Citrus Sinensis ID: 001344

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------

MSEIADPCEEWALKSQTAALVAEIVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSLPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLSSPDFRLHACEFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDISGAILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDTSFMWSLFHTVTFFERALKRSGIRKANLNLQSSSAENSAVMHPMASHLSWMLPPLLKLLRAIHSIWSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQLDTSKEGYGEPNESDIRNWLKGVRDSGYNVLGLSATIGDPFFKSLDSGSVVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHEVAGSDLKVEVMEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFYRVDVLSLKDLDAFASNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKTASPREQKQHMRSLLVLGTGNNLKALAAQKSVNVITNVSTRPRSSDNAPESRTEEGESIGLAAIS

cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccHHHHHccHHHHHHHHcccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccHHHHHHcccccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHccccHHHccccHHHHHHccccHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcHHcHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccccccccccccccccccccccccccc

cccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHcHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHEEHHHHHHHHHHHHHccccccccccccccccHHccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccHEHHcccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHcHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccHHHHHHHHHcHHHHHHHHcccccccccccEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHccccccHHHHHHHHHcHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHcHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHcccccEEEccccccccccccccccccccccccHHHcc

mseiadpceEWALKSQTAALVAEIVRREGINLWQELFPSLvslsskgpIQAELVSMMLRWlpeditvhnedlegDRRRLLLRGLTQSLPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAyaewaplpdlakygiihgcgfllsspdfrlHACEffklvsprkgpadasASEFESAMHDVFQILMKVSGEFlyrsgtsagaidesEFEFAEYICESMVSLGTSNLHCIAREDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTkvahstgdgstvnnadsgsgkvdsrKMRILSFLNDDISGAILDISFQRLVkrekapgtqgplelwsddfegkgdFSQYRSRLLELVKFVasnkplvagvKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVfdgsnqfggansEVQLSLSRIFEGLLRQLLSlkwtepplvVALGHYLDALgpflkyypdaVGGVISKLFELLTslpfvfkdpstnsarHARLQICTSFIRIAktsdksilpHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNnylseplglvrlcsdtSFMWSLFHTVTFFERALKRSGIRKanlnlqsssaensavmhpmashlswmlpPLLKLLRAIHSiwspsisqllPGEIKAAMTMSDAEQfsllgegnpkfsrgavafadgsqldtskegygepnesdIRNWLKgvrdsgynvlglsatigdpffksldSGSVVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHEVAGSDLKVEVMEEKLLRDLTREICSLLSTMAssglnngippieqsghfyrvdvlslkdldafasNSMVGFLLKHKDLALPALQISLEaftwtdgeavTKVSSFCSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMcdrdpaprqvllslpcitpqdLLAFEDALtktaspreqKQHMRSLLVLGTGNNLKALAAQksvnvitnvstrprssdnapesrteegesiglaais

mseiadpceewALKSQTAALVAEIVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSLPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLSSPDFRLHACEFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVahstgdgstvnnadsgsgkvdSRKMRILSflnddisgaILDISFQRLVKREkapgtqgplelwsddfegKGDFSQYRSRLLELVKFVasnkplvagvkvSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIaktsdksilpHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDTSFMWSLFHTVTFFERALKRSGIRKANLNLQSSSAENSAVMHPMASHLSWMLPPLLKLLRAIHSIWSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSqldtskegygepnesDIRNWLKGVRDSGYNVLGLSATIGDPFFKSLDSGSVVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHEVAGSDLKVEVMEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFYRVDVLSLKDLDAFASNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKTASPREQKQHMRSLLVLGTGNNLKALaaqksvnvitnvstrprssdnapesrteegesiglaais

MSEIADPCEEWALKSQTAALVAEIVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHNedlegdrrrlllrglTQslpeilpllyslleRHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLSSPDFRLHACEFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDISGAILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDTSFMWSLFHTVTFFERALKRSGIRKANLNLQSSSAENSAVMHPMASHLSWMlppllkllRAIHSIWSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQLDTSKEGYGEPNESDIRNWLKGVRDSGYNVLGLSATIGDPFFKSLDSGSVVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHEVAGSDLKVEVMEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFYRVDVLSLKDLDAFASNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKTASPREQKQHMRSLLVLGTGNNLKALAAQKSVNVITNVSTRPRSSDNAPESRTEEGESIGLAAIS

*******CEEWALKSQTAALVAEIVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSLPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLSSPDFRLHACEFFKLVS***************AMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLM******************************RILSFLNDDISGAILDISFQRLVKR*******GPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDTSFMWSLFHTVTFFERALKRSGIR*******************MASHLSWMLPPLLKLLRAIHSIWSPSISQLLPGEIKA***********************************************IRNWLKGVRDSGYNVLGLSATIGDPFFKSLDSGSVVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHEVAGSDLKVEVMEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFYRVDVLSLKDLDAFASNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDAL***************LLVLGTGNNLKALAAQKSVNVI******************************

**********WALKSQTAALVAEIVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHNE*********LLRGLTQSLPEILPLLYSLLERHFGAALSEVG********QHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLSSPDFRLHACEFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVN****************LSFLNDDISGAILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSN************LSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPF***********HARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDTSFMWSLFHTVTFFERALK*******************AVMHPMASHLSWMLPPLLKLLRAIHSIWSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKF*RGA*AFAD**************NESDIRNWLKGVRDSGYNVLGLSATIGDPFFKSLDSGSVVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMH**********VMEEKLLRDLTREICSLLSTMA***********************************MVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFE***************MRSLLVLGTG*********************************************

MSEIADPCEEWALKSQTAALVAEIVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSLPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLSSPDFRLHACEFFKLVS************FESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKT********GSTVN*********DSRKMRILSFLNDDISGAILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDTSFMWSLFHTVTFFERALKRSGIRKANLNLQSSSAENSAVMHPMASHLSWMLPPLLKLLRAIHSIWSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQLDTSKEGYGEPNESDIRNWLKGVRDSGYNVLGLSATIGDPFFKSLDSGSVVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHEVAGSDLKVEVMEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFYRVDVLSLKDLDAFASNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTK**********MRSLLVLGTGNNLKALAAQKSVNVITNV***************************

*****DPCEEWALKSQTAALVAEIVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSLPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLSSPDFRLHACEFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDISGAILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDTSFMWSLFHTVTFFERALKRSGIRKANLNLQSSSAENSAVMHPMASHLSWMLPPLLKLLRAIHSIWSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQLDTSKEGYGEPNESDIRNWLKGVRDSGYNVLGLSATIGDPFFKSLDSGSVVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHEVAGSDLKVEVMEEKLLRDLTREICSLLSTMASSG************************LDAFASNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKTASPREQKQHMRSLLVLGTGNNLKALAAQKSVNVITNV***************************

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1096	2.2.26 [Sep-21-2011]
Q0WP44		1202	Protein HASTY 1 OS=Arabid	yes	no	0.983	0.896	0.670	0.0
Q54PQ8		1135	Exportin-5 OS=Dictyosteli	yes	no	0.850	0.821	0.219	1e-41
Q9HAV4		1204	Exportin-5 OS=Homo sapien	yes	no	0.919	0.837	0.207	1e-27
Q924C1		1204	Exportin-5 OS=Mus musculu	yes	no	0.926	0.843	0.210	9e-24
O14116		1234	Uncharacterized protein C	yes	no	0.871	0.773	0.191	0.0002

>sp\|Q0WP44\|HASTY_ARATH Protein HASTY 1 OS=Arabidopsis thaliana GN=HST1 PE=1 SV=1	Back alignment and function desciption

 Score = 1471 bits (3809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 735/1097 (67%), Positives = 885/1097 (80%), Gaps = 19/1097 (1%)

Query: 1    MSEIADPCEEWALKSQTAALVAEIVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRW 60
            MSE+A+  E W LKSQ+AALVAEIVRREG + WQE+F  L SLS++GP+QAELV M LRW
Sbjct: 97   MSEVANASENWPLKSQSAALVAEIVRREGPDRWQEIFTLLTSLSAQGPLQAELVLMTLRW 156

Query: 61   LPEDITVHNEDLEGDRRRLLLRGLTQSLPEILPLLYSLLERHFGAALSEVGRQQLDVAKQ 120
            LPEDIT++N+DLEGDRRRLLLRGLTQSLPEILPLLY+LLERHFGAA+SE G Q  D+AKQ
Sbjct: 157  LPEDITIYNDDLEGDRRRLLLRGLTQSLPEILPLLYNLLERHFGAAMSEAGMQHFDLAKQ 216

Query: 121  HAATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLSSPDFRLHACEFFKLVSPRKGPA 180
            HA  V A LNAI AY EWAP+PDLA+YGI+ GC FLLSS DFRLHACE FKLV  RK P+
Sbjct: 217  HADVVIACLNAIVAYTEWAPVPDLARYGILSGCSFLLSSSDFRLHACEVFKLVCSRKRPS 276

Query: 181  DASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLH 240
            DAS +EF+SA+ ++FQIL   S EFL RS +S+  ID+++++FA  +CESM SLG++NL 
Sbjct: 277  DASTAEFDSAISNLFQILTNASREFLCRSSSSSSVIDDNDYDFAVCMCESMASLGSTNLQ 336

Query: 241  CIAREDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNN 300
             I+ +  ++++YLQQMLG+FQHFK+ LHF++LLFWL+LMRDL+ K K A     G +   
Sbjct: 337  SISSDGGVMAVYLQQMLGFFQHFKLGLHFEALLFWLSLMRDLLPKPKAATYPSGGGSSTG 396

Query: 301  ADSGSGKVDSRKMRILSFLNDDISGAILDISFQRLVKREKAPG----TQGPLELWSDDFE 356
             D  S +VDS K + LS +NDDIS AILD+SFQR++K+EK P     + GPLELWSD+FE
Sbjct: 397  GDDSSSQVDSEKKKTLSLINDDISSAILDVSFQRMLKKEKVPTGIALSLGPLELWSDEFE 456

Query: 357  GKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQS 416
            GKGDF  YRS+LLEL+K  AS+KPL++  K+SERV+ +I  LL S  P Q +AVM+S Q 
Sbjct: 457  GKGDFGPYRSKLLELIKLTASHKPLISSTKISERVITLIKHLLASPAPLQHVAVMDSQQL 516

Query: 417  ALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALG 476
            AL+ +V+ +FDGSN+F G +SEV  +L  IFEGLL+QLLSLKW EP L+    HYLDA+G
Sbjct: 517  ALDCIVATLFDGSNEFAGGSSEVHYALRGIFEGLLQQLLSLKWNEPELMKVHVHYLDAMG 576

Query: 477  PFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILP 536
            PFLKY+PDAVG +I+KLFELLTSLP V KDP+T+++R ARLQICTSFIRIAK ++KS+LP
Sbjct: 577  PFLKYFPDAVGSLINKLFELLTSLPHVVKDPATSTSRAARLQICTSFIRIAKAAEKSVLP 636

Query: 537  HMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQL 596
            HMK IADTM YL +EG LLRGEHN+LGEAFLVMAS+AG QQQQEVLAWLLEPLSQQW+Q 
Sbjct: 637  HMKGIADTMGYLAKEGTLLRGEHNILGEAFLVMASSAGAQQQQEVLAWLLEPLSQQWIQP 696

Query: 597  EWQNNYLSEPLGLVRLCSDTSFMWSLFHTVTFFERALKRSGIRKANLNLQSSSAENSAVM 656
            EWQNNYLS+P+GLVRLCS+TSFMWS++HTVTFFE+ALKRSG RK+NLN  S++   S   
Sbjct: 697  EWQNNYLSDPMGLVRLCSNTSFMWSIYHTVTFFEKALKRSGYRKSNLNTTSATTPAS--- 753

Query: 657  HPMASHLSWMLPPLLKLLRAIHSIWSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFS 716
            HPMA HLSWMLPPLLKLLR +HS+WSPS+ Q LP E++AAMTM+DAE++SLLGE NPK S
Sbjct: 754  HPMAHHLSWMLPPLLKLLRVLHSLWSPSVFQTLPPEMRAAMTMTDAERYSLLGEANPKLS 813

Query: 717  RGAVAFADGSQLDTSKEGYGEPNESDIRNWLKGVRDSGYNVLGLSATIGDPFFKSLDSGS 776
            +G   +ADGS  + +KEG  E +ESDIRNWLKG+RD GYNVLGLS TIG+ FFK LD+  
Sbjct: 814  KGVSVYADGS-FEGTKEGQAEASESDIRNWLKGIRDCGYNVLGLSTTIGETFFKCLDANY 872

Query: 777  VVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSW 836
            V +ALMEN+QSMEFRHIR  +H+ + ++VK CP DMWE WL  LL+PLFIHCQQ LSS+W
Sbjct: 873  VAMALMENLQSMEFRHIRLFIHTFITYIVKSCPADMWESWLGVLLHPLFIHCQQALSSAW 932

Query: 837  SSLMHE-----------VAGSDLKVEVMEEKLLRDLTREICSLLSTMASSGLNNGIPPIE 885
              L+ E            +GSD+K+EVMEEKLLRDLTREI +L STMAS GLN G+P +E
Sbjct: 933  PGLLQEGRAKVPDLFGIQSGSDMKLEVMEEKLLRDLTREIATLFSTMASPGLNTGVPVLE 992

Query: 886  QSGHFYRVDVLSLKDLDAFASNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSF 945
             SGH  RVD+ +L DL AF SNSMVGFLL HK +ALPALQI LE FTWTDGEA TKV  F
Sbjct: 993  HSGHVGRVDMSTLTDLHAFRSNSMVGFLLNHKSVALPALQICLETFTWTDGEATTKVCYF 1052

Query: 946  CSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDP 1005
            C  VVLLA  +NN+ELR+FVSKD+FSA+IRGL +ESNA+ S DLV +CREIFIY+ DRDP
Sbjct: 1053 CGVVVLLAKLTNNVELREFVSKDMFSAVIRGLGMESNAINSPDLVNICREIFIYLSDRDP 1112

Query: 1006 APRQVLLSLPCITPQDLLAFEDALTKTASPREQKQHMRSLLVLGTGNNLKALAAQKSVNV 1065
            APRQVLLSLPC+TP DL AFE+A  KT+SP+EQKQ MRSLL+LGTGNNLKALAAQKS NV
Sbjct: 1113 APRQVLLSLPCLTPNDLHAFEEATAKTSSPKEQKQLMRSLLLLGTGNNLKALAAQKSQNV 1172

Query: 1066 ITNVSTRPRSSDNAPES 1082
            ITNV+ R R   +APE+
Sbjct: 1173 ITNVTARTRLPASAPET 1189

Nucleocytoplasmic transporter involved in the nuclear export of microRNAs (miRNAs). Required for several miRNAs accumulation. Specifically required for miR156 accumulation which targets SPL3, SPL4 and SPL5 transcription factors. Involved in plant development through its role in miRNAs processing. Required for vegetative phase change and vegetative to reproductive phase transition. Functionally dependent on RAN1 binding. Does not seem to be involved in small interfering RNAs (siRNAs) processing.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q54PQ8\|XPO5_DICDI Exportin-5 OS=Dictyostelium discoideum GN=xpo5 PE=3 SV=1	Back alignment and function description

>sp\|Q9HAV4\|XPO5_HUMAN Exportin-5 OS=Homo sapiens GN=XPO5 PE=1 SV=1	Back alignment and function description

>sp\|Q924C1\|XPO5_MOUSE Exportin-5 OS=Mus musculus GN=Xpo5 PE=2 SV=1	Back alignment and function description

>sp\|O14116\|YKX1_SCHPO Uncharacterized protein C328.01c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC328.01c PE=4 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1096
225451181		1206	PREDICTED: protein HASTY 1 [Vitis vinife	0.998	0.907	0.766	0.0
255542432		1430	conserved hypothetical protein [Ricinus	0.966	0.740	0.766	0.0
356504082		1206	PREDICTED: protein HASTY 1-like [Glycine	0.994	0.903	0.718	0.0
356573052		1206	PREDICTED: protein HASTY 1-like [Glycine	0.994	0.903	0.711	0.0
449442883		1185	PREDICTED: protein HASTY 1-like [Cucumis	0.979	0.906	0.689	0.0
307136050		1143	hypothetical protein [Cucumis melo subsp	0.971	0.931	0.674	0.0
297833212		1202	hypothetical protein ARALYDRAFT_477786 [	0.983	0.896	0.672	0.0
357512151		1191	Exportin-5 [Medicago truncatula] gi\|3555	0.984	0.905	0.675	0.0
79393760		1202	protein HASTY [Arabidopsis thaliana] gi\|	0.983	0.896	0.670	0.0
28629393		1202	HASTY [Arabidopsis thaliana]	0.983	0.896	0.669	0.0

>gi\|225451181\|ref\|XP_002272927.1\| PREDICTED: protein HASTY 1 [Vitis vinifera] gi\|298204940\|emb\|CBI34247.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1732 bits (4486), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 852/1111 (76%), Positives = 962/1111 (86%), Gaps = 17/1111 (1%)

Query: 1    MSEIADPCEEWALKSQTAALVAEIVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRW 60
            MSEIA+PCEEWALKSQTAALVAEIVRREG++LWQEL PSLVSLS+ GPIQAELV+MMLRW
Sbjct: 96   MSEIANPCEEWALKSQTAALVAEIVRREGLSLWQELLPSLVSLSNNGPIQAELVAMMLRW 155

Query: 61   LPEDITVHNEDLEGDRRRLLLRGLTQSLPEILPLLYSLLERHFGAALSEVGRQQLDVAKQ 120
            LPEDITVHNEDLEGDRRRLLLRGLTQSL EILP+LY+ LERHFGAAL+EVGRQQLD AKQ
Sbjct: 156  LPEDITVHNEDLEGDRRRLLLRGLTQSLSEILPMLYTFLERHFGAALNEVGRQQLDAAKQ 215

Query: 121  HAATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLSSPDFRLHACEFFKLVSPRKGPA 180
            HAATVTATLNA+NAYAEWAPL DLAKYGIIHGCGFLLSSPDFRLHACEFFKLVS RK P 
Sbjct: 216  HAATVTATLNAVNAYAEWAPLSDLAKYGIIHGCGFLLSSPDFRLHACEFFKLVSSRKRPV 275

Query: 181  DASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLH 240
            D+S+SEF+SAM ++FQILM VS +FLY+S +S   IDESEFEFAEYICESMVSLG+SNL 
Sbjct: 276  DSSSSEFDSAMSNIFQILMNVSRDFLYKSTSSGVVIDESEFEFAEYICESMVSLGSSNLQ 335

Query: 241  CIAREDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTK-VAHSTGDGSTVN 299
            CI  + TILS YLQQMLGYFQH K+ LH+QSL FWLALMRDL+SK K VA + GDGS  N
Sbjct: 336  CITGDSTILSHYLQQMLGYFQHVKLTLHYQSLPFWLALMRDLVSKPKIVAPAAGDGSVDN 395

Query: 300  NADSGSGKVDSRKMRILSFLNDDISGAILDISFQRLVKREKA-PGTQ---GPLELWSDDF 355
            N  SGSG+VD+ K ++ SF+NDDI G +LD+ FQRL+KREK  PGT    GPLELWSDDF
Sbjct: 396  NPGSGSGQVDNEKRKLQSFVNDDICGTMLDVCFQRLLKREKVLPGTSFSLGPLELWSDDF 455

Query: 356  EGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQ 415
            EGKG+FSQYRSRLLEL +FVAS+KPL+A +KVSER+  II SLL+S M AQD+AVMESM 
Sbjct: 456  EGKGEFSQYRSRLLELARFVASDKPLIAAIKVSERIATIIKSLLLSPMSAQDIAVMESMP 515

Query: 416  SALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDAL 475
             ALEN+ S VFDGSN++ G +SE QL+L RIFEGLL+QLLSLKWTEP LV  LGHYLDAL
Sbjct: 516  MALENIASVVFDGSNEYLGGSSETQLALCRIFEGLLQQLLSLKWTEPALVEVLGHYLDAL 575

Query: 476  GPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSIL 535
            G FLKY+P+ VG VI+KLFELLTSLPFV KDP T+SAR+ARLQICTSF+R+AK+++KS+L
Sbjct: 576  GLFLKYFPEGVGSVINKLFELLTSLPFVVKDPKTSSARYARLQICTSFVRLAKSAEKSLL 635

Query: 536  PHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQ 595
            PHMK IADTM YLQREG LLR EHN+LGEAFLVMAS AG+QQQQEVLAWLLEPLS+QW+Q
Sbjct: 636  PHMKGIADTMDYLQREGCLLRAEHNILGEAFLVMASVAGVQQQQEVLAWLLEPLSKQWIQ 695

Query: 596  LEWQNNYLSEPLGLVRLCSDTSFMWSLFHTVTFFERALKRSGIRKANLNLQSSSAENSAV 655
            +EWQ  YLS+P GL+RLCS+TSFMWS+FHTVTFFERALKRSGIRK +LN Q+SS  +   
Sbjct: 696  VEWQQTYLSDPTGLIRLCSETSFMWSIFHTVTFFERALKRSGIRKGSLNSQNSSTASFTP 755

Query: 656  MHPMASHLSWMLPPLLKLLRAIHSIWSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKF 715
            +HPM+SHLSWMLPPLLKLLRAIHS+WSP +SQ LPGEIKAAM MS+ E+ SLLGE NPK 
Sbjct: 756  LHPMSSHLSWMLPPLLKLLRAIHSLWSPPVSQSLPGEIKAAMIMSEVERTSLLGEVNPKL 815

Query: 716  SRGAVAFADGSQLDTSKEGYGEPNESDIRNWLKGVRDSGYNVLGLSATIGDPFFKSLDSG 775
            S+    F DGSQ+DT+KE Y E +E+DIRNWLKG+RDSGYNVLGLS TIGD FFK LD  
Sbjct: 816  SKSVAGFIDGSQIDTNKE-YAESHETDIRNWLKGIRDSGYNVLGLSTTIGDSFFKCLDIS 874

Query: 776  SVVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSS 835
            S+ +ALMENIQSMEFRHIRQL+HSVLI +VKFCP D+WE WLEKLL+PLFIH QQ LS S
Sbjct: 875  SLAIALMENIQSMEFRHIRQLIHSVLIPLVKFCPSDLWEEWLEKLLHPLFIHSQQALSCS 934

Query: 836  WSSLMHE-----------VAGSDLKVEVMEEKLLRDLTREICSLLSTMASSGLNNGIPPI 884
            WS L+ E           +AGSDLKVEVMEEKLLRDLTREIC+LLS +AS GLN G+P +
Sbjct: 935  WSCLLREGRARVPDVHAILAGSDLKVEVMEEKLLRDLTREICALLSVLASPGLNTGLPSL 994

Query: 885  EQSGHFYRVDVLSLKDLDAFASNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSS 944
            EQSGH  R D+ SLKDLDAFAS SMVGFLLKHK LALP  QISLEAFTWTDGEAVTKVSS
Sbjct: 995  EQSGHVSRGDMSSLKDLDAFASTSMVGFLLKHKGLALPLSQISLEAFTWTDGEAVTKVSS 1054

Query: 945  FCSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRD 1004
            FC  VVLLAI S+N+ELR+FV+KDLF AII+GLALESNA +SADLVGLCREIF+Y+ DRD
Sbjct: 1055 FCGVVVLLAISSSNVELREFVAKDLFYAIIQGLALESNAFVSADLVGLCREIFVYLSDRD 1114

Query: 1005 PAPRQVLLSLPCITPQDLLAFEDALTKTASPREQKQHMRSLLVLGTGNNLKALAAQKSVN 1064
            P+PRQVLLSLPCITP DLLAFE+AL KT+SP+EQKQHM+SLL+L TGN LKALAAQKS+N
Sbjct: 1115 PSPRQVLLSLPCITPYDLLAFEEALAKTSSPKEQKQHMKSLLLLATGNKLKALAAQKSMN 1174

Query: 1065 VITNVSTRPRSSDNAPESRTEEGESIGLAAI 1095
            VITNVSTRPRS  NA E R EEG+S+GLAAI
Sbjct: 1175 VITNVSTRPRSMVNASEPRIEEGDSVGLAAI 1205

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255542432\|ref\|XP_002512279.1\| conserved hypothetical protein [Ricinus communis] gi\|223548240\|gb\|EEF49731.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|356504082\|ref\|XP_003520828.1\| PREDICTED: protein HASTY 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|356573052\|ref\|XP_003554679.1\| PREDICTED: protein HASTY 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|449442883\|ref\|XP_004139210.1\| PREDICTED: protein HASTY 1-like [Cucumis sativus] gi\|449482912\|ref\|XP_004156441.1\| PREDICTED: protein HASTY 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|307136050\|gb\|ADN33901.1\| hypothetical protein [Cucumis melo subsp. melo]	Back alignment and taxonomy information

>gi\|297833212\|ref\|XP_002884488.1\| hypothetical protein ARALYDRAFT_477786 [Arabidopsis lyrata subsp. lyrata] gi\|297330328\|gb\|EFH60747.1\| hypothetical protein ARALYDRAFT_477786 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|357512151\|ref\|XP_003626364.1\| Exportin-5 [Medicago truncatula] gi\|355501379\|gb\|AES82582.1\| Exportin-5 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|79393760\|ref\|NP_187155.2\| protein HASTY [Arabidopsis thaliana] gi\|122229983\|sp\|Q0WP44.1\|HASTY_ARATH RecName: Full=Protein HASTY 1; AltName: Full=Protein HASTY gi\|110738356\|dbj\|BAF01105.1\| hypothetical protein [Arabidopsis thaliana] gi\|332640658\|gb\|AEE74179.1\| protein HASTY [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|28629393\|gb\|AAO34666.1\| HASTY [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1096
TAIR\|locus:2114784		1202	HST "AT3G05040" [Arabidopsis t	0.982	0.896	0.641	0.0
DICTYBASE\|DDB_G0284379		1135	xpo5 "exportin 5" [Dictyosteli	0.498	0.481	0.213	5.6e-34
UNIPROTKB\|F1MUF1		1166	XPO5 "Uncharacterized protein"	0.567	0.533	0.206	5.5e-24
UNIPROTKB\|F1NBL6		1253	XPO5 "Uncharacterized protein"	0.562	0.491	0.213	8e-23
RGD\|1311522		1204	Xpo5 "exportin 5" [Rattus norv	0.594	0.541	0.206	1.2e-22
MGI\|MGI:1913789		1204	Xpo5 "exportin 5" [Mus musculu	0.595	0.542	0.208	3.1e-22
UNIPROTKB\|F1PEE4		1205	XPO5 "Uncharacterized protein"	0.565	0.514	0.207	3.9e-22
UNIPROTKB\|J9P8X1		1345	XPO5 "Uncharacterized protein"	0.565	0.460	0.207	8.4e-22
UNIPROTKB\|F1RRK9		1206	LOC100155084 "Uncharacterized	0.365	0.332	0.212	2.3e-21
UNIPROTKB\|Q9HAV4		1204	XPO5 "Exportin-5" [Homo sapien	0.593	0.540	0.216	2.3e-18

TAIR\|locus:2114784 HST "AT3G05040" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3602 (1273.0 bits), Expect = 0., P = 0.
 Identities = 704/1098 (64%), Positives = 854/1098 (77%)

Query:     1 MSEIADPCEEWALKSQTAALVAEIVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRW 60
             MSE+A+  E W LKSQ+AALVAEIVRREG + WQE+F  L SLS++GP+QAELV M LRW
Sbjct:    97 MSEVANASENWPLKSQSAALVAEIVRREGPDRWQEIFTLLTSLSAQGPLQAELVLMTLRW 156

Query:    61 LPEDITVHNXXXXXXXXXXXXXXXTQXXXXXXXXXXXXXXRHFGAALSEVGRQQLDVAKQ 120
             LPEDIT++N               TQ              RHFGAA+SE G Q  D+AKQ
Sbjct:   157 LPEDITIYNDDLEGDRRRLLLRGLTQSLPEILPLLYNLLERHFGAAMSEAGMQHFDLAKQ 216

Query:   121 HAATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLSSPDFRLHACEFFKLVSPRKGPA 180
             HA  V A LNAI AY EWAP+PDLA+YGI+ GC FLLSS DFRLHACE FKLV  RK P+
Sbjct:   217 HADVVIACLNAIVAYTEWAPVPDLARYGILSGCSFLLSSSDFRLHACEVFKLVCSRKRPS 276

Query:   181 DASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLH 240
             DAS +EF+SA+ ++FQIL   S EFL RS +S+  ID+++++FA  +CESM SLG++NL 
Sbjct:   277 DASTAEFDSAISNLFQILTNASREFLCRSSSSSSVIDDNDYDFAVCMCESMASLGSTNLQ 336

Query:   241 CIAREDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVA-HSTGDGSTVN 299
              I+ +  ++++YLQQMLG+FQHFK+ LHF++LLFWL+LMRDL+ K K A + +G GS+  
Sbjct:   337 SISSDGGVMAVYLQQMLGFFQHFKLGLHFEALLFWLSLMRDLLPKPKAATYPSGGGSSTG 396

Query:   300 NADSGSGKVDSRKMRILSFLNDDISGAILDISFQRLVKREKAP-G---TQGPLELWSDDF 355
               DS S +VDS K + LS +NDDIS AILD+SFQR++K+EK P G   + GPLELWSD+F
Sbjct:   397 GDDSSS-QVDSEKKKTLSLINDDISSAILDVSFQRMLKKEKVPTGIALSLGPLELWSDEF 455

Query:   356 EGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQ 415
             EGKGDF  YRS+LLEL+K  AS+KPL++  K+SERV+ +I  LL S  P Q +AVM+S Q
Sbjct:   456 EGKGDFGPYRSKLLELIKLTASHKPLISSTKISERVITLIKHLLASPAPLQHVAVMDSQQ 515

Query:   416 SALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDAL 475
              AL+ +V+ +FDGSN+F G +SEV  +L  IFEGLL+QLLSLKW EP L+    HYLDA+
Sbjct:   516 LALDCIVATLFDGSNEFAGGSSEVHYALRGIFEGLLQQLLSLKWNEPELMKVHVHYLDAM 575

Query:   476 GPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSIL 535
             GPFLKY+PDAVG +I+KLFELLTSLP V KDP+T+++R ARLQICTSFIRIAK ++KS+L
Sbjct:   576 GPFLKYFPDAVGSLINKLFELLTSLPHVVKDPATSTSRAARLQICTSFIRIAKAAEKSVL 635

Query:   536 PHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQ 595
             PHMK IADTM YL +EG LLRGEHN+LGEAFLVMAS+AG QQQQEVLAWLLEPLSQQW+Q
Sbjct:   636 PHMKGIADTMGYLAKEGTLLRGEHNILGEAFLVMASSAGAQQQQEVLAWLLEPLSQQWIQ 695

Query:   596 LEWQNNYLSEPLGLVRLCSDTSFMWSLFHTVTFFERALKRSGIRKANLNLQSSSAENSAV 655
              EWQNNYLS+P+GLVRLCS+TSFMWS++HTVTFFE+ALKRSG RK+NLN  S++   S  
Sbjct:   696 PEWQNNYLSDPMGLVRLCSNTSFMWSIYHTVTFFEKALKRSGYRKSNLNTTSATTPAS-- 753

Query:   656 MHPMASHLSWMXXXXXXXXRAIHSIWSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKF 715
              HPMA HLSWM        R +HS+WSPS+ Q LP E++AAMTM+DAE++SLLGE NPK 
Sbjct:   754 -HPMAHHLSWMLPPLLKLLRVLHSLWSPSVFQTLPPEMRAAMTMTDAERYSLLGEANPKL 812

Query:   716 SRGAVAFADGSQLDTSKEGYGEPNESDIRNWLKGVRDSGYNVLGLSATIGDPFFKSLDSG 775
             S+G   +ADGS  + +KEG  E +ESDIRNWLKG+RD GYNVLGLS TIG+ FFK LD+ 
Sbjct:   813 SKGVSVYADGS-FEGTKEGQAEASESDIRNWLKGIRDCGYNVLGLSTTIGETFFKCLDAN 871

Query:   776 SVVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSS 835
              V +ALMEN+QSMEFRHIR  +H+ + ++VK CP DMWE WL  LL+PLFIHCQQ LSS+
Sbjct:   872 YVAMALMENLQSMEFRHIRLFIHTFITYIVKSCPADMWESWLGVLLHPLFIHCQQALSSA 931

Query:   836 WSSLMHE-----------VAGSDLKVEVMEEKLLRDLTREICSLLSTMASSGLNNGIPPI 884
             W  L+ E            +GSD+K+EVMEEKLLRDLTREI +L STMAS GLN G+P +
Sbjct:   932 WPGLLQEGRAKVPDLFGIQSGSDMKLEVMEEKLLRDLTREIATLFSTMASPGLNTGVPVL 991

Query:   885 EQSGHFYRVDVLSLKDLDAFASNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSS 944
             E SGH  RVD+ +L DL AF SNSMVGFLL HK +ALPALQI LE FTWTDGEA TKV  
Sbjct:   992 EHSGHVGRVDMSTLTDLHAFRSNSMVGFLLNHKSVALPALQICLETFTWTDGEATTKVCY 1051

Query:   945 FCSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRD 1004
             FC  VVLLA  +NN+ELR+FVSKD+FSA+IRGL +ESNA+ S DLV +CREIFIY+ DRD
Sbjct:  1052 FCGVVVLLAKLTNNVELREFVSKDMFSAVIRGLGMESNAINSPDLVNICREIFIYLSDRD 1111

Query:  1005 PAPRQVLLSLPCITPQDLLAFEDALTKTASPREQKQHMRSLLVLGTGNNLKALAAQKSVN 1064
             PAPRQVLLSLPC+TP DL AFE+A  KT+SP+EQKQ MRSLL+LGTGNNLKALAAQKS N
Sbjct:  1112 PAPRQVLLSLPCLTPNDLHAFEEATAKTSSPKEQKQLMRSLLLLGTGNNLKALAAQKSQN 1171

Query:  1065 VITNVSTRPRSSDNAPES 1082
             VITNV+ R R   +APE+
Sbjct:  1172 VITNVTARTRLPASAPET 1189

GO:0005487 "nucleocytoplasmic transporter activity" evidence=NAS

GO:0005635 "nuclear envelope" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0048364 "root development" evidence=IMP

GO:0035281 "pre-miRNA export from nucleus" evidence=IMP;TAS

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

DICTYBASE\|DDB_G0284379 xpo5 "exportin 5" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MUF1 XPO5 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NBL6 XPO5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

RGD\|1311522 Xpo5 "exportin 5" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1913789 Xpo5 "exportin 5" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PEE4 XPO5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P8X1 XPO5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RRK9 LOC100155084 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9HAV4 XPO5 "Exportin-5" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0WP44	HASTY_ARATH	No assigned EC number	0.6700	0.9835	0.8968	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1096
pfam08389		147	pfam08389, Xpo1, Exportin 1-like protein	3e-29

>gnl\|CDD\|219817 pfam08389, Xpo1, Exportin 1-like protein	Back alignment and domain information

 Score =  113 bits (286), Expect = 3e-29
 Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 16/162 (9%)

Query: 10  EWALKSQTAALVAEIVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVH- 68
              ++++ A  +AE+ ++E  + W   FP LVSL S  P   EL+  +L+ LPE+I    
Sbjct: 1   PKFIRNKLALALAELAKQEWPSNWPTFFPDLVSLLSSSPSGCELLLRILKVLPEEIFDFS 60

Query: 69  NEDLEGDRRRLLLRGLTQSLPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTAT 128
              L   RR  L   L   +P+IL LL  +LE                    H+  ++AT
Sbjct: 61  RTPLTQQRRNRLKDLLRSQMPQILELLLQILENSVS---------------AHSELLSAT 105

Query: 129 LNAINAYAEWAPLPDLAKYGIIHGCGFLLSSPDFRLHACEFF 170
           L  + ++  W P+  +    +++    LLS PD R  A E  
Sbjct: 106 LKCLGSWLSWIPIGLILNDPLLNLLFQLLSDPDLREAAVECL 147

The sequences featured in this family are similar to a region close to the N-terminus of yeast exportin 1 (Xpo1, Crm1). This region is found just C-terminal to an importin-beta N-terminal domain (pfam03810) in many members of this family. Exportin 1 is a nuclear export receptor that interacts with leucine-rich nuclear export signal (NES) sequences, and Ran-GTP, and is involved in translocation of proteins out of the nucleus. Length = 147

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1096
COG5101		1053	CRM1 Importin beta-related nuclear transport recep	100.0
KOG2020		1041	consensus Nuclear transport receptor CRM1/MSN5 (im	100.0
KOG2021		980	consensus Nuclear mRNA export factor receptor LOS1	100.0
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	100.0
PF08389		148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	99.85
KOG2022		982	consensus Nuclear transport receptor LGL2 (importi	99.79
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.71
KOG2081		559	consensus Nuclear transport regulator [Intracellul	99.68
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.32
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	98.81
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	98.68
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	98.11
KOG1992		960	consensus Nuclear export receptor CSE1/CAS (import	98.04
KOG1993		978	consensus Nuclear transport receptor KAP120 (impor	98.02
KOG1410		1082	consensus Nuclear transport receptor RanBP16 (impo	97.7
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.06
PF08506		370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	95.56
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	95.16
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	94.34
PTZ00429		746	beta-adaptin; Provisional	93.83
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	92.59
KOG1824		1233	consensus TATA-binding protein-interacting protein	92.34
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	91.11
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	89.59
PF08767		319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	89.08
COG5656		970	SXM1 Importin, protein involved in nuclear import	86.45
PF08767		319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	85.47
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	80.83

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]	Back alignment and domain information

Probab=100.00  E-value=3.8e-57  Score=502.62  Aligned_cols=537  Identities=15%  Similarity=0.188  Sum_probs=425.3

Q ss_pred             hhHHHHHHHHHHHHHHHhhcccchhhHHHHHHHhhcCChhHHHHHHHHHHhhhhhhcccccC-chHHHHHHHHHHHHhhH
Q 001344           10 EWALKSQTAALVAEIVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHNED-LEGDRRRLLLRGLTQSL   88 (1096)
Q Consensus        10 ~~~irnkla~vlveIvkrewp~~Wp~fl~~L~~l~~~~~~~~El~L~iL~~L~EDv~~~~ed-l~~~Rr~~ll~~L~~~~   88 (1096)
                      ..|+.||+..++|+|+|+|||++||+|+|+|++.++.+-..||++|.+|+.|+||||+|.++ ++..|++.++++|+.++
T Consensus       111 qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~~s~~vCeNnmivLklLsEEvFdfSaeqmTq~k~~~LkNqm~~EF  190 (1053)
T COG5101         111 QKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQISMEVCENNMIVLKLLSEEVFDFSAEQMTQVKKRLLKNQMKIEF  190 (1053)
T ss_pred             HHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhccchHHHHhccHHHHHHhHHHHHhccHHHHHHHHHHHHHHHHhhhH
Confidence            67999999999999999999999999999999999999999999999999999999998876 89999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHhccccCCcchhcccCcHHHH-HhhcCChhHhhHHH
Q 001344           89 PEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGC-GFLLSSPDFRLHAC  167 (1096)
Q Consensus        89 p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L-~~ll~~~~~R~~A~  167 (1096)
                      |+||.+|.++||..                 ...+++.|||+++.+|++|||+.+|+++++++++ ..+.+.|++|..++
T Consensus       191 ~qIF~lc~qiLE~~-----------------~~~SLi~ATLesllrfl~wiPl~yIfeTnIieLv~~~f~s~pd~r~~tl  253 (1053)
T COG5101         191 PQIFGLCKQILEYS-----------------RDESLIEATLESLLRFLEWIPLDYIFETNIIELVLEHFNSMPDTRVATL  253 (1053)
T ss_pred             HHHHHHHHHHHHhc-----------------CChHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHhccCCchhHHHH
Confidence            99999999999963                 1245999999999999999999999999999998 58889999999999


Q ss_pred             HHHHHHcCCCCCCCCChH-------HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhhc
Q 001344          168 EFFKLVSPRKGPADASAS-------EFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLH  240 (1096)
Q Consensus       168 ecL~~i~sr~~~~~~~~~-------~f~~~l~~i~~~~~~~~~~~~~~~~~~~~~~dE~~y~f~k~l~e~L~~lg~~~~~  240 (1096)
                      +||++|++.++.|.+...       +|+..+..+-...+-...+++.    .-++.+..+..|+.+++.+++++-..++.
T Consensus       254 ~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e----~Y~~~~~neq~Fvq~LA~fL~s~~~~~~~  329 (1053)
T COG5101         254 SCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYE----VYGGMDKNEQIFVQKLAQFLSSLYEVYIS  329 (1053)
T ss_pred             HHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHH----HHcccChhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998865533311       2222221111000000001110    01345666778999999999999999998


Q ss_pred             ccccccc--cHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhhhcc--ccccCCCCCcccCCCCC---CCCcchhhh
Q 001344          241 CIAREDT--ILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTK--VAHSTGDGSTVNNADSG---SGKVDSRKM  313 (1096)
Q Consensus       241 ~~~~~~~--~l~~~L~~lL~~t~hpsl~vs~~~l~~W~~lL~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~  313 (1096)
                      .+++++.  ++-.-..+++.+.+...-++++.|+++|+.+..+++++.+  ....|++.+....|+..   ..+.+..++
T Consensus       330 lLE~~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s~~istnpn~~~~~p  409 (1053)
T COG5101         330 LLEAREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGSQAISTNPNQDSTKP  409 (1053)
T ss_pred             HhcChhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccchhccCCcchhcccc
Confidence            8876432  4445567888999999999999999999999999877754  23345554433322211   111111222


Q ss_pred             hhhhcchhhhHHHHHHHHHHHhhcccCCC--CCCCCccccccccCChhhHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Q 001344          314 RILSFLNDDISGAILDISFQRLVKREKAP--GTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERV  391 (1096)
Q Consensus       314 ~~~~~~~~~il~~Ll~~~~~rm~~~e~~~--~~~~~~e~~~~Dfd~~~ef~~~Rk~~~~ilr~i~~~~P~~~~~~l~~~l  391 (1096)
                       ...++|.+++++|+-+++++|++||++-  ++++ +|..+ +|-.++|-.+++|.+++++-+++++.-.++..++...+
T Consensus       410 -LrkhiY~~ilsqLrlvlienMvrPEEVliVende-gEivR-efvketDtI~lYksmRevLvyLthL~v~Dte~~mi~Kl  486 (1053)
T COG5101         410 -LRKHIYIGILSQLRLVLIENMVRPEEVLIVENDE-GEIVR-EFVKETDTIELYKSMREVLVYLTHLIVDDTEKYMIGKL  486 (1053)
T ss_pred             -hHHHHHHHHHHHHHHHHHHcCCCcceEEEEECCC-cHHHH-HHhccccHhHHHHHHhhHHHHHhhhhhhhHHHHHHHHH
Confidence             2345678999999999999999999963  2222 45555 67677777899999999999999999999999999999


Q ss_pred             HHHHhhcccCCCChhhHHHHHhHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHhcCCCCc--hHHHHHH
Q 001344          392 MAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEP--PLVVALG  469 (1096)
Q Consensus       392 ~~~l~~~~~~~~~s~~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~~~~~dP--~l~s~~~  469 (1096)
                      ..++++.         .|.|..++++|||+.+  ++|.  + +++.| +++++.++..||.+|....++|+  .+.|.+|
T Consensus       487 arq~dg~---------EWsw~nlNtLcWAIGS--ISGa--m-sE~~E-krF~VnviKdLL~LcemKrgKdnKAVvASnIM  551 (1053)
T COG5101         487 ARQLDGK---------EWSWNNLNTLCWAIGS--ISGA--M-SEVNE-KRFFVNVIKDLLALCEMKRGKDNKAVVASNIM  551 (1053)
T ss_pred             HHHhcCC---------ccchhhHhHHHHHHhc--ccch--h-hhHHH-HHHHHHHHHHHHHHHHHhhcCCcchhheccee
Confidence            9888764         7899999999999954  3322  1 11334 48999999999999998888888  5779999


Q ss_pred             HHHHhhhhhhhcCCCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhcc--------cchhhHHHHH
Q 001344          470 HYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSD--------KSILPHMKDI  541 (1096)
Q Consensus       470 ~~l~~l~~fl~~~~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~~--------~~l~P~l~~i  541 (1096)
                      +++++|+||+++||.|+++|+.|+||+|++..           .-|+.|||++|+||++++|        ..-.||+..|
T Consensus       552 yvvGQYpRFLkahw~FLkTVv~KLFEFMhE~H-----------EGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~I  620 (1053)
T COG5101         552 YVVGQYPRFLKAHWSFLKTVVKKLFEFMHEDH-----------EGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYI  620 (1053)
T ss_pred             eeeccchHHHHHHHHHHHHHHHHHHHHHhhhh-----------hhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHH
Confidence            99999999999999999999999999998422           2467799999999999964        4467998888


Q ss_pred             HHHHHHHHHcccccHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHhHHHHhhhchHhH
Q 001344          542 ADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGI-QQQQEVLAWLLEPLSQQWMQLEW  598 (1096)
Q Consensus       542 ~~~i~~l~~~~~L~~~e~~~L~Eal~~i~~~~~~-~~q~~~l~~ll~P~~~~W~~~~~  598 (1096)
                      +..++..  .|.|.+.++.++|||++.+++..+. ..+..++-.+|+-+++.|..-..
T Consensus       621 irnl~kt--T~dL~pqQ~htfYeAcg~vIse~p~~~~~~rlv~dlm~Lpn~aw~niv~  676 (1053)
T COG5101         621 IRNLPKT--TGDLEPQQKHTFYEACGMVISEVPKTRDYKRLVLDLMDLPNSAWLNIVI  676 (1053)
T ss_pred             HHhhhhh--cccCChHHHhHHHHHHhHHHhccchhhHHHHHHHHHHHhhHHHHHHHHH
Confidence            6666522  2679999999999999999985444 46888999999999999974433

>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)	Back alignment and domain information

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1096
3a6p_A		1204	Crystal Structure Of Exportin-5:rangtp:pre-Mirna Co		3e-22

>pdb|3A6P|A Chain A, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex Length = 1204

Back alignment and structure

Iteration: 1

Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 227/1176 (19%), Positives = 445/1176 (37%), Gaps = 171/1176 (14%) Query: 9 EEWALKSQTAALVAEIVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVH 68 EE +K + +V E+++RE W ++ L +LS +G Q ELV +L L ED+ Sbjct: 108 EENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQGETQTELVMFILLRLAEDVVTF 167 Query: 69 NXXXXXXXXXXXXXXXTQXXXXXXXXXXXXXXRHFGAALSEVGRQQLDVAKQHAATVTAT 128 + Q A+ + A Sbjct: 168 QTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAA 227 Query: 129 LNAINAYAEWAPLPDLAKYGIIHGCGFLLSSPDFRLH------ACEFFKLVSPRKGPADA 182 LN + Y +W + + C L A E + RKG + Sbjct: 228 LNTLAGYIDWVSMSHITA----ENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLED 283 Query: 183 SASEF----ESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSN 238 + AMH + G G + E + F + +C+ + +LG Sbjct: 284 RKPLMVLFGDVAMHYILSAAQTADG----------GGLVEKHYVFLKRLCQVLCALGNQL 333 Query: 239 LHCIAREDTI-----LSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTG 293 + + + YL+ L + H L + + W AL R Sbjct: 334 CALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH------------ 381 Query: 294 DGSTVNNADSGSGKVDSRKMRILSFLNDDISGAILDISFQRLVKREKAPGTQGP-LELWS 352 ++ SR +L+ I L S LVK T P E Sbjct: 382 -------------EILSRDPLLLA-----IIPKYLRASMTNLVKMGFPSKTDSPSCEYSR 423 Query: 353 DDFEGKGDFSQY----RSRLLELVKFVASNKPLVAGVKVSERVMAIINSLL--------- 399 DF+ DF+ + R++ E+++ P + E + +++ L Sbjct: 424 FDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCS 483 Query: 400 --------ISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEG-- 449 + ++ + E+M LE+V++ +F N+ E+ ++ +G Sbjct: 484 AVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNR-----EEIPVN-----DGIE 533 Query: 450 LLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVF----K 505 LL+ +L+ +P ++ + + AL PF+ Y P+ + V SKLF +S+ F K Sbjct: 534 LLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLF---SSVTFETVEESK 590 Query: 506 DPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMA-YLQREGRLLRGEHNLLGE 564 P T + R+ R C+S I++ + + +LP+ + + + L E L + E L E Sbjct: 591 APRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALME 650 Query: 565 AFLVMASAAGIQQQQEV-LAWLLEPLSQQWMQLEWQ--------------------NNYL 603 A +++++ ++Q+V L L+ P++ W+ + + L Sbjct: 651 ALVLISNQFKNYERQKVFLEELMAPVASIWLSQDMHRVLSDVDAFIAYVGTDQKSCDPGL 710 Query: 604 SEPLGLVRLCSDTSFMWSLFHTVTFFERALKRSGIRKANLN---LQSSSAENSAVMHPMA 660 +P GL R + ++ + +R + + +A + +S+ N +P Sbjct: 711 EDPCGLNR----ARMSFCVYSILGVVKRTCWPTDLEEAKAGGFVVGYTSSGNPIFRNPCT 766 Query: 661 SHLSWMXXXXXXXXRAIHSIWSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAV 720 + + R +++++P + + A+ M DAE+ ++LG P + Sbjct: 767 EQILKLLDNLLALIRTHNTLYAPEMLAKMAEPFTKALDMLDAEKSAILGLPQP-----LL 821 Query: 721 AFADGSQLDTSKEGYGEPNESDIRNWLKGVRDSGYNVLGLSA-TIGDPFFKSLD-SGSVV 778 D T E ++ + + ++ +++LG + ++ F+ D + ++ Sbjct: 822 ELNDSPVFKTVLE--------RMQRFFSTLYENCFHILGKAGPSMQQDFYTVEDLATQLL 873 Query: 779 VALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSS 838 + N+ ++ +R ++ + +V FCP + +E + +L PLF + LS W Sbjct: 874 SSAFVNLNNIPDYRLRPMLRVFVKPLVLFCPPEHYEALVSPILGPLFTYLHMRLSQKWQV 933 Query: 839 LMHE--VAGSDLKV-------EVMEEKLLRDLTREICSLLSTMASS---GLNNGIPPIEQ 886 + + G D E++EE+L+R LTRE+ L++ S ++ PP + Sbjct: 934 INQRSLLCGEDEAADENPESQEMLEEQLVRMLTREVMDLITVCCVSKKGADHSSAPPADG 993 Query: 887 SGHFYRVDVLSLKDLDAFASNSMVG-FLLKHKDLALPALQISLEAFTWTDGEAVTKVSSF 945 ++ A A + +G L+KH+D+ L + + W D + + +S Sbjct: 994 DDEEMMATEVT---PSAMAELTDLGKCLMKHEDVCTALLITAFNSLAWKDTLSCQRTTSQ 1050 Query: 946 CSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALE-SNAVISADLVGLCREIFIYMCDRD 1004 +L + S + L V+ LF+++++GL + + A LV L +I+ + R Sbjct: 1051 LCWPLLKQVLSGTL-LADAVTW-LFTSVLKGLQMHGQHDGCMASLVHLAFQIYEALRPRY 1108 Query: 1005 PAPRQVLLSLPCITPQDLLAFE-----DALTKTASPREQKQHMRSLLVLGTGNNLKALAA 1059 R V+ +P I L F+ +L K A R + Q R L+ G Sbjct: 1109 LEIRAVMEQIPEIQKDSLDQFDCKLLNPSLQKVADKRRKDQFKR--LIAGCIGKPLGEQF 1166 Query: 1060 QKSVNVITNVSTRPRSSDNAPESRTEEGESIGLAAI 1095 +K V+ I N+ + + + E+ + + GLA I Sbjct: 1167 RKEVH-IKNLPSLFKKTKPMLETEVLDNDGGGLATI 1201

PyMOL of 3a6p

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1096
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	1e-152
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	6e-29
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	1e-27
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	3e-24
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204	Back alignment and structure

 Score =  484 bits (1245), Expect = e-152
 Identities = 220/1159 (18%), Positives = 446/1159 (38%), Gaps = 133/1159 (11%)

Query: 7    PCEEWALKSQTAALVAEIVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDIT 66
              EE  +K   + +V E+++RE    W ++   L +LS +G  Q ELV  +L  L ED+ 
Sbjct: 106  LEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQGETQTELVMFILLRLAEDVV 165

Query: 67   VHNEDLEGDRRRLLLRGLTQSLPEILPLLYSLLERHFGAALS-EVGRQQLDVAKQHAATV 125
               + L   RRR + + LTQ++  I   L + L+ +       +    Q   A+ +    
Sbjct: 166  -TFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVG 224

Query: 126  TATLNAINAYAEWAPLPDLAKYGI--IHGCGFLLSSPDFRLHACEFFKLVSPRKGPADAS 183
             A LN +  Y +W  +  +       +     LL+  + +L A E   +   RKG  +  
Sbjct: 225  VAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDR 284

Query: 184  ASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIA 243
                          ++              G + E  + F + +C+ + +LG      + 
Sbjct: 285  KPLMVLFGDVAMHYILS------AAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLG 338

Query: 244  REDTI-----LSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTV 298
             +  +        YL+  L +  H    L   + + W AL R                  
Sbjct: 339  ADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH----------------- 381

Query: 299  NNADSGSGKVDSRKMRILSFLNDDISGAILDISFQRLVKREKAPGTQGP-LELWSDDFEG 357
                    ++ SR   +L+ +        L  S   LVK      T  P  E    DF+ 
Sbjct: 382  --------EILSRDPLLLAIIPK-----YLRASMTNLVKMGFPSKTDSPSCEYSRFDFDS 428

Query: 358  KGD----FSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAV--- 410
              D    F+  R++  E+++      P  +     E +   +++ L +       AV   
Sbjct: 429  DEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTG 488

Query: 411  --------------MESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLS 456
                           E+M   LE+V++ +F   N+        ++ ++   E LL+ +L+
Sbjct: 489  EGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNRE-------EIPVNDGIE-LLQMVLN 540

Query: 457  LKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLT-SLPFVFKDPSTNSARHA 515
                +P ++  +   + AL PF+ Y P+ +  V SKLF  +T       K P T + R+ 
Sbjct: 541  FDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNV 600

Query: 516  RLQICTSFIRIAKTSDKSILPHMKDIADTMA-YLQREGRLLRGEHNLLGEAFLVMASAAG 574
            R   C+S I++ +   + +LP+   + + +   L  E  L + E   L EA +++++   
Sbjct: 601  RRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFK 660

Query: 575  -IQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLC-----------------SDT 616
              ++Q+  L  L+ P++  W+  +     LS+    +                    +  
Sbjct: 661  NYERQKVFLEELMAPVASIWLSQDMH-RVLSDVDAFIAYVGTDQKSCDPGLEDPCGLNRA 719

Query: 617  SFMWSLFHTVTFFERALKRSGIRKANLN---LQSSSAENSAVMHPMASHLSWMLPPLLKL 673
               + ++  +   +R    + + +A      +  +S+ N    +P    +  +L  LL L
Sbjct: 720  RMSFCVYSILGVVKRTCWPTDLEEAKAGGFVVGYTSSGNPIFRNPCTEQILKLLDNLLAL 779

Query: 674  LRAIHSIWSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQLDTSKE 733
            +R  +++++P +   +      A+ M DAE+ ++LG   P              L+ +  
Sbjct: 780  IRTHNTLYAPEMLAKMAEPFTKALDMLDAEKSAILGLPQPL-------------LELNDS 826

Query: 734  GYGEPNESDIRNWLKGVRDSGYNVLGLSAT-IGDPFFKSLD-SGSVVVALMENIQSMEFR 791
               +     ++ +   + ++ +++LG +   +   F+   D +  ++ +   N+ ++   
Sbjct: 827  PVFKTVLERMQRFFSTLYENCFHILGKAGPSMQQDFYTVEDLATQLLSSAFVNLNNIPDY 886

Query: 792  HIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHE--------- 842
             +R ++   +  +V FCP + +E  +  +L PLF +    LS  W  +            
Sbjct: 887  RLRPMLRVFVKPLVLFCPPEHYEALVSPILGPLFTYLHMRLSQKWQVINQRSLLCGEDEA 946

Query: 843  VAGSDLKVEVMEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFYRVDVLSLKDLD 902
               +    E++EE+L+R LTRE+  L++    S           +       + +     
Sbjct: 947  ADENPESQEMLEEQLVRMLTREVMDLITVCCVSKKGADHSSAPPADGDDEEMMATEVTPS 1006

Query: 903  AFASNS-MVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIEL 961
            A A  + +   L+KH+D+    L  +  +  W D  +  + +S     +L  + S    L
Sbjct: 1007 AMAELTDLGKCLMKHEDVCTALLITAFNSLAWKDTLSCQRTTSQLCWPLLKQVLSG--TL 1064

Query: 962  RQFVSKDLFSAIIRGLALE-SNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQ 1020
                   LF+++++GL +   +    A LV L  +I+  +  R    R V+  +P I   
Sbjct: 1065 LADAVTWLFTSVLKGLQMHGQHDGCMASLVHLAFQIYEALRPRYLEIRAVMEQIPEIQKD 1124

Query: 1021 DLLAFEDALTKT----ASPREQKQHMRSLLVLGTGNNLKALAAQKSVNVITNVSTRPRSS 1076
             L  F+  L        + + +K   + L+    G  L      +    I N+ +  + +
Sbjct: 1125 SLDQFDCKLLNPSLQKVADKRRKDQFKRLIAGCIGKPLGEQF--RKEVHIKNLPSLFKKT 1182

Query: 1077 DNAPESRTEEGESIGLAAI 1095
                E+   + +  GLA I
Sbjct: 1183 KPMLETEVLDNDGGGLATI 1201

PyMOL of 3a6p

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1096
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	100.0
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	100.0
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	100.0
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	100.0
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	100.0
2x19_B		963	Importin-13; nuclear transport, protein transport;	100.0
2x1g_F		971	Cadmus; transport protein, developmental protein,	100.0
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	99.84
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	99.76
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	99.73
1qgr_A		876	Protein (importin beta subunit); transport recepto	99.62
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	99.18
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	98.46
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.44
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	98.0
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	97.72
1qgr_A		876	Protein (importin beta subunit); transport recepto	97.69
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.66
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	97.53
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	97.28
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	96.84
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	95.12
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	95.12
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	94.71
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	94.36
2x19_B		963	Importin-13; nuclear transport, protein transport;	94.16
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	92.92
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	92.24
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	89.37
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	87.87
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	86.39
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	83.53
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	83.53
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	82.95
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	82.79
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	82.52
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	82.34

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}	Back alignment and structure

Probab=100.00  E-value=1.2e-126  Score=1256.92  Aligned_cols=1010  Identities=21%  Similarity=0.325  Sum_probs=785.4

Q ss_pred             hhhHHHHHHHHHHHHHHHhhcccchhhHHHHHHHhhcCChhHHHHHHHHHHhhhhhhcccccCchHHHHHHHHHHHHhhH
Q 001344            9 EEWALKSQTAALVAEIVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSL   88 (1096)
Q Consensus         9 e~~~irnkla~vlveIvkrewp~~Wp~fl~~L~~l~~~~~~~~El~L~iL~~L~EDv~~~~edl~~~Rr~~ll~~L~~~~   88 (1096)
                      ++.+||||+++++++|+|++||+.||+|+++|+++++.++.++|++|.+|+.|+||++.+ +++...|++++++.++..+
T Consensus       108 ~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~~~~~~e~~L~iL~~L~Eev~~~-~~~~~~r~~~l~~~l~~~~  186 (1204)
T 3a6p_A          108 EENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQGETQTELVMFILLRLAEDVVTF-QTLPPQRRRDIQQTLTQNM  186 (1204)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTS-CCSCHHHHHHHHHHHHHTH
T ss_pred             ccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHccc-cchHHHHHHHHHHHHHHHH
Confidence            579999999999999999999999999999999999888999999999999999999984 6676789999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhh-hhhhHHHhhHHHHHHHHHHHHHhccccCCcchhcccC--cHHHHHhhcCChhHhhH
Q 001344           89 PEILPLLYSLLERHFGAALSEVG-RQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYG--IIHGCGFLLSSPDFRLH  165 (1096)
Q Consensus        89 p~I~~~~~~~Le~~~~~~~~~~~-~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~--ll~~L~~ll~~~~~R~~  165 (1096)
                      |+||.++++++++++..+..++. .++.+.+..+..++.++|+|++.|++|+|++.+++.+  +++.++.+++++++|..
T Consensus       187 ~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~~~lr~~  266 (1204)
T 3a6p_A          187 ERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNEQELQLG  266 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGCTTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCCHHHHHH
Confidence            99999999999886554433211 2233334456779999999999999999999998764  99998888889999999


Q ss_pred             HHHHHHHHcCCCCCCCCChHHHH----HHHHHHHHHHHHHHHHHhhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhhcc
Q 001344          166 ACEFFKLVSPRKGPADASASEFE----SAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHC  241 (1096)
Q Consensus       166 A~ecL~~i~sr~~~~~~~~~~f~----~~l~~i~~~~~~~~~~~~~~~~~~~~~~dE~~y~f~k~l~e~L~~lg~~~~~~  241 (1096)
                      |++||++|++|+++++++.+++.    ..+..++..    +.      ..++.+++|++++|.|++|++++++|..+..+
T Consensus       267 A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~----~~------~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l  336 (1204)
T 3a6p_A          267 AAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSA----AQ------TADGGGLVEKHYVFLKRLCQVLCALGNQLCAL  336 (1204)
T ss_dssp             HHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHH----HH------TCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHH----hh------cCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999865332222221    122233322    11      23455678999999999999999999887765


Q ss_pred             ccc-----ccccHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhh-hhccccccCCCCCcccCCCCCCCCcchhhhhh
Q 001344          242 IAR-----EDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLM-SKTKVAHSTGDGSTVNNADSGSGKVDSRKMRI  315 (1096)
Q Consensus       242 ~~~-----~~~~l~~~L~~lL~~t~hpsl~vs~~~l~~W~~lL~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (1096)
                      +.+     ....+..|+++|+.+|+||+.+++..+++||..++++.. +..                          +  
T Consensus       337 ~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~--------------------------~--  388 (1204)
T 3a6p_A          337 LGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRD--------------------------P--  388 (1204)
T ss_dssp             HHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTC--------------------------H--
T ss_pred             HhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhccccccc--------------------------H--
Confidence            542     345789999999999999999999999999999998721 110                          0  


Q ss_pred             hhcchhhhHHHHHHHH---HHHhhcccCCCCCCCCccccccccCChh----hHHHHHHHHHHHHHHHHccCchHHHHHHH
Q 001344          316 LSFLNDDISGAILDIS---FQRLVKREKAPGTQGPLELWSDDFEGKG----DFSQYRSRLLELVKFVASNKPLVAGVKVS  388 (1096)
Q Consensus       316 ~~~~~~~il~~Ll~~~---~~rm~~~e~~~~~~~~~e~~~~Dfd~~~----ef~~~Rk~~~~ilr~i~~~~P~~~~~~l~  388 (1096)
                         ...++++.|++++   ..||.+|++..  .++.++..+|||+++    +|++|||++.++++.++++.|..+++++.
T Consensus       389 ---~~~~~l~~Ll~vl~~~l~k~~yp~~~~--~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~  463 (1204)
T 3a6p_A          389 ---LLLAIIPKYLRASMTNLVKMGFPSKTD--SPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAG  463 (1204)
T ss_dssp             ---HHHHHHHHHHHHHHHHHSCCCCSSCCS--STHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHHHhcCccccC--CcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence               0137899999999   55666655321  111234446777664    36999999999999999999999999999


Q ss_pred             HHHHHHHhhcc-----------------cCCCChhhHHHHHhHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHHH
Q 001344          389 ERVMAIINSLL-----------------ISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLL  451 (1096)
Q Consensus       389 ~~l~~~l~~~~-----------------~~~~~s~~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~~~~~l~~~l~~Ll  451 (1096)
                      +++...+.+..                 .++..++.|..||++.+++||+++|++++...   ++.+.     ..+.+++
T Consensus       464 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~---~~l~~-----~~~~~Ll  535 (1204)
T 3a6p_A          464 EWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNR---EEIPV-----NDGIELL  535 (1204)
T ss_dssp             HHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCT---TCCCH-----HHHHHHH
T ss_pred             HHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhccccc---ccccH-----HHHHHHH
Confidence            99977765421                 12344678999999999999999999886531   11111     2477888


Q ss_pred             HHHHhcCCCCchHHHHHHHHHHhhhhhhhcCCCchhHHHHHHHHhhccC-CCccCCCCchHHHHHHHHHHHHHHHHHHhc
Q 001344          452 RQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSL-PFVFKDPSTNSARHARLQICTSFIRIAKTS  530 (1096)
Q Consensus       452 ~~ll~~~~~dP~l~s~~~~~l~~l~~fl~~~~~~l~~VL~klf~~l~~~-p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~  530 (1096)
                      +.|+++++++|.++...+.++++|++|+.++|+++++||++||..+... |+..++++++++|++|++||++|.+||+.+
T Consensus       536 ~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~  615 (1204)
T 3a6p_A          536 QMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDY  615 (1204)
T ss_dssp             HHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHh
Confidence            8899889999999999999999999999999999999999999988753 444566778899999999999999999999


Q ss_pred             ccchhhHHHHHHHHHHHHHHccc-ccHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHhHHHHhhhchHhHhhhhcCChHH
Q 001344          531 DKSILPHMKDIADTMAYLQREGR-LLRGEHNLLGEAFLVMAS-AAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLG  608 (1096)
Q Consensus       531 ~~~l~P~l~~i~~~i~~l~~~~~-L~~~e~~~L~Eal~~i~~-~~~~~~q~~~l~~ll~P~~~~W~~~~~~~~~l~~~~~  608 (1096)
                      ++.+.||+++|.+.+.+++.+++ ++.+|++.||||++++++ ..+.++|.++++.+++|+.++|.+++|++ ++++|.+
T Consensus       616 ~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~~~~~~-~~s~~~~  694 (1204)
T 3a6p_A          616 PQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLSQDMHR-VLSDVDA  694 (1204)
T ss_dssp             HHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSCHHHHH-HHHCHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHccHHHHH-hhcCHHH
Confidence            99999999999999999999888 999999999999999986 46778899999999999999999999997 9999999


Q ss_pred             HHHhccCC-------------ccchhhHhHHHHHHHHHhhhcccccc---------ccccCCCCCCcccccchhhhhhhh
Q 001344          609 LVRLCSDT-------------SFMWSLFHTVTFFERALKRSGIRKAN---------LNLQSSSAENSAVMHPMASHLSWM  666 (1096)
Q Consensus       609 f~~~~~~~-------------~~~~~~~~~~~~~~~~lkr~~~~~~~---------~~s~~~~~~~~~~~~p~~~~~~~i  666 (1096)
                      |++++|..             ..|+.++++++.+++++||++++..+         +++  .++++|.++||+++++++|
T Consensus       695 f~~~~G~~~~~~~~~~~d~~~~~r~~l~~~~~~l~~~l~r~~~~~~~~~~~~~gf~~~~--~~~~~p~~~~p~~~~i~~i  772 (1204)
T 3a6p_A          695 FIAYVGTDQKSCDPGLEDPCGLNRARMSFCVYSILGVVKRTCWPTDLEEAKAGGFVVGY--TSSGNPIFRNPCTEQILKL  772 (1204)
T ss_dssp             HHHHHTSSCC--CTTCCTHHHHHHHHHHHHHHHHHHHHHHCCCCSSHHHHHHTTCEEEE--CSSCCEEECCTTHHHHHHH
T ss_pred             HHHHhCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHhcCCCChhhhhcCCceecc--CCCCCccccCchHHHHHHH
Confidence            99999921             13799999999999999998654321         221  2367789999999999999


Q ss_pred             hhhHHHHHHHHHhccCccccccCchHHHHHcccCHHHHhhhcCCCCCCCccccccccCCCCCCCCcCCCCCCchHHHHHH
Q 001344          667 LPPLLKLLRAIHSIWSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQLDTSKEGYGEPNESDIRNW  746 (1096)
Q Consensus       667 Lp~ll~Llr~~h~l~~P~~~~~l~~~~~~~~~~~~~Er~~~lg~~~~~~sk~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  746 (1096)
                      ||+|++|+|++|++|+|++|+++|++|+++++|+++||+|++|.+.  .++   +|++.+        +.....+++|+|
T Consensus       773 lP~ll~Ll~~~~~l~~p~~~~~l~~~~~~~~~~~~~er~~~~g~~~--~~~---~~~~~~--------~~~~~~~~l~~~  839 (1204)
T 3a6p_A          773 LDNLLALIRTHNTLYAPEMLAKMAEPFTKALDMLDAEKSAILGLPQ--PLL---ELNDSP--------VFKTVLERMQRF  839 (1204)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHTTSCGGGTTTTSCCHHHHHHHTCCCC--CCC---CTTCCC--------SCCCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCcHhhhhcCHHHHHHHhccHHHHHHhcCCCc--ccc---cccccC--------CCcCcHHHHHHH
Confidence            9999999999999999999999999999999999999999999876  233   244432        124678999999


Q ss_pred             HHHHHHHHHHHHHhhh-cCCcccccCCCchH-HHHHHhcCCCCCccccHHHHHHHHHHHhhccCChhhHHHHHHHhhHHH
Q 001344          747 LKGVRDSGYNVLGLSA-TIGDPFFKSLDSGS-VVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPL  824 (1096)
Q Consensus       747 l~~~re~~y~ilg~~~-~l~~~Fy~~~~l~~-l~~al~~~~~~l~~~~lr~ll~~~~~plv~~CP~~~~~~~l~plL~~l  824 (1096)
                      ++.+||+||++||+++ ++|++||++++++. +.+|+|+++++||+||||.+||+|++|+|++||+++|++|++|+|+|+
T Consensus       840 ~~~~re~~y~~lg~~~~~l~~~fy~~~~l~~~l~~~~f~~l~~~~~~~l~~li~~~~~p~i~~CP~~~~~~~l~plL~~l  919 (1204)
T 3a6p_A          840 FSTLYENCFHILGKAGPSMQQDFYTVEDLATQLLSSAFVNLNNIPDYRLRPMLRVFVKPLVLFCPPEHYEALVSPILGPL  919 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTTTTSTTHHHHHHHHTTSSTTTSCHHHHHHHHHHTHHHHHHTCCGGGTTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcccccccCCcchHHHHHHHHHhcchhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            9999999999999995 99999999999977 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhHHhhhhc---------cCCchhHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCCCCCCCCCCCccccc-
Q 001344          825 FIHCQQVLSSSWSSLMHEV---------AGSDLKVEVMEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFYRVD-  894 (1096)
Q Consensus       825 f~~~~~rL~~~W~~i~~~~---------~~~~~~~E~~ee~llr~LTr~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~-  894 (1096)
                      |++|++||+++|+.+.+++         +++++++||+||++||+|||++++++.+++.++.+ +.  ...+|+.+.+| 
T Consensus       920 f~~~~~~L~~~W~~i~~~~~~~~~~~~~~~~~~~~E~~~e~llr~lTr~~~~ll~~~~~~~~~-~~--~~~~~~~~~~~~  996 (1204)
T 3a6p_A          920 FTYLHMRLSQKWQVINQRSLLCGEDEAADENPESQEMLEEQLVRMLTREVMDLITVCCVSKKG-AD--HSSAPPADGDDE  996 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHTC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHBC--------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CC--cccccccccccc
Confidence            9999999999999999851         24679999999999999999999999999887632 21  12234443332 


Q ss_pred             -ccccc--cchhhhhhhhHHHHhcCcCchhHHHHHHHhhhcccchh-hhHHHHHhHHHHHHHhhcccchhhhHHHHHHHH
Q 001344          895 -VLSLK--DLDAFASNSMVGFLLKHKDLALPALQISLEAFTWTDGE-AVTKVSSFCSAVVLLAIQSNNIELRQFVSKDLF  970 (1096)
Q Consensus       895 -~~~~~--~~~~~~~~~l~~~~l~~~~i~~~~l~~~~~~l~w~Dt~-~~~ka~~~~~~l~~~~~~~~~~~l~~~~~~~~~  970 (1096)
                       +.++.  +......++|++|++.|+++++|+|.+|+++|+|+||+ |+.+|+.||+++++..+.  +..+.++ +.++|
T Consensus       997 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~~~~~l~~~D~~~~~~~~~~~~~~~v~~~~~--~~~~~~~-~~~l~ 1073 (1204)
T 3a6p_A          997 EMMATEVTPSAMAELTDLGKCLMKHEDVCTALLITAFNSLAWKDTLSCQRTTSQLCWPLLKQVLS--GTLLADA-VTWLF 1073 (1204)
T ss_dssp             -------------CBCHHHHHHHSSHHHHHHHHHHHHHHTTSSCHHHHHHHHHHTHHHHHTTSCS--SCCCHHH-HHHHH
T ss_pred             ccccccccccchhhcchHHHHHhcCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHhc--ccCchHH-HHHHH
Confidence             22221  22244558999999999999999999999999999999 999999999999987753  3345565 99999


Q ss_pred             HHHHHHhccCch-HhhHHHHHHHHHHHHHhcCCCCchHHHHHHhCCCCCHHHHHHHHHHHhcCC----ChHHHHHHHHHH
Q 001344          971 SAIIRGLALESN-AVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKTA----SPREQKQHMRSL 1045 (1096)
Q Consensus       971 ~a~l~~L~~~~~-~~~~~~l~~L~~~iy~~l~~~~~~~~~vL~~lP~i~~~~l~~f~~~l~~~~----s~k~qr~~~k~l 1045 (1096)
                      +++|+||+.+++ +++++|+++|++.||+.|++++++||+||++||||+++++++|++++.++.    ++|+||++||||
T Consensus      1074 ~~vl~~l~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~~vl~~lP~i~~~~~~~f~~~l~~~~~~~~~~k~qr~~~~~l 1153 (1204)
T 3a6p_A         1074 TSVLKGLQMHGQHDGCMASLVHLAFQIYEALRPRYLEIRAVMEQIPEIQKDSLDQFDCKLLNPSLQKVADKRRKDQFKRL 1153 (1204)
T ss_dssp             HHHHHHHHHSCSCHHHHHHHHHHHHHHHHHSTTTCSTHHHHHTTSSSCCHHHHHHHHHHSSCC-----------------
T ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHHHHHhCCCCccHHHHHHhCCCCCHHHHHHHHHHHhcccccccchHHHHHHHHHH
Confidence            999999998885 899999999999999999999999999999999999999999999997644    599999999999


Q ss_pred             HHhhcCCchhhhhhhhcccc-ccccCCCCCCCCCCCCCCcccCCccccccC
Q 001344         1046 LVLGTGNNLKALAAQKSVNV-ITNVSTRPRSSDNAPESRTEEGESIGLAAI 1095 (1096)
Q Consensus      1046 l~~~~g~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1095 (1096)
                      |++++|+++++   |++..| |.|+|+.++.++++.+...-|.+..||+.|
T Consensus      1154 l~~~~g~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 1201 (1204)
T 3a6p_A         1154 IAGCIGKPLGE---QFRKEVHIKNLPSLFKKTKPMLETEVLDNDGGGLATI 1201 (1204)
T ss_dssp             ---------------------------------------------------
T ss_pred             HHHhcCCcHHH---hhcccccccCCCCCCCCCCCCCcCCCCCCccccHHHh
Confidence            99999999875   888887 999999977666665555445555599876

PyMOL of 3a6p

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A	Back alignment and structure

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1096
d1wa5c_		959	a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc	2e-04

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.4 bits (101), Expect = 2e-04
 Identities = 56/552 (10%), Positives = 157/552 (28%), Gaps = 43/552 (7%)

Query: 13  LKSQTAALVAEIVRREGINLWQELFPSLVS-LSSKGPIQAELVSMMLRWLPEDITVHNED 71
           L+ Q    ++ I   +  + W  L   L S LS+   +  + V  +   + +        
Sbjct: 101 LQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRW--RPLF 158

Query: 72  LEGDRRRLLLRGLTQSLPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNA 131
              +    +   L       L LL ++ E+      +E  +  L++       +      
Sbjct: 159 RSDELFLEIKLVLDVFTAPFLNLLKTVDEQ---ITANENNKASLNILFDVLLVLIKLYYD 215

Query: 132 INAYAEWAPLPDLAKYG------IIHGCGFLLSSPDFRLHACEFFKLVSPRKGPADASAS 185
            N         D  + G       +     LL  PD   HA    K+ S  +       +
Sbjct: 216 FNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTT 275

Query: 186 EFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIARE 245
            +E     +    ++++   L            ++ ++   + +S+  L          E
Sbjct: 276 RYEDVFGPMINEFIQITWNLLTSIS--------NQPKYDILVSKSLSFLTAVTRIPKYFE 327

Query: 246 DTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSK--TKVAHSTGDGSTVNNADS 303
                  +  +        + L  + +  +     + + +        T   +  +    
Sbjct: 328 IFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKE 387

Query: 304 GSGKVDSRKMRILSFLNDDISGAILDISFQRLVKREKAPGTQGPL----ELWSDDFEGKG 359
              K +     I            +    +    ++        L     + +       
Sbjct: 388 LKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTN 447

Query: 360 DFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAI--------------INSLLISTMPA 405
           +         + +    ++  +   +   + +  I              +  +L + +  
Sbjct: 448 NLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQT 507

Query: 406 QDLAVMESMQSALENVVS-AVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPL 464
            +  V       +E +++    + S  F     ++  S   + + L+  +L    + P  
Sbjct: 508 DEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHG-SSPEK 566

Query: 465 VVALGHYLDALGPFLKYYPDAVGGVISKLFELLTS-LPFVFKDPSTNSARHARLQICTSF 523
           +      + ++   L+   D++  +  +L       +  + K+PS     H   +   + 
Sbjct: 567 LAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAI 626

Query: 524 IRIAKTSDKSIL 535
           +   +  +  +L
Sbjct: 627 LNYTQRQNLPLL 638

PyMOL of d1wa5c_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1096
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.72
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.29
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.27
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.99
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.53
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.15
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.64
d1b3ua_		588	Constant regulatory domain of protein phosphatase	97.34
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.33
d1b3ua_		588	Constant regulatory domain of protein phosphatase	97.02
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.36
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	95.6
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	95.16
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	93.6

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.1e-19  Score=227.10  Aligned_cols=457  Identities=16%  Similarity=0.182  Sum_probs=277.2

Q ss_pred             hhHHHHHHHHHHHHHHHhhcccchhhHHHHHHHhhc-CChhHHHHHHHHHHhhhhhhcccccCchHHHHHHHHHHHHhhH
Q 001344           10 EWALKSQTAALVAEIVRREGINLWQELFPSLVSLSS-KGPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSL   88 (1096)
Q Consensus        10 ~~~irnkla~vlveIvkrewp~~Wp~fl~~L~~l~~-~~~~~~El~L~iL~~L~EDv~~~~edl~~~Rr~~ll~~L~~~~   88 (1096)
                      +..+|++++.+++.|++++||+.||++++.|.++.. .++..++.++.+|..++||+....+.-          .....+
T Consensus       101 ~~~vr~~~~~~i~~i~~~~~~~~Wpell~~L~~~l~s~~~~~~~~al~~L~~i~e~~~~~~~~~----------~~~~~~  170 (888)
T d1qbkb_         101 SPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSD----------VLDRPL  170 (888)
T ss_dssp             CSSTTTTTTTTTHHHHTTTSSCSSTTTSTTTTTSSTGGGSSCSSSSSTTTHHHHGGGHHHHHTC-------------CCS
T ss_pred             CHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhhHH----------HHHHHH
Confidence            456789999999999999999999999999998763 446677888888888888765311100          000000


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHHHHHHHHhccccCCcchhcccCcHHHHH--hhcCChhHhhHH
Q 001344           89 PEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCG--FLLSSPDFRLHA  166 (1096)
Q Consensus        89 p~I~~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L~--~ll~~~~~R~~A  166 (1096)
                      .                                                          .+++.+.  .-.+++.+|..|
T Consensus       171 ~----------------------------------------------------------~ll~~ll~~~~~~~~~vr~~a  192 (888)
T d1qbkb_         171 N----------------------------------------------------------IMIPKFLQFFKHSSPKIRSHA  192 (888)
T ss_dssp             T----------------------------------------------------------TTTHHHHTGGGSSSSCSSSTT
T ss_pred             H----------------------------------------------------------HHHHHHHHHhhCCCHHHHHHH
Confidence            0                                                          1222221  223457889999


Q ss_pred             HHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhhccccccc
Q 001344          167 CEFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIARED  246 (1096)
Q Consensus       167 ~ecL~~i~sr~~~~~~~~~~f~~~l~~i~~~~~~~~~~~~~~~~~~~~~~dE~~y~f~k~l~e~L~~lg~~~~~~~~~~~  246 (1096)
                      +.|+..++....  ..-...++.++..++..    +        .++      +.+..+..++.++.+.......+.   
T Consensus       193 l~~l~~~~~~~~--~~~~~~~~~~l~~l~~~----~--------~~~------~~~vr~~~~~~l~~l~~~~~~~l~---  249 (888)
T d1qbkb_         193 VACVNQFIISRT--QALMLHIDSFTENLFAL----A--------GDE------EPEVRKNVCRALVMLLEVRMDRLL---  249 (888)
T ss_dssp             THHHHGGGGCCC--STTCSHHHHCSHHHHTT----S--------SCC------CSSSTTHHHHTTTTTSCSCTTTTT---
T ss_pred             HHHHHHHHHhhh--HHHHHHHHHHHHHHHHh----c--------CCc------chHHHHHHHHHHHHHHHHhHHHHH---
Confidence            999998887652  22233445555444322    1        111      112344555555544333322221   


Q ss_pred             ccHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhhhccccccCCCCCcccCCCCCCCCcchhhhhh-------hhcc
Q 001344          247 TILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRI-------LSFL  319 (1096)
Q Consensus       247 ~~l~~~L~~lL~~t~hpsl~vs~~~l~~W~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~  319 (1096)
                      +.+...++.++..+++++..+...+++||.++.++...+.......+.+.+........+..+......       ....
T Consensus       250 ~~l~~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (888)
T d1qbkb_         250 PHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDS  329 (888)
T ss_dssp             TTTTTTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCCSSTTHHHHTTTSSCCTTSCCC
T ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHhhhhhhhhhhhhh
Confidence            234455667788888999999999999999887652222112222233222210000000000000000       0000


Q ss_pred             hhhhHHHHHHHHHHHhhcccCCCCCCC--CccccccccCChhhHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHhh
Q 001344          320 NDDISGAILDISFQRLVKREKAPGTQG--PLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINS  397 (1096)
Q Consensus       320 ~~~il~~Ll~~~~~rm~~~e~~~~~~~--~~e~~~~Dfd~~~ef~~~Rk~~~~ilr~i~~~~P~~~~~~l~~~l~~~l~~  397 (1096)
                      ..++.+.+..   .+............  ..+..+.+.++..+.|+.|+....+++.++...+...++.+.+.+...+.+
T Consensus       330 ~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~~~il~~~l~~l~~~l~s  406 (888)
T d1qbkb_         330 EQDIRPRFHR---SRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFH  406 (888)
T ss_dssp             GGGCCCCCCC---CCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCCSSSHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHH---HHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHhhcc
Confidence            0000000000   00000000000000  000111111122233789999999999999999988888888877766543


Q ss_pred             cccCCCChhhHHHHHhHHHHHHHHHHhhccCCCCCCCCChHHHHHHHHHHHHHHHHHH-hcCCCCchHHHHHHHHHHhhh
Q 001344          398 LLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLL-SLKWTEPPLVVALGHYLDALG  476 (1096)
Q Consensus       398 ~~~~~~~s~~~~~~ea~~~~leav~~g~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll-~~~~~dP~l~s~~~~~l~~l~  476 (1096)
                              +.|...|++..+++++.+|+.+...++              +.+++..++ .++..+|.+|...+|+++.|+
T Consensus       407 --------~~~~~reaa~~alg~i~eg~~~~~~~~--------------l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~  464 (888)
T d1qbkb_         407 --------HEWVVKESGILVLGAIAEGCMQGMIPY--------------LPELIPHLIQCLSDKKALVRSITCWTLSRYA  464 (888)
T ss_dssp             --------SSHHHHHHHHHHHHHHTTTSHHHHTTT--------------HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTH
T ss_pred             --------chhHHHHHHHHHhhhhhhhHHHHhccc--------------chhhhHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence                    357889999999999988876633222              233333333 247889999999999999999


Q ss_pred             hhhhcC--CCchhHHHHHHHHhhccCCCccCCCCchHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHcccc
Q 001344          477 PFLKYY--PDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRL  554 (1096)
Q Consensus       477 ~fl~~~--~~~l~~VL~klf~~l~~~p~~~~~~~~~~~k~vR~~A~~~f~rl~~~~~~~l~P~l~~i~~~i~~l~~~~~L  554 (1096)
                      .++...  ..++.+++..++..+.           +.+++||.+||.+|..+++.....+.||++.+.+.+..++.  ..
T Consensus       465 ~~~~~~~~~~~~~~~l~~ll~~l~-----------d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~--~~  531 (888)
T d1qbkb_         465 HWVVSQPPDTYLKPLMTELLKRIL-----------DSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFS--KY  531 (888)
T ss_dssp             HHHHSSCHHHHTTTHHHHHHHHHS-----------SSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTT--TC
T ss_pred             HHhhhhhhhhhhhhhHHHHHHHhc-----------CCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHh--hh
Confidence            877543  2466778888876653           13468999999999999999999999999999888876665  36


Q ss_pred             cHHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHhHHHHhhhch
Q 001344          555 LRGEHNLLGEAFLVMASAAGIQ-QQQEVLAWLLEPLSQQWMQ  595 (1096)
Q Consensus       555 ~~~e~~~L~Eal~~i~~~~~~~-~q~~~l~~ll~P~~~~W~~  595 (1096)
                      ....+..+++++.+++...+.. .+..+++.+++++...|..
T Consensus       532 ~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~  573 (888)
T d1qbkb_         532 QHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNM  573 (888)
T ss_dssp             CHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHh
Confidence            6778889999999998744443 4678899999999999864

PyMOL of d1qbkb_

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure