCcHHHHHHHHHHHhcchHHHHhccCCcHhHHHHHHHHHHHHhcccChHHHHHHHHHcCCHHHHH
Q 001314          721 LQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAM  800 (1102)
Q Consensus       721 LkryekAl~hl~~~g~~~~deAie~~~~~~~Ly~~AL~L~~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~ekAl  800 (1102)
                      +|.+++|++...   +  .....++.... +.|+.|++++              ..+.+...|+.+|.++.+.|+++.|.
T Consensus       642 ~~~~~~a~~~~~---~--~~~~f~~~l~~-~~~~~A~~~~--------------~~~~~~~~W~~la~~al~~~~~~~A~  701 (814)
T 3mkq_A          642 QEYYEEALNISP---D--QDQKFELALKV-GQLTLARDLL--------------TDESAEMKWRALGDASLQRFNFKLAI  701 (814)
T ss_dssp             TTCHHHHHHHCC---C--HHHHHHHHHHH-TCHHHHHHHH--------------TTCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCChHHheecCC---C--cchheehhhhc-CCHHHHHHHH--------------HhhCcHhHHHHHHHHHHHcCCHHHHH
Confidence            667777775532   1  34445556666 7788888765              33334567888888888899999999


Q ss_pred             HHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhc
Q 001314          801 KAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMH  880 (1102)
Q Consensus       801 ~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ylgD~e~AI~~y~~~~~W~eA~rLa~~h  880 (1102)
                      +||.++++|+.+..+....+ ..    +...++++.....|++..|..+|+. +||+++|+++|++.++|++|+.||.+|
T Consensus       702 ~~y~~~~d~~~l~~l~~~~~-~~----~~~~~~~~~a~~~~~~~~A~~~~~~-~g~~~~a~~~~~~~~~~~~A~~lA~~~  775 (814)
T 3mkq_A          702 EAFTNAHDLESLFLLHSSFN-NK----EGLVTLAKDAETTGKFNLAFNAYWI-AGDIQGAKDLLIKSQRFSEAAFLGSTY  775 (814)
T ss_dssp             HHHHHHTCHHHHHHHHHHTT-CH----HHHHHHHHHHHHTTCHHHHHHHHHH-HTCHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHccChhhhHHHHHHcC-CH----HHHHHHHHHHHHcCchHHHHHHHHH-cCCHHHHHHHHHHcCChHHHHHHHHHh
Confidence            99999999998888876643 22    3456677888889999999999865 999999999999999999999999999


Q ss_pred             CChh
Q 001314          881 RRED  884 (1102)
Q Consensus       881 ~~~d  884 (1102)
                      ...+
T Consensus       776 ~~~~  779 (814)
T 3mkq_A          776 GLGD  779 (814)
T ss_dssp             TCCH
T ss_pred             CCCh
Confidence            8655
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 Back     alignment and structure
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A Back     alignment and structure
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Back     alignment and structure
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Back     alignment and structure
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Back     alignment and structure
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Back     alignment and structure
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Back     alignment and structure
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Back     alignment and structure
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Back     alignment and structure
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Back     alignment and structure
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Back     alignment and structure
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A Back     alignment and structure
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Back     alignment and structure
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>3mzk_B Protein transport protein SEC16; alpha-helical-stack, beta-propeller; 2.69A {Saccharomyces cerevisiae} Back     alignment and structure
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* Back     alignment and structure
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 Back     alignment and structure
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A Back     alignment and structure
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Back     alignment and structure
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* Back     alignment and structure
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* Back     alignment and structure
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Back     alignment and structure
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... Back     alignment and structure
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Back     alignment and structure
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Back     alignment and structure
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Back     alignment and structure
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* Back     alignment and structure
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Back     alignment and structure
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A Back     alignment and structure
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A Back     alignment and structure
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B Back     alignment and structure
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} Back     alignment and structure
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 Back     alignment and structure
>3mzk_B Protein transport protein SEC16; alpha-helical-stack, beta-propeller; 2.69A {Saccharomyces cerevisiae} Back     alignment and structure
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* Back     alignment and structure
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Back     alignment and structure
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1102
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 98.81
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 98.55
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 98.36
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 98.11
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 98.05
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 97.99
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 97.94
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 97.85
d1tbga_340 beta1-subunit of the signal-transducing G protein 97.83
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 97.83
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 97.78
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 97.7
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 97.58
d1tbga_340 beta1-subunit of the signal-transducing G protein 97.49
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 97.22
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 97.21
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 97.1
d1k32a3360 Tricorn protease domain 2 {Archaeon Thermoplasma a 97.1
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 97.04
d1k32a3360 Tricorn protease domain 2 {Archaeon Thermoplasma a 96.94
d1pgua2287 Actin interacting protein 1 {Baker's yeast (Saccha 96.82
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 96.7
d1pgua2287 Actin interacting protein 1 {Baker's yeast (Saccha 96.54
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 96.35
d1sq9a_393 Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac 96.2
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 96.05
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 95.98
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 95.79
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 95.73
d1b89a_336 Clathrin heavy chain proximal leg segment {Cow (Bo 95.7
d1sq9a_393 Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac 95.65
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 95.51
d1qksa2432 C-terminal (heme d1) domain of cytochrome cd1-nitr 95.39
d1b89a_336 Clathrin heavy chain proximal leg segment {Cow (Bo 95.35
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 95.27
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 95.14
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 95.08
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 94.83
d1hz4a_366 Transcription factor MalT domain III {Escherichia 94.63
d2madh_373 Methylamine dehydrogenase, H-chain {Gram negative 94.22
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 94.12
d1hzua2426 C-terminal (heme d1) domain of cytochrome cd1-nitr 94.11
d2hqsa1269 TolB, C-terminal domain {Escherichia coli [TaxId: 93.32
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 93.13
d2madh_373 Methylamine dehydrogenase, H-chain {Gram negative 92.72
d1hz4a_366 Transcription factor MalT domain III {Escherichia 92.71
d1elra_128 Hop {Human (Homo sapiens) [TaxId: 9606]} 92.26
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 92.1
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 91.66
d1qksa2432 C-terminal (heme d1) domain of cytochrome cd1-nitr 91.48
d2hr2a1156 Hypothetical protein CT2138 {Chlorobium tepidum [T 91.37
d2onda1308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 90.61
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 90.25
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 89.69
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 89.68
d2hqsa1269 TolB, C-terminal domain {Escherichia coli [TaxId: 88.94
d2hr2a1156 Hypothetical protein CT2138 {Chlorobium tepidum [T 88.68
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 88.67
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 88.08
d2onda1308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 88.0
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 87.8
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 87.73
d2ff4a2179 Probable regulatory protein EmbR, middle domain {M 87.7
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 86.59
d1dcea1334 Rab geranylgeranyltransferase alpha-subunit, N-ter 86.54
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 85.99
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 85.77
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 84.36
d1ihga1169 Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} 84.12
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 83.41
d1k32a2281 Tricorn protease N-terminal domain {Archaeon Therm 82.67
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 82.48
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 82.34
d2p4oa1302 Hypothetical protein All0351 homologue {Nostoc pun 82.15
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 81.61
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.81  E-value=1.9e-07  Score=103.05  Aligned_cols=212  Identities=14%  Similarity=0.191  Sum_probs=126.6

Q ss_pred             CceeeccCCCeEEEEeeccCCCCCCeEEEEecCCccee-eeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEc
Q 001314            3 AVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERS-SFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF   81 (1102)
Q Consensus         3 ~~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhg-eF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~   81 (1102)
                      .+++|.|+|++||+..      .+..|.+|+-++-+-- ...|.+. ...|..|+|++|+..||..-   ....|.+|+.
T Consensus        11 t~~~~s~dg~~la~~~------~~~~i~iw~~~~~~~~~~~~l~gH-~~~V~~l~fsp~~~~l~s~s---~D~~i~vWd~   80 (371)
T d1k8kc_          11 SCHAWNKDRTQIAICP------NNHEVHIYEKSGNKWVQVHELKEH-NGQVTGVDWAPDSNRIVTCG---TDRNAYVWTL   80 (371)
T ss_dssp             CEEEECTTSSEEEEEC------SSSEEEEEEEETTEEEEEEEEECC-SSCEEEEEEETTTTEEEEEE---TTSCEEEEEE
T ss_pred             EEEEECCCCCEEEEEe------CCCEEEEEECCCCCEEEEEEecCC-CCCEEEEEECCCCCEEEEEE---CCCeEEEEee
Confidence            4789999999999875      3568999997663311 2223332 33699999999999998764   2347999999


Q ss_pred             ccceEEEEEEEEeccC-CC-ceEEecCCCCceEEEEeeCCcEEEEEEEE-----eee--------------ec-CCcEEE
Q 001314           82 SNNHWYLKYEIRYLRR-DG-IRFMWHPTKPLQLICWTLDGQITTYNFIW-----TTA--------------VM-ENSTAL  139 (1102)
Q Consensus        82 ~NYHWYLKqei~~~~~-~~-~~~~W~~e~pl~L~i~t~~g~~~~~~~~w-----~~~--------------~~-d~~~va  139 (1102)
                      .+-.|...+  .+... .. .++.|+|.... |++++.+|.+.++++.-     ...              .+ |...++
T Consensus        81 ~~~~~~~~~--~~~~~~~~v~~i~~~p~~~~-l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~  157 (371)
T d1k8kc_          81 KGRTWKPTL--VILRINRAARCVRWAPNEKK-FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA  157 (371)
T ss_dssp             ETTEEEEEE--ECCCCSSCEEEEEECTTSSE-EEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred             ccccccccc--cccccccccccccccccccc-ceeecccCcceeeeeeccccccccccccccccccccccccccccccee
Confidence            888774433  33322 23 46899997654 88888888887776541     110              11 222222


Q ss_pred             E--EeCCeEEeccCCC-----CCCCCc--------ccccc-cccCCceeEEEEecCCCCceEEEEEeCCceEEEecCCCC
Q 001314          140 V--IDGSKILVTPLSL-----SLMPPP--------MYLFS-LKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPD  203 (1102)
Q Consensus       140 V--IDG~~l~lTp~r~-----a~VPPP--------M~~~~-l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~~  203 (1102)
                      +  -||. +++-.+..     ...++|        -...+ ..-...|.+++|++++  +.++....|+++.+|++....
T Consensus       158 s~s~D~~-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~s~~~d~~i~iwd~~~~~  234 (371)
T d1k8kc_         158 AGSCDFK-CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG--SRVAWVSHDSTVCLADADKKM  234 (371)
T ss_dssp             EEETTSC-EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS--SEEEEEETTTEEEEEEGGGTT
T ss_pred             ccccCcE-EEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccc--ccccccccCCcceEEeeeccc
Confidence            2  2232 22221111     000110        00111 1123458899999865  367777788999999975432


Q ss_pred             ccccccCCceeeeeeccccccCceEEEEEecCceEEEEE
Q 001314          204 MLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVS  242 (1102)
Q Consensus       204 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ll~~~  242 (1102)
                      ....+            ......+..++|..++.+++..
T Consensus       235 ~~~~~------------~~~~~~v~s~~fs~d~~~la~g  261 (371)
T d1k8kc_         235 AVATL------------ASETLPLLAVTFITESSLVAAG  261 (371)
T ss_dssp             EEEEE------------ECSSCCEEEEEEEETTEEEEEE
T ss_pred             ceeee------------ecccccceeeeecCCCCEEEEE
Confidence            21111            1122357788999999888753
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure