Citrus Sinensis ID: 001349
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1094 | 2.2.26 [Sep-21-2011] | |||||||
| C6L7U1 | 1485 | Putative E3 ubiquitin-pro | N/A | no | 0.849 | 0.625 | 0.432 | 0.0 | |
| D1FP53 | 1488 | Putative E3 ubiquitin-pro | N/A | no | 0.849 | 0.624 | 0.431 | 0.0 | |
| D1FP57 | 1485 | Putative E3 ubiquitin-pro | N/A | no | 0.849 | 0.625 | 0.427 | 0.0 | |
| Q0IMG9 | 694 | E3 ubiquitin-protein liga | no | no | 0.093 | 0.146 | 0.421 | 4e-16 | |
| A2ZLU6 | 694 | Protein spotted leaf 11 O | N/A | no | 0.093 | 0.146 | 0.421 | 4e-16 | |
| Q9SNC6 | 660 | U-box domain-containing p | no | no | 0.072 | 0.119 | 0.5 | 5e-16 | |
| Q8GUG9 | 612 | U-box domain-containing p | no | no | 0.084 | 0.150 | 0.443 | 2e-15 | |
| Q9C9A6 | 628 | U-box domain-containing p | no | no | 0.068 | 0.119 | 0.5 | 5e-15 | |
| Q5VRH9 | 611 | U-box domain-containing p | no | no | 0.170 | 0.304 | 0.319 | 7e-15 | |
| Q8VZ40 | 632 | U-box domain-containing p | no | no | 0.169 | 0.292 | 0.307 | 2e-14 |
| >sp|C6L7U1|LIN1_LOTJA Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus GN=CERBERUS PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 746 bits (1926), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/979 (43%), Positives = 601/979 (61%), Gaps = 50/979 (5%)
Query: 160 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYV 219
PPKDFVCPIT IF DPVTLETGQTYER+AIQEW+ GN++CPITRQ LS++ LPKTNYV
Sbjct: 511 PPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLRTGNTTCPITRQPLSASILPKTNYV 570
Query: 220 LKRLIASWQEQNPG-GLDLSH-SEPMSKSIVPS--------------------------- 250
LKRLI SW+EQNP + S+ + P S PS
Sbjct: 571 LKRLITSWKEQNPELAQEFSNVNTPRGSSCSPSAKDIPMLSTRQRTTDSPNHKNKDYARQ 630
Query: 251 -----------NSPNSVISQATIDGTITELKHAITSLCMSEILNESEMAVLQIERCWLEA 299
SP SV+SQA ++ + LK I+SLC SE L E E AVL+I R ++
Sbjct: 631 RSNRFMPAAITTSPTSVLSQAAVETIVNSLKPYISSLCTSENLPECEEAVLKIARLLKDS 690
Query: 300 SMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDV 359
I LSKP +ING VEIL S + VL +I++LSEL D SV TL V+SD
Sbjct: 691 KTNPQIHSYLSKPTIINGLVEILSASRNREVLRTSIYILSELIFTDDSVAETLNSVDSDF 750
Query: 360 ERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEE--DFLKMCLKPKSV 417
+ + L K GL EA +LI LRP L +++ SL+ VI+ K E D ++ + PK
Sbjct: 751 DCLATLLKNGLAEAALLIYQLRPVFAQLSAHELIPSLVDVIQNKNEELDDFQLVIDPKDA 810
Query: 418 SVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDG 477
++ +L Q + +E S A++++S+ +++ LE E R + V +LL CMQ +
Sbjct: 811 AIAILEQTLMGGDEYSRSLNASSVISANGIPTLVKYLER--MEGRRSVVSVLLCCMQAEK 868
Query: 478 KCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYS 537
C+N IA++ EL+PV+E F + +D R V FLSELV+LNRRT QILH IKDEG +S
Sbjct: 869 SCKNLIANRIELSPVLELFHSGNDSVRGTCVEFLSELVQLNRRTSCNQILHTIKDEGAFS 928
Query: 538 SMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQ 597
+MHT LVYLQ A + VA LLLQLDLLAEPRKMSIYREEA++TLI L D+ Q
Sbjct: 929 TMHTFLVYLQMAPMEHQLAVASLLLQLDLLAEPRKMSIYREEAVETLIEALWQKDFSNTQ 988
Query: 598 LAAAKTIVSLQGRFTTSGKSLTRAMLLKRAGVGKSYKNLTRTEQIGNICGEDDDTSEEEK 657
+ A ++ L G ++SGKS T A LLK AG + Y L + EQ+G + +T E+EK
Sbjct: 989 MKALDALLFLIGHISSSGKSYTEAWLLKIAGFDQPYNALMKVEQLGQHDNDLIETMEDEK 1048
Query: 658 AA-DDWERKMALVLVSHDFGLLFEALEEGLNSRFAELYSACFESATWLIYMLNFLPDTGI 716
A + W++++A VL +H+ G +F+ALEE L S ++ +C ATWL +ML LPDTG+
Sbjct: 1049 NALNSWQKRIASVLCNHENGSIFKALEECLKSNSLKMAKSCLVLATWLTHMLYTLPDTGV 1108
Query: 717 FGAARVSLLKRFISAFKSANDIDDRALSLLALNSFAQDPQGLRDINIHMKDIMKGLRELR 776
AR SLL+ I+ +S+ +++++ L+ LAL +F DP + ++ K I + LR L+
Sbjct: 1109 RDVARKSLLEEVINVLQSSKNLEEKILATLALKTFISDPSTHEALRVYAKSIYRTLRRLK 1168
Query: 777 KYSPLAFEMVKVLSNGHD-SSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTI 835
KYS +A +++KV+ N + W+ +E+V +D S NG+VLS+ ++ SGH+DGTI
Sbjct: 1169 KYSVVAVDIMKVILNLKSVDVTELWSCKEVVELDLSSNGEVLSMVYLNGQVLSGHTDGTI 1228
Query: 836 KVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVH 895
KVW R I +IQ+ EHTKAVT L SG+ LYSGSLDKT RVW+I ++ I C+ V+
Sbjct: 1229 KVWDARKRIPRVIQETHEHTKAVTSLC--SSGDRLYSGSLDKTIRVWTIKSDGIKCIDVY 1286
Query: 896 DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDG 955
DIK+ + LA ++ + C++ QG G+KV + KL+N SKY K LA+ K+YCGC
Sbjct: 1287 DIKEAVHELAANDKLACYVSQGTGVKVFNWSEAPKLINFSKYVKSLAVAGDKLYCGCSGY 1346
Query: 956 AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN 1015
+IQE+DL+T T + TG RKLLGK +H+LQ+H+ ++ +S+D A K++S S
Sbjct: 1347 SIQEVDLSTYTSNSFFTGTRKLLGKQT-IHSLQIHDDYLFACGSSVDATAGKIFSLSQKM 1405
Query: 1016 MVGSLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQ-TGTSGKVQCMALDD 1074
+VGSL T ++ + ++S+ ++ G K GT+E+W + + R+ +++ G K+ + D
Sbjct: 1406 VVGSLSTGLDIHRIAINSDFIFAGTKFGTIEVWLKDKFTRVASIKMAGGHTKITSLVSDV 1465
Query: 1075 NEEFLVIGTSDGRIQAWGL 1093
+ L +G+SDG+IQ W L
Sbjct: 1466 DGMMLFVGSSDGKIQVWAL 1484
|
Putative E3 ubiquitin-protein ligase involved in the rhizobial infection process. Plays an important role in the early steps of infection thread formation and in growth and differentiation of nodules. Lotus japonicus (taxid: 34305) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: - |
| >sp|D1FP53|LIN_MEDTR Putative E3 ubiquitin-protein ligase LIN OS=Medicago truncatula GN=LIN PE=2 SV=1 | Back alignment and function description |
|---|
Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/980 (43%), Positives = 606/980 (61%), Gaps = 51/980 (5%)
Query: 160 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYV 219
PPKDFVCPIT IF DPVTLETGQTYER+AIQEW+ GN++CPITRQ LS+ LPKTNYV
Sbjct: 513 PPKDFVCPITGQIFSDPVTLETGQTYERKAIQEWLGTGNTTCPITRQALSANILPKTNYV 572
Query: 220 LKRLIASWQEQNPG-GLDLSHSE--------PMSKSIV-----------PSN-------- 251
LKRLI SW+EQNP + S+S P +K I PS
Sbjct: 573 LKRLIVSWKEQNPELAQEFSNSNTPRGSSCSPSAKDITMVSSIQRTTDSPSQKYKDDYIR 632
Query: 252 -------------SPNSVISQATIDGTITELKHAITSLCMSEILNESEMAVLQIERCWLE 298
SP SV+SQA ++ I L ITSLC SE L + E AVL+I R W +
Sbjct: 633 QRNNRFTRVSVGASPTSVLSQAAVETIINSLTPYITSLCTSENLQDCEQAVLEIARLWKD 692
Query: 299 ASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESD 358
+ + I LSKP V++G VEIL S++ VL +I++LSEL D+ V TL V+SD
Sbjct: 693 SKTDPQIHSYLSKPTVVSGLVEILSASLNREVLRRSIYILSELIFSDERVGETLNSVDSD 752
Query: 359 VERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDF--LKMCLKPKS 416
+ + L K GL EA +LI LRP L E +++ SL+ VI+ K ED ++ + PK+
Sbjct: 753 FDCLAMLLKNGLAEAALLIYQLRPVFAQLSEHELIPSLIQVIQNKSEDIDDFQLAIDPKA 812
Query: 417 VSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQED 476
++ +L Q++ +E S A++++S+ +++ L+ E R + ILL CMQ +
Sbjct: 813 AAIAILEQILIGGDEYNRSVNASSVISANGIPAIVKYLDK--TEGRRPVISILLCCMQAE 870
Query: 477 GKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTY 536
C++SIA++ EL+PV+E F A +D R V FLSELV+LNRRT + Q L IIKDEG +
Sbjct: 871 KSCKSSIANRIELSPVLELFHAGNDSVRGICVEFLSELVRLNRRTSSNQTLQIIKDEGAF 930
Query: 537 SSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAA 596
S+MHT LVYLQ A + VA LLLQLDLLAEPRKMSIYREEA++TLI L D+
Sbjct: 931 STMHTFLVYLQMAPMEHQIAVASLLLQLDLLAEPRKMSIYREEAVETLIEALWQKDFSNN 990
Query: 597 QLAAAKTIVSLQGRFTTSGKSLTRAMLLKRAGVGKSYKNLTRTEQIGNICGEDDDTSEEE 656
Q+ A ++ L G T+SGKS T A LLK AG + Y L + EQ+G+ + +T E+E
Sbjct: 991 QMKALDALLFLIGHVTSSGKSYTEAGLLKIAGFDQPYNVLMKAEQLGHSDNDFMETMEDE 1050
Query: 657 K-AADDWERKMALVLVSHDFGLLFEALEEGLNSRFAELYSACFESATWLIYMLNFLPDTG 715
K A W++++A VL +H+ G +F+ALEE L S ++ +C ATWL +ML LPDTG
Sbjct: 1051 KNAMKSWQKRVASVLCNHENGSIFQALEECLKSNSLKMAKSCLVLATWLTHMLFTLPDTG 1110
Query: 716 IFGAARVSLLKRFISAFKSANDIDDRALSLLALNSFAQDPQGLRDINIHMKDIMKGLREL 775
+ AR SLL+ ++ +S+ +++++ L+ LAL SF DP + ++ K I + LR+L
Sbjct: 1111 VRDVARKSLLEALMNVLQSSKNLEEKILASLALKSFISDPTVHEVLRVYAKSIYRILRKL 1170
Query: 776 RKYSPLAFEMVKVLSNGHD-SSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGT 834
+KYS +A +++K L N + + W+ +E+V +D S NG+VLS+ ++ SGH+DGT
Sbjct: 1171 KKYSTVAADILKALLNLNSVDVTELWSCKEVVELDLSSNGEVLSLHYLNGQVLSGHADGT 1230
Query: 835 IKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQV 894
IKVW R I +IQ+ REH KAVT L S + LYS SLDKT RVW+I + I C+ V
Sbjct: 1231 IKVWDARKRIPRVIQETREHKKAVTSLC--SSVDKLYSSSLDKTIRVWTIKPDGIKCIDV 1288
Query: 895 HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQD 954
+D+K+ + LA + + C++ QG G+KV K +N +KY KCLA+ K+YCGC
Sbjct: 1289 YDVKEAVYELAANAKLACYVTQGTGVKVFNWLDAPKFINFNKYVKCLAVSGDKLYCGCSG 1348
Query: 955 GAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY 1014
+IQE+DL+ T + TG RKLLGK +H+LQ+H+ L++ +S+D A K++S S+
Sbjct: 1349 YSIQEVDLSKYTSTSFFTGTRKLLGKQT-IHSLQIHDDLLFACGSSIDATAGKIFSLSSK 1407
Query: 1015 NMVGSLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQ-TGTSGKVQCMALD 1073
+VGSL T +V + ++S+ ++ G K GT+E+W + + R+ +++ G + K+ +A D
Sbjct: 1408 MVVGSLSTGLDVHRVAINSDFIFAGTKFGTIEVWLKDKFTRVASIKMAGGNTKITSLASD 1467
Query: 1074 DNEEFLVIGTSDGRIQAWGL 1093
+ L +G+SDG+IQ W L
Sbjct: 1468 ADGMMLFVGSSDGKIQVWAL 1487
|
Putative E3 ubiquitin ligase involved in the rhizobial infection process. Plays an important role in the early steps of infection thread formation and in growth and differentiation of nodules. Medicago truncatula (taxid: 3880) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|D1FP57|LIN2_LOTJA Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus japonicus GN=LIN PE=1 SV=1 | Back alignment and function description |
|---|
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/979 (42%), Positives = 590/979 (60%), Gaps = 50/979 (5%)
Query: 160 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYV 219
PPKDFVCPIT IF DPVTLETGQTYER+AIQEW+ GN++CPITRQ LS++ LPKTNYV
Sbjct: 511 PPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLRTGNTTCPITRQPLSASILPKTNYV 570
Query: 220 LKRLIASWQEQNPG-GLDLSH-SEPMSKSIVPS--------------------------- 250
LKRLI SW+EQNP + S+ + P S PS
Sbjct: 571 LKRLITSWKEQNPELAQEFSNVNTPRGSSCSPSAKDIPMLSTRQRTTDSPNHKNKDYARQ 630
Query: 251 -----------NSPNSVISQATIDGTITELKHAITSLCMSEILNESEMAVLQIERCWLEA 299
SP SV+SQA ++ + LK I+SLC SE L E E AVL+I R ++
Sbjct: 631 RSNRFMPAAITTSPTSVLSQAAVETIVNSLKPYISSLCTSENLPECEEAVLKIARLLKDS 690
Query: 300 SMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDV 359
I LSKP +ING VEIL S + VL +I++LSEL D SV TL V+SD
Sbjct: 691 KTNPQIHSYLSKPTIINGLVEILSASRNREVLRTSIYILSELIFTDDSVAETLNSVDSDF 750
Query: 360 ERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEE--DFLKMCLKPKSV 417
+ + L K GL EA +LI LRP L +++ SL+ VI+ K E D ++ + PK
Sbjct: 751 DCLATLLKNGLAEAALLIYQLRPVFAQLSAHELIPSLVDVIQNKNEELDDFQLVIDPKDA 810
Query: 418 SVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDG 477
++ +L Q + +E S A++++S+ +++ LE E R + V +LL CMQ +
Sbjct: 811 AIAILEQTLMGGDEYSRSLNASSVISANGIPTLVKYLER--MEGRRSVVSVLLCCMQAEK 868
Query: 478 KCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYS 537
C+N IA++ EL+PV+E F + +D R V FLSELV+LNRRT Q+LH IKDEG +S
Sbjct: 869 SCKNLIANRIELSPVLELFHSGNDSVRGTCVEFLSELVQLNRRTSCNQLLHTIKDEGAFS 928
Query: 538 SMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQ 597
+MHT LVYLQ A + VA LLLQLDLLAEPRKMSIYREEA++TLI L D+ Q
Sbjct: 929 TMHTFLVYLQMAPMEHQLAVASLLLQLDLLAEPRKMSIYREEAVETLIEALWQKDFSNTQ 988
Query: 598 LAAAKTIVSLQGRFTTSGKSLTRAMLLKRAGVGKSYKNLTRTEQIGNICGEDDDTSEEEK 657
+ A ++ L G ++SGKS T A LLK AG + Y L + EQ+G + +T E+EK
Sbjct: 989 MKALDALLFLIGHISSSGKSYTEAWLLKIAGFDQPYNALMKVEQLGQHDNDLIETMEDEK 1048
Query: 658 AA-DDWERKMALVLVSHDFGLLFEALEEGLNSRFAELYSACFESATWLIYMLNFLPDTGI 716
A + W++++A VL +H+ G +F+ALEE L S ++ +C ATWL ML LPDTG+
Sbjct: 1049 NALNSWQKRIASVLCNHENGSIFKALEECLKSNSLKMAKSCLVLATWLTRMLYTLPDTGV 1108
Query: 717 FGAARVSLLKRFISAFKSANDIDDRALSLLALNSFAQDPQGLRDINIHMKDIMKGLRELR 776
AR SLL+ I S+ ++D L L+L F DP + ++ K I + LR+L+
Sbjct: 1109 RDVARKSLLEEVIKVLHSSKSLEDMILVTLSLYPFISDPTVHEVLRVYAKSIYRILRKLK 1168
Query: 777 KYSPLAFEMVKVLSNGHD-SSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTI 835
KYS +A +++K L N + + W+ +E+V +D S NG+VLS+ ++ SG DGT
Sbjct: 1169 KYSTVAADILKALLNLNSVDVTELWSCKEVVELDLSSNGEVLSLHYLNGQVLSGLMDGTS 1228
Query: 836 KVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVH 895
KV R I +IQ+ EHTKAVT L SG+ LYS SLDKT RVW+I ++ I C+ V+
Sbjct: 1229 KVCDARKRIPRVIQETHEHTKAVTSLC--SSGDRLYSASLDKTIRVWTIKSDGIKCIDVY 1286
Query: 896 DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDG 955
DIK+ + LA ++ + C++ QG G+KV + KL+N SKY K LA+ K+YCGC
Sbjct: 1287 DIKEAVHELAANDKLACYVSQGTGVKVFNWSEAPKLINFSKYVKSLAVAGDKLYCGCSGY 1346
Query: 956 AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN 1015
+IQE+DL+T T + TG RKLLGK +H+LQ+H+ ++ +S+D A K++S S
Sbjct: 1347 SIQEVDLSTYTSNSFFTGTRKLLGKQT-IHSLQIHDDYLFACVSSVDATAGKIFSLSQKM 1405
Query: 1016 MVGSLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQ-TGTSGKVQCMALDD 1074
+VGSL T ++ + ++S+ ++ G K GT+E+W + + R+ ++Q G K+ + D
Sbjct: 1406 VVGSLSTGLDIHRIAINSDFIFAGTKFGTIEVWLKDKFTRVASIQMAGGHTKITSLVSDV 1465
Query: 1075 NEEFLVIGTSDGRIQAWGL 1093
+ L +G+SDG+IQ W L
Sbjct: 1466 DGMMLFVGSSDGKIQVWAL 1484
|
Putative E3 ubiquitin-protein ligase involved in the rhizobial infection process. Plays an important role in the early steps of infection thread formation and in growth and differentiation of nodules. Lotus japonicus (taxid: 34305) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 68/114 (59%), Gaps = 12/114 (10%)
Query: 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNY 218
T P +F CPI+ + DPV + TGQTYER I++WI G+ +CP T+QK+S++ L NY
Sbjct: 272 TIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSAL-TPNY 330
Query: 219 VLKRLIASWQEQNPGGLDLSHSEPMSKSIVPSNSPNSVIS---QATIDGTITEL 269
VL+ LI+ W E N G+ EP +S P N P S +A ID +++L
Sbjct: 331 VLRSLISQWCETN--GM-----EPPKRSTQP-NKPTPACSSSERANIDALLSKL 376
|
E3 ubiquitin-protein ligase that negatively regulates programmed cell death and disease resistance. Participates in flowering time control by mediating ubiquitination and subsequent proteasomal degradation of SPIN1. Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|A2ZLU6|SL11_ORYSI Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 68/114 (59%), Gaps = 12/114 (10%)
Query: 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNY 218
T P +F CPI+ + DPV + TGQTYER I++WI G+ +CP T+QK+S++ L NY
Sbjct: 272 TIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSAL-TPNY 330
Query: 219 VLKRLIASWQEQNPGGLDLSHSEPMSKSIVPSNSPNSVIS---QATIDGTITEL 269
VL+ LI+ W E N G+ EP +S P N P S +A ID +++L
Sbjct: 331 VLRSLISQWCETN--GM-----EPPKRSTQP-NKPTPACSSSERANIDALLSKL 376
|
Defense related protein that negatively regulates programmed cell death. In vitro, possesses E3 ubiquitin ligase activity. Oryza sativa subsp. indica (taxid: 39946) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 55/84 (65%), Gaps = 5/84 (5%)
Query: 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVL 220
P DF CPI+ + DPV + +GQTYER I++WIE G+S+CP T+Q L+ST L NYVL
Sbjct: 257 PDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCPKTQQALTSTTL-TPNYVL 315
Query: 221 KRLIASWQEQNPGGLDLSHSEPMS 244
+ LIA W E N D+ +P S
Sbjct: 316 RSLIAQWCEAN----DIEPPKPPS 335
|
Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q8GUG9|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 142 DHLIMADADNPPGIGKHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSC 201
D ++ + D K T P DF+CP++ + DPV + TGQTYER IQ WI+ GN +C
Sbjct: 223 DKMVNKNTDESKKSDKLTIPVDFLCPVSLELMKDPVIVATGQTYERAYIQRWIDCGNLTC 282
Query: 202 PITRQKLSSTKLPKTNYVLKRLIASW-QEQN---PGG 234
P T+QKL + L NYVL+ LI+ W E N P G
Sbjct: 283 PKTQQKLENFTLTP-NYVLRSLISRWCAEHNIEQPAG 318
|
Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9C9A6|PUB10_ARATH U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 51/80 (63%), Gaps = 5/80 (6%)
Query: 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNY 218
T P+DF+CPI+ + DP + TGQTYER IQ WI+ GN SCP T+QKL + L NY
Sbjct: 242 TIPEDFLCPISLELMKDPAIVSTGQTYERSFIQRWIDCGNLSCPKTQQKLENFTL-TPNY 300
Query: 219 VLKRLIASW----QEQNPGG 234
VL+ LI+ W + PGG
Sbjct: 301 VLRSLISQWCTKHNIEQPGG 320
|
Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 83.6 bits (205), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 108/219 (49%), Gaps = 33/219 (15%)
Query: 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVL 220
P +F CPI+ + DPV + +GQTYER IQ+W++ G+ +CP T+Q LS T L N+VL
Sbjct: 229 PDEFRCPISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQPLSHTSL-TPNFVL 287
Query: 221 KRLIASWQEQNPGGLDLSHSEPMSKSIVPSNSPNSVISQATIDGTITELKHAITSLCMSE 280
K LI+ W E N G++L P N NS +A ++ HA M+
Sbjct: 288 KSLISQWCEAN--GIEL-----------PKNKQNSRDKKA---AKSSDYDHAGLVSLMNR 331
Query: 281 IL----NESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIF 336
+ +E A +I L A ++ +I +++ I V +L +S DPR E +
Sbjct: 332 LRSGNQDEQRAAAGEIR---LLAKRNVNNRICIAEAGAIPLLVNLLSSS-DPRTQEHAVT 387
Query: 337 LLSELG--SRDKSVIHTLTRVESD-VERIVALFKKGLLE 372
L L +K+ I V+S + +IV + K G +E
Sbjct: 388 ALLNLSIHENNKASI-----VDSHAIPKIVEVLKTGSME 421
|
Possesses E3 ubiquitin-protein ligase in vitro. Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 104/208 (50%), Gaps = 23/208 (11%)
Query: 142 DHLIMADADNPPGIG-----KH-TP--PKDFVCPITTHIFDDPVTLETGQTYERRAIQEW 193
D + M +D P G +H +P P+ F CPI+ + DPV + TGQTYER +IQ+W
Sbjct: 222 DFVTMESSDPDPSTGSRIVSRHRSPVIPEYFRCPISLELMKDPVIVSTGQTYERSSIQKW 281
Query: 194 IERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGGLDLSHSEPMSKSIVPSNSP 253
++ G+ +CP +++ L L NYVLK LIA W E N G++L ++ ++ S
Sbjct: 282 LDAGHKTCPKSQETLLHAGL-TPNYVLKSLIALWCESN--GIELPQNQGSCRTTKIGGSS 338
Query: 254 NSVISQATIDGTITELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPA 313
+S + + + +L + T E + A R L A +D ++ +++
Sbjct: 339 SSDCDRTFVLSLLEKLANGTT---------EQQRAAAGELR--LLAKRNVDNRVCIAEAG 387
Query: 314 VINGFVEILFNSVDPRVLEATIFLLSEL 341
I VE+L +S DPR E ++ L L
Sbjct: 388 AIPLLVELL-SSPDPRTQEHSVTALLNL 414
|
Functions as an E3 ubiquitin ligase with specific E2 ubiquitin-conjugating enzymes. Undergoes auto-ubiquitination. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1094 | ||||||
| 147852653 | 1618 | hypothetical protein VITISV_002973 [Viti | 0.997 | 0.674 | 0.661 | 0.0 | |
| 297738795 | 1154 | unnamed protein product [Vitis vinifera] | 0.900 | 0.853 | 0.731 | 0.0 | |
| 356511369 | 1421 | PREDICTED: uncharacterized protein LOC10 | 0.886 | 0.682 | 0.633 | 0.0 | |
| 356527773 | 1492 | PREDICTED: uncharacterized protein LOC10 | 0.873 | 0.640 | 0.639 | 0.0 | |
| 357520957 | 1068 | U-box domain-containing protein [Medicag | 0.880 | 0.901 | 0.632 | 0.0 | |
| 449449627 | 1336 | PREDICTED: putative E3 ubiquitin-protein | 0.921 | 0.754 | 0.582 | 0.0 | |
| 326507154 | 1375 | predicted protein [Hordeum vulgare subsp | 0.854 | 0.68 | 0.536 | 0.0 | |
| 357127715 | 1418 | PREDICTED: uncharacterized protein LOC10 | 0.850 | 0.655 | 0.517 | 0.0 | |
| 242051493 | 1404 | hypothetical protein SORBIDRAFT_03g00087 | 0.858 | 0.668 | 0.503 | 0.0 | |
| 414875638 | 1398 | TPA: hypothetical protein ZEAMMB73_57674 | 0.884 | 0.692 | 0.480 | 0.0 |
| >gi|147852653|emb|CAN83797.1| hypothetical protein VITISV_002973 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1498 bits (3879), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 761/1150 (66%), Positives = 910/1150 (79%), Gaps = 59/1150 (5%)
Query: 2 RDDVSVVVPCAKLLSKMSGSQASELKELERNYEELLDENCRVFASYFKQVLENSNDSGLI 61
R + SVVV +LLSKMSG Q SELK LER+YEE+LDENCR+ YF++VL N N S LI
Sbjct: 471 RFEESVVVSGTRLLSKMSGGQTSELKXLERDYEEVLDENCRLLVGYFREVLGNENGSRLI 530
Query: 62 IVTPPSVVLRKIEKVGGLHFDSEIESSLDK------HLNNSSYSSSDSDAE--ATDEQKN 113
PPS++ K K F+ + ++ +++ NN +++ + E ++
Sbjct: 531 --RPPSLIFEKXRKSDEFKFNEDEQNKVEEIGLGNGRYNNPTWTEGERSVEFYSSGSSSK 588
Query: 114 IRMASLEPRQ---RQIRKQKQP-----------------------------------IFV 135
+ P++ + +R QK I++
Sbjct: 589 SKSPPFYPQRVSLKILRNQKSSRTLSAISXNLNSGSELESSSEDNLSNSSSESEGSYIWI 648
Query: 136 ESSCSPDHLIM-ADADNPPGIGKHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWI 194
S +M AD+D+PPG GK TPPKDF+CPIT+HIFDDPVTLETGQTYER+AIQEWI
Sbjct: 649 FPVISSPERVMAADSDDPPGGGKCTPPKDFICPITSHIFDDPVTLETGQTYERKAIQEWI 708
Query: 195 ERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGGLDLSHSEPMSKS-------- 246
+RGNS+CPITRQKL ST+LPKTNYVLKRLIASWQEQNPG + + P ++
Sbjct: 709 DRGNSTCPITRQKLHSTQLPKTNYVLKRLIASWQEQNPGFISIHSDNPDPETDPIFNSTL 768
Query: 247 -IVPSNSPNSV-ISQATIDGTITELKHAITSLCMSEILNESEMAVLQIERCWLEASMELD 304
++PS SPNSV ISQAT+DGTI EL+ AIT LCMSEIL ESE AVL+IER W E +M L+
Sbjct: 769 PVLPSTSPNSVIISQATMDGTICELRLAITKLCMSEILRESEKAVLRIERFWQEMNMGLE 828
Query: 305 IQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVA 364
IQ MLSKPAVINGFVEILFNSVDPRVL AT+FLL ELGSRDK+VI TLTRV+SDVE IVA
Sbjct: 829 IQTMLSKPAVINGFVEILFNSVDPRVLRATVFLLCELGSRDKTVIQTLTRVDSDVECIVA 888
Query: 365 LFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQ 424
LFK GLLEAVVLI LLRPST +LIEMDM+ESL+ VIKKK++ FL+MCLKPK+ S+LLLGQ
Sbjct: 889 LFKNGLLEAVVLIHLLRPSTISLIEMDMVESLLVVIKKKQDGFLEMCLKPKTASILLLGQ 948
Query: 425 MIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIA 484
++G SE +IV+SIA T+VS+K +S++ SLEAEWAEERIAAVGILLRCMQEDGKCR++IA
Sbjct: 949 ILGSSEGNIVTSIAKTVVSAKAIKSIVESLEAEWAEERIAAVGILLRCMQEDGKCRHTIA 1008
Query: 485 DKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLV 544
DKAELAPV+ESFM ASDGERFEI+ F SELVKLNRRTFNEQ+LHIIKDEG +S+MHTLL+
Sbjct: 1009 DKAELAPVLESFMGASDGERFEIINFFSELVKLNRRTFNEQVLHIIKDEGAFSTMHTLLI 1068
Query: 545 YLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTI 604
YLQTA DQCPVVAGLLLQLDLL EPRKMSIYREEA+DTLISCLRNSD+PAAQ+AAA+TI
Sbjct: 1069 YLQTALQDQCPVVAGLLLQLDLLVEPRKMSIYREEAMDTLISCLRNSDFPAAQIAAAETI 1128
Query: 605 VSLQGRFTTSGKSLTRAMLLKRAGVGKSYKNLTRTEQIGNICGEDDDTSEEEKAADDWER 664
VSLQGRF++SGKSLTRA LLKRAG+ KSY+ L + +Q+ N GE ++ EEE+AAD+WER
Sbjct: 1129 VSLQGRFSSSGKSLTRASLLKRAGLDKSYRTLMQVDQLSNSSGESEENLEEEQAADEWER 1188
Query: 665 KMALVLVSHDFGLLFEALEEGLNSRFAELYSACFESATWLIYMLNFLPDTGIFGAARVSL 724
KMA VLVSH+FGLLFEAL EGL SR EL+S+CF SATWLI+ML LPDTGI GAARV L
Sbjct: 1189 KMAFVLVSHEFGLLFEALAEGLRSRNQELFSSCFMSATWLIHMLTVLPDTGIRGAARVCL 1248
Query: 725 LKRFISAFKSANDIDDRALSLLALNSFAQDPQGLRDINIHMKDIMKGLRELRKYSPLAFE 784
LK FIS FKSA +++ALS+LAL+SF DP+GL D+ HMKDI+KGLR+L+K LA +
Sbjct: 1249 LKHFISMFKSAKGTEEKALSMLALSSFIHDPEGLNDLTSHMKDILKGLRQLKKSCILAVD 1308
Query: 785 MVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSI 844
M+KV S G++SS D WNH+ELV VD S NG+VLSI CFRDKIFSGHSDGTIKVWTGRGSI
Sbjct: 1309 MLKVFSEGNNSSIDLWNHKELVQVDCSANGEVLSIVCFRDKIFSGHSDGTIKVWTGRGSI 1368
Query: 845 LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNL 904
LHLI + REHTKAVT LAIL+SGE LYSGSLD+TAR+WSIG+E I+CVQ HD+KDQ+ NL
Sbjct: 1369 LHLIHETREHTKAVTSLAILESGERLYSGSLDRTARIWSIGSEAIYCVQXHDMKDQVNNL 1428
Query: 905 AVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT 964
V+NSI CFIPQGAG+KVH NG++KLLN +K KCL LV GK+YCGC D +IQEIDLAT
Sbjct: 1429 VVANSIACFIPQGAGVKVHSWNGRSKLLNPNKNVKCLTLVHGKLYCGCHDNSIQEIDLAT 1488
Query: 965 GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLS 1024
GT ++IQ+G RKLLGK+NPVHALQVH+G++Y++S SLDGAAVK+WS +NY+MVGSL +
Sbjct: 1489 GTLSSIQSGTRKLLGKSNPVHALQVHDGMIYSSSFSLDGAAVKIWSATNYSMVGSLASTM 1548
Query: 1025 EVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTS 1084
EVR + VSSEL+YLG K GTVEIW +K+ IR+ETLQTGT+GKVQCMA+D +EE LV+GTS
Sbjct: 1549 EVRTLAVSSELIYLGSKSGTVEIWCRKKLIRVETLQTGTNGKVQCMAVDGDEEVLVVGTS 1608
Query: 1085 DGRIQAWGLS 1094
DGRIQAW LS
Sbjct: 1609 DGRIQAWELS 1618
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738795|emb|CBI28040.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1489 bits (3856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 728/995 (73%), Positives = 856/995 (86%), Gaps = 10/995 (1%)
Query: 110 EQKNIRMASLEPRQRQIRKQKQPIFVESSCSPDHLIMADADNPPGIGKHTPPKDFVCPIT 169
++KN +MA EPR+ QI+KQKQPI+ ESS SP+ ++ AD+D+PPG GK TPPKDF+CPIT
Sbjct: 160 QKKNRKMALFEPRRSQIQKQKQPIYAESSSSPERVMAADSDDPPGGGKCTPPKDFICPIT 219
Query: 170 THIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQE 229
+HIFDDPVTLETGQTYER+AIQEWI+RGNS+CPITRQKL ST+LPKTNYVLKRLIASWQE
Sbjct: 220 SHIFDDPVTLETGQTYERKAIQEWIDRGNSTCPITRQKLHSTQLPKTNYVLKRLIASWQE 279
Query: 230 QNPGGLDLSHSEPMSKS---------IVPSNSPNSVI-SQATIDGTITELKHAITSLCMS 279
QNPG + + P ++ ++PS SPNSVI SQAT+DGTI EL+ AIT LCMS
Sbjct: 280 QNPGFISIHSDNPDPETDPIFNSTLPVLPSTSPNSVIISQATMDGTICELRLAITKLCMS 339
Query: 280 EILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLS 339
EIL ESE AVL+IER W E +M L+IQ MLSKPAVINGFVEILFNSVDPRVL AT+FLL
Sbjct: 340 EILRESEKAVLRIERFWQEMNMGLEIQTMLSKPAVINGFVEILFNSVDPRVLRATVFLLC 399
Query: 340 ELGSRDKSVIHTLTRVESDVERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTV 399
ELGSRDK+VI TLTRV+SDVE IVALFK GLLEAVVLI LLRPST +LIEMDM+ESL+ V
Sbjct: 400 ELGSRDKTVIQTLTRVDSDVECIVALFKNGLLEAVVLIHLLRPSTISLIEMDMVESLLVV 459
Query: 400 IKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWA 459
IKKK++ FL+MCLKPK+ S+LLLGQ++G SE +IV+SIA T+VS+K +S++ SLEAEWA
Sbjct: 460 IKKKQDGFLEMCLKPKTASILLLGQILGSSEGNIVTSIAKTVVSAKAIKSIVESLEAEWA 519
Query: 460 EERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNR 519
EERIAAVGILLRCMQEDGKCR++IADKAELAPV+ESFM ASDGERFEI+ F SELVKLNR
Sbjct: 520 EERIAAVGILLRCMQEDGKCRHTIADKAELAPVLESFMGASDGERFEIINFFSELVKLNR 579
Query: 520 RTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREE 579
RTFNEQ+LHIIKDEG +S+MHTLL+YLQTA DQCPVVAGLLLQLDLL EPRKMSIYREE
Sbjct: 580 RTFNEQVLHIIKDEGAFSTMHTLLIYLQTALQDQCPVVAGLLLQLDLLVEPRKMSIYREE 639
Query: 580 AIDTLISCLRNSDYPAAQLAAAKTIVSLQGRFTTSGKSLTRAMLLKRAGVGKSYKNLTRT 639
A+DTLISCLRNSD+PAAQ+AAA+TIVSLQGRF++SGKSLTRA LLKRAG+ KSY+ L +
Sbjct: 640 AMDTLISCLRNSDFPAAQIAAAETIVSLQGRFSSSGKSLTRASLLKRAGLDKSYRTLMQV 699
Query: 640 EQIGNICGEDDDTSEEEKAADDWERKMALVLVSHDFGLLFEALEEGLNSRFAELYSACFE 699
+Q+ N GE ++ EEE+AAD+WERKMA VLVSH+FGLLFEAL EGL SR EL+S+CF
Sbjct: 700 DQLSNSSGESEENLEEEQAADEWERKMAFVLVSHEFGLLFEALAEGLRSRNQELFSSCFL 759
Query: 700 SATWLIYMLNFLPDTGIFGAARVSLLKRFISAFKSANDIDDRALSLLALNSFAQDPQGLR 759
SATWLI+ML LPDTGI GAARV LLK FIS FKSA +++ALS+LAL+SF DP+GL
Sbjct: 760 SATWLIHMLTVLPDTGIRGAARVCLLKHFISMFKSAKGTEEKALSMLALSSFIHDPEGLN 819
Query: 760 DINIHMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSI 819
D+ HMKDI+KGLR+L+K LA +M+KV S G++SS D WNH+ELV VD S NG+VLSI
Sbjct: 820 DLTSHMKDILKGLRQLKKSCILAVDMLKVFSEGNNSSIDLWNHKELVQVDCSANGEVLSI 879
Query: 820 ACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTA 879
CFRDKIFSGHSDGTIKVWTGRGSILHLI + REHTKAVT LAIL+SGE LYSGSLD+TA
Sbjct: 880 VCFRDKIFSGHSDGTIKVWTGRGSILHLIHETREHTKAVTSLAILESGERLYSGSLDRTA 939
Query: 880 RVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPK 939
R+WSIG+E I+CVQ+HD+KDQ+ NL V+NSI CFIPQGAG+KVH NGK+KLLN +K K
Sbjct: 940 RIWSIGSEAIYCVQIHDMKDQVNNLVVANSIACFIPQGAGVKVHSWNGKSKLLNPNKNVK 999
Query: 940 CLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAST 999
CL LV GK+YCGC D +IQEIDLATGT ++IQ+G RKLLGK+NPVHALQVH+G++Y++S
Sbjct: 1000 CLTLVHGKLYCGCHDNSIQEIDLATGTLSSIQSGTRKLLGKSNPVHALQVHDGMIYSSSF 1059
Query: 1000 SLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETL 1059
SLDGAAVK+WS +NY+MVGSL + EVR + VSSEL+YLG K GTVEIW +K+ IR+ETL
Sbjct: 1060 SLDGAAVKIWSATNYSMVGSLASTMEVRTLAVSSELIYLGSKSGTVEIWCRKKLIRVETL 1119
Query: 1060 QTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094
QTGT+GKVQCMA+D +EE LV+GTSDGRIQAW LS
Sbjct: 1120 QTGTNGKVQCMAVDGDEEVLVVGTSDGRIQAWELS 1154
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356511369|ref|XP_003524399.1| PREDICTED: uncharacterized protein LOC100787950 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1278 bits (3307), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 628/992 (63%), Positives = 778/992 (78%), Gaps = 22/992 (2%)
Query: 124 RQIRKQKQPIFVE---------------SSCSPDHLIMADADNP-PGIGKHTPPKDFVCP 167
+++R+ +P FV +CS MAD D P GIGKH PKDFVCP
Sbjct: 400 KRVRQYLRPFFVMLFHGVLHSFSLTWILPTCSSPDYPMADLDTPLHGIGKHAHPKDFVCP 459
Query: 168 ITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASW 227
IT++IFDDPVTLETGQTYER+AI+EW RGN +CPITRQKL +T+LPKTNYVLKRLIASW
Sbjct: 460 ITSYIFDDPVTLETGQTYERKAIEEWFNRGNLTCPITRQKLQNTQLPKTNYVLKRLIASW 519
Query: 228 QEQNPGGLDLSHSEPMS------KSIVPSNSPNSVISQATIDGTITELKHAITSLCMSEI 281
+++NP + S+ P K +PS SPNSVI+QAT+DG ++EL+ AI +L MSE+
Sbjct: 520 KDRNPHLVPPSYEIPYEETEEAVKLTIPSTSPNSVITQATVDGMMSELRCAINNLYMSEV 579
Query: 282 LNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSEL 341
L ESEMAVLQIE+ W ++ +DI MLSKPA+INGF+EILFNSV+P+VL+A++FLL+E+
Sbjct: 580 LQESEMAVLQIEKFWRGVNVGVDIHSMLSKPAIINGFMEILFNSVEPQVLQASVFLLAEM 639
Query: 342 GSRDKSVIHTLTRVESDVERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIK 401
GSRD +VI TLTRV+SDVE I+ALFK GL EAVVL+ LL PST L EM ++ESL+TV
Sbjct: 640 GSRDNAVIKTLTRVDSDVECIMALFKNGLTEAVVLLYLLNPSTVNLAEMAIVESLITVFN 699
Query: 402 KKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEE 461
KKEED +KMCLKPK+ +VLLL ++IG SEE I SS+ NT+ S K +++ SL A A+E
Sbjct: 700 KKEEDLVKMCLKPKTAAVLLLARIIGGSEEIISSSVVNTLFSEKAIGTIVGSLGANLAKE 759
Query: 462 RIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRT 521
RIAAV ILLRCM+EDG RN+IADKAEL P++E+ + A+DG+RF+I+ F SELVKLNRRT
Sbjct: 760 RIAAVEILLRCMEEDGTSRNNIADKAELTPLLETLIGATDGDRFKIIQFFSELVKLNRRT 819
Query: 522 FNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAI 581
FNEQILHIIK+EG +S+MHTLL+YLQTA DQCPV+AGLLLQLDLL EPRKMSIYREEA+
Sbjct: 820 FNEQILHIIKEEGPFSTMHTLLIYLQTALQDQCPVMAGLLLQLDLLVEPRKMSIYREEAM 879
Query: 582 DTLISCLRNSDYPAAQLAAAKTIVSLQGRFTTSGKSLTRAMLLKRAGVGKSYKNLTRTEQ 641
DTLISCLRN+D+P QLAAA T++SLQG F SG LTR +LLKRAG+ KS ++L + Q
Sbjct: 880 DTLISCLRNADFPVTQLAAADTVISLQGSFDFSGNPLTREVLLKRAGIEKSSRSLVQVNQ 939
Query: 642 IGNICGEDDDTSEEEKAADDWERKMALVLVSHDFGLLFEALEEGLNSRFAELYSACFESA 701
I N E D T EEEKAADDWER++A VLVSH+FG LFEAL +G+ SR EL SACF SA
Sbjct: 940 ISNFSPEIDITPEEEKAADDWERRIASVLVSHEFGTLFEALADGMKSRNPELRSACFISA 999
Query: 702 TWLIYMLNFLPDTGIFGAARVSLLKRFISAFKSANDIDDRALSLLALNSFAQDPQGLRDI 761
TWLIYML LPDTGI AAR LLK+FI+ S D++DR LS+LALNSF GL D+
Sbjct: 1000 TWLIYMLTILPDTGIQVAARACLLKQFIAKLNSTKDVEDRILSMLALNSFLHFSDGLGDL 1059
Query: 762 NIHMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIAC 821
+ KDI+KGLREL++ PLA +M+KVL ++S AD W H +L+ D SENG+VLS+ C
Sbjct: 1060 TSYTKDIIKGLRELKRSCPLATKMLKVLVEENESKADIWIHTQLIKEDCSENGEVLSVIC 1119
Query: 822 FRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 881
F+DK FSGH+DGTIKVWT + ++ +L+Q+I+EHTKAVT L IL+S + LYSGSLD+TA+V
Sbjct: 1120 FKDKFFSGHTDGTIKVWTLKDNLFYLLQEIQEHTKAVTNLVILESDDRLYSGSLDRTAKV 1179
Query: 882 WSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCL 941
WSIG IHCVQVHD+KDQI NL V+NS+ CFIPQG G+KV NG++KLLNSSKY KCL
Sbjct: 1180 WSIGKAAIHCVQVHDMKDQIHNLVVTNSLACFIPQGTGVKVQSLNGESKLLNSSKYVKCL 1239
Query: 942 ALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSL 1001
A V GK+YCGC D ++QEI LATGT TIQ+G+++LLGKANP+HALQ+H LVY A ++L
Sbjct: 1240 AHVHGKLYCGCHDSSVQEIHLATGTVNTIQSGYKRLLGKANPIHALQIHGELVYAAGSNL 1299
Query: 1002 DGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQT 1061
DG+A+K+W+ SNY+MVGSL T S+VRAM VSSEL+YLGCKGGT+EIWD+K+ R++TLQ
Sbjct: 1300 DGSAIKIWNNSNYSMVGSLQTGSDVRAMAVSSELIYLGCKGGTLEIWDKKKHNRVDTLQM 1359
Query: 1062 GTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093
GT+ +V CMALD N E LVIGTSDG+IQ L
Sbjct: 1360 GTNCRVNCMALDGNGEVLVIGTSDGQIQLLNL 1391
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356527773|ref|XP_003532482.1| PREDICTED: uncharacterized protein LOC100808867 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1264 bits (3271), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 617/965 (63%), Positives = 766/965 (79%), Gaps = 9/965 (0%)
Query: 134 FVESSCSPDHLIMADADNP-PGIGKHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQE 192
+V +CS MAD D P GIGKH PPKDFVCPIT+HIFDDPVTLETGQTYER+AI+E
Sbjct: 391 WVVPTCSSPDYPMADFDTPLHGIGKHAPPKDFVCPITSHIFDDPVTLETGQTYERKAIEE 450
Query: 193 WIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGGLDLSHSEPMS-------- 244
W RGN +CPITRQKL +T+LPKTNYVLKRLIASW+++NP + P
Sbjct: 451 WFNRGNITCPITRQKLQNTQLPKTNYVLKRLIASWKDRNPHLVPPPCESPYEDTDEAVVI 510
Query: 245 KSIVPSNSPNSVISQATIDGTITELKHAITSLCMSEILNESEMAVLQIERCWLEASMELD 304
+ +PS SPNSVI+QAT+DG ++EL+ AI +L MSE+L ESEMAVLQI++ W ++ +D
Sbjct: 511 PTTLPSTSPNSVITQATVDGMMSELRCAINNLYMSEVLQESEMAVLQIDKFWRGVNVGVD 570
Query: 305 IQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVA 364
I MLSKPA+INGF+EILFNSV+P+VL+A++FLL+E+GSRD +VI TLTRV++DVE I A
Sbjct: 571 IHSMLSKPAIINGFMEILFNSVEPQVLQASVFLLAEMGSRDNAVIKTLTRVDTDVECIKA 630
Query: 365 LFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQ 424
LFK GL EAVVL+ LL PST +L EM ++ESL+TV KKEED +KMCLKPK+ +VLLL +
Sbjct: 631 LFKNGLTEAVVLLYLLNPSTMSLAEMAIVESLITVFNKKEEDLVKMCLKPKTAAVLLLAR 690
Query: 425 MIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIA 484
++G SEE I SS+ NT+ S K +++ SL A+ A+ERIAAV ILLRCM+EDG CRN+IA
Sbjct: 691 IVGSSEEIIASSVVNTLFSEKTIGTIVGSLGADLAKERIAAVEILLRCMEEDGTCRNNIA 750
Query: 485 DKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLV 544
DKAEL+P++E+ + A+DG+RF+I+ F ELVKLNRRTF EQILHIIK+EG +S+MHTLL+
Sbjct: 751 DKAELSPILETLIGATDGDRFKIIQFFFELVKLNRRTFIEQILHIIKEEGPFSTMHTLLI 810
Query: 545 YLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTI 604
YLQTA DQCPV+AGLLLQLDLL EPRKMSIYREEA+DTLISCLRN+D+P QLAAA TI
Sbjct: 811 YLQTALQDQCPVMAGLLLQLDLLVEPRKMSIYREEAMDTLISCLRNTDFPVTQLAAADTI 870
Query: 605 VSLQGRFTTSGKSLTRAMLLKRAGVGKSYKNLTRTEQIGNICGEDDDTSEEEKAADDWER 664
+SLQG F SG TR +LLKRAG+ KS ++L + +QI N E D T EEEKAADDWER
Sbjct: 871 ISLQGSFDFSGNPRTREVLLKRAGIEKSSRSLVQVDQINNFSPEIDITPEEEKAADDWER 930
Query: 665 KMALVLVSHDFGLLFEALEEGLNSRFAELYSACFESATWLIYMLNFLPDTGIFGAARVSL 724
++A VLVSH+FG LFEAL +G+ SR EL SACF ATWLIYML LPDTGI AAR L
Sbjct: 931 RIASVLVSHEFGTLFEALADGMKSRNPELRSACFILATWLIYMLTILPDTGIHVAARACL 990
Query: 725 LKRFISAFKSANDIDDRALSLLALNSFAQDPQGLRDINIHMKDIMKGLRELRKYSPLAFE 784
LK+FI+ A D++DR LS+LALNSF G D+ KDI+KGLREL++ PLA +
Sbjct: 991 LKQFIAKLNCAKDVEDRILSMLALNSFLHFSDGFGDLTSFTKDIIKGLRELKRSCPLATK 1050
Query: 785 MVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSI 844
M+KVL ++S A+ W H+EL+ D SENG+VLS+ CF+ K FSGH+DGT+KVWT + ++
Sbjct: 1051 MLKVLVEENESKAEIWIHKELIKEDCSENGEVLSVICFKGKFFSGHTDGTMKVWTLKDNL 1110
Query: 845 LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNL 904
L+Q+I+EHTKAVT L I +S + LYSGSLD+TARVWSIG IHCVQVHD+KDQI NL
Sbjct: 1111 FCLMQEIQEHTKAVTNLVISESDDRLYSGSLDRTARVWSIGKAAIHCVQVHDMKDQIHNL 1170
Query: 905 AVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT 964
V+NS+ CFIPQG G+KV NG++KLLNSSKY KCLA V GK+YCGC D ++QEI LAT
Sbjct: 1171 VVTNSLSCFIPQGTGVKVQSLNGESKLLNSSKYVKCLAHVHGKLYCGCHDSSVQEIHLAT 1230
Query: 965 GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLS 1024
GT TIQ+G+++LLGKANP+HALQ+H L+Y A +SLDG+A+K+W+ SNY++VGSL T S
Sbjct: 1231 GTVNTIQSGYKRLLGKANPIHALQIHGELIYAAGSSLDGSAIKIWNNSNYSIVGSLQTGS 1290
Query: 1025 EVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTS 1084
+VRAM VSSEL+YLGCKGGTVEIWD+K+ R++TLQ GT+ +V CMALD NEE LVIGTS
Sbjct: 1291 DVRAMEVSSELIYLGCKGGTVEIWDKKKHKRVDTLQMGTNCRVNCMALDSNEEVLVIGTS 1350
Query: 1085 DGRIQ 1089
DG+IQ
Sbjct: 1351 DGQIQ 1355
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357520957|ref|XP_003630767.1| U-box domain-containing protein [Medicago truncatula] gi|355524789|gb|AET05243.1| U-box domain-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1241 bits (3210), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 624/987 (63%), Positives = 767/987 (77%), Gaps = 24/987 (2%)
Query: 84 EIESSLDKHLNNSSYSSSDSDAEATDEQKNIRMASLEPRQRQI--RKQKQPIFVESSCSP 141
E + SLD++L SS SD+EA +E+K+ +A LEPRQ Q ++Q Q IF ES SP
Sbjct: 76 ETQFSLDENLLCSS-----SDSEAENEEKDKNVALLEPRQSQSQNKEQIQTIFKESRGSP 130
Query: 142 DHLIMADADNPP--GIGKHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNS 199
D+ MAD +N P G GK TPPKDFVCPIT++IFDDPVTLETGQTYER+AI+EW R N
Sbjct: 131 DY-PMADYENTPPHGSGKQTPPKDFVCPITSNIFDDPVTLETGQTYERKAIEEWFNRENI 189
Query: 200 SCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGGLD------LSHSEPMSKSIVPSNSP 253
+CPITRQKL +TKLPKTNYVLKRL+ASW+E NP + SE + K+ +PS SP
Sbjct: 190 TCPITRQKLQNTKLPKTNYVLKRLVASWKEHNPSSVPPTCECPYKDSESVVKTEIPSTSP 249
Query: 254 NSVISQATIDGTITELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPA 313
NSVI+QAT+DG I EL+ AI +L MSEIL ESEMA LQIE+ W ++ +DI MLSKP
Sbjct: 250 NSVITQATVDGMIGELRCAINNLYMSEILQESEMAALQIEKLWRGGNLGVDIHSMLSKPP 309
Query: 314 VINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGLLEA 373
+INGFVEILFNSV+P+VL+A +FLL+E+GSRD SVI TLTRV++DVE I+ALFKKGL EA
Sbjct: 310 IINGFVEILFNSVEPQVLQAAVFLLAEMGSRDNSVIQTLTRVDTDVECIMALFKKGLTEA 369
Query: 374 VVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESI 433
VVL+ +L PST TL EM ++ESL+ V KKEED + MCL PK+ +VLLLGQ+IG S+E I
Sbjct: 370 VVLLYVLNPSTVTLTEMAVVESLIAVFNKKEEDLVNMCLNPKTAAVLLLGQIIGSSDEII 429
Query: 434 VSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVM 493
SSI T+ S K +++ SL AEWAEERI AV ILLRCMQEDG CRN+IADKAEL+ +M
Sbjct: 430 ASSIVKTLFSEKALGAIVGSLGAEWAEERIVAVEILLRCMQEDGTCRNTIADKAELSSIM 489
Query: 494 ESFMAASDGERFEIVCFLSELVKLN-------RRTFNEQILHIIKDEGTYSSMHTLLVYL 546
ESF+ A+D ERF+IV F SEL+KLN RRTFNE+ILHIIK+EG +S+MHTLL++L
Sbjct: 490 ESFIHANDAERFKIVEFFSELIKLNSFQLVPSRRTFNERILHIIKEEGPFSTMHTLLIHL 549
Query: 547 QTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVS 606
QTA DQCPV+AGLLLQLDLL EPR MSIYREEAID+LISCLRNSD+P QLAAA TI+S
Sbjct: 550 QTALQDQCPVMAGLLLQLDLLVEPRNMSIYREEAIDSLISCLRNSDFPTTQLAAADTIMS 609
Query: 607 LQGRFTTSGKSLTRAMLLKRAGVGKSYKNLTRTEQIGNICGEDDDTSEEEKAADDWERKM 666
LQGRF+ SGK L R +LLKRAG+ K ++ + + + N E + T+EEE+AADDWERK+
Sbjct: 610 LQGRFSFSGKPLIREVLLKRAGIDKGPRSDVQVDHMSNFFSEIEITAEEERAADDWERKI 669
Query: 667 ALVLVSHDFGLLFEALEEGLNSRFAELYSACFESATWLIYMLNFLPDTGIFGAARVSLLK 726
A VLVSH+FG+LFEAL +G+ SR EL SACF SATWLIYML LPDTGI GAARV LLK
Sbjct: 670 ASVLVSHEFGILFEALADGMKSRIPELRSACFISATWLIYMLTTLPDTGIQGAARVCLLK 729
Query: 727 RFISAFKSANDIDDRALSLLALNSFAQDPQGLRDINI-HMKDIMKGLRELRKYSPLAFEM 785
F++ SA DI+ R LS+LALNSF GLRD+ + KDI+KGLREL+++SPLA EM
Sbjct: 730 PFVNKLNSAKDIEHRILSMLALNSFLHFSDGLRDLTASYAKDILKGLRELKRFSPLASEM 789
Query: 786 VKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSIL 845
+KVL + ++ D W H+E++ VD NG VLS+ CF+DKI SGH+DG+IKVWT + + L
Sbjct: 790 LKVLVDENEPKTDIWRHKEIIQVDCRGNGDVLSVICFKDKIISGHTDGSIKVWTLKDNEL 849
Query: 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLA 905
L+Q+I+EHTKAVT L I + G+ LYSGSLD+TA++WSIG IHC QVHD+KDQI NL
Sbjct: 850 LLLQEIQEHTKAVTNLTISEPGDRLYSGSLDRTAKIWSIGKAAIHCEQVHDMKDQIHNLV 909
Query: 906 VSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATG 965
V+NS CFIPQGAG+KV NG++KLLNS+KY KCLA G++YCGC D ++QEI LATG
Sbjct: 910 VTNSTTCFIPQGAGVKVQSMNGESKLLNSNKYVKCLAHAHGRLYCGCHDSSVQEIHLATG 969
Query: 966 TFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSE 1025
T + IQ+G ++LLGKA P+HALQVH L+Y A +SLDG A+K+W+ SNY+MVGSL T SE
Sbjct: 970 TISNIQSGSKRLLGKAYPIHALQVHGELIYAAGSSLDGTAIKIWNNSNYSMVGSLQTGSE 1029
Query: 1026 VRAMVVSSELVYLGCKGGTVEIWDQKR 1052
VRAM VSSEL+YLGCKGG VEIWD+K
Sbjct: 1030 VRAMAVSSELIYLGCKGGVVEIWDKKH 1056
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449449627|ref|XP_004142566.1| PREDICTED: putative E3 ubiquitin-protein ligase LIN-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1174 bits (3038), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 604/1037 (58%), Positives = 774/1037 (74%), Gaps = 29/1037 (2%)
Query: 77 GGLHFDSEIESSLDKHLNNSSYSSSDSDAEATDEQKNIR----MASLEPRQRQIRKQKQP 132
G L+F+ E ESS + ++S +S A+A D+ I +L + +K KQ
Sbjct: 309 GPLNFNGEQESSS----GSKTFSIFNSAAQAQDDSSKIEENDGKTALFDSILETQKLKQT 364
Query: 133 I--FVESSCSPDHL--IMADADNP-PGIGK--HTPPKDFVCPITTHIFDDPVTLETGQTY 185
I ES L M D+ N P G+ +TP KDFVCPIT +IF DPVTLETGQTY
Sbjct: 365 ITSMEESGTKSAELDFAMEDSGNASPESGERYNTPSKDFVCPITCNIFYDPVTLETGQTY 424
Query: 186 ERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGGLDLSHSEPMSK 245
ER AIQEW+ERGNS+CPIT QKL +T+LPKTNYVLKRLIASW E+NP + + +P+ +
Sbjct: 425 ERSAIQEWLERGNSTCPITGQKLENTQLPKTNYVLKRLIASWLEENP---NFALDKPIDE 481
Query: 246 S--IVPSNSPNSVISQATIDGTITELKHAITSLCMSEILNESEMAVLQIERCWLEASMEL 303
+ +V SP SVISQA+ID + E++ AI +L SE+L E+E AVL +ER WLE ++E+
Sbjct: 482 ADPLVVLTSPVSVISQASIDRGMKEVRRAIVNLYASEVLEEAEAAVLCVERFWLEENVEM 541
Query: 304 DIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIV 363
DIQ+ML KP VING VEIL NSV+ +VL A IFLLSELG +D +VI TL+RVESDV+ IV
Sbjct: 542 DIQLMLLKPPVINGLVEILVNSVNEQVLSAAIFLLSELGFKDAAVIQTLSRVESDVDCIV 601
Query: 364 ALFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLG 423
LFK G +EAVVLI L S+++L EMDM+ SL+ IKK E D KM L KS +V+LL
Sbjct: 602 TLFKGGFMEAVVLIYQLGLSSQSLQEMDMVGSLLNAIKKNERDVNKMRLSHKSAAVILLR 661
Query: 424 QMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSI 483
+++G S+E S IA +++ E +I SL+A+ EERI+AVGILLRC+QEDG+CRN I
Sbjct: 662 KILGKSKEG--SLIAVVVLAENAIECIIGSLKAKQVEERISAVGILLRCIQEDGRCRNII 719
Query: 484 ADKAELAPVMESFMAASDGERFEIVCFLSELVKLNR-------RTFNEQILHIIKDEGTY 536
AD A+LA V+ESF+ S+ E+FEI+ FLSELVKLNR RTFNEQIL IKD G Y
Sbjct: 720 ADTADLALVLESFIEVSNHEQFEIITFLSELVKLNRYVLLVTRRTFNEQILQNIKDGGEY 779
Query: 537 SSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAA 596
S+MH+LL+YLQTA DQ PVVAGLLLQLD+L EPRKMSIYREEA+D LISCL +SD+P+
Sbjct: 780 STMHSLLIYLQTARRDQSPVVAGLLLQLDVLVEPRKMSIYREEAMDILISCLGDSDFPST 839
Query: 597 QLAAAKTIVSLQGRFTTSGKSLTRAMLLKRAGVGKSYKNLTRTEQIGNICGEDDDTSEEE 656
Q++AA+TI+SLQGRF+TSG+ LTR LL+RAG K ++ + + I + GE + T EEE
Sbjct: 840 QISAAETIMSLQGRFSTSGRPLTRYFLLERAGFTKGHRKSIQRDTIRSAPGEVELTREEE 899
Query: 657 KAADDWERKMALVLVSHDFGLLFEALEEGLNSRFAELYSACFESATWLIYMLNFLPDTGI 716
+AAD+WERKMA VL+SHDFGLLFE L +GLNS+FA L+SACF SATWL +ML LPDTGI
Sbjct: 900 RAADEWERKMAFVLISHDFGLLFEPLAKGLNSKFAALFSACFVSATWLSHMLRSLPDTGI 959
Query: 717 FGAARVSLLKRFISAFKSANDIDDRALSLLALNSFAQDPQGLRDINIHMKDIMKGLRELR 776
ARV LL F+S F + D++++ L LLA+NSF +P GL+ ++ +MKDIM+GLREL+
Sbjct: 960 LETARVCLLDHFLSIFTTTTDVEEKTLGLLAINSFVHEPDGLQCLSSNMKDIMRGLRELK 1019
Query: 777 KYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIK 836
+ +PLAFEM+KVL D +++FW H+EL VD S NG+VLSIA F+DKI SGHSDG IK
Sbjct: 1020 RSTPLAFEMLKVLCEEQDLTSEFWCHQELFQVDCSTNGEVLSIAYFKDKIISGHSDGRIK 1079
Query: 837 VWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHD 896
VW RG+ LHLI +++EH+K VT L +L+ E LYSGSLDKT +VWS+G++ I C+Q+HD
Sbjct: 1080 VWAVRGTNLHLIHEVQEHSKGVTSLVVLEFEEKLYSGSLDKTIKVWSLGSDTIQCIQLHD 1139
Query: 897 IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGA 956
+KDQI NL VS ++ CFIP GAGI+V+ G++KLLNSSK+ KCL LV GK++CGC D +
Sbjct: 1140 VKDQIHNLVVSKTVACFIPHGAGIRVYSWGGESKLLNSSKHVKCLNLVGGKLFCGCHDSS 1199
Query: 957 IQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNM 1016
IQE+DLATGT + I +G RKLLGKANP+ ALQV++ +++AST+LDGAAVK+WSTSNY M
Sbjct: 1200 IQEVDLATGTLSYIHSGSRKLLGKANPIQALQVYDEQLFSASTALDGAAVKIWSTSNYGM 1259
Query: 1017 VGSLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNE 1076
+GSL T +VR+M VSS+L YLG KGG VEIW +++ +I+TLQ G + K+ CMALD+ E
Sbjct: 1260 IGSLTTSLDVRSMAVSSDLTYLGGKGGMVEIWSREKHNKIDTLQMGRNCKIVCMALDERE 1319
Query: 1077 EFLVIGTSDGRIQAWGL 1093
E LVIGTSDGRIQ WGL
Sbjct: 1320 EVLVIGTSDGRIQGWGL 1336
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326507154|dbj|BAJ95654.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 1031 bits (2665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/972 (53%), Positives = 704/972 (72%), Gaps = 37/972 (3%)
Query: 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNY 218
T PKDFVCPIT+ +FDDPVTLETGQTYERRAIQEW++RGN++CPITRQ L LPKTNY
Sbjct: 405 TTPKDFVCPITSQVFDDPVTLETGQTYERRAIQEWLDRGNATCPITRQHLHGGSLPKTNY 464
Query: 219 VLKRLIASWQEQN-------------------PGGLDLSHSEPMSKSIVPS--------- 250
VLKRLIA W+EQ+ P + P K PS
Sbjct: 465 VLKRLIAGWREQSPPATPITPATPPTPAVPRTPAPARMESPAPAFKINSPSPDTTGSQAS 524
Query: 251 -NSPNSVISQATIDGTITELKHAITSLCMSEILNESEMAVLQIERCWLEA-SMELDIQIM 308
SP SVI QAT++ ++EL+ A++ LC SE L ESE +VL+IER W EA + E
Sbjct: 525 APSPTSVIVQATVESAVSELRAAVSCLCTSEELAESEKSVLRIERLWREAGAAEQAFFSA 584
Query: 309 LSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKK 368
L+KPAVINGFVEILFNSV +VL+ +FLL+EL SRD V+ TLTRV++DV+ +VALFKK
Sbjct: 585 LAKPAVINGFVEILFNSVSAQVLQVAVFLLAELASRDDGVVQTLTRVDTDVDCLVALFKK 644
Query: 369 GLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEE-DFLKMCLKPKSVSVLLLGQMIG 427
GL+EAVVLI LL PS L+EMDM E+L+ I++ +E D L MC+KPKS SV+LL Q++
Sbjct: 645 GLVEAVVLIFLLSPSVEQLVEMDMGEALVATIRRADEADALNMCVKPKSASVILLSQILS 704
Query: 428 DS---EESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIA 484
+S ES + +VS + S LEAE E R+AA+ IL+RC+ EDG CR+SI
Sbjct: 705 ESGVGRESTPPVPRSALVSERFVRSTALVLEAEQVEVRVAAMRILMRCVGEDGHCRSSIV 764
Query: 485 DKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLV 544
+K + V+++F D ++FEIV FLSEL+KL +R+ E++L IK+ ++S MHTLLV
Sbjct: 765 EKLAVGAVLDAFHVVGDADKFEIVRFLSELLKLRKRSAAERVLRAIKEGSSFSMMHTLLV 824
Query: 545 YLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTI 604
YLQ+ +Q PVVAGLLLQLDLL EPRK+S+YREEA+D+L+ CL+NSD+P +QL AA+TI
Sbjct: 825 YLQSTTPEQTPVVAGLLLQLDLLVEPRKISMYREEAMDSLVQCLKNSDFPRSQLLAAETI 884
Query: 605 VSLQGRFTTSGKSLTRAMLLKRAGVGKSYKNLTRTEQIGNICGEDDDTSEEEKAADDWER 664
++L G+F++SG+ L R+ LLK A V + Y++ + G +DD + EEKAA +WER
Sbjct: 885 MNLPGKFSSSGRPLARSTLLKLARVKERYRHSQELSVVRGTDGAEDDAAGEEKAASEWER 944
Query: 665 KMALVLVSHDFGLLFEALEEGLNSRFAELYSACFESATWLIYMLNFLPDTGIFGAARVSL 724
K A LVSH+FGL+ EAL E L S+ AEL++A A WL++ML+ LPDTG+ GAARV L
Sbjct: 945 KTAYALVSHEFGLVLEALSECLESKNAELFAASLVCAAWLVHMLSLLPDTGVLGAARVCL 1004
Query: 725 LKRFISAFKSANDIDDRALSLLALNSFAQDPQGLRDINIHMKDIMKGLRELRKYSPLAFE 784
L++ + +SA DRAL+++AL SF D +G++DI ++KD+++ LREL+K S LAFE
Sbjct: 1005 LRQLVLVLRSAKHGSDRALAMVALRSFMNDREGMQDITTYIKDVLRTLRELKKSSGLAFE 1064
Query: 785 MVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSI 844
M+K+LS+G +SS D WNH+EL + D S NG+V SI ++ IFSGHSDGT+KVW G +I
Sbjct: 1065 MLKLLSDGQESSIDMWNHKELNNADCSSNGEVTSIVYYKSYIFSGHSDGTLKVWEGSENI 1124
Query: 845 LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNL 904
L L+Q+ +EHTKA+T L+IL S E LYSGS+D+T RVW + + C +V+D +D +QNL
Sbjct: 1125 LRLVQESQEHTKAITSLSILPSEEKLYSGSMDRTIRVWQF-RDGLRCAEVYDTRDPVQNL 1183
Query: 905 AVSNSILCFIPQGAGIKVHLRNGKT-KLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA 963
AV++++ CF+PQGAG+K NG T K+LN SK + +ALV GK++CGC DG+IQEIDLA
Sbjct: 1184 AVASAMACFVPQGAGVKTLSWNGGTPKVLNPSKSVRSMALVHGKLFCGCNDGSIQEIDLA 1243
Query: 964 TGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTL 1023
+GT IQ G++++LGK+NPV++LQVH GL+YT ST LDGA+VK+W++SNYN VGS+P+
Sbjct: 1244 SGTLGVIQPGNKRILGKSNPVYSLQVHEGLLYTGSTPLDGASVKIWNSSNYNQVGSIPSA 1303
Query: 1024 SEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSG-KVQCMALDDNEEFLVIG 1082
+EVR++VVS++LVYLG + G VEIW +++ I+I LQ G +G +VQCMA+D + + LV+G
Sbjct: 1304 AEVRSLVVSADLVYLGSRNGAVEIWSREKLIKIGALQAGGAGCRVQCMAVDADGDVLVVG 1363
Query: 1083 TSDGRIQAWGLS 1094
TSDG+IQAWGL+
Sbjct: 1364 TSDGKIQAWGLT 1375
|
Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357127715|ref|XP_003565524.1| PREDICTED: uncharacterized protein LOC100836629 [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 1017 bits (2629), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 516/997 (51%), Positives = 702/997 (70%), Gaps = 67/997 (6%)
Query: 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVL 220
PKDFVCPIT+ +FDDPVTLETGQTYERRAIQEW++RGN++CPITRQ+L LPKTNYVL
Sbjct: 426 PKDFVCPITSQVFDDPVTLETGQTYERRAIQEWLDRGNATCPITRQRLLGGALPKTNYVL 485
Query: 221 KRLIASWQEQ-------NPG---------------GLDLSHSEPMSK------------S 246
KRLIA W++Q P G H P S S
Sbjct: 486 KRLIAGWRDQITSSSPPQPATPRPSRPVTRMESAQGPAQDHPAPASPVKINSPSPDATGS 545
Query: 247 IVPSNSPNSVISQATIDGTITELKHAITSLCMSEILNESEMAVLQIERCW-LEASM---- 301
+ SP SVI QA+++ + EL+ A++ LC SE L ESE +VL+I+R W E++M
Sbjct: 546 QASAPSPTSVIVQASVESAVGELRAAVSCLCTSEDLAESEKSVLKIDRLWRRESAMGAGA 605
Query: 302 ----ELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVES 357
+ +L+KPAVINGFVEILFNSV +VL+ +FLL+EL SRD V+ TLTRV++
Sbjct: 606 AEQKQHAFFSVLAKPAVINGFVEILFNSVSAQVLQVAVFLLAELASRDDGVVQTLTRVDA 665
Query: 358 DVERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSV 417
DV+ +VALFKKGLLEAVVLI LL PS L+EMDM ++L++ +++ +ED L MC+KPK+
Sbjct: 666 DVDCLVALFKKGLLEAVVLIYLLSPSVEQLVEMDMADALVSAVRRGDEDPLDMCVKPKAA 725
Query: 418 SVLLLGQMIG-------DSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILL 470
SV+LL Q++ DS + + S +VS + S + LEAE E R+AA+ ILL
Sbjct: 726 SVILLSQILSEEAAGDRDSSQPVPRS---ALVSERFVRSTVMVLEAEQVEVRVAAMRILL 782
Query: 471 RCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHII 530
RC+ EDG CR SI +K L V+++F D ++F+IV FLSELVKL RR+ E++L I
Sbjct: 783 RCVAEDGHCRGSIVEKLSLGAVLDAFHVVGDADKFDIVRFLSELVKLKRRSAAERVLRAI 842
Query: 531 KDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRN 590
K+ G++S MHTLLVYLQ+ +Q PVVAGLLLQLDLL EPRK+S+YREEA+D+L+ CLRN
Sbjct: 843 KEGGSFSMMHTLLVYLQSTTPEQSPVVAGLLLQLDLLVEPRKISMYREEAVDSLVQCLRN 902
Query: 591 SDYPAAQLAAAKTIVSLQGRFTTSGKSLTRAMLLKRAGVGKSYK-----------NLTRT 639
SD+P +QL AA+TI++L G+F++SG+ L R+ LLK A V + Y+ ++ R
Sbjct: 903 SDFPRSQLLAAETIMNLPGKFSSSGRPLARSSLLKLARVKERYRQPQSQSQSQELSVVRG 962
Query: 640 EQIGNICGEDD-DTSEEEKAADDWERKMALVLVSHDFGLLFEALEEGLNSRFAELYSACF 698
+ GED+ + E+K A +WERK A LV H+FGL+FEAL E L S+ AEL+ A
Sbjct: 963 TDGVGVGGEDEVVVAGEDKGASEWERKTAYALVGHEFGLVFEALSECLESKSAELFGASL 1022
Query: 699 ESATWLIYMLNFLPDTGIFGAARVSLLKRFISAFKSANDIDDRALSLLALNSFAQDPQGL 758
A WL +ML LPDTG+ GAAR LL++ + +SA DRAL+++AL SF D G+
Sbjct: 1023 VCAAWLAHMLPVLPDTGVVGAARACLLRQLVIVLRSAKHGSDRALAMVALRSFMNDRDGM 1082
Query: 759 RDINIHMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLS 818
+DI ++KD++K LREL+K S LAF+M+K+LS+G +SS D WNH+EL H D S NG+V S
Sbjct: 1083 QDIATYIKDVLKTLRELKKSSGLAFDMLKLLSDGQESSIDMWNHKELNHADCSSNGEVTS 1142
Query: 819 IACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKT 878
I F+ IFSGHSDGT+KVW G +IL L+ + +EHTKA++ L++L S E LYSGSLD+T
Sbjct: 1143 IVYFKSYIFSGHSDGTLKVWEGSENILRLVHESQEHTKAISSLSLLHSEEKLYSGSLDRT 1202
Query: 879 ARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYP 938
RVW + + CV+VHD +D +Q LAV+ ++ CF+PQG G+K +G +K+LN SK
Sbjct: 1203 IRVWQF-RDGLRCVEVHDTRDPVQGLAVAGAMACFVPQGGGVKALSWSGGSKVLNPSKSV 1261
Query: 939 KCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAS 998
+ +ALV GK++CGC DG+IQEIDLA+GT IQTG++++LGKANPV+++QVH+GL+Y S
Sbjct: 1262 RSMALVHGKLFCGCSDGSIQEIDLASGTLGVIQTGNKRILGKANPVYSMQVHDGLLYAGS 1321
Query: 999 TSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIET 1058
T LDGA+VK+W++SNY++VGS+P+ +E R++VVS++LVYLG + G VEIW +++ I+I T
Sbjct: 1322 TPLDGASVKIWNSSNYSLVGSIPSPAEARSLVVSADLVYLGSRNGAVEIWSREKLIKIGT 1381
Query: 1059 LQTGTSG-KVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094
LQ G +G +VQCMA+D + + LV+GTSDGRIQAWGL+
Sbjct: 1382 LQAGGTGCRVQCMAVDADGDVLVVGTSDGRIQAWGLT 1418
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242051493|ref|XP_002454892.1| hypothetical protein SORBIDRAFT_03g000870 [Sorghum bicolor] gi|241926867|gb|EES00012.1| hypothetical protein SORBIDRAFT_03g000870 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 999 bits (2582), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/1003 (50%), Positives = 706/1003 (70%), Gaps = 64/1003 (6%)
Query: 150 DNPPGIGKHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLS 209
D P G PKDFVCPIT+ +FDDPVTLETGQTYERRAIQEW++RGNS+CPITRQ+L
Sbjct: 408 DTP---GPLPTPKDFVCPITSQVFDDPVTLETGQTYERRAIQEWLDRGNSTCPITRQRLH 464
Query: 210 STKLPKTNYVLKRLIASWQEQ----------------------------------NPGGL 235
+LPKTNYVLKRLI +W +Q P
Sbjct: 465 GAQLPKTNYVLKRLIGAWWDQQPQPQRRSSPSPSPSPPPATPPPATIAMAGDSPATPPPF 524
Query: 236 DL-------SHSEPMSKSIVPSNSPNSVISQATIDGTITELKHAITSLCMSEILNESEMA 288
L S + P + + + SP SVI+QA+++ + EL+ A++ LC SE L++SE +
Sbjct: 525 LLPVKAAATSSTSPDANTSASAPSPTSVIAQASLESAVAELRAAVSCLCTSEDLSQSERS 584
Query: 289 VLQIERCWLEASM------ELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELG 342
VL+IER W +A+ E I L++PAV+NGFVEILFNSV +VL +FLL+EL
Sbjct: 585 VLKIERLWRDATAAGSSEAEPAILAALARPAVVNGFVEILFNSVSAQVLRVAVFLLAELA 644
Query: 343 SRDKSVIHTLTRVESDVERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKK 402
SRD +V+ TLTRV+SDV+ + ALFKKGL EA VLI LL P+ L+EMD+ E+L+ I++
Sbjct: 645 SRDDAVVQTLTRVDSDVDCLAALFKKGLAEAAVLICLLSPAPEQLVEMDLAEALVATIRR 704
Query: 403 K-EEDFLKMCLKPKSVSVLLLGQMI----GDSEESIVSSIANTIVSSKVFESVISSLEAE 457
+ED LKMC+ PK+ SV+LL Q++ G ++ S + ++S + S+ +SLEAE
Sbjct: 705 GGDEDPLKMCVSPKAASVILLSQILVEAAGATDSSTSPVPRSALLSERFIRSLAASLEAE 764
Query: 458 WAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKL 517
EER+AA+ ILLRC+ EDG CR+SIA+KA L+ V+++F D ++ +IV FL EL+KL
Sbjct: 765 PVEERLAAMRILLRCIWEDGHCRSSIAEKASLSAVLDAFHTVGDADKIDIVRFLYELLKL 824
Query: 518 NRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYR 577
+R+ E++L IK+ ++S MHT+LVYLQ+A + PVVAGLLLQLDLL EPRK+S+YR
Sbjct: 825 KKRSAAERLLRSIKEGSSFSMMHTMLVYLQSAPPEHAPVVAGLLLQLDLLVEPRKISMYR 884
Query: 578 EEAIDTLISCLRNSDYPAAQLAAAKTIVSLQGRFTTSGKSLTRAMLLKRAGVGKSYKNLT 637
EEA+D LI CL+N+D+P QL AA+TI+ L G+F++SG+ L R+ LLK A V + Y+
Sbjct: 885 EEAVDCLIQCLKNTDFPRCQLLAAETIMCLPGKFSSSGRPLARSTLLKLARVKERYR--- 941
Query: 638 RTEQIGNICGEDDDTSEEEKAADDWERKMALVLVSHDFGLLFEALEEGLNSRFAELYSAC 697
+++ + + +D EE K A DWERK A +VSH+FGL+FEAL E L ++ EL++
Sbjct: 942 QSQDLSAARADAEDEMEEGKTATDWERKAAYAVVSHEFGLVFEALSECLRTKNVELFTTS 1001
Query: 698 FESATWLIYMLNFLPDTGIFGAARVSLLKRFISAFKSANDIDDRALSLLALNSFAQDPQG 757
ATWL+YML+ LP+TG+ GAARV LL++F+ +SA DR L+++AL SF D +G
Sbjct: 1002 LVCATWLVYMLSLLPETGVLGAARVCLLRQFVVVLRSAKHGSDRVLAMVALRSFMNDREG 1061
Query: 758 LRDINIHMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVL 817
+ DI ++KD++K LREL+K S LAFEM+K+LS+G +SS D W+H+E+ VD S NG+V
Sbjct: 1062 MHDITTYIKDVLKTLRELKKSSGLAFEMLKLLSDGQESSVDMWSHKEINQVDCSSNGEVT 1121
Query: 818 SIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDK 877
S+ ++ IFSGHSDGT+KVW G +IL L+ + +EHTKA+T L++LQS E L+SGSLD+
Sbjct: 1122 SVVYLKNYIFSGHSDGTLKVWEGSENILRLVHEAQEHTKAITSLSVLQSEEKLFSGSLDR 1181
Query: 878 TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRN-GKTKLLNSSK 936
+ RVW + + CV+VHD +D +Q+LAV++++ CF+PQGAG+KV N G +KLLN +K
Sbjct: 1182 SIRVWQFRDGVLRCVEVHDTRDPVQSLAVASAVACFVPQGAGVKVLSWNSGNSKLLNPNK 1241
Query: 937 YPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYT 996
Y + +ALV GK++CGC DG+IQEIDLA+GT IQ+G +++LGKA+PV+ALQVH+GL+YT
Sbjct: 1242 YVRSMALVHGKLFCGCNDGSIQEIDLASGTLGVIQSGSKRILGKASPVYALQVHDGLLYT 1301
Query: 997 AST---SLD-GAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQKR 1052
ST S+D GA+VK+WS +NY +VGS+ T +E R++VVS++L+Y+ + VEIW +++
Sbjct: 1302 GSTPSSSVDGGASVKVWSCANYGLVGSMATAAEARSLVVSADLIYVASRTAAVEIWSREK 1361
Query: 1053 QIRIETLQTGTSG-KVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094
RI TLQ G G +VQCMA+D + + LV+GTSDGRIQAWGL+
Sbjct: 1362 LARIGTLQAGGPGCRVQCMAVDADGDVLVVGTSDGRIQAWGLT 1404
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|414875638|tpg|DAA52769.1| TPA: hypothetical protein ZEAMMB73_576745 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 974 bits (2518), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/1045 (48%), Positives = 712/1045 (68%), Gaps = 77/1045 (7%)
Query: 116 MASLEPRQRQIRKQKQPIFVESSCSPDHLIMADADNPPGIGKHTPPKDFVCPITTHIFDD 175
++S +PR R Q P E + P + DA + PKDFVCPIT+ +FDD
Sbjct: 365 LSSKQPRPRADAGQLSP---EPASFP---VRCDAAAVDPLQPLPTPKDFVCPITSQVFDD 418
Query: 176 PVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQN---- 231
PVTLETGQTYERRAIQEW++RGN++CPITRQ+L +LPKTNYVLKRLI +W++Q
Sbjct: 419 PVTLETGQTYERRAIQEWLDRGNATCPITRQRLHGAQLPKTNYVLKRLIGAWRDQRRTPS 478
Query: 232 -----------------------------PGGLDL-----SHSEPMSKSIVPSNSPNSVI 257
P L + S P + + + SP SVI
Sbjct: 479 PSSSPSPSPPPATPPPAPATAMAGDSPAPPFPLPVKAAAASSPSPDANTSASAPSPTSVI 538
Query: 258 SQATIDGTITELKHAITSLCMSEILNESEMAVLQIERCWLEASM-----ELDIQIMLSKP 312
+QA+++ + EL+ A++ LC SE L +SE +VL+IER W +A+ E I L++P
Sbjct: 539 AQASLESAVAELRAAVSCLCTSEDLAQSERSVLKIERLWRDATAGGADAEPAILAALARP 598
Query: 313 AVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGLLE 372
AV+NGFVEILFNSV +VL +FLL+EL SRD +V+ TLTRV+SDV+ + ALFKKGL E
Sbjct: 599 AVLNGFVEILFNSVSAQVLRVAVFLLAELASRDDAVVQTLTRVDSDVDCLAALFKKGLAE 658
Query: 373 AVVLIDLLRPSTRTLIEMDMMESLMTVIKKK--EEDFLKMCLKPKSVSVLLLGQMIGDSE 430
A VLI LL P+ L+EMD+ E+L+ I++ +ED LKMC+ PK+ SV+LL Q++ +
Sbjct: 659 AAVLICLLSPAPEQLVEMDLAEALVATIRRGGGDEDPLKMCVSPKAASVILLSQILVEDA 718
Query: 431 ESIVSSIA--------NTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNS 482
+ + + ++S + S+ +SLEAE EER+AA+ ILLRC+ EDG CR S
Sbjct: 719 AAAADDDSSSTPPVPRSALMSERFIRSLAASLEAEPVEERLAAMRILLRCIWEDGHCRRS 778
Query: 483 IADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTL 542
IA+KA L V+++F A D ++ +IV FL EL+KL +R+ E++L IK+ G++S MHTL
Sbjct: 779 IAEKASLGAVLDAFHAVGDADKIDIVRFLYELLKLKKRSAAERLLRTIKEGGSFSMMHTL 838
Query: 543 LVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAK 602
LVYLQ+A + PVVAGLLLQLDLL EPRK+S+YREEA+D LI CL+N+D+P QL AA+
Sbjct: 839 LVYLQSAPPEHSPVVAGLLLQLDLLVEPRKISMYREEALDCLIQCLKNADFPRCQLLAAE 898
Query: 603 TIVSLQGRFTTSGKSLTRAMLLKRAGVGKSYKNLTRTEQIGNICGEDDDTSEEEKAADDW 662
TI+ L GRF++SG+ L R+ LLK A V + Y+ +++ + + +D EE KAA +W
Sbjct: 899 TIMCLPGRFSSSGRPLARSTLLKLARVKERYR---QSQDLSAARADGEDEMEEGKAASEW 955
Query: 663 ERKMALVLVSHDFGLLFEALEEGLNSRFAELYSACFESATWLIYMLNFLPDTGIFGAARV 722
ERK A +VSH+FGL+FEAL E L ++ AEL++ A WL++ML+ LPDTG+ GAARV
Sbjct: 956 ERKAAYAVVSHEFGLVFEALSECLRTKNAELFTTSLVCAAWLVHMLSLLPDTGVLGAARV 1015
Query: 723 SLLKRFISAFKSANDIDDRALSLLALNSFAQDPQGLRDINIHMKDIMKGLRELRKYSPLA 782
LL++F+ +SA DR L+++AL SF D +G+ DI ++KD+++ LREL+K S LA
Sbjct: 1016 CLLRQFVVVLRSAKHGSDRVLAMVALRSFMNDREGMHDITTYIKDVLRTLRELKKSSGLA 1075
Query: 783 FEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRG 842
FEM+K+LS+G +SS D W+H+E+ VD S NG+V S+ + IFSGHSDGT+KVW G
Sbjct: 1076 FEMLKLLSDGQESSVDMWSHKEINQVDCSANGEVTSVVYLNNYIFSGHSDGTLKVWQGSE 1135
Query: 843 SILHLIQQIREHTKAVTGLAIL--QSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQ 900
+IL L+ + +EH+KA+T L++L +S E LYSGSLD++ R W + + + CV+VHD +D
Sbjct: 1136 NILALVHEAQEHSKAITSLSVLHSESEEKLYSGSLDRSIRAWQLRDGVLRCVEVHDTRDP 1195
Query: 901 IQNLAVSNSILCFIPQGAGIKV-HLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQE 959
+Q+LAV++++ CF+PQGAG+KV +G ++++N++KY + +ALV GK++CGC DG++QE
Sbjct: 1196 VQSLAVASAVACFVPQGAGVKVLSWGSGSSRVVNANKYVRSMALVHGKLFCGCSDGSVQE 1255
Query: 960 IDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS----------LDGAAVKMW 1009
IDLA+GT IQ G +++LGKA+PV+ALQ H GL+YT T GAAVK+W
Sbjct: 1256 IDLASGTLGVIQPGSKRILGKASPVYALQAHGGLLYTGGTPSSSSAASADGGGGAAVKVW 1315
Query: 1010 STSNYNMVGSLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQC 1069
S +NY +VGS+ T +E R++VVS++LVY+ + VEIW +++ RI TLQ G G+VQC
Sbjct: 1316 SCANYGLVGSMATAAEARSLVVSADLVYVASRAAAVEIWSREKLARIGTLQAG--GRVQC 1373
Query: 1070 MALDDNEEFLVIGTSDGRIQAWGLS 1094
MA+D + + LV+GTSDG+IQAWGL+
Sbjct: 1374 MAVDADGDVLVVGTSDGKIQAWGLT 1398
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1094 | ||||||
| TAIR|locus:2013990 | 628 | AT1G71020 [Arabidopsis thalian | 0.272 | 0.474 | 0.270 | 1.2e-14 | |
| UNIPROTKB|Q0IMG9 | 694 | SPL11 "E3 ubiquitin-protein li | 0.093 | 0.146 | 0.421 | 1.3e-13 | |
| TAIR|locus:2017719 | 612 | AT1G23030 [Arabidopsis thalian | 0.333 | 0.596 | 0.25 | 4e-13 | |
| TAIR|locus:2075140 | 660 | PUB13 "plant U-box 13" [Arabid | 0.075 | 0.125 | 0.494 | 2e-12 | |
| UNIPROTKB|Q5VRH9 | 611 | PUB12 "U-box domain-containing | 0.092 | 0.165 | 0.405 | 4.8e-12 | |
| TAIR|locus:2082682 | 632 | PUB14 "plant U-box 14" [Arabid | 0.169 | 0.292 | 0.307 | 6.8e-12 | |
| TAIR|locus:2032472 | 771 | AT1G24330 [Arabidopsis thalian | 0.084 | 0.119 | 0.432 | 9.7e-12 | |
| TAIR|locus:2010424 | 768 | PUB45 "plant U-box 45" [Arabid | 0.152 | 0.217 | 0.311 | 1.2e-11 | |
| TAIR|locus:2014584 | 811 | PUB43 "plant U-box 43" [Arabid | 0.273 | 0.368 | 0.236 | 5.6e-11 | |
| TAIR|locus:2013688 | 729 | PUB17 "plant U-box 17" [Arabid | 0.287 | 0.432 | 0.262 | 6.1e-11 |
| TAIR|locus:2013990 AT1G71020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 222 (83.2 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 92/340 (27%), Positives = 156/340 (45%)
Query: 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNY 218
T P+DF+CPI+ + DP + TGQTYER IQ WI+ GN SCP T+QKL + L NY
Sbjct: 242 TIPEDFLCPISLELMKDPAIVSTGQTYERSFIQRWIDCGNLSCPKTQQKLENFTLTP-NY 300
Query: 219 VLKRLIASWQEQNPGGLDLSHSEPMSKSIVPSNSPNSVISQATIDGTITELKHAITSLCM 278
VL+ LI+ W + H+ + + NS S + G ++ ++ + L
Sbjct: 301 VLRSLISQWCTK--------HNIEQPGGYMNGRTKNSDGSFRDLSGDMSAIRALVCKLS- 351
Query: 279 SEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLL 338
S+ + + AV +I + D +I++++ I V++L + D E + +
Sbjct: 352 SQSIEDRRTAVSEIRSL---SKRSTDNRILIAEAGAIPVLVKLLTSDGDTETQENAVTCI 408
Query: 339 SELGSRDKSVIHTLTRVESDVERIVALFKKGLLEA-----VVLIDL-LRPSTRTLIE--- 389
L + + L + V IV + + G +EA L L L + +I
Sbjct: 409 LNLSIYEHN--KELIMLAGAVTSIVLVLRAGSMEARENAAATLFSLSLADENKIIIGASG 466
Query: 390 --MDMMESLM--TVIKKKEED--FLKMCL----KPKSVS---VLLLGQMIGDSEESIVSS 436
M +++ L +V KK+ +C+ K ++V V L +M+ DS ++
Sbjct: 467 AIMALVDLLQYGSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKMLTDSSSERMAD 526
Query: 437 IANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQED 476
A TI+S + S+ A+ A R A+ L+ C+Q+D
Sbjct: 527 EALTILSV-----LASNQVAKTAILRANAIPPLIDCLQKD 561
|
|
| UNIPROTKB|Q0IMG9 SPL11 "E3 ubiquitin-protein ligase SPL11" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 210 (79.0 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 48/114 (42%), Positives = 68/114 (59%)
Query: 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNY 218
T P +F CPI+ + DPV + TGQTYER I++WI G+ +CP T+QK+S++ L NY
Sbjct: 272 TIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSALTP-NY 330
Query: 219 VLKRLIASWQEQNPGGLDLSHSEPMSKSIVPSNSPNSVIS---QATIDGTITEL 269
VL+ LI+ W E N G+ EP +S P N P S +A ID +++L
Sbjct: 331 VLRSLISQWCETN--GM-----EPPKRSTQP-NKPTPACSSSERANIDALLSKL 376
|
|
| TAIR|locus:2017719 AT1G23030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 209 (78.6 bits), Expect = 4.0e-13, P = 4.0e-13
Identities = 99/396 (25%), Positives = 173/396 (43%)
Query: 142 DHLIMADADNPPGIGKHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSC 201
D ++ + D K T P DF+CP++ + DPV + TGQTYER IQ WI+ GN +C
Sbjct: 223 DKMVNKNTDESKKSDKLTIPVDFLCPVSLELMKDPVIVATGQTYERAYIQRWIDCGNLTC 282
Query: 202 PITRQKLSSTKLPKTNYVLKRLIASW-QEQN---PGGLDLSHSEPMSKSIVPSNSPNSVI 257
P T+QKL + L NYVL+ LI+ W E N P G ++ V +
Sbjct: 283 PKTQQKLENFTLTP-NYVLRSLISRWCAEHNIEQPAGYINGRTKNSGDMSVIRALVQRLS 341
Query: 258 SQATID--GTITELKHAITSLCMSEILNESEMAV-LQIERCWLE--ASMELDIQIMLSKP 312
S++T D ++E++ + IL A+ + + E A+ E I +L+
Sbjct: 342 SRSTEDRRNAVSEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVATQENAITCVLNLS 401
Query: 313 AVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGLLE 372
N I+F +++ + + +R+ + + +D +I+ + G +
Sbjct: 402 IYENNKELIMFAGAVTSIVQ--VLRAGTMEARENAAATLFSLSLADENKII-IGGSGAIP 458
Query: 373 AVVLIDLLRPSTRTLIEMDMMESL--MTVIKKKEEDFLKMCLKPKSVSVL---LLGQMIG 427
A L+DLL T + D +L + + + ++ + V +L +M+
Sbjct: 459 A--LVDLLENGTPRG-KKDAATALFNLCIYHGNKGRAVRAGIVTALVKMLSDSTRHRMV- 514
Query: 428 DSEESIVSSIANT------IVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRN 481
D +I+S +AN IV + ++I L+ + R A ILL + D +
Sbjct: 515 DEALTILSVLANNQDAKSAIVKANTLPALIGILQTDQTRNRENAAAILLSLCKRDTEKLI 574
Query: 482 SIADKAELAPVME-SFMAASDGERFEIVCFLSELVK 516
+I + P+M+ S G+R I L EL++
Sbjct: 575 TIGRLGAVVPLMDLSKNGTERGKRKAIS--LLELLR 608
|
|
| TAIR|locus:2075140 PUB13 "plant U-box 13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 203 (76.5 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 44/89 (49%), Positives = 58/89 (65%)
Query: 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVL 220
P DF CPI+ + DPV + +GQTYER I++WIE G+S+CP T+Q L+ST L NYVL
Sbjct: 257 PDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCPKTQQALTSTTLTP-NYVL 315
Query: 221 KRLIASWQEQNPGGLDLSHSEPMSKSIVP 249
+ LIA W E N D+ +P S S+ P
Sbjct: 316 RSLIAQWCEAN----DIEPPKPPS-SLRP 339
|
|
| UNIPROTKB|Q5VRH9 PUB12 "U-box domain-containing protein 12" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 199 (75.1 bits), Expect = 4.8e-12, P = 4.8e-12
Identities = 43/106 (40%), Positives = 62/106 (58%)
Query: 142 DHLIMADADNPPGIGKHTP--PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNS 199
DH A I +P P +F CPI+ + DPV + +GQTYER IQ+W++ G+
Sbjct: 208 DHANDALTTRSASIKHRSPIIPDEFRCPISLELMQDPVIVSSGQTYERSCIQKWLDSGHK 267
Query: 200 SCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGGLDLSHSEPMSK 245
+CP T+Q LS T L N+VLK LI+ W E N G++L ++ S+
Sbjct: 268 TCPKTQQPLSHTSLTP-NFVLKSLISQWCEAN--GIELPKNKQNSR 310
|
|
| TAIR|locus:2082682 PUB14 "plant U-box 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 210 (79.0 bits), Expect = 6.8e-12, Sum P(2) = 6.8e-12
Identities = 64/208 (30%), Positives = 104/208 (50%)
Query: 142 DHLIMADADNPPGIG-----KH-TP--PKDFVCPITTHIFDDPVTLETGQTYERRAIQEW 193
D + M +D P G +H +P P+ F CPI+ + DPV + TGQTYER +IQ+W
Sbjct: 222 DFVTMESSDPDPSTGSRIVSRHRSPVIPEYFRCPISLELMKDPVIVSTGQTYERSSIQKW 281
Query: 194 IERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGGLDLSHSEPMSKSIVPSNSP 253
++ G+ +CP +++ L L NYVLK LIA W E N G++L ++ ++ S
Sbjct: 282 LDAGHKTCPKSQETLLHAGLTP-NYVLKSLIALWCESN--GIELPQNQGSCRTTKIGGSS 338
Query: 254 NSVISQATIDGTITELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPA 313
+S + + + +L + T E + A R L A +D ++ +++
Sbjct: 339 SSDCDRTFVLSLLEKLANGTT---------EQQRAAAGELR--LLAKRNVDNRVCIAEAG 387
Query: 314 VINGFVEILFNSVDPRVLEATIFLLSEL 341
I VE+L +S DPR E ++ L L
Sbjct: 388 AIPLLVELL-SSPDPRTQEHSVTALLNL 414
|
|
| TAIR|locus:2032472 AT1G24330 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 190 (71.9 bits), Expect = 9.7e-12, Sum P(2) = 9.7e-12
Identities = 45/104 (43%), Positives = 62/104 (59%)
Query: 160 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYV 219
PP++ CPI+ + DPV + +GQTYER I++W G++SCP T+Q+L L NY
Sbjct: 275 PPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNSCPKTQQQLPHLSLTP-NYC 333
Query: 220 LKRLIASWQEQN--------PGGLDLSHSEPMSKSIVPSNSPNS 255
+K LIASW EQN P LDL++ ++ S S SPNS
Sbjct: 334 VKGLIASWCEQNGITVPTGPPESLDLNYWR-LAMS--DSESPNS 374
|
|
| TAIR|locus:2010424 PUB45 "plant U-box 45" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 197 (74.4 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 58/186 (31%), Positives = 94/186 (50%)
Query: 160 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYV 219
PP++ CPI+ + DPV + +GQTYER I++W G+++CP T Q+LS L NY
Sbjct: 279 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWFSDGHNTCPKTHQQLSHLCLTP-NYC 337
Query: 220 LKRLIASWQEQN----PGG----LDLSHSEPMSKSIVPSNSPNSV--ISQATI-DGTITE 268
+K LI+SW EQN P G LDL++ ++ S+ S S + + D +
Sbjct: 338 VKALISSWCEQNGVQVPDGPPESLDLNYWR-LALSVSESTDTRSAKRVGSCKLKDVKVVP 396
Query: 269 LKHAIT---SLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNS 325
L+ + T C SE E ++ + +ERC + D+ + K V+ +L +
Sbjct: 397 LEESGTIKEEACESEY-QEDQVTL--VERCTELLTTLTDVDTLRKKCRVVEQIRVLLKDD 453
Query: 326 VDPRVL 331
+ R+L
Sbjct: 454 EEARIL 459
|
|
| TAIR|locus:2014584 PUB43 "plant U-box 43" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 191 (72.3 bits), Expect = 5.6e-11, P = 5.6e-11
Identities = 80/338 (23%), Positives = 155/338 (45%)
Query: 164 FVCPITTHIFDDPVTLETGQTYERRAIQEWIE--RGNS---SCPITRQKLSSTKLPKTNY 218
F+CP+T + +PVTLE GQT+ER AI++W + R N SCPIT ++LS T L +
Sbjct: 29 FICPLTKQVMHNPVTLENGQTFEREAIEKWFQECRENGQPLSCPITSKELSITDL-SPSI 87
Query: 219 VLKRLIASWQEQNPG-GLDLSHSEPMSKSIVPSNSPNSVISQATIDGTITELKHAITSLC 277
L+ I W+ +N LD++ +S+ N+ +++ + E+ I +
Sbjct: 88 ALRNTIEEWRARNDALKLDIAR-----QSLYLGNAETNILLALK---NVREICRNIRKI- 138
Query: 278 MSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFL 337
+ N V I +S E+ + + + V+ G E + + +
Sbjct: 139 RQRVCNPQ--LVRLITDMLKSSSHEVRCKALQTLQVVVEGDEESKAIVAEGDTVRTIVKF 196
Query: 338 LSELGSRDK----SVIHTLTRVESDVERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMM 393
LS+ S+ + SV+ L++ E+ E+I ++ G + ++L+ L + + ++
Sbjct: 197 LSQEPSKGREAAVSVLFELSKSEALCEKIGSIH--GAI--ILLVGLTSSKSENVSTVEKA 252
Query: 394 ESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVS--------SIAN---TIV 442
+ +T +++ EE+ +M + + LL +++ S E+ VS ++ N IV
Sbjct: 253 DKTLTNLERSEENVRQMAINGRLQP--LLAKLLEGSPETKVSMAFYLGVLALNNDVKVIV 310
Query: 443 SSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCR 480
+ V S+I + +R AA+G L +G +
Sbjct: 311 AQTVGSSLIDLMRTRDMSQREAALGALNNISSFEGSAK 348
|
|
| TAIR|locus:2013688 PUB17 "plant U-box 17" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 190 (71.9 bits), Expect = 6.1e-11, P = 6.1e-11
Identities = 93/354 (26%), Positives = 158/354 (44%)
Query: 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNY 218
T PKDFVCPI+ + DPV + TGQTY+R +I WIE G+ +CP T Q L +++ N
Sbjct: 304 TVPKDFVCPISLDLMTDPVIISTGQTYDRNSIARWIEEGHCTCPKTGQMLMDSRIVP-NR 362
Query: 219 VLKRLIASWQEQNPGGLDLSHSEPMSKSIVPSNSPNSVISQATIDGTITELKHAITSLCM 278
LK LI W + G +S+ + +SPN + A E A S+ +
Sbjct: 363 ALKNLIVQWCTAS-G---ISYESEFT------DSPNESFASALPTKAAVEANKATVSILI 412
Query: 279 SEILNESEMA-VLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFL 337
+ + S+ A + L A + + +++ I +L S + E ++
Sbjct: 413 KYLADGSQAAQTVAAREIRLLAKTGKENRAYIAEAGAIPHLCRLL-TSENAIAQENSVTA 471
Query: 338 LSELGSRDKSVIHTLTRVESD-VERIVALFKKGL-LEA-----VVLIDL--LRPSTRTLI 388
+ L +K+ + E D +E IV++ GL +EA L L + + +
Sbjct: 472 MLNLSIYEKNKSRIME--EGDCLESIVSVLVSGLTVEAQENAAATLFSLSAVHEYKKRIA 529
Query: 389 EMDM-MESLMTVIK----KKEEDFLKMCLKPKSVSVLLLGQMI-GDSEESIVSSIANTIV 442
+D +E+L +++ + ++D + L S +MI G S+V ++ N V
Sbjct: 530 IVDQCVEALALLLQNGTPRGKKDAVT-ALYNLSTHPDNCSRMIEGGGVSSLVGALKNEGV 588
Query: 443 SSKVFES----VISSLEAEW-AEERIAAVGIL--LRCMQEDGKCRNSIADKAEL 489
+ + + V SL AE +E A G++ +RC GK N++A EL
Sbjct: 589 AEEAAGALALLVRQSLGAEAIGKEDSAVAGLMGMMRCGTPRGK-ENAVAALLEL 641
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.3.2 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1094 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 6e-25 | |
| smart00504 | 63 | smart00504, Ubox, Modified RING finger domain | 5e-20 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 7e-16 | |
| pfam04564 | 73 | pfam04564, U-box, U-box domain | 2e-15 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-12 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-11 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-10 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-09 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 6e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-05 | |
| pfam13445 | 55 | pfam13445, zf-RING_LisH, RING-type zinc-finger, Li | 1e-05 | |
| pfam11789 | 57 | pfam11789, zf-Nse, Zinc-finger of the MIZ type in | 3e-04 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 0.004 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 6e-25
Identities = 73/313 (23%), Positives = 121/313 (38%), Gaps = 55/313 (17%)
Query: 787 KVLSNGHDSSADFWN--HRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG 842
+ + D + W+ EL+ G V +A D + SG SD TI++W
Sbjct: 23 LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82
Query: 843 SILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQV-HDIKDQI 901
++ + HT V+ +A G +L S S DKT +VW + + C+ D +
Sbjct: 83 G--ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK--CLTTLRGHTDWV 138
Query: 902 QNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEID 961
++A S V QDG I+ D
Sbjct: 139 NSVAFS--------------------PDGTF---------------VASSSQDGTIKLWD 163
Query: 962 LATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP 1021
L TG TGH V+++ S+S DG +K+W S +G+L
Sbjct: 164 LRTGKCVATLTGHT------GEVNSVAFSPDGEKLLSSSSDGT-IKLWDLSTGKCLGTLR 216
Query: 1022 T-LSEVRAMVVS--SELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEF 1078
+ V ++ S L+ G + GT+ +WD + ++TL G + V +A + +
Sbjct: 217 GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS-GHTNSVTSLAWSPDGKR 275
Query: 1079 LVIGTSDGRIQAW 1091
L G++DG I+ W
Sbjct: 276 LASGSADGTIRIW 288
|
Length = 289 |
| >gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 5e-20
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKL-PKTNYVLK 221
+F+CPI+ + DPV L +GQTYER AI++W+ + + P+T Q L+ L P N LK
Sbjct: 1 EFLCPISLEVMKDPVILPSGQTYERSAIEKWLLS-HGTDPVTGQPLTHEDLIP--NLALK 57
Query: 222 RLIASW 227
I W
Sbjct: 58 SAIQEW 63
|
Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 7e-16
Identities = 58/252 (23%), Positives = 99/252 (39%), Gaps = 49/252 (19%)
Query: 847 LIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSI-GNEEIHCVQVHDIKDQIQNLA 905
L + ++ HT VT +A G++L +GS D T +VW + E + ++ H ++++A
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGH--TGPVRDVA 58
Query: 906 VSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATG 965
S + G D I+ DL TG
Sbjct: 59 ASAD-----------------------------------GTYLASGSSDKTIRLWDLETG 83
Query: 966 TFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT-LS 1024
TGH V ++ +S+S D +K+W + +L
Sbjct: 84 ECVRTLTGHTS------YVSSVAFSPDGRILSSSSRDK-TIKVWDVETGKCLTTLRGHTD 136
Query: 1025 EVRAMVVS--SELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIG 1082
V ++ S V + GT+++WD + + TL TG +G+V +A + E L+
Sbjct: 137 WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL-TGHTGEVNSVAFSPDGEKLLSS 195
Query: 1083 TSDGRIQAWGLS 1094
+SDG I+ W LS
Sbjct: 196 SSDGTIKLWDLS 207
|
Length = 289 |
| >gnl|CDD|203049 pfam04564, U-box, U-box domain | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 2e-15
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVL 220
P +F+ PIT + DPV L +G TY+R I+ + + + P TR+ L+ +L N L
Sbjct: 2 PDEFLDPITLELMKDPVILPSGITYDRSTIERHLLSVDPTDPFTREPLTHDQL-IPNLEL 60
Query: 221 KRLIASWQEQNP 232
K I +W E+N
Sbjct: 61 KEKIDAWLEENR 72
|
This domain is related to the Ring finger pfam00097 but lacks the zinc binding residues. Length = 73 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 3e-12
Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 12/104 (11%)
Query: 787 KVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDK--IFSGHSDGTIKVW---T 839
K+LS+ D + W+ + + V S+A D + SG DGTI+VW T
Sbjct: 191 KLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT 250
Query: 840 GRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWS 883
G +Q + HT +VT LA G+ L SGS D T R+W
Sbjct: 251 GE-----CVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.0 bits (162), Expect = 3e-11
Identities = 67/322 (20%), Positives = 112/322 (34%), Gaps = 39/322 (12%)
Query: 801 NHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQ-------QIRE 853
N S K + L+ +R
Sbjct: 4 NSSTSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRG 63
Query: 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE-------------IHCVQVHDIKDQ 900
H ++T +A GE+L SGS D T ++W + N E + + +
Sbjct: 64 HEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGN 123
Query: 901 IQNLAVS---NSILCFIPQGAGIKVHLRNGKTKLLNSSKY-PKCLALVQGKVYCGCQDGA 956
LA S ++ + G + G ++ + S + P L DG
Sbjct: 124 SILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLA----SGSSLDGT 179
Query: 957 IQEIDLATGTFATIQTGHRKLLGKANPVHALQVH-NGLVYTASTSLDGAAVKMWSTSNYN 1015
I+ DL TG + GH PV +L +G + AS S DG +++W S
Sbjct: 180 IKLWDLRTGKPLSTLAGHTD------PVSSLAFSPDGGLLIASGSSDGT-IRLWDLSTGK 232
Query: 1016 MVGSL---PTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMAL 1072
++ S + S V + L+ G GT+ +WD + + +G S V +A
Sbjct: 233 LLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAF 292
Query: 1073 DDNEEFLVIGTSDGRIQAWGLS 1094
+ + L G+SDG ++ W L
Sbjct: 293 SPDGKLLASGSSDGTVRLWDLE 314
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.7 bits (156), Expect = 1e-10
Identities = 75/331 (22%), Positives = 137/331 (41%), Gaps = 34/331 (10%)
Query: 788 VLSNGHDSSADFWN----HRELVHVDSSENGKVLSIACF---RDKIFSGHS--DGTIKVW 838
+LS D + W+ + + ++ + V +A + I S DGT+K+W
Sbjct: 80 LLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139
Query: 839 TGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGS-LDKTARVWSIGNEEIHCVQVHDI 897
LI+ + H+++VT LA G++L SGS LD T ++W + + +
Sbjct: 140 DLSTPG-KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST-LAGH 197
Query: 898 KDQIQNLAVS-NSILCFIPQGAGIKVHLRNGKTKLLNSSKYPK-------CLALVQGKVY 949
D + +LA S + L + + L + T L S + +
Sbjct: 198 TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLA 257
Query: 950 CGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMW 1009
G DG I+ DL + + R L G ++ V ++ AS S DG V++W
Sbjct: 258 SGSSDGTIRLWDLRSS-----SSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGT-VRLW 311
Query: 1010 STSNYNMVGSLPTL---SEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQTGT 1063
++ SL V ++ S + LV G GT+ +WD + ++TL+ +
Sbjct: 312 DLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS 371
Query: 1064 SGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094
+ V ++ + + G++DG ++ W LS
Sbjct: 372 N--VLSVSFSPDGRVVSSGSTDGTVRLWDLS 400
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.9 bits (146), Expect = 2e-09
Identities = 60/276 (21%), Positives = 105/276 (38%), Gaps = 49/276 (17%)
Query: 788 VLSNGHDSSADFWN----HRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGS 843
+ S D + W+ + + V S + + SG SDGTI++W R S
Sbjct: 214 IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSS 273
Query: 844 ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQN 903
L++ + H+ +V +A G++L SGS D T R+W + ++
Sbjct: 274 -SSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL-------------- 318
Query: 904 LAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA 963
+ G ++S + +L+ V G DG I+ DL
Sbjct: 319 ----------------LSSLTLKGHEGPVSSLSFSPDGSLL---VSGGSDDGTIRLWDLR 359
Query: 964 TGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-T 1022
TG GH + V ++ +S S DG V++W S +++ +L
Sbjct: 360 TGKPLKTLEGH-------SNVLSVSFSPDGRVVSSGSTDG-TVRLWDLSTGSLLRNLDGH 411
Query: 1023 LSEVRAMVVSSELVYL--GCKGGTVEIWDQKRQIRI 1056
S V ++ S + L G T+ +WD K ++
Sbjct: 412 TSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKS 447
|
Length = 466 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 6e-06
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWS 883
L++ ++ HT VT +A G+ L SGS D T ++W
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 1e-05
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 847 LIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWS 883
L++ ++ HT VT +A G +L SGS D T RVW
Sbjct: 3 LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation motif | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-05
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 164 FVCPITTHIFDD----PVTLETGQTYERRAIQEWIERGNS-SCPI 203
FVCPI+ + D PV L G Y R+A+++ + G CP
Sbjct: 11 FVCPISKEVMTDEENPPVMLPCGHVYSRKALEKLAKNGGKFKCPY 55
|
This zinc-finger is the dimerisation motif for LisH proteins, and is also a typical RING-type of plant ubiquitin ligases. Length = 55 |
| >gnl|CDD|192832 pfam11789, zf-Nse, Zinc-finger of the MIZ type in Nse subunit | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 3e-04
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 163 DFVCPITTHIFDDPVTLET-GQTYERRAIQEWIERGNSS-CPI 203
CP+T F++PVT + +E+ AI + R + CP+
Sbjct: 11 SLTCPLTLQPFEEPVTSKKCNHVFEKDAILSMLRRNKTVKCPV 53
|
Nse1 and Nse2 are novel non-SMC subunits of the fission yeast Smc5-6 DNA repair complex. This family is the zinc-finger domain similar to the MIZ type of zinc-finger. Length = 57 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.8 bits (94), Expect = 0.004
Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 5/108 (4%)
Query: 788 VLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIF---SGHSDGTIKVWTGRGSI 844
V D + W+ R + + E + F SG +DGT+++W S
Sbjct: 344 VSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLW--DLST 401
Query: 845 LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCV 892
L++ + HT VT L G+ L SGS D T R+W +
Sbjct: 402 GSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVS 449
|
Length = 466 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1094 | |||
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.98 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.97 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.97 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.97 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.97 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.97 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.97 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.97 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.97 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.96 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.96 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.96 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.96 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.96 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.96 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.96 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.95 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.95 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.95 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.95 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.95 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.95 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.95 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.95 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.95 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.94 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.94 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.94 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.94 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.93 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.93 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.93 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.93 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.93 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.92 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.92 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.92 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.92 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.92 | |
| PTZ00420 | 568 | coronin; Provisional | 99.92 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.92 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.92 | |
| PTZ00421 | 493 | coronin; Provisional | 99.92 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.91 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.91 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.91 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.91 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.91 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.9 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.9 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.9 | |
| PTZ00421 | 493 | coronin; Provisional | 99.9 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.9 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.9 | |
| PTZ00420 | 568 | coronin; Provisional | 99.89 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.89 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.89 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.88 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.88 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.88 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.88 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.87 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.87 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.87 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.87 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.86 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.86 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.86 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.86 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.85 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.84 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.84 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.84 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.84 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.84 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.84 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.83 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.83 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.83 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.83 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.83 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.82 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.82 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.82 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.82 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.81 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.81 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.81 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.81 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.81 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.81 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.8 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.8 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.79 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.79 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.79 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.78 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.76 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.75 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.75 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.75 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.75 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.75 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.74 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.74 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.73 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.72 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.72 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.71 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.71 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.71 | |
| PF04564 | 73 | U-box: U-box domain; InterPro: IPR003613 Quality c | 99.71 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.71 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.71 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.7 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.7 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.68 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.67 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.66 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.66 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.66 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.65 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.65 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.65 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.65 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.63 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.63 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.62 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.62 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.62 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.61 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.59 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.58 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.58 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.57 | |
| smart00504 | 63 | Ubox Modified RING finger domain. Modified RING fi | 99.56 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.55 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.54 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.54 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.53 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.51 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.51 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.5 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.49 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.49 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.49 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.48 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.47 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.47 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.46 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.46 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.44 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.44 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.44 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.44 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.41 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.41 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.39 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.38 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.36 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.35 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.35 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.35 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.35 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.33 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.32 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.31 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.3 | |
| PF15227 | 42 | zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: | 99.3 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.3 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.3 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.3 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.3 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.28 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.27 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.26 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.25 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.24 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.24 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.23 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.23 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.21 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.21 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.2 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.2 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.19 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.18 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.17 | |
| TIGR00599 | 397 | rad18 DNA repair protein rad18. This family is bas | 99.17 | |
| PLN03208 | 193 | E3 ubiquitin-protein ligase RMA2; Provisional | 99.16 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.15 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.15 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.14 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.11 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.09 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.09 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.06 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.04 | |
| KOG0287 | 442 | consensus Postreplication repair protein RAD18 [Re | 99.04 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.03 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.02 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.02 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.98 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.98 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.98 | |
| PF13923 | 39 | zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); | 98.97 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.96 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.96 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.96 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 98.96 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.94 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.93 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.93 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.92 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.9 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.89 | |
| PF14835 | 65 | zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM | 98.88 | |
| COG5432 | 391 | RAD18 RING-finger-containing E3 ubiquitin ligase [ | 98.86 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.86 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.85 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.85 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.84 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.83 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.82 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.82 | |
| PF00097 | 41 | zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I | 98.81 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.81 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.8 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.78 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.78 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.78 | |
| KOG0823 | 230 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.78 | |
| KOG0320 | 187 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.77 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.76 | |
| PF13445 | 43 | zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. | 98.76 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.72 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.7 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.68 | |
| PHA02929 | 238 | N1R/p28-like protein; Provisional | 98.67 | |
| PF13920 | 50 | zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); | 98.67 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.67 | |
| KOG0317 | 293 | consensus Predicted E3 ubiquitin ligase, integral | 98.66 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.66 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 98.65 | |
| PF13639 | 44 | zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C | 98.64 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.61 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 98.6 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.6 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.58 | |
| KOG2177 | 386 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.57 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.56 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.56 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.55 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.54 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.54 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.52 | |
| cd00162 | 45 | RING RING-finger (Really Interesting New Gene) dom | 98.52 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.51 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.5 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.48 | |
| PHA02926 | 242 | zinc finger-like protein; Provisional | 98.45 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 98.44 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.43 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.43 | |
| KOG0311 | 381 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.43 | |
| smart00184 | 39 | RING Ring finger. E3 ubiquitin-protein ligase acti | 98.43 | |
| PF11789 | 57 | zf-Nse: Zinc-finger of the MIZ type in Nse subunit | 98.42 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.4 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.35 | |
| PF14634 | 44 | zf-RING_5: zinc-RING finger domain | 98.35 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.34 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.34 | |
| TIGR00570 | 309 | cdk7 CDK-activating kinase assembly factor MAT1. A | 98.32 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.3 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.29 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.29 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.29 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.26 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.26 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.26 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.24 | |
| KOG2164 | 513 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.23 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.22 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.22 | |
| COG5574 | 271 | PEX10 RING-finger-containing E3 ubiquitin ligase [ | 98.19 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.16 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.14 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.14 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.13 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.13 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.12 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.1 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.09 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 98.09 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.09 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.08 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 98.08 | |
| KOG4159 | 398 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.04 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.03 | |
| KOG2660 | 331 | consensus Locus-specific chromosome binding protei | 98.01 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.0 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.0 | |
| PF12678 | 73 | zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 | 97.99 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.99 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.95 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.94 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.91 | |
| COG5222 | 427 | Uncharacterized conserved protein, contains RING Z | 97.9 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 97.9 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.88 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.87 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.83 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.8 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.79 | |
| KOG0297 | 391 | consensus TNF receptor-associated factor [Signal t | 97.78 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 97.77 | |
| KOG0824 | 324 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.75 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.69 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.68 | |
| PF12861 | 85 | zf-Apc11: Anaphase-promoting complex subunit 11 RI | 97.64 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.64 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 97.62 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.62 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.62 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.6 | |
| KOG1813 | 313 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.53 | |
| COG5152 | 259 | Uncharacterized conserved protein, contains RING a | 97.52 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 97.52 | |
| KOG2879 | 298 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.49 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.49 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.48 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.41 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.39 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.38 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.37 | |
| KOG0802 | 543 | consensus E3 ubiquitin ligase [Posttranslational m | 97.33 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.32 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.3 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.27 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.21 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.16 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.14 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 97.11 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.1 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.07 | |
| COG5243 | 491 | HRD1 HRD ubiquitin ligase complex, ER membrane com | 97.06 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.02 | |
| KOG4367 | 699 | consensus Predicted Zn-finger protein [Function un | 96.88 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.88 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.86 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.85 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 96.84 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.83 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.8 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.73 | |
| KOG2042 | 943 | consensus Ubiquitin fusion degradation protein-2 [ | 96.71 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 96.71 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.66 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 96.65 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 96.65 | |
| KOG4172 | 62 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.64 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.62 | |
| COG5540 | 374 | RING-finger-containing ubiquitin ligase [Posttrans | 96.62 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 96.61 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.55 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.55 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.54 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.53 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 96.49 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 96.46 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.44 | |
| KOG0826 | 357 | consensus Predicted E3 ubiquitin ligase involved i | 96.38 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 96.38 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 96.37 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.36 | |
| PRK09687 | 280 | putative lyase; Provisional | 96.3 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.26 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.24 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 96.22 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.21 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.14 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 96.04 | |
| KOG0804 | 493 | consensus Cytoplasmic Zn-finger protein BRAP2 (BRC | 95.98 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 95.97 | |
| KOG3039 | 303 | consensus Uncharacterized conserved protein [Funct | 95.96 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 95.81 | |
| PF04641 | 260 | Rtf2: Rtf2 RING-finger | 95.8 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 95.73 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.63 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 95.62 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 95.62 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 95.62 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.57 | |
| KOG1734 | 328 | consensus Predicted RING-containing E3 ubiquitin l | 95.55 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 95.51 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 95.49 | |
| KOG1039 | 344 | consensus Predicted E3 ubiquitin ligase [Posttrans | 95.48 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 95.47 | |
| KOG4692 | 489 | consensus Predicted E3 ubiquitin ligase [Posttrans | 95.43 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 95.41 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.26 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 95.23 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.21 | |
| PRK09687 | 280 | putative lyase; Provisional | 95.2 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.16 | |
| KOG0825 | 1134 | consensus PHD Zn-finger protein [General function | 95.12 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 95.12 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 95.02 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 94.99 | |
| COG5113 | 929 | UFD2 Ubiquitin fusion degradation protein 2 [Postt | 94.96 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 94.83 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 94.76 | |
| KOG0828 | 636 | consensus Predicted E3 ubiquitin ligase [Posttrans | 94.7 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 94.68 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 94.66 | |
| KOG3039 | 303 | consensus Uncharacterized conserved protein [Funct | 94.65 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 94.55 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 94.48 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 94.44 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 94.4 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 94.35 | |
| COG5194 | 88 | APC11 Component of SCF ubiquitin ligase and anapha | 94.33 | |
| KOG1785 | 563 | consensus Tyrosine kinase negative regulator CBL [ | 94.28 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 94.27 | |
| PF14570 | 48 | zf-RING_4: RING/Ubox like zinc-binding domain; PDB | 94.26 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 94.22 | |
| KOG3800 | 300 | consensus Predicted E3 ubiquitin ligase containing | 94.12 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 94.02 | |
| KOG4265 | 349 | consensus Predicted E3 ubiquitin ligase [Posttrans | 93.98 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 93.93 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 93.83 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 93.74 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 93.64 | |
| PF14447 | 55 | Prok-RING_4: Prokaryotic RING finger family 4 | 93.62 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 93.6 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.59 | |
| KOG1571 | 355 | consensus Predicted E3 ubiquitin ligase [Posttrans | 93.5 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 93.47 | |
| KOG2817 | 394 | consensus Predicted E3 ubiquitin ligase [Posttrans | 93.29 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 93.16 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 93.02 | |
| KOG4185 | 296 | consensus Predicted E3 ubiquitin ligase [Posttrans | 93.0 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 92.92 | |
| KOG4275 | 350 | consensus Predicted E3 ubiquitin ligase [Posttrans | 92.91 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 92.89 | |
| KOG3161 | 861 | consensus Predicted E3 ubiquitin ligase [Posttrans | 92.69 | |
| KOG1493 | 84 | consensus Anaphase-promoting complex (APC), subuni | 92.67 | |
| KOG0827 | 465 | consensus Predicted E3 ubiquitin ligase [Posttrans | 92.59 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 92.52 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 92.36 | |
| KOG2979 | 262 | consensus Protein involved in DNA repair [General | 92.23 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 92.21 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 92.04 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 91.81 |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=346.20 Aligned_cols=306 Identities=20% Similarity=0.304 Sum_probs=268.3
Q ss_pred HHHhhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCc
Q 001349 769 MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI 844 (1094)
Q Consensus 769 ~~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~ 844 (1094)
+.+|.+.+-...|+++|.++++|+.|.++|+||.. +...+..+|...|.|++|+|| .||||+.||+|++||..++.
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~ 190 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ 190 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC
Confidence 34566667778899999999999999999999987 678889999999999999998 99999999999999999885
Q ss_pred ceeEEEecccCCCeEEEEEec-----CCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCe
Q 001349 845 LHLIQQIREHTKAVTGLAILQ-----SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAG 919 (1094)
Q Consensus 845 ~~~~~~l~~H~~~V~sv~fsp-----dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~ 919 (1094)
.....+.+|...|++++|.| ..++|+++|.||+|+|||+..+. .......|..+|+++.|.+. .+
T Consensus 191 -~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-~~~~lsgHT~~VTCvrwGG~--------gl 260 (480)
T KOG0271|consen 191 -QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-CVRTLSGHTASVTCVRWGGE--------GL 260 (480)
T ss_pred -cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce-EEEEeccCccceEEEEEcCC--------ce
Confidence 46678999999999999976 56799999999999999999874 33444567889999985433 25
Q ss_pred EEEEEeCCeEEEEcC------------CCCceEEEEe-------------C-------------------------CEEE
Q 001349 920 IKVHLRNGKTKLLNS------------SKYPKCLALV-------------Q-------------------------GKVY 949 (1094)
Q Consensus 920 l~~~~~~g~i~l~~~------------~~~v~~l~~s-------------~-------------------------~~l~ 949 (1094)
+..++.|+++++|+. ..+|+.++.+ + .+++
T Consensus 261 iySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlV 340 (480)
T KOG0271|consen 261 IYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLV 340 (480)
T ss_pred EEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeE
Confidence 567778899999974 3456666655 1 2499
Q ss_pred EEEcCCeEEEEECCCCc-eeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEE
Q 001349 950 CGCQDGAIQEIDLATGT-FATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVR 1027 (1094)
Q Consensus 950 sgs~Dg~I~iwDl~~~~-~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~ 1027 (1094)
+|+.|.++.+|+....+ ++ .++.+|..-|+.+.|+||+.++++++.|. .|++||.++|+.+.+|. |-..|.
T Consensus 341 SgsDd~tlflW~p~~~kkpi------~rmtgHq~lVn~V~fSPd~r~IASaSFDk-SVkLW~g~tGk~lasfRGHv~~VY 413 (480)
T KOG0271|consen 341 SGSDDFTLFLWNPFKSKKPI------TRMTGHQALVNHVSFSPDGRYIASASFDK-SVKLWDGRTGKFLASFRGHVAAVY 413 (480)
T ss_pred EecCCceEEEecccccccch------hhhhchhhheeeEEECCCccEEEEeeccc-ceeeeeCCCcchhhhhhhccceeE
Confidence 99999999999976554 33 57789999999999999999999999995 99999999999999999 779999
Q ss_pred EEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1028 AMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1028 ~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
.++|+.| ++++||.|.+++|||+++.+....+ .||.+.|.++.|+|||..+++|+.|..+++|.
T Consensus 414 qvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DL-pGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 414 QVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDL-PGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEeccCccEEEEcCCCceEEEEEeeeeeecccC-CCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999 8999999999999999999999999 69999999999999999999999999999995
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=345.01 Aligned_cols=272 Identities=19% Similarity=0.310 Sum_probs=250.4
Q ss_pred ccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC----EEEEEECCCeEEEEecCCCcceeE
Q 001349 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD----KIFSGHSDGTIKVWTGRGSILHLI 848 (1094)
Q Consensus 775 ~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd----~LaSgs~Dg~I~vWd~~t~~~~~~ 848 (1094)
.+..+.|+.|+..|+|||.+|.++||+.. ...+++.+|++.|.++.|+|. .++||+.||+|++|++.+. .++
T Consensus 177 Pis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e--~~l 254 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE--TPL 254 (459)
T ss_pred cceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC--cch
Confidence 34467788899999999999999999998 567889999999999999994 8999999999999999998 789
Q ss_pred EEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCe
Q 001349 849 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 928 (1094)
Q Consensus 849 ~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~ 928 (1094)
..+.+|...|..++|+|+|++|+|+|.|.+-++||+.++. ..+....|...|.+++ |.|||..
T Consensus 255 ~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~-ElL~QEGHs~~v~~ia-------f~~DGSL--------- 317 (459)
T KOG0272|consen 255 QDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKS-ELLLQEGHSKGVFSIA-------FQPDGSL--------- 317 (459)
T ss_pred hhhhcchhhheeeeecCCCceeeecccccchhhcccccch-hhHhhcccccccceeE-------ecCCCce---------
Confidence 9999999999999999999999999999999999999975 4444456778888888 8888875
Q ss_pred EEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEE
Q 001349 929 TKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKM 1008 (1094)
Q Consensus 929 i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~i 1008 (1094)
+++|+.|..-++||+++|.++ ..+.+|..+|.+|.|+|+|..+++|+.|+ +++|
T Consensus 318 -------------------~~tGGlD~~~RvWDlRtgr~i------m~L~gH~k~I~~V~fsPNGy~lATgs~Dn-t~kV 371 (459)
T KOG0272|consen 318 -------------------AATGGLDSLGRVWDLRTGRCI------MFLAGHIKEILSVAFSPNGYHLATGSSDN-TCKV 371 (459)
T ss_pred -------------------eeccCccchhheeecccCcEE------EEecccccceeeEeECCCceEEeecCCCC-cEEE
Confidence 788999999999999999998 56678999999999999999999999997 9999
Q ss_pred EECCCCeEEEEec-CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeC
Q 001349 1009 WSTSNYNMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTS 1084 (1094)
Q Consensus 1009 wd~~~~~~~~~~~-~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~ 1084 (1094)
||++..+.+.+++ |..-|+.+.|+|. ++++++.|++++||...++.+++++ .||.+.|.++++++|+.+++|++.
T Consensus 372 WDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL-aGHe~kV~s~Dis~d~~~i~t~s~ 450 (459)
T KOG0272|consen 372 WDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL-AGHEGKVISLDISPDSQAIATSSF 450 (459)
T ss_pred eeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhh-cCCccceEEEEeccCCceEEEecc
Confidence 9999999988888 7888999999985 8999999999999999999999999 699999999999999999999999
Q ss_pred CCcEEEEe
Q 001349 1085 DGRIQAWG 1092 (1094)
Q Consensus 1085 DG~I~iWd 1092 (1094)
|.+|++|.
T Consensus 451 DRT~KLW~ 458 (459)
T KOG0272|consen 451 DRTIKLWR 458 (459)
T ss_pred Cceeeecc
Confidence 99999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=322.86 Aligned_cols=278 Identities=19% Similarity=0.312 Sum_probs=248.4
Q ss_pred cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 001349 804 ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 881 (1094)
Q Consensus 804 ~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~v 881 (1094)
.+...+.||.++|.|+.|+|+ .|+||+.|.++|+||+.+. .+..+.++|...|.|++|+|||+.||||+.||+|++
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te--Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~l 183 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE--TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRL 183 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC--CcceeecCCccEEEEEEECCCcchhhccccCCeEEE
Confidence 456678899999999999997 9999999999999999999 899999999999999999999999999999999999
Q ss_pred EECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC------------CCCceEEEEe-CCEE
Q 001349 882 WSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS------------SKYPKCLALV-QGKV 948 (1094)
Q Consensus 882 Wdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~------------~~~v~~l~~s-~~~l 948 (1094)
||..+|+..-.....|+..|.+++|.+-. ..|..+.++..+.||.+++|+. +..|+|+.+- +|.+
T Consensus 184 wdpktg~~~g~~l~gH~K~It~Lawep~h--l~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gli 261 (480)
T KOG0271|consen 184 WDPKTGQQIGRALRGHKKWITALAWEPLH--LVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLI 261 (480)
T ss_pred ecCCCCCcccccccCcccceeEEeecccc--cCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceE
Confidence 99999986666667889999999976643 4678889999999999999984 5679999998 6889
Q ss_pred EEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEe-----------CCcc-----------------------
Q 001349 949 YCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVH-----------NGLV----------------------- 994 (1094)
Q Consensus 949 ~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs-----------~~~~----------------------- 994 (1094)
++|+.|++|++|+...|.+. +.+.||...|+.++.+ +.+.
T Consensus 262 ySgS~DrtIkvw~a~dG~~~------r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~ 335 (480)
T KOG0271|consen 262 YSGSQDRTIKVWRALDGKLC------RELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDS 335 (480)
T ss_pred EecCCCceEEEEEccchhHH------HhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccC
Confidence 99999999999999999887 6778888899988876 2222
Q ss_pred --EEEEEECCCCEEEEEECCC-CeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceE
Q 001349 995 --YTASTSLDGAAVKMWSTSN-YNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQ 1068 (1094)
Q Consensus 995 --~las~s~Dg~~I~iwd~~~-~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~ 1068 (1094)
.+++++.|. ++.+|+... .+++..+. |..-|+.+.|||| +++++|.|..|++||..+|+.+.+| .||-+.|.
T Consensus 336 ~erlVSgsDd~-tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasf-RGHv~~VY 413 (480)
T KOG0271|consen 336 GERLVSGSDDF-TLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASF-RGHVAAVY 413 (480)
T ss_pred cceeEEecCCc-eEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhh-hhccceeE
Confidence 388988775 999999764 44666665 7788999999999 8999999999999999999999999 69999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1069 CMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1069 ~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
.++||.|.++|++|+.|.++++|++
T Consensus 414 qvawsaDsRLlVS~SkDsTLKvw~V 438 (480)
T KOG0271|consen 414 QVAWSADSRLLVSGSKDSTLKVWDV 438 (480)
T ss_pred EEEeccCccEEEEcCCCceEEEEEe
Confidence 9999999999999999999999997
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=288.28 Aligned_cols=283 Identities=18% Similarity=0.277 Sum_probs=236.9
Q ss_pred HHhhhccccccccc-cCcEEEEeeCCCCeEEEeCC-------cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEe
Q 001349 770 KGLRELRKYSPLAF-EMVKVLSNGHDSSADFWNHR-------ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWT 839 (1094)
Q Consensus 770 ~~~~~~~~~~~~~~-d~~~l~s~s~dg~I~vWd~~-------~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd 839 (1094)
++|...+....... +...+++++.|.++.+|+.. .....+.||...|..+..++| +.++++.||++++||
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWD 91 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWD 91 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEE
Confidence 34444444334443 36689999999999999876 356778899999999999997 999999999999999
Q ss_pred cCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCe
Q 001349 840 GRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAG 919 (1094)
Q Consensus 840 ~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~ 919 (1094)
+.++ +..+.|.+|+..|.+++|++|.+.++|||.|+||++||+.++....+....+.+.|.++. |+|+...
T Consensus 92 l~~g--~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvr-------fsP~~~~ 162 (315)
T KOG0279|consen 92 LATG--ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVR-------FSPNESN 162 (315)
T ss_pred ecCC--cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEE-------EcCCCCC
Confidence 9999 789999999999999999999999999999999999999886433333333356666666 6665421
Q ss_pred EEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEE
Q 001349 920 IKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAST 999 (1094)
Q Consensus 920 l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~ 999 (1094)
-.|++++.|++|++||+++-+.. ..+.||.+.++.++++|||..+++|
T Consensus 163 --------------------------p~Ivs~s~DktvKvWnl~~~~l~------~~~~gh~~~v~t~~vSpDGslcasG 210 (315)
T KOG0279|consen 163 --------------------------PIIVSASWDKTVKVWNLRNCQLR------TTFIGHSGYVNTVTVSPDGSLCASG 210 (315)
T ss_pred --------------------------cEEEEccCCceEEEEccCCcchh------hccccccccEEEEEECCCCCEEecC
Confidence 14899999999999999988876 6778899999999999999999999
Q ss_pred ECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEecccCC--------cceEEE
Q 001349 1000 SLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGTS--------GKVQCM 1070 (1094)
Q Consensus 1000 s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~--------~~I~~l 1070 (1094)
+.|| .+.+||++.++.+.++.+...|.+++|+|+ +.+++..+..|+|||+.++.++..+...-. -...++
T Consensus 211 gkdg-~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clsl 289 (315)
T KOG0279|consen 211 GKDG-EAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSL 289 (315)
T ss_pred CCCc-eEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEE
Confidence 9997 999999999999999999999999999999 666666667799999999988877642211 135788
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1071 ALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1071 ~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
+||+||..|++|-.||.|++|.+.
T Consensus 290 aws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 290 AWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEcCCCcEEEeeecCCcEEEEEee
Confidence 999999999999999999999873
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=272.85 Aligned_cols=281 Identities=16% Similarity=0.300 Sum_probs=247.7
Q ss_pred HHHHHhhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCC
Q 001349 767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG 842 (1094)
Q Consensus 767 ~~~~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t 842 (1094)
.++++|..-+....++.|.+++++++.||.+.|||.- ...+.+......|..++|+|. ++|.|+-|+...||++.+
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~ 128 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST 128 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence 4556666666678899999999999999999999975 456677778899999999995 999999999999999985
Q ss_pred C----cceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEee-CC
Q 001349 843 S----ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP-QG 917 (1094)
Q Consensus 843 ~----~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fsp-dg 917 (1094)
. .....+.+.+|++.+.++.|-+| ..|+|+|.|.+..+||+++|+ .....+.|...|.++. ++| ++
T Consensus 129 ~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~-~~~~f~GH~gDV~sls-------l~p~~~ 199 (343)
T KOG0286|consen 129 RDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQ-QTQVFHGHTGDVMSLS-------LSPSDG 199 (343)
T ss_pred ccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccce-EEEEecCCcccEEEEe-------cCCCCC
Confidence 4 23456789999999999999874 578899999999999999986 4555567788888887 566 44
Q ss_pred CeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEE
Q 001349 918 AGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTA 997 (1094)
Q Consensus 918 ~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~la 997 (1094)
+ .+++|+-|++.++||++.+.+. +.|.+|...|+++.|+|++.-++
T Consensus 200 n----------------------------tFvSg~cD~~aklWD~R~~~c~------qtF~ghesDINsv~ffP~G~afa 245 (343)
T KOG0286|consen 200 N----------------------------TFVSGGCDKSAKLWDVRSGQCV------QTFEGHESDINSVRFFPSGDAFA 245 (343)
T ss_pred C----------------------------eEEecccccceeeeeccCccee------EeecccccccceEEEccCCCeee
Confidence 4 4889999999999999999988 78889999999999999999999
Q ss_pred EEECCCCEEEEEECCCCeEEEEecC---CCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEE
Q 001349 998 STSLDGAAVKMWSTSNYNMVGSLPT---LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMAL 1072 (1094)
Q Consensus 998 s~s~Dg~~I~iwd~~~~~~~~~~~~---~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~ 1072 (1094)
+|+.|+ +.++||++..+.+..+.+ ..+|++++||-. ++++|..|.++.|||.-.++.+..+ .||.++|+++..
T Consensus 246 tGSDD~-tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L-~GHeNRvScl~~ 323 (343)
T KOG0286|consen 246 TGSDDA-TCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVL-AGHENRVSCLGV 323 (343)
T ss_pred ecCCCc-eeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEe-eccCCeeEEEEE
Confidence 999886 999999999998888885 467999999876 8999999999999999999999999 699999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEe
Q 001349 1073 DDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1073 Spdg~~L~sgs~DG~I~iWd 1092 (1094)
+|||..++||+.|.+++||.
T Consensus 324 s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 324 SPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCCCcEEEecchhHheeecC
Confidence 99999999999999999994
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-31 Score=265.28 Aligned_cols=266 Identities=20% Similarity=0.325 Sum_probs=224.6
Q ss_pred cCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeE
Q 001349 784 EMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVT 859 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~ 859 (1094)
++-.|+++|+|.+||+|... .+..++....+.|..+...|+ .|++++ .-.||+||+.++...++.++.+|++.|+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceE
Confidence 45689999999999999987 456677777899999999998 566555 4689999999988779999999999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCce
Q 001349 860 GLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPK 939 (1094)
Q Consensus 860 sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~ 939 (1094)
++.|..||++++|||.||++||||++. +.+...+.+..+|+++. ..|+..
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~--~~~qR~~~~~spVn~vv-------lhpnQt--------------------- 137 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRS--LSCQRNYQHNSPVNTVV-------LHPNQT--------------------- 137 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccC--cccchhccCCCCcceEE-------ecCCcc---------------------
Confidence 999999999999999999999999998 35556666667777766 444433
Q ss_pred EEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCe----
Q 001349 940 CLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN---- 1015 (1094)
Q Consensus 940 ~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~---- 1015 (1094)
.|++|..+|.|++||+.+..+.... +.....+|.++...+++.+++.+...| ...+|++-+..
T Consensus 138 -------eLis~dqsg~irvWDl~~~~c~~~l-----iPe~~~~i~sl~v~~dgsml~a~nnkG-~cyvW~l~~~~~~s~ 204 (311)
T KOG0315|consen 138 -------ELISGDQSGNIRVWDLGENSCTHEL-----IPEDDTSIQSLTVMPDGSMLAAANNKG-NCYVWRLLNHQTASE 204 (311)
T ss_pred -------eEEeecCCCcEEEEEccCCcccccc-----CCCCCcceeeEEEcCCCcEEEEecCCc-cEEEEEccCCCcccc
Confidence 4899999999999999988665422 223346899999999999999998876 99999987643
Q ss_pred --EEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCC-cEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEE
Q 001349 1016 --MVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQ-IRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQ 1089 (1094)
Q Consensus 1016 --~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~-~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~ 1089 (1094)
++..++ |.+.+..+.+||| +++++|.|.+++||+.++. +.-..+ .+|...+++.+||.||.||+||+.|++++
T Consensus 205 l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l-~gh~rWvWdc~FS~dg~YlvTassd~~~r 283 (311)
T KOG0315|consen 205 LEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVL-TGHQRWVWDCAFSADGEYLVTASSDHTAR 283 (311)
T ss_pred ceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEe-ecCCceEEeeeeccCccEEEecCCCCcee
Confidence 445555 7888999999999 9999999999999999987 555556 58999999999999999999999999999
Q ss_pred EEeCC
Q 001349 1090 AWGLS 1094 (1094)
Q Consensus 1090 iWdls 1094 (1094)
+|+++
T Consensus 284 lW~~~ 288 (311)
T KOG0315|consen 284 LWDLS 288 (311)
T ss_pred ecccc
Confidence 99974
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-32 Score=290.55 Aligned_cols=237 Identities=20% Similarity=0.320 Sum_probs=214.9
Q ss_pred cCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCC
Q 001349 811 SENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS--GEMLYSGSLDKTARVWSIGN 886 (1094)
Q Consensus 811 ~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspd--g~~LaSgs~DgtI~vWdi~~ 886 (1094)
+.+.+|..+.|+.| .|+|||.+|.++||+..+. ..+.++.+|+..|.++.|+|. +..++||+.||++++|++.+
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~--~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC--NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCc--ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 56789999999986 9999999999999999998 789999999999999999995 67999999999999999998
Q ss_pred CceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCc
Q 001349 887 EEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGT 966 (1094)
Q Consensus 887 ~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~ 966 (1094)
.. .......|...|..++ |.|+|++ |.++|.|.+=++||+.++.
T Consensus 251 e~-~l~~l~gH~~RVs~Va-------fHPsG~~----------------------------L~TasfD~tWRlWD~~tk~ 294 (459)
T KOG0272|consen 251 ET-PLQDLEGHLARVSRVA-------FHPSGKF----------------------------LGTASFDSTWRLWDLETKS 294 (459)
T ss_pred Cc-chhhhhcchhhheeee-------ecCCCce----------------------------eeecccccchhhcccccch
Confidence 53 2223334567787777 9999985 8889999999999999998
Q ss_pred eeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCC
Q 001349 967 FATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGG 1043 (1094)
Q Consensus 967 ~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg 1043 (1094)
.+ ....||...|.+++|++||.++++|+.|. .-+|||+++|.++..+. |...|.+++|+|+ .+++||.|+
T Consensus 295 El------L~QEGHs~~v~~iaf~~DGSL~~tGGlD~-~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dn 367 (459)
T KOG0272|consen 295 EL------LLQEGHSKGVFSIAFQPDGSLAATGGLDS-LGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDN 367 (459)
T ss_pred hh------HhhcccccccceeEecCCCceeeccCccc-hhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCC
Confidence 87 45679999999999999999999999996 99999999999999998 7899999999999 699999999
Q ss_pred eEEEEECCCCcEEEEecccCCcceEEEEEcC-CCCEEEEEeCCCcEEEEeC
Q 001349 1044 TVEIWDQKRQIRIETLQTGTSGKVQCMALDD-NEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1044 ~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Sp-dg~~L~sgs~DG~I~iWdl 1093 (1094)
+++|||++....+.++ .+|.+-|+.|.|+| .|.+|+|++.|++++||.-
T Consensus 368 t~kVWDLR~r~~ly~i-pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~ 417 (459)
T KOG0272|consen 368 TCKVWDLRMRSELYTI-PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWST 417 (459)
T ss_pred cEEEeeecccccceec-ccccchhhheEecccCCeEEEEcccCcceeeecC
Confidence 9999999999999999 59999999999998 7899999999999999963
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.7e-30 Score=278.73 Aligned_cols=323 Identities=19% Similarity=0.302 Sum_probs=252.0
Q ss_pred HHHHHHhhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecc---cCCCcEEEEEEeCC--EEEEEECCCeEEEE
Q 001349 766 KDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDS---SENGKVLSIACFRD--KIFSGHSDGTIKVW 838 (1094)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~---~h~~~V~~l~fspd--~LaSgs~Dg~I~vW 838 (1094)
+...+.|.++++..-+++||.++++.|.||+|.+||-+ +....+. +|.+.|.+++|+|| .++|++.|.+++||
T Consensus 183 k~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIW 262 (603)
T KOG0318|consen 183 KSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIW 262 (603)
T ss_pred eecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEE
Confidence 34556788899999999999999999999999999987 3444444 89999999999998 99999999999999
Q ss_pred ecCCCcc-----------------------------------------eeEEEecccCCCeEEEEEecCCCEEEEEeCCC
Q 001349 839 TGRGSIL-----------------------------------------HLIQQIREHTKAVTGLAILQSGEMLYSGSLDK 877 (1094)
Q Consensus 839 d~~t~~~-----------------------------------------~~~~~l~~H~~~V~sv~fspdg~~LaSgs~Dg 877 (1094)
|+.++.. ..++.+.||.+.|+++..+||+++|+||+.||
T Consensus 263 dVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG 342 (603)
T KOG0318|consen 263 DVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDG 342 (603)
T ss_pred EeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCc
Confidence 9987621 11233368999999999999999999999999
Q ss_pred cEEEEECCCCceEEEEecccCccceeeeecC-----------------------------------ceEEEeeCCCeEEE
Q 001349 878 TARVWSIGNEEIHCVQVHDIKDQIQNLAVSN-----------------------------------SILCFIPQGAGIKV 922 (1094)
Q Consensus 878 tI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~-----------------------------------~~~~fspdg~~l~~ 922 (1094)
.|.-|+..+|..-.+....|...|..++... ..++..++|...++
T Consensus 343 ~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv 422 (603)
T KOG0318|consen 343 HINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVV 422 (603)
T ss_pred eEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEE
Confidence 9999999887633333333344444433221 12333444444444
Q ss_pred EEeCCeEEEEcC--------CCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC
Q 001349 923 HLRNGKTKLLNS--------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG 992 (1094)
Q Consensus 923 ~~~~g~i~l~~~--------~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~ 992 (1094)
...++.+.+-+. .-...++++++ ..+++|+.||.|++|.+..+..... .....|..+|++++|+||
T Consensus 423 ~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee----~~~~~h~a~iT~vaySpd 498 (603)
T KOG0318|consen 423 ACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEE----AKLLEHRAAITDVAYSPD 498 (603)
T ss_pred EecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccce----eeeecccCCceEEEECCC
Confidence 333333322222 22456777776 4599999999999999987664322 356779999999999999
Q ss_pred ccEEEEEECCCCEEEEEECCCCeEEEEe-c-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceE
Q 001349 993 LVYTASTSLDGAAVKMWSTSNYNMVGSL-P-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQ 1068 (1094)
Q Consensus 993 ~~~las~s~Dg~~I~iwd~~~~~~~~~~-~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~ 1068 (1094)
+.|++++...+ .+.+||+.+.+..... . |...|.+++|+|+ ++++|+-|..|.||++........++..|...|+
T Consensus 499 ~~yla~~Da~r-kvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn 577 (603)
T KOG0318|consen 499 GAYLAAGDASR-KVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVN 577 (603)
T ss_pred CcEEEEeccCC-cEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCce
Confidence 99999998875 9999999987763322 2 8899999999999 8999999999999999987766777789999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1069 CMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1069 ~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
.+.|- |...+++.+.|..|++|+++
T Consensus 578 ~v~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 578 SVAWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred eEEEe-cCceEEeccCcceeEEeccc
Confidence 99996 56789999999999999974
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=293.54 Aligned_cols=320 Identities=19% Similarity=0.245 Sum_probs=258.5
Q ss_pred hhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC----EEEEEECCCeEEEEecCCCcc
Q 001349 772 LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD----KIFSGHSDGTIKVWTGRGSIL 845 (1094)
Q Consensus 772 ~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd----~LaSgs~Dg~I~vWd~~t~~~ 845 (1094)
|...+-...+.+.+..+++||.||.++|||+. .+.+.+.||.|.|.++.|+|+ .|++|..|++|++||+.+..
T Consensus 104 He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~- 182 (775)
T KOG0319|consen 104 HEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKR- 182 (775)
T ss_pred cCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCc-
Confidence 44444456677778899999999999999998 678899999999999999996 78999999999999999764
Q ss_pred eeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc-eE-----------------------EEEec------
Q 001349 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE-IH-----------------------CVQVH------ 895 (1094)
Q Consensus 846 ~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~-~~-----------------------~~~~~------ 895 (1094)
.++.++..|.+.|++++|++|+..++++|+|..+.|||+.+.+ .+ .+.+.
T Consensus 183 tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~ 262 (775)
T KOG0319|consen 183 TCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVV 262 (775)
T ss_pred hHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceE
Confidence 3788899999999999999999999999999999999983321 00 00000
Q ss_pred ----------------------------------------------------------ccCccceeeeecCc--------
Q 001349 896 ----------------------------------------------------------DIKDQIQNLAVSNS-------- 909 (1094)
Q Consensus 896 ----------------------------------------------------------~~~~~V~~v~~~~~-------- 909 (1094)
...+.|.++.+-++
T Consensus 263 ~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVA 342 (775)
T KOG0319|consen 263 QYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVA 342 (775)
T ss_pred EEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEE
Confidence 00011111111110
Q ss_pred ---------------------------eEEEeeCCCeEEEEEeCCeEEEEc----------------CCCCceEEEEeC-
Q 001349 910 ---------------------------ILCFIPQGAGIKVHLRNGKTKLLN----------------SSKYPKCLALVQ- 945 (1094)
Q Consensus 910 ---------------------------~~~fspdg~~l~~~~~~g~i~l~~----------------~~~~v~~l~~s~- 945 (1094)
.+....+|-.+++++.|.++.+|. |...|.+++++.
T Consensus 343 TNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~ 422 (775)
T KOG0319|consen 343 TNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKL 422 (775)
T ss_pred eCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeeccc
Confidence 011123456788888999999994 345688888864
Q ss_pred --CEEEEEEcCCeEEEEECCCCcee---EEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEe
Q 001349 946 --GKVYCGCQDGAIQEIDLATGTFA---TIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL 1020 (1094)
Q Consensus 946 --~~l~sgs~Dg~I~iwDl~~~~~~---~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~ 1020 (1094)
..+++++.|+++++|++...+.. ..+........|...|++++++|+..+++++|.| ++.+||++.......++
T Consensus 423 ~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqD-ktaKiW~le~~~l~~vL 501 (775)
T KOG0319|consen 423 GASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQD-KTAKIWDLEQLRLLGVL 501 (775)
T ss_pred CccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccc-cceeeecccCceEEEEe
Confidence 45999999999999999863221 1222223456799999999999999999999999 59999999999999999
Q ss_pred c-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1021 P-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1021 ~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
. |...++++.|++. .++++|.|++|+||.+.++.++++| .||...|..+.|-.+|+.|++++.||-|++|++.
T Consensus 502 sGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~-eGH~~aVlra~F~~~~~qliS~~adGliKlWnik 577 (775)
T KOG0319|consen 502 SGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTF-EGHTSAVLRASFIRNGKQLISAGADGLIKLWNIK 577 (775)
T ss_pred eCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeee-cCccceeEeeeeeeCCcEEEeccCCCcEEEEecc
Confidence 9 7788999999998 8999999999999999999999999 6999999999999999999999999999999974
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=272.73 Aligned_cols=283 Identities=20% Similarity=0.312 Sum_probs=244.8
Q ss_pred HHHHHHHHhhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEe
Q 001349 764 HMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWT 839 (1094)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd 839 (1094)
.+..++.+|...++..++.+...+|++|+.|++|+|||+. ....++.||-..|..+++|+. ++++++.|+.|+.||
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 3456778899999999999999999999999999999998 566788899999999999985 999999999999999
Q ss_pred cCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCe
Q 001349 840 GRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAG 919 (1094)
Q Consensus 840 ~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~ 919 (1094)
+..+ +.++.+.||-..|.+++.+|.-+.|+||+.|.++||||+++.. .......|..+|.++. +.|.
T Consensus 222 Le~n--kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-~V~~l~GH~~~V~~V~-------~~~~--- 288 (460)
T KOG0285|consen 222 LEYN--KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLSGHTNPVASVM-------CQPT--- 288 (460)
T ss_pred chhh--hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-eEEEecCCCCcceeEE-------eecC---
Confidence 9999 7899999999999999999999999999999999999999953 2333334555665554 2221
Q ss_pred EEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEE
Q 001349 920 IKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAST 999 (1094)
Q Consensus 920 l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~ 999 (1094)
+.++++|+.|++|++||++.|+.. ..+..|...|.+++.+|....++++
T Consensus 289 -------------------------dpqvit~S~D~tvrlWDl~agkt~------~tlt~hkksvral~lhP~e~~fASa 337 (460)
T KOG0285|consen 289 -------------------------DPQVITGSHDSTVRLWDLRAGKTM------ITLTHHKKSVRALCLHPKENLFASA 337 (460)
T ss_pred -------------------------CCceEEecCCceEEEeeeccCcee------EeeecccceeeEEecCCchhhhhcc
Confidence 346999999999999999999987 5667788999999999999999999
Q ss_pred ECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEec----cc---CCcceEEE
Q 001349 1000 SLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQ----TG---TSGKVQCM 1070 (1094)
Q Consensus 1000 s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~----~~---h~~~I~~l 1070 (1094)
+.| .|+-|++..|..+..+. |...+++++...| ++++|+++|.+.+||.++|...+.++ .| ....|.+.
T Consensus 338 s~d--nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as 415 (460)
T KOG0285|consen 338 SPD--NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFAS 415 (460)
T ss_pred CCc--cceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEE
Confidence 988 49999999999998887 6788999999888 89999999999999999987655542 11 23468999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEe
Q 001349 1071 ALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1071 ~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
+|...|..|+||..|.+|++|.
T Consensus 416 ~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 416 CFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred eecccCceEEeccCCcceEEEe
Confidence 9999999999999999999995
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-32 Score=280.88 Aligned_cols=266 Identities=21% Similarity=0.354 Sum_probs=228.4
Q ss_pred ccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEeccc
Q 001349 777 KYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREH 854 (1094)
Q Consensus 777 ~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H 854 (1094)
..-.++.|..++++|..|++|+|||.. .+...+.||+|.|.|+.|....+++|+.|.+|+|||++++ .++.++-+|
T Consensus 199 gVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tg--e~l~tlihH 276 (499)
T KOG0281|consen 199 GVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTG--EPLNTLIHH 276 (499)
T ss_pred ceEEEEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCC--chhhHHhhh
Confidence 355678899999999999999999998 6788999999999999999999999999999999999999 899999999
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC
Q 001349 855 TKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS 934 (1094)
Q Consensus 855 ~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~ 934 (1094)
...|..+.|+ ..+++|+|.|.+|.|||+.... .+.... .+..|
T Consensus 277 ceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps-----------~it~rr------------------------VLvGH 319 (499)
T KOG0281|consen 277 CEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPT-----------DITLRR------------------------VLVGH 319 (499)
T ss_pred cceeEEEEEe--CCEEEEecCCceeEEEeccCch-----------HHHHHH------------------------HHhhh
Confidence 9999999997 4699999999999999998742 111110 01123
Q ss_pred CCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCC
Q 001349 935 SKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY 1014 (1094)
Q Consensus 935 ~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~ 1014 (1094)
...|+.+.|++..+++++.|.+|++|++.+++.+ +++.+|...|-|+.+ .+.++++|+.|. +|++||+..|
T Consensus 320 rAaVNvVdfd~kyIVsASgDRTikvW~~st~efv------Rtl~gHkRGIAClQY--r~rlvVSGSSDn-tIRlwdi~~G 390 (499)
T KOG0281|consen 320 RAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFV------RTLNGHKRGIACLQY--RDRLVVSGSSDN-TIRLWDIECG 390 (499)
T ss_pred hhheeeeccccceEEEecCCceEEEEeccceeee------hhhhcccccceehhc--cCeEEEecCCCc-eEEEEecccc
Confidence 4456667777778999999999999999999998 778889888888876 467899999996 9999999999
Q ss_pred eEEEEec-CCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCc---------EEEEecccCCcceEEEEEcCCCCEEEEEeC
Q 001349 1015 NMVGSLP-TLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQI---------RIETLQTGTSGKVQCMALDDNEEFLVIGTS 1084 (1094)
Q Consensus 1015 ~~~~~~~-~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~---------~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~ 1084 (1094)
.+++.+. |..-|.++.|+...+++|..||+|+|||+.++. ++.++ ..|.+.|..+.|. ...+++++.
T Consensus 391 ~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~l-v~hsgRVFrLQFD--~fqIvsssH 467 (499)
T KOG0281|consen 391 ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTL-VEHSGRVFRLQFD--EFQIISSSH 467 (499)
T ss_pred HHHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCCcccccchHHHhh-hhccceeEEEeec--ceEEEeccC
Confidence 9999998 667799999999999999999999999988754 23344 4689999999994 677999999
Q ss_pred CCcEEEEeC
Q 001349 1085 DGRIQAWGL 1093 (1094)
Q Consensus 1085 DG~I~iWdl 1093 (1094)
|.+|.|||+
T Consensus 468 ddtILiWdF 476 (499)
T KOG0281|consen 468 DDTILIWDF 476 (499)
T ss_pred CCeEEEEEc
Confidence 999999997
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-31 Score=281.27 Aligned_cols=270 Identities=17% Similarity=0.263 Sum_probs=234.2
Q ss_pred ccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEE
Q 001349 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQ 850 (1094)
Q Consensus 775 ~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~ 850 (1094)
-+...-+.++|++|++|+..|.+.+|+-. ....+++.|..+|+++.|+++ +++||+.+|.|++|+..-. .++.
T Consensus 98 ~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn---nVk~ 174 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN---NVKI 174 (464)
T ss_pred ceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh---hhHH
Confidence 34456688899999999999999999987 345677899999999999986 9999999999999998765 4555
Q ss_pred ecccC-CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeE
Q 001349 851 IREHT-KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKT 929 (1094)
Q Consensus 851 l~~H~-~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i 929 (1094)
+++|. ..|.+++|+|+...++|+|+||+|+|||....+...+. ..|.-.
T Consensus 175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL-~GHgwd----------------------------- 224 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL-RGHGWD----------------------------- 224 (464)
T ss_pred hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee-ccCCCC-----------------------------
Confidence 66665 89999999999999999999999999999875421111 222333
Q ss_pred EEEcCCCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEE
Q 001349 930 KLLNSSKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVK 1007 (1094)
Q Consensus 930 ~l~~~~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~ 1007 (1094)
|+|+.|++ +.|++|+.|..|++||.++|.++ .++.+|...|..+.|++++.+++++|.|. .++
T Consensus 225 --------VksvdWHP~kgLiasgskDnlVKlWDprSg~cl------~tlh~HKntVl~~~f~~n~N~Llt~skD~-~~k 289 (464)
T KOG0284|consen 225 --------VKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCL------ATLHGHKNTVLAVKFNPNGNWLLTGSKDQ-SCK 289 (464)
T ss_pred --------cceeccCCccceeEEccCCceeEeecCCCcchh------hhhhhccceEEEEEEcCCCCeeEEccCCc-eEE
Confidence 44445544 45999999999999999999998 67788999999999999999999999995 999
Q ss_pred EEECCCCeEEEEec-CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEe
Q 001349 1008 MWSTSNYNMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGT 1083 (1094)
Q Consensus 1008 iwd~~~~~~~~~~~-~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs 1083 (1094)
++|+++.+.++++. |...++++.|+|- ++.+|+.||.|..|.+...+++..+..+|.+.|++++|+|-|.+|++|+
T Consensus 290 v~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgs 369 (464)
T KOG0284|consen 290 VFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGS 369 (464)
T ss_pred EEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecC
Confidence 99999888888888 8899999999985 8999999999999999988888889889999999999999999999999
Q ss_pred CCCcEEEEe
Q 001349 1084 SDGRIQAWG 1092 (1094)
Q Consensus 1084 ~DG~I~iWd 1092 (1094)
.|.++++|.
T Consensus 370 nd~t~rfw~ 378 (464)
T KOG0284|consen 370 NDRTVRFWT 378 (464)
T ss_pred CCcceeeec
Confidence 999999995
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-29 Score=258.23 Aligned_cols=277 Identities=22% Similarity=0.316 Sum_probs=233.0
Q ss_pred HHhhhccccccccccCcEEEEeeCCCCeEEEeCC---cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCc
Q 001349 770 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI 844 (1094)
Q Consensus 770 ~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~---~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~ 844 (1094)
.+|...+....|.|+|..+++||.|..|.+|+.. +-..++.+|.+.|..+.|.+| .+++++.|.+|+.||+.+|
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG- 122 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETG- 122 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccc-
Confidence 5566677778888999999999999999999965 345667899999999999987 9999999999999999999
Q ss_pred ceeEEEecccCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEE
Q 001349 845 LHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVH 923 (1094)
Q Consensus 845 ~~~~~~l~~H~~~V~sv~fspd-g~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~ 923 (1094)
++++.+++|.+.|+++.-+.- ..++.||+.||++++||+++. ..++....+-+++++. |..++
T Consensus 123 -~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k--~~~~t~~~kyqltAv~-------f~d~s------ 186 (338)
T KOG0265|consen 123 -KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK--EAIKTFENKYQLTAVG-------FKDTS------ 186 (338)
T ss_pred -eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeeccc--chhhccccceeEEEEE-------ecccc------
Confidence 899999999999999985443 457788999999999999975 3344443344445544 43333
Q ss_pred EeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC
Q 001349 924 LRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG 1003 (1094)
Q Consensus 924 ~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg 1003 (1094)
+.+++|+-|+.|++||++.+... ..+.||.++|+.+..++++.++.+-+.|.
T Consensus 187 ----------------------~qv~sggIdn~ikvWd~r~~d~~------~~lsGh~DtIt~lsls~~gs~llsnsMd~ 238 (338)
T KOG0265|consen 187 ----------------------DQVISGGIDNDIKVWDLRKNDGL------YTLSGHADTITGLSLSRYGSFLLSNSMDN 238 (338)
T ss_pred ----------------------cceeeccccCceeeeccccCcce------EEeecccCceeeEEeccCCCccccccccc
Confidence 35889999999999999998887 56788999999999999999999999996
Q ss_pred CEEEEEECCCC----eEEEEec---C--CCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEE
Q 001349 1004 AAVKMWSTSNY----NMVGSLP---T--LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMAL 1072 (1094)
Q Consensus 1004 ~~I~iwd~~~~----~~~~~~~---~--~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~ 1072 (1094)
++++||++.. .++..+. | .......+|+|+ ++-+|+.|..+++||..+...+..+ .||.+.|.+++|
T Consensus 239 -tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl-pGh~gsvn~~~F 316 (338)
T KOG0265|consen 239 -TVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL-PGHYGSVNEVDF 316 (338)
T ss_pred -eEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc-CCcceeEEEeee
Confidence 9999999853 4466665 2 244567889998 7889999999999999998899999 699999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeC
Q 001349 1073 DDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1073 Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
+|...+|.+++.|.+|++=.+
T Consensus 317 hp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 317 HPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred cCCCcEEEEeccCceeEeecc
Confidence 999999999999999987443
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-29 Score=270.79 Aligned_cols=271 Identities=23% Similarity=0.338 Sum_probs=226.6
Q ss_pred ccccccccccCc-EEEEeeCCCCeEEEeCCc------ceeecc------c----CCCcEEEEEEeCC--EEEEEECCCeE
Q 001349 775 LRKYSPLAFEMV-KVLSNGHDSSADFWNHRE------LVHVDS------S----ENGKVLSIACFRD--KIFSGHSDGTI 835 (1094)
Q Consensus 775 ~~~~~~~~~d~~-~l~s~s~dg~I~vWd~~~------~~~~~~------~----h~~~V~~l~fspd--~LaSgs~Dg~I 835 (1094)
-+-.+.+.|-.. .+++|+.|.+.++|++.. ....++ + .+..|++++|+.+ .||+|+.||.+
T Consensus 180 ~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~ 259 (524)
T KOG0273|consen 180 EVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEA 259 (524)
T ss_pred ceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEE
Confidence 334566666444 889999999999999863 111111 1 2468999999965 99999999999
Q ss_pred EEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEee
Q 001349 836 KVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP 915 (1094)
Q Consensus 836 ~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fsp 915 (1094)
++|+..++ .+.++..|.++|.++.|+.+|++|++++.||++.+||..+|+......+ +..+-..+. |-
T Consensus 260 riw~~~G~---l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~-~s~~~lDVd-------W~- 327 (524)
T KOG0273|consen 260 RIWNKDGN---LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEF-HSAPALDVD-------WQ- 327 (524)
T ss_pred EEEecCch---hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeee-ccCCccceE-------Ee-
Confidence 99999876 7888999999999999999999999999999999999999864332222 122212222 11
Q ss_pred CCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccE
Q 001349 916 QGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVY 995 (1094)
Q Consensus 916 dg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~ 995 (1094)
+++.+++.+.||.|+++.+....+. .++.+|.++|.++.|+|.+.+
T Consensus 328 ----------------------------~~~~F~ts~td~~i~V~kv~~~~P~------~t~~GH~g~V~alk~n~tg~L 373 (524)
T KOG0273|consen 328 ----------------------------SNDEFATSSTDGCIHVCKVGEDRPV------KTFIGHHGEVNALKWNPTGSL 373 (524)
T ss_pred ----------------------------cCceEeecCCCceEEEEEecCCCcc------eeeecccCceEEEEECCCCce
Confidence 1245899999999999999888877 678899999999999999999
Q ss_pred EEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC-----------EEEEEEcCCeEEEEECCCCcEEEEecccC
Q 001349 996 TASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE-----------LVYLGCKGGTVEIWDQKRQIRIETLQTGT 1063 (1094)
Q Consensus 996 las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd-----------~l~sgs~dg~I~vwd~~t~~~~~~l~~~h 1063 (1094)
+++++.|+ +++||+.....+...+. |...|..+.|+|+ .+++++.|++|++||+..+.++.+| ..|
T Consensus 374 LaS~SdD~-TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f-~kH 451 (524)
T KOG0273|consen 374 LASCSDDG-TLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL-MKH 451 (524)
T ss_pred EEEecCCC-eeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee-ccC
Confidence 99999987 99999998888888887 7889999999985 5999999999999999999999999 589
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1064 SGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1064 ~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
..+|.+++|||+|+++++|+.||.|.+|++
T Consensus 452 ~~pVysvafS~~g~ylAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 452 QEPVYSVAFSPNGRYLASGSLDGCVHIWST 481 (524)
T ss_pred CCceEEEEecCCCcEEEecCCCCeeEeccc
Confidence 999999999999999999999999999986
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=251.17 Aligned_cols=244 Identities=21% Similarity=0.297 Sum_probs=207.5
Q ss_pred eeecccCCCcEEEEEEeC---CEEEEEECCCeEEEEecCCCcc---eeEEEecccCCCeEEEEEecCCCEEEEEeCCCcE
Q 001349 806 VHVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWTGRGSIL---HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTA 879 (1094)
Q Consensus 806 ~~~~~~h~~~V~~l~fsp---d~LaSgs~Dg~I~vWd~~t~~~---~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI 879 (1094)
..++.+|++.|+.++..+ +.+++++.|.++.+|++..... ..++.+.||...|..+..++||++.+++|.|+++
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l 87 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL 87 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceE
Confidence 457889999999999876 4999999999999998764322 5688999999999999999999999999999999
Q ss_pred EEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEE
Q 001349 880 RVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQE 959 (1094)
Q Consensus 880 ~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~i 959 (1094)
++||+.+|+ .......|...|.+++ |++|.+ ++++|+.|.+|.+
T Consensus 88 rlWDl~~g~-~t~~f~GH~~dVlsva-------~s~dn~----------------------------qivSGSrDkTikl 131 (315)
T KOG0279|consen 88 RLWDLATGE-STRRFVGHTKDVLSVA-------FSTDNR----------------------------QIVSGSRDKTIKL 131 (315)
T ss_pred EEEEecCCc-EEEEEEecCCceEEEE-------ecCCCc----------------------------eeecCCCcceeee
Confidence 999999985 4444556677788877 777776 4899999999999
Q ss_pred EECCCCceeEEeccceeecCCCCCeEEEEEeCC--ccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--
Q 001349 960 IDLATGTFATIQTGHRKLLGKANPVHALQVHNG--LVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE-- 1034 (1094)
Q Consensus 960 wDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~--~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd-- 1034 (1094)
||+..+..... .-.++.+.|+++.|+|+ ..++++++.|+ +|++||+++.+....+. |.+.++.+++|||
T Consensus 132 wnt~g~ck~t~-----~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dk-tvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs 205 (315)
T KOG0279|consen 132 WNTLGVCKYTI-----HEDSHREWVSCVRFSPNESNPIIVSASWDK-TVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS 205 (315)
T ss_pred eeecccEEEEE-----ecCCCcCcEEEEEEcCCCCCcEEEEccCCc-eEEEEccCCcchhhccccccccEEEEEECCCCC
Confidence 99876544321 11223789999999998 78999999995 99999999998888887 7889999999999
Q ss_pred EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1035 LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1035 ~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
..++|+.||.+.+||++.++.+..+ +|...|.+++|+|+.-+|+.+... .|+|||+.
T Consensus 206 lcasGgkdg~~~LwdL~~~k~lysl--~a~~~v~sl~fspnrywL~~at~~-sIkIwdl~ 262 (315)
T KOG0279|consen 206 LCASGGKDGEAMLWDLNEGKNLYSL--EAFDIVNSLCFSPNRYWLCAATAT-SIKIWDLE 262 (315)
T ss_pred EEecCCCCceEEEEEccCCceeEec--cCCCeEeeEEecCCceeEeeccCC-ceEEEecc
Confidence 7889999999999999999999988 488899999999988777766544 59999973
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-29 Score=266.87 Aligned_cols=290 Identities=17% Similarity=0.244 Sum_probs=235.3
Q ss_pred chhhhHHHHHHHHHHhhhccccccccccCcEEEEeeCCCCeEEEeCC-----cceeecccCCCcEEEEEEeCC--EEEEE
Q 001349 757 GLRDINIHMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-----ELVHVDSSENGKVLSIACFRD--KIFSG 829 (1094)
Q Consensus 757 ~~~~l~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~-----~~~~~~~~h~~~V~~l~fspd--~LaSg 829 (1094)
+...+....+.++..|..-+.+..|+.+|+|+|+++.|.+..+|++. ....++.+|..+|..+.|||| +++++
T Consensus 208 ~~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaC 287 (519)
T KOG0293|consen 208 GRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLAC 287 (519)
T ss_pred CcccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEec
Confidence 33455677788888888888899999999999999999999999875 456788999999999999997 99999
Q ss_pred ECCCeEEEEecCCCcceeEEEec-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecC
Q 001349 830 HSDGTIKVWTGRGSILHLIQQIR-EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSN 908 (1094)
Q Consensus 830 s~Dg~I~vWd~~t~~~~~~~~l~-~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~ 908 (1094)
+.|..+++||+.+| .+...+. +|...+.+++|.|||..+++|+.|++|..||++......-.... ...|.+++
T Consensus 288 g~~e~~~lwDv~tg--d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr-~~~v~dla--- 361 (519)
T KOG0293|consen 288 GFDEVLSLWDVDTG--DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVR-DPKVHDLA--- 361 (519)
T ss_pred CchHheeeccCCcc--hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccc-cceeEEEE---
Confidence 99999999999999 4554443 35688999999999999999999999999999986422222111 13355555
Q ss_pred ceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEE
Q 001349 909 SILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQ 988 (1094)
Q Consensus 909 ~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~ 988 (1094)
+++||++ +++.+.|..|++|+..+..... +.....+|+++.
T Consensus 362 ----it~Dgk~----------------------------vl~v~~d~~i~l~~~e~~~dr~-------lise~~~its~~ 402 (519)
T KOG0293|consen 362 ----ITYDGKY----------------------------VLLVTVDKKIRLYNREARVDRG-------LISEEQPITSFS 402 (519)
T ss_pred ----EcCCCcE----------------------------EEEEecccceeeechhhhhhhc-------cccccCceeEEE
Confidence 7777775 5666789999999987765531 223346899999
Q ss_pred EeCCccEEEEEECCCCEEEEEECCCCeEEEEecCC---CCEEEEEEeC---CEEEEEEcCCeEEEEECCCCcEEEEeccc
Q 001349 989 VHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTL---SEVRAMVVSS---ELVYLGCKGGTVEIWDQKRQIRIETLQTG 1062 (1094)
Q Consensus 989 fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~---~~v~~l~~sp---d~l~sgs~dg~I~vwd~~t~~~~~~l~~~ 1062 (1094)
.+.++.++...-.+. .+++||+.....++.+.++ ..+-.-+|-. +++++||+|+.|+||+..+|+++..+ .|
T Consensus 403 iS~d~k~~LvnL~~q-ei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L-sG 480 (519)
T KOG0293|consen 403 ISKDGKLALVNLQDQ-EIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL-SG 480 (519)
T ss_pred EcCCCcEEEEEcccC-eeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee-cC
Confidence 999999988876664 9999999988888777632 2233334433 29999999999999999999999999 69
Q ss_pred CCcceEEEEEcCCC-CEEEEEeCCCcEEEEeC
Q 001349 1063 TSGKVQCMALDDNE-EFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1063 h~~~I~~l~~Spdg-~~L~sgs~DG~I~iWdl 1093 (1094)
|...|++++|+|.. .++|+||+||+|+||..
T Consensus 481 Hs~~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 481 HSKTVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred CcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 99999999999966 57899999999999975
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-27 Score=271.79 Aligned_cols=309 Identities=18% Similarity=0.255 Sum_probs=248.3
Q ss_pred cccccccccCcEEEEeeCCCCeEEEeCCc----------ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCC
Q 001349 776 RKYSPLAFEMVKVLSNGHDSSADFWNHRE----------LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS 843 (1094)
Q Consensus 776 ~~~~~~~~d~~~l~s~s~dg~I~vWd~~~----------~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~ 843 (1094)
.....++|+|..++.+. .+.+.||.... ...+..+|...|+++.|+.| +|++|+.|-++++|+++..
T Consensus 99 v~~i~fSPng~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~ 177 (893)
T KOG0291|consen 99 VGAIKFSPNGKFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGN 177 (893)
T ss_pred cceEEECCCCcEEEEEe-cceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccc
Confidence 34566778888877654 56889998762 23567789999999999987 9999999999999999876
Q ss_pred cceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC------------------------CCc------eEEEE
Q 001349 844 ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIG------------------------NEE------IHCVQ 893 (1094)
Q Consensus 844 ~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~------------------------~~~------~~~~~ 893 (1094)
+.-....+.+|.+.|.+.-|..+...++|.+.||.+.+|... ..+ .....
T Consensus 178 k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~ 257 (893)
T KOG0291|consen 178 KNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTK 257 (893)
T ss_pred cccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEE
Confidence 434467789999999999999999999999999999999876 111 00000
Q ss_pred ec---ccCccceeeeecCc-----------------------------------eEEEeeCCCeEEEEEeC-CeEEEEc-
Q 001349 894 VH---DIKDQIQNLAVSNS-----------------------------------ILCFIPQGAGIKVHLRN-GKTKLLN- 933 (1094)
Q Consensus 894 ~~---~~~~~V~~v~~~~~-----------------------------------~~~fspdg~~l~~~~~~-g~i~l~~- 933 (1094)
.+ .....|.+..+.+. .+.|+..|.++++++.. |.+-+|+
T Consensus 258 k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweW 337 (893)
T KOG0291|consen 258 KHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEW 337 (893)
T ss_pred eeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEe
Confidence 00 11122332222111 34456667888777766 6676765
Q ss_pred -----------CCCCceEEEEeCC--EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEE
Q 001349 934 -----------SSKYPKCLALVQG--KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS 1000 (1094)
Q Consensus 934 -----------~~~~v~~l~~s~~--~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s 1000 (1094)
|...+.+++++++ .+++|+.||.|++||..+|-+. .++..|+..|+.+.|+..+..+++.+
T Consensus 338 qsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~------vTFteHts~Vt~v~f~~~g~~llssS 411 (893)
T KOG0291|consen 338 QSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCF------VTFTEHTSGVTAVQFTARGNVLLSSS 411 (893)
T ss_pred eccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEE------EEeccCCCceEEEEEEecCCEEEEee
Confidence 3457899999975 6999999999999999999998 67778999999999999999999999
Q ss_pred CCCCEEEEEECCCCeEEEEecCCCC--EEEEEEeCC--EEEEEEcCC-eEEEEECCCCcEEEEecccCCcceEEEEEcCC
Q 001349 1001 LDGAAVKMWSTSNYNMVGSLPTLSE--VRAMVVSSE--LVYLGCKGG-TVEIWDQKRQIRIETLQTGTSGKVQCMALDDN 1075 (1094)
Q Consensus 1001 ~Dg~~I~iwd~~~~~~~~~~~~~~~--v~~l~~spd--~l~sgs~dg-~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spd 1075 (1094)
.|| +|+.||+..+...++|..+.+ ..+++.+|. .+.+|+.|. .|+||++.+|+.+..+ .||.++|.+++|+|+
T Consensus 412 LDG-tVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiL-sGHEgPVs~l~f~~~ 489 (893)
T KOG0291|consen 412 LDG-TVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDIL-SGHEGPVSGLSFSPD 489 (893)
T ss_pred cCC-eEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehh-cCCCCcceeeEEccc
Confidence 998 999999999999999986544 567777765 677777664 6999999999999999 699999999999999
Q ss_pred CCEEEEEeCCCcEEEEeC
Q 001349 1076 EEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1076 g~~L~sgs~DG~I~iWdl 1093 (1094)
|..|++||.|.+|++||+
T Consensus 490 ~~~LaS~SWDkTVRiW~i 507 (893)
T KOG0291|consen 490 GSLLASGSWDKTVRIWDI 507 (893)
T ss_pred cCeEEeccccceEEEEEe
Confidence 999999999999999996
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-29 Score=288.32 Aligned_cols=236 Identities=22% Similarity=0.351 Sum_probs=203.9
Q ss_pred CCcEEEEEEeCC--EEEEEECCCeEEEEecC-------------------------------CCcceeEEEecccCCCeE
Q 001349 813 NGKVLSIACFRD--KIFSGHSDGTIKVWTGR-------------------------------GSILHLIQQIREHTKAVT 859 (1094)
Q Consensus 813 ~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~-------------------------------t~~~~~~~~l~~H~~~V~ 859 (1094)
...++|..|++| +||.|..|..|++|.+. .+ ....++.||+++|.
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~--~~~~~L~GH~GPVy 455 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS--GTSRTLYGHSGPVY 455 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC--ceeEEeecCCCcee
Confidence 345566666665 66666666666666554 22 34456789999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCce
Q 001349 860 GLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPK 939 (1094)
Q Consensus 860 sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~ 939 (1094)
.+.|+|+.++|+++|.|++||+|.+.+.. ..+....|..||+.+. |+|-|.+
T Consensus 456 g~sFsPd~rfLlScSED~svRLWsl~t~s-~~V~y~GH~~PVwdV~-------F~P~GyY-------------------- 507 (707)
T KOG0263|consen 456 GCSFSPDRRFLLSCSEDSSVRLWSLDTWS-CLVIYKGHLAPVWDVQ-------FAPRGYY-------------------- 507 (707)
T ss_pred eeeecccccceeeccCCcceeeeecccce-eEEEecCCCcceeeEE-------ecCCceE--------------------
Confidence 99999999999999999999999999965 2333347788899888 8887764
Q ss_pred EEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEE
Q 001349 940 CLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGS 1019 (1094)
Q Consensus 940 ~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~ 1019 (1094)
+++++.|++-++|......+. +.+.+|-+.|.|+.|||+..|+++||.| ++|++||+.+|..++.
T Consensus 508 --------Fatas~D~tArLWs~d~~~Pl------RifaghlsDV~cv~FHPNs~Y~aTGSsD-~tVRlWDv~~G~~VRi 572 (707)
T KOG0263|consen 508 --------FATASHDQTARLWSTDHNKPL------RIFAGHLSDVDCVSFHPNSNYVATGSSD-RTVRLWDVSTGNSVRI 572 (707)
T ss_pred --------EEecCCCceeeeeecccCCch------hhhcccccccceEEECCcccccccCCCC-ceEEEEEcCCCcEEEE
Confidence 889999999999999887776 6788999999999999999999999888 5999999999999999
Q ss_pred ec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1020 LP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1020 ~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
|. |.++|.+++|||+ ++++|+.||.|.+||+.++.++..+ .+|.+.|.++.||.||..||+||.|++|++||+.
T Consensus 573 F~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l-~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 573 FTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQL-KGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred ecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhh-hcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 99 7899999999999 8999999999999999999999999 5899999999999999999999999999999973
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-28 Score=254.99 Aligned_cols=305 Identities=17% Similarity=0.253 Sum_probs=256.4
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecc
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIRE 853 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~ 853 (1094)
...+.|+.+.++|||.|..-.+|+.. .....+.+|...|+++.|+.+ +||||+.+|.|+||+..++ .....+..
T Consensus 69 avsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg--~~~~~~~~ 146 (399)
T KOG0296|consen 69 AVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG--GEQWKLDQ 146 (399)
T ss_pred EEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccC--ceEEEeec
Confidence 45666778899999999999999997 566778899999999999997 9999999999999999999 56666655
Q ss_pred cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEc
Q 001349 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN 933 (1094)
Q Consensus 854 H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~ 933 (1094)
--+.+.-+.|+|.+..|+.|+.||.+-+|.+..+. .+.....+..++.+-. |.|+|+.++++..+|++++|+
T Consensus 147 e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~-~~kv~~Gh~~~ct~G~-------f~pdGKr~~tgy~dgti~~Wn 218 (399)
T KOG0296|consen 147 EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA-LCKVMSGHNSPCTCGE-------FIPDGKRILTGYDDGTIIVWN 218 (399)
T ss_pred ccCceEEEEecccccEEEeecCCCcEEEEECCCcc-eeeEecCCCCCccccc-------ccCCCceEEEEecCceEEEEe
Confidence 56677789999999999999999999999999853 3333344677777766 999999999999999999999
Q ss_pred CCC-------------CceEEEEe--CCEEEEEEcCCeEEEEECCCCceeEEeccc--eeecCCCCC---eEEEEEeCCc
Q 001349 934 SSK-------------YPKCLALV--QGKVYCGCQDGAIQEIDLATGTFATIQTGH--RKLLGKANP---VHALQVHNGL 993 (1094)
Q Consensus 934 ~~~-------------~v~~l~~s--~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~--~~~~~h~~~---V~sl~fs~~~ 993 (1094)
... ...++.++ +..++.|+.++.+++-+..+|+.+....+. .....+... |-++.++..-
T Consensus 219 ~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~l 298 (399)
T KOG0296|consen 219 PKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKL 298 (399)
T ss_pred cCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccccc
Confidence 743 23344443 234888999999999999999988655431 112233334 4445556677
Q ss_pred cEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEE
Q 001349 994 VYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMAL 1072 (1094)
Q Consensus 994 ~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~ 1072 (1094)
.+.|+++.|| +|.|||+...++...+.|...|..+.|-++ ++++++.+|.|+.||.++|+++.++ .||...|.++++
T Consensus 299 pL~A~G~vdG-~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y-~GH~~~Il~f~l 376 (399)
T KOG0296|consen 299 PLAACGSVDG-TIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTY-TGHQMGILDFAL 376 (399)
T ss_pred chhhcccccc-eEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEE-ecCchheeEEEE
Confidence 8899999997 999999999999889999999999999994 9999999999999999999999999 699999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCC
Q 001349 1073 DDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1073 Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
+|++++++|+|.|++.+||++.
T Consensus 377 s~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 377 SPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999863
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-27 Score=261.24 Aligned_cols=322 Identities=16% Similarity=0.240 Sum_probs=243.4
Q ss_pred HHhhhccccccccc-cCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCc
Q 001349 770 KGLRELRKYSPLAF-EMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI 844 (1094)
Q Consensus 770 ~~~~~~~~~~~~~~-d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~ 844 (1094)
.+|.+.++.+.+.+ .+-+++||+.|++|-+|+-. ........|..-|.|+.|+|| +++|.+.||+|.+||-.++
T Consensus 144 ~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg- 222 (603)
T KOG0318|consen 144 TGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG- 222 (603)
T ss_pred eccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCc-
Confidence 44555666666665 46699999999999999876 456677889999999999998 9999999999999999999
Q ss_pred ceeEEEec---ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEeccc------------CccceeeeecC-
Q 001349 845 LHLIQQIR---EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDI------------KDQIQNLAVSN- 908 (1094)
Q Consensus 845 ~~~~~~l~---~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~------------~~~V~~v~~~~- 908 (1094)
..+..+. +|.+.|.+++|+||+..++|+|.|.+++|||+.++++........ ++.+..+...+
T Consensus 223 -e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~ 301 (603)
T KOG0318|consen 223 -EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGT 301 (603)
T ss_pred -cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcE
Confidence 7788887 899999999999999999999999999999998875222111110 01111111000
Q ss_pred ----------------------ceEEEeeCCCeEEEEEeCCeEEEEcC-------------CCCceEEEEeC-CEEEEEE
Q 001349 909 ----------------------SILCFIPQGAGIKVHLRNGKTKLLNS-------------SKYPKCLALVQ-GKVYCGC 952 (1094)
Q Consensus 909 ----------------------~~~~fspdg~~l~~~~~~g~i~l~~~-------------~~~v~~l~~s~-~~l~sgs 952 (1094)
..+..+|+++++..++.||.+.-|+. ...|.+++... +.+++.+
T Consensus 302 in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g 381 (603)
T KOG0318|consen 302 INYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIG 381 (603)
T ss_pred EEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEe
Confidence 02336777777788888888877763 34566777666 6777888
Q ss_pred cCCeEEEEECCCCceeE--------------Eecc-----------ceeecC--------CCCCeEEEEEeCCccEEEEE
Q 001349 953 QDGAIQEIDLATGTFAT--------------IQTG-----------HRKLLG--------KANPVHALQVHNGLVYTAST 999 (1094)
Q Consensus 953 ~Dg~I~iwDl~~~~~~~--------------~~~~-----------~~~~~~--------h~~~V~sl~fs~~~~~las~ 999 (1094)
.|.++++.++..+.... ...+ ...+.. -.....+++++|++..++.|
T Consensus 382 ~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVG 461 (603)
T KOG0318|consen 382 WDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVG 461 (603)
T ss_pred cCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEe
Confidence 88888777663221100 0000 000111 12346688999999999999
Q ss_pred ECCCCEEEEEECCCCeEE---EEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcC
Q 001349 1000 SLDGAAVKMWSTSNYNMV---GSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDD 1074 (1094)
Q Consensus 1000 s~Dg~~I~iwd~~~~~~~---~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Sp 1074 (1094)
+.|+ .|+||.+...... ....|...|+.+++||| +|++|...+.+.+||+.+.+.......-|...|.+++|+|
T Consensus 462 G~Dg-kvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP 540 (603)
T KOG0318|consen 462 GQDG-KVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSP 540 (603)
T ss_pred cccc-eEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCC
Confidence 9997 7999999875532 44558999999999999 8999999999999999998875544445999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCC
Q 001349 1075 NEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1075 dg~~L~sgs~DG~I~iWdls 1094 (1094)
+..+++||+-|-.|.||++.
T Consensus 541 ~n~~vATGSlDt~Viiysv~ 560 (603)
T KOG0318|consen 541 NNKLVATGSLDTNVIIYSVK 560 (603)
T ss_pred CceEEEeccccceEEEEEcc
Confidence 99999999999999999874
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-28 Score=249.04 Aligned_cols=247 Identities=17% Similarity=0.285 Sum_probs=213.1
Q ss_pred eeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 001349 806 VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWS 883 (1094)
Q Consensus 806 ~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWd 883 (1094)
..++++|.+.|.++.|++| +|+|+|.||.+.|||.-|. ..++.+.-...+|..++|+|.|++++.|+.|+...||+
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Tt--nK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTT--NKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP 125 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccc--cceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence 3788999999999999998 9999999999999999887 56777777889999999999999999999999999999
Q ss_pred CCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC-CEEEEEEcCCeEEEEEC
Q 001349 884 IGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ-GKVYCGCQDGAIQEIDL 962 (1094)
Q Consensus 884 i~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~-~~l~sgs~Dg~I~iwDl 962 (1094)
+.+.+. +.+..+. -.+-.|.+++.|..|.+ ++|++|+.|.+..+||+
T Consensus 126 ls~~d~---------~g~~~v~-----------------------r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDi 173 (343)
T KOG0286|consen 126 LSTRDA---------EGNVRVS-----------------------RELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDI 173 (343)
T ss_pred cccccc---------cccceee-----------------------eeecCccceeEEEEEcCCCceEecCCCceEEEEEc
Confidence 986420 0000000 01223566677777754 67999999999999999
Q ss_pred CCCceeEEeccceeecCCCCCeEEEEEeC-CccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEE
Q 001349 963 ATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYL 1038 (1094)
Q Consensus 963 ~~~~~~~~~~~~~~~~~h~~~V~sl~fs~-~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~s 1038 (1094)
++|+.. ..+.||.+.|.++.++| ++..+++|+-|. ..++||++.+.++++|. |.+.|+++.|.|+ -+++
T Consensus 174 e~g~~~------~~f~GH~gDV~slsl~p~~~ntFvSg~cD~-~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afat 246 (343)
T KOG0286|consen 174 ETGQQT------QVFHGHTGDVMSLSLSPSDGNTFVSGGCDK-SAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFAT 246 (343)
T ss_pred ccceEE------EEecCCcccEEEEecCCCCCCeEEeccccc-ceeeeeccCcceeEeecccccccceEEEccCCCeeee
Confidence 999988 67789999999999999 999999999996 99999999999999999 7899999999998 7999
Q ss_pred EEcCCeEEEEECCCCcEEEEeccc-CCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1039 GCKGGTVEIWDQKRQIRIETLQTG-TSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1039 gs~dg~I~vwd~~t~~~~~~l~~~-h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
|++|++.++||++..+.+..+... -...|++++||..|++|++|..|.++.+||.
T Consensus 247 GSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 247 GSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred cCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeec
Confidence 999999999999999988888521 1238999999999999999999999999995
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-29 Score=261.59 Aligned_cols=277 Identities=21% Similarity=0.316 Sum_probs=242.0
Q ss_pred EEeCC-cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeC
Q 001349 799 FWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSL 875 (1094)
Q Consensus 799 vWd~~-~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~ 875 (1094)
.|-.. ...+.+.+|...|+.+-|+|+ .+++++.|++|++||..++ ++...++||++.|.+|.|+..|++++++|.
T Consensus 93 ~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg--~~e~~LrGHt~sv~di~~~a~Gk~l~tcSs 170 (406)
T KOG0295|consen 93 LWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETG--ELERSLRGHTDSVFDISFDASGKYLATCSS 170 (406)
T ss_pred hcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccch--hhhhhhhccccceeEEEEecCccEEEecCC
Confidence 36555 566778889999999999998 8888899999999999999 679999999999999999999999999999
Q ss_pred CCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC------------CCCceEEEE
Q 001349 876 DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS------------SKYPKCLAL 943 (1094)
Q Consensus 876 DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~------------~~~v~~l~~ 943 (1094)
|-.+++||..+....+.....+...|.++. |-|.|.+++..+.|.+++.|+. ..+|+.+..
T Consensus 171 Dl~~~LWd~~~~~~c~ks~~gh~h~vS~V~-------f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v 243 (406)
T KOG0295|consen 171 DLSAKLWDFDTFFRCIKSLIGHEHGVSSVF-------FLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRV 243 (406)
T ss_pred ccchhheeHHHHHHHHHHhcCcccceeeEE-------EEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEe
Confidence 999999999874322233345666777777 9999999999999999999984 356777877
Q ss_pred eC-CE-EEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC---------------ccEEEEEECCCCEE
Q 001349 944 VQ-GK-VYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG---------------LVYTASTSLDGAAV 1006 (1094)
Q Consensus 944 s~-~~-l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~---------------~~~las~s~Dg~~I 1006 (1094)
+. |. +++++.|.++++|-+.++.+. ..+.+|.-+|.+++|-|. +.++++++.|+ +|
T Consensus 244 ~~DGti~As~s~dqtl~vW~~~t~~~k------~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk-tI 316 (406)
T KOG0295|consen 244 NQDGTIIASCSNDQTLRVWVVATKQCK------AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK-TI 316 (406)
T ss_pred cCCeeEEEecCCCceEEEEEeccchhh------hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccc-eE
Confidence 75 33 788999999999999999776 556778889999988542 35889999996 99
Q ss_pred EEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEe
Q 001349 1007 KMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGT 1083 (1094)
Q Consensus 1007 ~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs 1083 (1094)
++||+.++.++.++. |..+|..++|+|. ||+++.+|++++|||++++++..++. .|...|++++|..+..+++||+
T Consensus 317 k~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~-ah~hfvt~lDfh~~~p~VvTGs 395 (406)
T KOG0295|consen 317 KIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE-AHEHFVTSLDFHKTAPYVVTGS 395 (406)
T ss_pred EEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC-CCcceeEEEecCCCCceEEecc
Confidence 999999999999998 7899999999987 99999999999999999999999994 9999999999999999999999
Q ss_pred CCCcEEEEe
Q 001349 1084 SDGRIQAWG 1092 (1094)
Q Consensus 1084 ~DG~I~iWd 1092 (1094)
-|.++++|.
T Consensus 396 Vdqt~KvwE 404 (406)
T KOG0295|consen 396 VDQTVKVWE 404 (406)
T ss_pred ccceeeeee
Confidence 999999996
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-28 Score=272.81 Aligned_cols=271 Identities=21% Similarity=0.335 Sum_probs=224.5
Q ss_pred ccccccCcEEEEeeCC-CCeEEEeCCc--ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecc
Q 001349 779 SPLAFEMVKVLSNGHD-SSADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIRE 853 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~d-g~I~vWd~~~--~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~ 853 (1094)
..+...|.+++.|+.. |.+-||++.. -+...++|...+++++++|| +++||+.||.|+|||...+ -|+.+|..
T Consensus 313 ~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg--fC~vTFte 390 (893)
T KOG0291|consen 313 VSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG--FCFVTFTE 390 (893)
T ss_pred EEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc--eEEEEecc
Confidence 3444559999998876 8999999984 34455789999999999998 9999999999999999999 89999999
Q ss_pred cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEc
Q 001349 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN 933 (1094)
Q Consensus 854 H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~ 933 (1094)
|+..|+.+.|+.+|+.+++.|.||+|+.||+... +....+..+.++.-.. ++..|.|..
T Consensus 391 Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY--rNfRTft~P~p~Qfsc-----vavD~sGel-------------- 449 (893)
T KOG0291|consen 391 HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY--RNFRTFTSPEPIQFSC-----VAVDPSGEL-------------- 449 (893)
T ss_pred CCCceEEEEEEecCCEEEEeecCCeEEeeeeccc--ceeeeecCCCceeeeE-----EEEcCCCCE--------------
Confidence 9999999999999999999999999999999986 4444444444433221 113444443
Q ss_pred CCCCceEEEEeCCEEEEEEcCC-eEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECC
Q 001349 934 SSKYPKCLALVQGKVYCGCQDG-AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS 1012 (1094)
Q Consensus 934 ~~~~v~~l~~s~~~l~sgs~Dg-~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~ 1012 (1094)
+..|+.|. .|.+|++.+|+.+ ..+.||.+||.+++|+|.+..++++|.|. +||+||+-
T Consensus 450 --------------V~AG~~d~F~IfvWS~qTGqll------DiLsGHEgPVs~l~f~~~~~~LaS~SWDk-TVRiW~if 508 (893)
T KOG0291|consen 450 --------------VCAGAQDSFEIFVWSVQTGQLL------DILSGHEGPVSGLSFSPDGSLLASGSWDK-TVRIWDIF 508 (893)
T ss_pred --------------EEeeccceEEEEEEEeecCeee------ehhcCCCCcceeeEEccccCeEEeccccc-eEEEEEee
Confidence 44555554 5999999999998 67789999999999999999999999995 99999986
Q ss_pred C-CeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecc-------------------cCCcceEEE
Q 001349 1013 N-YNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQT-------------------GTSGKVQCM 1070 (1094)
Q Consensus 1013 ~-~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~-------------------~h~~~I~~l 1070 (1094)
. ...+.++.....+..++|+|| -+++++-||.|.+||...+..+..+.. ......+.+
T Consensus 509 ~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti 588 (893)
T KOG0291|consen 509 SSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTI 588 (893)
T ss_pred ccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEE
Confidence 4 346677888899999999998 799999999999999987766644421 112478999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1071 ALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1071 ~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
++|+||..+++||..+.|++||+
T Consensus 589 ~ySaDG~~IlAgG~sn~iCiY~v 611 (893)
T KOG0291|consen 589 CYSADGKCILAGGESNSICIYDV 611 (893)
T ss_pred EEcCCCCEEEecCCcccEEEEEC
Confidence 99999999999999999999987
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=241.83 Aligned_cols=274 Identities=17% Similarity=0.248 Sum_probs=229.3
Q ss_pred eeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCC-CcceeEEEe-cccCCCeEEEEEecCCCEEEEEeCCCcEE
Q 001349 806 VHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRG-SILHLIQQI-REHTKAVTGLAILQSGEMLYSGSLDKTAR 880 (1094)
Q Consensus 806 ~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t-~~~~~~~~l-~~H~~~V~sv~fspdg~~LaSgs~DgtI~ 880 (1094)
.+.+.+|.+.|..++|+|. .|+|++.|..|++|+... ..+.+...+ .+|+..|.+++|+|.|++|++||.|.++.
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV 86 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence 4677899999999999996 799999999999999984 334555554 47999999999999999999999999999
Q ss_pred EEECCCCceEEEEec-ccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEc---------------CCCCceEEEEe
Q 001349 881 VWSIGNEEIHCVQVH-DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN---------------SSKYPKCLALV 944 (1094)
Q Consensus 881 vWdi~~~~~~~~~~~-~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~---------------~~~~v~~l~~s 944 (1094)
||.-..++..++... .|...|.+++ |+++|+++++.+.+..+-+|. |...|..+.|+
T Consensus 87 Iw~k~~~efecv~~lEGHEnEVK~Va-------ws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WH 159 (312)
T KOG0645|consen 87 IWKKEDGEFECVATLEGHENEVKCVA-------WSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWH 159 (312)
T ss_pred EeecCCCceeEEeeeeccccceeEEE-------EcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEc
Confidence 999998888877665 5788999998 999999999999999998886 35668888888
Q ss_pred C--CEEEEEEcCCeEEEEECC-CCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec
Q 001349 945 Q--GKVYCGCQDGAIQEIDLA-TGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP 1021 (1094)
Q Consensus 945 ~--~~l~sgs~Dg~I~iwDl~-~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~ 1021 (1094)
| +.|++++.|++|++|+-. .+..... .++.+|...|.+++|++.|..+++++.|+ +++||-..+. -...
T Consensus 160 Pt~dlL~S~SYDnTIk~~~~~~dddW~c~----~tl~g~~~TVW~~~F~~~G~rl~s~sdD~-tv~Iw~~~~~---~~~~ 231 (312)
T KOG0645|consen 160 PTEDLLFSCSYDNTIKVYRDEDDDDWECV----QTLDGHENTVWSLAFDNIGSRLVSCSDDG-TVSIWRLYTD---LSGM 231 (312)
T ss_pred CCcceeEEeccCCeEEEEeecCCCCeeEE----EEecCccceEEEEEecCCCceEEEecCCc-ceEeeeeccC---cchh
Confidence 8 779999999999999876 3332221 67889999999999999999999999886 9999986521 1122
Q ss_pred CCCCEEEEEEeCCEEEEEEcCCeEEEEECCCC------cEEEEecccCCcceEEEEEcCC-CCEEEEEeCCCcEEEEeCC
Q 001349 1022 TLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQ------IRIETLQTGTSGKVQCMALDDN-EEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1022 ~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~------~~~~~l~~~h~~~I~~l~~Spd-g~~L~sgs~DG~I~iWdls 1094 (1094)
|...+..+.|..+.|++++.|+.|++|..... +.+......|...|+++.|+|. .++|++|++||.|++|.+.
T Consensus 232 ~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 232 HSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 66788899999669999999999999976542 2333334568889999999995 6899999999999999863
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-28 Score=281.93 Aligned_cols=259 Identities=20% Similarity=0.321 Sum_probs=213.6
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCCc---------------------------------ceeecccCCCcEEEEEEeCC
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHRE---------------------------------LVHVDSSENGKVLSIACFRD 824 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~~---------------------------------~~~~~~~h~~~V~~l~fspd 824 (1094)
...|+.|++.+|.|-.|..|++|.... ....+.||.++|..+.|+|+
T Consensus 383 ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd 462 (707)
T KOG0263|consen 383 CAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPD 462 (707)
T ss_pred eEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeeccc
Confidence 566777888999999999999997641 12347789999999999997
Q ss_pred --EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccce
Q 001349 825 --KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQ 902 (1094)
Q Consensus 825 --~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~ 902 (1094)
+|+++|.|++||+|.+.+. .++..++||..+||.+.|+|.|-++||+|.|++.++|..+......+. ..|-+.|.
T Consensus 463 ~rfLlScSED~svRLWsl~t~--s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRif-aghlsDV~ 539 (707)
T KOG0263|consen 463 RRFLLSCSEDSSVRLWSLDTW--SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIF-AGHLSDVD 539 (707)
T ss_pred ccceeeccCCcceeeeecccc--eeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhh-cccccccc
Confidence 9999999999999999998 788999999999999999999999999999999999999875321111 12344455
Q ss_pred eeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCC
Q 001349 903 NLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKAN 982 (1094)
Q Consensus 903 ~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~ 982 (1094)
++. |.|++. .+++|+.|.+|++||+.+|..+ +.|.||.+
T Consensus 540 cv~-------FHPNs~----------------------------Y~aTGSsD~tVRlWDv~~G~~V------RiF~GH~~ 578 (707)
T KOG0263|consen 540 CVS-------FHPNSN----------------------------YVATGSSDRTVRLWDVSTGNSV------RIFTGHKG 578 (707)
T ss_pred eEE-------ECCccc----------------------------ccccCCCCceEEEEEcCCCcEE------EEecCCCC
Confidence 544 555555 3899999999999999999998 67788999
Q ss_pred CeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCc-----
Q 001349 983 PVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI----- 1054 (1094)
Q Consensus 983 ~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~----- 1054 (1094)
+|++++|+|+|.++++|+.|| .|++||+.+++.+..+. |.+.|.++.|+.| .+++|+.|++|++||+....
T Consensus 579 ~V~al~~Sp~Gr~LaSg~ed~-~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~ 657 (707)
T KOG0263|consen 579 PVTALAFSPCGRYLASGDEDG-LIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNL 657 (707)
T ss_pred ceEEEEEcCCCceEeecccCC-cEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccc
Confidence 999999999999999999997 99999999999998887 7889999999998 89999999999999975422
Q ss_pred -------------------EEEEecccCCcceEEEEEcCCCCEEEEE
Q 001349 1055 -------------------RIETLQTGTSGKVQCMALDDNEEFLVIG 1082 (1094)
Q Consensus 1055 -------------------~~~~l~~~h~~~I~~l~~Spdg~~L~sg 1082 (1094)
++.++. ....+|.++.|....-.|++|
T Consensus 658 ~~~~~~~~~~~~~~~~~~~llgs~~-tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 658 GHISTSNSAITQENNASSLLLGSFY-TKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred cccccccccccccCCCCcceeeeee-ecCceEEEEEEeccceeEEec
Confidence 233332 233478888887655444444
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-30 Score=265.26 Aligned_cols=232 Identities=28% Similarity=0.465 Sum_probs=202.4
Q ss_pred CCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEE
Q 001349 812 ENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHC 891 (1094)
Q Consensus 812 h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~ 891 (1094)
....|+|+.|..+.+++|..|.+|+|||.++. .+++.+.||++.|.|+.| +.+.+++||.|.||+|||+++|+.
T Consensus 196 ~skgVYClQYDD~kiVSGlrDnTikiWD~n~~--~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~-- 269 (499)
T KOG0281|consen 196 NSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSL--ECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEP-- 269 (499)
T ss_pred cCCceEEEEecchhhhcccccCceEEeccccH--HHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCch--
Confidence 45789999999999999999999999999988 789999999999999998 457999999999999999999852
Q ss_pred EEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEe
Q 001349 892 VQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQ 971 (1094)
Q Consensus 892 ~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~ 971 (1094)
+.+ ++.|...|..+.|++|.+++++.|.+|.+||+.....+
T Consensus 270 l~t------------------------------------lihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~i--- 310 (499)
T KOG0281|consen 270 LNT------------------------------------LIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDI--- 310 (499)
T ss_pred hhH------------------------------------HhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHH---
Confidence 111 12234455667778889999999999999999876633
Q ss_pred ccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCCEEEEEEcCCeEEEEEC
Q 001349 972 TGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSELVYLGCKGGTVEIWDQ 1050 (1094)
Q Consensus 972 ~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd~l~sgs~dg~I~vwd~ 1050 (1094)
...+.+.||...|+.+.|+.. |+++++.| ++|++|++.++..++++. |...|.|+.+...++++||.|++|++||+
T Consensus 311 t~rrVLvGHrAaVNvVdfd~k--yIVsASgD-RTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi 387 (499)
T KOG0281|consen 311 TLRRVLVGHRAAVNVVDFDDK--YIVSASGD-RTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI 387 (499)
T ss_pred HHHHHHhhhhhheeeeccccc--eEEEecCC-ceEEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEec
Confidence 222567899999999999765 88888878 599999999999999998 67889999999889999999999999999
Q ss_pred CCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1051 KRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1051 ~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
..|.++..+ .||..-|.++.|. .+.+++|+.||+|+|||+.
T Consensus 388 ~~G~cLRvL-eGHEeLvRciRFd--~krIVSGaYDGkikvWdl~ 428 (499)
T KOG0281|consen 388 ECGACLRVL-EGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQ 428 (499)
T ss_pred cccHHHHHH-hchHHhhhheeec--CceeeeccccceEEEEecc
Confidence 999999999 5999999999994 7889999999999999974
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-27 Score=300.39 Aligned_cols=275 Identities=18% Similarity=0.261 Sum_probs=216.8
Q ss_pred hhccccccccccCcEEEEeeCCCCeEEEeCCcce---------eecccCCCcEEEEEEeC---CEEEEEECCCeEEEEec
Q 001349 773 RELRKYSPLAFEMVKVLSNGHDSSADFWNHRELV---------HVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWTG 840 (1094)
Q Consensus 773 ~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~~---------~~~~~h~~~V~~l~fsp---d~LaSgs~Dg~I~vWd~ 840 (1094)
...+....|.+++.++++|+.|++|+||+..... .....+...|.+++|++ .+|++++.||+|++||+
T Consensus 483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~ 562 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDV 562 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEEC
Confidence 3344556778899999999999999999975210 11123457899999986 39999999999999999
Q ss_pred CCCcceeEEEecccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEee-CCC
Q 001349 841 RGSILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP-QGA 918 (1094)
Q Consensus 841 ~t~~~~~~~~l~~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fsp-dg~ 918 (1094)
.++ ..+..+.+|.+.|++++|+| ++.+|+||+.||+|++||++++.. .........+.++. |.+ +|.
T Consensus 563 ~~~--~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~--~~~~~~~~~v~~v~-------~~~~~g~ 631 (793)
T PLN00181 563 ARS--QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS--IGTIKTKANICCVQ-------FPSESGR 631 (793)
T ss_pred CCC--eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE--EEEEecCCCeEEEE-------EeCCCCC
Confidence 988 78889999999999999997 789999999999999999988642 22222223444443 322 232
Q ss_pred eEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEE
Q 001349 919 GIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAS 998 (1094)
Q Consensus 919 ~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las 998 (1094)
.+++|+.||.|++||++++.... ..+.+|...|+++.|. ++.++++
T Consensus 632 ----------------------------~latgs~dg~I~iwD~~~~~~~~-----~~~~~h~~~V~~v~f~-~~~~lvs 677 (793)
T PLN00181 632 ----------------------------SLAFGSADHKVYYYDLRNPKLPL-----CTMIGHSKTVSYVRFV-DSSTLVS 677 (793)
T ss_pred ----------------------------EEEEEeCCCeEEEEECCCCCccc-----eEecCCCCCEEEEEEe-CCCEEEE
Confidence 48899999999999998765321 4567899999999997 5667889
Q ss_pred EECCCCEEEEEECCC------CeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEec---------
Q 001349 999 TSLDGAAVKMWSTSN------YNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQ--------- 1060 (1094)
Q Consensus 999 ~s~Dg~~I~iwd~~~------~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~--------- 1060 (1094)
++.|+ +|++||++. +.++..+. |...+..++|+++ ++++|+.||.|++|+...+.++..+.
T Consensus 678 ~s~D~-~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~ 756 (793)
T PLN00181 678 SSTDN-TLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSG 756 (793)
T ss_pred EECCC-EEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccc
Confidence 99886 999999974 35667776 5677889999987 99999999999999987665443321
Q ss_pred ---ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1061 ---TGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1061 ---~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
..|...|.+++|+|++..|++|+.||+|+||++
T Consensus 757 ~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 757 LEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred cccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 234557999999999999999999999999996
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-27 Score=257.08 Aligned_cols=277 Identities=27% Similarity=0.448 Sum_probs=231.4
Q ss_pred HHhhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcc
Q 001349 770 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSIL 845 (1094)
Q Consensus 770 ~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~ 845 (1094)
+.|...+....+.+++.++++++.||.|++|+.. ........|...+..+.|+++ .+++++.||.|++||+.++
T Consensus 6 ~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~-- 83 (289)
T cd00200 6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG-- 83 (289)
T ss_pred cccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc--
Confidence 3455556667778888999999999999999987 345667789999999999986 8999999999999999987
Q ss_pred eeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEe
Q 001349 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR 925 (1094)
Q Consensus 846 ~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~ 925 (1094)
..+..+..|...|.++.|+++++++++++.||.|++||+.+++... ....+...+.++. |+|++.
T Consensus 84 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~i~~~~-------~~~~~~------- 148 (289)
T cd00200 84 ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT-TLRGHTDWVNSVA-------FSPDGT------- 148 (289)
T ss_pred cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE-EeccCCCcEEEEE-------EcCcCC-------
Confidence 6777888999999999999999999999889999999998754211 1123444555555 555443
Q ss_pred CCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCE
Q 001349 926 NGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAA 1005 (1094)
Q Consensus 926 ~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~ 1005 (1094)
.+++++.||.|++||+++++.. ..+..|...+.++.|++++..+++++.++ .
T Consensus 149 ---------------------~l~~~~~~~~i~i~d~~~~~~~------~~~~~~~~~i~~~~~~~~~~~l~~~~~~~-~ 200 (289)
T cd00200 149 ---------------------FVASSSQDGTIKLWDLRTGKCV------ATLTGHTGEVNSVAFSPDGEKLLSSSSDG-T 200 (289)
T ss_pred ---------------------EEEEEcCCCcEEEEEccccccc------eeEecCccccceEEECCCcCEEEEecCCC-c
Confidence 2556666999999999988766 34557778999999999998888888776 9
Q ss_pred EEEEECCCCeEEEEe-cCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEE
Q 001349 1006 VKMWSTSNYNMVGSL-PTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIG 1082 (1094)
Q Consensus 1006 I~iwd~~~~~~~~~~-~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sg 1082 (1094)
|++||+++++.+..+ .+...+.++.|+++ ++++++.||.|++||+.+++....+. +|...|.+++|+|++++|+++
T Consensus 201 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~ 279 (289)
T cd00200 201 IKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS-GHTNSVTSLAWSPDGKRLASG 279 (289)
T ss_pred EEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc-ccCCcEEEEEECCCCCEEEEe
Confidence 999999999988888 47779999999996 67777779999999999999988885 888899999999999999999
Q ss_pred eCCCcEEEEe
Q 001349 1083 TSDGRIQAWG 1092 (1094)
Q Consensus 1083 s~DG~I~iWd 1092 (1094)
+.||.|++|+
T Consensus 280 ~~d~~i~iw~ 289 (289)
T cd00200 280 SADGTIRIWD 289 (289)
T ss_pred cCCCeEEecC
Confidence 9999999996
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=282.24 Aligned_cols=272 Identities=26% Similarity=0.436 Sum_probs=228.7
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCC--c--ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEec-CCCcceeEEE
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHR--E--LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTG-RGSILHLIQQ 850 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~--~--~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~-~t~~~~~~~~ 850 (1094)
...++++|..+++++.|+.+++|+.. . ....+.+|...|++++|+|+ ++++|+.|++|+|||+ ..+ ..+++
T Consensus 164 ~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~--~~~~~ 241 (456)
T KOG0266|consen 164 CVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG--RNLKT 241 (456)
T ss_pred EEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC--eEEEE
Confidence 46788899999999999999999985 2 44556899999999999997 9999999999999999 444 78999
Q ss_pred ecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEE
Q 001349 851 IREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK 930 (1094)
Q Consensus 851 l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~ 930 (1094)
+.+|...|++++|+|+|+++++|+.|++|+|||+++++. ......|.+.|.+++ |+++|+.
T Consensus 242 l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~-~~~l~~hs~~is~~~-------f~~d~~~----------- 302 (456)
T KOG0266|consen 242 LKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGEC-VRKLKGHSDGISGLA-------FSPDGNL----------- 302 (456)
T ss_pred ecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeE-EEeeeccCCceEEEE-------ECCCCCE-----------
Confidence 999999999999999999999999999999999999752 222334567888877 8888874
Q ss_pred EEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCC--CeEEEEEeCCccEEEEEECCCCEEEE
Q 001349 931 LLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKAN--PVHALQVHNGLVYTASTSLDGAAVKM 1008 (1094)
Q Consensus 931 l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~--~V~sl~fs~~~~~las~s~Dg~~I~i 1008 (1094)
+++++.|+.|++||+.++... ....+.++.. +++++.|+|++.++++++.|+ ++++
T Consensus 303 -----------------l~s~s~d~~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~-~~~~ 360 (456)
T KOG0266|consen 303 -----------------LVSASYDGTIRVWDLETGSKL----CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDR-TLKL 360 (456)
T ss_pred -----------------EEEcCCCccEEEEECCCCcee----eeecccCCCCCCceeEEEECCCCcEEEEecCCC-eEEE
Confidence 778889999999999999832 0033344443 599999999999999999885 9999
Q ss_pred EECCCCeEEEEec-CCCCE---EEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccC-CcceEEEEEcCCCCEEEE
Q 001349 1009 WSTSNYNMVGSLP-TLSEV---RAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGT-SGKVQCMALDDNEEFLVI 1081 (1094)
Q Consensus 1009 wd~~~~~~~~~~~-~~~~v---~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h-~~~I~~l~~Spdg~~L~s 1081 (1094)
||+..+.....+. |...+ .+...+++ ++++|+.|+.|++||..++..+..+ .+| ...+..+.|+|..+++++
T Consensus 361 w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l-~~h~~~~~~~~~~~~~~~~~~s 439 (456)
T KOG0266|consen 361 WDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL-EGHSKAAVSDLSSHPTENLIAS 439 (456)
T ss_pred EEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh-cCCCCCceeccccCCCcCeeee
Confidence 9999999888887 43333 22333444 8999999999999999999888888 588 889999999999999999
Q ss_pred Ee--CCCcEEEEeC
Q 001349 1082 GT--SDGRIQAWGL 1093 (1094)
Q Consensus 1082 gs--~DG~I~iWdl 1093 (1094)
++ .|+.|++|..
T Consensus 440 ~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 440 SSFEGDGLIRLWKY 453 (456)
T ss_pred cCcCCCceEEEecC
Confidence 98 7999999974
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.7e-28 Score=253.87 Aligned_cols=286 Identities=18% Similarity=0.285 Sum_probs=225.9
Q ss_pred cCcEEEEeeCCCCeEEEeCC-cceeecccCCCcEEEEEEeC-C----EEEEEECCCeEEEEecCCCcc--eeEEEecccC
Q 001349 784 EMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFR-D----KIFSGHSDGTIKVWTGRGSIL--HLIQQIREHT 855 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~-~~~~~~~~h~~~V~~l~fsp-d----~LaSgs~Dg~I~vWd~~t~~~--~~~~~l~~H~ 855 (1094)
-+..|++|++||++++||.. .......||.++|.+++|.. + .+++++.|.++++|.++.+.. +.+..-.||.
T Consensus 114 ~~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk 193 (423)
T KOG0313|consen 114 ASKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHK 193 (423)
T ss_pred cCceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccc
Confidence 37899999999999999998 67888999999999888863 3 699999999999998876632 2334445999
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC
Q 001349 856 KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS 935 (1094)
Q Consensus 856 ~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~ 935 (1094)
..|-+|...++|..+++||.|.+|+||+..+...........+..-... +-+. .+.....+.+-.|.
T Consensus 194 ~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~--------~~~~-----~~~r~P~vtl~GHt 260 (423)
T KOG0313|consen 194 RSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQK--------REKE-----GGTRTPLVTLEGHT 260 (423)
T ss_pred cceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhh--------hhhc-----ccccCceEEecccc
Confidence 9999999999999999999999999999443221111111000000000 0000 01122334556678
Q ss_pred CCceEEEEeC-CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCC
Q 001349 936 KYPKCLALVQ-GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY 1014 (1094)
Q Consensus 936 ~~v~~l~~s~-~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~ 1014 (1094)
..|.++.|.+ +.+++++.|++|+.||+.++........ ...++++.+++...++++++.| +.+++||.+++
T Consensus 261 ~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-------~ksl~~i~~~~~~~Ll~~gssd-r~irl~DPR~~ 332 (423)
T KOG0313|consen 261 EPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT-------NKSLNCISYSPLSKLLASGSSD-RHIRLWDPRTG 332 (423)
T ss_pred cceeeEEEcCCCceEeecccceEEEEEeecccceeeeec-------CcceeEeecccccceeeecCCC-CceeecCCCCC
Confidence 8899999986 5699999999999999999998754332 3578999999999999999998 59999999875
Q ss_pred e---EEEEec-CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCc-EEEEecccCCcceEEEEEcCCCCEEEEEeCCC
Q 001349 1015 N---MVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQI-RIETLQTGTSGKVQCMALDDNEEFLVIGTSDG 1086 (1094)
Q Consensus 1015 ~---~~~~~~-~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~-~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG 1086 (1094)
. ..+++. |...|.++.|+|. .+++|+.||++++||+++.+ ++..+ .+|.+.|.++.|+ ++..+++||.|+
T Consensus 333 ~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI-~~h~DKvl~vdW~-~~~~IvSGGaD~ 410 (423)
T KOG0313|consen 333 DGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI-AGHNDKVLSVDWN-EGGLIVSGGADN 410 (423)
T ss_pred CCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee-ccCCceEEEEecc-CCceEEeccCcc
Confidence 3 334454 7889999999997 79999999999999999887 89999 6999999999997 577999999999
Q ss_pred cEEEEe
Q 001349 1087 RIQAWG 1092 (1094)
Q Consensus 1087 ~I~iWd 1092 (1094)
+|+|+.
T Consensus 411 ~l~i~~ 416 (423)
T KOG0313|consen 411 KLRIFK 416 (423)
T ss_pred eEEEec
Confidence 999985
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-27 Score=255.06 Aligned_cols=268 Identities=19% Similarity=0.292 Sum_probs=231.2
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCC-cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEeccc
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREH 854 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~-~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H 854 (1094)
...+..+|..||+|+.||.+++|+.. ....++..|.++|.++.|+.+ +|++++.||++.+||..++ ...+.+.-|
T Consensus 240 ~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g--~~~q~f~~~ 317 (524)
T KOG0273|consen 240 SLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG--TVKQQFEFH 317 (524)
T ss_pred eEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc--eEEEeeeec
Confidence 45677789999999999999999998 677888999999999999985 9999999999999999999 677777778
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC
Q 001349 855 TKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS 934 (1094)
Q Consensus 855 ~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~ 934 (1094)
..+-..|.|-. ...+++.+.||.|+|+.+......... ..|.++|..+. |.|.|.
T Consensus 318 s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~-~GH~g~V~alk-------~n~tg~---------------- 372 (524)
T KOG0273|consen 318 SAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTF-IGHHGEVNALK-------WNPTGS---------------- 372 (524)
T ss_pred cCCccceEEec-CceEeecCCCceEEEEEecCCCcceee-ecccCceEEEE-------ECCCCc----------------
Confidence 88877888864 467899999999999999875422222 22566666666 555555
Q ss_pred CCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC---------ccEEEEEECCCCE
Q 001349 935 SKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG---------LVYTASTSLDGAA 1005 (1094)
Q Consensus 935 ~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~---------~~~las~s~Dg~~ 1005 (1094)
.|++++.|+++++|....+... ..+.+|...|+.+.|+|. +..+++++.|+ +
T Consensus 373 ------------LLaS~SdD~TlkiWs~~~~~~~------~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~ds-t 433 (524)
T KOG0273|consen 373 ------------LLASCSDDGTLKIWSMGQSNSV------HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDS-T 433 (524)
T ss_pred ------------eEEEecCCCeeEeeecCCCcch------hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCC-e
Confidence 3889999999999998888776 678899999999999875 45788888886 9
Q ss_pred EEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEE
Q 001349 1006 VKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIG 1082 (1094)
Q Consensus 1006 I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sg 1082 (1094)
|++||+..+.++.+|. |..+|.+++|+|+ ++++|+.||.|.+|+..+++.++.+. ..+.|..++|+.+|.+|..+
T Consensus 434 V~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~--~~~~Ifel~Wn~~G~kl~~~ 511 (524)
T KOG0273|consen 434 VKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ--GTGGIFELCWNAAGDKLGAC 511 (524)
T ss_pred EEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec--CCCeEEEEEEcCCCCEEEEE
Confidence 9999999999999995 9999999999998 99999999999999999999999994 44579999999999999999
Q ss_pred eCCCcEEEEeC
Q 001349 1083 TSDGRIQAWGL 1093 (1094)
Q Consensus 1083 s~DG~I~iWdl 1093 (1094)
-.||.+++-|+
T Consensus 512 ~sd~~vcvldl 522 (524)
T KOG0273|consen 512 ASDGSVCVLDL 522 (524)
T ss_pred ecCCCceEEEe
Confidence 99999999886
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=246.10 Aligned_cols=270 Identities=20% Similarity=0.326 Sum_probs=232.1
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecc
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIRE 853 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~ 853 (1094)
++++.++|-++++++.||.--+-+-+ ..+-++.+|.+.|++.+.+.| .-++++.|-+-+|||.-+| ..++.+ .
T Consensus 22 ~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tg--delhsf-~ 98 (334)
T KOG0278|consen 22 FSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTG--DELHSF-E 98 (334)
T ss_pred ccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhh--hhhhhh-h
Confidence 67888899999999999987666544 567789999999999999988 8889999999999999999 678887 4
Q ss_pred cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEc
Q 001349 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN 933 (1094)
Q Consensus 854 H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~ 933 (1094)
|..-|.+++|+.|.++|+||+.++.+||+|++..+-.......+.+.|..+. |...
T Consensus 99 hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~-------wc~e----------------- 154 (334)
T KOG0278|consen 99 HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVL-------WCHE----------------- 154 (334)
T ss_pred hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEE-------Eecc-----------------
Confidence 9999999999999999999999999999999886544444444555555554 2222
Q ss_pred CCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCC
Q 001349 934 SSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN 1013 (1094)
Q Consensus 934 ~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~ 1013 (1094)
+..|++.+.|++|++||.++++.+..+. ...+|+++.+++++.++..+ +|+.|++||..+
T Consensus 155 -----------D~~iLSSadd~tVRLWD~rTgt~v~sL~-------~~s~VtSlEvs~dG~ilTia--~gssV~Fwdaks 214 (334)
T KOG0278|consen 155 -----------DKCILSSADDKTVRLWDHRTGTEVQSLE-------FNSPVTSLEVSQDGRILTIA--YGSSVKFWDAKS 214 (334)
T ss_pred -----------CceEEeeccCCceEEEEeccCcEEEEEe-------cCCCCcceeeccCCCEEEEe--cCceeEEecccc
Confidence 2347788999999999999999875432 23689999999999988776 467999999999
Q ss_pred CeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001349 1014 YNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1014 ~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iW 1091 (1094)
...++.+.-+..|.+...+|+ .+++|++|..++.||..+|..+..+..+|.++|.|+.|+|||..-++||.||+|++|
T Consensus 215 f~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlW 294 (334)
T KOG0278|consen 215 FGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLW 294 (334)
T ss_pred ccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEE
Confidence 999999999999999999998 899999999999999999999999767999999999999999999999999999999
Q ss_pred eCC
Q 001349 1092 GLS 1094 (1094)
Q Consensus 1092 dls 1094 (1094)
.++
T Consensus 295 Qt~ 297 (334)
T KOG0278|consen 295 QTT 297 (334)
T ss_pred Eec
Confidence 863
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=238.04 Aligned_cols=272 Identities=18% Similarity=0.322 Sum_probs=224.4
Q ss_pred HhhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcce
Q 001349 771 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILH 846 (1094)
Q Consensus 771 ~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~ 846 (1094)
..+..++..-+.-||+|.++++.|.+|++|+.. .+++++.+|...|..++.+.| .+++|+.|..|.+||+.+| +
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG--k 92 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG--K 92 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccC--e
Confidence 344556677788899999999999999999987 678999999999999998875 9999999999999999999 8
Q ss_pred eEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeC
Q 001349 847 LIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRN 926 (1094)
Q Consensus 847 ~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~ 926 (1094)
.++.+.+|.+.|+.+.|+.+...+++||.|.++++||.++.....++...
T Consensus 93 v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQild------------------------------ 142 (307)
T KOG0316|consen 93 VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILD------------------------------ 142 (307)
T ss_pred eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhh------------------------------
Confidence 99999999999999999999999999999999999999986544433321
Q ss_pred CeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEE
Q 001349 927 GKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAV 1006 (1094)
Q Consensus 927 g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I 1006 (1094)
.....|.++...+..|++|+.||+++.||++.|+.... .. ..+|+++.|++++.....++.|+ ++
T Consensus 143 ------ea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sD------y~--g~pit~vs~s~d~nc~La~~l~s-tl 207 (307)
T KOG0316|consen 143 ------EAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSD------YF--GHPITSVSFSKDGNCSLASSLDS-TL 207 (307)
T ss_pred ------hhcCceeEEEecccEEEeeccCCcEEEEEeecceeehh------hc--CCcceeEEecCCCCEEEEeeccc-ee
Confidence 01233455555566799999999999999999987632 22 35899999999999999999996 99
Q ss_pred EEEECCCCeEEEEecCCCC---EEEEEEeC-C-EEEEEEcCCeEEEEECCCCcEEEEecccCCcc-eEEEEEcCCCCEEE
Q 001349 1007 KMWSTSNYNMVGSLPTLSE---VRAMVVSS-E-LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGK-VQCMALDDNEEFLV 1080 (1094)
Q Consensus 1007 ~iwd~~~~~~~~~~~~~~~---v~~l~~sp-d-~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~-I~~l~~Spdg~~L~ 1080 (1094)
++.|-.+|+.+..+.++.+ -...++.. + .+++|++||.|++||+...+.+..+. .|... |.++.++|.-..|+
T Consensus 208 rLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~-~~~~v~v~dl~~hp~~~~f~ 286 (307)
T KOG0316|consen 208 RLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLS-VVSTVIVTDLSCHPTMDDFI 286 (307)
T ss_pred eecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeec-cCCceeEEeeecccCcccee
Confidence 9999999999998884322 12233333 2 89999999999999999999999984 55555 89999999888788
Q ss_pred EEeCCCcEEEE
Q 001349 1081 IGTSDGRIQAW 1091 (1094)
Q Consensus 1081 sgs~DG~I~iW 1091 (1094)
++... .+..|
T Consensus 287 ~A~~~-~~~~~ 296 (307)
T KOG0316|consen 287 TATGH-GDLFW 296 (307)
T ss_pred EecCC-ceece
Confidence 77644 45555
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=264.20 Aligned_cols=290 Identities=21% Similarity=0.291 Sum_probs=250.8
Q ss_pred CcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeC---CEEEEEECCCeEEEEecCCCcceeEEEecccCCCeE
Q 001349 785 MVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVT 859 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fsp---d~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~ 859 (1094)
...++....|..+.++|.+ +....+.|.++.|..++|-+ ++++.++..+.+|+|+..+. .+. .+.||+..|.
T Consensus 293 ~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~--~c~-ii~GH~e~vl 369 (775)
T KOG0319|consen 293 MSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTS--YCQ-IIPGHTEAVL 369 (775)
T ss_pred cCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCC--ceE-EEeCchhhee
Confidence 4566677788899999887 45666788999999999987 49999999999999999987 333 7889999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCce---EEEEecccCccceeeeecCceEEEeeCC-CeEEEEEeCCeEEEEcC-
Q 001349 860 GLAILQSGEMLYSGSLDKTARVWSIGNEEI---HCVQVHDIKDQIQNLAVSNSILCFIPQG-AGIKVHLRNGKTKLLNS- 934 (1094)
Q Consensus 860 sv~fspdg~~LaSgs~DgtI~vWdi~~~~~---~~~~~~~~~~~V~~v~~~~~~~~fspdg-~~l~~~~~~g~i~l~~~- 934 (1094)
+++...+|.+|+|||.|+++++|.++.+.. .......|...|.+++ ++..+ ..+++.+.|.++++|+.
T Consensus 370 SL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava-------~~~~~asffvsvS~D~tlK~W~l~ 442 (775)
T KOG0319|consen 370 SLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVA-------GSKLGASFFVSVSQDCTLKLWDLP 442 (775)
T ss_pred eeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceee-------ecccCccEEEEecCCceEEEecCC
Confidence 999667889999999999999999855431 1222345777888887 54444 36778888999999974
Q ss_pred --------------------CCCceEEEEeCC--EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC
Q 001349 935 --------------------SKYPKCLALVQG--KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG 992 (1094)
Q Consensus 935 --------------------~~~v~~l~~s~~--~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~ 992 (1094)
.+.|+|++++++ .+++||.|.+.++|++.+.... .++.||...|.++.|++.
T Consensus 443 ~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~------~vLsGH~RGvw~V~Fs~~ 516 (775)
T KOG0319|consen 443 KSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLL------GVLSGHTRGVWCVSFSKN 516 (775)
T ss_pred CcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEE------EEeeCCccceEEEEeccc
Confidence 456899999864 4899999999999999977776 678899999999999999
Q ss_pred ccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEE
Q 001349 993 LVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQC 1069 (1094)
Q Consensus 993 ~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~ 1069 (1094)
...++++|.|. +|+||.+.++.++++|. |...|....|-.+ .+++++.||-|++|++.++.++.++ .+|.+.|++
T Consensus 517 dq~laT~SgD~-TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tl-D~H~DrvWa 594 (775)
T KOG0319|consen 517 DQLLATCSGDK-TVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTL-DAHNDRVWA 594 (775)
T ss_pred cceeEeccCCc-eEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhh-hhccceeEE
Confidence 99999999996 99999999999999999 7788988888765 8999999999999999999999999 699999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1070 MALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1070 l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
++.+|++.+++||+.||.|.+|.
T Consensus 595 L~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 595 LSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred EeecCccceeEecCCCeEEEEee
Confidence 99999999999999999999994
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-27 Score=248.35 Aligned_cols=244 Identities=23% Similarity=0.382 Sum_probs=209.6
Q ss_pred EeCC-cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCC
Q 001349 800 WNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD 876 (1094)
Q Consensus 800 Wd~~-~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D 876 (1094)
|... ....++.+|.+.|.|+++.|. +|+||+.|++|+|||+.++ ++..++.||-..|..++||+-..|+++++.|
T Consensus 137 WHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg--~LkltltGhi~~vr~vavS~rHpYlFs~ged 214 (460)
T KOG0285|consen 137 WHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG--QLKLTLTGHIETVRGVAVSKRHPYLFSAGED 214 (460)
T ss_pred ccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC--eEEEeecchhheeeeeeecccCceEEEecCC
Confidence 4444 455788999999999999994 9999999999999999999 7888999999999999999999999999999
Q ss_pred CcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC--CEEEEEEcC
Q 001349 877 KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ--GKVYCGCQD 954 (1094)
Q Consensus 877 gtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~--~~l~sgs~D 954 (1094)
+.|+-||+..++. ....+.|-+. |.|+..+| +.|++|+.|
T Consensus 215 k~VKCwDLe~nkv-IR~YhGHlS~-------------------------------------V~~L~lhPTldvl~t~grD 256 (460)
T KOG0285|consen 215 KQVKCWDLEYNKV-IRHYHGHLSG-------------------------------------VYCLDLHPTLDVLVTGGRD 256 (460)
T ss_pred CeeEEEechhhhh-HHHhccccce-------------------------------------eEEEeccccceeEEecCCc
Confidence 9999999998641 1111223333 44555543 469999999
Q ss_pred CeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeC
Q 001349 955 GAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSS 1033 (1094)
Q Consensus 955 g~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~sp 1033 (1094)
.++++||+++...+ ..+.||..+|.++.+.+-...+++++.|+ +|++||++.|+...++. |...+.+++.+|
T Consensus 257 st~RvWDiRtr~~V------~~l~GH~~~V~~V~~~~~dpqvit~S~D~-tvrlWDl~agkt~~tlt~hkksvral~lhP 329 (460)
T KOG0285|consen 257 STIRVWDIRTRASV------HVLSGHTNPVASVMCQPTDPQVITGSHDS-TVRLWDLRAGKTMITLTHHKKSVRALCLHP 329 (460)
T ss_pred ceEEEeeecccceE------EEecCCCCcceeEEeecCCCceEEecCCc-eEEEeeeccCceeEeeecccceeeEEecCC
Confidence 99999999999888 67889999999999999888899999997 99999999999888887 678899999999
Q ss_pred C--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1034 E--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1034 d--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
+ .+++++.| .|+-|++..|..+..+ .+|.+.|++++.+.|| ++++|+++|.+.+||-
T Consensus 330 ~e~~fASas~d-nik~w~~p~g~f~~nl-sgh~~iintl~~nsD~-v~~~G~dng~~~fwdw 388 (460)
T KOG0285|consen 330 KENLFASASPD-NIKQWKLPEGEFLQNL-SGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDW 388 (460)
T ss_pred chhhhhccCCc-cceeccCCccchhhcc-ccccceeeeeeeccCc-eEEEcCCceEEEEEec
Confidence 8 46666655 6999999999999997 7999999999998776 7899999999999984
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.9e-27 Score=259.04 Aligned_cols=272 Identities=19% Similarity=0.293 Sum_probs=229.9
Q ss_pred hccccccccccCcEEEEeeCCCCeEEEeCCc--ceeecccCCCcEEEEEEeC--CEEEEEECCCeEEEEecCCCcceeEE
Q 001349 774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGSILHLIQ 849 (1094)
Q Consensus 774 ~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~fsp--d~LaSgs~Dg~I~vWd~~t~~~~~~~ 849 (1094)
..++...+.|--.+++++-++|.|.|||+.+ ....+.-..-+|.+..|-+ +++++|+.|+.|+||+..|+ ..+.
T Consensus 14 dRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~--ekV~ 91 (794)
T KOG0276|consen 14 DRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG--EKVK 91 (794)
T ss_pred CceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc--eeeE
Confidence 3455666667677999999999999999984 4555566678999999987 59999999999999999999 8999
Q ss_pred EecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEec-ccCccceeeeecCceEEEeeCCCeEEEEEeCCe
Q 001349 850 QIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVH-DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 928 (1094)
Q Consensus 850 ~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~-~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~ 928 (1094)
+|..|.+.|.+++.+|.-.+++|+|+|-+|++||.+.+ ..+.+.+ .|..-|.+++ |.|...
T Consensus 92 ~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~-wa~~qtfeGH~HyVMqv~-------fnPkD~---------- 153 (794)
T KOG0276|consen 92 TFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE-WACEQTFEGHEHYVMQVA-------FNPKDP---------- 153 (794)
T ss_pred EeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc-eeeeeEEcCcceEEEEEE-------ecCCCc----------
Confidence 99999999999999999999999999999999999885 3444333 3444455554 444332
Q ss_pred EEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeC--CccEEEEEECCCCEE
Q 001349 929 TKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN--GLVYTASTSLDGAAV 1006 (1094)
Q Consensus 929 i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~--~~~~las~s~Dg~~I 1006 (1094)
+.++++|-|++|++|.+.+..+. .++.+|...|+|+.|.+ |..++++|+.| .++
T Consensus 154 -----------------ntFaS~sLDrTVKVWslgs~~~n------fTl~gHekGVN~Vdyy~~gdkpylIsgaDD-~ti 209 (794)
T KOG0276|consen 154 -----------------NTFASASLDRTVKVWSLGSPHPN------FTLEGHEKGVNCVDYYTGGDKPYLISGADD-LTI 209 (794)
T ss_pred -----------------cceeeeeccccEEEEEcCCCCCc------eeeeccccCcceEEeccCCCcceEEecCCC-ceE
Confidence 46999999999999999888776 67789999999999974 56799999877 599
Q ss_pred EEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEe
Q 001349 1007 KMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGT 1083 (1094)
Q Consensus 1007 ~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs 1083 (1094)
+|||..+..|++++. |..+|..+.|+|. .+++|++||+++||+..+.+...++. -..++|++++-.+.+..++.|.
T Consensus 210 KvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn-~gleRvW~I~~~k~~~~i~vG~ 288 (794)
T KOG0276|consen 210 KVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLN-YGLERVWCIAAHKGDGKIAVGF 288 (794)
T ss_pred EEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhh-cCCceEEEEeecCCCCeEEEec
Confidence 999999999999999 7889999999999 89999999999999999988888874 4456899999999888899998
Q ss_pred CCCcEEE
Q 001349 1084 SDGRIQA 1090 (1094)
Q Consensus 1084 ~DG~I~i 1090 (1094)
+.|.|.+
T Consensus 289 Deg~i~v 295 (794)
T KOG0276|consen 289 DEGSVTV 295 (794)
T ss_pred cCCcEEE
Confidence 8887654
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=266.05 Aligned_cols=276 Identities=18% Similarity=0.291 Sum_probs=216.2
Q ss_pred ccccccccC--cEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEE
Q 001349 777 KYSPLAFEM--VKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQ 850 (1094)
Q Consensus 777 ~~~~~~~d~--~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~ 850 (1094)
+.-.++|.+ -+++++-.+|.|++||+. +++..+..|.|+|..++|+|. +++||+.|.+|+||+..+. +++.+
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r--rclft 88 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR--RCLFT 88 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc--eehhh
Confidence 334444444 489999999999999998 788889999999999999996 9999999999999999999 89999
Q ss_pred ecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEE
Q 001349 851 IREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK 930 (1094)
Q Consensus 851 l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~ 930 (1094)
+.||-+.|..+.|++.-.+|+|+|+|.||+||++.+++..++. ..|..-|.+.. |.|..
T Consensus 89 L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavl-tGHnHYVMcAq-------FhptE------------- 147 (1202)
T KOG0292|consen 89 LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVL-TGHNHYVMCAQ-------FHPTE------------- 147 (1202)
T ss_pred hccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEE-ecCceEEEeec-------cCCcc-------------
Confidence 9999999999999999999999999999999999997422111 12233333333 44433
Q ss_pred EEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEE------------------e-----ccceeecCCCCCeEEE
Q 001349 931 LLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATI------------------Q-----TGHRKLLGKANPVHAL 987 (1094)
Q Consensus 931 l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~------------------~-----~~~~~~~~h~~~V~sl 987 (1094)
+.++++|-|.+|++||+..-+.... + .....+.||...|+-+
T Consensus 148 ---------------DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwa 212 (1202)
T KOG0292|consen 148 ---------------DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWA 212 (1202)
T ss_pred ---------------ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceE
Confidence 3467777777777777642111000 0 0014578999999999
Q ss_pred EEeCCccEEEEEECCCCEEEEEECCCCeE--EEEec-CCCCEEEEEEeC--CEEEEEEcCCeEEEEECCCCcEEEEeccc
Q 001349 988 QVHNGLVYTASTSLDGAAVKMWSTSNYNM--VGSLP-TLSEVRAMVVSS--ELVYLGCKGGTVEIWDQKRQIRIETLQTG 1062 (1094)
Q Consensus 988 ~fs~~~~~las~s~Dg~~I~iwd~~~~~~--~~~~~-~~~~v~~l~~sp--d~l~sgs~dg~I~vwd~~t~~~~~~l~~~ 1062 (1094)
+|+|...++++|+.| +.|++|.+...+. +.+.. |..+|.++-|+| +.+++.|+|++|+|||+...+.+++|..
T Consensus 213 AfhpTlpliVSG~DD-RqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrr- 290 (1202)
T KOG0292|consen 213 AFHPTLPLIVSGADD-RQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRR- 290 (1202)
T ss_pred EecCCcceEEecCCc-ceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeec-
Confidence 999999999999866 6999999875432 22333 789999999999 5999999999999999999999999964
Q ss_pred CCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1063 TSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1063 h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
..++.|.++-+|..+++++|-+.| +-+|.+
T Consensus 291 endRFW~laahP~lNLfAAgHDsG-m~VFkl 320 (1202)
T KOG0292|consen 291 ENDRFWILAAHPELNLFAAGHDSG-MIVFKL 320 (1202)
T ss_pred cCCeEEEEEecCCcceeeeecCCc-eEEEEE
Confidence 345899999999999888776555 555544
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-26 Score=229.05 Aligned_cols=255 Identities=19% Similarity=0.312 Sum_probs=214.1
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCC----cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEe
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQI 851 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~----~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l 851 (1094)
-..+.+|++.|++++.. .||+||+. .++..+.+|++.|+++.|.-+ .++||+.||+++|||++.. .+.+.+
T Consensus 45 rLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~--~~qR~~ 121 (311)
T KOG0315|consen 45 RLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL--SCQRNY 121 (311)
T ss_pred eEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCc--ccchhc
Confidence 34566788888887764 79999997 467889999999999999986 9999999999999999986 555555
Q ss_pred cccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEE
Q 001349 852 REHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL 931 (1094)
Q Consensus 852 ~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l 931 (1094)
.|..+|+++..+|+...|++|..+|.|++||+......+....+...+|.++. +.|||+.
T Consensus 122 -~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~-------v~~dgsm------------ 181 (311)
T KOG0315|consen 122 -QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLT-------VMPDGSM------------ 181 (311)
T ss_pred -cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEE-------EcCCCcE------------
Confidence 58899999999999999999999999999999987555555555566777776 7778775
Q ss_pred EcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEEC
Q 001349 932 LNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWST 1011 (1094)
Q Consensus 932 ~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~ 1011 (1094)
++.+...|..++|++-++.....+.+..++..|..-+....++|++.++++++.|. +++||++
T Consensus 182 ----------------l~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdk-tv~iwn~ 244 (311)
T KOG0315|consen 182 ----------------LAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDK-TVKIWNT 244 (311)
T ss_pred ----------------EEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCc-eEEEEec
Confidence 66667778899999988776666666678999999999999999999999999995 9999999
Q ss_pred CCC-eEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEc
Q 001349 1012 SNY-NMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD 1073 (1094)
Q Consensus 1012 ~~~-~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~S 1073 (1094)
.+. +....+. |...++..+||.| ||++|+.|+.+++||+..++.+..+. ||-....|++..
T Consensus 245 ~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~-gh~K~~vc~~ln 309 (311)
T KOG0315|consen 245 DDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQ-GHHKAAVCVALN 309 (311)
T ss_pred CCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecC-CcccccEEEEee
Confidence 987 4444555 6789999999998 99999999999999999999999994 776666676653
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=234.66 Aligned_cols=268 Identities=19% Similarity=0.229 Sum_probs=222.4
Q ss_pred ecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001349 808 VDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIG 885 (1094)
Q Consensus 808 ~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~ 885 (1094)
.+.||..+++.+.|+.+ +|+|++.|.++.||-..+| ..+.++.||++.||+++.+.+.+.++||+.|.++++||+.
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG--erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG--ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCC--ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 46799999999999974 9999999999999998888 7899999999999999999999999999999999999999
Q ss_pred CCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeC-----CeEEEEcC-------------------CCCceEE
Q 001349 886 NEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRN-----GKTKLLNS-------------------SKYPKCL 941 (1094)
Q Consensus 886 ~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~-----g~i~l~~~-------------------~~~v~~l 941 (1094)
+| +++.....+.+|..+. |+++|+.++....+ +.+.+++. ...+...
T Consensus 83 tG--k~la~~k~~~~Vk~~~-------F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a 153 (327)
T KOG0643|consen 83 TG--KQLATWKTNSPVKRVD-------FSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSA 153 (327)
T ss_pred CC--cEEEEeecCCeeEEEe-------eccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeee
Confidence 99 5566666788899888 88888877766544 34455543 3445666
Q ss_pred EEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEE
Q 001349 942 ALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGS 1019 (1094)
Q Consensus 942 ~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~ 1019 (1094)
.|.+ ..|++|..||.|..||.++|.... .....|...|+.+.++++..++++++.|. +-++||..+-+.+++
T Consensus 154 ~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v-----~s~~~h~~~Ind~q~s~d~T~FiT~s~Dt-takl~D~~tl~v~Kt 227 (327)
T KOG0643|consen 154 LWGPLGETIIAGHEDGSISIYDARTGKELV-----DSDEEHSSKINDLQFSRDRTYFITGSKDT-TAKLVDVRTLEVLKT 227 (327)
T ss_pred eecccCCEEEEecCCCcEEEEEcccCceee-----echhhhccccccccccCCcceEEecccCc-cceeeeccceeeEEE
Confidence 6654 569999999999999999987653 34456888999999999999999999995 999999999999999
Q ss_pred ecCCCCEEEEEEeCC--EEEEEEcCCe--EE------------EEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEe
Q 001349 1020 LPTLSEVRAMVVSSE--LVYLGCKGGT--VE------------IWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGT 1083 (1094)
Q Consensus 1020 ~~~~~~v~~l~~spd--~l~sgs~dg~--I~------------vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs 1083 (1094)
+....+|++.+++|. .++.|+.... |. +|++-..+.+..+ .+|-++|++++|+|||+..++|+
T Consensus 228 y~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrv-kGHFGPINsvAfhPdGksYsSGG 306 (327)
T KOG0643|consen 228 YTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRV-KGHFGPINSVAFHPDGKSYSSGG 306 (327)
T ss_pred eeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccc-cccccCcceeEECCCCcccccCC
Confidence 999999999999995 6666654322 22 2222222345566 48999999999999999999999
Q ss_pred CCCcEEEEeC
Q 001349 1084 SDGRIQAWGL 1093 (1094)
Q Consensus 1084 ~DG~I~iWdl 1093 (1094)
.||.|++..+
T Consensus 307 EDG~VR~h~F 316 (327)
T KOG0643|consen 307 EDGYVRLHHF 316 (327)
T ss_pred CCceEEEEEe
Confidence 9999998643
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=242.15 Aligned_cols=262 Identities=20% Similarity=0.282 Sum_probs=227.9
Q ss_pred hhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCccee
Q 001349 772 LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHL 847 (1094)
Q Consensus 772 ~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~ 847 (1094)
++..+....+.++-..+++++.|++|++||.. +....++||++.|..|+|+.. ++++++.|-.+++||..+. ..+
T Consensus 107 ~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~-~~c 185 (406)
T KOG0295|consen 107 HRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF-FRC 185 (406)
T ss_pred cccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH-HHH
Confidence 34444444555566678899999999999997 567789999999999999974 9999999999999999875 478
Q ss_pred EEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEec-ccCccceeeeecCceEEEeeCCCeEEEEEeC
Q 001349 848 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVH-DIKDQIQNLAVSNSILCFIPQGAGIKVHLRN 926 (1094)
Q Consensus 848 ~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~-~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~ 926 (1094)
++.+.+|...|.++.|-|.|.+++|++.|.+|+.|++.+| .++... .+...|..+. ...||..++.++.+
T Consensus 186 ~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg--~cv~t~~~h~ewvr~v~-------v~~DGti~As~s~d 256 (406)
T KOG0295|consen 186 IKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG--YCVKTFPGHSEWVRMVR-------VNQDGTIIASCSND 256 (406)
T ss_pred HHHhcCcccceeeEEEEecCCeeeecccccceeEEecccc--eeEEeccCchHhEEEEE-------ecCCeeEEEecCCC
Confidence 8899999999999999999999999999999999999998 444443 5677888877 88899999999999
Q ss_pred CeEEEEcC------------CCCceEEEEeC-----------C------EEEEEEcCCeEEEEECCCCceeEEeccceee
Q 001349 927 GKTKLLNS------------SKYPKCLALVQ-----------G------KVYCGCQDGAIQEIDLATGTFATIQTGHRKL 977 (1094)
Q Consensus 927 g~i~l~~~------------~~~v~~l~~s~-----------~------~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~ 977 (1094)
.++++|-. ...|.|++|.+ + .+.+++.|++|++||+.+|.++ .++
T Consensus 257 qtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL------~tL 330 (406)
T KOG0295|consen 257 QTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL------FTL 330 (406)
T ss_pred ceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE------EEE
Confidence 99999963 34578888752 1 4889999999999999999998 678
Q ss_pred cCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEEC
Q 001349 978 LGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQ 1050 (1094)
Q Consensus 978 ~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~ 1050 (1094)
.+|.+.|..++|+|.|.|++++..|+ ++++||++++++..++. |...++++.|+.+ ++++|+-|.++++|..
T Consensus 331 ~ghdnwVr~~af~p~Gkyi~ScaDDk-tlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 331 VGHDNWVRGVAFSPGGKYILSCADDK-TLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ecccceeeeeEEcCCCeEEEEEecCC-cEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 89999999999999999999998775 99999999999999988 7888999999887 9999999999999964
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=252.02 Aligned_cols=277 Identities=17% Similarity=0.215 Sum_probs=231.9
Q ss_pred EEeCCcceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeC
Q 001349 799 FWNHRELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSL 875 (1094)
Q Consensus 799 vWd~~~~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~ 875 (1094)
.+-.+.....+.+|+..|+++.|.|. +|++|+.|+.|+||++-+.. .+++++.+|..+|.++.|+++|..+.|+|.
T Consensus 200 c~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~-~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sf 278 (503)
T KOG0282|consen 200 CYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR-RCLRTFKGHRKPVRDASFNNCGTSFLSASF 278 (503)
T ss_pred eeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc-ceehhhhcchhhhhhhhccccCCeeeeeec
Confidence 34444677889999999999999993 99999999999999998722 899999999999999999999999999999
Q ss_pred CCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCC-CeEEEEEeCCeEEEEcCC------------CCceEEE
Q 001349 876 DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQG-AGIKVHLRNGKTKLLNSS------------KYPKCLA 942 (1094)
Q Consensus 876 DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg-~~l~~~~~~g~i~l~~~~------------~~v~~l~ 942 (1094)
|++|++||+++| .+...+.....+.++. |.|++ +.++++..++.+..||.. +.|..+.
T Consensus 279 D~~lKlwDtETG--~~~~~f~~~~~~~cvk-------f~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~ 349 (503)
T KOG0282|consen 279 DRFLKLWDTETG--QVLSRFHLDKVPTCVK-------FHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDIT 349 (503)
T ss_pred ceeeeeeccccc--eEEEEEecCCCceeee-------cCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeE
Confidence 999999999999 5666666677788887 99998 788889999999999963 4688888
Q ss_pred EeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeE---E
Q 001349 943 LVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNM---V 1017 (1094)
Q Consensus 943 ~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~---~ 1017 (1094)
|-+ .++++.+.|+++++|+.+.+..+... ...+.-...++..+|++.+++.-+.|+ .|.+|.+...-. .
T Consensus 350 F~~~g~rFissSDdks~riWe~~~~v~ik~i-----~~~~~hsmP~~~~~P~~~~~~aQs~dN-~i~ifs~~~~~r~nkk 423 (503)
T KOG0282|consen 350 FVDEGRRFISSSDDKSVRIWENRIPVPIKNI-----ADPEMHTMPCLTLHPNGKWFAAQSMDN-YIAIFSTVPPFRLNKK 423 (503)
T ss_pred EccCCceEeeeccCccEEEEEcCCCccchhh-----cchhhccCcceecCCCCCeehhhccCc-eEEEEecccccccCHh
Confidence 875 46999999999999999887665321 112223466888999999999999886 999998754221 2
Q ss_pred EEecC---CCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCC-CEEEEEeCCCcEEEE
Q 001349 1018 GSLPT---LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNE-EFLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1018 ~~~~~---~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg-~~L~sgs~DG~I~iW 1091 (1094)
..|.+ .+.-..+.|||| +|++|+.||.+.+||.++-+.+..++ .|.+.+..+.|+|.. ..++|++.||.|++|
T Consensus 424 K~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk-ah~~~ci~v~wHP~e~Skvat~~w~G~Ikiw 502 (503)
T KOG0282|consen 424 KRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK-AHDQPCIGVDWHPVEPSKVATCGWDGLIKIW 502 (503)
T ss_pred hhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccc-cCCcceEEEEecCCCcceeEecccCceeEec
Confidence 23332 355678999999 89999999999999999999999994 889999999999965 679999999999999
Q ss_pred e
Q 001349 1092 G 1092 (1094)
Q Consensus 1092 d 1092 (1094)
+
T Consensus 503 d 503 (503)
T KOG0282|consen 503 D 503 (503)
T ss_pred C
Confidence 7
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-25 Score=266.24 Aligned_cols=263 Identities=26% Similarity=0.428 Sum_probs=224.8
Q ss_pred ccccccCcEEEEeeCCCCeEEEeCCc--ceee-cccCCCcEEEEEEe--CCEEEEEECCCeEEEEecCCCcceeEEEecc
Q 001349 779 SPLAFEMVKVLSNGHDSSADFWNHRE--LVHV-DSSENGKVLSIACF--RDKIFSGHSDGTIKVWTGRGSILHLIQQIRE 853 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~dg~I~vWd~~~--~~~~-~~~h~~~V~~l~fs--pd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~ 853 (1094)
...++.+.++++++.|++|++|+..+ .... +.||.+.|++++|. .+++++|+.|.+++|||..++ .|...+.+
T Consensus 212 ~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg--~C~~~l~g 289 (537)
T KOG0274|consen 212 LCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG--ECTHSLQG 289 (537)
T ss_pred hhheeecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC--cEEEEecC
Confidence 34455688999999999999999873 3334 88999999999999 679999999999999999999 89999999
Q ss_pred cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecc-cCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEE
Q 001349 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHD-IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLL 932 (1094)
Q Consensus 854 H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~-~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~ 932 (1094)
|.+.|.++... +..+++||.|.+|++|++.++. ++.... |..+
T Consensus 290 h~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~--~l~l~~~h~~~-------------------------------- 333 (537)
T KOG0274|consen 290 HTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGA--CLNLLRGHTGP-------------------------------- 333 (537)
T ss_pred CCceEEEEEcc--CceEeeccCCceEEEEeccCcc--eEEEecccccc--------------------------------
Confidence 99999998874 5688899999999999999874 222221 4444
Q ss_pred cCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECC
Q 001349 933 NSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS 1012 (1094)
Q Consensus 933 ~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~ 1012 (1094)
|+++....+.+++|+.||+|.+||+.+++++ ..+.+|...|+++.+.+. ..+.+|+.|+ +|++||+.
T Consensus 334 -----V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl------~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~-~IkvWdl~ 400 (537)
T KOG0274|consen 334 -----VNCVQLDEPLLVSGSYDGTVKVWDPRTGKCL------KSLSGHTGRVYSLIVDSE-NRLLSGSLDT-TIKVWDLR 400 (537)
T ss_pred -----EEEEEecCCEEEEEecCceEEEEEhhhceee------eeecCCcceEEEEEecCc-ceEEeeeecc-ceEeecCC
Confidence 4555555667999999999999999999998 678889999999988775 7888999995 99999999
Q ss_pred CC-eEEEEec-CCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEE
Q 001349 1013 NY-NMVGSLP-TLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQA 1090 (1094)
Q Consensus 1013 ~~-~~~~~~~-~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~i 1090 (1094)
+. +++.++. |..-+..+.+...++++++.||+|++||..+++++.++...|.+.|+.+++. ...+++++.||++++
T Consensus 401 ~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l 478 (537)
T KOG0274|consen 401 TKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKL 478 (537)
T ss_pred chhhhhhhhcCCcccccccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEE
Confidence 99 8999998 5566777888888999999999999999999999999964377889999886 467899999999999
Q ss_pred EeCC
Q 001349 1091 WGLS 1094 (1094)
Q Consensus 1091 Wdls 1094 (1094)
||+.
T Consensus 479 ~dl~ 482 (537)
T KOG0274|consen 479 WDLR 482 (537)
T ss_pred Eecc
Confidence 9973
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-27 Score=250.02 Aligned_cols=278 Identities=18% Similarity=0.248 Sum_probs=232.2
Q ss_pred HHHHHHhhhccccccccccCcEEEEeeCCCCeEEEeCC----cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEe
Q 001349 766 KDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWT 839 (1094)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~----~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd 839 (1094)
..++.+|..-.+.+-|-.+...|++|+.|..|++|+.. +...++.|..++|+++.|.++ ++++++.|+.+++|+
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN 247 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee
Confidence 34455565556666677777899999999999999986 366778888999999999886 899999999999999
Q ss_pred cCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCe
Q 001349 840 GRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAG 919 (1094)
Q Consensus 840 ~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~ 919 (1094)
+... ....++.+|++.|+++.|......+++|+.|.+|++||+... .|....-..+.+..+.
T Consensus 248 vd~~--r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~--~C~kt~l~~S~cnDI~-------------- 309 (459)
T KOG0288|consen 248 VDSL--RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA--YCSKTVLPGSQCNDIV-------------- 309 (459)
T ss_pred ccch--hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhh--heeccccccccccceE--------------
Confidence 9998 788999999999999999987777999999999999999885 4443332222222222
Q ss_pred EEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEE
Q 001349 920 IKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAST 999 (1094)
Q Consensus 920 l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~ 999 (1094)
..+..+++|..|+.|++||++++.... ....+ +.|+++..+.++.-+.++
T Consensus 310 -----------------------~~~~~~~SgH~DkkvRfwD~Rs~~~~~------sv~~g-g~vtSl~ls~~g~~lLss 359 (459)
T KOG0288|consen 310 -----------------------CSISDVISGHFDKKVRFWDIRSADKTR------SVPLG-GRVTSLDLSMDGLELLSS 359 (459)
T ss_pred -----------------------ecceeeeecccccceEEEeccCCceee------EeecC-cceeeEeeccCCeEEeee
Confidence 112247889999999999999998874 33333 489999999999999999
Q ss_pred ECCCCEEEEEECCCCeEEEEec-----CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCc-ceEEEE
Q 001349 1000 SLDGAAVKMWSTSNYNMVGSLP-----TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSG-KVQCMA 1071 (1094)
Q Consensus 1000 s~Dg~~I~iwd~~~~~~~~~~~-----~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~-~I~~l~ 1071 (1094)
+.|+ ++.+.|+++....+.+. .....+.+.|||+ |+++||.||.|+||++.++++...+...+.. .|++++
T Consensus 360 sRDd-tl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~ 438 (459)
T KOG0288|consen 360 SRDD-TLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLS 438 (459)
T ss_pred cCCC-ceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEE
Confidence 9997 99999999999888876 2456889999998 9999999999999999999999998755555 699999
Q ss_pred EcCCCCEEEEEeCCCcEEEEe
Q 001349 1072 LDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1072 ~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
|+|.|..|++++.++.+.+|.
T Consensus 439 W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 439 WNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EcCCCchhhcccCCcceEecC
Confidence 999999999999999999994
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=254.74 Aligned_cols=278 Identities=22% Similarity=0.347 Sum_probs=231.0
Q ss_pred HHhhhccccccccccCcEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCccee
Q 001349 770 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHL 847 (1094)
Q Consensus 770 ~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~ 847 (1094)
.+|+.-++...++.+...+++|+ .+.|++|+.++......-..+.+.+..|-|. ++++|...|.+.++|+... ..
T Consensus 370 ~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~--~l 446 (888)
T KOG0306|consen 370 GGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASA--SL 446 (888)
T ss_pred ccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehh--hh
Confidence 35566666667776666666654 4689999998555444445568999999984 9999999999999999988 67
Q ss_pred EEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-----Cce-E-----EEEecccCccceeeeecCceEEEeeC
Q 001349 848 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGN-----EEI-H-----CVQVHDIKDQIQNLAVSNSILCFIPQ 916 (1094)
Q Consensus 848 ~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~-----~~~-~-----~~~~~~~~~~V~~v~~~~~~~~fspd 916 (1094)
+.+++.|.+.||+++.+||+..++|||.|.+|++||..- |.. + .....+..+.|.++. +|||
T Consensus 447 ~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~-------~Spd 519 (888)
T KOG0306|consen 447 VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVS-------VSPD 519 (888)
T ss_pred hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEE-------EcCC
Confidence 888899999999999999999999999999999999742 110 1 111222334444444 5666
Q ss_pred CCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEE
Q 001349 917 GAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYT 996 (1094)
Q Consensus 917 g~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~l 996 (1094)
|++ ++++--|.+|++|-+.+-+.. ..+.||.-||.|+..+||+..+
T Consensus 520 gk~----------------------------LaVsLLdnTVkVyflDtlKFf------lsLYGHkLPV~smDIS~DSkli 565 (888)
T KOG0306|consen 520 GKL----------------------------LAVSLLDNTVKVYFLDTLKFF------LSLYGHKLPVLSMDISPDSKLI 565 (888)
T ss_pred CcE----------------------------EEEEeccCeEEEEEecceeee------eeecccccceeEEeccCCcCeE
Confidence 654 666777888888888877765 6788999999999999999999
Q ss_pred EEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEc
Q 001349 997 ASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD 1073 (1094)
Q Consensus 997 as~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~S 1073 (1094)
++||.| +.|++|-+.-|.|-+++- |.+.|.++.|-|+ .+++++.|+.|+-||-.....+..+ .+|...|++++.+
T Consensus 566 vTgSAD-KnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L-~~H~~ev~cLav~ 643 (888)
T KOG0306|consen 566 VTGSAD-KNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL-DGHHSEVWCLAVS 643 (888)
T ss_pred EeccCC-CceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheee-ccchheeeeeEEc
Confidence 999999 599999999999988876 8899999999998 7999999999999999999999999 5899999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeC
Q 001349 1074 DNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1074 pdg~~L~sgs~DG~I~iWdl 1093 (1094)
|+|.+++++|.|.+|++|.-
T Consensus 644 ~~G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 644 PNGSFVVSSSHDKSIRLWER 663 (888)
T ss_pred CCCCeEEeccCCceeEeeec
Confidence 99999999999999999974
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-26 Score=237.52 Aligned_cols=271 Identities=19% Similarity=0.264 Sum_probs=226.7
Q ss_pred cccccccccCcEEEEeeCCCCeEEEeCCcc----------eeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCC
Q 001349 776 RKYSPLAFEMVKVLSNGHDSSADFWNHREL----------VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS 843 (1094)
Q Consensus 776 ~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~----------~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~ 843 (1094)
.....|++||.++++|+.||.|.|||+.+. ...+-.|..+|.|+.|+.| .+++|+.||.|+||.+.+|
T Consensus 216 ~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG 295 (508)
T KOG0275|consen 216 VECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG 295 (508)
T ss_pred hhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecc
Confidence 345679999999999999999999998621 1223457899999999997 9999999999999999999
Q ss_pred cceeEEEec-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEE-ecccCccceeeeecCceEEEeeCCCeEE
Q 001349 844 ILHLIQQIR-EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQ-VHDIKDQIQNLAVSNSILCFIPQGAGIK 921 (1094)
Q Consensus 844 ~~~~~~~l~-~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~-~~~~~~~V~~v~~~~~~~~fspdg~~l~ 921 (1094)
.|++.|. .|+..|+++.||.|+..+.++|.|.++|+.-+.+|+ ++. ...|.+-|+... |.+||..
T Consensus 296 --~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK--~LKEfrGHsSyvn~a~-------ft~dG~~-- 362 (508)
T KOG0275|consen 296 --QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK--CLKEFRGHSSYVNEAT-------FTDDGHH-- 362 (508)
T ss_pred --hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch--hHHHhcCccccccceE-------EcCCCCe--
Confidence 8999887 899999999999999999999999999999999985 222 234556666655 8888874
Q ss_pred EEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeC-CccEEEEEE
Q 001349 922 VHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTS 1000 (1094)
Q Consensus 922 ~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~-~~~~las~s 1000 (1094)
+++++.||+|++|+..++++..++.. .+...+|+++..-| +...++.+.
T Consensus 363 --------------------------iisaSsDgtvkvW~~KtteC~~Tfk~----~~~d~~vnsv~~~PKnpeh~iVCN 412 (508)
T KOG0275|consen 363 --------------------------IISASSDGTVKVWHGKTTECLSTFKP----LGTDYPVNSVILLPKNPEHFIVCN 412 (508)
T ss_pred --------------------------EEEecCCccEEEecCcchhhhhhccC----CCCcccceeEEEcCCCCceEEEEc
Confidence 88999999999999999999866543 24556788887754 344556665
Q ss_pred CCCCEEEEEECCCCeEEEEecC----CCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcC
Q 001349 1001 LDGAAVKMWSTSNYNMVGSLPT----LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDD 1074 (1094)
Q Consensus 1001 ~Dg~~I~iwd~~~~~~~~~~~~----~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Sp 1074 (1094)
..+ +|.|.++ .|+.+++|.. ++...+.+.||. ++++.++|+.++.|.+.+|+.-.++ .-|...|..++-+|
T Consensus 413 rsn-tv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl-~VhEkdvIGl~HHP 489 (508)
T KOG0275|consen 413 RSN-TVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTL-PVHEKDVIGLTHHP 489 (508)
T ss_pred CCC-eEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeee-ecccccccccccCc
Confidence 554 9999998 5788888872 456777788887 8999999999999999999999988 57888999999999
Q ss_pred CCCEEEEEeCCCcEEEEe
Q 001349 1075 NEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1075 dg~~L~sgs~DG~I~iWd 1092 (1094)
..+.|++-+.||.+++|.
T Consensus 490 HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 490 HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ccchhhhhcccchhhhcC
Confidence 999999999999999995
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-25 Score=260.27 Aligned_cols=245 Identities=24% Similarity=0.432 Sum_probs=208.3
Q ss_pred eeccc-CCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 001349 807 HVDSS-ENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWS 883 (1094)
Q Consensus 807 ~~~~~-h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWd 883 (1094)
..+.+ |...|.++.|+++ .+++++.|+.+++|+..+......+.+.+|...|.+++|+|||+++++++.|++|+|||
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd 231 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWD 231 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEee
Confidence 34434 4889999999997 99999999999999997762126777789999999999999999999999999999999
Q ss_pred CCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECC
Q 001349 884 IGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA 963 (1094)
Q Consensus 884 i~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~ 963 (1094)
+............|...|++++ |+|+|+ .+++|+.|++|++||++
T Consensus 232 ~~~~~~~~~~l~gH~~~v~~~~-------f~p~g~----------------------------~i~Sgs~D~tvriWd~~ 276 (456)
T KOG0266|consen 232 LKDDGRNLKTLKGHSTYVTSVA-------FSPDGN----------------------------LLVSGSDDGTVRIWDVR 276 (456)
T ss_pred ccCCCeEEEEecCCCCceEEEE-------ecCCCC----------------------------EEEEecCCCcEEEEecc
Confidence 9444223333347788888887 888885 38899999999999999
Q ss_pred CCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCe--EEEEec-CCC--CEEEEEEeCC--EE
Q 001349 964 TGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN--MVGSLP-TLS--EVRAMVVSSE--LV 1036 (1094)
Q Consensus 964 ~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~--~~~~~~-~~~--~v~~l~~spd--~l 1036 (1094)
++++. ..+.+|...|++++|++++.++++++.|+ .|++||+.++. +...+. +.. .++.+.|+|+ ++
T Consensus 277 ~~~~~------~~l~~hs~~is~~~f~~d~~~l~s~s~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~l 349 (456)
T KOG0266|consen 277 TGECV------RKLKGHSDGISGLAFSPDGNLLVSASYDG-TIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYL 349 (456)
T ss_pred CCeEE------EeeeccCCceEEEEECCCCCEEEEcCCCc-cEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEE
Confidence 99888 77889999999999999999999999986 99999999998 556665 222 5899999998 89
Q ss_pred EEEEcCCeEEEEECCCCcEEEEecccCCc---ceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1037 YLGCKGGTVEIWDQKRQIRIETLQTGTSG---KVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1037 ~sgs~dg~I~vwd~~t~~~~~~l~~~h~~---~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
++++.|+.+++||+..+..+..+. +|.. .+.+..+++.+.++++|+.|+.|++||+.
T Consensus 350 l~~~~d~~~~~w~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 350 LSASLDRTLKLWDLRSGKSVGTYT-GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSS 409 (456)
T ss_pred EEecCCCeEEEEEccCCcceeeec-ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCC
Confidence 999999999999999999999984 6665 34555668899999999999999999974
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-26 Score=245.90 Aligned_cols=235 Identities=21% Similarity=0.364 Sum_probs=204.2
Q ss_pred CCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceE
Q 001349 813 NGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIH 890 (1094)
Q Consensus 813 ~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~ 890 (1094)
...|..|.|.|+ .|++|+..|.+.+|+..+- .....++.|..+|.++.|+++|.+++||+.+|.|++|+.+.+..+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f--nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk 173 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF--NFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVK 173 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCcee--eHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhH
Confidence 468999999997 9999999999999998655 334456899999999999999999999999999999998875433
Q ss_pred EEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEE
Q 001349 891 CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATI 970 (1094)
Q Consensus 891 ~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~ 970 (1094)
.+..+ +...|.+++ |+|+.. ++++++.||+|+|||....+..
T Consensus 174 ~~~ah-h~eaIRdla-------fSpnDs----------------------------kF~t~SdDg~ikiWdf~~~kee-- 215 (464)
T KOG0284|consen 174 IIQAH-HAEAIRDLA-------FSPNDS----------------------------KFLTCSDDGTIKIWDFRMPKEE-- 215 (464)
T ss_pred HhhHh-hhhhhheec-------cCCCCc----------------------------eeEEecCCCeEEEEeccCCchh--
Confidence 22222 235666666 665443 5899999999999999888765
Q ss_pred eccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEE
Q 001349 971 QTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEI 1047 (1094)
Q Consensus 971 ~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~v 1047 (1094)
..+.||.-.|.+++|||...++++++.|. .|++||.+++.++.++. |...|..+.|+++ +|+++|.|..+++
T Consensus 216 ----~vL~GHgwdVksvdWHP~kgLiasgskDn-lVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv 290 (464)
T KOG0284|consen 216 ----RVLRGHGWDVKSVDWHPTKGLIASGSKDN-LVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKV 290 (464)
T ss_pred ----heeccCCCCcceeccCCccceeEEccCCc-eeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEE
Confidence 56789999999999999999999999996 99999999999999998 7788999999998 9999999999999
Q ss_pred EECCCCcEEEEecccCCcceEEEEEcCCC-CEEEEEeCCCcEEEEeC
Q 001349 1048 WDQKRQIRIETLQTGTSGKVQCMALDDNE-EFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1048 wd~~t~~~~~~l~~~h~~~I~~l~~Spdg-~~L~sgs~DG~I~iWdl 1093 (1094)
||+++.+.+.++ .+|...|+++.|+|-. .+|.+|+.||.|..|.+
T Consensus 291 ~DiR~mkEl~~~-r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v 336 (464)
T KOG0284|consen 291 FDIRTMKELFTY-RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVV 336 (464)
T ss_pred EehhHhHHHHHh-hcchhhheeeccccccccceeeccCCCceEEEec
Confidence 999998989999 5999999999999954 67889999999999976
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-24 Score=217.00 Aligned_cols=281 Identities=14% Similarity=0.212 Sum_probs=231.4
Q ss_pred HHHHHHHHhhhccccccccccCcEEEEeeCCCCeEEEeCCc----ceeecccCCCcEEEEEEeC---CEEEEEECCCeEE
Q 001349 764 HMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE----LVHVDSSENGKVLSIACFR---DKIFSGHSDGTIK 836 (1094)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~----~~~~~~~h~~~V~~l~fsp---d~LaSgs~Dg~I~ 836 (1094)
+...-.+.+..-.+...+..+|.++++|+.|+++.+|++.. ......+|++.|-.++|+| |.+++++.|.+|+
T Consensus 11 l~~r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir 90 (313)
T KOG1407|consen 11 LKRRELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIR 90 (313)
T ss_pred hhhHHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEE
Confidence 33355567777778889999999999999999999999873 3456778999999999987 5999999999999
Q ss_pred EEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeC
Q 001349 837 VWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQ 916 (1094)
Q Consensus 837 vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspd 916 (1094)
+||+..+ +++..+....+.+ -+.|+|+|.+++.++.|..|.+.|.++.+ .....+....+..+. |+-+
T Consensus 91 ~wd~r~~--k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~--~~~~~~~~~e~ne~~-------w~~~ 158 (313)
T KOG1407|consen 91 IWDIRSG--KCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYK--IVNEEQFKFEVNEIS-------WNNS 158 (313)
T ss_pred EEEeccC--cEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccc--eeehhcccceeeeee-------ecCC
Confidence 9999999 7887776554544 48899999999999999999999998853 333333333333433 3322
Q ss_pred CCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEE
Q 001349 917 GAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYT 996 (1094)
Q Consensus 917 g~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~l 996 (1094)
+. .++.....|+|.|.....-+++ ..+..|.....|+.|+|+|.++
T Consensus 159 nd----------------------------~Fflt~GlG~v~ILsypsLkpv------~si~AH~snCicI~f~p~Gryf 204 (313)
T KOG1407|consen 159 ND----------------------------LFFLTNGLGCVEILSYPSLKPV------QSIKAHPSNCICIEFDPDGRYF 204 (313)
T ss_pred CC----------------------------EEEEecCCceEEEEeccccccc------cccccCCcceEEEEECCCCceE
Confidence 22 3444555688888887766665 6778899999999999999999
Q ss_pred EEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEc
Q 001349 997 ASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD 1073 (1094)
Q Consensus 997 as~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~S 1073 (1094)
++|+.|. .+.+||+...-+.+.+. +.-+|..+.||.| +|++||+|..|-|=++.+|..+..++ +.++...++|+
T Consensus 205 A~GsADA-lvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~--~~~~t~tVAWH 281 (313)
T KOG1407|consen 205 ATGSADA-LVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP--CEGPTFTVAWH 281 (313)
T ss_pred eeccccc-eeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee--ccCCceeEEec
Confidence 9999996 99999999999999998 7888999999988 89999999999999999999999995 88899999999
Q ss_pred CCCCEEEEEeCC---------CcEEEEeC
Q 001349 1074 DNEEFLVIGTSD---------GRIQAWGL 1093 (1094)
Q Consensus 1074 pdg~~L~sgs~D---------G~I~iWdl 1093 (1094)
|...+|+-+++| |+|++|.+
T Consensus 282 Pk~~LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 282 PKRPLLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred CCCceeeEEecCCCCccccccceeEEecC
Confidence 999999877654 67888865
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-25 Score=226.13 Aligned_cols=246 Identities=19% Similarity=0.294 Sum_probs=199.9
Q ss_pred cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 001349 804 ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 881 (1094)
Q Consensus 804 ~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~v 881 (1094)
.+...+.+|++.|+.+.|+|+ +|+||+.|..|.+|++.... +-...+++|.++|..+.|.+|++.++++|.|++|+.
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc-eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC-ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRG 116 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc-cceeeeccccceeEeeeeccCCCEEEEecCCceEEE
Confidence 455677899999999999997 99999999999999976543 567788899999999999999999999999999999
Q ss_pred EECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEE
Q 001349 882 WSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEID 961 (1094)
Q Consensus 882 Wdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwD 961 (1094)
||+.+|+ .......+..-|+.+. .+.-|. -.+.+|+.||++++||
T Consensus 117 wD~~tG~-~~rk~k~h~~~vNs~~-------p~rrg~---------------------------~lv~SgsdD~t~kl~D 161 (338)
T KOG0265|consen 117 WDAETGK-RIRKHKGHTSFVNSLD-------PSRRGP---------------------------QLVCSGSDDGTLKLWD 161 (338)
T ss_pred Eecccce-eeehhccccceeeecC-------ccccCC---------------------------eEEEecCCCceEEEEe
Confidence 9999985 2222223333344332 111111 1378899999999999
Q ss_pred CCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEE
Q 001349 962 LATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYL 1038 (1094)
Q Consensus 962 l~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~s 1038 (1094)
+++...+..+. ....++++.|...+..+.+++.|+ .|++||++.+.....+. |.+.|+.+..+++ ++.+
T Consensus 162 ~R~k~~~~t~~-------~kyqltAv~f~d~s~qv~sggIdn-~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~lls 233 (338)
T KOG0265|consen 162 IRKKEAIKTFE-------NKYQLTAVGFKDTSDQVISGGIDN-DIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLS 233 (338)
T ss_pred ecccchhhccc-------cceeEEEEEecccccceeeccccC-ceeeeccccCcceEEeecccCceeeEEeccCCCcccc
Confidence 99888764433 235789999999999999999996 99999999999999988 7789999999998 8889
Q ss_pred EEcCCeEEEEECCC----CcEEEEecccCCc----ceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1039 GCKGGTVEIWDQKR----QIRIETLQTGTSG----KVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1039 gs~dg~I~vwd~~t----~~~~~~l~~~h~~----~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
-+.|+++++||++- ..++..+. +|.. ....++|||++..+.+|+.|..+++||.+
T Consensus 234 nsMd~tvrvwd~rp~~p~~R~v~if~-g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~ 296 (338)
T KOG0265|consen 234 NSMDNTVRVWDVRPFAPSQRCVKIFQ-GHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTT 296 (338)
T ss_pred ccccceEEEEEecccCCCCceEEEee-cchhhhhhhcceeeccCCCCccccccccceEEEeecc
Confidence 99999999999864 33466663 4432 45678999999999999999999999963
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-24 Score=242.46 Aligned_cols=317 Identities=18% Similarity=0.266 Sum_probs=247.7
Q ss_pred HHhhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeC-C-EEEEEECCCeEEEEecCCCcc
Q 001349 770 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR-D-KIFSGHSDGTIKVWTGRGSIL 845 (1094)
Q Consensus 770 ~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fsp-d-~LaSgs~Dg~I~vWd~~t~~~ 845 (1094)
.+|+..+....+...|.++++||.|+.|.+||+- .....+.||++.|+..-|.. + ++++.+.|+.|++||+.+.
T Consensus 104 ngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tq-- 181 (888)
T KOG0306|consen 104 NGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQ-- 181 (888)
T ss_pred cccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccc--
Confidence 3466666666778889999999999999999986 57788899999999999988 3 9999999999999999999
Q ss_pred eeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC----------------------c--------------e
Q 001349 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNE----------------------E--------------I 889 (1094)
Q Consensus 846 ~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~----------------------~--------------~ 889 (1094)
.|..+.-.|.+.||++++.+ +.+++++.|+.+++|++... + +
T Consensus 182 hCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~ 259 (888)
T KOG0306|consen 182 HCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFL 259 (888)
T ss_pred eeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEE
Confidence 89999999999999999986 78999999999999998100 0 0
Q ss_pred EEE-----------------------------------------------------------------------------
Q 001349 890 HCV----------------------------------------------------------------------------- 892 (1094)
Q Consensus 890 ~~~----------------------------------------------------------------------------- 892 (1094)
.|.
T Consensus 260 ~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv 339 (888)
T KOG0306|consen 260 VCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLV 339 (888)
T ss_pred EEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEE
Confidence 000
Q ss_pred ----------------------------EecccCccceeeeecCc--------------------------------eEE
Q 001349 893 ----------------------------QVHDIKDQIQNLAVSNS--------------------------------ILC 912 (1094)
Q Consensus 893 ----------------------------~~~~~~~~V~~v~~~~~--------------------------------~~~ 912 (1094)
....|+..|.+++++.+ ...
T Consensus 340 ~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~ 419 (888)
T KOG0306|consen 340 LLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASK 419 (888)
T ss_pred EeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEE
Confidence 00001111112221111 234
Q ss_pred EeeCCCeEEEEEeCCeEEEEc------------CCCCceEEEEeCC--EEEEEEcCCeEEEEECCCC-----ceeEEe-c
Q 001349 913 FIPQGAGIKVHLRNGKTKLLN------------SSKYPKCLALVQG--KVYCGCQDGAIQEIDLATG-----TFATIQ-T 972 (1094)
Q Consensus 913 fspdg~~l~~~~~~g~i~l~~------------~~~~v~~l~~s~~--~l~sgs~Dg~I~iwDl~~~-----~~~~~~-~ 972 (1094)
|.|.+++++++..+|.+.+++ |.+.+.+++..++ .+++|+.|.+|++||..-- .....+ -
T Consensus 420 Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl 499 (888)
T KOG0306|consen 420 FVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSL 499 (888)
T ss_pred ecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeee
Confidence 556666666666667666665 3466778877653 4899999999999986421 110000 0
Q ss_pred cceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEE
Q 001349 973 GHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWD 1049 (1094)
Q Consensus 973 ~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd 1049 (1094)
.+.+...-...|.|+.++||+.+++.+-.|. +|++|-+.+.+..-++. |.-+|.+|.+||| .+++||.|..|+||-
T Consensus 500 ~~~rtLel~ddvL~v~~Spdgk~LaVsLLdn-TVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWG 578 (888)
T KOG0306|consen 500 KHTRTLELEDDVLCVSVSPDGKLLAVSLLDN-TVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWG 578 (888)
T ss_pred ccceEEeccccEEEEEEcCCCcEEEEEeccC-eEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEec
Confidence 0112233456899999999999999999996 99999999988877776 7889999999999 899999999999999
Q ss_pred CCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1050 QKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1050 ~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
++-|.+-+.+ .+|.+.|.++.|-|+...+.++|.||.|+-||
T Consensus 579 LdFGDCHKS~-fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWD 620 (888)
T KOG0306|consen 579 LDFGDCHKSF-FAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWD 620 (888)
T ss_pred cccchhhhhh-hcccCceeEEEEcccceeEEEecCcceEEeec
Confidence 9999999999 69999999999999999999999999999997
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=231.63 Aligned_cols=242 Identities=28% Similarity=0.474 Sum_probs=201.3
Q ss_pred eecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 001349 807 HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSI 884 (1094)
Q Consensus 807 ~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi 884 (1094)
..+.+|.++|++++|+|+ ++++++.||.|++||+.++ .....+..|...+..+.|+|+++++++++.||.|++||+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG--ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC--CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 456689999999999995 9999999999999999988 577788899999999999999999999999999999999
Q ss_pred CCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCC
Q 001349 885 GNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT 964 (1094)
Q Consensus 885 ~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~ 964 (1094)
.+++.. .....+...+.++. |++++. .+++++.||.|.+||+.+
T Consensus 81 ~~~~~~-~~~~~~~~~i~~~~-------~~~~~~----------------------------~~~~~~~~~~i~~~~~~~ 124 (289)
T cd00200 81 ETGECV-RTLTGHTSYVSSVA-------FSPDGR----------------------------ILSSSSRDKTIKVWDVET 124 (289)
T ss_pred Ccccce-EEEeccCCcEEEEE-------EcCCCC----------------------------EEEEecCCCeEEEEECCC
Confidence 885311 11112333444444 444433 355666699999999998
Q ss_pred CceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEc
Q 001349 965 GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCK 1041 (1094)
Q Consensus 965 ~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~ 1041 (1094)
++.. ..+..|...+.++.|++++.++++++.++ .|++||+++++....+. +...+.++.|+|+ .+++++.
T Consensus 125 ~~~~------~~~~~~~~~i~~~~~~~~~~~l~~~~~~~-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 197 (289)
T cd00200 125 GKCL------TTLRGHTDWVNSVAFSPDGTFVASSSQDG-TIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS 197 (289)
T ss_pred cEEE------EEeccCCCcEEEEEEcCcCCEEEEEcCCC-cEEEEEccccccceeEecCccccceEEECCCcCEEEEecC
Confidence 7766 34557888999999999988888887675 99999999888888877 5568999999998 7888988
Q ss_pred CCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1042 GGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1042 dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
+|.|++||+.+++.+..+ ..|...|.+++|+|++.++++++.||.|++|++.
T Consensus 198 ~~~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 198 DGTIKLWDLSTGKCLGTL-RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR 249 (289)
T ss_pred CCcEEEEECCCCceecch-hhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcC
Confidence 999999999999888888 4788899999999999999988889999999973
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.2e-25 Score=243.13 Aligned_cols=241 Identities=19% Similarity=0.284 Sum_probs=208.0
Q ss_pred ecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001349 808 VDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIG 885 (1094)
Q Consensus 808 ~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~ 885 (1094)
.+..|...|.++.|+|. .++++-..|.|.|||.++. ..++.+.-..-+|.+..|-+.-+++++|++|..||||+.+
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetq--tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ--TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN 85 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccc--eeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence 44568999999999996 9999999999999999998 7889998888999999999999999999999999999999
Q ss_pred CCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCC
Q 001349 886 NEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATG 965 (1094)
Q Consensus 886 ~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~ 965 (1094)
+++ +......|.+-|.+++ .+|.. ..+++++.|-+|++||...+
T Consensus 86 t~e-kV~~FeAH~DyIR~ia-------vHPt~----------------------------P~vLtsSDDm~iKlW~we~~ 129 (794)
T KOG0276|consen 86 TGE-KVKTFEAHSDYIRSIA-------VHPTL----------------------------PYVLTSSDDMTIKLWDWENE 129 (794)
T ss_pred cce-eeEEeeccccceeeee-------ecCCC----------------------------CeEEecCCccEEEEeeccCc
Confidence 975 3333333444444444 23322 24889999999999998865
Q ss_pred ceeEEeccceeecCCCCCeEEEEEeC-CccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC----EEEEE
Q 001349 966 TFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE----LVYLG 1039 (1094)
Q Consensus 966 ~~~~~~~~~~~~~~h~~~V~sl~fs~-~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd----~l~sg 1039 (1094)
-... +++.||..-|.+++|+| |...+++++.|. +|++|.+.+..+..++. |...|+++.+-+. ++++|
T Consensus 130 wa~~-----qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr-TVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsg 203 (794)
T KOG0276|consen 130 WACE-----QTFEGHEHYVMQVAFNPKDPNTFASASLDR-TVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISG 203 (794)
T ss_pred eeee-----eEEcCcceEEEEEEecCCCccceeeeeccc-cEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEec
Confidence 4332 68899999999999986 677889999995 99999999999999998 7889999999754 99999
Q ss_pred EcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1040 CKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1040 s~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
++|.+|+|||..+.++++++ .||...|+.+.|+|.-.+++|||.||+++||+-
T Consensus 204 aDD~tiKvWDyQtk~CV~TL-eGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 204 ADDLTIKVWDYQTKSCVQTL-EGHTNNVSFVFFHPELPIIISGSEDGTVRIWNS 256 (794)
T ss_pred CCCceEEEeecchHHHHHHh-hcccccceEEEecCCCcEEEEecCCccEEEecC
Confidence 99999999999999999999 699999999999999999999999999999973
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.3e-24 Score=215.36 Aligned_cols=254 Identities=18% Similarity=0.270 Sum_probs=207.5
Q ss_pred ccccccc-CcEEEEeeCCCCeEEEeCCc-----ceee-cccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeE
Q 001349 778 YSPLAFE-MVKVLSNGHDSSADFWNHRE-----LVHV-DSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLI 848 (1094)
Q Consensus 778 ~~~~~~d-~~~l~s~s~dg~I~vWd~~~-----~~~~-~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~ 848 (1094)
..++.+- |..|+++|.|+.|++|+... +..+ -.+|+..|.+++|+|. +|++||.|.++.||.-..+.++++
T Consensus 19 ~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv 98 (312)
T KOG0645|consen 19 SVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECV 98 (312)
T ss_pred EEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEE
Confidence 3444443 66899999999999999872 3333 3479999999999995 999999999999999999999999
Q ss_pred EEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc-eEEEEec-ccCccceeeeecCceEEEeeCCCeEEEEEeC
Q 001349 849 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE-IHCVQVH-DIKDQIQNLAVSNSILCFIPQGAGIKVHLRN 926 (1094)
Q Consensus 849 ~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~-~~~~~~~-~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~ 926 (1094)
.++.||.+.|.+++|+++|++|||+|+|+.|-||.+..+. ..+.... +|...|..+. |.|....+++.++|
T Consensus 99 ~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~-------WHPt~dlL~S~SYD 171 (312)
T KOG0645|consen 99 ATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVI-------WHPTEDLLFSCSYD 171 (312)
T ss_pred eeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEE-------EcCCcceeEEeccC
Confidence 9999999999999999999999999999999999998543 5555543 5677788877 89999999999999
Q ss_pred CeEEEEcC---------------CCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEE
Q 001349 927 GKTKLLNS---------------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQV 989 (1094)
Q Consensus 927 g~i~l~~~---------------~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~f 989 (1094)
.++++|.. ...|.+++|++ .++++++.|++|++|-..+.-. .-|..+++.+.|
T Consensus 172 nTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~----------~~~sr~~Y~v~W 241 (312)
T KOG0645|consen 172 NTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS----------GMHSRALYDVPW 241 (312)
T ss_pred CeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc----------hhcccceEeeee
Confidence 99999863 34688999986 4799999999999998663321 236788999999
Q ss_pred eCCccEEEEEECCCCEEEEEECCCC------eEEEEe--cCCCCEEEEEEeCC---EEEEEEcCCeEEEEECC
Q 001349 990 HNGLVYTASTSLDGAAVKMWSTSNY------NMVGSL--PTLSEVRAMVVSSE---LVYLGCKGGTVEIWDQK 1051 (1094)
Q Consensus 990 s~~~~~las~s~Dg~~I~iwd~~~~------~~~~~~--~~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~ 1051 (1094)
. + -.+++++.|+ .|++|.-... +.+... .|...|+++.|.|. ++++|++||.|++|.+.
T Consensus 242 ~-~-~~IaS~ggD~-~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 242 D-N-GVIASGGGDD-AIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred c-c-cceEeccCCC-EEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 8 3 4568888886 8999976642 111211 26778999999994 89999999999999864
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.2e-25 Score=226.23 Aligned_cols=281 Identities=17% Similarity=0.223 Sum_probs=220.2
Q ss_pred HhhhccccccccccCcEEEEeeCCCCeEEEeCC--------------------cceeecccCCCcEEEEEEeCC--EEEE
Q 001349 771 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--------------------ELVHVDSSENGKVLSIACFRD--KIFS 828 (1094)
Q Consensus 771 ~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--------------------~~~~~~~~h~~~V~~l~fspd--~LaS 828 (1094)
.|+..-+...|++||..++||+.|..|+|.|+. ..+.++..|.+.|+++.|+|. .|++
T Consensus 110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS 189 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILIS 189 (430)
T ss_pred ecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEe
Confidence 345556678899999999999999999999975 245667789999999999995 9999
Q ss_pred EECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecC
Q 001349 829 GHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSN 908 (1094)
Q Consensus 829 gs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~ 908 (1094)
|+.|++|+++|+.....+.-........+|.++.|+|.|.+|+.|....++++||+++-+ |+...
T Consensus 190 ~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q--cfvsa------------- 254 (430)
T KOG0640|consen 190 GSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ--CFVSA------------- 254 (430)
T ss_pred ccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEecccee--Eeeec-------------
Confidence 999999999999765222222222346789999999999999999999999999999853 22111
Q ss_pred ceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCC-CCeE
Q 001349 909 SILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKA-NPVH 985 (1094)
Q Consensus 909 ~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~-~~V~ 985 (1094)
.|+.+ |.+.|+++.+++ ...++|+.||.|++||-.+++++..+. ..|. ..|.
T Consensus 255 -----nPd~q---------------ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~-----~AH~gsevc 309 (430)
T KOG0640|consen 255 -----NPDDQ---------------HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIG-----NAHGGSEVC 309 (430)
T ss_pred -----Ccccc---------------cccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHH-----hhcCCceee
Confidence 12211 234455555543 237899999999999999998885433 2344 5799
Q ss_pred EEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCC------EEEEEEeC--CEEEEEE-cCCeEEEEECCCCcEE
Q 001349 986 ALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSE------VRAMVVSS--ELVYLGC-KGGTVEIWDQKRQIRI 1056 (1094)
Q Consensus 986 sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~------v~~l~~sp--d~l~sgs-~dg~I~vwd~~t~~~~ 1056 (1094)
+..|..++.|+.+.+.|. .+++|.+.+++++..+.+.+. -+...|+. |+++.-. ..+.+.-||.+++..+
T Consensus 310 Sa~Ftkn~kyiLsSG~DS-~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~ 388 (430)
T KOG0640|consen 310 SAVFTKNGKYILSSGKDS-TVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRV 388 (430)
T ss_pred eEEEccCCeEEeecCCcc-eeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhh
Confidence 999999999999999985 999999999999998874311 22333443 3655544 4578999999999888
Q ss_pred EEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1057 ETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1057 ~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
..+..||.+.+..+.-||.+..++||+.|-.+++|-
T Consensus 389 ~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 389 ALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred hhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 888789999999999999999999999999999994
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=218.18 Aligned_cols=275 Identities=16% Similarity=0.210 Sum_probs=211.0
Q ss_pred hccccccccccCcEEEEeeC-----CCCeEEEeCC--cceeecc--cCCCcEEEEEEeCC---EEEEEECCCeEEEEecC
Q 001349 774 ELRKYSPLAFEMVKVLSNGH-----DSSADFWNHR--ELVHVDS--SENGKVLSIACFRD---KIFSGHSDGTIKVWTGR 841 (1094)
Q Consensus 774 ~~~~~~~~~~d~~~l~s~s~-----dg~I~vWd~~--~~~~~~~--~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~ 841 (1094)
.-.+++|+-..--.++++.. .|++.|-+.. ..+.... .-.+.+..++|+++ .+++++.||++++||..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 34456666554445555432 4677777774 2232222 24688999999984 99999999999999965
Q ss_pred CCcceeEEEecccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeE
Q 001349 842 GSILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGI 920 (1094)
Q Consensus 842 t~~~~~~~~l~~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l 920 (1094)
.. ..++..+++|...|.++.|++ ++..++++|.|+|||+|+...++ .......+...|.... |+|..
T Consensus 92 ~~-s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~-Sv~Tf~gh~~~Iy~a~-------~sp~~--- 159 (311)
T KOG0277|consen 92 MP-SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN-SVQTFNGHNSCIYQAA-------FSPHI--- 159 (311)
T ss_pred CC-CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc-ceEeecCCccEEEEEe-------cCCCC---
Confidence 43 368999999999999999998 67788899999999999998764 1122233455555554 44433
Q ss_pred EEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEe-CCccEEEEE
Q 001349 921 KVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVH-NGLVYTAST 999 (1094)
Q Consensus 921 ~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs-~~~~~las~ 999 (1094)
++.+++++.||++++||++..... ..+..|...|.+..|+ -+...++++
T Consensus 160 ------------------------~nlfas~Sgd~~l~lwdvr~~gk~------~~i~ah~~Eil~cdw~ky~~~vl~Tg 209 (311)
T KOG0277|consen 160 ------------------------PNLFASASGDGTLRLWDVRSPGKF------MSIEAHNSEILCCDWSKYNHNVLATG 209 (311)
T ss_pred ------------------------CCeEEEccCCceEEEEEecCCCce------eEEEeccceeEeecccccCCcEEEec
Confidence 346899999999999999865333 3467788899999997 467788888
Q ss_pred ECCCCEEEEEECCCC-eEEEEec-CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCc-EEEEecccCCcceEEEEEc
Q 001349 1000 SLDGAAVKMWSTSNY-NMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQI-RIETLQTGTSGKVQCMALD 1073 (1094)
Q Consensus 1000 s~Dg~~I~iwd~~~~-~~~~~~~-~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~-~~~~l~~~h~~~I~~l~~S 1073 (1094)
+.|+ .|+.||+++. .++..+. |+-.|..+.|||. .+++++.|-+++|||...+. .+.+. ..|...|..+.||
T Consensus 210 ~vd~-~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~-~~HtEFv~g~Dws 287 (311)
T KOG0277|consen 210 GVDN-LVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETV-DHHTEFVCGLDWS 287 (311)
T ss_pred CCCc-eEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhh-hccceEEeccccc
Confidence 8886 9999999974 4556665 7788999999997 79999999999999998654 44444 5799999999999
Q ss_pred C-CCCEEEEEeCCCcEEEEe
Q 001349 1074 D-NEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1074 p-dg~~L~sgs~DG~I~iWd 1092 (1094)
+ +..++++++.|+.++||+
T Consensus 288 ~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 288 LFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred cccCceeeecccccceeeec
Confidence 8 557899999999999997
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-24 Score=227.52 Aligned_cols=243 Identities=21% Similarity=0.329 Sum_probs=193.6
Q ss_pred ccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecC---CCEEEEEeCCCcEEEEECCC
Q 001349 810 SSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS---GEMLYSGSLDKTARVWSIGN 886 (1094)
Q Consensus 810 ~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspd---g~~LaSgs~DgtI~vWdi~~ 886 (1094)
..|.+.|.++.-.++.|+||++||++++||..+. ...++.||+++|.+++|.-. ...++++|.|.++++|.++.
T Consensus 102 ~~hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk---~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 102 FLHDDWVSSVKGASKWILTGSYDGTSRIWDLKGK---SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred ccchhhhhhhcccCceEEEeecCCeeEEEecCCc---eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 3589999999999899999999999999999875 88899999999999888643 33699999999999999988
Q ss_pred CceEEE---EecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECC
Q 001349 887 EEIHCV---QVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA 963 (1094)
Q Consensus 887 ~~~~~~---~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~ 963 (1094)
+..... ....|+..|.++. ..++|.. +++|+.|.+|.+|+..
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVs-------v~~sgtr----------------------------~~SgS~D~~lkiWs~~ 223 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVS-------VDSSGTR----------------------------FCSGSWDTMLKIWSVE 223 (423)
T ss_pred chhhhhHHhHhcccccceeEEE-------ecCCCCe----------------------------EEeecccceeeecccC
Confidence 762211 1125677777776 6666665 5555556666666521
Q ss_pred CCc-------------------eeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCC
Q 001349 964 TGT-------------------FATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLS 1024 (1094)
Q Consensus 964 ~~~-------------------~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~ 1024 (1094)
+.. ......+...+.||..+|.++.|++ ...+.+++.|- +|+.||+.++..+.++..+.
T Consensus 224 ~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDH-TIk~WDletg~~~~~~~~~k 301 (423)
T KOG0313|consen 224 TDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDH-TIKVWDLETGGLKSTLTTNK 301 (423)
T ss_pred CCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccc-eEEEEEeecccceeeeecCc
Confidence 100 0001112246789999999999988 55678888885 99999999999999999999
Q ss_pred CEEEEEEeCC--EEEEEEcCCeEEEEECCCCc---EEEEecccCCcceEEEEEcCCCC-EEEEEeCCCcEEEEeC
Q 001349 1025 EVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI---RIETLQTGTSGKVQCMALDDNEE-FLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1025 ~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~---~~~~l~~~h~~~I~~l~~Spdg~-~L~sgs~DG~I~iWdl 1093 (1094)
.+.++..+|. ++++|+.|..|++||.+++. ...+| .||.+.|.++.|+|... .|++|+.||++++||+
T Consensus 302 sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~-~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDv 375 (423)
T KOG0313|consen 302 SLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSL-IGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDV 375 (423)
T ss_pred ceeEeecccccceeeecCCCCceeecCCCCCCCceeEEee-ecchhhhhheecCCCCceEEEEEecCCeEEEEEe
Confidence 9999999997 89999999999999998753 44556 69999999999999774 5789999999999997
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-23 Score=224.72 Aligned_cols=265 Identities=23% Similarity=0.346 Sum_probs=224.0
Q ss_pred CcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEE
Q 001349 785 MVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTG 860 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~s 860 (1094)
...+++|+.|..+.++|.. +.+.++.||...|+.+.|+|+ .+++++.|-.|+||..... ........|..+|+.
T Consensus 231 ~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~--s~~~~~~~h~~~V~~ 308 (506)
T KOG0289|consen 231 SSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS--SEPTSSRPHEEPVTG 308 (506)
T ss_pred CCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc--cCcccccccccccee
Confidence 3688999999999999987 678899999999999999996 8999999999999999887 566677889999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecc-cCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCce
Q 001349 861 LAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHD-IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPK 939 (1094)
Q Consensus 861 v~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~-~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~ 939 (1094)
+..+|+|.||++++.||+..+.|+++|...+....+ ..-.+.+.. |+|||-.
T Consensus 309 ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~-------fHpDgLi-------------------- 361 (506)
T KOG0289|consen 309 LSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA-------FHPDGLI-------------------- 361 (506)
T ss_pred eeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee-------EcCCceE--------------------
Confidence 999999999999999999999999998644333332 122344444 8888763
Q ss_pred EEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEE
Q 001349 940 CLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGS 1019 (1094)
Q Consensus 940 ~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~ 1019 (1094)
+.+|..||.|++||+.++... ..|.+|+++|..++|+.+|.|++++..|+ .|++||++.-+...+
T Consensus 362 --------fgtgt~d~~vkiwdlks~~~~------a~Fpght~~vk~i~FsENGY~Lat~add~-~V~lwDLRKl~n~kt 426 (506)
T KOG0289|consen 362 --------FGTGTPDGVVKIWDLKSQTNV------AKFPGHTGPVKAISFSENGYWLATAADDG-SVKLWDLRKLKNFKT 426 (506)
T ss_pred --------EeccCCCceEEEEEcCCcccc------ccCCCCCCceeEEEeccCceEEEEEecCC-eEEEEEehhhcccce
Confidence 778999999999999998866 67889999999999999999999999887 799999998887777
Q ss_pred ecC--CCCEEEEEEeCC--EEEEEEcCCeEEEEECC--CCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1020 LPT--LSEVRAMVVSSE--LVYLGCKGGTVEIWDQK--RQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1020 ~~~--~~~v~~l~~spd--~l~sgs~dg~I~vwd~~--t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
+.. ...+.++.|+.. ++++++.|=.|++++.. +...+..+ ..|.+..+++.|..+.++++++|.|..++++.+
T Consensus 427 ~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~-~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 427 IQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKEL-ADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehh-hhcccccceeeecccceEEeeccchhheEEeec
Confidence 773 346888888776 88888777667776643 56677777 578889999999999999999999999999876
Q ss_pred C
Q 001349 1094 S 1094 (1094)
Q Consensus 1094 s 1094 (1094)
+
T Consensus 506 ~ 506 (506)
T KOG0289|consen 506 T 506 (506)
T ss_pred C
Confidence 4
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=239.56 Aligned_cols=258 Identities=20% Similarity=0.305 Sum_probs=213.7
Q ss_pred EeeCCCCeEEEeCCc--ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecc-cCCCeEEEEEe
Q 001349 790 SNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIRE-HTKAVTGLAIL 864 (1094)
Q Consensus 790 s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~-H~~~V~sv~fs 864 (1094)
.-+....|.+|+... .......+...|+++.|+++ +|++|..+|.|.|||..+. +.+..+.+ |...|.+++|.
T Consensus 192 aValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~--k~~~~~~~~h~~rvg~laW~ 269 (484)
T KOG0305|consen 192 AVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ--KKTRTLRGSHASRVGSLAWN 269 (484)
T ss_pred EEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhc--cccccccCCcCceeEEEecc
Confidence 334556789999873 23333344899999999986 9999999999999999988 77888888 99999999997
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEe
Q 001349 865 QSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV 944 (1094)
Q Consensus 865 pdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s 944 (1094)
+..+.+|+.||.|.++|++..+........|...|..+. |++|+.
T Consensus 270 --~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLk-------ws~d~~-------------------------- 314 (484)
T KOG0305|consen 270 --SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLK-------WSPDGN-------------------------- 314 (484)
T ss_pred --CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeE-------ECCCCC--------------------------
Confidence 678999999999999999987522222445667777776 777776
Q ss_pred CCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC--ccEEEEEECCCCEEEEEECCCCeEEEEecC
Q 001349 945 QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG--LVYTASTSLDGAAVKMWSTSNYNMVGSLPT 1022 (1094)
Q Consensus 945 ~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~--~~~las~s~Dg~~I~iwd~~~~~~~~~~~~ 1022 (1094)
++++|+.|+.+.+||.....+. ..+..|...|..++|+|- +.+...|+..+++|++||+.++..+..+..
T Consensus 315 --~lASGgnDN~~~Iwd~~~~~p~------~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt 386 (484)
T KOG0305|consen 315 --QLASGGNDNVVFIWDGLSPEPK------FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT 386 (484)
T ss_pred --eeccCCCccceEeccCCCcccc------EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc
Confidence 4899999999999999666655 678889999999999873 333333333346999999999999999999
Q ss_pred CCCEEEEEEeCCE--EEE--EEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1023 LSEVRAMVVSSEL--VYL--GCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1023 ~~~v~~l~~spd~--l~s--gs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
++.|.++.|++.+ +++ |..++.|.||+..+.+.+..+ .+|..+|..+++||||..+++|+.|.++++|++
T Consensus 387 gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l-~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 387 GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL-LGHTSRVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee-cCCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence 9999999999983 444 456789999999999999999 699999999999999999999999999999986
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=240.05 Aligned_cols=276 Identities=16% Similarity=0.206 Sum_probs=218.3
Q ss_pred HHHHHHhhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecC
Q 001349 766 KDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR 841 (1094)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~ 841 (1094)
-+.+..|...++...|.+....+++||.|-.|+||+++ .++.++.||-+-|..+.|++. +|+|+|.|.||+||+..
T Consensus 44 i~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq 123 (1202)
T KOG0292|consen 44 IDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ 123 (1202)
T ss_pred HhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEecc
Confidence 34455566677788888889999999999999999998 678889999999999999997 99999999999999999
Q ss_pred CCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEE
Q 001349 842 GSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIK 921 (1094)
Q Consensus 842 t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~ 921 (1094)
++ +++..+.||...|.|..|+|....++|+|-|.||||||+..-..+........+...... +..-.
T Consensus 124 sr--~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~-----------~~~dL 190 (1202)
T KOG0292|consen 124 SR--KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQ-----------GNSDL 190 (1202)
T ss_pred CC--ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccc-----------cchhh
Confidence 99 899999999999999999999999999999999999999763211111111111111100 00001
Q ss_pred EEEeCCeEE--EEcCCCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEE
Q 001349 922 VHLRNGKTK--LLNSSKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTA 997 (1094)
Q Consensus 922 ~~~~~g~i~--l~~~~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~la 997 (1094)
.+..|-.++ +-.|...|+-.+|+| ..|++|+.|..|++|.+...+.... .+..||.++|+++-|||...++.
T Consensus 191 fg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEv----DtcrgH~nnVssvlfhp~q~lIl 266 (1202)
T KOG0292|consen 191 FGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV----DTCRGHYNNVSSVLFHPHQDLIL 266 (1202)
T ss_pred cCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceee----hhhhcccCCcceEEecCccceeE
Confidence 111222232 234788899999998 5699999999999999876554322 46789999999999999999999
Q ss_pred EEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEe
Q 001349 998 STSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETL 1059 (1094)
Q Consensus 998 s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l 1059 (1094)
+.+.|+ +|++||+...+.+++|. .++..+.++.+|. -+++++.|+-+.||.+..-.+...+
T Consensus 267 SnsEDk-sirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v 329 (1202)
T KOG0292|consen 267 SNSEDK-SIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAV 329 (1202)
T ss_pred ecCCCc-cEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEE
Confidence 999985 99999999999999998 5788999999999 5777788888888887754444433
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=209.88 Aligned_cols=242 Identities=17% Similarity=0.287 Sum_probs=198.5
Q ss_pred ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 001349 805 LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVW 882 (1094)
Q Consensus 805 ~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vW 882 (1094)
...++..|.++|.++.|+.+ +.++++.|.+|++|+...+ .+++++.+|...|..++.+.|+..+++|+.|+.|.+|
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg--~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG--ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVW 86 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc--ceeeeecCCCceeeeccccccccccccCCCCceEEEE
Confidence 34567789999999999975 9999999999999999999 8999999999999999999999999999999999999
Q ss_pred ECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEEC
Q 001349 883 SIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDL 962 (1094)
Q Consensus 883 di~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl 962 (1094)
|+.+|+. ......|...|+.+. |..+.. .+++|+.|.++++||.
T Consensus 87 DV~TGkv-~Rr~rgH~aqVNtV~-------fNeesS----------------------------Vv~SgsfD~s~r~wDC 130 (307)
T KOG0316|consen 87 DVNTGKV-DRRFRGHLAQVNTVR-------FNEESS----------------------------VVASGSFDSSVRLWDC 130 (307)
T ss_pred EcccCee-eeecccccceeeEEE-------ecCcce----------------------------EEEeccccceeEEEEc
Confidence 9999962 222334455566655 433333 3889999999999999
Q ss_pred CCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEE
Q 001349 963 ATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGC 1040 (1094)
Q Consensus 963 ~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs 1040 (1094)
++.....+ +.+......|.++..... .+++|+.|| +++.||++.|+....+ -+.+|+++.|++| ...+++
T Consensus 131 RS~s~ePi----Qildea~D~V~Si~v~~h--eIvaGS~DG-tvRtydiR~G~l~sDy-~g~pit~vs~s~d~nc~La~~ 202 (307)
T KOG0316|consen 131 RSRSFEPI----QILDEAKDGVSSIDVAEH--EIVAGSVDG-TVRTYDIRKGTLSSDY-FGHPITSVSFSKDGNCSLASS 202 (307)
T ss_pred ccCCCCcc----chhhhhcCceeEEEeccc--EEEeeccCC-cEEEEEeecceeehhh-cCCcceeEEecCCCCEEEEee
Confidence 98765432 344445577888887644 567888897 9999999998764332 4678999999998 788999
Q ss_pred cCCeEEEEECCCCcEEEEecccCCcc--eEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1041 KGGTVEIWDQKRQIRIETLQTGTSGK--VQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1041 ~dg~I~vwd~~t~~~~~~l~~~h~~~--I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
-|+++++.|..+|+.+..++ ||... =...+++.....+++|++||.|++||+
T Consensus 203 l~stlrLlDk~tGklL~sYk-Ghkn~eykldc~l~qsdthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 203 LDSTLRLLDKETGKLLKSYK-GHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred ccceeeecccchhHHHHHhc-ccccceeeeeeeecccceeEEeccCCceEEEEEe
Confidence 99999999999999999994 88763 345567777789999999999999997
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=229.59 Aligned_cols=249 Identities=20% Similarity=0.293 Sum_probs=204.9
Q ss_pred CCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEec-CCCE
Q 001349 795 SSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ-SGEM 869 (1094)
Q Consensus 795 g~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fsp-dg~~ 869 (1094)
-.+.+|+.. .....+......|.++.|-.| +++.|+..|.|+|+|..+. ..++.+.+|+.+|..+.|+| ++..
T Consensus 48 ~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r--~iLR~~~ah~apv~~~~f~~~d~t~ 125 (487)
T KOG0310|consen 48 VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR--VILRQLYAHQAPVHVTKFSPQDNTM 125 (487)
T ss_pred cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH--HHHHHHhhccCceeEEEecccCCeE
Confidence 367888876 345556677899999999976 9999999999999997776 67888999999999999999 5778
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEE
Q 001349 870 LYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVY 949 (1094)
Q Consensus 870 LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~ 949 (1094)
+++|++|+.+++||+.+... ......|.+.|.+.+ |+|.... .++
T Consensus 126 l~s~sDd~v~k~~d~s~a~v-~~~l~~htDYVR~g~-------~~~~~~h---------------------------ivv 170 (487)
T KOG0310|consen 126 LVSGSDDKVVKYWDLSTAYV-QAELSGHTDYVRCGD-------ISPANDH---------------------------IVV 170 (487)
T ss_pred EEecCCCceEEEEEcCCcEE-EEEecCCcceeEeec-------cccCCCe---------------------------EEE
Confidence 89999999999999999642 333444445555444 3333222 489
Q ss_pred EEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCC-CeEEEEec-CCCCEE
Q 001349 950 CGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN-YNMVGSLP-TLSEVR 1027 (1094)
Q Consensus 950 sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~-~~~~~~~~-~~~~v~ 1027 (1094)
+|+.||.|++||++..... ..-..|..+|.++.+-|.+..+++++ |..|++||+.+ ++.+..+. |+..|+
T Consensus 171 tGsYDg~vrl~DtR~~~~~------v~elnhg~pVe~vl~lpsgs~iasAg--Gn~vkVWDl~~G~qll~~~~~H~KtVT 242 (487)
T KOG0310|consen 171 TGSYDGKVRLWDTRSLTSR------VVELNHGCPVESVLALPSGSLIASAG--GNSVKVWDLTTGGQLLTSMFNHNKTVT 242 (487)
T ss_pred ecCCCceEEEEEeccCCce------eEEecCCCceeeEEEcCCCCEEEEcC--CCeEEEEEecCCceehhhhhcccceEE
Confidence 9999999999999987422 23346889999999999999999987 56899999985 45555555 999999
Q ss_pred EEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEE
Q 001349 1028 AMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQA 1090 (1094)
Q Consensus 1028 ~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~i 1090 (1094)
|+.+..+ .+++|+-|+.|+|||+.+.+.+..+. ..++|.+++.+||++.++.|..||.+.+
T Consensus 243 cL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~--~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 243 CLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK--YPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred EEEeecCCceEeecccccceEEEEccceEEEEeee--cccceeeEEecCCCceEEEecccceeee
Confidence 9999986 89999999999999999999999884 7789999999999999999999998765
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=248.12 Aligned_cols=281 Identities=13% Similarity=0.164 Sum_probs=225.9
Q ss_pred cccccccCcEEEEee--CCCCeEEEeCCc--------------ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEe
Q 001349 778 YSPLAFEMVKVLSNG--HDSSADFWNHRE--------------LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWT 839 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s--~dg~I~vWd~~~--------------~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd 839 (1094)
...+.+|+.+++||| .||.++||+... .+.....|.+.|+|+.|++| +||+|+.|+.|.||+
T Consensus 18 SIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~ 97 (942)
T KOG0973|consen 18 SIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWE 97 (942)
T ss_pred EEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEee
Confidence 466788999999999 999999998752 23345679999999999998 999999999999998
Q ss_pred cCC----------C------cceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCcccee
Q 001349 840 GRG----------S------ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQN 903 (1094)
Q Consensus 840 ~~t----------~------~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~ 903 (1094)
... | .++++..+.+|.+.|..+.|+|++.+|+++|.|++|.|||..+.+ .......|.+.|..
T Consensus 98 ~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~-~~~vl~~H~s~VKG 176 (942)
T KOG0973|consen 98 RAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFE-LLKVLRGHQSLVKG 176 (942)
T ss_pred ecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccce-eeeeeecccccccc
Confidence 772 1 356888999999999999999999999999999999999999873 33344456777887
Q ss_pred eeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCC
Q 001349 904 LAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANP 983 (1094)
Q Consensus 904 v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~ 983 (1094)
+. |.|-|++ +++-+.|++|++|++.+-........+..-..-..-
T Consensus 177 vs-------~DP~Gky----------------------------~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~ 221 (942)
T KOG0973|consen 177 VS-------WDPIGKY----------------------------FASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTF 221 (942)
T ss_pred eE-------ECCccCe----------------------------eeeecCCceEEEEEcccceeeEeeccchhhCCCcce
Confidence 77 8888876 667778888888886654444333322221223345
Q ss_pred eEEEEEeCCccEEEEEEC---CCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC-------------------EEEEEE
Q 001349 984 VHALQVHNGLVYTASTSL---DGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE-------------------LVYLGC 1040 (1094)
Q Consensus 984 V~sl~fs~~~~~las~s~---Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd-------------------~l~sgs 1040 (1094)
+..+.|+|||.++++... .+.++.|.+-.+++.-..+- |..++.++.|+|. .+++|+
T Consensus 222 f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS 301 (942)
T KOG0973|consen 222 FLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS 301 (942)
T ss_pred eeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEec
Confidence 788999999999998632 12489999988888766666 7889999999862 467899
Q ss_pred cCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1041 KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1041 ~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
.|++|.||.....+++.....-....|.+++|+|||-.|+++|.||+|.++.++
T Consensus 302 qDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 302 QDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred CCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence 999999999999888887755556689999999999999999999999998763
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=241.22 Aligned_cols=242 Identities=14% Similarity=0.160 Sum_probs=182.8
Q ss_pred eeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcc------eeEEEecccCCCeE
Q 001349 791 NGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSIL------HLIQQIREHTKAVT 859 (1094)
Q Consensus 791 ~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~------~~~~~l~~H~~~V~ 859 (1094)
|+.++.|++|+.. .....+.+|.+.|.+++|+|+ +|+||+.||+|+|||+.++.. .++..+.+|.+.|+
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 6678999999976 455678899999999999983 999999999999999976421 23456789999999
Q ss_pred EEEEecCCCE-EEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCc
Q 001349 860 GLAILQSGEM-LYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYP 938 (1094)
Q Consensus 860 sv~fspdg~~-LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v 938 (1094)
+++|+|++.. +++++.||+|+|||+.+++... ...+...|.++. |+|+|..
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~--~i~~~~~V~Sls-------wspdG~l------------------- 181 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAF--QINMPKKLSSLK-------WNIKGNL------------------- 181 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEE--EEecCCcEEEEE-------ECCCCCE-------------------
Confidence 9999998875 5799999999999999875322 222345666666 7777764
Q ss_pred eEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEE-----EEeCCccEEEEEECCC---CEEEEEE
Q 001349 939 KCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHAL-----QVHNGLVYTASTSLDG---AAVKMWS 1010 (1094)
Q Consensus 939 ~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl-----~fs~~~~~las~s~Dg---~~I~iwd 1010 (1094)
+++++.|+.|++||++++..+ ..+.+|.+.+.+. .|++++.++++++.|+ ++|+|||
T Consensus 182 ---------Lat~s~D~~IrIwD~Rsg~~i------~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWD 246 (568)
T PTZ00420 182 ---------LSGTCVGKHMHIIDPRKQEIA------SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWD 246 (568)
T ss_pred ---------EEEEecCCEEEEEECCCCcEE------EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEE
Confidence 777889999999999999877 4556777654433 3457888888887764 4799999
Q ss_pred CCC-CeEEEEecCCCCEEE--EEEeCC---EEEEEEcCCeEEEEECCCCcEEEEec-ccCCcceEEEEEcCCC
Q 001349 1011 TSN-YNMVGSLPTLSEVRA--MVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQ-TGTSGKVQCMALDDNE 1076 (1094)
Q Consensus 1011 ~~~-~~~~~~~~~~~~v~~--l~~spd---~l~sgs~dg~I~vwd~~t~~~~~~l~-~~h~~~I~~l~~Spdg 1076 (1094)
+++ +.++..+.+...... ..+.++ ++++|+.|++|++|++..+.. ..+. ..+..++.+++|.|+.
T Consensus 247 lr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 247 LKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred CCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE-EeecccccCCCccceEEcccc
Confidence 995 566766654333222 234443 788999999999999987753 3332 2355688999999965
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.6e-23 Score=259.44 Aligned_cols=254 Identities=12% Similarity=0.212 Sum_probs=198.8
Q ss_pred CCCeEEEeCCcce-------eecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCc------ceeEEEecccCCCe
Q 001349 794 DSSADFWNHRELV-------HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI------LHLIQQIREHTKAV 858 (1094)
Q Consensus 794 dg~I~vWd~~~~~-------~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~------~~~~~~l~~H~~~V 858 (1094)
+|.+++|+..... ..+..|.+.|++++|+|+ ++++|+.||+|+|||..+.. ......+. +...|
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 5667778776321 123458999999999996 99999999999999975420 01223333 45679
Q ss_pred EEEEEec-CCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEee-CCCeEEEEEeCCeEEEEcCCC
Q 001349 859 TGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP-QGAGIKVHLRNGKTKLLNSSK 936 (1094)
Q Consensus 859 ~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fsp-dg~~l~~~~~~g~i~l~~~~~ 936 (1094)
.+++|++ ++.+|++++.||+|++||+.+++. ......|...|.++. |+| ++.
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~-~~~~~~H~~~V~~l~-------~~p~~~~------------------ 589 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQL-VTEMKEHEKRVWSID-------YSSADPT------------------ 589 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeE-EEEecCCCCCEEEEE-------EcCCCCC------------------
Confidence 9999987 578999999999999999988642 222334556666666 554 333
Q ss_pred CceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEe-CCccEEEEEECCCCEEEEEECCCCe
Q 001349 937 YPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVH-NGLVYTASTSLDGAAVKMWSTSNYN 1015 (1094)
Q Consensus 937 ~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs-~~~~~las~s~Dg~~I~iwd~~~~~ 1015 (1094)
.+++|+.||+|++||++++..... +..+ ..|.++.|+ +++.++++++.|| .|++||++++.
T Consensus 590 ----------~L~Sgs~Dg~v~iWd~~~~~~~~~------~~~~-~~v~~v~~~~~~g~~latgs~dg-~I~iwD~~~~~ 651 (793)
T PLN00181 590 ----------LLASGSDDGSVKLWSINQGVSIGT------IKTK-ANICCVQFPSESGRSLAFGSADH-KVYYYDLRNPK 651 (793)
T ss_pred ----------EEEEEcCCCEEEEEECCCCcEEEE------EecC-CCeEEEEEeCCCCCEEEEEeCCC-eEEEEECCCCC
Confidence 488999999999999999887643 3333 578999995 6789999999997 99999998765
Q ss_pred -EEEEec-CCCCEEEEEEeCC-EEEEEEcCCeEEEEECCC------CcEEEEecccCCcceEEEEEcCCCCEEEEEeCCC
Q 001349 1016 -MVGSLP-TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKR------QIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDG 1086 (1094)
Q Consensus 1016 -~~~~~~-~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t------~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG 1086 (1094)
.+..+. |...|.++.|.+. ++++++.|++|++||+.. ..++..+ .+|...++.++|+|++.+|++|+.||
T Consensus 652 ~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~-~gh~~~i~~v~~s~~~~~lasgs~D~ 730 (793)
T PLN00181 652 LPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF-MGHTNVKNFVGLSVSDGYIATGSETN 730 (793)
T ss_pred ccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEE-cCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence 455555 7788999999754 899999999999999974 3567788 58999999999999999999999999
Q ss_pred cEEEEeC
Q 001349 1087 RIQAWGL 1093 (1094)
Q Consensus 1087 ~I~iWdl 1093 (1094)
+|++|+.
T Consensus 731 ~v~iw~~ 737 (793)
T PLN00181 731 EVFVYHK 737 (793)
T ss_pred EEEEEEC
Confidence 9999985
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.3e-24 Score=230.72 Aligned_cols=284 Identities=15% Similarity=0.234 Sum_probs=211.5
Q ss_pred HhhhccccccccccCcEEEEeeCCCCeEEEeCCc-------ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecC
Q 001349 771 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE-------LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR 841 (1094)
Q Consensus 771 ~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~-------~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~ 841 (1094)
.+.+++....+.+.|.+|++||.|.+|++||+.. ........+..|.++.|++. .|++.+....++|+|-.
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRd 244 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRD 244 (641)
T ss_pred CCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccC
Confidence 3445566677778899999999999999999872 22233345678999999984 77777777889999977
Q ss_pred CCcce----------eEEEecccCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCc--eEEEEecccCccceeeeecC
Q 001349 842 GSILH----------LIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEE--IHCVQVHDIKDQIQNLAVSN 908 (1094)
Q Consensus 842 t~~~~----------~~~~l~~H~~~V~sv~fspd-g~~LaSgs~DgtI~vWdi~~~~--~~~~~~~~~~~~V~~v~~~~ 908 (1094)
+..+. -+..-+||...+++.+|+|+ ...++|++.||++||||++..+ ...+...... ...+.+
T Consensus 245 G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~----g~Rv~~ 320 (641)
T KOG0772|consen 245 GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG----GKRVPV 320 (641)
T ss_pred CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCC----CcccCc
Confidence 65210 01122689999999999995 5689999999999999998754 2222222111 111122
Q ss_pred ceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCC--CeEE
Q 001349 909 SILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKAN--PVHA 986 (1094)
Q Consensus 909 ~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~--~V~s 986 (1094)
..++|++||+. |++|+.||+|++||..+......+ ..-..|.. .|+|
T Consensus 321 tsC~~nrdg~~----------------------------iAagc~DGSIQ~W~~~~~~v~p~~---~vk~AH~~g~~Its 369 (641)
T KOG0772|consen 321 TSCAWNRDGKL----------------------------IAAGCLDGSIQIWDKGSRTVRPVM---KVKDAHLPGQDITS 369 (641)
T ss_pred eeeecCCCcch----------------------------hhhcccCCceeeeecCCcccccce---EeeeccCCCCceeE
Confidence 23347777774 788999999999998554332111 23346765 8999
Q ss_pred EEEeCCccEEEEEECCCCEEEEEECCCCe-EEEEec---CCCCEEEEEEeCC--EEEEEEc------CCeEEEEECCCCc
Q 001349 987 LQVHNGLVYTASTSLDGAAVKMWSTSNYN-MVGSLP---TLSEVRAMVVSSE--LVYLGCK------GGTVEIWDQKRQI 1054 (1094)
Q Consensus 987 l~fs~~~~~las~s~Dg~~I~iwd~~~~~-~~~~~~---~~~~v~~l~~spd--~l~sgs~------dg~I~vwd~~t~~ 1054 (1094)
+.|+.++.++++-+.|+ ++++||++..+ ++.... ....-+.++|||+ ++++|+. .|++.+||..+..
T Consensus 370 i~FS~dg~~LlSRg~D~-tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d 448 (641)
T KOG0772|consen 370 ISFSYDGNYLLSRGFDD-TLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD 448 (641)
T ss_pred EEeccccchhhhccCCC-ceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee
Confidence 99999999999999997 99999999754 444443 3456678999999 7777753 5789999999999
Q ss_pred EEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001349 1055 RIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1055 ~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iW 1091 (1094)
.+..+. -....|..+.|+|.-+.|+.|+.||++++|
T Consensus 449 ~v~ki~-i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 449 TVYKID-ISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred eEEEec-CCCceEEEEeecchhhheeeecCCCceEEE
Confidence 999884 446689999999999999999999999986
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-22 Score=239.06 Aligned_cols=255 Identities=16% Similarity=0.219 Sum_probs=187.7
Q ss_pred cccccCcEEEEeeCCCCeEEEeCCc---------------ceeecccCCCcEEEEEEeC-C--EEEEEECCCeEEEEecC
Q 001349 780 PLAFEMVKVLSNGHDSSADFWNHRE---------------LVHVDSSENGKVLSIACFR-D--KIFSGHSDGTIKVWTGR 841 (1094)
Q Consensus 780 ~~~~d~~~l~s~s~dg~I~vWd~~~---------------~~~~~~~h~~~V~~l~fsp-d--~LaSgs~Dg~I~vWd~~ 841 (1094)
....|+..+++++.+.....|+... ....+.+|.+.|++++|+| + +|++|+.||+|++||+.
T Consensus 27 ~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~ 106 (493)
T PTZ00421 27 TALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIP 106 (493)
T ss_pred cccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecC
Confidence 3444555556666666555665321 1124678999999999998 4 89999999999999997
Q ss_pred CCcc-----eeEEEecccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEee
Q 001349 842 GSIL-----HLIQQIREHTKAVTGLAILQSG-EMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP 915 (1094)
Q Consensus 842 t~~~-----~~~~~l~~H~~~V~sv~fspdg-~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fsp 915 (1094)
++.. .++..+.+|...|.+++|+|++ ++|++|+.|++|+|||+.+++.. .....+...|.++. |+|
T Consensus 107 ~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~-~~l~~h~~~V~sla-------~sp 178 (493)
T PTZ00421 107 EEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAV-EVIKCHSDQITSLE-------WNL 178 (493)
T ss_pred CCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEE-EEEcCCCCceEEEE-------EEC
Confidence 6521 3567889999999999999975 79999999999999999987522 22234566677776 777
Q ss_pred CCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCC-eEEEEEeCCcc
Q 001349 916 QGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANP-VHALQVHNGLV 994 (1094)
Q Consensus 916 dg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~-V~sl~fs~~~~ 994 (1094)
+|.. +++|+.|+.|++||+++++.+ ..+.+|... +..+.|.+++.
T Consensus 179 dG~l----------------------------Latgs~Dg~IrIwD~rsg~~v------~tl~~H~~~~~~~~~w~~~~~ 224 (493)
T PTZ00421 179 DGSL----------------------------LCTTSKDKKLNIIDPRDGTIV------SSVEAHASAKSQRCLWAKRKD 224 (493)
T ss_pred CCCE----------------------------EEEecCCCEEEEEECCCCcEE------EEEecCCCCcceEEEEcCCCC
Confidence 7763 889999999999999999876 345566654 34667777766
Q ss_pred EEEEEEC---CCCEEEEEECCCCe-EEEEec--CCCCEEEEEEeCC--EEEEEE-cCCeEEEEECCCCcEEEEecccCCc
Q 001349 995 YTASTSL---DGAAVKMWSTSNYN-MVGSLP--TLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQKRQIRIETLQTGTSG 1065 (1094)
Q Consensus 995 ~las~s~---Dg~~I~iwd~~~~~-~~~~~~--~~~~v~~l~~spd--~l~sgs-~dg~I~vwd~~t~~~~~~l~~~h~~ 1065 (1094)
.+++++. .++.|++||+++.. +..... ....+....|+++ ++++|+ .||.|++||+.+++.+......+..
T Consensus 225 ~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~ 304 (493)
T PTZ00421 225 LIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVE 304 (493)
T ss_pred eEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCC
Confidence 6666542 12599999998754 343333 2345556677777 677776 5999999999999988777555666
Q ss_pred ceEEEEEcCCC
Q 001349 1066 KVQCMALDDNE 1076 (1094)
Q Consensus 1066 ~I~~l~~Spdg 1076 (1094)
++.+++|.|.-
T Consensus 305 ~~~g~~~~pk~ 315 (493)
T PTZ00421 305 PHKGLCMMPKW 315 (493)
T ss_pred CCcceEecccc
Confidence 78889888843
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=214.02 Aligned_cols=270 Identities=14% Similarity=0.209 Sum_probs=217.5
Q ss_pred ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 001349 805 LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVW 882 (1094)
Q Consensus 805 ~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vW 882 (1094)
-...+..|++.|.+++.+|+ +++||+.|..-.+|++.++ .....+.+|.+.|+++.|+.||.+||||+.+|.|+||
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g--e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG--EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCC--cceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence 35678899999999999996 9999999999999999999 6888999999999999999999999999999999999
Q ss_pred ECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCC------------CceEEEEeC--CEE
Q 001349 883 SIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSK------------YPKCLALVQ--GKV 948 (1094)
Q Consensus 883 di~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~------------~v~~l~~s~--~~l 948 (1094)
+..++..+.... ..+..+. .+.|+|-+..++.++.||.+-.|.... .+++=.|.| .++
T Consensus 134 ~~stg~~~~~~~----~e~~die----Wl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~ 205 (399)
T KOG0296|consen 134 KVSTGGEQWKLD----QEVEDIE----WLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRI 205 (399)
T ss_pred EcccCceEEEee----cccCceE----EEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceE
Confidence 999986444332 2233333 234899999999999999999998654 233333333 459
Q ss_pred EEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecC------
Q 001349 949 YCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT------ 1022 (1094)
Q Consensus 949 ~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~------ 1022 (1094)
++|..||+|++||+.++.+....... .....+++.++..+..+..|+.++ .+++-+..+|+.+.....
T Consensus 206 ~tgy~dgti~~Wn~ktg~p~~~~~~~-----e~~~~~~~~~~~~~~~~~~g~~e~-~~~~~~~~sgKVv~~~n~~~~~l~ 279 (399)
T KOG0296|consen 206 LTGYDDGTIIVWNPKTGQPLHKITQA-----EGLELPCISLNLAGSTLTKGNSEG-VACGVNNGSGKVVNCNNGTVPELK 279 (399)
T ss_pred EEEecCceEEEEecCCCceeEEeccc-----ccCcCCccccccccceeEeccCCc-cEEEEccccceEEEecCCCCcccc
Confidence 99999999999999999988554322 134567788888888888888886 788888878777665542
Q ss_pred ---CCC---EEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1023 ---LSE---VRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1023 ---~~~---v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
... |.++.++.. +.++|+-||+|.|||....++.+.+ .|...|+.+.|-+ ..+|++++.||+|+.||.
T Consensus 280 ~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c--~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDa 355 (399)
T KOG0296|consen 280 PSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC--EHEDGVTKLKWLN-TDYLLTACANGKVRQWDA 355 (399)
T ss_pred ccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec--cCCCceEEEEEcC-cchheeeccCceEEeeec
Confidence 222 444455555 7889999999999999998877776 4888999999988 789999999999999984
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-24 Score=224.71 Aligned_cols=261 Identities=15% Similarity=0.217 Sum_probs=205.5
Q ss_pred ecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 001349 808 VDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSI 884 (1094)
Q Consensus 808 ~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi 884 (1094)
.+.||.+.|.|++=+|+ .++||+.||.|++||+.+. .++.+++.|.+.|..+++.. ..++++|+|++|+.|.+
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR--~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR--ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhh--hhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 45789999999999996 7999999999999999998 79999999999999999976 67889999999999998
Q ss_pred CCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC------------CCCceEEEEeC---CEEE
Q 001349 885 GNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS------------SKYPKCLALVQ---GKVY 949 (1094)
Q Consensus 885 ~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~------------~~~v~~l~~s~---~~l~ 949 (1094)
+.. .......+..+..+........|...|.. +.+|+. ...+.++.|++ +.|+
T Consensus 137 ~~~---p~~tilg~s~~~gIdh~~~~~~FaTcGe~---------i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 137 DGP---PLHTILGKSVYLGIDHHRKNSVFATCGEQ---------IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILA 204 (433)
T ss_pred cCC---cceeeeccccccccccccccccccccCce---------eeecccccCCccceeecCCCceeEEecCCCcchhee
Confidence 873 22333334444444433333335555544 445553 24578888886 3488
Q ss_pred EEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCe-EEEEec-CCCCEE
Q 001349 950 CGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN-MVGSLP-TLSEVR 1027 (1094)
Q Consensus 950 sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~-~~~~~~-~~~~v~ 1027 (1094)
++..|++|.+||++++.++.... -...-+.++|+|+...+++++.|- .+..||++... ++..+. |.+.|.
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi-------~~mRTN~IswnPeafnF~~a~ED~-nlY~~DmR~l~~p~~v~~dhvsAV~ 276 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVI-------LTMRTNTICWNPEAFNFVAANEDH-NLYTYDMRNLSRPLNVHKDHVSAVM 276 (433)
T ss_pred eeccCCceEEEecccCCccceee-------eeccccceecCccccceeeccccc-cceehhhhhhcccchhhcccceeEE
Confidence 88899999999999998874211 123457899999888888888774 99999998643 444444 778999
Q ss_pred EEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1028 AMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1028 ~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
.++|||. -+++||.|.+|+||..+.+..-..+.......|.++.||.|.+++++||+|+.|++|.
T Consensus 277 dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 277 DVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred EeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 9999998 6999999999999999988765555333344799999999999999999999999996
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-23 Score=240.33 Aligned_cols=241 Identities=17% Similarity=0.289 Sum_probs=193.1
Q ss_pred ecc-cCCCcEEEEEEeCC--EEEEEECCCeEEEEecCC--------------------------------C---------
Q 001349 808 VDS-SENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG--------------------------------S--------- 843 (1094)
Q Consensus 808 ~~~-~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t--------------------------------~--------- 843 (1094)
... .|.+.|+++.||+| +||+|+.||.|+||.+.. .
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 344 78999999999987 999999999999997654 0
Q ss_pred -----------------cceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeee
Q 001349 844 -----------------ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAV 906 (1094)
Q Consensus 844 -----------------~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~ 906 (1094)
..+++..+.||.+.|..+.||.+ ++|+|+|.|+|||+|++... .|+..+.|.+-|++++
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~--~CL~~F~HndfVTcVa- 416 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRK--ECLKVFSHNDFVTCVA- 416 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCc--ceeeEEecCCeeEEEE-
Confidence 01345566899999999999964 68999999999999999875 5666665566666655
Q ss_pred cCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEE
Q 001349 907 SNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHA 986 (1094)
Q Consensus 907 ~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~s 986 (1094)
|.|-.. +++++|+-||.|++|++...+...... -..-|++
T Consensus 417 ------FnPvDD---------------------------ryFiSGSLD~KvRiWsI~d~~Vv~W~D-------l~~lITA 456 (712)
T KOG0283|consen 417 ------FNPVDD---------------------------RYFISGSLDGKVRLWSISDKKVVDWND-------LRDLITA 456 (712)
T ss_pred ------ecccCC---------------------------CcEeecccccceEEeecCcCeeEeehh-------hhhhhee
Confidence 444332 469999999999999999887764322 2267999
Q ss_pred EEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec---C------CCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCc
Q 001349 987 LQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---T------LSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQI 1054 (1094)
Q Consensus 987 l~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~---~------~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~ 1054 (1094)
++|.|+|.+.+.|+.+| .+++|++...+....+. + +..|+++.|.|. .+++.+.|..|||||..+..
T Consensus 457 vcy~PdGk~avIGt~~G-~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~ 535 (712)
T KOG0283|consen 457 VCYSPDGKGAVIGTFNG-YCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD 535 (712)
T ss_pred EEeccCCceEEEEEecc-EEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchh
Confidence 99999999999999997 99999999887766553 1 347999999864 68899999999999998888
Q ss_pred EEEEecccCCc-ceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1055 RIETLQTGTSG-KVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1055 ~~~~l~~~h~~-~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
++..|+..+.. .-....|+.||++|+++++|..|+||++
T Consensus 536 lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 536 LVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred hhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence 88888633332 3456789999999999999999999986
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.6e-23 Score=242.43 Aligned_cols=232 Identities=28% Similarity=0.473 Sum_probs=202.7
Q ss_pred cCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEE-ecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCce
Q 001349 811 SENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQ-IREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEI 889 (1094)
Q Consensus 811 ~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~-l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~ 889 (1094)
.|...+.+..|.++++++++.|++|++||..++ ..+.. +.||.+.|++++|..-+.++++|+.|.++++||..+|+.
T Consensus 206 ~~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~--~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 206 TDDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNG--YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC 283 (537)
T ss_pred cCcchhhhheeecCeEEecCCCceeEEeecccc--eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE
Confidence 367788999999889999999999999999998 66666 999999999999987789999999999999999999852
Q ss_pred EEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeE
Q 001349 890 HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFAT 969 (1094)
Q Consensus 890 ~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~ 969 (1094)
.... +.|...+.++...+..+++|+.|.+|++|++.++..+
T Consensus 284 --~~~l------------------------------------~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l- 324 (537)
T KOG0274|consen 284 --THSL------------------------------------QGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACL- 324 (537)
T ss_pred --EEEe------------------------------------cCCCceEEEEEccCceEeeccCCceEEEEeccCcceE-
Confidence 2221 1233445566666667888999999999999999998
Q ss_pred EeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeC-CEEEEEEcCCeEEE
Q 001349 970 IQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSS-ELVYLGCKGGTVEI 1047 (1094)
Q Consensus 970 ~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~sp-d~l~sgs~dg~I~v 1047 (1094)
..+.+|..+|+++..+ +.++++++.|+ +|++||+.+++++.++. |...|.++.+.+ +.+++|+.|++|++
T Consensus 325 -----~l~~~h~~~V~~v~~~--~~~lvsgs~d~-~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~Ikv 396 (537)
T KOG0274|consen 325 -----NLLRGHTGPVNCVQLD--EPLLVSGSYDG-TVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKV 396 (537)
T ss_pred -----EEeccccccEEEEEec--CCEEEEEecCc-eEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEe
Confidence 5566799999999988 77889999997 99999999999999999 789999999999 89999999999999
Q ss_pred EECCCC-cEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1048 WDQKRQ-IRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1048 wd~~t~-~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
||+.++ +++.++ .+|.+.+.++.+ .+++|++++.||+|++||.+
T Consensus 397 Wdl~~~~~c~~tl-~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~ 441 (537)
T KOG0274|consen 397 WDLRTKRKCIHTL-QGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAE 441 (537)
T ss_pred ecCCchhhhhhhh-cCCccccccccc--ccceeEeccccccEEEeecc
Confidence 999999 999999 589988877766 47899999999999999964
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-22 Score=209.04 Aligned_cols=259 Identities=17% Similarity=0.262 Sum_probs=208.8
Q ss_pred EEEEeeCCCCeEEEeCC-c-------------ceeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEec
Q 001349 787 KVLSNGHDSSADFWNHR-E-------------LVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIR 852 (1094)
Q Consensus 787 ~l~s~s~dg~I~vWd~~-~-------------~~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~ 852 (1094)
.|+.|++...|.-++.. + ....+..|.+.|++++.+.-++|||+.|-+|+|||+.+. ..+..+-
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~--~qlg~ll 80 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKR--KQLGILL 80 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccch--hhhccee
Confidence 46677777766555443 1 134456799999999999999999999999999999998 7888889
Q ss_pred ccCCCeEEEEEecCCC--EEEEEeCCCcEEEEECCCCceEEEE-ecccCccceeeeecCceEEEeeCCCeEEEEEeCCeE
Q 001349 853 EHTKAVTGLAILQSGE--MLYSGSLDKTARVWSIGNEEIHCVQ-VHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKT 929 (1094)
Q Consensus 853 ~H~~~V~sv~fspdg~--~LaSgs~DgtI~vWdi~~~~~~~~~-~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i 929 (1094)
.|.+.|+++.|.++-. .|++|+.||.|.+|+...- .++. ...|...|+.++ +.|.|+.
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W--~~~~slK~H~~~Vt~ls-------iHPS~KL---------- 141 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW--ELLKSLKAHKGQVTDLS-------IHPSGKL---------- 141 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe--EEeeeecccccccceeE-------ecCCCce----------
Confidence 9999999999998654 8999999999999999874 3332 234566687777 6777763
Q ss_pred EEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEE
Q 001349 930 KLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMW 1009 (1094)
Q Consensus 930 ~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iw 1009 (1094)
.++.+.|+.++.||+.+|+.-.... .. ...+.+.|+|.|.+++..+.+ .|-+|
T Consensus 142 ------------------ALsVg~D~~lr~WNLV~Gr~a~v~~-----L~--~~at~v~w~~~Gd~F~v~~~~--~i~i~ 194 (362)
T KOG0294|consen 142 ------------------ALSVGGDQVLRTWNLVRGRVAFVLN-----LK--NKATLVSWSPQGDHFVVSGRN--KIDIY 194 (362)
T ss_pred ------------------EEEEcCCceeeeehhhcCccceeec-----cC--CcceeeEEcCCCCEEEEEecc--EEEEE
Confidence 4567889999999999998654322 11 233459999999987777766 69999
Q ss_pred ECCCCeEEEEecCCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEE--cCCCCEEEEEeCCC
Q 001349 1010 STSNYNMVGSLPTLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMAL--DDNEEFLVIGTSDG 1086 (1094)
Q Consensus 1010 d~~~~~~~~~~~~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~--Spdg~~L~sgs~DG 1086 (1094)
.+.+-.....+.....+.++.|-.. .+++|.+|+.|.+||..+..+...+ .+|..+|-++.+ .|++.+|+|+|+||
T Consensus 195 q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~-~AH~~RVK~i~~~~~~~~~~lvTaSSDG 273 (362)
T KOG0294|consen 195 QLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEF-LAHENRVKDIASYTNPEHEYLVTASSDG 273 (362)
T ss_pred ecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceee-ecchhheeeeEEEecCCceEEEEeccCc
Confidence 9988777777766677777777655 9999999999999999999988888 599999999985 56789999999999
Q ss_pred cEEEEeCC
Q 001349 1087 RIQAWGLS 1094 (1094)
Q Consensus 1087 ~I~iWdls 1094 (1094)
.|+|||+.
T Consensus 274 ~I~vWd~~ 281 (362)
T KOG0294|consen 274 FIKVWDID 281 (362)
T ss_pred eEEEEEcc
Confidence 99999973
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.4e-24 Score=231.03 Aligned_cols=264 Identities=16% Similarity=0.197 Sum_probs=215.5
Q ss_pred HHhhhccccccccc-cCcEEEEeeCCCCeEEEeCC---cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCC
Q 001349 770 KGLRELRKYSPLAF-EMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS 843 (1094)
Q Consensus 770 ~~~~~~~~~~~~~~-d~~~l~s~s~dg~I~vWd~~---~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~ 843 (1094)
.+|..-+....+.+ .+..+++++.|+.|+||++- .+++++.+|..+|.+++|+++ .+.|++.|+.|++||++||
T Consensus 211 ~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG 290 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETG 290 (503)
T ss_pred cCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccc
Confidence 34444444444444 68899999999999999985 688999999999999999986 9999999999999999999
Q ss_pred cceeEEEecccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCceEEEEe-cccCccceeeeecCceEEEeeCCCeEE
Q 001349 844 ILHLIQQIREHTKAVTGLAILQSG-EMLYSGSLDKTARVWSIGNEEIHCVQV-HDIKDQIQNLAVSNSILCFIPQGAGIK 921 (1094)
Q Consensus 844 ~~~~~~~l~~H~~~V~sv~fspdg-~~LaSgs~DgtI~vWdi~~~~~~~~~~-~~~~~~V~~v~~~~~~~~fspdg~~l~ 921 (1094)
+++..+. -...++++.|+||+ +.+++|+.|+.|+.||+++++ .++. ..+-+.|..+. |.++|+..+
T Consensus 291 --~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k--vvqeYd~hLg~i~~i~-------F~~~g~rFi 358 (503)
T KOG0282|consen 291 --QVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK--VVQEYDRHLGAILDIT-------FVDEGRRFI 358 (503)
T ss_pred --eEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH--HHHHHHhhhhheeeeE-------EccCCceEe
Confidence 7777774 34567999999988 899999999999999999986 2222 23456677776 999999999
Q ss_pred EEEeCCeEEEEcCCC-------------CceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCC--CCe
Q 001349 922 VHLRNGKTKLLNSSK-------------YPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKA--NPV 984 (1094)
Q Consensus 922 ~~~~~g~i~l~~~~~-------------~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~--~~V 984 (1094)
+.+.++.+++|+-.. ...|+..+| +.+++-+.|+.|.+|.+...-. +.....+.||. +.-
T Consensus 359 ssSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r---~nkkK~feGh~vaGys 435 (503)
T KOG0282|consen 359 SSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR---LNKKKRFEGHSVAGYS 435 (503)
T ss_pred eeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccc---cCHhhhhcceeccCce
Confidence 999999999998532 345666654 5588889999999998653322 12225677775 345
Q ss_pred EEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC---EEEEEEcCCeEEEEE
Q 001349 985 HALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWD 1049 (1094)
Q Consensus 985 ~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd---~l~sgs~dg~I~vwd 1049 (1094)
..+.|+||+.++++|..|| .+.+||.++-+.+..+. |...+..+.|+|. .+++++.||.|++||
T Consensus 436 ~~v~fSpDG~~l~SGdsdG-~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCSGDSDG-KVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eeEEEcCCCCeEEeecCCc-cEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 6788999999999999997 99999999999999888 6789999999987 799999999999996
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.2e-22 Score=229.26 Aligned_cols=307 Identities=16% Similarity=0.262 Sum_probs=237.6
Q ss_pred ccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeC--CEEEEEECCCeEEEEecCCCcceeEEEecccCC
Q 001349 781 LAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTK 856 (1094)
Q Consensus 781 ~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fsp--d~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~ 856 (1094)
.+.+-++++.|+.+|.+.+||++ ..++++.++...|+++.-+| |.++.|..+|+|.+++++.+ +.+.+|+...+
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d--kil~sFk~d~g 245 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD--KILMSFKQDWG 245 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccC--cEEEEEEcccc
Confidence 34467789999999999999998 57788899999999999999 79999999999999999999 78899975469
Q ss_pred CeEEEEEecCCC-EEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCc--------------------------
Q 001349 857 AVTGLAILQSGE-MLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNS-------------------------- 909 (1094)
Q Consensus 857 ~V~sv~fspdg~-~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~-------------------------- 909 (1094)
.|++++|..||+ .+++|+..|.+-+||++..++.......|.+.+....+.+.
T Consensus 246 ~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR 325 (910)
T KOG1539|consen 246 RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPR 325 (910)
T ss_pred ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcch
Confidence 999999999987 56677777999999998865333322222222222221111
Q ss_pred -------------eEEEe-eCCCeEEEEEeCCeEEEE-------------------------------------------
Q 001349 910 -------------ILCFI-PQGAGIKVHLRNGKTKLL------------------------------------------- 932 (1094)
Q Consensus 910 -------------~~~fs-pdg~~l~~~~~~g~i~l~------------------------------------------- 932 (1094)
.+.|- .+|..+.....|++.+.+
T Consensus 326 ~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~ 405 (910)
T KOG1539|consen 326 LLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFEN 405 (910)
T ss_pred heeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeeccc
Confidence 01111 233333333333322111
Q ss_pred ----------------------cC------------C------CCceEEEEe--CCEEEEEEcCCeEEEEECCCCceeEE
Q 001349 933 ----------------------NS------------S------KYPKCLALV--QGKVYCGCQDGAIQEIDLATGTFATI 970 (1094)
Q Consensus 933 ----------------------~~------------~------~~v~~l~~s--~~~l~sgs~Dg~I~iwDl~~~~~~~~ 970 (1094)
+. . ..+.++..+ ++..+.|+..|+|-+|++.+|-....
T Consensus 406 ~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~s 485 (910)
T KOG1539|consen 406 AREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKS 485 (910)
T ss_pred chhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecc
Confidence 10 0 123444443 56788899999999999999877633
Q ss_pred eccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEE
Q 001349 971 QTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIW 1048 (1094)
Q Consensus 971 ~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vw 1048 (1094)
+. .-..|..+|+.++.+.-+..+++++.+| .++.||..+..++.++.-+..+.++..+.. .++++.+|-.|+++
T Consensus 486 f~---~~~ah~~~V~gla~D~~n~~~vsa~~~G-ilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vv 561 (910)
T KOG1539|consen 486 FG---DSPAHKGEVTGLAVDGTNRLLVSAGADG-ILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVV 561 (910)
T ss_pred cc---cCccccCceeEEEecCCCceEEEccCcc-eEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEE
Confidence 32 1257999999999999999999999997 999999999999999888888888888765 88899999999999
Q ss_pred ECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1049 DQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1049 d~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
|..+.+.++.| .||.+.|++++|||||++|++++.|++|++||+.
T Consensus 562 D~~t~kvvR~f-~gh~nritd~~FS~DgrWlisasmD~tIr~wDlp 606 (910)
T KOG1539|consen 562 DVVTRKVVREF-WGHGNRITDMTFSPDGRWLISASMDSTIRTWDLP 606 (910)
T ss_pred EchhhhhhHHh-hccccceeeeEeCCCCcEEEEeecCCcEEEEecc
Confidence 99999999999 5999999999999999999999999999999983
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-23 Score=235.31 Aligned_cols=275 Identities=21% Similarity=0.309 Sum_probs=220.6
Q ss_pred ccCcEEEEeeCCCCeEEEeCCc--------ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEec
Q 001349 783 FEMVKVLSNGHDSSADFWNHRE--------LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIR 852 (1094)
Q Consensus 783 ~d~~~l~s~s~dg~I~vWd~~~--------~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~ 852 (1094)
+.+++|+|||.||.|++|++.+ ....+..|.+.|..++...+ .|+|+|.|-+|++|+...+..-++.++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 3466899999999999999862 24556789999999887764 9999999999999999876445888999
Q ss_pred ccCCCeEEEEE-ecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEE
Q 001349 853 EHTKAVTGLAI-LQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL 931 (1094)
Q Consensus 853 ~H~~~V~sv~f-spdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l 931 (1094)
.|.+.|.|+++ -++...+||||.|+.|.+||++++.-..+.... .-.+.++.
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n-~~t~~sl~-------------------------- 167 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN-NVTVNSLG-------------------------- 167 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc-ccccccCC--------------------------
Confidence 99999999999 778999999999999999999987321111100 00000000
Q ss_pred EcCCCCceEEEEeCC--EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEE
Q 001349 932 LNSSKYPKCLALVQG--KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMW 1009 (1094)
Q Consensus 932 ~~~~~~v~~l~~s~~--~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iw 1009 (1094)
-.+...|++++.++. .+++|+..+.+++||.++++.+ .++.||...|..+..++||..+++++.|| +|++|
T Consensus 168 sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~ki------mkLrGHTdNVr~ll~~dDGt~~ls~sSDg-tIrlW 240 (735)
T KOG0308|consen 168 SGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKI------MKLRGHTDNVRVLLVNDDGTRLLSASSDG-TIRLW 240 (735)
T ss_pred CCCccceeeeecCCcceEEEecCcccceEEeccccccce------eeeeccccceEEEEEcCCCCeEeecCCCc-eEEee
Confidence 023455667777664 5889999999999999999887 57779999999999999999999999997 99999
Q ss_pred ECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCc-EEEEecccCCcceEEEEEcCCCCEEEEEeCC
Q 001349 1010 STSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI-RIETLQTGTSGKVQCMALDDNEEFLVIGTSD 1085 (1094)
Q Consensus 1010 d~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~-~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~D 1085 (1094)
|+...+++.++. |...|+++..+|+ .+++|+.||.|+.=|+.+.. ....++ ...+|..+..+.+.+-+-+++.|
T Consensus 241 dLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick--~daPv~~l~~~~~~~~~WvtTtd 318 (735)
T KOG0308|consen 241 DLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICK--EDAPVLKLHLHEHDNSVWVTTTD 318 (735)
T ss_pred eccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeec--CCCchhhhhhccccCCceeeecc
Confidence 999999999988 8888999999998 79999999999999999853 333333 34467888777655556778889
Q ss_pred CcEEEEeC
Q 001349 1086 GRIQAWGL 1093 (1094)
Q Consensus 1086 G~I~iWdl 1093 (1094)
+.|+-|.+
T Consensus 319 s~I~rW~~ 326 (735)
T KOG0308|consen 319 SSIKRWKL 326 (735)
T ss_pred ccceecCC
Confidence 99999864
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-22 Score=227.17 Aligned_cols=253 Identities=23% Similarity=0.386 Sum_probs=205.2
Q ss_pred cCcEEEEeeCCCCeEEEeCC----cceeecccCCCcEEE-EEEeC-C--EEEEEECCCeEEEEecCCCcceeEEEecccC
Q 001349 784 EMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLS-IACFR-D--KIFSGHSDGTIKVWTGRGSILHLIQQIREHT 855 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~----~~~~~~~~h~~~V~~-l~fsp-d--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~ 855 (1094)
++..++++|.||++++|+.. ...+.+.+|.+-|.. ++|.+ + .+++|+.|++|.+|...+. .++.++++|.
T Consensus 24 ~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~--~P~~~LkgH~ 101 (745)
T KOG0301|consen 24 DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA--EPLYTLKGHK 101 (745)
T ss_pred CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCC--Cchhhhhccc
Confidence 45689999999999999986 234567788888877 88876 3 7999999999999999988 8999999999
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC
Q 001349 856 KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS 935 (1094)
Q Consensus 856 ~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~ 935 (1094)
..|.+++...++. ++|||.|.|+++|-...-. .....|...|+++. +-|.
T Consensus 102 snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~---~~l~gH~asVWAv~-------~l~e------------------- 151 (745)
T KOG0301|consen 102 SNVCSLSIGEDGT-LISGSWDSTAKVWRIGELV---YSLQGHTASVWAVA-------SLPE------------------- 151 (745)
T ss_pred cceeeeecCCcCc-eEecccccceEEecchhhh---cccCCcchheeeee-------ecCC-------------------
Confidence 9999999888887 9999999999999886521 12344566666555 3333
Q ss_pred CCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCe
Q 001349 936 KYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN 1015 (1094)
Q Consensus 936 ~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~ 1015 (1094)
+.+++||.|.+|++|.- ++.. +++.+|.+.|..+++-++..+ ++++.|| .|++|++ +|.
T Consensus 152 ----------~~~vTgsaDKtIklWk~--~~~l------~tf~gHtD~VRgL~vl~~~~f-lScsNDg-~Ir~w~~-~ge 210 (745)
T KOG0301|consen 152 ----------NTYVTGSADKTIKLWKG--GTLL------KTFSGHTDCVRGLAVLDDSHF-LSCSNDG-SIRLWDL-DGE 210 (745)
T ss_pred ----------CcEEeccCcceeeeccC--Cchh------hhhccchhheeeeEEecCCCe-EeecCCc-eEEEEec-cCc
Confidence 35899999999999985 5555 688899999999999988655 6778887 9999999 566
Q ss_pred EEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1016 MVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1016 ~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
++..+. |...+.++....+ .++++++|++++||+.. .+.+.+. .....||++.+-++|. +++|++||.|+||.
T Consensus 211 ~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~-lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT 286 (745)
T KOG0301|consen 211 VLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT-LPTTSIWSAKVLLNGD-IVVGGSDGRVRVFT 286 (745)
T ss_pred eeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe-cCccceEEEEEeeCCC-EEEeccCceEEEEE
Confidence 666555 7888999985443 89999999999999987 6777774 2334899999988887 67788999999996
Q ss_pred C
Q 001349 1093 L 1093 (1094)
Q Consensus 1093 l 1093 (1094)
.
T Consensus 287 ~ 287 (745)
T KOG0301|consen 287 V 287 (745)
T ss_pred e
Confidence 4
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-23 Score=214.30 Aligned_cols=242 Identities=19% Similarity=0.272 Sum_probs=199.1
Q ss_pred cccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeE------EEecccCCCeEEEEEecCCCEEEEEeCCCcEE
Q 001349 809 DSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLI------QQIREHTKAVTGLAILQSGEMLYSGSLDKTAR 880 (1094)
Q Consensus 809 ~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~------~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~ 880 (1094)
..+....+.|..|+|| +|++|+.||-|.|||..+|+.+.- ..+--|..+|.|+.||.|...+++|+.||.|+
T Consensus 209 KFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 209 KFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIK 288 (508)
T ss_pred ecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEE
Confidence 3466778899999997 999999999999999999843221 12334788999999999999999999999999
Q ss_pred EEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEE
Q 001349 881 VWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEI 960 (1094)
Q Consensus 881 vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iw 960 (1094)
||.+.+|.........|...|+++. |+.|+. .+++++.|.++++-
T Consensus 289 vWri~tG~ClRrFdrAHtkGvt~l~-------FSrD~S----------------------------qiLS~sfD~tvRiH 333 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTKGVTCLS-------FSRDNS----------------------------QILSASFDQTVRIH 333 (508)
T ss_pred EEEEecchHHHHhhhhhccCeeEEE-------EccCcc----------------------------hhhcccccceEEEe
Confidence 9999998522222223455566665 655554 48899999999999
Q ss_pred ECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec---CCCCEEEEEEeCC---
Q 001349 961 DLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---TLSEVRAMVVSSE--- 1034 (1094)
Q Consensus 961 Dl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~---~~~~v~~l~~spd--- 1034 (1094)
-+.+|+++ +.+.||+..|+...|.++|..+++++.|| +|++|+.++..++.+|+ ....|.++..-|.
T Consensus 334 GlKSGK~L------KEfrGHsSyvn~a~ft~dG~~iisaSsDg-tvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpe 406 (508)
T KOG0275|consen 334 GLKSGKCL------KEFRGHSSYVNEATFTDDGHHIISASSDG-TVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPE 406 (508)
T ss_pred ccccchhH------HHhcCccccccceEEcCCCCeEEEecCCc-cEEEecCcchhhhhhccCCCCcccceeEEEcCCCCc
Confidence 99999998 77889999999999999999999999997 99999999999999998 3456777777665
Q ss_pred EEEEEEcCCeEEEEECCCCcEEEEecccC--CcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1035 LVYLGCKGGTVEIWDQKRQIRIETLQTGT--SGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1035 ~l~sgs~dg~I~vwd~~t~~~~~~l~~~h--~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
.++++...++|+|-++. |+.++.+..|. .+...+.+.||.|.++++.+.|+.++.|.+
T Consensus 407 h~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~ 466 (508)
T KOG0275|consen 407 HFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSV 466 (508)
T ss_pred eEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEe
Confidence 88889999999999985 67788886553 235566679999999999999999988864
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-22 Score=236.62 Aligned_cols=238 Identities=20% Similarity=0.290 Sum_probs=185.8
Q ss_pred HhhhccccccccccCcEEEEeeCCCCeEEEeCCc----------------------------------------------
Q 001349 771 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE---------------------------------------------- 804 (1094)
Q Consensus 771 ~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~---------------------------------------------- 804 (1094)
.|...+...-|+.||+|+|+||.|+.|+||.+..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 4455566777999999999999999999996422
Q ss_pred ----------------ceeecccCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEec-C
Q 001349 805 ----------------LVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ-S 866 (1094)
Q Consensus 805 ----------------~~~~~~~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fsp-d 866 (1094)
+...+.||.+.|..+.||.+ +|+|++.|.|||+|++... .|+..|. |.+.|+||+|+| |
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~--~CL~~F~-HndfVTcVaFnPvD 421 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRK--ECLKVFS-HNDFVTCVAFNPVD 421 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCc--ceeeEEe-cCCeeEEEEecccC
Confidence 11345689999999999997 9999999999999999988 8999885 999999999999 8
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCC
Q 001349 867 GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQG 946 (1094)
Q Consensus 867 g~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~ 946 (1094)
.+|++|||-||.||||++... +.....+...-|++++ |.|||++
T Consensus 422 DryFiSGSLD~KvRiWsI~d~--~Vv~W~Dl~~lITAvc-------y~PdGk~--------------------------- 465 (712)
T KOG0283|consen 422 DRYFISGSLDGKVRLWSISDK--KVVDWNDLRDLITAVC-------YSPDGKG--------------------------- 465 (712)
T ss_pred CCcEeecccccceEEeecCcC--eeEeehhhhhhheeEE-------eccCCce---------------------------
Confidence 999999999999999999886 5555566677788877 9999986
Q ss_pred EEEEEEcCCeEEEEECCCCceeEEecc----ceeecCCCCCeEEEEEeCCcc-EEEEEECCCCEEEEEECCCCeEEEEec
Q 001349 947 KVYCGCQDGAIQEIDLATGTFATIQTG----HRKLLGKANPVHALQVHNGLV-YTASTSLDGAAVKMWSTSNYNMVGSLP 1021 (1094)
Q Consensus 947 ~l~sgs~Dg~I~iwDl~~~~~~~~~~~----~~~~~~h~~~V~sl~fs~~~~-~las~s~Dg~~I~iwd~~~~~~~~~~~ 1021 (1094)
.++|+.+|.+++|+....+....... .++.. | ..|+.+.|.|... -+...+.| ..|||||.++..++..|+
T Consensus 466 -avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~-~-~rITG~Q~~p~~~~~vLVTSnD-SrIRI~d~~~~~lv~KfK 541 (712)
T KOG0283|consen 466 -AVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQ-G-KRITGLQFFPGDPDEVLVTSND-SRIRIYDGRDKDLVHKFK 541 (712)
T ss_pred -EEEEEeccEEEEEEccCCeEEEeeeEeeccCcccc-C-ceeeeeEecCCCCCeEEEecCC-CceEEEeccchhhhhhhc
Confidence 56677777778887776655433211 11111 2 2899999986544 23444556 499999999888888887
Q ss_pred C---CCCEEEEEEeCC--EEEEEEcCCeEEEEECC
Q 001349 1022 T---LSEVRAMVVSSE--LVYLGCKGGTVEIWDQK 1051 (1094)
Q Consensus 1022 ~---~~~v~~l~~spd--~l~sgs~dg~I~vwd~~ 1051 (1094)
+ ...-....|+.| +|++|++|..|+||+..
T Consensus 542 G~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 542 GFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred ccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 3 233345566666 99999999999999973
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-22 Score=218.18 Aligned_cols=229 Identities=19% Similarity=0.263 Sum_probs=196.3
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCCc--ceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEec
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIR 852 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~ 852 (1094)
...|..||..++.|...|.|+|||.++ .+..+.+|+.+|..+.|+|. .+++|+.|+.+++||+.+. .....+.
T Consensus 73 s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a--~v~~~l~ 150 (487)
T KOG0310|consen 73 SVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA--YVQAELS 150 (487)
T ss_pred EEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc--EEEEEec
Confidence 455667899999999999999999875 67888999999999999994 8999999999999999998 4566899
Q ss_pred ccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEE
Q 001349 853 EHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL 931 (1094)
Q Consensus 853 ~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l 931 (1094)
+|++.|.+.+|+| ++.+++|||.||+||+||++... ..+...+|..+|.++. |.|.|..
T Consensus 151 ~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pVe~vl-------~lpsgs~------------ 210 (487)
T KOG0310|consen 151 GHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPVESVL-------ALPSGSL------------ 210 (487)
T ss_pred CCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEEecCCCceeeEE-------EcCCCCE------------
Confidence 9999999999999 56799999999999999999864 4555667778888776 7776653
Q ss_pred EcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEEC
Q 001349 932 LNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWST 1011 (1094)
Q Consensus 932 ~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~ 1011 (1094)
++......|++||+.+|.... ..+..|...|+|+.+..++..+.+++.|+ .|++||+
T Consensus 211 -----------------iasAgGn~vkVWDl~~G~qll-----~~~~~H~KtVTcL~l~s~~~rLlS~sLD~-~VKVfd~ 267 (487)
T KOG0310|consen 211 -----------------IASAGGNSVKVWDLTTGGQLL-----TSMFNHNKTVTCLRLASDSTRLLSGSLDR-HVKVFDT 267 (487)
T ss_pred -----------------EEEcCCCeEEEEEecCCceeh-----hhhhcccceEEEEEeecCCceEeeccccc-ceEEEEc
Confidence 333445789999999776553 33445999999999999999999999997 9999999
Q ss_pred CCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECC
Q 001349 1012 SNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQK 1051 (1094)
Q Consensus 1012 ~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~ 1051 (1094)
.+.+.+..+.-.++|.+++++|+ .+++|..||.+.+-+..
T Consensus 268 t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 268 TNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred cceEEEEeeecccceeeEEecCCCceEEEecccceeeeehhh
Confidence 99999999999999999999997 89999999998887543
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-21 Score=229.98 Aligned_cols=232 Identities=16% Similarity=0.218 Sum_probs=168.5
Q ss_pred EEEEEECCCeEEEEecCCCcc--------e---eEEEecccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCceEEE
Q 001349 825 KIFSGHSDGTIKVWTGRGSIL--------H---LIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCV 892 (1094)
Q Consensus 825 ~LaSgs~Dg~I~vWd~~t~~~--------~---~~~~l~~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~~~~ 892 (1094)
.+++++.+.....|+..++.. + ....+.+|.+.|++++|+| ++++|++||.||+|++||+.++.....
T Consensus 34 ~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~ 113 (493)
T PTZ00421 34 NTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN 113 (493)
T ss_pred CcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc
Confidence 556666666666666544310 0 0124678999999999999 889999999999999999986521000
Q ss_pred EecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC---CEEEEEEcCCeEEEEECCCCceeE
Q 001349 893 QVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ---GKVYCGCQDGAIQEIDLATGTFAT 969 (1094)
Q Consensus 893 ~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~---~~l~sgs~Dg~I~iwDl~~~~~~~ 969 (1094)
...+ ...+..|...|.++.|++ +.+++|+.|++|++||+.++...
T Consensus 114 ----~~~~---------------------------l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~- 161 (493)
T PTZ00421 114 ----ISDP---------------------------IVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAV- 161 (493)
T ss_pred ----cCcc---------------------------eEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEE-
Confidence 0000 001122344555666653 35899999999999999998776
Q ss_pred EeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCC-CEEEEEEeCC--EEEEEE----c
Q 001349 970 IQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLS-EVRAMVVSSE--LVYLGC----K 1041 (1094)
Q Consensus 970 ~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~-~v~~l~~spd--~l~sgs----~ 1041 (1094)
..+.+|...|.+++|++++.++++++.|+ +|++||+++++.+.++. |.+ .+..+.|.++ .+++++ .
T Consensus 162 -----~~l~~h~~~V~sla~spdG~lLatgs~Dg-~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~ 235 (493)
T PTZ00421 162 -----EVIKCHSDQITSLEWNLDGSLLCTTSKDK-KLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQ 235 (493)
T ss_pred -----EEEcCCCCceEEEEEECCCCEEEEecCCC-EEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCC
Confidence 45678889999999999999999999996 99999999999888877 433 3456677776 555543 4
Q ss_pred CCeEEEEECCCCc-EEEEecccCCcceEEEEEcCCCCEEEEEe-CCCcEEEEeCC
Q 001349 1042 GGTVEIWDQKRQI-RIETLQTGTSGKVQCMALDDNEEFLVIGT-SDGRIQAWGLS 1094 (1094)
Q Consensus 1042 dg~I~vwd~~t~~-~~~~l~~~h~~~I~~l~~Spdg~~L~sgs-~DG~I~iWdls 1094 (1094)
|+.|++||+++.. ++......+...+....|++|+++|++|+ .||+|++||+.
T Consensus 236 Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~ 290 (493)
T PTZ00421 236 QRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELM 290 (493)
T ss_pred CCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEee
Confidence 7999999998754 44444223344566778999999999888 59999999973
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8e-22 Score=204.85 Aligned_cols=259 Identities=17% Similarity=0.222 Sum_probs=204.1
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCC-cceeecccCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEecccC
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHT 855 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~-~~~~~~~~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~ 855 (1094)
...|++....|+.+++||++++|+.. ........|.+++.+++|.++ .+++|+.||.|+.+|+.++ ....+..|.
T Consensus 18 ~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~---~~~~igth~ 94 (323)
T KOG1036|consen 18 SVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTG---NEDQIGTHD 94 (323)
T ss_pred eEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCC---cceeeccCC
Confidence 34455567788888999999999998 334455679999999999997 9999999999999999998 345567899
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC
Q 001349 856 KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS 935 (1094)
Q Consensus 856 ~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~ 935 (1094)
.+|.+|.+++-...+++||+|++|++||.+.. ..... ++..
T Consensus 95 ~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~--~~~~~-------------------------------------~d~~ 135 (323)
T KOG1036|consen 95 EGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK--VVVGT-------------------------------------FDQG 135 (323)
T ss_pred CceEEEEeeccCCeEEEcccCccEEEEecccc--ccccc-------------------------------------cccC
Confidence 99999999998889999999999999999862 11111 1223
Q ss_pred CCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCC-
Q 001349 936 KYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY- 1014 (1094)
Q Consensus 936 ~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~- 1014 (1094)
+.|.|+...++.|++|+.|..|.+||+++...... ..-..-...+.++++.|++.-.+.++.|| .|.+=.+...
T Consensus 136 kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q----~reS~lkyqtR~v~~~pn~eGy~~sSieG-RVavE~~d~s~ 210 (323)
T KOG1036|consen 136 KKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQ----RRESSLKYQTRCVALVPNGEGYVVSSIEG-RVAVEYFDDSE 210 (323)
T ss_pred ceEEEEeccCCEEEEeecCceEEEEEcccccchhh----hccccceeEEEEEEEecCCCceEEEeecc-eEEEEccCCch
Confidence 45667777788999999999999999998765421 12223345789999999877778888898 6666555443
Q ss_pred ---eEEEEec-C---------CCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEE
Q 001349 1015 ---NMVGSLP-T---------LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFL 1079 (1094)
Q Consensus 1015 ---~~~~~~~-~---------~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L 1079 (1094)
+....|+ | .-+|++++|+|- .+++|+.||.|.+||..+.+.+..+. .....|.+++|+.||..|
T Consensus 211 ~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~-~~~~SI~slsfs~dG~~L 289 (323)
T KOG1036|consen 211 EAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLA-KYETSISSLSFSMDGSLL 289 (323)
T ss_pred HHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhcc-CCCCceEEEEeccCCCeE
Confidence 2222333 2 145899999997 79999999999999999999998883 556689999999999999
Q ss_pred EEEeC
Q 001349 1080 VIGTS 1084 (1094)
Q Consensus 1080 ~sgs~ 1084 (1094)
|++++
T Consensus 290 Aia~s 294 (323)
T KOG1036|consen 290 AIASS 294 (323)
T ss_pred EEEec
Confidence 99875
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.6e-22 Score=203.87 Aligned_cols=262 Identities=14% Similarity=0.205 Sum_probs=203.6
Q ss_pred eeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 001349 806 VHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVW 882 (1094)
Q Consensus 806 ~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vW 882 (1094)
..+.....+.|.+++|||. +++.||.||+||+|++.......-+....|.++|.+++|+.||..+++|+.|+.+++|
T Consensus 20 ~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 20 YEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLW 99 (347)
T ss_pred eecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEE
Confidence 3445567899999999993 7889999999999999873112225567899999999999999999999999999999
Q ss_pred ECCCCceEEEEecccCccceeeeecCceEEEeeCCC--eEEEEEeCCeEEEEcCCCC-----------ceEEEEeCCEEE
Q 001349 883 SIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGA--GIKVHLRNGKTKLLNSSKY-----------PKCLALVQGKVY 949 (1094)
Q Consensus 883 di~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~--~l~~~~~~g~i~l~~~~~~-----------v~~l~~s~~~l~ 949 (1094)
|+.+++...+ ..|..+|..+. |.+... .+++++||.++++||.... ++++......++
T Consensus 100 DL~S~Q~~~v--~~Hd~pvkt~~-------wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~v 170 (347)
T KOG0647|consen 100 DLASGQVSQV--AAHDAPVKTCH-------WVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAV 170 (347)
T ss_pred EccCCCeeee--eecccceeEEE-------EecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeE
Confidence 9999954444 45588899888 555444 8899999999999997532 334434445688
Q ss_pred EEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEE--EEec-CC---
Q 001349 950 CGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMV--GSLP-TL--- 1023 (1094)
Q Consensus 950 sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~--~~~~-~~--- 1023 (1094)
++..++.|.+|+++++..... +....-.-.+.+++...+....+.|+.+| .+-|..+..+.+. .+|+ |.
T Consensus 171 Vata~r~i~vynL~n~~te~k----~~~SpLk~Q~R~va~f~d~~~~alGsiEG-rv~iq~id~~~~~~nFtFkCHR~~~ 245 (347)
T KOG0647|consen 171 VATAERHIAVYNLENPPTEFK----RIESPLKWQTRCVACFQDKDGFALGSIEG-RVAIQYIDDPNPKDNFTFKCHRSTN 245 (347)
T ss_pred EEecCCcEEEEEcCCCcchhh----hhcCcccceeeEEEEEecCCceEeeeecc-eEEEEecCCCCccCceeEEEeccCC
Confidence 999999999999987754311 00011223578999887777678888887 8888888776332 3333 22
Q ss_pred ------CCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEE
Q 001349 1024 ------SEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIG 1082 (1094)
Q Consensus 1024 ------~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sg 1082 (1094)
..|++++|+|. .+++++.||++.+||......+.+. ..|..+|++.+|+.+|.+++-+
T Consensus 246 ~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s-~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 246 SVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTS-ETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred CCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhcc-CcCCCccceeEecCCCCEEEEE
Confidence 24788999997 7999999999999999988888887 4789999999999999988754
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.8e-21 Score=227.30 Aligned_cols=227 Identities=16% Similarity=0.182 Sum_probs=164.6
Q ss_pred EEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeee
Q 001349 828 SGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAV 906 (1094)
Q Consensus 828 Sgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspd-g~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~ 906 (1094)
.|+.+|.|++|+.... ..+..+.+|.+.|++++|+|+ +++|+|||.||+|+|||+.++....... ..++
T Consensus 49 gGG~~gvI~L~~~~r~--~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i---~~p~----- 118 (568)
T PTZ00420 49 GGGLIGAIRLENQMRK--PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEI---KDPQ----- 118 (568)
T ss_pred CCCceeEEEeeecCCC--ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccc---ccce-----
Confidence 3667899999998776 678899999999999999996 8999999999999999998642100000 0000
Q ss_pred cCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCC---EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCC
Q 001349 907 SNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQG---KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANP 983 (1094)
Q Consensus 907 ~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~---~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~ 983 (1094)
..+-.|...|.++.|++. .+++|+.|++|++||++++.... .+. |...
T Consensus 119 ----------------------~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~------~i~-~~~~ 169 (568)
T PTZ00420 119 ----------------------CILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAF------QIN-MPKK 169 (568)
T ss_pred ----------------------EEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEE------EEe-cCCc
Confidence 001123344555555541 26789999999999999988653 222 4568
Q ss_pred eEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEE-----EEEeCC--EEEEEEcCC----eEEEEECC
Q 001349 984 VHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRA-----MVVSSE--LVYLGCKGG----TVEIWDQK 1051 (1094)
Q Consensus 984 V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~-----l~~spd--~l~sgs~dg----~I~vwd~~ 1051 (1094)
|.+++|++++.++++++.|+ .|+|||+++++.+.++. |.+.+.. ..|+++ ++++++.|+ .|+|||++
T Consensus 170 V~SlswspdG~lLat~s~D~-~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr 248 (568)
T PTZ00420 170 LSSLKWNIKGNLLSGTCVGK-HMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLK 248 (568)
T ss_pred EEEEEECCCCCEEEEEecCC-EEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECC
Confidence 99999999999999998886 99999999999988887 5444332 233455 788877664 79999998
Q ss_pred C-CcEEEEec-ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1052 R-QIRIETLQ-TGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1052 t-~~~~~~l~-~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
+ ++++..+. ..+.+.+......++|.++++|+.|++|++|++.
T Consensus 249 ~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 249 NTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHS 293 (568)
T ss_pred CCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEcc
Confidence 5 55665542 1223334444445568899999999999999973
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.2e-21 Score=199.41 Aligned_cols=271 Identities=15% Similarity=0.210 Sum_probs=209.6
Q ss_pred ccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeC--CEEEEEEC--CCeEEEEecCCCcceeE
Q 001349 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR--DKIFSGHS--DGTIKVWTGRGSILHLI 848 (1094)
Q Consensus 775 ~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fsp--d~LaSgs~--Dg~I~vWd~~t~~~~~~ 848 (1094)
.+....++.+|..+++++.|.++++||.. ....+...+.-.|..++|.. +.++.++. |.+|+.-++.++ +.+
T Consensus 16 ~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN--kyl 93 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN--KYL 93 (311)
T ss_pred ceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecC--ceE
Confidence 34456677799999999999999999987 34555666666888888865 35555554 899999999999 899
Q ss_pred EEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCe
Q 001349 849 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 928 (1094)
Q Consensus 849 ~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~ 928 (1094)
+.+.||...|+++..+|-+..++|+|.|++|++||++..+....... . ....++|.|.|-.
T Consensus 94 RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~--~--------~~pi~AfDp~GLi--------- 154 (311)
T KOG1446|consen 94 RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL--S--------GRPIAAFDPEGLI--------- 154 (311)
T ss_pred EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec--C--------CCcceeECCCCcE---------
Confidence 99999999999999999889999999999999999997532211111 1 1223347777754
Q ss_pred EEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCc--eeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEE
Q 001349 929 TKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGT--FATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAV 1006 (1094)
Q Consensus 929 i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~--~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I 1006 (1094)
+++|.....|++||++.-. +..++.. ..+.....+.+.|+|+|.++..+...+ .+
T Consensus 155 -------------------fA~~~~~~~IkLyD~Rs~dkgPF~tf~i---~~~~~~ew~~l~FS~dGK~iLlsT~~s-~~ 211 (311)
T KOG1446|consen 155 -------------------FALANGSELIKLYDLRSFDKGPFTTFSI---TDNDEAEWTDLEFSPDGKSILLSTNAS-FI 211 (311)
T ss_pred -------------------EEEecCCCeEEEEEecccCCCCceeEcc---CCCCccceeeeEEcCCCCEEEEEeCCC-cE
Confidence 5556666689999998642 2222111 113456789999999999998887775 99
Q ss_pred EEEECCCCeEEEEecC---CC-CEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEE
Q 001349 1007 KMWSTSNYNMVGSLPT---LS-EVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLV 1080 (1094)
Q Consensus 1007 ~iwd~~~~~~~~~~~~---~~-~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~ 1080 (1094)
.+.|.-+|....++.. .. ......|+|| ++++|+.||+|.+|++++|..+..+...+.+++.++.|+|...+++
T Consensus 212 ~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~ 291 (311)
T KOG1446|consen 212 YLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFV 291 (311)
T ss_pred EEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeee
Confidence 9999999999888873 12 2356788898 8999999999999999999999999655888999999999877777
Q ss_pred EEeCCCcEEEE
Q 001349 1081 IGTSDGRIQAW 1091 (1094)
Q Consensus 1081 sgs~DG~I~iW 1091 (1094)
+++. .+-+|
T Consensus 292 sa~s--~l~fw 300 (311)
T KOG1446|consen 292 SASS--NLVFW 300 (311)
T ss_pred ecCc--eEEEE
Confidence 7654 57777
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-21 Score=202.20 Aligned_cols=242 Identities=21% Similarity=0.339 Sum_probs=193.1
Q ss_pred HhhhccccccccccCcEEEEeeCCCCeEEEeCCc--ceeecccCCCcEEEEEEeCC----EEEEEECCCeEEEEecCCCc
Q 001349 771 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD----KIFSGHSDGTIKVWTGRGSI 844 (1094)
Q Consensus 771 ~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~fspd----~LaSgs~Dg~I~vWd~~t~~ 844 (1094)
+.........++.++.++++||.|-+|+|||... ....+..|.+.|+++.|.++ .|++|+.||.|.+|++..-
T Consensus 39 ~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W- 117 (362)
T KOG0294|consen 39 FSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW- 117 (362)
T ss_pred ccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-
Confidence 3444555677888999999999999999999983 44567789999999999985 7999999999999998766
Q ss_pred ceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEE
Q 001349 845 LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHL 924 (1094)
Q Consensus 845 ~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~ 924 (1094)
.++.++++|.+.|+.++++|.|++-++.+.|+.++.||+-.|..-..... +.. +..+.|+|.|.++++..
T Consensus 118 -~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L--~~~-------at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 118 -ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL--KNK-------ATLVSWSPQGDHFVVSG 187 (362)
T ss_pred -EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc--CCc-------ceeeEEcCCCCEEEEEe
Confidence 89999999999999999999999999999999999999988852222111 222 22344999999887776
Q ss_pred eCCeEEEEcC-----------CCCceEEEEeC-CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEE--e
Q 001349 925 RNGKTKLLNS-----------SKYPKCLALVQ-GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQV--H 990 (1094)
Q Consensus 925 ~~g~i~l~~~-----------~~~v~~l~~s~-~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~f--s 990 (1094)
.++ +.+|.. ...+.|+.|.+ +.+++|..|+.|.+||...+.+. ..+.+|...|..+.+ .
T Consensus 188 ~~~-i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~------~~~~AH~~RVK~i~~~~~ 260 (362)
T KOG0294|consen 188 RNK-IDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPL------TEFLAHENRVKDIASYTN 260 (362)
T ss_pred ccE-EEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccc------eeeecchhheeeeEEEec
Confidence 654 344432 34577777764 77999999999999999987766 567899999999996 4
Q ss_pred CCccEEEEEECCCCEEEEEECCCC-----eEEEEecCCCCEEEEEE
Q 001349 991 NGLVYTASTSLDGAAVKMWSTSNY-----NMVGSLPTLSEVRAMVV 1031 (1094)
Q Consensus 991 ~~~~~las~s~Dg~~I~iwd~~~~-----~~~~~~~~~~~v~~l~~ 1031 (1094)
|++.++++.+.|| .|++||++.. +++..+..+..++|+..
T Consensus 261 ~~~~~lvTaSSDG-~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~~ 305 (362)
T KOG0294|consen 261 PEHEYLVTASSDG-FIKVWDIDMETKKRPTLLAELNTNVRLTCLRV 305 (362)
T ss_pred CCceEEEEeccCc-eEEEEEccccccCCcceeEEeecCCccceeee
Confidence 7889999999998 9999999865 34455555556666554
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-22 Score=203.99 Aligned_cols=228 Identities=17% Similarity=0.199 Sum_probs=181.4
Q ss_pred cccccCcEEEEeeCCCCeEEEeCC---cceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEecc
Q 001349 780 PLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIRE 853 (1094)
Q Consensus 780 ~~~~d~~~l~s~s~dg~I~vWd~~---~~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~ 853 (1094)
+-....+.+++++.||++++||.. .+++.++.|...|.++.|++- .++++|.||+|++|+..-+ ..++++.|
T Consensus 68 Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~--~Sv~Tf~g 145 (311)
T KOG0277|consen 68 WSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP--NSVQTFNG 145 (311)
T ss_pred ecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC--cceEeecC
Confidence 333456689999999999999976 578889999999999999983 7888899999999999887 78999999
Q ss_pred cCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEE
Q 001349 854 HTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLL 932 (1094)
Q Consensus 854 H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~ 932 (1094)
|...|....|+| .++.++++|.||++++||++... +.+....|...+.+.. |+.
T Consensus 146 h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g-k~~~i~ah~~Eil~cd-------w~k----------------- 200 (311)
T KOG0277|consen 146 HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG-KFMSIEAHNSEILCCD-------WSK----------------- 200 (311)
T ss_pred CccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC-ceeEEEeccceeEeec-------ccc-----------------
Confidence 999999999999 78999999999999999987642 1111222223333333 111
Q ss_pred cCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC-ccEEEEEECCCCEEEEEEC
Q 001349 933 NSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG-LVYTASTSLDGAAVKMWST 1011 (1094)
Q Consensus 933 ~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~-~~~las~s~Dg~~I~iwd~ 1011 (1094)
+.+..+++|+.|+.|+.||+++-+... ..+.+|.-.|..++|+|. ..++++++.|- +++|||.
T Consensus 201 ----------y~~~vl~Tg~vd~~vr~wDir~~r~pl-----~eL~gh~~AVRkvk~Sph~~~lLaSasYDm-T~riw~~ 264 (311)
T KOG0277|consen 201 ----------YNHNVLATGGVDNLVRGWDIRNLRTPL-----FELNGHGLAVRKVKFSPHHASLLASASYDM-TVRIWDP 264 (311)
T ss_pred ----------cCCcEEEecCCCceEEEEehhhccccc-----eeecCCceEEEEEecCcchhhHhhhccccc-eEEeccc
Confidence 123569999999999999999765331 567899999999999985 55788999885 9999999
Q ss_pred CCC-eEEEEec-CCCCEEEEEEeCC---EEEEEEcCCeEEEEEC
Q 001349 1012 SNY-NMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQ 1050 (1094)
Q Consensus 1012 ~~~-~~~~~~~-~~~~v~~l~~spd---~l~sgs~dg~I~vwd~ 1050 (1094)
..+ ..+.+.. |...+..+.|++- ++++.+.|+.++||+.
T Consensus 265 ~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 265 ERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 844 4555555 5566778888754 8999999999999985
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.4e-22 Score=199.88 Aligned_cols=254 Identities=17% Similarity=0.251 Sum_probs=189.3
Q ss_pred HHHhhhccccccccccCcEEEEeeCCCCeEEEeCC-----cceeecccCCCcEEEEEEeC----CEEEEEECCCeEEEEe
Q 001349 769 MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-----ELVHVDSSENGKVLSIACFR----DKIFSGHSDGTIKVWT 839 (1094)
Q Consensus 769 ~~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~-----~~~~~~~~h~~~V~~l~fsp----d~LaSgs~Dg~I~vWd 839 (1094)
...|+..++...+.++|.+|+|++.|++|+|+... ..+..+.||.++|+.++|.. ++|+++++||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 35567778888899999999999999999999986 35677899999999999975 3999999999999999
Q ss_pred cCCCcceeEEEecccCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCc--eEEEEecccCccceeeeecCceEEEee
Q 001349 840 GRGSILHLIQQIREHTKAVTGLAILQS--GEMLYSGSLDKTARVWSIGNEE--IHCVQVHDIKDQIQNLAVSNSILCFIP 915 (1094)
Q Consensus 840 ~~t~~~~~~~~l~~H~~~V~sv~fspd--g~~LaSgs~DgtI~vWdi~~~~--~~~~~~~~~~~~V~~v~~~~~~~~fsp 915 (1094)
-.++++.....+..|...|++|+|.|. |-.|++++.||+|.|.+.+... ........|.-.|+++. +.|
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVs-------wap 159 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVS-------WAP 159 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceee-------ecC
Confidence 999988888899999999999999994 7789999999999999887641 01111112222333333 211
Q ss_pred CCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccE
Q 001349 916 QGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVY 995 (1094)
Q Consensus 916 dg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~ 995 (1094)
.. .+| ... .|. +. ..-..
T Consensus 160 a~-----------------------------------~~g----------~~~----------~~~-~~------~~~kr 177 (299)
T KOG1332|consen 160 AS-----------------------------------APG----------SLV----------DQG-PA------AKVKR 177 (299)
T ss_pred cC-----------------------------------CCc----------ccc----------ccC-cc------cccce
Confidence 10 000 000 000 00 00245
Q ss_pred EEEEECCCCEEEEEECCCCe--EEEEec-CCCCEEEEEEeCC------EEEEEEcCCeEEEEECCCC--cEEEEecccCC
Q 001349 996 TASTSLDGAAVKMWSTSNYN--MVGSLP-TLSEVRAMVVSSE------LVYLGCKGGTVEIWDQKRQ--IRIETLQTGTS 1064 (1094)
Q Consensus 996 las~s~Dg~~I~iwd~~~~~--~~~~~~-~~~~v~~l~~spd------~l~sgs~dg~I~vwd~~t~--~~~~~l~~~h~ 1064 (1094)
+++++.|. .|+||+..+++ .-+++. |.+.|+.++|.|. ++++++.||+|.||-.... .-..++.....
T Consensus 178 lvSgGcDn-~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~ 256 (299)
T KOG1332|consen 178 LVSGGCDN-LVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFP 256 (299)
T ss_pred eeccCCcc-ceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCC
Confidence 78888885 99999998753 334455 7899999999997 6999999999999976531 11122222345
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1065 GKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1065 ~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
..++.+.||+.|+.|+.++.|+.|.+|.
T Consensus 257 ~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 257 DVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred cceEEEEEeccccEEEEecCCcEEEEEE
Confidence 6799999999999999999999999995
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.7e-22 Score=222.01 Aligned_cols=272 Identities=15% Similarity=0.196 Sum_probs=210.6
Q ss_pred CcEEEEeeCCCCeEEEeCCccee-------e--------------------------------cccCCCcEEEEEEeCC-
Q 001349 785 MVKVLSNGHDSSADFWNHRELVH-------V--------------------------------DSSENGKVLSIACFRD- 824 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~~~~~-------~--------------------------------~~~h~~~V~~l~fspd- 824 (1094)
...++|++.|++|++|++..+.+ + ..+....|.+++.+|+
T Consensus 392 ~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g 471 (1080)
T KOG1408|consen 392 RGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG 471 (1080)
T ss_pred ccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc
Confidence 44589999999999999752110 0 0112447999999997
Q ss_pred -EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEec---CCCEEEEEeCCCcEEEEECCCCceEEEEecccCcc
Q 001349 825 -KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ---SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQ 900 (1094)
Q Consensus 825 -~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fsp---dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~ 900 (1094)
+|++|..-|+++|||+..- .....+..|...|.|+.|+. ..++|+++|.|..|.|+|+..+-.......+|...
T Consensus 472 qhLAsGDr~GnlrVy~Lq~l--~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSss 549 (1080)
T KOG1408|consen 472 QHLASGDRGGNLRVYDLQEL--EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSS 549 (1080)
T ss_pred ceecccCccCceEEEEehhh--hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccc
Confidence 9999999999999999987 56777889999999999985 35799999999999999998753222223345566
Q ss_pred ceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCC
Q 001349 901 IQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGK 980 (1094)
Q Consensus 901 V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h 980 (1094)
|+++. |...|-. -++++++.|..|.+--.........+..+....+|
T Consensus 550 ITsvK-------Fa~~gln--------------------------~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~k 596 (1080)
T KOG1408|consen 550 ITSVK-------FACNGLN--------------------------RKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSK 596 (1080)
T ss_pred eeEEE-------EeecCCc--------------------------eEEEeccCchhhheehhccccCceecccccccccc
Confidence 66665 4433311 14778888887765332221112222222222222
Q ss_pred CCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec----CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCc
Q 001349 981 ANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP----TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI 1054 (1094)
Q Consensus 981 ~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~----~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~ 1054 (1094)
..++.++..|...++++++.| +.|+|||+.+++.++.|+ |.+....+..+|. |+++.+.|.++.++|..+|+
T Consensus 597 -tTlYDm~Vdp~~k~v~t~cQD-rnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgE 674 (1080)
T KOG1408|consen 597 -TTLYDMAVDPTSKLVVTVCQD-RNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGE 674 (1080)
T ss_pred -ceEEEeeeCCCcceEEEEecc-cceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccch
Confidence 478999999999999999999 599999999999999998 3466777778777 89999999999999999999
Q ss_pred EEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1055 RIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1055 ~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
++... .||...|+.+.|++|-+.|++.+.||-|.||.+.
T Consensus 675 cvA~m-~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 675 CVAQM-TGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred hhhhh-cCcchheeeeeecccchhheeecCCceEEEEECc
Confidence 99999 6999999999999999999999999999999874
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.9e-21 Score=197.01 Aligned_cols=289 Identities=16% Similarity=0.217 Sum_probs=210.9
Q ss_pred HHHHHHhhhccccccccccCcEEEEeeCCCCeEEEeCCcc-------eeecccCCCcEEEEEEeCC---EEEEEECCCeE
Q 001349 766 KDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHREL-------VHVDSSENGKVLSIACFRD---KIFSGHSDGTI 835 (1094)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~-------~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I 835 (1094)
-.++++|..-+....|+.||.+++|++.|++|++|+++.. +... -.-+..+.+.|+|| .+++.-...++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCCCceEEEECCCcceEEEEEccCCEE
Confidence 3567888888888999999999999999999999998731 1111 12346789999998 77777788899
Q ss_pred EEEecCCC---ccee-------EEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeee
Q 001349 836 KVWTGRGS---ILHL-------IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLA 905 (1094)
Q Consensus 836 ~vWd~~t~---~~~~-------~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~ 905 (1094)
++|..... .... ...-+.|.-.|..+-...++.+|+|++.|.+|.+|+++...+..+....
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq--------- 228 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQ--------- 228 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeecccc---------
Confidence 99976422 1110 1111346667777877778999999999999999999953233322221
Q ss_pred ecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeE
Q 001349 906 VSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVH 985 (1094)
Q Consensus 906 ~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~ 985 (1094)
..+...+.+|+|+++++......+++|.. +-..||+++-- .....+.||...|.
T Consensus 229 ~~n~~aavSP~GRFia~~gFTpDVkVwE~---------------~f~kdG~fqev-----------~rvf~LkGH~saV~ 282 (420)
T KOG2096|consen 229 SSNYDAAVSPDGRFIAVSGFTPDVKVWEP---------------IFTKDGTFQEV-----------KRVFSLKGHQSAVL 282 (420)
T ss_pred ccccceeeCCCCcEEEEecCCCCceEEEE---------------EeccCcchhhh-----------hhhheeccchhhee
Confidence 12234458999999877777776666631 12233432211 11145789999999
Q ss_pred EEEEeCCccEEEEEECCCCEEEEEECCC-------CeEEEEec-----CCCCEEEEEEeCC-EEEEEEcCCeEEEEECCC
Q 001349 986 ALQVHNGLVYTASTSLDGAAVKMWSTSN-------YNMVGSLP-----TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKR 1052 (1094)
Q Consensus 986 sl~fs~~~~~las~s~Dg~~I~iwd~~~-------~~~~~~~~-----~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t 1052 (1094)
.++|+++...+++.+.|| +++|||+.- .+.++... .++....+..+|+ -+++.+...++++|..++
T Consensus 283 ~~aFsn~S~r~vtvSkDG-~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~ 361 (420)
T KOG2096|consen 283 AAAFSNSSTRAVTVSKDG-KWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASED 361 (420)
T ss_pred eeeeCCCcceeEEEecCC-cEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEccc
Confidence 999999999999999998 999999852 22233331 2445568999998 566667778999999999
Q ss_pred CcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1053 QIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1053 ~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
|+...++...|.+.|++++|+++|++++|++ |..++++.
T Consensus 362 g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 362 GKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred CccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 9999999889999999999999999999997 56677653
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.3e-21 Score=194.58 Aligned_cols=238 Identities=22% Similarity=0.248 Sum_probs=193.2
Q ss_pred eecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEec-CCCEEEEEeCCCcEEEEE
Q 001349 807 HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWS 883 (1094)
Q Consensus 807 ~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWd 883 (1094)
....+|.+.|.+++|+-+ .+++|+.|+++.||++...+...-....+|++.|-.++|+| ....+++++.|++|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 445789999999999986 99999999999999998875444456679999999999998 678999999999999999
Q ss_pred CCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECC
Q 001349 884 IGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA 963 (1094)
Q Consensus 884 i~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~ 963 (1094)
++.++ +......+..-.. +.|+|+|.+ +++|..|..|.+.|.+
T Consensus 94 ~r~~k--~~~~i~~~~eni~-------i~wsp~g~~----------------------------~~~~~kdD~it~id~r 136 (313)
T KOG1407|consen 94 IRSGK--CTARIETKGENIN-------ITWSPDGEY----------------------------IAVGNKDDRITFIDAR 136 (313)
T ss_pred eccCc--EEEEeeccCcceE-------EEEcCCCCE----------------------------EEEecCcccEEEEEec
Confidence 99985 3333222222222 238888875 6778888899999998
Q ss_pred CCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEE
Q 001349 964 TGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGC 1040 (1094)
Q Consensus 964 ~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs 1040 (1094)
+.+.....+ ....++.+.|+.++.++...... ++|.|.....-+++++++ |.....++.|+|+ ++++|+
T Consensus 137 ~~~~~~~~~-------~~~e~ne~~w~~~nd~Fflt~Gl-G~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~Gs 208 (313)
T KOG1407|consen 137 TYKIVNEEQ-------FKFEVNEISWNNSNDLFFLTNGL-GCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGS 208 (313)
T ss_pred ccceeehhc-------ccceeeeeeecCCCCEEEEecCC-ceEEEEeccccccccccccCCcceEEEEECCCCceEeecc
Confidence 887663322 23457778887544444444333 499999999999999998 8899999999999 999999
Q ss_pred cCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEE
Q 001349 1041 KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQA 1090 (1094)
Q Consensus 1041 ~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~i 1090 (1094)
.|-.+.+||+...-+++.+ ..+.-+|..+.||.||++|++||+|..|-|
T Consensus 209 ADAlvSLWD~~ELiC~R~i-sRldwpVRTlSFS~dg~~lASaSEDh~IDI 257 (313)
T KOG1407|consen 209 ADALVSLWDVDELICERCI-SRLDWPVRTLSFSHDGRMLASASEDHFIDI 257 (313)
T ss_pred ccceeeccChhHhhhheee-ccccCceEEEEeccCcceeeccCccceEEe
Confidence 9999999999999999999 578889999999999999999999988754
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4e-21 Score=198.41 Aligned_cols=290 Identities=17% Similarity=0.240 Sum_probs=220.4
Q ss_pred CcEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEE
Q 001349 785 MVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLA 862 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~ 862 (1094)
..++++.-.++++.. +....+.||.+.|+.++-... .+.+++.|.+.+||.++++ .|+.++.||.+.|++|.
T Consensus 124 tsrivssFk~~t~~~----~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg--~CL~~Y~GH~GSVNsik 197 (481)
T KOG0300|consen 124 TSRIVSSFKDGTVKF----RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESG--ACLATYTGHTGSVNSIK 197 (481)
T ss_pred cchheeeecCCceeE----eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccc--cceeeecccccceeeEE
Confidence 456666666666432 345677899999999988753 8999999999999999999 89999999999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEEC------CCC--------c--eEE-----------------------EEecccCcccee
Q 001349 863 ILQSGEMLYSGSLDKTARVWSI------GNE--------E--IHC-----------------------VQVHDIKDQIQN 903 (1094)
Q Consensus 863 fspdg~~LaSgs~DgtI~vWdi------~~~--------~--~~~-----------------------~~~~~~~~~V~~ 903 (1094)
|++.+.+++++|.|++..||.. ... + ..+ .....|...|.+
T Consensus 198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 9999999999999999999972 110 0 000 001112222222
Q ss_pred eeecCceEEEeeCCCeEEEEEeCCeEEEEcCCC------------CceEEEEeC--CEEEEEEcCCeEEEEECCCCceeE
Q 001349 904 LAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSK------------YPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFAT 969 (1094)
Q Consensus 904 v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~------------~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~ 969 (1094)
.. |...|+.+++++||.+..+|+... ..+.+..++ ..+++.+.|.+.++||.+..-..
T Consensus 278 ~d-------WL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~s- 349 (481)
T KOG0300|consen 278 CD-------WLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQS- 349 (481)
T ss_pred hh-------hhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcce-
Confidence 22 667789999999999999998532 222223333 34788999999999999843221
Q ss_pred EeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCC-eEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEE
Q 001349 970 IQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY-NMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVE 1046 (1094)
Q Consensus 970 ~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~-~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~ 1046 (1094)
...|.||...|+++.|..+... ++++.| ++|++||+++. .++.++...++++.++++.. .++.--++..|+
T Consensus 350 ----V~VFQGHtdtVTS~vF~~dd~v-VSgSDD-rTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvR 423 (481)
T KOG0300|consen 350 ----VAVFQGHTDTVTSVVFNTDDRV-VSGSDD-RTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVR 423 (481)
T ss_pred ----eeeecccccceeEEEEecCCce-eecCCC-ceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEE
Confidence 1578999999999999877654 666655 69999999975 57888888999999999876 677777888999
Q ss_pred EEECCCCcEE---EEecccCCcceEEEEEcCCC--CEEEEEeCCCcEEEEeCC
Q 001349 1047 IWDQKRQIRI---ETLQTGTSGKVQCMALDDNE--EFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1047 vwd~~t~~~~---~~l~~~h~~~I~~l~~Spdg--~~L~sgs~DG~I~iWdls 1094 (1094)
+||+...... .+-..+|...|+|++|..+. .-|++++.|..+.-|+++
T Consensus 424 lfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 424 LFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred EEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEec
Confidence 9999754422 22235899999999998654 458899999999999874
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.6e-20 Score=180.97 Aligned_cols=281 Identities=16% Similarity=0.142 Sum_probs=213.4
Q ss_pred ccccccccccCcEEEEeeCCCCeEEEeCCcc-----------------eeecccCCCcEEEEEEeCC--EEEEEECCCeE
Q 001349 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHREL-----------------VHVDSSENGKVLSIACFRD--KIFSGHSDGTI 835 (1094)
Q Consensus 775 ~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~-----------------~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I 835 (1094)
.++...|.+.|...+.|+...+.+|..+... -.....|.+.|+|.+|+|+ +|++|+.|.+|
T Consensus 34 airav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~i 113 (350)
T KOG0641|consen 34 AIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTI 113 (350)
T ss_pred heeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceE
Confidence 4556778888999999999999999865411 1223468999999999996 99999999999
Q ss_pred EEEecCCCcc---eeEEEecccCCCeEEEEEecC----CCEEEEEeC-CCcEEEEECCCCceEEEEecccCccceeeeec
Q 001349 836 KVWTGRGSIL---HLIQQIREHTKAVTGLAILQS----GEMLYSGSL-DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVS 907 (1094)
Q Consensus 836 ~vWd~~t~~~---~~~~~l~~H~~~V~sv~fspd----g~~LaSgs~-DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~ 907 (1094)
++--++.... -.-..+.-|.+.|..++|-.+ |.+|++++. |..|++-|..+|+. +. .+
T Consensus 114 k~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~--~~---------a~--- 179 (350)
T KOG0641|consen 114 KVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG--FH---------AL--- 179 (350)
T ss_pred EEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc--ce---------ee---
Confidence 9976543211 123456779999999999653 567777664 66677767666541 11 10
Q ss_pred CceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecC-CCCCeEE
Q 001349 908 NSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLG-KANPVHA 986 (1094)
Q Consensus 908 ~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~-h~~~V~s 986 (1094)
--..|..++..+|+| -.+++|+.|.+|++||++-..++.+......-.| ....|.+
T Consensus 180 -----sghtghilalyswn~------------------~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaa 236 (350)
T KOG0641|consen 180 -----SGHTGHILALYSWNG------------------AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAA 236 (350)
T ss_pred -----cCCcccEEEEEEecC------------------cEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEE
Confidence 011233334444443 3589999999999999999888866553322222 2367999
Q ss_pred EEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCC----cEEEEe
Q 001349 987 LQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQ----IRIETL 1059 (1094)
Q Consensus 987 l~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~----~~~~~l 1059 (1094)
++..|.+.+++++..|. ...+||++.+.+++.|. |...|.++.|+|. ++.+++.|..|++-|+... -++...
T Consensus 237 v~vdpsgrll~sg~~ds-sc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv 315 (350)
T KOG0641|consen 237 VAVDPSGRLLASGHADS-SCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVV 315 (350)
T ss_pred EEECCCcceeeeccCCC-ceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEE
Confidence 99999999999998885 89999999999999987 8899999999998 8999999999999998642 123333
Q ss_pred cccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1060 QTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1060 ~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
..|...+..+.|+|..-.+++.+.|.++.+|-++
T Consensus 316 -~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 316 -AEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred -EeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 4688899999999999889999999999999764
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-21 Score=211.23 Aligned_cols=248 Identities=19% Similarity=0.236 Sum_probs=190.3
Q ss_pred ccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCc--------ceeEEEecccCCCeEEEEEec-CCCEEEEEeCCC
Q 001349 810 SSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSI--------LHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDK 877 (1094)
Q Consensus 810 ~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~--------~~~~~~l~~H~~~V~sv~fsp-dg~~LaSgs~Dg 877 (1094)
..|.+.|+.+.+-|. .+++++..+.|.|||..+.. ..+-..+.+|++.-.+++|++ ..-.|++|+.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 468999999999884 89999999999999987532 123347889999888999998 455899999999
Q ss_pred cEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC---CEEEEEEcC
Q 001349 878 TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ---GKVYCGCQD 954 (1094)
Q Consensus 878 tI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~---~~l~sgs~D 954 (1094)
+|++||+...... .++. .....+-.|...|..++|++ +.+.+++.|
T Consensus 201 ~i~lwdi~~~~~~--------~~~~-----------------------~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd 249 (422)
T KOG0264|consen 201 TICLWDINAESKE--------DKVV-----------------------DPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDD 249 (422)
T ss_pred cEEEEeccccccC--------Cccc-----------------------cceEEeecCCcceehhhccccchhhheeecCC
Confidence 9999999874310 0000 00111122344455555543 458899999
Q ss_pred CeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeC-CccEEEEEECCCCEEEEEECCCC-eEEEEec-CCCCEEEEEE
Q 001349 955 GAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDGAAVKMWSTSNY-NMVGSLP-TLSEVRAMVV 1031 (1094)
Q Consensus 955 g~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~-~~~~las~s~Dg~~I~iwd~~~~-~~~~~~~-~~~~v~~l~~ 1031 (1094)
+.+.+||+++++. .......+|.+.|+|++|+| ++..+|+++.|+ +|.+||+++. +++.++. |...|..+.|
T Consensus 250 ~~L~iwD~R~~~~----~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~-tV~LwDlRnL~~~lh~~e~H~dev~~V~W 324 (422)
T KOG0264|consen 250 GKLMIWDTRSNTS----KPSHSVKAHSAEVNCVAFNPFNEFILATGSADK-TVALWDLRNLNKPLHTFEGHEDEVFQVEW 324 (422)
T ss_pred CeEEEEEcCCCCC----CCcccccccCCceeEEEeCCCCCceEEeccCCC-cEEEeechhcccCceeccCCCcceEEEEe
Confidence 9999999997421 12256788999999999986 567788888886 9999999974 4666776 7899999999
Q ss_pred eCC---EEEEEEcCCeEEEEECCCC--------------cEEEEecccCCcceEEEEEcCCCCE-EEEEeCCCcEEEEeC
Q 001349 1032 SSE---LVYLGCKGGTVEIWDQKRQ--------------IRIETLQTGTSGKVQCMALDDNEEF-LVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1032 spd---~l~sgs~dg~I~vwd~~t~--------------~~~~~l~~~h~~~I~~l~~Spdg~~-L~sgs~DG~I~iWdl 1093 (1094)
+|+ .+++++.|+.+.|||+..- +++... .||...|..+.|+|+..+ |++++.|+.++||+.
T Consensus 325 SPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~H-gGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 325 SPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIH-GGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred CCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEe-cCcccccccccCCCCCCeEEEEecCCceEEEeec
Confidence 998 7999999999999998642 133444 799999999999998865 678899999999986
Q ss_pred C
Q 001349 1094 S 1094 (1094)
Q Consensus 1094 s 1094 (1094)
+
T Consensus 404 s 404 (422)
T KOG0264|consen 404 A 404 (422)
T ss_pred c
Confidence 3
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-21 Score=206.67 Aligned_cols=245 Identities=15% Similarity=0.277 Sum_probs=199.8
Q ss_pred ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCC-CcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 001349 805 LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG-SILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 881 (1094)
Q Consensus 805 ~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t-~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~v 881 (1094)
..+++..|++.|+-+.||++ +|||++.|.+..+|++.. ...+..+++.+|..+|.-+.||||.++|++++.|..+++
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 45678899999999999997 999999999999998753 335678899999999999999999999999999999999
Q ss_pred EECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEE
Q 001349 882 WSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEID 961 (1094)
Q Consensus 882 Wdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwD 961 (1094)
||+.+|.........+...+.+.+ |.|||.. +++|+.|++|..||
T Consensus 296 wDv~tgd~~~~y~~~~~~S~~sc~-------W~pDg~~----------------------------~V~Gs~dr~i~~wd 340 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPSGLGFSVSSCA-------WCPDGFR----------------------------FVTGSPDRTIIMWD 340 (519)
T ss_pred ccCCcchhhhhcccCcCCCcceeE-------EccCCce----------------------------eEecCCCCcEEEec
Confidence 999999755444444444444444 8888874 78899999999999
Q ss_pred CCCCceeEEeccceeecCC-CCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEE
Q 001349 962 LATGTFATIQTGHRKLLGK-ANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYL 1038 (1094)
Q Consensus 962 l~~~~~~~~~~~~~~~~~h-~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~s 1038 (1094)
+.... .. .+.+- ...|.+++..+||.++.+...|. .|++++..+......+....+|+++.+|.| ++.+
T Consensus 341 lDgn~-~~------~W~gvr~~~v~dlait~Dgk~vl~v~~d~-~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~Lv 412 (519)
T KOG0293|consen 341 LDGNI-LG------NWEGVRDPKVHDLAITYDGKYVLLVTVDK-KIRLYNREARVDRGLISEEQPITSFSISKDGKLALV 412 (519)
T ss_pred CCcch-hh------cccccccceeEEEEEcCCCcEEEEEeccc-ceeeechhhhhhhccccccCceeEEEEcCCCcEEEE
Confidence 87443 32 22221 24699999999999999988885 999999988777767777889999999998 6777
Q ss_pred EEcCCeEEEEECCCCcEEEEecccCCc--ceEEEEEcC-CCCEEEEEeCCCcEEEEeC
Q 001349 1039 GCKGGTVEIWDQKRQIRIETLQTGTSG--KVQCMALDD-NEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1039 gs~dg~I~vwd~~t~~~~~~l~~~h~~--~I~~l~~Sp-dg~~L~sgs~DG~I~iWdl 1093 (1094)
.-.+..|++||+...+.+..+ .||.. .|..-+|-- +..++++||+|+.|+||+.
T Consensus 413 nL~~qei~LWDl~e~~lv~kY-~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr 469 (519)
T KOG0293|consen 413 NLQDQEIHLWDLEENKLVRKY-FGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHR 469 (519)
T ss_pred EcccCeeEEeecchhhHHHHh-hcccccceEEEeccCCCCcceEEecCCCceEEEEEc
Confidence 778999999999988888888 47765 455556643 4489999999999999984
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-20 Score=195.20 Aligned_cols=261 Identities=16% Similarity=0.215 Sum_probs=195.1
Q ss_pred cccccccc-cCcEEEEeeCCCCeEEEeCCc----ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeE
Q 001349 776 RKYSPLAF-EMVKVLSNGHDSSADFWNHRE----LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLI 848 (1094)
Q Consensus 776 ~~~~~~~~-d~~~l~s~s~dg~I~vWd~~~----~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~ 848 (1094)
+....|++ ....++.+|.||+||+|++.. .-.....|.++|.+++|+.| .+++|+.|+.+++||+.++ .+
T Consensus 30 IS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~---Q~ 106 (347)
T KOG0647|consen 30 ISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG---QV 106 (347)
T ss_pred hheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC---Ce
Confidence 33445555 345677999999999999873 22445679999999999987 9999999999999999998 56
Q ss_pred EEecccCCCeEEEEEecCCC--EEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeC
Q 001349 849 QQIREHTKAVTGLAILQSGE--MLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRN 926 (1094)
Q Consensus 849 ~~l~~H~~~V~sv~fspdg~--~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~ 926 (1094)
..+..|.++|.++.|-+... .|+|||.|+||+.||++.. ..+.....++.++++.+-.....+...++.|++....
T Consensus 107 ~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~--~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~ 184 (347)
T KOG0647|consen 107 SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS--NPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLE 184 (347)
T ss_pred eeeeecccceeEEEEecCCCcceeEecccccceeecccCCC--CeeeeeeccceeeehhccCceeEEEecCCcEEEEEcC
Confidence 67788999999999988655 8999999999999999976 4455555677788877666666566666665555543
Q ss_pred CeEEEEc-----CCCCceEEEEeC--CEEEEEEcCCeEEEEECCCC--ceeEEeccceeec---CCCCCeEEEEEeCCcc
Q 001349 927 GKTKLLN-----SSKYPKCLALVQ--GKVYCGCQDGAIQEIDLATG--TFATIQTGHRKLL---GKANPVHALQVHNGLV 994 (1094)
Q Consensus 927 g~i~l~~-----~~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~--~~~~~~~~~~~~~---~h~~~V~sl~fs~~~~ 994 (1094)
+....+. .+-.++|++... +..+.|+..|.+.+..+..+ +.-..+..++.-. +.-..|++++|+|...
T Consensus 185 n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg 264 (347)
T KOG0647|consen 185 NPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG 264 (347)
T ss_pred CCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccc
Confidence 3222222 123578887753 34799999999999888876 3334444444321 1124688999999999
Q ss_pred EEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC---EEEEEEcC
Q 001349 995 YTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE---LVYLGCKG 1042 (1094)
Q Consensus 995 ~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd---~l~sgs~d 1042 (1094)
.+++.+.|| ++.+||-.....+.+.. +..+|++..|+.+ +.++.+.|
T Consensus 265 tlvTaGsDG-tf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 265 TLVTAGSDG-TFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred eEEEecCCc-eEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 999999997 99999998777777655 8899999999887 34444444
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.2e-21 Score=206.32 Aligned_cols=271 Identities=18% Similarity=0.285 Sum_probs=208.6
Q ss_pred HhhhccccccccccCcEEEEeeCCCCeEEEeCCcce-------------------eec-ccCCCcEEEEEEeCC--EEEE
Q 001349 771 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELV-------------------HVD-SSENGKVLSIACFRD--KIFS 828 (1094)
Q Consensus 771 ~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~~-------------------~~~-~~h~~~V~~l~fspd--~LaS 828 (1094)
.|+...-...+.++..+.++++.+|+|.-|+..+.. ..- .+|...|.+++.++| +|++
T Consensus 140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred cccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence 344455567788899999999999999999865211 011 378899999999998 9999
Q ss_pred EECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecC
Q 001349 829 GHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSN 908 (1094)
Q Consensus 829 gs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~ 908 (1094)
|+.|..|.||+..+. ..++.+.+|.+.|.+++|-.....++++|.|++|++|+++... .....+.|.+.|.++.
T Consensus 220 gg~d~~v~Iw~~~t~--ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s-~vetlyGHqd~v~~Id--- 293 (479)
T KOG0299|consen 220 GGRDRHVQIWDCDTL--EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS-YVETLYGHQDGVLGID--- 293 (479)
T ss_pred cCCCceEEEecCccc--chhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH-HHHHHhCCccceeeec---
Confidence 999999999999999 7889999999999999999888899999999999999998743 1112234444444443
Q ss_pred ceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCE-EEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEE
Q 001349 909 SILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGK-VYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHAL 987 (1094)
Q Consensus 909 ~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~-l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl 987 (1094)
... -.+ +-+|+.|+++++|++..... ..+.+|.+.+.|+
T Consensus 294 ----aL~-----------------------------reR~vtVGgrDrT~rlwKi~eesq-------lifrg~~~sidcv 333 (479)
T KOG0299|consen 294 ----ALS-----------------------------RERCVTVGGRDRTVRLWKIPEESQ-------LIFRGGEGSIDCV 333 (479)
T ss_pred ----hhc-----------------------------ccceEEeccccceeEEEeccccce-------eeeeCCCCCeeeE
Confidence 111 123 44566999999999954443 3566788899999
Q ss_pred EEeCCccEEEEEECCCCEEEEEECCCCeEEEEec--C-----------CCCEEEEEEeCC--EEEEEEcCCeEEEEECCC
Q 001349 988 QVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP--T-----------LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKR 1052 (1094)
Q Consensus 988 ~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~--~-----------~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t 1052 (1094)
+|-++.. +++|+.+| .|.+|++.+.+++.+.. | +.+|++++..|. ++++|+.+|.|++|-+..
T Consensus 334 ~~In~~H-fvsGSdnG-~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~ 411 (479)
T KOG0299|consen 334 AFINDEH-FVSGSDNG-SIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIED 411 (479)
T ss_pred EEecccc-eeeccCCc-eEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecC
Confidence 9976654 57888786 99999999988887765 3 127899999876 999999999999999988
Q ss_pred C----cEEEEecccCCcceEEEEEcCCCCEEEEE-eCCCcEEEE
Q 001349 1053 Q----IRIETLQTGTSGKVQCMALDDNEEFLVIG-TSDGRIQAW 1091 (1094)
Q Consensus 1053 ~----~~~~~l~~~h~~~I~~l~~Spdg~~L~sg-s~DG~I~iW 1091 (1094)
+ +++..+. -.+.|++++|+++|+++++| +....+-=|
T Consensus 412 g~r~i~~l~~ls--~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 412 GLRAINLLYSLS--LVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred Cccccceeeecc--cccEEEEEEEccCCCEEEEeccccccccee
Confidence 7 4555553 56799999999999977665 333344333
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.5e-21 Score=206.21 Aligned_cols=243 Identities=17% Similarity=0.317 Sum_probs=197.0
Q ss_pred eecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcce--e-------------EEEe-cccCCCeEEEEEecCCC
Q 001349 807 HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILH--L-------------IQQI-REHTKAVTGLAILQSGE 868 (1094)
Q Consensus 807 ~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~--~-------------~~~l-~~H~~~V~sv~fspdg~ 868 (1094)
.....|.-+|.+++++|+ +.++++.||+|.-|++.++... . ...- ++|.+.|.+++.|+||+
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 456689999999999997 9999999999999999887311 0 0111 37888999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC--C
Q 001349 869 MLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ--G 946 (1094)
Q Consensus 869 ~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~--~ 946 (1094)
+|++|+.|..|.||+.++.+. ......|.+.|. +++|.. +
T Consensus 216 ylatgg~d~~v~Iw~~~t~eh-v~~~~ghr~~V~-------------------------------------~L~fr~gt~ 257 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEH-VKVFKGHRGAVS-------------------------------------SLAFRKGTS 257 (479)
T ss_pred EEEecCCCceEEEecCcccch-hhccccccccee-------------------------------------eeeeecCcc
Confidence 999999999999999999741 111233344444 444432 4
Q ss_pred EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCE
Q 001349 947 KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEV 1026 (1094)
Q Consensus 947 ~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v 1026 (1094)
.+++++.|++|++|++.....+ .++.||.+.|..+....-...+..++.| +++++|++..-..+....+.+.+
T Consensus 258 ~lys~s~Drsvkvw~~~~~s~v------etlyGHqd~v~~IdaL~reR~vtVGgrD-rT~rlwKi~eesqlifrg~~~si 330 (479)
T KOG0299|consen 258 ELYSASADRSVKVWSIDQLSYV------ETLYGHQDGVLGIDALSRERCVTVGGRD-RTVRLWKIPEESQLIFRGGEGSI 330 (479)
T ss_pred ceeeeecCCceEEEehhHhHHH------HHHhCCccceeeechhcccceEEecccc-ceeEEEeccccceeeeeCCCCCe
Confidence 5999999999999999887776 6788999999999998777777777788 49999999655444444477789
Q ss_pred EEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEecccCC-----------cceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1027 RAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGTS-----------GKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1027 ~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~-----------~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
.+++|-.+ .+++||.+|.|.+|++.+.+++.+....|. .+|++++..|..+++++|+.+|.|++|.++
T Consensus 331 dcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 331 DCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIE 410 (479)
T ss_pred eeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEec
Confidence 99998776 999999999999999999999888765552 279999999999999999999999999863
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-20 Score=201.92 Aligned_cols=236 Identities=19% Similarity=0.355 Sum_probs=200.7
Q ss_pred CcEEEEEEeC--CEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEE
Q 001349 814 GKVLSIACFR--DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHC 891 (1094)
Q Consensus 814 ~~V~~l~fsp--d~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~ 891 (1094)
..+.++...+ +.+.+|+.|.++.++|...+ +.+.+++||+..|+.+.|+|+...+++++.|..|+||...... ..
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~--q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-~~ 296 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSN--QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-EP 296 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchh--hhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-Cc
Confidence 4566666666 58999999999999999998 7899999999999999999999999999999999999987754 33
Q ss_pred EEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEe
Q 001349 892 VQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQ 971 (1094)
Q Consensus 892 ~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~ 971 (1094)
.....|..+|+.+. ..|.|.+ +++++.||+..+.|+++|..+...
T Consensus 297 ~~~~~h~~~V~~ls-------~h~tgeY----------------------------llsAs~d~~w~Fsd~~~g~~lt~v 341 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLS-------LHPTGEY----------------------------LLSASNDGTWAFSDISSGSQLTVV 341 (506)
T ss_pred cccccccccceeee-------eccCCcE----------------------------EEEecCCceEEEEEccCCcEEEEE
Confidence 34445677787776 6666664 788899999999999999887432
Q ss_pred ccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEE
Q 001349 972 TGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIW 1048 (1094)
Q Consensus 972 ~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vw 1048 (1094)
.. ....-.+++.+|||||.++++|..|| .|+|||+.++..+..|. |.++|..++|+.+ +++++++|+.|++|
T Consensus 342 s~----~~s~v~~ts~~fHpDgLifgtgt~d~-~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lw 416 (506)
T KOG0289|consen 342 SD----ETSDVEYTSAAFHPDGLIFGTGTPDG-VVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLW 416 (506)
T ss_pred ee----ccccceeEEeeEcCCceEEeccCCCc-eEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEE
Confidence 21 12234589999999999999999997 99999999999888998 7899999999999 79999999999999
Q ss_pred ECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1049 DQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1049 d~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
|++..+.+.++.......|.++.|.+.|.+|+.++.|=+|++++
T Consensus 417 DLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 417 DLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred EehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 99998888888655555799999999999999998887777664
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-21 Score=209.70 Aligned_cols=244 Identities=18% Similarity=0.329 Sum_probs=196.0
Q ss_pred cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 001349 804 ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 881 (1094)
Q Consensus 804 ~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~v 881 (1094)
.....+..|.+.|..+.|-++ .|++|+.|..|++|++..++...+.++.|..+.|+++.|.++++++++++.|+.+++
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~ 245 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRL 245 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceee
Confidence 345567789999999999885 999999999999999998866688899999999999999999999999999999999
Q ss_pred EECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEE
Q 001349 882 WSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEID 961 (1094)
Q Consensus 882 Wdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwD 961 (1094)
|+++........ ..|.+.|.++. |... ...+++|+.|.+|+.||
T Consensus 246 Wnvd~~r~~~TL-sGHtdkVt~ak-------~~~~----------------------------~~~vVsgs~DRtiK~WD 289 (459)
T KOG0288|consen 246 WNVDSLRLRHTL-SGHTDKVTAAK-------FKLS----------------------------HSRVVSGSADRTIKLWD 289 (459)
T ss_pred eeccchhhhhhh-cccccceeeeh-------hhcc----------------------------ccceeeccccchhhhhh
Confidence 999987522211 12455555554 2111 12388999999999999
Q ss_pred CCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEE
Q 001349 962 LATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLG 1039 (1094)
Q Consensus 962 l~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sg 1039 (1094)
+....+.... +. ...+..|... ...++++..|+ .|++||.++..+....+.++.|+++..+++ .+.+.
T Consensus 290 l~k~~C~kt~-----l~--~S~cnDI~~~--~~~~~SgH~Dk-kvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLss 359 (459)
T KOG0288|consen 290 LQKAYCSKTV-----LP--GSQCNDIVCS--ISDVISGHFDK-KVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSS 359 (459)
T ss_pred hhhhheeccc-----cc--cccccceEec--ceeeeeccccc-ceEEEeccCCceeeEeecCcceeeEeeccCCeEEeee
Confidence 9987776321 11 1344455544 45567777775 899999999999999998889999999998 67788
Q ss_pred EcCCeEEEEECCCCcEEEEeccc---CCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1040 CKGGTVEIWDQKRQIRIETLQTG---TSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1040 s~dg~I~vwd~~t~~~~~~l~~~---h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
+.|.++.+.|+++......+... -....+.+.|||++.|+++||.||.|+||++
T Consensus 360 sRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v 416 (459)
T KOG0288|consen 360 SRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSV 416 (459)
T ss_pred cCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEc
Confidence 99999999999998887776311 1124899999999999999999999999987
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-19 Score=208.83 Aligned_cols=296 Identities=17% Similarity=0.244 Sum_probs=231.7
Q ss_pred CcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEec-ccCCCe
Q 001349 785 MVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIR-EHTKAV 858 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~-~H~~~V 858 (1094)
-..++.|..+|+|.++|++ +.+..+....+.|++++|..| .+++|+..|.+.+||++.. +.+..+. .|.+.|
T Consensus 214 LDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k--kl~~v~~nah~~sv 291 (910)
T KOG1539|consen 214 LDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK--KLINVTRNAHYGSV 291 (910)
T ss_pred ceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCC--eeeeeeeccccCCc
Confidence 4578999999999999998 444444444699999999965 9999999999999999988 4555444 899999
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCce--EEEEe-cccCc------------------------------------
Q 001349 859 TGLAILQSGEMLYSGSLDKTARVWSIGNEEI--HCVQV-HDIKD------------------------------------ 899 (1094)
Q Consensus 859 ~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~--~~~~~-~~~~~------------------------------------ 899 (1094)
....|.|....++|++.|+.+++|=.+++.. +.+.. ..|..
T Consensus 292 ~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~ 371 (910)
T KOG1539|consen 292 TGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQ 371 (910)
T ss_pred ccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhH
Confidence 9999999999999999999999986553220 00000 00000
Q ss_pred -------------------------cceeeeec------------------------------------C----------
Q 001349 900 -------------------------QIQNLAVS------------------------------------N---------- 908 (1094)
Q Consensus 900 -------------------------~V~~v~~~------------------------------------~---------- 908 (1094)
+|..+++. +
T Consensus 372 ~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~ 451 (910)
T KOG1539|consen 372 ELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINA 451 (910)
T ss_pred hhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcce
Confidence 11111100 0
Q ss_pred ceEEEeeCCCeEEEEEeCCeEEEEcC---------------CCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEe
Q 001349 909 SILCFIPQGAGIKVHLRNGKTKLLNS---------------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQ 971 (1094)
Q Consensus 909 ~~~~fspdg~~l~~~~~~g~i~l~~~---------------~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~ 971 (1094)
..++.++.|+..+++...|.+..++. .+.|..++.+. ..+++++.+|.+.+||..+...+...
T Consensus 452 ~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l 531 (910)
T KOG1539|consen 452 TAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSL 531 (910)
T ss_pred EEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeee
Confidence 04567888999999999999998874 34577777764 34899999999999999988755322
Q ss_pred ccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEE
Q 001349 972 TGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIW 1048 (1094)
Q Consensus 972 ~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vw 1048 (1094)
. -...+..+..+.....++.+..| -.|+++|+.+.+.++.|. |+..|+.++|||| ++++++.|++|++|
T Consensus 532 ~-------l~~~~~~iv~hr~s~l~a~~~dd-f~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~w 603 (910)
T KOG1539|consen 532 R-------LGSSITGIVYHRVSDLLAIALDD-FSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTW 603 (910)
T ss_pred c-------cCCCcceeeeeehhhhhhhhcCc-eeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEE
Confidence 1 23467888888776676766655 599999999999999998 8899999999999 89999999999999
Q ss_pred ECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCC-CcEEEEe
Q 001349 1049 DQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSD-GRIQAWG 1092 (1094)
Q Consensus 1049 d~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~D-G~I~iWd 1092 (1094)
|+.++.++..+. -..+++++.|||+|.+|+|+..| .-|++|.
T Consensus 604 Dlpt~~lID~~~--vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 604 DLPTGTLIDGLL--VDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred eccCcceeeeEe--cCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 999999999884 56689999999999999999998 5699994
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=195.02 Aligned_cols=246 Identities=17% Similarity=0.303 Sum_probs=192.9
Q ss_pred eecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCC------------C----cceeEEEecccCCCeEEEEEecCCC
Q 001349 807 HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG------------S----ILHLIQQIREHTKAVTGLAILQSGE 868 (1094)
Q Consensus 807 ~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t------------~----~~~~~~~l~~H~~~V~sv~fspdg~ 868 (1094)
..+..|.+++.+.+|++| ++++|+.|..|+|.|+.. + .-..++++..|.+.|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 346689999999999998 999999999999999861 1 1146789999999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCc-eEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCE
Q 001349 869 MLYSGSLDKTARVWSIGNEE-IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGK 947 (1094)
Q Consensus 869 ~LaSgs~DgtI~vWdi~~~~-~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~ 947 (1094)
.|++|+.|++|+++|+.... .+....+....+|.++. |.|.|.+
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiS-------fHPsGef---------------------------- 230 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSIS-------FHPSGEF---------------------------- 230 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEe-------ecCCCce----------------------------
Confidence 99999999999999997643 22233344455677776 7777764
Q ss_pred EEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec--C-CC
Q 001349 948 VYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP--T-LS 1024 (1094)
Q Consensus 948 l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~--~-~~ 1024 (1094)
+++|....++++||+.+-++..... .-..|.+.|+++.+++.+.+.++++.|| .|++||--+++++.++. | +.
T Consensus 231 llvgTdHp~~rlYdv~T~Qcfvsan---Pd~qht~ai~~V~Ys~t~~lYvTaSkDG-~IklwDGVS~rCv~t~~~AH~gs 306 (430)
T KOG0640|consen 231 LLVGTDHPTLRLYDVNTYQCFVSAN---PDDQHTGAITQVRYSSTGSLYVTASKDG-AIKLWDGVSNRCVRTIGNAHGGS 306 (430)
T ss_pred EEEecCCCceeEEeccceeEeeecC---cccccccceeEEEecCCccEEEEeccCC-cEEeeccccHHHHHHHHhhcCCc
Confidence 6777888899999999888764332 3467999999999999999999999998 99999999999999987 3 57
Q ss_pred CEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccC--Cc---ceEEEEEcCCCCEEEEEeC-CCcEEEEe
Q 001349 1025 EVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGT--SG---KVQCMALDDNEEFLVIGTS-DGRIQAWG 1092 (1094)
Q Consensus 1025 ~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h--~~---~I~~l~~Spdg~~L~sgs~-DG~I~iWd 1092 (1094)
.|.+..|..+ ++.+.+.|..+++|.+.++.++..+. |. .+ .-+...|+....+++.-.+ .+.+.-||
T Consensus 307 evcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Yt-GAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWd 381 (430)
T KOG0640|consen 307 EVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYT-GAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWD 381 (430)
T ss_pred eeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEe-cCCcccchhhhhhhhhcCccceEEccccccCceeecc
Confidence 7999999887 89999999999999999999998884 32 11 1233445555555443322 23445554
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.4e-21 Score=214.79 Aligned_cols=231 Identities=23% Similarity=0.378 Sum_probs=189.9
Q ss_pred EEEEEECCCeEEEEecCCCcc----eeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCcc
Q 001349 825 KIFSGHSDGTIKVWTGRGSIL----HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQ 900 (1094)
Q Consensus 825 ~LaSgs~Dg~I~vWd~~t~~~----~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~ 900 (1094)
+|+||+.||+|++|++....- ..+..++.|.++|+.+....+|+.|+|+|.|-+|++|+...+...|...
T Consensus 39 yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~st------ 112 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMST------ 112 (735)
T ss_pred eEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhh------
Confidence 799999999999999875421 2477889999999999999999999999999999999988753111111
Q ss_pred ceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEE-e--CCEEEEEEcCCeEEEEECCCCce--eEEecc--
Q 001349 901 IQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLAL-V--QGKVYCGCQDGAIQEIDLATGTF--ATIQTG-- 973 (1094)
Q Consensus 901 V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~-s--~~~l~sgs~Dg~I~iwDl~~~~~--~~~~~~-- 973 (1094)
+-.|..+|.|+++ . ...+++|+-|+.|.+||+.++.. +..+..
T Consensus 113 ------------------------------ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t 162 (735)
T KOG0308|consen 113 ------------------------------IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVT 162 (735)
T ss_pred ------------------------------hhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccc
Confidence 1134455666665 2 23589999999999999998843 221111
Q ss_pred ceee-cCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEE
Q 001349 974 HRKL-LGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWD 1049 (1094)
Q Consensus 974 ~~~~-~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd 1049 (1094)
...+ .|+..+|++++.++.+..+++|+..+ .+++||.++++.+..+. |..+|..+.+++| .++++|.||+|++||
T Consensus 163 ~~sl~sG~k~siYSLA~N~t~t~ivsGgtek-~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWd 241 (735)
T KOG0308|consen 163 VNSLGSGPKDSIYSLAMNQTGTIIVSGGTEK-DLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWD 241 (735)
T ss_pred cccCCCCCccceeeeecCCcceEEEecCccc-ceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeee
Confidence 0122 38889999999999999999999885 99999999999888888 7899999999998 799999999999999
Q ss_pred CCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1050 QKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1050 ~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
+...+++.++ ..|...|+++..+|+-..+++|+.||.|..=|+
T Consensus 242 LgqQrCl~T~-~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl 284 (735)
T KOG0308|consen 242 LGQQRCLATY-IVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDL 284 (735)
T ss_pred ccccceeeeE-EeccCceEEEeeCCCcceEEecCCCCcEEeccc
Confidence 9999999999 589989999999999999999999999887554
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.1e-20 Score=207.81 Aligned_cols=316 Identities=15% Similarity=0.262 Sum_probs=240.3
Q ss_pred HHhhhccccccccc---cCcEEEEeeCCCCeEEEeCC--c---------------------ce----------eecccCC
Q 001349 770 KGLRELRKYSPLAF---EMVKVLSNGHDSSADFWNHR--E---------------------LV----------HVDSSEN 813 (1094)
Q Consensus 770 ~~~~~~~~~~~~~~---d~~~l~s~s~dg~I~vWd~~--~---------------------~~----------~~~~~h~ 813 (1094)
++|...++...|.. +..+++++|.|..||||.+. . .. ..+.||+
T Consensus 188 ~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHe 267 (764)
T KOG1063|consen 188 EGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHE 267 (764)
T ss_pred eccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcc
Confidence 45555555444443 44589999999999999653 0 00 2345899
Q ss_pred CcEEEEEEeCC--EEEEEECCCeEEEEecCC--CcceeEEE---ecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 001349 814 GKVLSIACFRD--KIFSGHSDGTIKVWTGRG--SILHLIQQ---IREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGN 886 (1094)
Q Consensus 814 ~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t--~~~~~~~~---l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~ 886 (1094)
+.|+++.|+|. .|.|++.|.++.+|...+ |-+..... ..+..+..+..-|+|+++.+++-+.-|-.++|....
T Consensus 268 DWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d 347 (764)
T KOG1063|consen 268 DWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKD 347 (764)
T ss_pred cceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccC
Confidence 99999999997 899999999999997654 43433333 334456789999999999999999999999999433
Q ss_pred Cc--eEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC----------------CCCceEEEEeC-C-
Q 001349 887 EE--IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS----------------SKYPKCLALVQ-G- 946 (1094)
Q Consensus 887 ~~--~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~----------------~~~v~~l~~s~-~- 946 (1094)
.. ........|-..|.++. |.|.|.++.+.+.|.+.++|.. +-..+|+++-+ +
T Consensus 348 ~~~w~~~~~iSGH~~~V~dv~-------W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~ 420 (764)
T KOG1063|consen 348 KTFWTQEPVISGHVDGVKDVD-------WDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL 420 (764)
T ss_pred ccceeeccccccccccceeee-------ecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence 22 12222345677888888 9999999999999988888753 23478888876 3
Q ss_pred EEEEEEcCCeEEEEECCC-------------------------------------------Cce----eEE---------
Q 001349 947 KVYCGCQDGAIQEIDLAT-------------------------------------------GTF----ATI--------- 970 (1094)
Q Consensus 947 ~l~sgs~Dg~I~iwDl~~-------------------------------------------~~~----~~~--------- 970 (1094)
++++|.....+++|+... |.. ...
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 477777778888887621 000 000
Q ss_pred --------------eccceeecCCCCCeEEEEEeCCccEEEEEECCC----CEEEEEECCCCeEEEEec-CCCCEEEEEE
Q 001349 971 --------------QTGHRKLLGKANPVHALQVHNGLVYTASTSLDG----AAVKMWSTSNYNMVGSLP-TLSEVRAMVV 1031 (1094)
Q Consensus 971 --------------~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg----~~I~iwd~~~~~~~~~~~-~~~~v~~l~~ 1031 (1094)
++-..++.||...|++++.+|++.+++++.... ..|++|++.+...++.+. |.-.|+.++|
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~F 580 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAF 580 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEE
Confidence 011125779999999999999999999986432 379999999998888777 7788999999
Q ss_pred eCC--EEEEEEcCCeEEEEECCCCc----EEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1032 SSE--LVYLGCKGGTVEIWDQKRQI----RIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1032 spd--~l~sgs~dg~I~vwd~~t~~----~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
||| +|++.|.|.++.+|...... ..... ..|..-|++..|+||+.+++|+|.|.+|++|..
T Consensus 581 Spdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~-k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~ 647 (764)
T KOG1063|consen 581 SPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACL-KAHTRIIWDCSWSPDEKYFATASRDKKVKVWEE 647 (764)
T ss_pred CCCCcEEEEeecCceEEeeeeecccchhhhhccc-cccceEEEEcccCcccceeEEecCCceEEEEec
Confidence 999 99999999999999875432 12223 479999999999999999999999999999975
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.7e-21 Score=217.97 Aligned_cols=232 Identities=21% Similarity=0.300 Sum_probs=183.5
Q ss_pred EEEEEEeC---CEEEEEECCCeEEEEecCC-CcceeEEEecccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCceE
Q 001349 816 VLSIACFR---DKIFSGHSDGTIKVWTGRG-SILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIH 890 (1094)
Q Consensus 816 V~~l~fsp---d~LaSgs~Dg~I~vWd~~t-~~~~~~~~l~~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~~ 890 (1094)
+..|.|+. ++|||++..|.|.+||+.. .+.+.+..|.+|+..|++++|++ ...+|+|||.||+|++||++..+-.
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence 34566764 4999999999999999986 11267778999999999999998 5789999999999999999886411
Q ss_pred EEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEE
Q 001349 891 CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATI 970 (1094)
Q Consensus 891 ~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~ 970 (1094)
.......+.|..+. |+|.- ++.++++...|.+++||++....-.
T Consensus 170 -~t~~~nSESiRDV~-------fsp~~---------------------------~~~F~s~~dsG~lqlWDlRqp~r~~- 213 (839)
T KOG0269|consen 170 -STFRSNSESIRDVK-------FSPGY---------------------------GNKFASIHDSGYLQLWDLRQPDRCE- 213 (839)
T ss_pred -ccccccchhhhcee-------eccCC---------------------------CceEEEecCCceEEEeeccCchhHH-
Confidence 11122344455555 44332 2368999999999999999765432
Q ss_pred eccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCe--EEEEecCCCCEEEEEEeCC---EEEEEE--cCC
Q 001349 971 QTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN--MVGSLPTLSEVRAMVVSSE---LVYLGC--KGG 1043 (1094)
Q Consensus 971 ~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~--~~~~~~~~~~v~~l~~spd---~l~sgs--~dg 1043 (1094)
..+.+|.++|.++.|+|++.++|+|+.|+ +|+|||+.+++ ...++....++..+.|-|+ .|++++ .|-
T Consensus 214 ----~k~~AH~GpV~c~nwhPnr~~lATGGRDK-~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dt 288 (839)
T KOG0269|consen 214 ----KKLTAHNGPVLCLNWHPNREWLATGGRDK-MVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDT 288 (839)
T ss_pred ----HHhhcccCceEEEeecCCCceeeecCCCc-cEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccc
Confidence 57789999999999999999999999995 99999998654 4566667899999999998 577765 578
Q ss_pred eEEEEECCCCcE-EEEecccCCcceEEEEEcC-CCCEEEEEeCCCcEE
Q 001349 1044 TVEIWDQKRQIR-IETLQTGTSGKVQCMALDD-NEEFLVIGTSDGRIQ 1089 (1094)
Q Consensus 1044 ~I~vwd~~t~~~-~~~l~~~h~~~I~~l~~Sp-dg~~L~sgs~DG~I~ 1089 (1094)
.|+|||++..-. ..++ ..|...++.++|.. |...+.+++.||+|.
T Consensus 289 sV~VWDvrRPYIP~~t~-~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 289 SVHVWDVRRPYIPYATF-LEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred eEEEEeeccccccceee-eccCccccceeccCCCceeeEeecCccHHH
Confidence 999999987654 4455 68999999999954 456789999999864
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-18 Score=193.24 Aligned_cols=258 Identities=14% Similarity=0.148 Sum_probs=183.1
Q ss_pred cEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EE-EEEECCCeEEEEecCCCcceeEEEecccCCCeEE
Q 001349 786 VKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KI-FSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTG 860 (1094)
Q Consensus 786 ~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~L-aSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~s 860 (1094)
..+++++.|+.|++||.. .....+..|. .+.+++|+|+ .+ ++++.++.|++||..++ ..+..+..+.. +..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~--~~~~~~~~~~~-~~~ 77 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATG--EVIGTLPSGPD-PEL 77 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCC--cEEEeccCCCC-ccE
Confidence 467899999999999986 3444555443 4678999987 44 67788999999999988 55666655544 567
Q ss_pred EEEecCCCEEEEE-eCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCce
Q 001349 861 LAILQSGEMLYSG-SLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPK 939 (1094)
Q Consensus 861 v~fspdg~~LaSg-s~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~ 939 (1094)
++|+|+++.++++ +.|++|++||+.+++ .+........+..+. |+|+|..
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~--~~~~~~~~~~~~~~~-------~~~dg~~-------------------- 128 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRK--VLAEIPVGVEPEGMA-------VSPDGKI-------------------- 128 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCe--EEeEeeCCCCcceEE-------ECCCCCE--------------------
Confidence 8999999977654 568999999998864 222222222233343 8888875
Q ss_pred EEEEeCCEEEEEEcCC-eEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEE-CCCCEEEEEECCCCeEE
Q 001349 940 CLALVQGKVYCGCQDG-AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS-LDGAAVKMWSTSNYNMV 1017 (1094)
Q Consensus 940 ~l~~s~~~l~sgs~Dg-~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s-~Dg~~I~iwd~~~~~~~ 1017 (1094)
+++++.++ .+..||..++...... . ....+..+.|++++.+++.++ .++ .|++||+.+++.+
T Consensus 129 --------l~~~~~~~~~~~~~d~~~~~~~~~~------~-~~~~~~~~~~s~dg~~l~~~~~~~~-~v~i~d~~~~~~~ 192 (300)
T TIGR03866 129 --------VVNTSETTNMAHFIDTKTYEIVDNV------L-VDQRPRFAEFTADGKELWVSSEIGG-TVSVIDVATRKVI 192 (300)
T ss_pred --------EEEEecCCCeEEEEeCCCCeEEEEE------E-cCCCccEEEECCCCCEEEEEcCCCC-EEEEEEcCcceee
Confidence 34444443 4677898877654321 1 122456789999988775544 454 9999999999877
Q ss_pred EEecCC--------CCEEEEEEeCC--EEEE-EEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEE-eCC
Q 001349 1018 GSLPTL--------SEVRAMVVSSE--LVYL-GCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIG-TSD 1085 (1094)
Q Consensus 1018 ~~~~~~--------~~v~~l~~spd--~l~s-gs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sg-s~D 1085 (1094)
..+... .....++|+|+ ++++ .+.++.|.+||..+++....+. +...+.+++|+|+|++|+++ +.+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~ 270 (300)
T TIGR03866 193 KKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL--VGQRVWQLAFTPDEKYLLTTNGVS 270 (300)
T ss_pred eeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--eCCCcceEEECCCCCEEEEEcCCC
Confidence 766421 12356888988 4443 4557789999999998877663 34479999999999999886 468
Q ss_pred CcEEEEeCC
Q 001349 1086 GRIQAWGLS 1094 (1094)
Q Consensus 1086 G~I~iWdls 1094 (1094)
|+|.+||+.
T Consensus 271 ~~i~v~d~~ 279 (300)
T TIGR03866 271 NDVSVIDVA 279 (300)
T ss_pred CeEEEEECC
Confidence 999999974
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=185.24 Aligned_cols=270 Identities=18% Similarity=0.251 Sum_probs=205.9
Q ss_pred cCcEEEEeeCCCCeEEEeCCcc-----------------eeecccCCCcEEEEEEeC-C--EEEEEECCCeEEEEecCCC
Q 001349 784 EMVKVLSNGHDSSADFWNHREL-----------------VHVDSSENGKVLSIACFR-D--KIFSGHSDGTIKVWTGRGS 843 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~~~-----------------~~~~~~h~~~V~~l~fsp-d--~LaSgs~Dg~I~vWd~~t~ 843 (1094)
.|.++++|+.||.|.+||++.. .....+|.-.|..+.|.| | .+.+++.|.+++|||..|-
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl 134 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL 134 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccc
Confidence 5889999999999999998611 122346888999999999 3 9999999999999999987
Q ss_pred cceeEEEecccCCCeEEEEEec---CCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeE
Q 001349 844 ILHLIQQIREHTKAVTGLAILQ---SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGI 920 (1094)
Q Consensus 844 ~~~~~~~l~~H~~~V~sv~fsp---dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l 920 (1094)
+....|+ ..+.|.+-++|| ...++++|.+|-.|++-|+.+|.. .-....|.+.|.++. |+|...++
T Consensus 135 --Q~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~-sH~LsGHr~~vlaV~-------Wsp~~e~v 203 (397)
T KOG4283|consen 135 --QEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF-SHTLSGHRDGVLAVE-------WSPSSEWV 203 (397)
T ss_pred --eeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc-eeeeccccCceEEEE-------eccCceeE
Confidence 5555554 567888889988 345788888999999999999862 222345677888887 77766653
Q ss_pred EEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCC-ceeEEeccc--------eeecCCCCCeEEEEEeC
Q 001349 921 KVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATG-TFATIQTGH--------RKLLGKANPVHALQVHN 991 (1094)
Q Consensus 921 ~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~-~~~~~~~~~--------~~~~~h~~~V~sl~fs~ 991 (1094)
+++|+.||.|++||++.. .+...+..+ +.-..|.+.|+.++|..
T Consensus 204 ---------------------------LatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS 256 (397)
T KOG4283|consen 204 ---------------------------LATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS 256 (397)
T ss_pred ---------------------------EEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc
Confidence 899999999999999864 333322221 12456889999999999
Q ss_pred CccEEEEEECCCCEEEEEECCCCeEEE-Ee---cC----CCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccC
Q 001349 992 GLVYTASTSLDGAAVKMWSTSNYNMVG-SL---PT----LSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGT 1063 (1094)
Q Consensus 992 ~~~~las~s~Dg~~I~iwd~~~~~~~~-~~---~~----~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h 1063 (1094)
++.++++++.|+ .+++|+..+|...- .+ .+ +-.+.--+.+.+.++.--.++.+.++++-.+..+..+ .+|
T Consensus 257 d~~~l~~~gtd~-r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l-~~h 334 (397)
T KOG4283|consen 257 DARYLASCGTDD-RIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRL-STH 334 (397)
T ss_pred cchhhhhccCcc-ceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEee-ecc
Confidence 999999999997 99999998875321 11 11 1112211222333444445699999999999999999 588
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1064 SGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1064 ~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
...|.+.++-|+-+...+|+.|+.|..|-.
T Consensus 335 ~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 335 LKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cceeeEEeecCchhhhhccccCCccccccc
Confidence 889999999999999999999999999953
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=197.64 Aligned_cols=230 Identities=20% Similarity=0.340 Sum_probs=186.9
Q ss_pred CcEEEEeeCC-CCeEEEeCCcceee--cccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeE
Q 001349 785 MVKVLSNGHD-SSADFWNHRELVHV--DSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVT 859 (1094)
Q Consensus 785 ~~~l~s~s~d-g~I~vWd~~~~~~~--~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~ 859 (1094)
+.+++++... ..+.+|.+...... ..--.++|.|++-+|+ +++.|+..|.|++|.+.+| ..+..+.+|-..|+
T Consensus 50 ~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG--~LL~v~~aHYQ~IT 127 (476)
T KOG0646|consen 50 NEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSG--ILLNVLSAHYQSIT 127 (476)
T ss_pred hhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccc--cHHHHHHhhcccee
Confidence 3566666544 57889998743322 2334688999999986 7777779999999999999 78888899999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCce
Q 001349 860 GLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPK 939 (1094)
Q Consensus 860 sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~ 939 (1094)
++.|+-||.+|+|||.||.|.+|++.+
T Consensus 128 cL~fs~dgs~iiTgskDg~V~vW~l~~----------------------------------------------------- 154 (476)
T KOG0646|consen 128 CLKFSDDGSHIITGSKDGAVLVWLLTD----------------------------------------------------- 154 (476)
T ss_pred EEEEeCCCcEEEecCCCccEEEEEEEe-----------------------------------------------------
Confidence 999999999999999999999999855
Q ss_pred EEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC--ccEEEEEECCCCEEEEEECCCCeEE
Q 001349 940 CLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG--LVYTASTSLDGAAVKMWSTSNYNMV 1017 (1094)
Q Consensus 940 ~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~--~~~las~s~Dg~~I~iwd~~~~~~~ 1017 (1094)
++.+..|+ +-.+. ..+..|.-+|+.+...++ ..++++.|.| +++++||+..+..+
T Consensus 155 --------lv~a~~~~--------~~~p~------~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D-~t~k~wdlS~g~LL 211 (476)
T KOG0646|consen 155 --------LVSADNDH--------SVKPL------HIFSDHTLSITDLQIGSGGTNARLYTASED-RTIKLWDLSLGVLL 211 (476)
T ss_pred --------ecccccCC--------Cccce------eeeccCcceeEEEEecCCCccceEEEecCC-ceEEEEEeccceee
Confidence 22222222 12222 466778889999988654 4578888888 49999999999999
Q ss_pred EEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCC----------------CcEEEEecccCCc--ceEEEEEcCCCC
Q 001349 1018 GSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKR----------------QIRIETLQTGTSG--KVQCMALDDNEE 1077 (1094)
Q Consensus 1018 ~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t----------------~~~~~~l~~~h~~--~I~~l~~Spdg~ 1077 (1094)
.++..+..+.+++++|- .+++|+.+|.|.+.++.. +..+..+ .||.+ .|+|++++.||.
T Consensus 212 lti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~-~Gh~~~~~ITcLais~Dgt 290 (476)
T KOG0646|consen 212 LTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVL-VGHENESAITCLAISTDGT 290 (476)
T ss_pred EEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeee-ccccCCcceeEEEEecCcc
Confidence 99999999999999997 899999999999988643 2244555 58888 999999999999
Q ss_pred EEEEEeCCCcEEEEeC
Q 001349 1078 FLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1078 ~L~sgs~DG~I~iWdl 1093 (1094)
.|++|+.||+|.|||+
T Consensus 291 lLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 291 LLLSGDEDGKVCVWDI 306 (476)
T ss_pred EEEeeCCCCCEEEEec
Confidence 9999999999999997
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7e-20 Score=207.53 Aligned_cols=237 Identities=18% Similarity=0.306 Sum_probs=197.7
Q ss_pred ceeecccCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEE-EEEec-CCCEEEEEeCCCcEEE
Q 001349 805 LVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTG-LAILQ-SGEMLYSGSLDKTARV 881 (1094)
Q Consensus 805 ~~~~~~~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~s-v~fsp-dg~~LaSgs~DgtI~v 881 (1094)
..+.+.+|...|..+++.++ .++++|.||++++|+-..+.+.....+.+|.+.|.. +++-+ ++-.+++|+.|++|.+
T Consensus 6 ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v 85 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIV 85 (745)
T ss_pred eEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEE
Confidence 45678899999999998887 799999999999999988876677788899998887 88876 5556999999999999
Q ss_pred EECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEe-CCEEEEEEcCCeEEEE
Q 001349 882 WSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV-QGKVYCGCQDGAIQEI 960 (1094)
Q Consensus 882 Wdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s-~~~l~sgs~Dg~I~iw 960 (1094)
|...+.. ...... .|...|+|+... ++.+++||.|.++++|
T Consensus 86 ~~~~~~~-P~~~Lk-------------------------------------gH~snVC~ls~~~~~~~iSgSWD~TakvW 127 (745)
T KOG0301|consen 86 FKLSQAE-PLYTLK-------------------------------------GHKSNVCSLSIGEDGTLISGSWDSTAKVW 127 (745)
T ss_pred EecCCCC-chhhhh-------------------------------------ccccceeeeecCCcCceEecccccceEEe
Confidence 9998853 111122 234445555533 3458999999999999
Q ss_pred ECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC-EEEE
Q 001349 961 DLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE-LVYL 1038 (1094)
Q Consensus 961 Dl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd-~l~s 1038 (1094)
-.. ++. ..+.+|...|.++.+-|+. .+++|+.| ++|++|.- ++.+++|. |.+-|+++++-++ .+++
T Consensus 128 ~~~--~l~------~~l~gH~asVWAv~~l~e~-~~vTgsaD-KtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flS 195 (745)
T KOG0301|consen 128 RIG--ELV------YSLQGHTASVWAVASLPEN-TYVTGSAD-KTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLS 195 (745)
T ss_pred cch--hhh------cccCCcchheeeeeecCCC-cEEeccCc-ceeeeccC--CchhhhhccchhheeeeEEecCCCeEe
Confidence 754 433 4578999999999999888 66888888 59999975 77888888 7889999999998 9999
Q ss_pred EEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1039 GCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1039 gs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
++.||.|+.|++ +|.++..+ .||...|.++...+++..++++++|++++||+.
T Consensus 196 csNDg~Ir~w~~-~ge~l~~~-~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~ 248 (745)
T KOG0301|consen 196 CSNDGSIRLWDL-DGEVLLEM-HGHTNFVYSISMALSDGLIVSTGEDRTLRIWKK 248 (745)
T ss_pred ecCCceEEEEec-cCceeeee-eccceEEEEEEecCCCCeEEEecCCceEEEeec
Confidence 999999999999 78888888 599999999998888999999999999999985
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-19 Score=194.28 Aligned_cols=270 Identities=13% Similarity=0.252 Sum_probs=212.9
Q ss_pred CCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCc
Q 001349 812 ENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE-MLYSGSLDKTARVWSIGNEE 888 (1094)
Q Consensus 812 h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~-~LaSgs~DgtI~vWdi~~~~ 888 (1094)
..+.|+++.|+|. .+.+++.||+++||.+.+.....++.+.--..+|.+..|.|+|. .++++|.....+.||+.+.+
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 3689999999996 99999999999999988765567777766678999999999999 99999999999999999876
Q ss_pred eEEEEecc-cC-ccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC-----------CCCceEEEEeC--CEEEEEEc
Q 001349 889 IHCVQVHD-IK-DQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS-----------SKYPKCLALVQ--GKVYCGCQ 953 (1094)
Q Consensus 889 ~~~~~~~~-~~-~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~-----------~~~v~~l~~s~--~~l~sgs~ 953 (1094)
...+.... +. ..+.... +++++++|++.+.+|.|.+... .+.+..+.|+. ..|++.+.
T Consensus 292 ~~k~~~~~g~e~~~~e~Fe-------VShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~ 364 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFE-------VSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGG 364 (514)
T ss_pred cccccCCCCcccchhheeE-------ecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcC
Confidence 43333221 11 1333333 7999999999999999988764 45677888863 34888889
Q ss_pred CCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCC------CeEEEEec-CCCCE
Q 001349 954 DGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN------YNMVGSLP-TLSEV 1026 (1094)
Q Consensus 954 Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~------~~~~~~~~-~~~~v 1026 (1094)
+|.|.+||+++..++..+.....+ .-++++.+.++.|+|+|+..| .|.|||..+ .+++.++. -...|
T Consensus 365 ~GeV~v~nl~~~~~~~rf~D~G~v-----~gts~~~S~ng~ylA~GS~~G-iVNIYd~~s~~~s~~PkPik~~dNLtt~I 438 (514)
T KOG2055|consen 365 TGEVYVWNLRQNSCLHRFVDDGSV-----HGTSLCISLNGSYLATGSDSG-IVNIYDGNSCFASTNPKPIKTVDNLTTAI 438 (514)
T ss_pred CceEEEEecCCcceEEEEeecCcc-----ceeeeeecCCCceEEeccCcc-eEEEeccchhhccCCCCchhhhhhhheee
Confidence 999999999999888655433111 235677789999999999887 999999653 45565555 46789
Q ss_pred EEEEEeCC--EEEEEE--cCCeEEEEECCCCcEEEEeccc--CCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1027 RAMVVSSE--LVYLGC--KGGTVEIWDQKRQIRIETLQTG--TSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1027 ~~l~~spd--~l~sgs--~dg~I~vwd~~t~~~~~~l~~~--h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
+++.|++| .++.+| .++.+++-.+.+......+... .-+.|+|++|||.|.+|+.|..+|.|.+|.+.
T Consensus 439 tsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 439 TSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 99999999 555555 5789999999988777766432 23479999999999999999999999999873
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.3e-19 Score=182.74 Aligned_cols=255 Identities=17% Similarity=0.252 Sum_probs=184.2
Q ss_pred ecccCCCcEEEEEEeC--CEEEEEECCCeEEEEecC--CCcceeEEEecccCCCeEEEEEec--CCCEEEEEeCCCcEEE
Q 001349 808 VDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGR--GSILHLIQQIREHTKAVTGLAILQ--SGEMLYSGSLDKTARV 881 (1094)
Q Consensus 808 ~~~~h~~~V~~l~fsp--d~LaSgs~Dg~I~vWd~~--t~~~~~~~~l~~H~~~V~sv~fsp--dg~~LaSgs~DgtI~v 881 (1094)
...+|.+-|+++.|.. ..+|||+.|++|+|||.. ++.+.+...++.|.+.|+.|.|.+ -|+.+|++|.|++++|
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 4568899999999976 599999999999999954 566788889999999999999976 5999999999999999
Q ss_pred EECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCC----EEEEEEcCCeE
Q 001349 882 WSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQG----KVYCGCQDGAI 957 (1094)
Q Consensus 882 Wdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~----~l~sgs~Dg~I 957 (1094)
|.-...... ..|+ .|.....+.+....|..+.|.|. ++++++.||.+
T Consensus 88 WEE~~~~~~------------------------~~~~-----~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~l 138 (361)
T KOG2445|consen 88 WEEQEKSEE------------------------AHGR-----RWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGIL 138 (361)
T ss_pred eeecccccc------------------------cccc-----eeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEE
Confidence 975321100 0000 00011122233444555555542 48999999999
Q ss_pred EEEECCCCceeEEeccce-------eecCCCCCeEEEEEeCC---ccEEEEEECCC----CEEEEEECCCCe----EEEE
Q 001349 958 QEIDLATGTFATIQTGHR-------KLLGKANPVHALQVHNG---LVYTASTSLDG----AAVKMWSTSNYN----MVGS 1019 (1094)
Q Consensus 958 ~iwDl~~~~~~~~~~~~~-------~~~~h~~~V~sl~fs~~---~~~las~s~Dg----~~I~iwd~~~~~----~~~~ 1019 (1094)
+||+.-....+...+-.. ....+..+..|+.|++. ..+++.++.++ +.++||....+. .+.+
T Consensus 139 RIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~ 218 (361)
T KOG2445|consen 139 RIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAE 218 (361)
T ss_pred EEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehh
Confidence 999876543332111111 12245677889999864 45677776541 378888775432 3334
Q ss_pred ec-CCCCEEEEEEeCC------EEEEEEcCCeEEEEECCCC--------------------cEEEEecccCCcceEEEEE
Q 001349 1020 LP-TLSEVRAMVVSSE------LVYLGCKGGTVEIWDQKRQ--------------------IRIETLQTGTSGKVQCMAL 1072 (1094)
Q Consensus 1020 ~~-~~~~v~~l~~spd------~l~sgs~dg~I~vwd~~t~--------------------~~~~~l~~~h~~~I~~l~~ 1072 (1094)
+. +..+|+.++|.|+ .+++++.|| |+||++... +.+..+ .+|.+.|+.+.|
T Consensus 219 L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~-~~H~~~VWrv~w 296 (361)
T KOG2445|consen 219 LPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSEL-DDHNGEVWRVRW 296 (361)
T ss_pred cCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeec-cCCCCceEEEEE
Confidence 44 7899999999998 599999999 999998731 133445 689999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeC
Q 001349 1073 DDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1073 Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
+-.|..|.+.|.||.|++|.-
T Consensus 297 NmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 297 NMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred eeeeeEEeecCCCceeeehhh
Confidence 999999999999999999964
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-20 Score=189.53 Aligned_cols=240 Identities=20% Similarity=0.279 Sum_probs=206.7
Q ss_pred eecccCCCcEEEEEEeC---C--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 001349 807 HVDSSENGKVLSIACFR---D--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 881 (1094)
Q Consensus 807 ~~~~~h~~~V~~l~fsp---d--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~v 881 (1094)
.+..+|+.+|..++||| + +|++++.||.-.+-+-+|| .-+.+|.+|.+.||+...+.+...-++++.|-+-+|
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg--dwigtfeghkgavw~~~l~~na~~aasaaadftakv 85 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG--DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKV 85 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC--CcEEeeeccCcceeeeecCchhhhhhhhcccchhhh
Confidence 45679999999999997 3 8999999999999999999 679999999999999999999889999999999999
Q ss_pred EECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEE
Q 001349 882 WSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEID 961 (1094)
Q Consensus 882 Wdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwD 961 (1094)
||.-+|. .+..+.|+.-|..++ |+.|.+ .|++|+.+..+++||
T Consensus 86 w~a~tgd--elhsf~hkhivk~~a-------f~~ds~----------------------------~lltgg~ekllrvfd 128 (334)
T KOG0278|consen 86 WDAVTGD--ELHSFEHKHIVKAVA-------FSQDSN----------------------------YLLTGGQEKLLRVFD 128 (334)
T ss_pred hhhhhhh--hhhhhhhhheeeeEE-------ecccch----------------------------hhhccchHHHhhhhh
Confidence 9998874 334445555666666 666655 488999999999999
Q ss_pred CCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC-EEEEEE
Q 001349 962 LATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE-LVYLGC 1040 (1094)
Q Consensus 962 l~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd-~l~sgs 1040 (1094)
+...+-.. ..+.+|.+.|..+.|......+.+.+.| ++||+||.+++..++++....+|+++.++++ .+++-.
T Consensus 129 ln~p~App-----~E~~ghtg~Ir~v~wc~eD~~iLSSadd-~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia 202 (334)
T KOG0278|consen 129 LNRPKAPP-----KEISGHTGGIRTVLWCHEDKCILSSADD-KTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA 202 (334)
T ss_pred ccCCCCCc-----hhhcCCCCcceeEEEeccCceEEeeccC-CceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe
Confidence 98765432 5678999999999998766666776555 5999999999999999999999999999999 677888
Q ss_pred cCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1041 KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1041 ~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
..+.|.+||..+..+++.++ -...|.+...+|+..++++|+.|+.++.||.
T Consensus 203 ~gssV~Fwdaksf~~lKs~k--~P~nV~SASL~P~k~~fVaGged~~~~kfDy 253 (334)
T KOG0278|consen 203 YGSSVKFWDAKSFGLLKSYK--MPCNVESASLHPKKEFFVAGGEDFKVYKFDY 253 (334)
T ss_pred cCceeEEeccccccceeecc--CccccccccccCCCceEEecCcceEEEEEec
Confidence 88999999999999998885 4457999999999999999999999999986
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-18 Score=180.75 Aligned_cols=239 Identities=15% Similarity=0.224 Sum_probs=191.8
Q ss_pred ecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeC--CCcEEEEE
Q 001349 808 VDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSL--DKTARVWS 883 (1094)
Q Consensus 808 ~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~--DgtI~vWd 883 (1094)
.+....+.|.++.|+++ ++++++.|.++++||..++ +.++++..+.-.|..+.|....+.++.++. |.+||.-+
T Consensus 9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g--~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs 86 (311)
T KOG1446|consen 9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG--KQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS 86 (311)
T ss_pred ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCC--ceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence 44446789999999986 8999999999999999999 889999888889999999887777777776 88999999
Q ss_pred CCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECC
Q 001349 884 IGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA 963 (1094)
Q Consensus 884 i~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~ 963 (1094)
+.+++ .......|...|.++. .+|-+. .+++++.|++|++||++
T Consensus 87 l~dNk-ylRYF~GH~~~V~sL~-------~sP~~d----------------------------~FlS~S~D~tvrLWDlR 130 (311)
T KOG1446|consen 87 LHDNK-YLRYFPGHKKRVNSLS-------VSPKDD----------------------------TFLSSSLDKTVRLWDLR 130 (311)
T ss_pred eecCc-eEEEcCCCCceEEEEE-------ecCCCC----------------------------eEEecccCCeEEeeEec
Confidence 98874 2223335667777766 444443 58899999999999999
Q ss_pred CCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCC--eEEEEec----CCCCEEEEEEeCC--E
Q 001349 964 TGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY--NMVGSLP----TLSEVRAMVVSSE--L 1035 (1094)
Q Consensus 964 ~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~--~~~~~~~----~~~~v~~l~~spd--~ 1035 (1094)
..++...+. ...-...+|+|.|.++|.+...+ .|++||++.. .+..++. .....+.+.|||| +
T Consensus 131 ~~~cqg~l~--------~~~~pi~AfDp~GLifA~~~~~~-~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~ 201 (311)
T KOG1446|consen 131 VKKCQGLLN--------LSGRPIAAFDPEGLIFALANGSE-LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKS 201 (311)
T ss_pred CCCCceEEe--------cCCCcceeECCCCcEEEEecCCC-eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCE
Confidence 877764322 12334678999999999998765 9999999864 3555554 2567899999999 7
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEecccCCcc---eEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1036 VYLGCKGGTVEIWDQKRQIRIETLQTGTSGK---VQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1036 l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~---I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
++.++..+.+++.|.-+|....++. ++... --+.+|+||++++++|+.||+|.+|++.
T Consensus 202 iLlsT~~s~~~~lDAf~G~~~~tfs-~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 202 ILLSTNASFIYLLDAFDGTVKSTFS-GYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLE 262 (311)
T ss_pred EEEEeCCCcEEEEEccCCcEeeeEe-eccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcC
Confidence 8899999999999999999988883 55432 2577899999999999999999999873
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=204.12 Aligned_cols=301 Identities=14% Similarity=0.143 Sum_probs=200.7
Q ss_pred CcEEEEeeCCCCeEEEeCCcc--------eeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEeccc
Q 001349 785 MVKVLSNGHDSSADFWNHREL--------VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREH 854 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~~~--------~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H 854 (1094)
-..|+.+..||.|.++|.... ......|.+.|..+.|-|. .|++++.|.++++||+++++..-...+.||
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH 143 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGH 143 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccc
Confidence 347889999999999998732 2345679999999999995 999999999999999999843333348999
Q ss_pred CCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEc
Q 001349 855 TKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN 933 (1094)
Q Consensus 855 ~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~ 933 (1094)
++.|.+++|.| |...|++|+.||.|.|||++-.....+... ...++...-... .-..|-.+. ...+...--.
T Consensus 144 ~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~--~~~~~~~~n~~p-tpskp~~kr----~~k~kA~s~t 216 (720)
T KOG0321|consen 144 TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEF--DNRIYGRHNTAP-TPSKPLKKR----IRKWKAASNT 216 (720)
T ss_pred ccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHH--hhhhhccccCCC-CCCchhhcc----ccccccccCc
Confidence 99999999999 567899999999999999976431111100 000110000000 000000000 0000000001
Q ss_pred CCCCceEEEEeC-CEEEEEEc-CCeEEEEECCCCceeEEeccce--eecCC---CCCeEEEEEeCCccEEEEEECCCCEE
Q 001349 934 SSKYPKCLALVQ-GKVYCGCQ-DGAIQEIDLATGTFATIQTGHR--KLLGK---ANPVHALQVHNGLVYTASTSLDGAAV 1006 (1094)
Q Consensus 934 ~~~~v~~l~~s~-~~l~sgs~-Dg~I~iwDl~~~~~~~~~~~~~--~~~~h---~~~V~sl~fs~~~~~las~s~Dg~~I 1006 (1094)
....|+.+.|.+ ..|++++. |+.|++||++............ .+..| .-.+.++..+..|.++.....|+ .|
T Consensus 217 i~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~-sI 295 (720)
T KOG0321|consen 217 IFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN-SI 295 (720)
T ss_pred eeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC-cE
Confidence 123466777765 55888777 9999999999876554332211 22223 23466777776666666666686 99
Q ss_pred EEEECCCCe--EEEEecCC---CCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCC-CE
Q 001349 1007 KMWSTSNYN--MVGSLPTL---SEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNE-EF 1078 (1094)
Q Consensus 1007 ~iwd~~~~~--~~~~~~~~---~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg-~~ 1078 (1094)
..||+.+.. ++..+.+. .....-..+|| ++++|+.|...++|.+.+.+.--.+..||.-.|++++|.|.. .-
T Consensus 296 y~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~ 375 (720)
T KOG0321|consen 296 YFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTP 375 (720)
T ss_pred EEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCC
Confidence 999998643 33444332 11222234555 999999999999999998776555557999999999998743 34
Q ss_pred EEEEeCCCcEEEEeC
Q 001349 1079 LVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1079 L~sgs~DG~I~iWdl 1093 (1094)
++|+++|.+++||++
T Consensus 376 v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 376 VATCSDDFRVKIWRL 390 (720)
T ss_pred ceeeccCcceEEEec
Confidence 677799999999997
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-18 Score=196.03 Aligned_cols=307 Identities=15% Similarity=0.191 Sum_probs=221.6
Q ss_pred cccccCcEEEEeeCCCCeEEEeCCccee---ecccC-----------------------CCcEEEEEEeC--CEEEEEEC
Q 001349 780 PLAFEMVKVLSNGHDSSADFWNHRELVH---VDSSE-----------------------NGKVLSIACFR--DKIFSGHS 831 (1094)
Q Consensus 780 ~~~~d~~~l~s~s~dg~I~vWd~~~~~~---~~~~h-----------------------~~~V~~l~fsp--d~LaSgs~ 831 (1094)
.+....++|++|+.+|+|++|+..+... ....| --...++.|.+ +.+.....
T Consensus 265 CIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYn 344 (1080)
T KOG1408|consen 265 CICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYN 344 (1080)
T ss_pred eeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEc
Confidence 3445678999999999999998752111 00111 11234667886 38889999
Q ss_pred CCeEEEEecCCCc-ceeEEEecccCCCeEEEEEecC-----------CCEEEEEeCCCcEEEEECCCCceEEE---Eec-
Q 001349 832 DGTIKVWTGRGSI-LHLIQQIREHTKAVTGLAILQS-----------GEMLYSGSLDKTARVWSIGNEEIHCV---QVH- 895 (1094)
Q Consensus 832 Dg~I~vWd~~t~~-~~~~~~l~~H~~~V~sv~fspd-----------g~~LaSgs~DgtI~vWdi~~~~~~~~---~~~- 895 (1094)
|..++|||++.-. ......+-.|...||+|.--|. ...++|+|.|+|||+||+..+....+ ...
T Consensus 345 dhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils 424 (1080)
T KOG1408|consen 345 DHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILS 424 (1080)
T ss_pred CceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccch
Confidence 9999999998631 1233445579999999877651 13689999999999999987431100 000
Q ss_pred -----------------ccCcccee--------eeecCceEEEeeCCCeEEEEEeCCeEEEEc------------CCCCc
Q 001349 896 -----------------DIKDQIQN--------LAVSNSILCFIPQGAGIKVHLRNGKTKLLN------------SSKYP 938 (1094)
Q Consensus 896 -----------------~~~~~V~~--------v~~~~~~~~fspdg~~l~~~~~~g~i~l~~------------~~~~v 938 (1094)
....++.. -.+.-..++++|+|++++.+..-|++++++ |...|
T Consensus 425 ~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEi 504 (1080)
T KOG1408|consen 425 ANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEI 504 (1080)
T ss_pred hhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheeccccee
Confidence 00000000 001111456999999999999999999987 45789
Q ss_pred eEEEEeC-----CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCc--cEEEEEECCCCEEEEEEC
Q 001349 939 KCLALVQ-----GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL--VYTASTSLDGAAVKMWST 1011 (1094)
Q Consensus 939 ~~l~~s~-----~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~--~~las~s~Dg~~I~iwd~ 1011 (1094)
.|+.|+. ..|++++.|.-|++||+...-.+. .++.+|...|+++.|-.++ ..+++++.|. .| .|+.
T Consensus 505 lcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~-----qtld~HSssITsvKFa~~gln~~MiscGADk-si-mFr~ 577 (1080)
T KOG1408|consen 505 LCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLV-----QTLDGHSSSITSVKFACNGLNRKMISCGADK-SI-MFRV 577 (1080)
T ss_pred EEEeecCchhhhHhhhhccCCceEEEEecccccchh-----hhhcccccceeEEEEeecCCceEEEeccCch-hh-heeh
Confidence 9999984 348999999999999987654332 6788999999999997554 6778888773 33 4444
Q ss_pred CC----CeEEEEec---CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecc--cCCcceEEEEEcCCCCEEE
Q 001349 1012 SN----YNMVGSLP---TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQT--GTSGKVQCMALDDNEEFLV 1080 (1094)
Q Consensus 1012 ~~----~~~~~~~~---~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~--~h~~~I~~l~~Spdg~~L~ 1080 (1094)
.. |.....-. .+..+..|++.|. ++++++.|..|+|||+.+|+..+.|+. +|.+....+...|.|-||+
T Consensus 578 ~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~a 657 (1080)
T KOG1408|consen 578 NQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLA 657 (1080)
T ss_pred hccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEE
Confidence 32 22211111 2466889999998 899999999999999999999999964 4556788899999999999
Q ss_pred EEeCCCcEEEEeC
Q 001349 1081 IGTSDGRIQAWGL 1093 (1094)
Q Consensus 1081 sgs~DG~I~iWdl 1093 (1094)
+...|.++.++|+
T Consensus 658 tScsdktl~~~Df 670 (1080)
T KOG1408|consen 658 TSCSDKTLCFVDF 670 (1080)
T ss_pred EeecCCceEEEEe
Confidence 9999999999996
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-17 Score=182.50 Aligned_cols=299 Identities=15% Similarity=0.231 Sum_probs=223.0
Q ss_pred ccccc-cCcEEEEeeCCCCeEEEeCCc-----ceeecccC-CCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEE
Q 001349 779 SPLAF-EMVKVLSNGHDSSADFWNHRE-----LVHVDSSE-NGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQ 850 (1094)
Q Consensus 779 ~~~~~-d~~~l~s~s~dg~I~vWd~~~-----~~~~~~~h-~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~ 850 (1094)
..|.| +.+.+++++ .|.+..|+... ..-++..+ ...|.|++|.++ -++||.++|.|.||+..+. +..+.
T Consensus 206 a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~--~~~k~ 282 (626)
T KOG2106|consen 206 ATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTN--RISKQ 282 (626)
T ss_pred EEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCc--eEEeE
Confidence 33444 555666655 57889998872 12223333 478999999997 9999999999999999877 56666
Q ss_pred ecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCC--e
Q 001349 851 IREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNG--K 928 (1094)
Q Consensus 851 l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g--~ 928 (1094)
...|.+.|.+++...+|.+| ||+.|..|..||-+-.+.+.....+..+++..++-....+.+-...+.+.-++..+ +
T Consensus 283 ~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~ 361 (626)
T KOG2106|consen 283 VHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFT 361 (626)
T ss_pred eeecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCce
Confidence 66999999999999999755 59999999999955444555556666677777764433333333333343333332 3
Q ss_pred EEEEcCCCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEE
Q 001349 929 TKLLNSSKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAV 1006 (1094)
Q Consensus 929 i~l~~~~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I 1006 (1094)
+.+..|......++.++ +.+++++.|+++++|+ ..+.... +. ...++.++.|+|.+ .++.|...| ..
T Consensus 362 ~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt----~~---~~d~~~~~~fhpsg-~va~Gt~~G-~w 430 (626)
T KOG2106|consen 362 LTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWT----KI---IEDPAECADFHPSG-VVAVGTATG-RW 430 (626)
T ss_pred EEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEE----EE---ecCceeEeeccCcc-eEEEeeccc-eE
Confidence 34566777888888876 5699999999999999 3343322 11 23688999999999 778888887 88
Q ss_pred EEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCc-EEEEecccCCcceEEEEEcCCCCEEEEEe
Q 001349 1007 KMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI-RIETLQTGTSGKVQCMALDDNEEFLVIGT 1083 (1094)
Q Consensus 1007 ~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~-~~~~l~~~h~~~I~~l~~Spdg~~L~sgs 1083 (1094)
.+.|..+...+..-..+.+++.+.|+|+ +++.|+.|+.|+||-+.... ........|..+|+.+.||+|+++|.+-+
T Consensus 431 ~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S 510 (626)
T KOG2106|consen 431 FVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNS 510 (626)
T ss_pred EEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEecc
Confidence 9999998777666667889999999998 89999999999999987543 33333233457999999999999999999
Q ss_pred CCCcEEEEe
Q 001349 1084 SDGRIQAWG 1092 (1094)
Q Consensus 1084 ~DG~I~iWd 1092 (1094)
-|-.|..|.
T Consensus 511 ~d~eiLyW~ 519 (626)
T KOG2106|consen 511 GDYEILYWK 519 (626)
T ss_pred CceEEEEEc
Confidence 999999994
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-19 Score=195.95 Aligned_cols=232 Identities=14% Similarity=0.148 Sum_probs=182.2
Q ss_pred cccccCcEEEEeeCCCCeEEEeCCc------------ceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCc
Q 001349 780 PLAFEMVKVLSNGHDSSADFWNHRE------------LVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSI 844 (1094)
Q Consensus 780 ~~~~d~~~l~s~s~dg~I~vWd~~~------------~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~ 844 (1094)
.+..++..+++++..+.|.|||+.+ ....+.+|.+.-++++|++. .+++|+.|++|++||+....
T Consensus 132 ymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~ 211 (422)
T KOG0264|consen 132 YMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAES 211 (422)
T ss_pred hCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccc
Confidence 3444677899999999999999861 12267899998889999985 99999999999999997532
Q ss_pred -----ceeEEEecccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCc-eEEEEecccCccceeeeecCceEEEeeCC
Q 001349 845 -----LHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEE-IHCVQVHDIKDQIQNLAVSNSILCFIPQG 917 (1094)
Q Consensus 845 -----~~~~~~l~~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~-~~~~~~~~~~~~V~~v~~~~~~~~fspdg 917 (1094)
......+.+|++.|..++|++ +...++++++|+.+.|||+++++ ........|..+|.+++ |+|-+
T Consensus 212 ~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~-------fnp~~ 284 (422)
T KOG0264|consen 212 KEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVA-------FNPFN 284 (422)
T ss_pred cCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEE-------eCCCC
Confidence 345677899999999999999 67799999999999999999632 12222334566666666 55554
Q ss_pred CeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC-ccEE
Q 001349 918 AGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG-LVYT 996 (1094)
Q Consensus 918 ~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~-~~~l 996 (1094)
.. .|++|+.|++|.+||+++-.... .++.+|...|..|.|+|+ ...+
T Consensus 285 ~~---------------------------ilAT~S~D~tV~LwDlRnL~~~l-----h~~e~H~dev~~V~WSPh~etvL 332 (422)
T KOG0264|consen 285 EF---------------------------ILATGSADKTVALWDLRNLNKPL-----HTFEGHEDEVFQVEWSPHNETVL 332 (422)
T ss_pred Cc---------------------------eEEeccCCCcEEEeechhcccCc-----eeccCCCcceEEEEeCCCCCcee
Confidence 43 48999999999999999866532 688999999999999986 4566
Q ss_pred EEEECCCCEEEEEECCCCeEE------------EEec---CCCCEEEEEEeCC---EEEEEEcCCeEEEEECC
Q 001349 997 ASTSLDGAAVKMWSTSNYNMV------------GSLP---TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQK 1051 (1094)
Q Consensus 997 as~s~Dg~~I~iwd~~~~~~~------------~~~~---~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~ 1051 (1094)
++++.|+ .+.+||+..-... --|. |...|..+.|+|+ .+++.++|+.+.||.+.
T Consensus 333 ASSg~D~-rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 333 ASSGTDR-RLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred EecccCC-cEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 7777775 9999999642211 1233 5677999999998 78999999999999976
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.3e-19 Score=181.36 Aligned_cols=266 Identities=15% Similarity=0.196 Sum_probs=204.3
Q ss_pred HHhhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcc
Q 001349 770 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSIL 845 (1094)
Q Consensus 770 ~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~ 845 (1094)
++|.+.....-+..+|..|++++.|.++.||-.. +.+-++.||++.|+|+..+.+ .++||+.|.++++||+.+|
T Consensus 7 ~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG-- 84 (327)
T KOG0643|consen 7 QGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG-- 84 (327)
T ss_pred ccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC--
Confidence 4566666677788899999999999999999763 677889999999999998765 9999999999999999999
Q ss_pred eeEEEecccCCCeEEEEEecCCCEEEEEeC-----CCcEEEEECCCCc------eEEEEecccCccceeeeecCceEEEe
Q 001349 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSL-----DKTARVWSIGNEE------IHCVQVHDIKDQIQNLAVSNSILCFI 914 (1094)
Q Consensus 846 ~~~~~l~~H~~~V~sv~fspdg~~LaSgs~-----DgtI~vWdi~~~~------~~~~~~~~~~~~V~~v~~~~~~~~fs 914 (1094)
+++.+++ -..+|..+.|+++|++++...+ .+.|.++|++... -.........+.+...- |.
T Consensus 85 k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~-------Wg 156 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSAL-------WG 156 (327)
T ss_pred cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeee-------ec
Confidence 7888875 5678999999999998887755 3679999998432 11222222334455444 99
Q ss_pred eCCCeEEEEEeCCeEEEEcC-------------CCCceEEEEeCC--EEEEEEcCCeEEEEECCCCceeEEeccceeecC
Q 001349 915 PQGAGIKVHLRNGKTKLLNS-------------SKYPKCLALVQG--KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLG 979 (1094)
Q Consensus 915 pdg~~l~~~~~~g~i~l~~~-------------~~~v~~l~~s~~--~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~ 979 (1094)
|-++.|+.+..+|.+..|+. ...|+.+.++++ .+++|+.|.+-++||..+-+.+.++..
T Consensus 157 ~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t------ 230 (327)
T KOG0643|consen 157 PLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT------ 230 (327)
T ss_pred ccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee------
Confidence 99999999999999999985 346788888764 499999999999999999888755442
Q ss_pred CCCCeEEEEEeCCccEEEEEE-CCCCEEEEEECCCCe------------EEEEec-CCCCEEEEEEeCC--EEEEEEcCC
Q 001349 980 KANPVHALQVHNGLVYTASTS-LDGAAVKMWSTSNYN------------MVGSLP-TLSEVRAMVVSSE--LVYLGCKGG 1043 (1094)
Q Consensus 980 h~~~V~sl~fs~~~~~las~s-~Dg~~I~iwd~~~~~------------~~~~~~-~~~~v~~l~~spd--~l~sgs~dg 1043 (1094)
..||++.+++|....++.++ .+.+-|.-=+.+.|+ .+..++ |-++|++++|+|+ ..++|++||
T Consensus 231 -e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG 309 (327)
T KOG0643|consen 231 -ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDG 309 (327)
T ss_pred -cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCc
Confidence 36899999999766666653 222223222333332 223334 6689999999999 688999999
Q ss_pred eEEEEECCC
Q 001349 1044 TVEIWDQKR 1052 (1094)
Q Consensus 1044 ~I~vwd~~t 1052 (1094)
.|++.....
T Consensus 310 ~VR~h~Fd~ 318 (327)
T KOG0643|consen 310 YVRLHHFDS 318 (327)
T ss_pred eEEEEEecc
Confidence 999986553
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.3e-19 Score=209.61 Aligned_cols=254 Identities=19% Similarity=0.244 Sum_probs=198.6
Q ss_pred CCCcEEEEEEeCC--EEEEEE--CCCeEEEEecCCC----------cceeEEEecccCCCeEEEEEecCCCEEEEEeCCC
Q 001349 812 ENGKVLSIACFRD--KIFSGH--SDGTIKVWTGRGS----------ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDK 877 (1094)
Q Consensus 812 h~~~V~~l~fspd--~LaSgs--~Dg~I~vWd~~t~----------~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~Dg 877 (1094)
++..|.++..+|| .++||+ .||.++||+...- -.+.+.+...|.+.|+|+.|+|||++||+||+|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 3467899999998 999999 9999999976421 1245667788999999999999999999999999
Q ss_pred cEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC--CEEEEEEcCC
Q 001349 878 TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ--GKVYCGCQDG 955 (1094)
Q Consensus 878 tI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~--~~l~sgs~Dg 955 (1094)
.|.||...... ... .|...|...-+-.|.-...+..|...|..+.|++ ..+++++.|+
T Consensus 92 ~v~iW~~~~~~---------~~~-----------~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~Dn 151 (942)
T KOG0973|consen 92 LVMIWERAEIG---------SGT-----------VFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDN 151 (942)
T ss_pred eEEEeeecccC---------Ccc-----------cccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccc
Confidence 99999987410 000 0222222222223333334445677777777774 3589999999
Q ss_pred eEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecC-------CCCEEE
Q 001349 956 AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT-------LSEVRA 1028 (1094)
Q Consensus 956 ~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~-------~~~v~~ 1028 (1094)
+|.+||.++.+.+ ..+.+|...|..+.|+|-|.|+++-+.| ++|++|++.+....+.+.. ...+..
T Consensus 152 sViiwn~~tF~~~------~vl~~H~s~VKGvs~DP~Gky~ASqsdD-rtikvwrt~dw~i~k~It~pf~~~~~~T~f~R 224 (942)
T KOG0973|consen 152 SVIIWNAKTFELL------KVLRGHQSLVKGVSWDPIGKYFASQSDD-RTLKVWRTSDWGIEKSITKPFEESPLTTFFLR 224 (942)
T ss_pred eEEEEccccceee------eeeecccccccceEECCccCeeeeecCC-ceEEEEEcccceeeEeeccchhhCCCcceeee
Confidence 9999999998666 6788999999999999999999999877 5999999988887777762 355889
Q ss_pred EEEeCC--EEEEEE----cCCeEEEEECCCCcEEEEecccCCcceEEEEEcCC-----CC------------EEEEEeCC
Q 001349 1029 MVVSSE--LVYLGC----KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDN-----EE------------FLVIGTSD 1085 (1094)
Q Consensus 1029 l~~spd--~l~sgs----~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spd-----g~------------~L~sgs~D 1085 (1094)
+.|||| +|+++- ...++.|.+..+.+.-..| .||.+++.++.|+|. .+ .+++|+.|
T Consensus 225 lSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~L-vGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqD 303 (942)
T KOG0973|consen 225 LSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDL-VGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQD 303 (942)
T ss_pred cccCCCcCeecchhhccCCcceeEEEecCCceeeeee-ecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCC
Confidence 999999 666642 3457999999888888888 699999999999981 11 67899999
Q ss_pred CcEEEEeC
Q 001349 1086 GRIQAWGL 1093 (1094)
Q Consensus 1086 G~I~iWdl 1093 (1094)
++|.||..
T Consensus 304 rSlSVW~T 311 (942)
T KOG0973|consen 304 RSLSVWNT 311 (942)
T ss_pred ccEEEEec
Confidence 99999974
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.5e-19 Score=203.11 Aligned_cols=237 Identities=20% Similarity=0.275 Sum_probs=190.3
Q ss_pred hccccccccccCcEEEEeeCCCCeEEEeCC--cceeeccc-CCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEE
Q 001349 774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSS-ENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQ 850 (1094)
Q Consensus 774 ~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~-h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~ 850 (1094)
..+....+..+|.+|+.|..+|.|.|||.. .....+.+ |.+.|.+++|....+.+|+.||.|..+|+.... ....+
T Consensus 218 ~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~-~~~~~ 296 (484)
T KOG0305|consen 218 ELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQ-HVVST 296 (484)
T ss_pred CceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecch-hhhhh
Confidence 344556677899999999999999999987 34455566 999999999999999999999999999999873 22335
Q ss_pred ecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEE
Q 001349 851 IREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK 930 (1094)
Q Consensus 851 l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~ 930 (1094)
+.+|...|..+.|++|+.++|+|+.|+.+.|||..... ..+....|...|..++ |+|-..
T Consensus 297 ~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~-p~~~~~~H~aAVKA~a-------wcP~q~------------ 356 (484)
T KOG0305|consen 297 LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE-PKFTFTEHTAAVKALA-------WCPWQS------------ 356 (484)
T ss_pred hhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc-ccEEEeccceeeeEee-------eCCCcc------------
Confidence 88999999999999999999999999999999995532 3444455667777776 444333
Q ss_pred EEcCCCCceEEEEeCCEEEE--EEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEE-ECCCCEEE
Q 001349 931 LLNSSKYPKCLALVQGKVYC--GCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAST-SLDGAAVK 1007 (1094)
Q Consensus 931 l~~~~~~v~~l~~s~~~l~s--gs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~-s~Dg~~I~ 1007 (1094)
+.|++ |+.|++|++||..+|..+... .-...|.++.|++...-++++ +.....|.
T Consensus 357 ---------------~lLAsGGGs~D~~i~fwn~~~g~~i~~v-------dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~ 414 (484)
T KOG0305|consen 357 ---------------GLLATGGGSADRCIKFWNTNTGARIDSV-------DTGSQVCSLIWSKKYKELLSTHGYSENQIT 414 (484)
T ss_pred ---------------CceEEcCCCcccEEEEEEcCCCcEeccc-------ccCCceeeEEEcCCCCEEEEecCCCCCcEE
Confidence 33555 467999999999999887322 234689999999877444443 32234899
Q ss_pred EEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCC
Q 001349 1008 MWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQ 1053 (1094)
Q Consensus 1008 iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~ 1053 (1094)
||+..+.+.+..+. |...|..++++|| .+++|+.|.++++|++-..
T Consensus 415 lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 415 LWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 99999988888888 7889999999999 8999999999999998664
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-19 Score=193.37 Aligned_cols=225 Identities=18% Similarity=0.255 Sum_probs=172.1
Q ss_pred CcEEEEeeCCCCeEEEeCC------cce-----------------eecccCCCcEEEEEEeCC---EEEEEECCCeEEEE
Q 001349 785 MVKVLSNGHDSSADFWNHR------ELV-----------------HVDSSENGKVLSIACFRD---KIFSGHSDGTIKVW 838 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~------~~~-----------------~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vW 838 (1094)
|+++|.|..|..|.|||+. .+. ....+|++.|.+++|+.+ .|||||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 8899999999999999975 111 112469999999999974 99999999999999
Q ss_pred ecCCCcceeEEEecccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCC
Q 001349 839 TGRGSILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQG 917 (1094)
Q Consensus 839 d~~t~~~~~~~~l~~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg 917 (1094)
|+.++ ++..++..|++.|.++.|+| .+.+|++||.|++|.+.|.+... ..-.. |.-
T Consensus 272 D~~~g--~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~-~s~~~------------------wk~-- 328 (463)
T KOG0270|consen 272 DVDTG--KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS-NSGKE------------------WKF-- 328 (463)
T ss_pred EcCCC--CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcc-ccCce------------------EEe--
Confidence 99999 78888989999999999999 68899999999999999998521 00000 111
Q ss_pred CeEEEEEeCCeEEEEcCCCCceEEEEe---CCEEEEEEcCCeEEEEECCCC-ceeEEeccceeecCCCCCeEEEEEeCCc
Q 001349 918 AGIKVHLRNGKTKLLNSSKYPKCLALV---QGKVYCGCQDGAIQEIDLATG-TFATIQTGHRKLLGKANPVHALQVHNGL 993 (1094)
Q Consensus 918 ~~l~~~~~~g~i~l~~~~~~v~~l~~s---~~~l~sgs~Dg~I~iwDl~~~-~~~~~~~~~~~~~~h~~~V~sl~fs~~~ 993 (1094)
.+.|-.++|. +..+++++.||+|+.+|+|+. +++ .++..|..+|.+++++...
T Consensus 329 -----------------~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~v------wt~~AHd~~ISgl~~n~~~ 385 (463)
T KOG0270|consen 329 -----------------DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPV------WTLKAHDDEISGLSVNIQT 385 (463)
T ss_pred -----------------ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCce------eEEEeccCCcceEEecCCC
Confidence 2223333333 245889999999999999986 444 5778899999999998654
Q ss_pred -cEEEEEECCCCEEEEEECCCCeEEEEecC---CCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCcEE
Q 001349 994 -VYTASTSLDGAAVKMWSTSNYNMVGSLPT---LSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRI 1056 (1094)
Q Consensus 994 -~~las~s~Dg~~I~iwd~~~~~~~~~~~~---~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~~~ 1056 (1094)
.++++++.|+ .|++|++....+.....| -+...|+++.|+ .++.|+..+.++|||+.+...+
T Consensus 386 p~~l~t~s~d~-~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 386 PGLLSTASTDK-VVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred Ccceeeccccc-eEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 3566667775 999999975444322222 233667778887 6888898999999999876644
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.6e-19 Score=190.03 Aligned_cols=277 Identities=15% Similarity=0.166 Sum_probs=206.3
Q ss_pred eeecccCCCcEEEEEEeCC----EEEEEECCCeEEEEecCCC--cceeEEEecccCCCeEEEEEec-CCCEEEEEeCCCc
Q 001349 806 VHVDSSENGKVLSIACFRD----KIFSGHSDGTIKVWTGRGS--ILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKT 878 (1094)
Q Consensus 806 ~~~~~~h~~~V~~l~fspd----~LaSgs~Dg~I~vWd~~t~--~~~~~~~l~~H~~~V~sv~fsp-dg~~LaSgs~Dgt 878 (1094)
..+...|.+.|++++|+|. ++++|+.-|+|-+||+.+. ...-+..+..|..+|.++.|+| +...+++.|.||+
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 4556678999999999993 8999999999999999632 2245667788999999999999 6678999999999
Q ss_pred EEEEECCCCceEEEEecc-cCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC-------------CCCceEEEEe
Q 001349 879 ARVWSIGNEEIHCVQVHD-IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS-------------SKYPKCLALV 944 (1094)
Q Consensus 879 I~vWdi~~~~~~~~~~~~-~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~-------------~~~v~~l~~s 944 (1094)
|+.-|++++....+.... ....+.++. |+.+...+..+..-|...+|++ ...|++++++
T Consensus 259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d-------~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~N 331 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTDNIWFSSLD-------FSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALN 331 (498)
T ss_pred eeeeeecchhhHHHhhcCccceeeeecc-------ccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecC
Confidence 999999986532222221 122233333 6666666666655567777764 4578999998
Q ss_pred C---CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEEC----CCCeEE
Q 001349 945 Q---GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWST----SNYNMV 1017 (1094)
Q Consensus 945 ~---~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~----~~~~~~ 1017 (1094)
| -.+++++.|++.+|||++.-..... +......|...|.+..|+|.+-.+++.+.|+ .|+|||. ....+.
T Consensus 332 P~~p~~laT~s~D~T~kIWD~R~l~~K~s--p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~-~IRv~dss~~sa~~~p~ 408 (498)
T KOG4328|consen 332 PVCPWFLATASLDQTAKIWDLRQLRGKAS--PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDN-EIRVFDSSCISAKDEPL 408 (498)
T ss_pred CCCchheeecccCcceeeeehhhhcCCCC--cceecccccceeeeeEEcCCCCceEeeccCC-ceEEeecccccccCCcc
Confidence 6 4599999999999999986433211 1134467889999999999888899999996 9999998 344566
Q ss_pred EEecCCC----C--EEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEE-EEEcCCCC-EEEEEeCCCc
Q 001349 1018 GSLPTLS----E--VRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQC-MALDDNEE-FLVIGTSDGR 1087 (1094)
Q Consensus 1018 ~~~~~~~----~--v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~-l~~Spdg~-~L~sgs~DG~ 1087 (1094)
.++.|.. + .....|.|+ ++++|-.-..|-|+|-..++.+..+.......|.+ ..|+|-+. +++.++..|.
T Consensus 409 ~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gk 488 (498)
T KOG4328|consen 409 GTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGK 488 (498)
T ss_pred ceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccce
Confidence 6666532 2 335678898 78899888999999999999888874344435554 48999888 4455556789
Q ss_pred EEEEe
Q 001349 1088 IQAWG 1092 (1094)
Q Consensus 1088 I~iWd 1092 (1094)
|+||-
T Consensus 489 i~vft 493 (498)
T KOG4328|consen 489 IYVFT 493 (498)
T ss_pred EEEEe
Confidence 99984
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-19 Score=196.11 Aligned_cols=237 Identities=21% Similarity=0.294 Sum_probs=177.6
Q ss_pred eEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc--eEEEEec--ccCccceeeeecCceEEEeeCCCeEEE
Q 001349 847 LIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE--IHCVQVH--DIKDQIQNLAVSNSILCFIPQGAGIKV 922 (1094)
Q Consensus 847 ~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~--~~~~~~~--~~~~~V~~v~~~~~~~~fspdg~~l~~ 922 (1094)
.-..+++|+..|.++++.|.|..|+|||.|.+|++||+.... .+.+... .....|.++. |++.|..+++
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~-------ys~Tg~~iLv 231 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQ-------YSVTGDQILV 231 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceee-------ecCCCCeEEE
Confidence 345678899999999999999999999999999999998654 1111111 1234567776 8999999988
Q ss_pred EEeCCeEEEEcCC------------------------CCceEEEEeC---CEEEEEEcCCeEEEEECCCCceeEEeccce
Q 001349 923 HLRNGKTKLLNSS------------------------KYPKCLALVQ---GKVYCGCQDGAIQEIDLATGTFATIQTGHR 975 (1094)
Q Consensus 923 ~~~~g~i~l~~~~------------------------~~v~~l~~s~---~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~ 975 (1094)
.+.....++++.. ..++|..|+| +.+++++.||++++||+.+.+.....-.+.
T Consensus 232 vsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k 311 (641)
T KOG0772|consen 232 VSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK 311 (641)
T ss_pred EecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec
Confidence 8888777777632 2466777776 459999999999999998765432221123
Q ss_pred eecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCe--EEEEec--CC--CCEEEEEEeCC--EEEEEEcCCeEEE
Q 001349 976 KLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN--MVGSLP--TL--SEVRAMVVSSE--LVYLGCKGGTVEI 1047 (1094)
Q Consensus 976 ~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~--~~~~~~--~~--~~v~~l~~spd--~l~sgs~dg~I~v 1047 (1094)
...+..-++++.+|++++.++|++..|| .|.+|+..+.. +...+. |. ..|+++.||+| +|++-+.|+++++
T Consensus 312 ~~~g~Rv~~tsC~~nrdg~~iAagc~DG-SIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKv 390 (641)
T KOG0772|consen 312 PAGGKRVPVTSCAWNRDGKLIAAGCLDG-SIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKV 390 (641)
T ss_pred cCCCcccCceeeecCCCcchhhhcccCC-ceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceee
Confidence 3345556899999999999999999997 99999986532 222222 43 48999999998 8999999999999
Q ss_pred EECCCCc-EEEEecccC--CcceEEEEEcCCCCEEEEEeC------CCcEEEEe
Q 001349 1048 WDQKRQI-RIETLQTGT--SGKVQCMALDDNEEFLVIGTS------DGRIQAWG 1092 (1094)
Q Consensus 1048 wd~~t~~-~~~~l~~~h--~~~I~~l~~Spdg~~L~sgs~------DG~I~iWd 1092 (1094)
||++..+ ++... .+- .-.-+.++||||.++|+||++ .|++.+||
T Consensus 391 WDLrq~kkpL~~~-tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d 443 (641)
T KOG0772|consen 391 WDLRQFKKPLNVR-TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFD 443 (641)
T ss_pred eeccccccchhhh-cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEe
Confidence 9998754 44333 222 225678999999999999975 46777776
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.8e-18 Score=184.32 Aligned_cols=311 Identities=14% Similarity=0.195 Sum_probs=234.6
Q ss_pred HHHhhhccccccccccCcEEEEeeCCC--------CeEEEeCC--cceeecccCCCcEEEEEEeCC----EEEE--EECC
Q 001349 769 MKGLRELRKYSPLAFEMVKVLSNGHDS--------SADFWNHR--ELVHVDSSENGKVLSIACFRD----KIFS--GHSD 832 (1094)
Q Consensus 769 ~~~~~~~~~~~~~~~d~~~l~s~s~dg--------~I~vWd~~--~~~~~~~~h~~~V~~l~fspd----~LaS--gs~D 832 (1094)
+-+|..-+...++.||--++++|..-| .+++||.. +.++++-.....|.|++|++- ++.. -+.+
T Consensus 100 y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~ 179 (626)
T KOG2106|consen 100 YLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNP 179 (626)
T ss_pred ccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCc
Confidence 334555566778888888888876655 48999965 345556567788999999972 4433 3566
Q ss_pred CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceE-EEEec--ccCccceeeeecCc
Q 001349 833 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIH-CVQVH--DIKDQIQNLAVSNS 909 (1094)
Q Consensus 833 g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~-~~~~~--~~~~~V~~v~~~~~ 909 (1094)
..+.|||...+ ......+.-...|....|+|.+..++.....|.+.+|+.+++.+. ....+ ..+..|.++.
T Consensus 180 h~lSVWdWqk~--~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~---- 253 (626)
T KOG2106|consen 180 HMLSVWDWQKK--AKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVT---- 253 (626)
T ss_pred cccchhhchhh--hccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEE----
Confidence 78999999877 555666666788999999995544444445588999999988632 22222 2335677776
Q ss_pred eEEEeeCCCeEEEEEeCCeEEEEcC------------CCCceEEEEe-CCEEEEEEcCCeEEEEECCCCcee--------
Q 001349 910 ILCFIPQGAGIKVHLRNGKTKLLNS------------SKYPKCLALV-QGKVYCGCQDGAIQEIDLATGTFA-------- 968 (1094)
Q Consensus 910 ~~~fspdg~~l~~~~~~g~i~l~~~------------~~~v~~l~~s-~~~l~sgs~Dg~I~iwDl~~~~~~-------- 968 (1094)
|.++|. +++++.+|.+.+|+. .+.|.++..- +|.|++|+.|..|..||-.-.+..
T Consensus 254 ---F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~ 329 (626)
T KOG2106|consen 254 ---FLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQF 329 (626)
T ss_pred ---EcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhc
Confidence 888887 457778888888874 4567777665 578999999999999983211100
Q ss_pred ----EEecc----------------------ceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecC
Q 001349 969 ----TIQTG----------------------HRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT 1022 (1094)
Q Consensus 969 ----~~~~~----------------------~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~ 1022 (1094)
.+.++ .....+|......++.+|+...+++++.|+ .+++|+ ..++..+..-
T Consensus 330 G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk-~v~lW~--~~k~~wt~~~ 406 (626)
T KOG2106|consen 330 GPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDK-HVRLWN--DHKLEWTKII 406 (626)
T ss_pred CCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcc-eEEEcc--CCceeEEEEe
Confidence 00000 023467888899999999999999999996 999999 6777777778
Q ss_pred CCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1023 LSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1023 ~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
..+..++.|+|. .++.|+..|...|.|.++...+... .. ..+++.+.|+|+|.+|+.|+.|+.|+||.++
T Consensus 407 ~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~-~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 407 EDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIH-TD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVS 477 (626)
T ss_pred cCceeEeeccCcceEEEeeccceEEEEecccceeEEEE-ec-CCceEEEEEcCCCCEEEEecCCCeEEEEEEC
Confidence 889999999998 7999999999999999996666555 34 6799999999999999999999999999763
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-18 Score=180.48 Aligned_cols=251 Identities=16% Similarity=0.264 Sum_probs=198.4
Q ss_pred EEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEec------CCC-------------
Q 001349 787 KVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTG------RGS------------- 843 (1094)
Q Consensus 787 ~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~------~t~------------- 843 (1094)
.+.+++.|.+.+||.+. .++..+.||.+.|++|.|++. ++++++.|++-.||.. ...
T Consensus 162 i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e 241 (481)
T KOG0300|consen 162 ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEE 241 (481)
T ss_pred ceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhh
Confidence 78899999999999998 678889999999999999985 9999999999999962 110
Q ss_pred -------------------cceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceee
Q 001349 844 -------------------ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNL 904 (1094)
Q Consensus 844 -------------------~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v 904 (1094)
.-.++..+.+|.+.|.+..|-..|+.++++|.|.+..+||+++|++.. ....|....+.+
T Consensus 242 ~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~-~LtGHd~ELtHc 320 (481)
T KOG0300|consen 242 HSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVN-ILTGHDSELTHC 320 (481)
T ss_pred cccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceec-cccCcchhcccc
Confidence 013566788999999999999999999999999999999999996322 223345555555
Q ss_pred eecCceEEEeeCCCeEEEEEeCCeEEEEcCC-------------CCceEEEEe-CCEEEEEEcCCeEEEEECCCCceeEE
Q 001349 905 AVSNSILCFIPQGAGIKVHLRNGKTKLLNSS-------------KYPKCLALV-QGKVYCGCQDGAIQEIDLATGTFATI 970 (1094)
Q Consensus 905 ~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~-------------~~v~~l~~s-~~~l~sgs~Dg~I~iwDl~~~~~~~~ 970 (1094)
. -.|..+.+++.+.|.+.++|+.. ..|++..|. ++++++|+.|.+|++||+++.....
T Consensus 321 s-------tHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRspl- 392 (481)
T KOG0300|consen 321 S-------THPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPL- 392 (481)
T ss_pred c-------cCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcc-
Confidence 4 67888899999999999999853 456666665 5679999999999999999865432
Q ss_pred eccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec------CCCCEEEEEEeCC----EEEEEE
Q 001349 971 QTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP------TLSEVRAMVVSSE----LVYLGC 1040 (1094)
Q Consensus 971 ~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~------~~~~v~~l~~spd----~l~sgs 1040 (1094)
.+ .....+++.++++.++..++.- .|++.|++||+..... ..++ |...|+|++|..+ -+++++
T Consensus 393 ----AT-IRtdS~~NRvavs~g~~iIAiP-hDNRqvRlfDlnG~Rl-aRlPrtsRqgHrRMV~c~AW~eehp~cnLftcG 465 (481)
T KOG0300|consen 393 ----AT-IRTDSPANRVAVSKGHPIIAIP-HDNRQVRLFDLNGNRL-ARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCG 465 (481)
T ss_pred ----ee-eecCCccceeEeecCCceEEec-cCCceEEEEecCCCcc-ccCCcccccccceeeeeeeccccCccccccccc
Confidence 11 1234688999999888776654 5668999999975443 2222 5667999999877 588899
Q ss_pred cCCeEEEEECCCC
Q 001349 1041 KGGTVEIWDQKRQ 1053 (1094)
Q Consensus 1041 ~dg~I~vwd~~t~ 1053 (1094)
.|..+.=|++...
T Consensus 466 FDR~v~gW~in~p 478 (481)
T KOG0300|consen 466 FDRMVAGWKINTP 478 (481)
T ss_pred ccceeeeeEeccc
Confidence 9999999998754
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-19 Score=196.31 Aligned_cols=229 Identities=22% Similarity=0.315 Sum_probs=190.3
Q ss_pred ccccccccccCcEEEEeeCCCCeEEEeCCcc----eeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeE
Q 001349 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHREL----VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLI 848 (1094)
Q Consensus 775 ~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~----~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~ 848 (1094)
+++.+-+.+||+.+++||.-.++.|||+... ...+....-..++++.+|| ..++++.||.|.|||+.+. ..+
T Consensus 467 yiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq--~~V 544 (705)
T KOG0639|consen 467 YIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ--TLV 544 (705)
T ss_pred ceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc--eee
Confidence 5667889999999999999999999998732 2223333345678889997 8889999999999999998 899
Q ss_pred EEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCe
Q 001349 849 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 928 (1094)
Q Consensus 849 ~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~ 928 (1094)
+.|+||++.+.||.+++||..|.||+-|.+||-||++++ +....+++.+.|.++. ++|++.+++++..++
T Consensus 545 rqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlreg--rqlqqhdF~SQIfSLg-------~cP~~dWlavGMens- 614 (705)
T KOG0639|consen 545 RQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREG--RQLQQHDFSSQIFSLG-------YCPTGDWLAVGMENS- 614 (705)
T ss_pred ecccCCCCCceeEEecCCCceeecCCCccceeehhhhhh--hhhhhhhhhhhheecc-------cCCCccceeeecccC-
Confidence 999999999999999999999999999999999999997 5666677788888887 888888765555544
Q ss_pred EEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEE
Q 001349 929 TKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKM 1008 (1094)
Q Consensus 929 i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~i 1008 (1094)
.+.+........ ..+.-|...|.++.|.+-|.++++.+.|+ .+..
T Consensus 615 ---------------------------~vevlh~skp~k-------yqlhlheScVLSlKFa~cGkwfvStGkDn-lLna 659 (705)
T KOG0639|consen 615 ---------------------------NVEVLHTSKPEK-------YQLHLHESCVLSLKFAYCGKWFVSTGKDN-LLNA 659 (705)
T ss_pred ---------------------------cEEEEecCCccc-------eeecccccEEEEEEecccCceeeecCchh-hhhh
Confidence 444444332221 34456788999999999999999999996 9999
Q ss_pred EECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEEC
Q 001349 1009 WSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQ 1050 (1094)
Q Consensus 1009 wd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~ 1050 (1094)
|.+.-|..+...+..+.|.++.+|.| ++++|+.|..-.||.+
T Consensus 660 wrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 660 WRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 99999998888888899999999887 9999999988888864
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.1e-18 Score=178.31 Aligned_cols=230 Identities=15% Similarity=0.213 Sum_probs=171.5
Q ss_pred ccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001349 810 SSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNE 887 (1094)
Q Consensus 810 ~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~ 887 (1094)
......|+++.|+|. .|+.+++||++++||+... .....+ .|..++.+++|.+ ...+++|+.||.|+.+|++++
T Consensus 10 npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~--~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~ 85 (323)
T KOG1036|consen 10 NPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN--SLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG 85 (323)
T ss_pred CCChhceeeEEEcCcCCcEEEEeccCcEEEEeccch--hhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCC
Confidence 345788999999974 7777889999999999987 344444 5999999999986 567899999999999999997
Q ss_pred ceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEe--CCEEEEEEcCCeEEEEECCCC
Q 001349 888 EIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV--QGKVYCGCQDGAIQEIDLATG 965 (1094)
Q Consensus 888 ~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s--~~~l~sgs~Dg~I~iwDl~~~ 965 (1094)
+. .....|..++ +|+.+. .+.+++|+.|++|++||.++.
T Consensus 86 ~~--~~igth~~~i-------------------------------------~ci~~~~~~~~vIsgsWD~~ik~wD~R~~ 126 (323)
T KOG1036|consen 86 NE--DQIGTHDEGI-------------------------------------RCIEYSYEVGCVISGSWDKTIKFWDPRNK 126 (323)
T ss_pred cc--eeeccCCCce-------------------------------------EEEEeeccCCeEEEcccCccEEEEecccc
Confidence 42 2222334444 444444 357999999999999999974
Q ss_pred ceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec---CCCCEEEEEEeCC--EEEEEE
Q 001349 966 TFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---TLSEVRAMVVSSE--LVYLGC 1040 (1094)
Q Consensus 966 ~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~---~~~~v~~l~~spd--~l~sgs 1040 (1094)
.....+. ....|.++....+.. +.|..| +.|.+||+++........ -.-.+.++++-|+ .++++|
T Consensus 127 ~~~~~~d-------~~kkVy~~~v~g~~L--vVg~~~-r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sS 196 (323)
T KOG1036|consen 127 VVVGTFD-------QGKKVYCMDVSGNRL--VVGTSD-RKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSS 196 (323)
T ss_pred ccccccc-------cCceEEEEeccCCEE--EEeecC-ceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEe
Confidence 4432221 224788887765543 333344 699999999865443222 3456889999996 899999
Q ss_pred cCCeEEEEECCCC----cEEEEecccCCc---------ceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1041 KGGTVEIWDQKRQ----IRIETLQTGTSG---------KVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1041 ~dg~I~vwd~~t~----~~~~~l~~~h~~---------~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
-||.|.+=.++.. ..-..|+ .|.. +|++|+|+|-...|+||+.||.|.+||+
T Consensus 197 ieGRVavE~~d~s~~~~skkyaFk-CHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 197 IEGRVAVEYFDDSEEAQSKKYAFK-CHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDL 261 (323)
T ss_pred ecceEEEEccCCchHHhhhceeEE-eeecccCCceEEEEeceeEeccccceEEecCCCceEEEccC
Confidence 9999988776654 3334442 3432 7999999999999999999999999996
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-17 Score=190.07 Aligned_cols=273 Identities=21% Similarity=0.258 Sum_probs=213.8
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCCc---ceeecccC-CCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEec
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHRE---LVHVDSSE-NGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIR 852 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~~---~~~~~~~h-~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~ 852 (1094)
..+++.+.+.+|.+-.||.|.+|++.. ...++.+| +..|.+++|++. .|+|.+.+|+|.-||+.+. +....+.
T Consensus 30 slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~l--k~~~~~d 107 (691)
T KOG2048|consen 30 SLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTL--KQKYNID 107 (691)
T ss_pred EEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccC--ceeEEec
Confidence 445556778899999999999999982 33445554 578999999965 9999999999999999999 7888888
Q ss_pred ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecc-cCccceeeeecCceEEEeeCCCeEEEEEeCCeEEE
Q 001349 853 EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHD-IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL 931 (1094)
Q Consensus 853 ~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~-~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l 931 (1094)
...+.||+++.+|.+..++.|++||.+...++..+.+....... .++.+.++. |.|++.
T Consensus 108 ~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLsls-------w~~~~~------------- 167 (691)
T KOG2048|consen 108 SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLS-------WNPTGT------------- 167 (691)
T ss_pred CCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEE-------ecCCcc-------------
Confidence 88999999999999999999999998888888887644433332 235566655 555554
Q ss_pred EcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccc-eee-cCCCCCeEEEEEeCCccEEEEEECCCCEEEEE
Q 001349 932 LNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGH-RKL-LGKANPVHALQVHNGLVYTASTSLDGAAVKMW 1009 (1094)
Q Consensus 932 ~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~-~~~-~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iw 1009 (1094)
+++.|+.||.|++||..++......... ..+ .+...-|.++.|-.++. +++|...| +|++|
T Consensus 168 ---------------~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgDS~G-~V~FW 230 (691)
T KOG2048|consen 168 ---------------KIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGDSAG-TVTFW 230 (691)
T ss_pred ---------------EEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEEecCCc-eEEEE
Confidence 4899999999999999999877532210 011 11233477888876654 56776666 99999
Q ss_pred ECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcE---EEEecccCCcceEEEEEcCCCCEEEEEe
Q 001349 1010 STSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIR---IETLQTGTSGKVQCMALDDNEEFLVIGT 1083 (1094)
Q Consensus 1010 d~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~---~~~l~~~h~~~I~~l~~Spdg~~L~sgs 1083 (1094)
|...+.+++.+. |...|.+++..++ ++++++-|+.|.-|...+++. .......|...|.+++..++ .+++|+
T Consensus 231 d~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG 308 (691)
T KOG2048|consen 231 DSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGG 308 (691)
T ss_pred cccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecc
Confidence 999999999988 8899999999876 999999999999888776643 23333578889999999876 899999
Q ss_pred CCCcEEEE
Q 001349 1084 SDGRIQAW 1091 (1094)
Q Consensus 1084 ~DG~I~iW 1091 (1094)
.|+++.+-
T Consensus 309 ~d~~l~i~ 316 (691)
T KOG2048|consen 309 RDFTLAIC 316 (691)
T ss_pred eeeEEEEc
Confidence 99988763
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-17 Score=164.27 Aligned_cols=240 Identities=20% Similarity=0.267 Sum_probs=182.4
Q ss_pred CCCcEEEEEEeCC--EEEEEECCCeEEEEecC------CC----c---ceeEEEecccCCCeEEEEEecCCCEEEEEeCC
Q 001349 812 ENGKVLSIACFRD--KIFSGHSDGTIKVWTGR------GS----I---LHLIQQIREHTKAVTGLAILQSGEMLYSGSLD 876 (1094)
Q Consensus 812 h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~------t~----~---~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D 876 (1094)
....|.+++|+|. +.+.|+...+.+|-... .+ . ....+.-+.|.+.|.|.+|+|+|.+|++||.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 4568999999996 88999999999986432 11 0 11223345689999999999999999999999
Q ss_pred CcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC-----CE-EEE
Q 001349 877 KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ-----GK-VYC 950 (1094)
Q Consensus 877 gtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~-----~~-l~s 950 (1094)
++|++.-++...... .|..+ .+--|.+.|+.++|-+ +. +++
T Consensus 111 k~ik~l~fn~dt~~~------------------------~g~dl---------e~nmhdgtirdl~fld~~~s~~~il~s 157 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNA------------------------TGHDL---------EFNMHDGTIRDLAFLDDPESGGAILAS 157 (350)
T ss_pred ceEEEEecccccccc------------------------cCcce---------eeeecCCceeeeEEecCCCcCceEEEe
Confidence 999998776532100 00000 0111223344444432 22 333
Q ss_pred -EEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec---C----
Q 001349 951 -GCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---T---- 1022 (1094)
Q Consensus 951 -gs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~---~---- 1022 (1094)
|..|..|++-|..+|+.. ..+.||++-|.++ ++-++-.+++++.|. +|++||++-..++.++. |
T Consensus 158 ~gagdc~iy~tdc~~g~~~------~a~sghtghilal-yswn~~m~~sgsqdk-tirfwdlrv~~~v~~l~~~~~~~gl 229 (350)
T KOG0641|consen 158 AGAGDCKIYITDCGRGQGF------HALSGHTGHILAL-YSWNGAMFASGSQDK-TIRFWDLRVNSCVNTLDNDFHDGGL 229 (350)
T ss_pred cCCCcceEEEeecCCCCcc------eeecCCcccEEEE-EEecCcEEEccCCCc-eEEEEeeeccceeeeccCcccCCCc
Confidence 455777888888888876 5677888888776 355677889999985 99999999999988876 2
Q ss_pred -CCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1023 -LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1023 -~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
.+.|.++++.|. ++++|-.|....+||++.+..++.+ ..|...|.++.|||...++++++.|..|++-|+
T Consensus 230 essavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f-~phsadir~vrfsp~a~yllt~syd~~ikltdl 302 (350)
T KOG0641|consen 230 ESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRF-HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDL 302 (350)
T ss_pred ccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeee-CCCccceeEEEeCCCceEEEEecccceEEEeec
Confidence 256889999988 7899999999999999999999999 589999999999999999999999999999876
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.5e-18 Score=197.34 Aligned_cols=269 Identities=19% Similarity=0.229 Sum_probs=211.4
Q ss_pred ccccccCcEEEEeeCCCCeEEEeCCc---ceeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccC
Q 001349 779 SPLAFEMVKVLSNGHDSSADFWNHRE---LVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHT 855 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~dg~I~vWd~~~---~~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~ 855 (1094)
..+.++|..|++++.||.|++|+... .-....-|...|.+++...++|++|+.+++|.+|.+..+. .-..+...+
T Consensus 19 i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~--~~~iL~Rft 96 (933)
T KOG1274|consen 19 ICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGE--EDTILARFT 96 (933)
T ss_pred EEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCC--ccceeeeee
Confidence 45667899999999999999998752 1222333888999999999999999999999999999883 333444567
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC
Q 001349 856 KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS 935 (1094)
Q Consensus 856 ~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~ 935 (1094)
-++..++|+.+|++++.||+|-.|++-++.+.. .......|+.+|.++. |.|++..
T Consensus 97 lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s-~~~~lrgh~apVl~l~-------~~p~~~f---------------- 152 (933)
T KOG1274|consen 97 LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS-QEKVLRGHDAPVLQLS-------YDPKGNF---------------- 152 (933)
T ss_pred ccceEEEEecCCcEEEeecCceeEEEEeccccc-hheeecccCCceeeee-------EcCCCCE----------------
Confidence 789999999999999999999999999998864 3444456788888888 8888775
Q ss_pred CCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCC--CCCeEEEEEeCCccEEEEEECCCCEEEEEECCC
Q 001349 936 KYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGK--ANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN 1013 (1094)
Q Consensus 936 ~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h--~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~ 1013 (1094)
+++.+.||.|++||+.++.....+.+....... ...+..++|+|++..++..+.|+ .|++|+..+
T Consensus 153 ------------LAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~-~Vkvy~r~~ 219 (933)
T KOG1274|consen 153 ------------LAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN-TVKVYSRKG 219 (933)
T ss_pred ------------EEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCC-eEEEEccCC
Confidence 777888999999999988877555433222221 35677899999977777777786 999999999
Q ss_pred CeEEEEec---CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcE
Q 001349 1014 YNMVGSLP---TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRI 1088 (1094)
Q Consensus 1014 ~~~~~~~~---~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I 1088 (1094)
+.....+. +...+..+.|+|+ ||++++.||.|.|||+++-.. + .....|++++|.|+++.+-.-...|+.
T Consensus 220 we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~----~~~~~Vc~~aw~p~~n~it~~~~~g~~ 294 (933)
T KOG1274|consen 220 WELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-H----EFKRAVCCEAWKPNANAITLITALGTL 294 (933)
T ss_pred ceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-c----cccceeEEEecCCCCCeeEEEeecccc
Confidence 99888887 3455999999998 999999999999999998322 1 124579999999999877665555554
Q ss_pred EEE
Q 001349 1089 QAW 1091 (1094)
Q Consensus 1089 ~iW 1091 (1094)
.+|
T Consensus 295 ~~~ 297 (933)
T KOG1274|consen 295 GVS 297 (933)
T ss_pred ccC
Confidence 443
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-19 Score=206.40 Aligned_cols=235 Identities=14% Similarity=0.198 Sum_probs=186.6
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCCc-----ceeecccCCCcEEEEEEeC---CEEEEEECCCeEEEEecCCCcceeEE
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHRE-----LVHVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWTGRGSILHLIQ 849 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~~-----~~~~~~~h~~~V~~l~fsp---d~LaSgs~Dg~I~vWd~~t~~~~~~~ 849 (1094)
..+-+++.++|||++..|.|.+||+.. .+..+..|+..|+++.|++ ++|+|||.||+|++||++.. +...
T Consensus 93 VkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~--~S~~ 170 (839)
T KOG0269|consen 93 VKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK--KSKS 170 (839)
T ss_pred cccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc--cccc
Confidence 344477899999999999999999973 4557889999999999996 59999999999999999988 6788
Q ss_pred EecccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCe
Q 001349 850 QIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 928 (1094)
Q Consensus 850 ~l~~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~ 928 (1094)
++.+....|..|.|+| .+.+++++.+.|.+++||++.......+...|.++|.++. |+|++.+
T Consensus 171 t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~n-------whPnr~~--------- 234 (839)
T KOG0269|consen 171 TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLN-------WHPNREW--------- 234 (839)
T ss_pred cccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEe-------ecCCCce---------
Confidence 8888899999999999 7899999999999999999986644455556778888877 7775553
Q ss_pred EEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccE-EEEEE-CCCCEE
Q 001349 929 TKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVY-TASTS-LDGAAV 1006 (1094)
Q Consensus 929 i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~-las~s-~Dg~~I 1006 (1094)
|++|+.|+.|++||+.++...... ......+|..+.|-|...+ +++++ .++..|
T Consensus 235 -------------------lATGGRDK~vkiWd~t~~~~~~~~-----tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV 290 (839)
T KOG0269|consen 235 -------------------LATGGRDKMVKIWDMTDSRAKPKH-----TINTIAPVGRVKWRPARSYHLATCSMVVDTSV 290 (839)
T ss_pred -------------------eeecCCCccEEEEeccCCCcccee-----EEeecceeeeeeeccCccchhhhhhccccceE
Confidence 899999999999999876543211 1122368999999887554 34433 234589
Q ss_pred EEEECCCC-eEEEEec-CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCc
Q 001349 1007 KMWSTSNY-NMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQI 1054 (1094)
Q Consensus 1007 ~iwd~~~~-~~~~~~~-~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~ 1054 (1094)
+|||++.. -+..++. |...++.++|... .+.+++.||+|.--.++++.
T Consensus 291 ~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 291 HVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred EEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 99999864 4556666 8888999999762 89999999998766555543
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.3e-19 Score=191.63 Aligned_cols=268 Identities=15% Similarity=0.200 Sum_probs=208.5
Q ss_pred ccccccCcEEEEeeCCCCeEEEeCCcce-----eec--ccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEE
Q 001349 779 SPLAFEMVKVLSNGHDSSADFWNHRELV-----HVD--SSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQ 849 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~dg~I~vWd~~~~~-----~~~--~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~ 849 (1094)
..++...++++||| .|.|+|||+.... ..+ ......|.++..+|| .|++|++-.++.|||+.........
T Consensus 425 vtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprika 503 (705)
T KOG0639|consen 425 VTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKA 503 (705)
T ss_pred EEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhh
Confidence 33444566777765 5889999997321 111 123567888888887 8999999999999999877444444
Q ss_pred EecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeE
Q 001349 850 QIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKT 929 (1094)
Q Consensus 850 ~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i 929 (1094)
.+..-.-...+++.+||.+..+++..||.|.|||+.+.. .......|.+.+.++. +++||.
T Consensus 504 eltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-~VrqfqGhtDGascId-------is~dGt----------- 564 (705)
T KOG0639|consen 504 ELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCID-------ISKDGT----------- 564 (705)
T ss_pred hcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-eeecccCCCCCceeEE-------ecCCCc-----------
Confidence 454445567889999999999999999999999999853 3344445666666666 666665
Q ss_pred EEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEE
Q 001349 930 KLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMW 1009 (1094)
Q Consensus 930 ~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iw 1009 (1094)
+|.+|+-|++|+.||++++..+.. ......|.++.++|++.+++.|-.++ .+.+.
T Consensus 565 -----------------klWTGGlDntvRcWDlregrqlqq-------hdF~SQIfSLg~cP~~dWlavGMens-~vevl 619 (705)
T KOG0639|consen 565 -----------------KLWTGGLDNTVRCWDLREGRQLQQ-------HDFSSQIFSLGYCPTGDWLAVGMENS-NVEVL 619 (705)
T ss_pred -----------------eeecCCCccceeehhhhhhhhhhh-------hhhhhhheecccCCCccceeeecccC-cEEEE
Confidence 488999999999999999976532 12346799999999999999997775 77777
Q ss_pred ECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCc
Q 001349 1010 STSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGR 1087 (1094)
Q Consensus 1010 d~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~ 1087 (1094)
........+--.|.+-|.++.|.+- ++++.+.|+-+..|...-|..+...+ ....|.++.+|.|.++++||+.|..
T Consensus 620 h~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk--E~SsVlsCDIS~ddkyIVTGSGdkk 697 (705)
T KOG0639|consen 620 HTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--ESSSVLSCDISFDDKYIVTGSGDKK 697 (705)
T ss_pred ecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc--ccCcceeeeeccCceEEEecCCCcc
Confidence 7655444444447888999999875 89999999999999999888777764 5668999999999999999999999
Q ss_pred EEEEeC
Q 001349 1088 IQAWGL 1093 (1094)
Q Consensus 1088 I~iWdl 1093 (1094)
-.+|.+
T Consensus 698 ATVYeV 703 (705)
T KOG0639|consen 698 ATVYEV 703 (705)
T ss_pred eEEEEE
Confidence 888876
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.6e-18 Score=197.86 Aligned_cols=238 Identities=20% Similarity=0.267 Sum_probs=191.8
Q ss_pred ccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001349 810 SSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNE 887 (1094)
Q Consensus 810 ~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~ 887 (1094)
..|++.-+.|+|.|+ +|++++.||.|++|+..... ..-.++..|...|.+++. ++.+|++|+.+++|.+|.+..+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~-e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE-EEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc-cCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCC
Confidence 479999999999986 99999999999999876541 122233337778887776 4569999999999999999987
Q ss_pred ceE-EEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCc
Q 001349 888 EIH-CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGT 966 (1094)
Q Consensus 888 ~~~-~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~ 966 (1094)
+.. .+..+ .-++..++ |+.+|+ .++.|+.|-.|++.+..+..
T Consensus 87 ~~~~iL~Rf--tlp~r~~~-------v~g~g~----------------------------~iaagsdD~~vK~~~~~D~s 129 (933)
T KOG1274|consen 87 EEDTILARF--TLPIRDLA-------VSGSGK----------------------------MIAAGSDDTAVKLLNLDDSS 129 (933)
T ss_pred Cccceeeee--eccceEEE-------EecCCc----------------------------EEEeecCceeEEEEeccccc
Confidence 522 11111 22333333 555555 48889999999999998877
Q ss_pred eeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecC---------CCCEEEEEEeCC--E
Q 001349 967 FATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT---------LSEVRAMVVSSE--L 1035 (1094)
Q Consensus 967 ~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~---------~~~v~~l~~spd--~ 1035 (1094)
.. ..+.+|..+|.++.|+|++.++|+.+.|| .|++||+.++.+..++.. ...+..++|+|+ .
T Consensus 130 ~~------~~lrgh~apVl~l~~~p~~~fLAvss~dG-~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~ 202 (933)
T KOG1274|consen 130 QE------KVLRGHDAPVLQLSYDPKGNFLAVSSCDG-KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGT 202 (933)
T ss_pred hh------eeecccCCceeeeeEcCCCCEEEEEecCc-eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCe
Confidence 66 67889999999999999999999999997 999999999888777652 344678999999 6
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEecccCCc-ceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1036 VYLGCKGGTVEIWDQKRQIRIETLQTGTSG-KVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1036 l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~-~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
++..+.|+.|.+|+..++.....+...+.. .++++.|||+|+||++++.||.|.|||+.
T Consensus 203 la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 203 LAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred EEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence 888899999999999999988888544433 49999999999999999999999999973
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.2e-20 Score=208.44 Aligned_cols=247 Identities=18% Similarity=0.307 Sum_probs=205.1
Q ss_pred EEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeC--CEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecC
Q 001349 789 LSNGHDSSADFWNHRELVHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS 866 (1094)
Q Consensus 789 ~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fsp--d~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspd 866 (1094)
.....+-.+++|++.. ...|...|.++..-. ..+++|+.|..+-+|.+... ..+..+.+|..+|.++.|+++
T Consensus 8 m~~~~~t~Lr~~~~~~----~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp--~~i~S~~~hespIeSl~f~~~ 81 (825)
T KOG0267|consen 8 MKTKRATKLRVWDTRE----FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP--NAITSLTGHESPIESLTFDTS 81 (825)
T ss_pred ceeeeeeccccccchh----hhhhhhhhceeeeeccceeeccCCCceeeccccccCC--chhheeeccCCcceeeecCcc
Confidence 3444555677888753 346777787777633 38999999999999998776 677789999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCC
Q 001349 867 GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQG 946 (1094)
Q Consensus 867 g~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~ 946 (1094)
..+|+.|+.||+|++||+..++. ......|..++.++. |+|-|.+
T Consensus 82 E~LlaagsasgtiK~wDleeAk~-vrtLtgh~~~~~sv~-------f~P~~~~--------------------------- 126 (825)
T KOG0267|consen 82 ERLLAAGSASGTIKVWDLEEAKI-VRTLTGHLLNITSVD-------FHPYGEF--------------------------- 126 (825)
T ss_pred hhhhcccccCCceeeeehhhhhh-hhhhhccccCcceee-------eccceEE---------------------------
Confidence 99999999999999999998651 112334566666666 6665553
Q ss_pred EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCC
Q 001349 947 KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSE 1025 (1094)
Q Consensus 947 ~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~ 1025 (1094)
.+.|+.|+.+.+||++...+. ..+.+|...|..+.|+|+|.++++++.|. +++|||...|+....|. |...
T Consensus 127 -~a~gStdtd~~iwD~Rk~Gc~------~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~-tvki~d~~agk~~~ef~~~e~~ 198 (825)
T KOG0267|consen 127 -FASGSTDTDLKIWDIRKKGCS------HTYKSHTRVVDVLRLSPDGRWVASGGEDN-TVKIWDLTAGKLSKEFKSHEGK 198 (825)
T ss_pred -eccccccccceehhhhccCce------eeecCCcceeEEEeecCCCceeeccCCcc-eeeeeccccccccccccccccc
Confidence 577899999999999977776 55667889999999999999999998875 99999999999999999 8899
Q ss_pred EEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCC
Q 001349 1026 VRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSD 1085 (1094)
Q Consensus 1026 v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~D 1085 (1094)
+.++.|+|. .++.|+.|++|++||+++...+.... .....|.+.+|+|+++.+.+|..+
T Consensus 199 v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~-~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 199 VQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK-PETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ccccccCchhhhhccCCCCceeeeeccceeEEeeccC-CccCCceeeeecCCceeeecCchh
Confidence 999999998 78899999999999999998888874 456789999999999999888654
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.1e-19 Score=186.79 Aligned_cols=251 Identities=15% Similarity=0.223 Sum_probs=196.2
Q ss_pred cEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEE
Q 001349 786 VKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAI 863 (1094)
Q Consensus 786 ~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~f 863 (1094)
..+++|+.||.|++||.. .+...+..|.|.|..|++....+++++.|.+|+.|.+... +++++.+ .+.+..++-
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~---p~~tilg-~s~~~gIdh 155 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGP---PLHTILG-KSVYLGIDH 155 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccCC---cceeeec-ccccccccc
Confidence 468999999999999998 5778899999999999999999999999999999998774 6677653 456778888
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeE-EEEEeCCeEEEEcCCC------
Q 001349 864 LQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGI-KVHLRNGKTKLLNSSK------ 936 (1094)
Q Consensus 864 spdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l-~~~~~~g~i~l~~~~~------ 936 (1094)
+..++.++|+|.+ |-|||............. -+.+.++. |+|....+ +++..|+.+.++|...
T Consensus 156 ~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG-~Dti~svk-------fNpvETsILas~~sDrsIvLyD~R~~~Pl~K 225 (433)
T KOG0268|consen 156 HRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWG-ADSISSVK-------FNPVETSILASCASDRSIVLYDLRQASPLKK 225 (433)
T ss_pred ccccccccccCce--eeecccccCCccceeecC-CCceeEEe-------cCCCcchheeeeccCCceEEEecccCCccce
Confidence 8788899999875 999998764311111111 22344444 77776644 5555889999998632
Q ss_pred -----CceEEEEeCC--EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEE
Q 001349 937 -----YPKCLALVQG--KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMW 1009 (1094)
Q Consensus 937 -----~v~~l~~s~~--~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iw 1009 (1094)
.-+.++|+|. .+++|+.|..++.||++.-.... ....+|.+.|.+++|+|.|.-+++||.| ++|+||
T Consensus 226 Vi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~-----~v~~dhvsAV~dVdfsptG~EfvsgsyD-ksIRIf 299 (433)
T KOG0268|consen 226 VILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL-----NVHKDHVSAVMDVDFSPTGQEFVSGSYD-KSIRIF 299 (433)
T ss_pred eeeeccccceecCccccceeeccccccceehhhhhhcccc-----hhhcccceeEEEeccCCCcchhcccccc-ceEEEe
Confidence 3456777773 38899999999999998755332 5667899999999999999999999999 599999
Q ss_pred ECCCCeEEEEec--CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEE
Q 001349 1010 STSNYNMVGSLP--TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRI 1056 (1094)
Q Consensus 1010 d~~~~~~~~~~~--~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~ 1056 (1094)
..+.+.....+. .-..|.++.||-| ++++||+|+.|++|.....+.+
T Consensus 300 ~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 300 PVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred ecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence 998776544333 2356899999998 9999999999999987654433
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-19 Score=206.45 Aligned_cols=216 Identities=20% Similarity=0.390 Sum_probs=181.8
Q ss_pred ccccCcEEEEeeCCCCeEEEeCCc--ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCC
Q 001349 781 LAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTK 856 (1094)
Q Consensus 781 ~~~d~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~ 856 (1094)
....++.+++|+.|..+-+|.... .+..+.+|.++|.++.|+.+ +|++|+.+|+|++||+... +.++++.+|..
T Consensus 36 ~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA--k~vrtLtgh~~ 113 (825)
T KOG0267|consen 36 IRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA--KIVRTLTGHLL 113 (825)
T ss_pred eeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhh--hhhhhhhcccc
Confidence 334567899999999999999873 44557899999999999986 9999999999999999988 78899999999
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCC
Q 001349 857 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSK 936 (1094)
Q Consensus 857 ~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~ 936 (1094)
.+.++.|+|-+.+.++|+.|+.+++||++........ ..|...|..+. |+|+|++
T Consensus 114 ~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~-~s~~~vv~~l~-------lsP~Gr~----------------- 168 (825)
T KOG0267|consen 114 NITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTY-KSHTRVVDVLR-------LSPDGRW----------------- 168 (825)
T ss_pred CcceeeeccceEEeccccccccceehhhhccCceeee-cCCcceeEEEe-------ecCCCce-----------------
Confidence 9999999999999999999999999999843211111 12445555555 8888885
Q ss_pred CceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeE
Q 001349 937 YPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNM 1016 (1094)
Q Consensus 937 ~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~ 1016 (1094)
++.|+.|.++++||...|+.. ..|.+|...+.++.|+|...++++|+.|. ++++||+++...
T Consensus 169 -----------v~~g~ed~tvki~d~~agk~~------~ef~~~e~~v~sle~hp~e~Lla~Gs~d~-tv~f~dletfe~ 230 (825)
T KOG0267|consen 169 -----------VASGGEDNTVKIWDLTAGKLS------KEFKSHEGKVQSLEFHPLEVLLAPGSSDR-TVRFWDLETFEV 230 (825)
T ss_pred -----------eeccCCcceeeeecccccccc------cccccccccccccccCchhhhhccCCCCc-eeeeeccceeEE
Confidence 677888999999999999987 67778999999999999999999999996 999999999888
Q ss_pred EEEec-CCCCEEEEEEeCC--EEEEEEc
Q 001349 1017 VGSLP-TLSEVRAMVVSSE--LVYLGCK 1041 (1094)
Q Consensus 1017 ~~~~~-~~~~v~~l~~spd--~l~sgs~ 1041 (1094)
+.... ....|.+..|+++ .+++|..
T Consensus 231 I~s~~~~~~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 231 ISSGKPETDGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred eeccCCccCCceeeeecCCceeeecCch
Confidence 87776 4678999999999 3444443
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-17 Score=186.80 Aligned_cols=267 Identities=15% Similarity=0.201 Sum_probs=198.8
Q ss_pred ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCC--EEEEEeCCCcEE
Q 001349 805 LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE--MLYSGSLDKTAR 880 (1094)
Q Consensus 805 ~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~--~LaSgs~DgtI~ 880 (1094)
+..++.||++.|.+|+..|. +|++|+.||+|+||.+.|+ .|++++. ..+.|.||+|+|.+. .|+++-. +.+.
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg--Rcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~-~~~~ 467 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG--RCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVG-ECVL 467 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc--eEEEEEe-ecceeEEEEecCCCCceeEEEEec-CceE
Confidence 34567899999999999885 9999999999999999999 7888875 456899999999654 3444333 3344
Q ss_pred EEECCCCc------------------------------------eEEEEecccCccceeeeecCceEEEeeCCCeEEEEE
Q 001349 881 VWSIGNEE------------------------------------IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHL 924 (1094)
Q Consensus 881 vWdi~~~~------------------------------------~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~ 924 (1094)
|-+..-|. ........+..+|..+. |+..|.++++..
T Consensus 468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vt-------WHrkGDYlatV~ 540 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVT-------WHRKGDYLATVM 540 (733)
T ss_pred EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceee-------eecCCceEEEec
Confidence 44433221 00111122334444544 888999998877
Q ss_pred eCC---eEEEEc------------CCCCceEEEEeCCE--EEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEE
Q 001349 925 RNG---KTKLLN------------SSKYPKCLALVQGK--VYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHAL 987 (1094)
Q Consensus 925 ~~g---~i~l~~------------~~~~v~~l~~s~~~--l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl 987 (1094)
.++ .+.+.. ..+.|.++.|++.. ++++ .-..|++||+..+..+ +++......|.++
T Consensus 541 ~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVa-Tq~~vRiYdL~kqelv------KkL~tg~kwiS~m 613 (733)
T KOG0650|consen 541 PDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVA-TQRSVRIYDLSKQELV------KKLLTGSKWISSM 613 (733)
T ss_pred cCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEE-eccceEEEehhHHHHH------HHHhcCCeeeeee
Confidence 653 233333 24678999999843 5554 4578999999886655 4555556789999
Q ss_pred EEeCCccEEEEEECCCCEEEEEECCCC-eEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECC-------C--Cc
Q 001349 988 QVHNGLVYTASTSLDGAAVKMWSTSNY-NMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQK-------R--QI 1054 (1094)
Q Consensus 988 ~fs~~~~~las~s~Dg~~I~iwd~~~~-~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~-------t--~~ 1054 (1094)
+.||+|..++.++.|+ .+..||+.-+ ++.+++. |...+++++|++. ++++|+.||++.||.-. + --
T Consensus 614 sihp~GDnli~gs~d~-k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliV 692 (733)
T KOG0650|consen 614 SIHPNGDNLILGSYDK-KMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIV 692 (733)
T ss_pred eecCCCCeEEEecCCC-eeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceE
Confidence 9999999999999996 8999999754 5666666 7788999999998 79999999999998532 1 12
Q ss_pred EEEEecccCCcc----eEEEEEcCCCCEEEEEeCCCcEEEE
Q 001349 1055 RIETLQTGTSGK----VQCMALDDNEEFLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1055 ~~~~l~~~h~~~----I~~l~~Spdg~~L~sgs~DG~I~iW 1091 (1094)
++..+ .+|... |..+.|+|...+|++++.||+|++|
T Consensus 693 PlK~L-~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 693 PLKRL-RGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeeec-cCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 45566 477654 8899999999999999999999999
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4e-17 Score=169.53 Aligned_cols=260 Identities=15% Similarity=0.243 Sum_probs=183.9
Q ss_pred HhhhccccccccccCcEEEEeeCCCCeEEEeCC------cceeecccCCCcEEEEEEeC----CEEEEEECCCeEEEEec
Q 001349 771 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR------ELVHVDSSENGKVLSIACFR----DKIFSGHSDGTIKVWTG 840 (1094)
Q Consensus 771 ~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~------~~~~~~~~h~~~V~~l~fsp----d~LaSgs~Dg~I~vWd~ 840 (1094)
+|..+++...|.|+|+++++|+.|++|+|||.+ .+......|.+.|..|.|.+ +.+|+++.|+++.||.-
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE 90 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE 90 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence 456778889999999999999999999999964 34456678999999999975 39999999999999964
Q ss_pred C-------CCcceeEEEecccCCCeEEEEEec--CCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceE
Q 001349 841 R-------GSILHLIQQIREHTKAVTGLAILQ--SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSIL 911 (1094)
Q Consensus 841 ~-------t~~~~~~~~l~~H~~~V~sv~fsp--dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~ 911 (1094)
. +.++....++....+.|+.|.|.| -|-.+++++.||++|||+.-.-- -+........+..+
T Consensus 91 ~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~--nLs~W~Lq~Ei~~~------- 161 (361)
T KOG2445|consen 91 QEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM--NLSQWTLQHEIQNV------- 161 (361)
T ss_pred cccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcc--ccccchhhhhhhhc-------
Confidence 2 234566778888889999999999 48899999999999999875421 01111111111111
Q ss_pred EEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCC-----EEEEEEcC-----CeEEEEECCCCceeEEeccceeecCCC
Q 001349 912 CFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQG-----KVYCGCQD-----GAIQEIDLATGTFATIQTGHRKLLGKA 981 (1094)
Q Consensus 912 ~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~-----~l~sgs~D-----g~I~iwDl~~~~~~~~~~~~~~~~~h~ 981 (1094)
..|-|+ +.....|+.++++ .|++|+.+ +.++||....+...... ...+.+|.
T Consensus 162 -~~pp~~---------------~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~k--va~L~d~~ 223 (361)
T KOG2445|consen 162 -IDPPGK---------------NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLK--VAELPDHT 223 (361)
T ss_pred -cCCccc---------------ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeee--ehhcCCCC
Confidence 112222 1233455666543 37777766 47888876554322111 14567999
Q ss_pred CCeEEEEEeCC----ccEEEEEECCCCEEEEEECCCC--------------------eEEEEec-CCCCEEEEEEeCC--
Q 001349 982 NPVHALQVHNG----LVYTASTSLDGAAVKMWSTSNY--------------------NMVGSLP-TLSEVRAMVVSSE-- 1034 (1094)
Q Consensus 982 ~~V~sl~fs~~----~~~las~s~Dg~~I~iwd~~~~--------------------~~~~~~~-~~~~v~~l~~spd-- 1034 (1094)
.+|+.++|.|+ ...+++++.|| |+||++... +.+..+. |.+.|+.+.|+-.
T Consensus 224 dpI~di~wAPn~Gr~y~~lAvA~kDg--v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGt 301 (361)
T KOG2445|consen 224 DPIRDISWAPNIGRSYHLLAVATKDG--VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGT 301 (361)
T ss_pred CcceeeeeccccCCceeeEEEeecCc--EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeee
Confidence 99999999875 45788888886 999998731 1223333 6779999999755
Q ss_pred EEEEEEcCCeEEEEECC---CCcEEEEe
Q 001349 1035 LVYLGCKGGTVEIWDQK---RQIRIETL 1059 (1094)
Q Consensus 1035 ~l~sgs~dg~I~vwd~~---t~~~~~~l 1059 (1094)
.|.+.+.||.|++|... ..++...+
T Consensus 302 iLsStGdDG~VRLWkany~n~~kC~sv~ 329 (361)
T KOG2445|consen 302 ILSSTGDDGCVRLWKANYNNLWKCTSVL 329 (361)
T ss_pred EEeecCCCceeeehhhhhhhhheeeeEE
Confidence 78888999999999753 23444444
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.3e-17 Score=170.20 Aligned_cols=275 Identities=13% Similarity=0.182 Sum_probs=198.1
Q ss_pred cccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEe
Q 001349 776 RKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQI 851 (1094)
Q Consensus 776 ~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l 851 (1094)
...+.|+..|.++|.|..||.|.|||+. ....++.+|..+|++++||++ .|+|+|.|..|.+||+..| .+++.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g--s~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG--SPLKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCC--CceeEE
Confidence 3456678889999999999999999998 466788999999999999997 9999999999999999999 677777
Q ss_pred cccCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEE
Q 001349 852 REHTKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK 930 (1094)
Q Consensus 852 ~~H~~~V~sv~fspd-g~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~ 930 (1094)
. ...+|+.+.|+|. .+..+..-.+..-.+-++..+...++.... .+..... .+...|.+.|
T Consensus 104 r-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~-d~dln~s---as~~~fdr~g------------- 165 (405)
T KOG1273|consen 104 R-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDD-DGDLNSS---ASHGVFDRRG------------- 165 (405)
T ss_pred E-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCC-ccccccc---cccccccCCC-------------
Confidence 5 6789999999994 333333333444445555443222221111 1111100 0111233333
Q ss_pred EEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEE
Q 001349 931 LLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWS 1010 (1094)
Q Consensus 931 l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd 1010 (1094)
..|++|...|.+.+||..+-+++..+.-. ....|..+.|+..+.+++..+.| +.||.|+
T Consensus 166 ---------------~yIitGtsKGkllv~~a~t~e~vas~rit-----s~~~IK~I~~s~~g~~liiNtsD-RvIR~ye 224 (405)
T KOG1273|consen 166 ---------------KYIITGTSKGKLLVYDAETLECVASFRIT-----SVQAIKQIIVSRKGRFLIINTSD-RVIRTYE 224 (405)
T ss_pred ---------------CEEEEecCcceEEEEecchheeeeeeeec-----hheeeeEEEEeccCcEEEEecCC-ceEEEEe
Confidence 35899999999999999998877543211 12678899999999999998888 6999999
Q ss_pred CCC-------CeE--EEEec---CCCCEEEEEEeCC--EEEEEE-cCCeEEEEECCCCcEEEEecccCC-cceEEEEEcC
Q 001349 1011 TSN-------YNM--VGSLP---TLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQKRQIRIETLQTGTS-GKVQCMALDD 1074 (1094)
Q Consensus 1011 ~~~-------~~~--~~~~~---~~~~v~~l~~spd--~l~sgs-~dg~I~vwd~~t~~~~~~l~~~h~-~~I~~l~~Sp 1074 (1094)
++. +.+ .+.+. ....-.+++||.+ |++.|+ ....++||....|.+++.+. |.. .....+.|+|
T Consensus 225 ~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILh-G~kgE~l~DV~whp 303 (405)
T KOG1273|consen 225 ISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILH-GTKGEELLDVNWHP 303 (405)
T ss_pred hhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeec-CCchhheeeccccc
Confidence 863 111 12221 2334567888888 555555 45689999999999999994 555 5788999999
Q ss_pred CCCEEEEEeCCCcEEEEeC
Q 001349 1075 NEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1075 dg~~L~sgs~DG~I~iWdl 1093 (1094)
-...+++- ..|.|+||..
T Consensus 304 ~rp~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 304 VRPIIASI-ASGVVYIWAV 321 (405)
T ss_pred ceeeeeec-cCCceEEEEe
Confidence 88888877 7899999974
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-17 Score=181.51 Aligned_cols=237 Identities=19% Similarity=0.258 Sum_probs=179.9
Q ss_pred cccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecC-------CCc
Q 001349 776 RKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR-------GSI 844 (1094)
Q Consensus 776 ~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~-------t~~ 844 (1094)
....+..++|.+++.|+..|.|.+|.+. ..+.++..|-..|+|+.|+.| +|+||+.||.|.+|++. ++.
T Consensus 84 v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~ 163 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHS 163 (476)
T ss_pred eeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCC
Confidence 4455666788899888899999999998 567788999999999999987 99999999999999763 334
Q ss_pred ceeEEEecccCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEE
Q 001349 845 LHLIQQIREHTKAVTGLAILQS--GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKV 922 (1094)
Q Consensus 845 ~~~~~~l~~H~~~V~sv~fspd--g~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~ 922 (1094)
..+++.|.+|+-+|+++...+. ..+++|+|.|.++++||+..|. .+.....+..+.++. .+|-+..
T Consensus 164 ~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~--LLlti~fp~si~av~-------lDpae~~--- 231 (476)
T KOG0646|consen 164 VKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV--LLLTITFPSSIKAVA-------LDPAERV--- 231 (476)
T ss_pred ccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce--eeEEEecCCcceeEE-------EcccccE---
Confidence 5788999999999999998764 4689999999999999999984 333344456666666 5565554
Q ss_pred EEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCcee----------EEeccceeecCCCC--CeEEEEEe
Q 001349 923 HLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFA----------TIQTGHRKLLGKAN--PVHALQVH 990 (1094)
Q Consensus 923 ~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~----------~~~~~~~~~~~h~~--~V~sl~fs 990 (1094)
+++|+.+|.|.+.++.+-... ........+.||.+ +|+|++++
T Consensus 232 -------------------------~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais 286 (476)
T KOG0646|consen 232 -------------------------VYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIS 286 (476)
T ss_pred -------------------------EEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEe
Confidence 566666666666555432200 00011145778887 99999999
Q ss_pred CCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeC---CEEEEEEcCCeEEEEEC
Q 001349 991 NGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSS---ELVYLGCKGGTVEIWDQ 1050 (1094)
Q Consensus 991 ~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~sp---d~l~sgs~dg~I~vwd~ 1050 (1094)
-|+.++++|+.|| .|.|||+.+.++++++. ..++|+.+.+.| ..+..-...-.+-.|++
T Consensus 287 ~DgtlLlSGd~dg-~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~l 349 (476)
T KOG0646|consen 287 TDGTLLLSGDEDG-KVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHL 349 (476)
T ss_pred cCccEEEeeCCCC-CEEEEecchHHHHHHHhhhccccceeEeeccccceecccccCccCCchHh
Confidence 9999999999997 99999999999999998 678899888844 43333333344444543
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.2e-16 Score=179.30 Aligned_cols=238 Identities=20% Similarity=0.361 Sum_probs=189.3
Q ss_pred CCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccC-CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 001349 812 ENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHT-KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE 888 (1094)
Q Consensus 812 h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~-~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~ 888 (1094)
...+|++++|+.+ .||.+=.||.|-+|++..+ +-+...+.+|. ..|.+++|+ +|..|.|.+.+|+|.-||+.+++
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~-w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN-WFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLK 101 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCC-ceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCc
Confidence 3578999999985 9999999999999999886 34556666665 469999999 56678899999999999999975
Q ss_pred eEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCcee
Q 001349 889 IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFA 968 (1094)
Q Consensus 889 ~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~ 968 (1094)
.. .......+.|++++ .+|.+. .+++||.||.+..++...+...
T Consensus 102 ~~-~~~d~~gg~IWsia-------i~p~~~----------------------------~l~IgcddGvl~~~s~~p~~I~ 145 (691)
T KOG2048|consen 102 QK-YNIDSNGGAIWSIA-------INPENT----------------------------ILAIGCDDGVLYDFSIGPDKIT 145 (691)
T ss_pred ee-EEecCCCcceeEEE-------eCCccc----------------------------eEEeecCCceEEEEecCCceEE
Confidence 22 22233455666665 444333 4788999998888887777655
Q ss_pred EEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec---------CCCCEEEEEEeCC-EEEE
Q 001349 969 TIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---------TLSEVRAMVVSSE-LVYL 1038 (1094)
Q Consensus 969 ~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~---------~~~~v~~l~~spd-~l~s 1038 (1094)
.. ..+....+.|.++.|++++..+++|+.|| .|++||..++..+.... ...-|+++.+-.+ .+++
T Consensus 146 ~~----r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg-~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~s 220 (691)
T KOG2048|consen 146 YK----RSLMRQKSRVLSLSWNPTGTKIAGGSIDG-VIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIAS 220 (691)
T ss_pred EE----eecccccceEEEEEecCCccEEEecccCc-eEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEE
Confidence 32 34445568999999999999999999997 99999999988766322 1223677776554 8999
Q ss_pred EEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1039 GCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1039 gs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
|...|+|.+||...++++..+ ..|.+.|.+++..+++++++++|.|++|.-+..
T Consensus 221 gDS~G~V~FWd~~~gTLiqS~-~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~ 274 (691)
T KOG2048|consen 221 GDSAGTVTFWDSIFGTLIQSH-SCHDADVLALAVADNEDRVFSAGVDPKIIQYSL 274 (691)
T ss_pred ecCCceEEEEcccCcchhhhh-hhhhcceeEEEEcCCCCeEEEccCCCceEEEEe
Confidence 999999999999999999999 589999999999999999999999999877653
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.1e-16 Score=172.74 Aligned_cols=254 Identities=11% Similarity=0.053 Sum_probs=175.9
Q ss_pred cccccccCcEE-EEeeCCCCeEEEeCCc--ceeecccCCCcEEEEEEeCC--EE-EEEECCCeEEEEecCCCcceeEEEe
Q 001349 778 YSPLAFEMVKV-LSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KI-FSGHSDGTIKVWTGRGSILHLIQQI 851 (1094)
Q Consensus 778 ~~~~~~d~~~l-~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~fspd--~L-aSgs~Dg~I~vWd~~t~~~~~~~~l 851 (1094)
...+.+++..+ ++++.++.|++||... ....+..+. .+..++|+|+ .+ ++++.|+.|++||+.++ ..+..+
T Consensus 35 ~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~--~~~~~~ 111 (300)
T TIGR03866 35 GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETR--KVLAEI 111 (300)
T ss_pred ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCC--eEEeEe
Confidence 34566788766 5677889999999874 333333333 3567899986 45 45567899999999987 566666
Q ss_pred cccCCCeEEEEEecCCCEEEEEeCCC-cEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEE
Q 001349 852 REHTKAVTGLAILQSGEMLYSGSLDK-TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK 930 (1094)
Q Consensus 852 ~~H~~~V~sv~fspdg~~LaSgs~Dg-tI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~ 930 (1094)
.. ...+.+++|+|+|+++++++.++ .+.+||..+++..... ........+ .|+|+|+.+
T Consensus 112 ~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~~~-------~~s~dg~~l---------- 171 (300)
T TIGR03866 112 PV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV--LVDQRPRFA-------EFTADGKEL---------- 171 (300)
T ss_pred eC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE--EcCCCccEE-------EECCCCCEE----------
Confidence 43 34578899999999999998875 4677898876432211 111222333 377777752
Q ss_pred EEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCC--CCCeEEEEEeCCccEEEEEECCCCEEEE
Q 001349 931 LLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGK--ANPVHALQVHNGLVYTASTSLDGAAVKM 1008 (1094)
Q Consensus 931 l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h--~~~V~sl~fs~~~~~las~s~Dg~~I~i 1008 (1094)
++++..++.|.+||+.+++....+.... ...+ ......+.|++++.++..+..+++.+.+
T Consensus 172 -----------------~~~~~~~~~v~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 172 -----------------WVSSEIGGTVSVIDVATRKVIKKITFEI-PGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV 233 (300)
T ss_pred -----------------EEEcCCCCEEEEEEcCcceeeeeeeecc-cccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence 2344568999999999887654322110 0001 1123468899998875444333348999
Q ss_pred EECCCCeEEEEecCCCCEEEEEEeCC--EEEEE-EcCCeEEEEECCCCcEEEEecccCCcceEEEEEcC
Q 001349 1009 WSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLG-CKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDD 1074 (1094)
Q Consensus 1009 wd~~~~~~~~~~~~~~~v~~l~~spd--~l~sg-s~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Sp 1074 (1094)
||..+++....+.+...+.+++|+|+ +++++ ..+|.|.+||+.+++++..+.. ....++++|+|
T Consensus 234 ~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~ 300 (300)
T TIGR03866 234 VDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV--GRLPWGVVVRP 300 (300)
T ss_pred EECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc--ccccceeEeCC
Confidence 99999888877766678999999998 67765 4689999999999999999963 35668888875
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-17 Score=174.79 Aligned_cols=217 Identities=18% Similarity=0.252 Sum_probs=162.2
Q ss_pred ecccCCCeEEEEEecCC--CEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCe
Q 001349 851 IREHTKAVTGLAILQSG--EMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 928 (1094)
Q Consensus 851 l~~H~~~V~sv~fspdg--~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~ 928 (1094)
..+|.+.|+.+..++-| .+.++=+..|.|+|||+...- .++.... ..+. + ......
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l-~~l~~~~--~~~~----------~---------s~~~Pl 204 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHL-NALSEPG--LEVK----------D---------SEFRPL 204 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhh-hhhcCcc--cccc----------c---------cccCce
Confidence 34688888888887744 566677788999999997631 1111110 0000 0 000011
Q ss_pred EEEEcCCCCceEEEEeC---CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC-ccEEEEEECCCC
Q 001349 929 TKLLNSSKYPKCLALVQ---GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG-LVYTASTSLDGA 1004 (1094)
Q Consensus 929 i~l~~~~~~v~~l~~s~---~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~-~~~las~s~Dg~ 1004 (1094)
..+-.|.+.-+.+.|++ |.+++|.--+.|++|...+|..... ...+.+|+..|-.++|+|. ...+++||.||
T Consensus 205 ~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd---~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dg- 280 (440)
T KOG0302|consen 205 FTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVD---QRPFTGHTKSVEDLQWSPTEDGVFASCSCDG- 280 (440)
T ss_pred EEecccCccceeeecccccccccccCccccceEeeeeccCceeec---CccccccccchhhhccCCccCceEEeeecCc-
Confidence 11222445556777776 6689998889999999999876532 2567889999999999975 56789999997
Q ss_pred EEEEEECCCC---eEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCC---CcEEEEecccCCcceEEEEEcCCC
Q 001349 1005 AVKMWSTSNY---NMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKR---QIRIETLQTGTSGKVQCMALDDNE 1076 (1094)
Q Consensus 1005 ~I~iwd~~~~---~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t---~~~~~~l~~~h~~~I~~l~~Spdg 1076 (1094)
+|+|||++.+ .++.+-.|.+.|+.+.|+.+ +|++|++||+++|||+++ ++++..| ..|..+|+++.|+|..
T Consensus 281 sIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~f-k~Hk~pItsieW~p~e 359 (440)
T KOG0302|consen 281 SIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATF-KYHKAPITSIEWHPHE 359 (440)
T ss_pred eEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeE-EeccCCeeEEEecccc
Confidence 9999999987 45555558899999999988 799999999999999875 6788888 4799999999999854
Q ss_pred -CEEEEEeCCCcEEEEeCC
Q 001349 1077 -EFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1077 -~~L~sgs~DG~I~iWdls 1094 (1094)
..|+++|.|..|.|||++
T Consensus 360 ~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 360 DSVIAASGEDNQITIWDLS 378 (440)
T ss_pred CceEEeccCCCcEEEEEee
Confidence 678888999999999985
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-16 Score=163.60 Aligned_cols=245 Identities=19% Similarity=0.259 Sum_probs=175.8
Q ss_pred eecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCc----------ceeE---EEecccCCCeEEEEEec-CCCE
Q 001349 807 HVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSI----------LHLI---QQIREHTKAVTGLAILQ-SGEM 869 (1094)
Q Consensus 807 ~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~----------~~~~---~~l~~H~~~V~sv~fsp-dg~~ 869 (1094)
.....|.+.|.++...+. ++++|+.||.|.|||++... ..++ ..-.+|.-.|.++.|-| |.-+
T Consensus 37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence 345679999999999873 99999999999999997541 0111 11246788899999999 7778
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEE
Q 001349 870 LYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVY 949 (1094)
Q Consensus 870 LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~ 949 (1094)
+.++|.|.+++|||+++- +....+..++.|++-+ ++|-.. +.-.++
T Consensus 117 FtssSFDhtlKVWDtnTl--Q~a~~F~me~~VYsha-------mSp~a~-------------------------sHcLiA 162 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTL--QEAVDFKMEGKVYSHA-------MSPMAM-------------------------SHCLIA 162 (397)
T ss_pred eecccccceEEEeecccc--eeeEEeecCceeehhh-------cChhhh-------------------------cceEEE
Confidence 999999999999999985 4444455566666655 333211 112488
Q ss_pred EEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCcc-EEEEEECCCCEEEEEECCCC-eEEEEe-------
Q 001349 950 CGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLV-YTASTSLDGAAVKMWSTSNY-NMVGSL------- 1020 (1094)
Q Consensus 950 sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~-~las~s~Dg~~I~iwd~~~~-~~~~~~------- 1020 (1094)
+|..|-.|++.|+.+|... ..+.||.+.|.++.|+|... .+++++.|| .|++||++.- .+...+
T Consensus 163 ~gtr~~~VrLCDi~SGs~s------H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg-~irlWDiRrasgcf~~lD~hn~k~ 235 (397)
T KOG4283|consen 163 AGTRDVQVRLCDIASGSFS------HTLSGHRDGVLAVEWSPSSEWVLATGSADG-AIRLWDIRRASGCFRVLDQHNTKR 235 (397)
T ss_pred EecCCCcEEEEeccCCcce------eeeccccCceEEEEeccCceeEEEecCCCc-eEEEEEeecccceeEEeecccCcc
Confidence 8999999999999999987 67889999999999998655 467778886 9999999753 222222
Q ss_pred --------cCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEE----------------EecccCCcceEEEEEcC
Q 001349 1021 --------PTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIE----------------TLQTGTSGKVQCMALDD 1074 (1094)
Q Consensus 1021 --------~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~----------------~l~~~h~~~I~~l~~Sp 1074 (1094)
.|.+.|.+++|..| ++++.+.|..+++|+..+|.... ....+|.+.+.-+-..
T Consensus 236 ~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~- 314 (397)
T KOG4283|consen 236 PPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPND- 314 (397)
T ss_pred CccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecC-
Confidence 15677999999988 89999999999999988764211 0112222222222111
Q ss_pred CCCEEEEEeCCCcEEEEeC
Q 001349 1075 NEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1075 dg~~L~sgs~DG~I~iWdl 1093 (1094)
++-.|++..+...|+.|+.
T Consensus 315 ~~lall~~~sgs~ir~l~~ 333 (397)
T KOG4283|consen 315 GSLALLNLLEGSFVRRLST 333 (397)
T ss_pred CeEEEEEccCceEEEeeec
Confidence 3345666666777888875
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.6e-17 Score=170.65 Aligned_cols=244 Identities=16% Similarity=0.210 Sum_probs=179.2
Q ss_pred ecccCCCcEEEEEEeC--C--EEEEEECCCeEEEEecCC--------------CcceeEEEecccCCCeEEEEEecC-CC
Q 001349 808 VDSSENGKVLSIACFR--D--KIFSGHSDGTIKVWTGRG--------------SILHLIQQIREHTKAVTGLAILQS-GE 868 (1094)
Q Consensus 808 ~~~~h~~~V~~l~fsp--d--~LaSgs~Dg~I~vWd~~t--------------~~~~~~~~l~~H~~~V~sv~fspd-g~ 868 (1094)
...+|.+.+..+.-++ + +.++-+..|.|+|||+.. ....++.++.+|.+.=..++|||- ..
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 3446777777766654 3 777778889999998752 234678899999999999999992 23
Q ss_pred EEEEEeCCCcEEEEECCCCceEEE--EecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCC
Q 001349 869 MLYSGSLDKTARVWSIGNEEIHCV--QVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQG 946 (1094)
Q Consensus 869 ~LaSgs~DgtI~vWdi~~~~~~~~--~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~ 946 (1094)
.|+||.--+.|++|...+|....- ....|...|..+. |+|..+ +
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLq-------WSptE~---------------------------~ 271 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQ-------WSPTED---------------------------G 271 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhc-------cCCccC---------------------------c
Confidence 477888788999999988763321 1223445555554 455443 3
Q ss_pred EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCC---CeEEEEec-C
Q 001349 947 KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN---YNMVGSLP-T 1022 (1094)
Q Consensus 947 ~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~---~~~~~~~~-~ 1022 (1094)
.+++|+.||+|+|||++.+..... .....|...|+.+.|+....++++|+.|| +++|||++. ++++..|+ |
T Consensus 272 vfaScS~DgsIrIWDiRs~~~~~~----~~~kAh~sDVNVISWnr~~~lLasG~DdG-t~~iwDLR~~~~~~pVA~fk~H 346 (440)
T KOG0302|consen 272 VFASCSCDGSIRIWDIRSGPKKAA----VSTKAHNSDVNVISWNRREPLLASGGDDG-TLSIWDLRQFKSGQPVATFKYH 346 (440)
T ss_pred eEEeeecCceEEEEEecCCCccce----eEeeccCCceeeEEccCCcceeeecCCCc-eEEEEEhhhccCCCcceeEEec
Confidence 589999999999999999843322 22367899999999998888999998886 999999985 56788888 8
Q ss_pred CCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCcE--------E-------EEecccCC--cceEEEEEcCCC-CEEEE
Q 001349 1023 LSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIR--------I-------ETLQTGTS--GKVQCMALDDNE-EFLVI 1081 (1094)
Q Consensus 1023 ~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~~--------~-------~~l~~~h~--~~I~~l~~Spdg-~~L~s 1081 (1094)
..+|+++.|+|. .+++++.|+.|.+||+..-.- . ..+..-|. ..|..+.|++.- .++++
T Consensus 347 k~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvs 426 (440)
T KOG0302|consen 347 KAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVS 426 (440)
T ss_pred cCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEE
Confidence 899999999986 789999999999999753110 0 01112343 378889998864 47788
Q ss_pred EeCCCcEEEE
Q 001349 1082 GTSDGRIQAW 1091 (1094)
Q Consensus 1082 gs~DG~I~iW 1091 (1094)
.+.||. .||
T Consensus 427 Ta~dGf-nVf 435 (440)
T KOG0302|consen 427 TAIDGF-NVF 435 (440)
T ss_pred ecccce-eEE
Confidence 888884 444
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-17 Score=168.68 Aligned_cols=278 Identities=16% Similarity=0.214 Sum_probs=199.0
Q ss_pred ceeecccCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEec-ccCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 001349 805 LVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIR-EHTKAVTGLAILQSGEMLYSGSLDKTARVW 882 (1094)
Q Consensus 805 ~~~~~~~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~-~H~~~V~sv~fspdg~~LaSgs~DgtI~vW 882 (1094)
+..++.+|.+.|+++.|-.+ +|++|..-|.|++|++.+. .....+. .|...|+.+..-|+ ..+.+-+.|+++.+|
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~--r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTE--RDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILW 82 (323)
T ss_pred CeeEeccccchheehhhccchhhhcccccceEEEEEeecC--ccchhhhhhccceeeceeecCC-cchhhcCCCceEEEE
Confidence 45567799999999999876 9999999999999999998 4555566 57788999988887 568899999999999
Q ss_pred ECCCCceEEEEecccCccceeeeecCceEEEeeCCCe---EEEEEeC-------------CeEEEEcC-----CCCceEE
Q 001349 883 SIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAG---IKVHLRN-------------GKTKLLNS-----SKYPKCL 941 (1094)
Q Consensus 883 di~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~---l~~~~~~-------------g~i~l~~~-----~~~v~~l 941 (1094)
++..+....+. .-.++++.|+... +.++++. +...... -.+.+-+. .+.+.|.
T Consensus 83 ~ia~s~~i~i~----Si~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~ 156 (323)
T KOG0322|consen 83 TIAYSAFISIH----SIVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQ 156 (323)
T ss_pred EccCcceEEEe----eeeccccccccce--eccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeee
Confidence 99886422211 1233444433321 2222221 1111111 11122221 2445565
Q ss_pred EEe--CC---EEEEEEcCCeEEEEECCCCceeEEeccc----eeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECC
Q 001349 942 ALV--QG---KVYCGCQDGAIQEIDLATGTFATIQTGH----RKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS 1012 (1094)
Q Consensus 942 ~~s--~~---~l~sgs~Dg~I~iwDl~~~~~~~~~~~~----~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~ 1012 (1094)
.+. .+ .+++|..+|.+.+||+.++..+..++.. .....|..+|.++.|.+....=++++.++ .+..|++.
T Consensus 157 ~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~d-kl~~~Sl~ 235 (323)
T KOG0322|consen 157 DKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADD-KLVMYSLN 235 (323)
T ss_pred eccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccc-cceeeeec
Confidence 533 12 2788999999999999998655443322 23456889999999986655556777775 78888886
Q ss_pred C--CeEEE--Eec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCC
Q 001349 1013 N--YNMVG--SLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSD 1085 (1094)
Q Consensus 1013 ~--~~~~~--~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~D 1085 (1094)
. +.+.. .+. .+-.+..+.+-|| .++++++|+.||||+.++..++..++ -|.+.|++++|+||...+++++.|
T Consensus 236 ~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk-yHsagvn~vAfspd~~lmAaaskD 314 (323)
T KOG0322|consen 236 HSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK-YHSAGVNAVAFSPDCELMAAASKD 314 (323)
T ss_pred cccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh-hhhcceeEEEeCCCCchhhhccCC
Confidence 4 32221 111 3455777788887 89999999999999999999999994 799999999999999999999999
Q ss_pred CcEEEEeC
Q 001349 1086 GRIQAWGL 1093 (1094)
Q Consensus 1086 G~I~iWdl 1093 (1094)
++|.+|++
T Consensus 315 ~rISLWkL 322 (323)
T KOG0322|consen 315 ARISLWKL 322 (323)
T ss_pred ceEEeeec
Confidence 99999986
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-17 Score=178.29 Aligned_cols=247 Identities=14% Similarity=0.165 Sum_probs=190.7
Q ss_pred EEEEeeCCCCeEEEeCCcc----eeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEE
Q 001349 787 KVLSNGHDSSADFWNHREL----VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTG 860 (1094)
Q Consensus 787 ~l~s~s~dg~I~vWd~~~~----~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~s 860 (1094)
.+++.+.|..+++|.-... ..+.......-.|++.... ++++|+..|+|+|||++.. .+.+.+++|+..|++
T Consensus 49 vvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k--l~hr~lkdh~stvt~ 126 (673)
T KOG4378|consen 49 VVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAK--LIHRFLKDHQSTVTY 126 (673)
T ss_pred EEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHH--HHhhhccCCcceeEE
Confidence 4455677889999976522 1111122223445555443 9999999999999999966 678889999999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceE
Q 001349 861 LAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKC 940 (1094)
Q Consensus 861 v~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~ 940 (1094)
|.++....+||+++..|.|.|..+.++.......++....|.-+. |+|..+.
T Consensus 127 v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~-------ys~skr~--------------------- 178 (673)
T KOG4378|consen 127 VDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLR-------YSPSKRF--------------------- 178 (673)
T ss_pred EEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEee-------cccccce---------------------
Confidence 999999999999999999999999987533333333333333333 4444443
Q ss_pred EEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeC-CccEEEEEECCCCEEEEEECCCCeEEEE
Q 001349 941 LALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDGAAVKMWSTSNYNMVGS 1019 (1094)
Q Consensus 941 l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~-~~~~las~s~Dg~~I~iwd~~~~~~~~~ 1019 (1094)
.|.+++.+|.|.+||+....++. .-...|..+...++|+| +..++++.+.| +.|.+||++.......
T Consensus 179 ------lL~~asd~G~VtlwDv~g~sp~~-----~~~~~HsAP~~gicfspsne~l~vsVG~D-kki~~yD~~s~~s~~~ 246 (673)
T KOG4378|consen 179 ------LLSIASDKGAVTLWDVQGMSPIF-----HASEAHSAPCRGICFSPSNEALLVSVGYD-KKINIYDIRSQASTDR 246 (673)
T ss_pred ------eeEeeccCCeEEEEeccCCCccc-----chhhhccCCcCcceecCCccceEEEeccc-ceEEEeecccccccce
Confidence 37889999999999998776653 33457999999999997 56678888888 4999999998888888
Q ss_pred ecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCc-EEEEecccCCcceEEEEEcCCC
Q 001349 1020 LPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI-RIETLQTGTSGKVQCMALDDNE 1076 (1094)
Q Consensus 1020 ~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~-~~~~l~~~h~~~I~~l~~Spdg 1076 (1094)
+.-..+...++|+++ ++++|+..|.|..||++..+ ++.++ ..|...|++++|-|.-
T Consensus 247 l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~-sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 247 LTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVR-SAHDASVTRVAFQPSP 305 (673)
T ss_pred eeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEe-eecccceeEEEeeecc
Confidence 888888999999998 79999999999999998654 66666 6899999999997753
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.4e-17 Score=168.24 Aligned_cols=209 Identities=19% Similarity=0.312 Sum_probs=150.0
Q ss_pred EEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCce---EEEEecccCccceeeeecCceEEEeeCCCeEEEEEe
Q 001349 849 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEI---HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR 925 (1094)
Q Consensus 849 ~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~---~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~ 925 (1094)
..+++|.+.|++++|+.||++|+|++.|++|++|+++.-+. +++...-.-+. +..+.|+||-+-+++...
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dh-------pT~V~FapDc~s~vv~~~ 152 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDH-------PTRVVFAPDCKSVVVSVK 152 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCC-------ceEEEECCCcceEEEEEc
Confidence 45689999999999999999999999999999999987331 11111111112 233448888776544332
Q ss_pred CCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCC---CceeEEe---ccceeecCCCCCeEEEEEeCCccEEEEE
Q 001349 926 NGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT---GTFATIQ---TGHRKLLGKANPVHALQVHNGLVYTAST 999 (1094)
Q Consensus 926 ~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~---~~~~~~~---~~~~~~~~h~~~V~sl~fs~~~~~las~ 999 (1094)
...++++|.+.. |.....+ ....--..|...+..+-.-.++.+++++
T Consensus 153 ---------------------------~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsa 205 (420)
T KOG2096|consen 153 ---------------------------RGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSA 205 (420)
T ss_pred ---------------------------cCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEe
Confidence 334455554432 1111111 0001123355677777778999999999
Q ss_pred ECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECC---CC-----cEEEEecccCCcceE
Q 001349 1000 SLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQK---RQ-----IRIETLQTGTSGKVQ 1068 (1094)
Q Consensus 1000 s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~---t~-----~~~~~l~~~h~~~I~ 1068 (1094)
+.|. .|.+||++ |+.+.++. ....-...++||+ ++++++..-.|+||.+- .| ..+..+ .||...|.
T Consensus 206 s~dt-~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~L-kGH~saV~ 282 (420)
T KOG2096|consen 206 SLDT-KICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSL-KGHQSAVL 282 (420)
T ss_pred cCCC-cEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhhee-ccchhhee
Confidence 9985 99999998 88888887 4455667788998 78888889999999853 22 245566 59999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1069 CMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1069 ~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
.++||++...++|.+.||+++|||++
T Consensus 283 ~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 283 AAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred eeeeCCCcceeEEEecCCcEEEeecc
Confidence 99999999999999999999999974
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-16 Score=173.00 Aligned_cols=271 Identities=18% Similarity=0.228 Sum_probs=183.8
Q ss_pred ccCcEEEEeeCC---CCeEEEeCCcce-eecccC----CCcEEEEEEeC---------CEEEEEECCCeEEEEecCCCc-
Q 001349 783 FEMVKVLSNGHD---SSADFWNHRELV-HVDSSE----NGKVLSIACFR---------DKIFSGHSDGTIKVWTGRGSI- 844 (1094)
Q Consensus 783 ~d~~~l~s~s~d---g~I~vWd~~~~~-~~~~~h----~~~V~~l~fsp---------d~LaSgs~Dg~I~vWd~~t~~- 844 (1094)
+..+.|+++-.+ ..+.+|-+.+.- ..+..| .....|+.|.. +++|.|+.|..|.|||+.-..
T Consensus 135 psDnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~ 214 (463)
T KOG0270|consen 135 PSDNLILCARNEDDVSYLEVYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDA 214 (463)
T ss_pred cCCcEEEEeeccCCceEEEEEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccc
Confidence 335555555443 345555554222 223333 23346777742 499999999999999975210
Q ss_pred ceeEEE------------------ecccCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeee
Q 001349 845 LHLIQQ------------------IREHTKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLA 905 (1094)
Q Consensus 845 ~~~~~~------------------l~~H~~~V~sv~fspd-g~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~ 905 (1094)
..+..+ -.+|++.|.+++|+.. .+.|+|||.|.||++||+.+|+...... .+...|.++.
T Consensus 215 v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~-~~~k~Vq~l~ 293 (463)
T KOG0270|consen 215 VLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT-HHGKKVQTLE 293 (463)
T ss_pred cccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh-hcCCceeEEE
Confidence 011111 2379999999999874 6789999999999999999986433222 2455555555
Q ss_pred ecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeE
Q 001349 906 VSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVH 985 (1094)
Q Consensus 906 ~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~ 985 (1094)
|.|.. +..+++|+.|++|.+.|.+..... .......+.|-
T Consensus 294 -------wh~~~---------------------------p~~LLsGs~D~~V~l~D~R~~~~s------~~~wk~~g~VE 333 (463)
T KOG0270|consen 294 -------WHPYE---------------------------PSVLLSGSYDGTVALKDCRDPSNS------GKEWKFDGEVE 333 (463)
T ss_pred -------ecCCC---------------------------ceEEEeccccceEEeeeccCcccc------CceEEeccceE
Confidence 33222 135899999999999999953222 12222346789
Q ss_pred EEEEeCCccEEEEEECCCCEEEEEECCCC-eEEEEec-CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCcEEEEec
Q 001349 986 ALQVHNGLVYTASTSLDGAAVKMWSTSNY-NMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQ 1060 (1094)
Q Consensus 986 sl~fs~~~~~las~s~Dg~~I~iwd~~~~-~~~~~~~-~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~~~~~l~ 1060 (1094)
.++|++.....+.++.|+++|+-+|+++. +++.++. |.+.|.++++++. ++++++.|+.|++|++..-..-....
T Consensus 334 kv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~ 413 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE 413 (463)
T ss_pred EEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc
Confidence 99998776655555555569999999974 8999988 8999999999865 89999999999999986543321110
Q ss_pred -ccCCcceEEEEEcCCCC-EEEEEeCCCcEEEEeCC
Q 001349 1061 -TGTSGKVQCMALDDNEE-FLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1061 -~~h~~~I~~l~~Spdg~-~L~sgs~DG~I~iWdls 1094 (1094)
.-.-+...|.++.|+-. +++.|+..+.++|||+.
T Consensus 414 ~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 414 HSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred ccccccceeecccCCCcceEEEecCccceEEEeecc
Confidence 11123467777877664 57788888899999973
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.3e-16 Score=168.39 Aligned_cols=281 Identities=17% Similarity=0.230 Sum_probs=188.9
Q ss_pred EEEEeeCCCCeEEEeCC-----------cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecC--------C---
Q 001349 787 KVLSNGHDSSADFWNHR-----------ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR--------G--- 842 (1094)
Q Consensus 787 ~l~s~s~dg~I~vWd~~-----------~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~--------t--- 842 (1094)
+++||+.|..|++|.+. .....+..|+..|+++.|+|+ .++||+.+|.|.+|... +
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 89999999999999765 123457789999999999997 99999999999999765 2
Q ss_pred ---CcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCe
Q 001349 843 ---SILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAG 919 (1094)
Q Consensus 843 ---~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~ 919 (1094)
..+...+.+.+|...|..++|+||+.++++++.|.++++||+..|.+.. ...+|..-+..++ |.|-+++
T Consensus 108 ~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~-~~~dh~~yvqgva-------wDpl~qy 179 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLA-ILDDHEHYVQGVA-------WDPLNQY 179 (434)
T ss_pred hCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEe-eccccccccceee-------cchhhhh
Confidence 2256667788999999999999999999999999999999999986333 3345666677776 8888888
Q ss_pred EEEEEeCCeEEEEcC--CCCceEEEEe--CCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccE
Q 001349 920 IKVHLRNGKTKLLNS--SKYPKCLALV--QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVY 995 (1094)
Q Consensus 920 l~~~~~~g~i~l~~~--~~~v~~l~~s--~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~ 995 (1094)
+++.+.+...+.+.. ...+.++... +....-.......++|.=++.+ .-...++|+|++.+
T Consensus 180 v~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlk---------------sFFrRlsfTPdG~l 244 (434)
T KOG1009|consen 180 VASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLK---------------SFFRRLSFTPDGSL 244 (434)
T ss_pred hhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchh---------------hhhhhcccCCCCcE
Confidence 877777664333322 2222332210 0111111111222333222211 12345667788877
Q ss_pred EEEEEC----CC----CEEEEEECCC-CeEEEEec-CCCCEEEEEEeC------------------C-EEEEEEcCCeEE
Q 001349 996 TASTSL----DG----AAVKMWSTSN-YNMVGSLP-TLSEVRAMVVSS------------------E-LVYLGCKGGTVE 1046 (1094)
Q Consensus 996 las~s~----Dg----~~I~iwd~~~-~~~~~~~~-~~~~v~~l~~sp------------------d-~l~sgs~dg~I~ 1046 (1094)
+++.+. ++ ++.++|+-.. .++...++ .......+.++| - .+++....+.|+
T Consensus 245 lvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svy 324 (434)
T KOG1009|consen 245 LVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVY 324 (434)
T ss_pred EEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEE
Confidence 776421 11 1234444332 22333333 223344444443 1 233334456899
Q ss_pred EEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEE
Q 001349 1047 IWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQA 1090 (1094)
Q Consensus 1047 vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~i 1090 (1094)
|||.++..++.....-|-..|++++|++||.+|+..|.||...+
T Consensus 325 vydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 325 VYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred EeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 99999999998887789999999999999999999999997654
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-15 Score=173.32 Aligned_cols=322 Identities=19% Similarity=0.220 Sum_probs=226.6
Q ss_pred HHHHHHHhhhccccccccccCcEEEEeeCCCCeEEEeCCcc--ee-------ecccCCCcEEEEEEeCC--EEEEEECCC
Q 001349 765 MKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHREL--VH-------VDSSENGKVLSIACFRD--KIFSGHSDG 833 (1094)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~--~~-------~~~~h~~~V~~l~fspd--~LaSgs~Dg 833 (1094)
....+.+|...+....+++++..|++++.|.++.+|...+. +. ...+..+..+...|+|+ .+++-+..|
T Consensus 259 ~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~G 338 (764)
T KOG1063|consen 259 FEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTG 338 (764)
T ss_pred hhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccC
Confidence 44566788889999999999999999999999999987632 11 12234567899999997 788999999
Q ss_pred eEEEEecC-CCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc--eEEE-EecccCccceeeeecCc
Q 001349 834 TIKVWTGR-GSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE--IHCV-QVHDIKDQIQNLAVSNS 909 (1094)
Q Consensus 834 ~I~vWd~~-t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~--~~~~-~~~~~~~~V~~v~~~~~ 909 (1094)
-.++|... ...+.....+.||.+.|.+++|+|.|.+|+|+|.|.|-|++---..+ .+.+ ...-|.-.+.++++-+.
T Consensus 339 g~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~ 418 (764)
T KOG1063|consen 339 GFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE 418 (764)
T ss_pred cEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC
Confidence 99999833 33345556678999999999999999999999999999997654222 1111 11112223333332221
Q ss_pred eEEE-----------------------------------eeCCCeEEEEE-----------eCCe---------------
Q 001349 910 ILCF-----------------------------------IPQGAGIKVHL-----------RNGK--------------- 928 (1094)
Q Consensus 910 ~~~f-----------------------------------spdg~~l~~~~-----------~~g~--------------- 928 (1094)
...| .|+|..+-... .+|.
T Consensus 419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~ 498 (764)
T KOG1063|consen 419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC 498 (764)
T ss_pred CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence 0001 11111110000 0000
Q ss_pred --------------------EEEEcCCCCceEEEEeC--CEEEEEEcCC-----eEEEEECCCCceeEEeccceeecCCC
Q 001349 929 --------------------TKLLNSSKYPKCLALVQ--GKVYCGCQDG-----AIQEIDLATGTFATIQTGHRKLLGKA 981 (1094)
Q Consensus 929 --------------------i~l~~~~~~v~~l~~s~--~~l~sgs~Dg-----~I~iwDl~~~~~~~~~~~~~~~~~h~ 981 (1094)
-++|.|.-.|.+++.++ +.+++++... .|++|+..+-... ..+.+|+
T Consensus 499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~------~~L~~Hs 572 (764)
T KOG1063|consen 499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQV------QELEGHS 572 (764)
T ss_pred hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhh------heecccc
Confidence 02333455689999985 4577776654 5899998776655 5678899
Q ss_pred CCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeE-EEE---ec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCC-
Q 001349 982 NPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNM-VGS---LP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQ- 1053 (1094)
Q Consensus 982 ~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~-~~~---~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~- 1053 (1094)
-.|+.++|+||+.++++.+.| +++.+|....... -.. .+ |...|+...|+|+ +++++|.|.+|.||.....
T Consensus 573 LTVT~l~FSpdg~~LLsvsRD-Rt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~ 651 (764)
T KOG1063|consen 573 LTVTRLAFSPDGRYLLSVSRD-RTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLR 651 (764)
T ss_pred eEEEEEEECCCCcEEEEeecC-ceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCch
Confidence 999999999999999999999 5999999854321 111 22 6778999999999 8999999999999998877
Q ss_pred -cEEEEe-cccCCcceEEEEEcC-----CCCEEEEEeCCCcEEEEeC
Q 001349 1054 -IRIETL-QTGTSGKVQCMALDD-----NEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1054 -~~~~~l-~~~h~~~I~~l~~Sp-----dg~~L~sgs~DG~I~iWdl 1093 (1094)
+.+..+ -..+...|+.++|.| .+..++.|-..|.|.+|..
T Consensus 652 d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~ 698 (764)
T KOG1063|consen 652 DKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRR 698 (764)
T ss_pred hhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEec
Confidence 433331 124778999999976 2337788889999999974
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-16 Score=172.65 Aligned_cols=257 Identities=14% Similarity=0.171 Sum_probs=185.1
Q ss_pred EeeCCCCeEEEeCC--cceeecccC--CCcEEEEEEeCC-EEEE--EECCCeEEEEecCC--CcceeEEEecccCCCeEE
Q 001349 790 SNGHDSSADFWNHR--ELVHVDSSE--NGKVLSIACFRD-KIFS--GHSDGTIKVWTGRG--SILHLIQQIREHTKAVTG 860 (1094)
Q Consensus 790 s~s~dg~I~vWd~~--~~~~~~~~h--~~~V~~l~fspd-~LaS--gs~Dg~I~vWd~~t--~~~~~~~~l~~H~~~V~s 860 (1094)
.++....+++||+. +....+..| .-.+.++.|+.. .|++ .+.|..|++|.-.+ +....+....+. .-.|
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~C 84 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFC 84 (673)
T ss_pred eeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHH
Confidence 34445578999987 222222222 234899999875 4444 45788999996543 333334444333 3344
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceE
Q 001349 861 LAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKC 940 (1094)
Q Consensus 861 v~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~ 940 (1094)
++......++++|+..+.|+|||++.. +......+|.+.|.++
T Consensus 85 v~~~s~S~y~~sgG~~~~Vkiwdl~~k-l~hr~lkdh~stvt~v------------------------------------ 127 (673)
T KOG4378|consen 85 VACASQSLYEISGGQSGCVKIWDLRAK-LIHRFLKDHQSTVTYV------------------------------------ 127 (673)
T ss_pred HhhhhcceeeeccCcCceeeehhhHHH-HHhhhccCCcceeEEE------------------------------------
Confidence 444445589999999999999999853 2222223344444444
Q ss_pred EEEe--CCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEE
Q 001349 941 LALV--QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVG 1018 (1094)
Q Consensus 941 l~~s--~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~ 1018 (1094)
.++ +.+|++++..|.|.+..+.++.....+.. +....|.-+.|++...++.+...|++.|.+||+....++.
T Consensus 128 -~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~-----~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~ 201 (673)
T KOG4378|consen 128 -DYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI-----DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIF 201 (673)
T ss_pred -EecCCcceeEEeccCCcEEEEecccCccccceec-----CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCccc
Confidence 443 34689999999999999998876533221 1234567899998877666655555699999999888887
Q ss_pred Eec--CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1019 SLP--TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1019 ~~~--~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
.+. |..+...++|+|. ++++.+.|..|.+||..+.....++. ...+.+.++|+++|.+|++|+..|.|..||+
T Consensus 202 ~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~--y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~ 279 (673)
T KOG4378|consen 202 HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT--YSHPLSTVAFSECGTYLCAGNSKGELIAYDM 279 (673)
T ss_pred chhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee--ecCCcceeeecCCceEEEeecCCceEEEEec
Confidence 776 8888999999987 89999999999999999888887774 3447999999999999999999999999997
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.2e-16 Score=171.36 Aligned_cols=109 Identities=15% Similarity=0.259 Sum_probs=93.3
Q ss_pred CCeEEEEEeC-CccEEEEEECCCCEEEEEECCCC-------eEEEEec-CCCCEEEEEEeC---CEEEEEEcCCeEEEEE
Q 001349 982 NPVHALQVHN-GLVYTASTSLDGAAVKMWSTSNY-------NMVGSLP-TLSEVRAMVVSS---ELVYLGCKGGTVEIWD 1049 (1094)
Q Consensus 982 ~~V~sl~fs~-~~~~las~s~Dg~~I~iwd~~~~-------~~~~~~~-~~~~v~~l~~sp---d~l~sgs~dg~I~vwd 1049 (1094)
..|+.+.|+| |...++.++.|| .|++|.+..+ .+...+. |...|+++.|+| |.+++++.|-+|++||
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg-~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDG-QINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred ceeeecccCCCChHHeeecccCc-eEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 5688888886 455667777776 9999998753 2334455 778899999998 4899999999999999
Q ss_pred CCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1050 QKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1050 ~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
+.+++....+ .+|.+.|.+++|||||+.+++.+.||+|++|+
T Consensus 707 l~~~~~~~~l-~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 707 LANAKLYSRL-VGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred hhhhhhhhee-ccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence 9999988888 69999999999999999999999999999985
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6e-16 Score=161.53 Aligned_cols=272 Identities=16% Similarity=0.201 Sum_probs=195.7
Q ss_pred ccccccccccCcEEEEeeCCCCeEEEeCCcce---------------eecccCCCcEEEEEEeC-------C--EEEEEE
Q 001349 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHRELV---------------HVDSSENGKVLSIACFR-------D--KIFSGH 830 (1094)
Q Consensus 775 ~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~~---------------~~~~~h~~~V~~l~fsp-------d--~LaSgs 830 (1094)
+-+.+.+++||..|++-+.|..+.+|++..-. .........|...+|-+ + ++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 34567899999999999999999999976100 01111346778888863 2 899999
Q ss_pred CCCeEEEEecCCCcceeEEEecccCCC---eEEEEEecCCCEEEEEeCCCcEEEEEC-CCCceEEEEecccCccceeeee
Q 001349 831 SDGTIKVWTGRGSILHLIQQIREHTKA---VTGLAILQSGEMLYSGSLDKTARVWSI-GNEEIHCVQVHDIKDQIQNLAV 906 (1094)
Q Consensus 831 ~Dg~I~vWd~~t~~~~~~~~l~~H~~~---V~sv~fspdg~~LaSgs~DgtI~vWdi-~~~~~~~~~~~~~~~~V~~v~~ 906 (1094)
.|.-|++||.-+|+.+.-...-.|.+. ..++.|+|||.+|+.|- ...|+++|+ +.|. ..++....
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr---------~c~vy~t~- 199 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGR---------DCPVYTTV- 199 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCC---------CCcchhhh-
Confidence 999999999999954444333345554 46899999999998765 578999999 5553 11111111
Q ss_pred cCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC---CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCC
Q 001349 907 SNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ---GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANP 983 (1094)
Q Consensus 907 ~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~---~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~ 983 (1094)
+ .|+ +...+-+.|++|+| +.+++|+...++-+|.-..+.+. ..+.+|.+.
T Consensus 200 ------~--~~k-------------~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl------~llggh~gG 252 (406)
T KOG2919|consen 200 ------T--KGK-------------FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL------QLLGGHGGG 252 (406)
T ss_pred ------h--ccc-------------ccccceeeeeeccCCCCcceeeecccceeeeEecCCCCce------eeecccCCC
Confidence 0 000 01123345666664 35889999999999988877777 456689999
Q ss_pred eEEEEEeCCccEEEEEECCCCEEEEEECCC-CeEEEEec-CCC-CEEEEEE--eCC--EEEEEEcCCeEEEEECCC-CcE
Q 001349 984 VHALQVHNGLVYTASTSLDGAAVKMWSTSN-YNMVGSLP-TLS-EVRAMVV--SSE--LVYLGCKGGTVEIWDQKR-QIR 1055 (1094)
Q Consensus 984 V~sl~fs~~~~~las~s~Dg~~I~iwd~~~-~~~~~~~~-~~~-~v~~l~~--spd--~l~sgs~dg~I~vwd~~t-~~~ 1055 (1094)
|+.+.|++++..+.+|+..+-.|-.||++. +.++..+. |.. .-..|-| .|+ ++++|+.||.|++||+++ |..
T Consensus 253 vThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~ 332 (406)
T KOG2919|consen 253 VTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNE 332 (406)
T ss_pred eeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCc
Confidence 999999999999999887656999999986 44555554 222 2223344 444 899999999999999998 666
Q ss_pred EEEecccCCcceEEEEEcCCCCEEEEEeCC
Q 001349 1056 IETLQTGTSGKVQCMALDDNEEFLVIGTSD 1085 (1094)
Q Consensus 1056 ~~~l~~~h~~~I~~l~~Spdg~~L~sgs~D 1085 (1094)
+..+ ..|+..++.++++|-=.+++|++..
T Consensus 333 ~sv~-~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 333 VSVT-GNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cccc-ccccccccceecCcccceeeeccCc
Confidence 7777 4788899999999988888887654
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.6e-17 Score=195.06 Aligned_cols=261 Identities=16% Similarity=0.200 Sum_probs=194.6
Q ss_pred eCCCCeEEEeCCc--ce----e-ecccCCCcEEEEEEeCC------EEEEEECCCeEEEEecCC----CcceeEEEeccc
Q 001349 792 GHDSSADFWNHRE--LV----H-VDSSENGKVLSIACFRD------KIFSGHSDGTIKVWTGRG----SILHLIQQIREH 854 (1094)
Q Consensus 792 s~dg~I~vWd~~~--~~----~-~~~~h~~~V~~l~fspd------~LaSgs~Dg~I~vWd~~t----~~~~~~~~l~~H 854 (1094)
+.+.++.+|.+.. .. . .-..-....+.++|.+. +|+.|..||.|.+||... +....+.+...|
T Consensus 36 st~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h 115 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKH 115 (1049)
T ss_pred ccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhccc
Confidence 5566777776651 11 1 11123467789999862 699999999999999754 344567788899
Q ss_pred CCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEc
Q 001349 855 TKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN 933 (1094)
Q Consensus 855 ~~~V~sv~fspd-g~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~ 933 (1094)
++.|..+.|++. +++|++|+.||.|.|||++.-+. + |++.+. .
T Consensus 116 ~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~t----------P------------~~~~~~--------------~ 159 (1049)
T KOG0307|consen 116 TGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPET----------P------------FTPGSQ--------------A 159 (1049)
T ss_pred CCceeeeeccccCCceeeccCCCCcEEEeccCCcCC----------C------------CCCCCC--------------C
Confidence 999999999995 56999999999999999987320 0 222111 1
Q ss_pred CCCCceEEEEeC---CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCcc-EEEEEECCCC--EEE
Q 001349 934 SSKYPKCLALVQ---GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLV-YTASTSLDGA--AVK 1007 (1094)
Q Consensus 934 ~~~~v~~l~~s~---~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~-~las~s~Dg~--~I~ 1007 (1094)
....|.+++|+. ..+++|+.+|.+.|||++..+.+..+..+ +-...+..+.|||+.. .++.++.|++ .|.
T Consensus 160 ~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~----~~~~~~S~l~WhP~~aTql~~As~dd~~Pviq 235 (1049)
T KOG0307|consen 160 PPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDT----PGRMHCSVLAWHPDHATQLLVASGDDSAPVIQ 235 (1049)
T ss_pred CcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccC----CCccceeeeeeCCCCceeeeeecCCCCCceeE
Confidence 234456666654 23889999999999999988766332211 1123578999998743 4444554443 899
Q ss_pred EEECCC-CeEEEEec-CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCC-EEEE
Q 001349 1008 MWSTSN-YNMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE-FLVI 1081 (1094)
Q Consensus 1008 iwd~~~-~~~~~~~~-~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~-~L~s 1081 (1094)
+||++. ..+++.+. |...|.++.|++. ++++++.|+.|.+|+.++++.+..+. ...+++..+.|.|... .+++
T Consensus 236 lWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p-~~~nW~fdv~w~pr~P~~~A~ 314 (1049)
T KOG0307|consen 236 LWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP-AQGNWCFDVQWCPRNPSVMAA 314 (1049)
T ss_pred eecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC-CCCcceeeeeecCCCcchhhh
Confidence 999985 45677775 7889999999875 89999999999999999999999995 4667999999999876 7888
Q ss_pred EeCCCcEEEEeC
Q 001349 1082 GTSDGRIQAWGL 1093 (1094)
Q Consensus 1082 gs~DG~I~iWdl 1093 (1094)
++.||.|.|+.+
T Consensus 315 asfdgkI~I~sl 326 (1049)
T KOG0307|consen 315 ASFDGKISIYSL 326 (1049)
T ss_pred heeccceeeeee
Confidence 899999999976
|
|
| >PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.6e-18 Score=145.75 Aligned_cols=72 Identities=44% Similarity=0.828 Sum_probs=62.1
Q ss_pred CCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHhCC
Q 001349 160 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNP 232 (1094)
Q Consensus 160 ~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~~~ 232 (1094)
+|++|.||||+++|.|||+++|||||||.||++|+..++..||.|++.++..++. ||..|++.|+.|+.++.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~-pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLI-PNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSE-E-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccce-ECHHHHHHHHHHHHHcc
Confidence 5789999999999999999999999999999999998777899999999999997 99999999999998864
|
Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A .... |
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.1e-17 Score=162.26 Aligned_cols=203 Identities=18% Similarity=0.233 Sum_probs=144.3
Q ss_pred eecccCCCcEEEE--EEeCCEEEEEECCCeEEEEecCCCcc-eeEEEecccCCCeEEEEEec--CCCEEEEEeCCCcEEE
Q 001349 807 HVDSSENGKVLSI--ACFRDKIFSGHSDGTIKVWTGRGSIL-HLIQQIREHTKAVTGLAILQ--SGEMLYSGSLDKTARV 881 (1094)
Q Consensus 807 ~~~~~h~~~V~~l--~fspd~LaSgs~Dg~I~vWd~~t~~~-~~~~~l~~H~~~V~sv~fsp--dg~~LaSgs~DgtI~v 881 (1094)
.+...|.+.|..+ .|....|+|++.|++|+|+.+..+.. ..+.++.||.++|+.++|.. -|.+|+|++.||.|.|
T Consensus 5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi 84 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII 84 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence 3455787777654 45667999999999999999987643 68899999999999999975 7999999999999999
Q ss_pred EECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEE
Q 001349 882 WSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEID 961 (1094)
Q Consensus 882 Wdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwD 961 (1094)
|.-.+|.....
T Consensus 85 Wke~~g~w~k~--------------------------------------------------------------------- 95 (299)
T KOG1332|consen 85 WKEENGRWTKA--------------------------------------------------------------------- 95 (299)
T ss_pred EecCCCchhhh---------------------------------------------------------------------
Confidence 99888641111
Q ss_pred CCCCceeEEeccceeecCCCCCeEEEEEeC--CccEEEEEECCCCEEEEEECCCC--eEEEEe--cCCCCEEEEEEeCC-
Q 001349 962 LATGTFATIQTGHRKLLGKANPVHALQVHN--GLVYTASTSLDGAAVKMWSTSNY--NMVGSL--PTLSEVRAMVVSSE- 1034 (1094)
Q Consensus 962 l~~~~~~~~~~~~~~~~~h~~~V~sl~fs~--~~~~las~s~Dg~~I~iwd~~~~--~~~~~~--~~~~~v~~l~~spd- 1034 (1094)
.....|...|++++|-| -+..+++++.|| .|.|.+.++. .....+ .|.-.|++++|.|.
T Consensus 96 -------------~e~~~h~~SVNsV~wapheygl~LacasSDG-~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~ 161 (299)
T KOG1332|consen 96 -------------YEHAAHSASVNSVAWAPHEYGLLLACASSDG-KVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPAS 161 (299)
T ss_pred -------------hhhhhhcccceeecccccccceEEEEeeCCC-cEEEEEEcCCCCccchhhhhccccccceeeecCcC
Confidence 11123444444554433 234444555554 4555444322 111111 15555666666542
Q ss_pred ---------------EEEEEEcCCeEEEEECCCCc--EEEEecccCCcceEEEEEcCCC----CEEEEEeCCCcEEEEeC
Q 001349 1035 ---------------LVYLGCKGGTVEIWDQKRQI--RIETLQTGTSGKVQCMALDDNE----EFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1035 ---------------~l~sgs~dg~I~vwd~~t~~--~~~~l~~~h~~~I~~l~~Spdg----~~L~sgs~DG~I~iWdl 1093 (1094)
.+++|+.|+.|+||+..++. .-.++ .+|.+.|..++|.|.- .+|++++.||+|.||..
T Consensus 162 ~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l-~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~ 240 (299)
T KOG1332|consen 162 APGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTL-EGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTK 240 (299)
T ss_pred CCccccccCcccccceeeccCCccceeeeecCCcchhhhhhh-hhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEe
Confidence 49999999999999998763 33345 6999999999999964 58999999999999963
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.8e-16 Score=162.19 Aligned_cols=268 Identities=16% Similarity=0.265 Sum_probs=188.1
Q ss_pred CcEEEEeeCCCCeEEEeCCc-----ceee--cccCCCcEEEEEEeC-----C-EEEEEECCCeEEEEecCCCcceeEEEe
Q 001349 785 MVKVLSNGHDSSADFWNHRE-----LVHV--DSSENGKVLSIACFR-----D-KIFSGHSDGTIKVWTGRGSILHLIQQI 851 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~~-----~~~~--~~~h~~~V~~l~fsp-----d-~LaSgs~Dg~I~vWd~~t~~~~~~~~l 851 (1094)
...+++.|. +.+.+|+... ..+. ...|......++|+- + ++|.|+.-|.|+|.|+.++ ++...+
T Consensus 55 ~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~--~~~~~~ 131 (385)
T KOG1034|consen 55 PQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG--QCSKNY 131 (385)
T ss_pred CceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh--hhccce
Confidence 345555554 4566777651 1222 224777888889873 3 8999999999999999999 789999
Q ss_pred cccCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCceEEEEe--cccCccceeeeecCceEEEeeCCCeEEEEEeCCe
Q 001349 852 REHTKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEEIHCVQV--HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 928 (1094)
Q Consensus 852 ~~H~~~V~sv~fspd-g~~LaSgs~DgtI~vWdi~~~~~~~~~~--~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~ 928 (1094)
.+|...|+.+.|+|+ .++++++|.|.+||+|++.++....+.. ..|.+.|.++. |+++|..
T Consensus 132 ~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD-------~~~~gd~--------- 195 (385)
T KOG1034|consen 132 RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVD-------FSLDGDR--------- 195 (385)
T ss_pred eccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEE-------EcCCCCe---------
Confidence 999999999999994 6899999999999999999985333332 24778888888 8888875
Q ss_pred EEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeE----------------------EeccceeecCCCCCeEE
Q 001349 929 TKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFAT----------------------IQTGHRKLLGKANPVHA 986 (1094)
Q Consensus 929 i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~----------------------~~~~~~~~~~h~~~V~s 986 (1094)
+++++.|.++++|++...+... .++...+-..|...|.|
T Consensus 196 -------------------i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDC 256 (385)
T KOG1034|consen 196 -------------------IASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDC 256 (385)
T ss_pred -------------------eeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHH
Confidence 6666777777777765322110 00100122346677777
Q ss_pred EEEeCCccEEEEEECCCCEEEEEECC-CCe-------------EEEEec-CCCCEEEEEEeCC----EEEEEEcCCeEEE
Q 001349 987 LQVHNGLVYTASTSLDGAAVKMWSTS-NYN-------------MVGSLP-TLSEVRAMVVSSE----LVYLGCKGGTVEI 1047 (1094)
Q Consensus 987 l~fs~~~~~las~s~Dg~~I~iwd~~-~~~-------------~~~~~~-~~~~v~~l~~spd----~l~sgs~dg~I~v 1047 (1094)
+.|.. .++++-+-++ .|..|... -++ ....+. ....++-+.|.-| .++.|...|.|++
T Consensus 257 vrw~g--d~ilSkscen-aI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~v 333 (385)
T KOG1034|consen 257 VRWFG--DFILSKSCEN-AIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYV 333 (385)
T ss_pred HHHHh--hheeecccCc-eEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEE
Confidence 77765 4556666665 89999872 111 122233 2345666666554 7999999999999
Q ss_pred EECCCCcEE--EEec-ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1048 WDQKRQIRI--ETLQ-TGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1048 wd~~t~~~~--~~l~-~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
||++...+. .++. ......|...+||.||.+|+..++||+|.-||-
T Consensus 334 wdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 334 WDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred EECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 999876542 2221 122347999999999999999999999999983
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.7e-16 Score=170.20 Aligned_cols=278 Identities=12% Similarity=0.164 Sum_probs=209.4
Q ss_pred HHHHHHHhhhcccccccccc--CcEEEEeeCCCCeEEEeCC----cceeecccCCCcEEEEEEeCC---EEEEEECCCeE
Q 001349 765 MKDIMKGLRELRKYSPLAFE--MVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTI 835 (1094)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~d--~~~l~s~s~dg~I~vWd~~----~~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I 835 (1094)
++|+...+........++|. -..++++|.||++++|.++ ..++.+.-...+|.+..|.|+ .+++++...-+
T Consensus 203 lkDaNa~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ 282 (514)
T KOG2055|consen 203 LKDANAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYL 282 (514)
T ss_pred ecccccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEE
Confidence 34444444444445555554 4489999999999999987 344455556789999999996 89999999999
Q ss_pred EEEecCCCcceeEEEecccC-CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEe
Q 001349 836 KVWTGRGSILHLIQQIREHT-KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFI 914 (1094)
Q Consensus 836 ~vWd~~t~~~~~~~~l~~H~-~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fs 914 (1094)
+.||+.+.+...+....++. ..+....+++++++|+..|..|.|.+-...+++ .+......+.|..+. |+
T Consensus 283 ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e--li~s~KieG~v~~~~-------fs 353 (514)
T KOG2055|consen 283 YSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE--LITSFKIEGVVSDFT-------FS 353 (514)
T ss_pred EEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhh--hhheeeeccEEeeEE-------Ee
Confidence 99999998777777777776 356778899999999999999999999998875 333344466677766 99
Q ss_pred eCCCeEEEEEeCCeEEEEcCCCC-----------c----eEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecC
Q 001349 915 PQGAGIKVHLRNGKTKLLNSSKY-----------P----KCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLG 979 (1094)
Q Consensus 915 pdg~~l~~~~~~g~i~l~~~~~~-----------v----~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~ 979 (1094)
.||+.+.+.+.+|.+.+|+.... + .|++.++..+++|+..|.|.|||..+-..-..-.+...+..
T Consensus 354 Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN 433 (514)
T KOG2055|consen 354 SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN 433 (514)
T ss_pred cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhh
Confidence 99999999999999999986432 2 22223456799999999999999654322111111134444
Q ss_pred CCCCeEEEEEeCCccEEEEEECC-CCEEEEEECCCCeEEEEecC----CCCEEEEEEeCC--EEEEEEcCCeEEEEECC
Q 001349 980 KANPVHALQVHNGLVYTASTSLD-GAAVKMWSTSNYNMVGSLPT----LSEVRAMVVSSE--LVYLGCKGGTVEIWDQK 1051 (1094)
Q Consensus 980 h~~~V~sl~fs~~~~~las~s~D-g~~I~iwd~~~~~~~~~~~~----~~~v~~l~~spd--~l~sgs~dg~I~vwd~~ 1051 (1094)
-...|+++.|+++..+++.+|.. ...+++-.+.+......++. -+.|+|++|||. +++.|..+|.|.+|.+.
T Consensus 434 Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 434 LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 55789999999998887776642 13899998887776666662 366999999997 89999999999999864
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-16 Score=167.14 Aligned_cols=249 Identities=14% Similarity=0.193 Sum_probs=179.1
Q ss_pred cEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEe---cccCCC
Q 001349 786 VKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQI---REHTKA 857 (1094)
Q Consensus 786 ~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l---~~H~~~ 857 (1094)
-++|.||.-|.|+|.|+. ++...+.+|.+.|+.+.|.|+ +++++|.|.+|++||+++. .++..+ .+|.+.
T Consensus 106 p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~--~Cv~VfGG~egHrde 183 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD--VCVAVFGGVEGHRDE 183 (385)
T ss_pred eeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC--eEEEEecccccccCc
Confidence 378888999999999987 567788999999999999984 9999999999999999999 777766 579999
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEE----c
Q 001349 858 VTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLL----N 933 (1094)
Q Consensus 858 V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~----~ 933 (1094)
|.+++|+++|.+|+|+|.|.++++|++...+... .+... ..|+|++...-.-...-....| .
T Consensus 184 VLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~--------~lE~s------~~~~~~~t~~pfpt~~~~fp~fst~di 249 (385)
T KOG1034|consen 184 VLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKN--------KLELS------ITYSPNKTTRPFPTPKTHFPDFSTTDI 249 (385)
T ss_pred EEEEEEcCCCCeeeccCCcceEEEEecChhHHhh--------hhhhh------cccCCCCccCcCCcccccccccccccc
Confidence 9999999999999999999999999998643110 00000 0144444321110000111111 2
Q ss_pred CCCCceEEEEeCCEEEEEEcCCeEEEEECC-CCceeEEe-cc------ceeecCCCCCeEEEEE--eCCccEEEEEECCC
Q 001349 934 SSKYPKCLALVQGKVYCGCQDGAIQEIDLA-TGTFATIQ-TG------HRKLLGKANPVHALQV--HNGLVYTASTSLDG 1003 (1094)
Q Consensus 934 ~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~-~~~~~~~~-~~------~~~~~~h~~~V~sl~f--s~~~~~las~s~Dg 1003 (1094)
|..+|.|+.|..+.+++-+-++.|..|... -++.+... ++ ...+.-....|.-+.| ++-...++.+...|
T Consensus 250 HrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g 329 (385)
T KOG1034|consen 250 HRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSG 329 (385)
T ss_pred ccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCC
Confidence 567899999999999999999999999872 22211100 00 0112222334555555 57788888888776
Q ss_pred CEEEEEECCCCeEE--EEec---CCCCEEEEEEeCC--EEEEEEcCCeEEEEECC
Q 001349 1004 AAVKMWSTSNYNMV--GSLP---TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQK 1051 (1094)
Q Consensus 1004 ~~I~iwd~~~~~~~--~~~~---~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~ 1051 (1094)
.|.+||++...+. .++. ....|...+|+.| .++..++|++|.-||.-
T Consensus 330 -~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 330 -KVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred -cEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 9999999976653 2333 3567899999988 78889999999999864
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.4e-16 Score=162.44 Aligned_cols=269 Identities=16% Similarity=0.206 Sum_probs=191.8
Q ss_pred cEEEEeeCCCCeEEEeCCc--ceeecccCCCcEEEEEEeC----CEEEEEECCCeEEEEecCCCcceeEEEecccC-CCe
Q 001349 786 VKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFR----DKIFSGHSDGTIKVWTGRGSILHLIQQIREHT-KAV 858 (1094)
Q Consensus 786 ~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~fsp----d~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~-~~V 858 (1094)
..++++-..|.|++||..+ ....+.+|...+..+.|.. +.+.+++.||+|++||+++........+..|. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 6789999999999999985 6778889999999999975 49999999999999999987555666666776 456
Q ss_pred EEEEEecCCCEEEEEeC----CCcEEEEECCCCce-EEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEc
Q 001349 859 TGLAILQSGEMLYSGSL----DKTARVWSIGNEEI-HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN 933 (1094)
Q Consensus 859 ~sv~fspdg~~LaSgs~----DgtI~vWdi~~~~~-~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~ 933 (1094)
.+++.+-.++.+++|+. |-.|.+||++..+. .......|.+.|+++. |.|..
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lr-------FHP~~---------------- 177 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLR-------FHPSD---------------- 177 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEE-------ecCCC----------------
Confidence 77777767888888754 67899999998642 1122223455555555 54443
Q ss_pred CCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCc-cEEEEEECCCCEEEEEECC
Q 001349 934 SSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL-VYTASTSLDGAAVKMWSTS 1012 (1094)
Q Consensus 934 ~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~-~~las~s~Dg~~I~iwd~~ 1012 (1094)
|+.+++|+.||-|.+||+.....-. .-.....|...|..+.|+.++ ..+.+-+..+ +..+|++.
T Consensus 178 -----------pnlLlSGSvDGLvnlfD~~~d~EeD---aL~~viN~~sSI~~igw~~~~ykrI~clTH~E-tf~~~ele 242 (376)
T KOG1188|consen 178 -----------PNLLLSGSVDGLVNLFDTKKDNEED---ALLHVINHGSSIHLIGWLSKKYKRIMCLTHME-TFAIYELE 242 (376)
T ss_pred -----------CCeEEeecccceEEeeecCCCcchh---hHHHhhcccceeeeeeeecCCcceEEEEEccC-ceeEEEcc
Confidence 3569999999999999998653221 112345677889999998655 3345555565 89999999
Q ss_pred CCeEEEEecCC-------------CCEEEEEEeCC---EEEE-EEcCCeEEEEECC------CCcEEEEecccCCcceEE
Q 001349 1013 NYNMVGSLPTL-------------SEVRAMVVSSE---LVYL-GCKGGTVEIWDQK------RQIRIETLQTGTSGKVQC 1069 (1094)
Q Consensus 1013 ~~~~~~~~~~~-------------~~v~~l~~spd---~l~s-gs~dg~I~vwd~~------t~~~~~~l~~~h~~~I~~ 1069 (1094)
.+.+...+... ..+... .+|. ..+. |+.-|...++-+. ..+.+..+..+|...|.+
T Consensus 243 ~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~ 321 (376)
T KOG1188|consen 243 DGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRD 321 (376)
T ss_pred CCChhhcccCccchhhhHHhhhhhhheeec-ccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHH
Confidence 88866555422 111111 1222 3333 4435555555332 345666776678889999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1070 MALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1070 l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
+.|...+.++.|||.||.+.+|..
T Consensus 322 i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 322 ILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred HhhhcccceeeccCCCceEEEEec
Confidence 999999999999999999999973
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.7e-16 Score=175.40 Aligned_cols=258 Identities=17% Similarity=0.263 Sum_probs=183.2
Q ss_pred EEeCCcceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecC------CCcceeEEEecccCCCeEEEEEecCCCEE
Q 001349 799 FWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR------GSILHLIQQIREHTKAVTGLAILQSGEML 870 (1094)
Q Consensus 799 vWd~~~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~------t~~~~~~~~l~~H~~~V~sv~fspdg~~L 870 (1094)
-|+++- ++..|.+.|+.+.|.+. .|++++.||++++|++. ....+++.+|.+|.++|.|+++.+++..+
T Consensus 283 ~w~ik~---tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ 359 (577)
T KOG0642|consen 283 KWNIKF---TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHC 359 (577)
T ss_pred ecceee---eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEE
Confidence 365542 66789999999999985 99999999999999993 23457899999999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC--CEE
Q 001349 871 YSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ--GKV 948 (1094)
Q Consensus 871 aSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~--~~l 948 (1094)
++||-||+|+.|++.... .|+..+= .....-.+..|...++.++++. ++|
T Consensus 360 ysgg~Dg~I~~w~~p~n~-------------------------dp~ds~d---p~vl~~~l~Ghtdavw~l~~s~~~~~L 411 (577)
T KOG0642|consen 360 YSGGIDGTIRCWNLPPNQ-------------------------DPDDSYD---PSVLSGTLLGHTDAVWLLALSSTKDRL 411 (577)
T ss_pred EeeccCceeeeeccCCCC-------------------------CcccccC---cchhccceeccccceeeeeecccccce
Confidence 999999999999886421 1111000 0000112334566677777764 569
Q ss_pred EEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecC------
Q 001349 949 YCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT------ 1022 (1094)
Q Consensus 949 ~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~------ 1022 (1094)
++++.||+++.|+...... .++... ..| +.-.++.+-.........+..-+.-.+++.........+..
T Consensus 412 lscs~DgTvr~w~~~~~~~-~~f~~~---~e~-g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~ 486 (577)
T KOG0642|consen 412 LSCSSDGTVRLWEPTEESP-CTFGEP---KEH-GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGP 486 (577)
T ss_pred eeecCCceEEeeccCCcCc-cccCCc---ccc-CCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcc
Confidence 9999999999999887665 222211 112 23345665433322222211111233344444444444431
Q ss_pred --CCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1023 --LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1023 --~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
...+..+.++|. +.+++..|+.|+++|..++.+++.. ..|...++++++.|+|.+|++|+.||.|++|.+
T Consensus 487 ~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~-~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 487 RRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM-VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred cccCccceEEecCCCCeeEecccCCceecccccccccchhe-eeccceecceeecCCCceEEeecCCceeehhhc
Confidence 134566777776 8899999999999999999999988 589999999999999999999999999999986
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-15 Score=156.94 Aligned_cols=237 Identities=11% Similarity=0.188 Sum_probs=164.7
Q ss_pred EEEEEEeC--CEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEE
Q 001349 816 VLSIACFR--DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQ 893 (1094)
Q Consensus 816 V~~l~fsp--d~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~ 893 (1094)
-.|+.|++ ++||+|+.||.|.|||+.|. ..-+.+.+|..+|++++||+||+.|+|+|.|..|++||+..|. +..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~--~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs--~l~ 101 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF--RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS--PLK 101 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcccc--chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC--cee
Confidence 68999998 49999999999999999998 5677889999999999999999999999999999999999985 455
Q ss_pred ecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEecc
Q 001349 894 VHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTG 973 (1094)
Q Consensus 894 ~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~ 973 (1094)
.....++|.... |.|.....++.. -.+..-.+.++..+.... ++.
T Consensus 102 rirf~spv~~~q-------~hp~k~n~~va~---------------------------~~~~sp~vi~~s~~~h~~-Lp~ 146 (405)
T KOG1273|consen 102 RIRFDSPVWGAQ-------WHPRKRNKCVAT---------------------------IMEESPVVIDFSDPKHSV-LPK 146 (405)
T ss_pred EEEccCccceee-------eccccCCeEEEE---------------------------EecCCcEEEEecCCceee-ccC
Confidence 555677888777 666544321111 111111111111111100 000
Q ss_pred ceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecC--CCCEEEEEEeCC--EEEEEEcCCeEEEEE
Q 001349 974 HRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT--LSEVRAMVVSSE--LVYLGCKGGTVEIWD 1049 (1094)
Q Consensus 974 ~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~--~~~v~~l~~spd--~l~sgs~dg~I~vwd 1049 (1094)
..-..-+....+..|++.|.++.+|...| .+.++|..+.+++..++- ...|..+.++.. ++++-+.|..||.|+
T Consensus 147 -d~d~dln~sas~~~fdr~g~yIitGtsKG-kllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye 224 (405)
T KOG1273|consen 147 -DDDGDLNSSASHGVFDRRGKYIITGTSKG-KLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYE 224 (405)
T ss_pred -CCccccccccccccccCCCCEEEEecCcc-eEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEe
Confidence 00000001122236789999999998887 999999999999998883 367888888765 899999999999999
Q ss_pred CCCC-------c--EEEEecc-cCCcceEEEEEcCCCCEEEEEeC-CCcEEEEeC
Q 001349 1050 QKRQ-------I--RIETLQT-GTSGKVQCMALDDNEEFLVIGTS-DGRIQAWGL 1093 (1094)
Q Consensus 1050 ~~t~-------~--~~~~l~~-~h~~~I~~l~~Spdg~~L~sgs~-DG~I~iWdl 1093 (1094)
+..- . +.+.++. -....-.+++||.||.|++.|+. ...++||.-
T Consensus 225 ~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~ 279 (405)
T KOG1273|consen 225 ISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEK 279 (405)
T ss_pred hhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEec
Confidence 7621 1 1112210 01224467889999999988774 456999963
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.6e-15 Score=156.99 Aligned_cols=289 Identities=12% Similarity=0.103 Sum_probs=205.5
Q ss_pred HHHHHHHHhhhccccccccccCcEEEEeeCCCCeEEEeCCc--------ceeec-ccCCCcEEEEEEeCC--EEEEEECC
Q 001349 764 HMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE--------LVHVD-SSENGKVLSIACFRD--KIFSGHSD 832 (1094)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~--------~~~~~-~~h~~~V~~l~fspd--~LaSgs~D 832 (1094)
|.+.-++.|...++...|+-++.++++||.|..+++|++.+ .+.+. ..|...|.|++|.-. .+++|..+
T Consensus 47 ~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 47 FCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 33444566777778888888999999999999999999862 23333 345699999999863 99999999
Q ss_pred CeEEEEecCCCcceeEEEecccC---CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCc
Q 001349 833 GTIKVWTGRGSILHLIQQIREHT---KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNS 909 (1094)
Q Consensus 833 g~I~vWd~~t~~~~~~~~l~~H~---~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~ 909 (1094)
|+|..-|+.+. +.+..+. |. +.|..+..+|..+.|++.+.+|.|.+||++.... ++.-
T Consensus 127 ~~VI~HDiEt~--qsi~V~~-~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~----------~~~~------ 187 (609)
T KOG4227|consen 127 GTVIKHDIETK--QSIYVAN-ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN----------PISL------ 187 (609)
T ss_pred ceeEeeecccc--eeeeeec-ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCC----------CCce------
Confidence 99999999998 5555543 44 4899999999999999999999999999987530 1110
Q ss_pred eEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEe---CCEEEEEEcCCeEEEEECCCCcee-EEeccceeecCCCCCeE
Q 001349 910 ILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV---QGKVYCGCQDGAIQEIDLATGTFA-TIQTGHRKLLGKANPVH 985 (1094)
Q Consensus 910 ~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s---~~~l~sgs~Dg~I~iwDl~~~~~~-~~~~~~~~~~~h~~~V~ 985 (1094)
|.|.. ..+....+.|+ |..|++.+..+.+-+||++..... ..+.....+......-.
T Consensus 188 ---~~~AN----------------~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M 248 (609)
T KOG4227|consen 188 ---VLPAN----------------SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWM 248 (609)
T ss_pred ---eeecC----------------CCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhh
Confidence 11100 01112233333 235888889999999999865432 11111112222222346
Q ss_pred EEEEeCCccEEEEEECCCCEEEEEECCCCe-EEEEecCC-------CCEEEEEEeCC-EEEEEEcCCeEEEEECCC----
Q 001349 986 ALQVHNGLVYTASTSLDGAAVKMWSTSNYN-MVGSLPTL-------SEVRAMVVSSE-LVYLGCKGGTVEIWDQKR---- 1052 (1094)
Q Consensus 986 sl~fs~~~~~las~s~Dg~~I~iwd~~~~~-~~~~~~~~-------~~v~~l~~spd-~l~sgs~dg~I~vwd~~t---- 1052 (1094)
++.|+|+|..+.+.-.. ..-.+||+.+.. ++..+.|. ..+.+++|-.| .+++|+.+-.|++|.+..
T Consensus 249 ~~~~~~~G~Q~msiRR~-~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds 327 (609)
T KOG4227|consen 249 GSLWSPSGNQFMSIRRG-KCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDS 327 (609)
T ss_pred heeeCCCCCeehhhhcc-CCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccc
Confidence 77899988887776443 466788887743 44455542 24667888888 699999999999998642
Q ss_pred ------C-------------cEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1053 ------Q-------------IRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1053 ------~-------------~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
| +.+..+ .||...++.+.|+|...+|++.+..+.++||.
T Consensus 328 ~G~~~IG~~~~~~~~~~~i~~~~~VL-rGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 328 YGFTQIGHDEEEMPSEIFIEKELTVL-RGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred cCccccCcchhhCchhheecceeEEE-ecccccccceeecCCcceEeccchhhheeccc
Confidence 1 123445 58999999999999999999999999999995
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.3e-16 Score=187.77 Aligned_cols=226 Identities=17% Similarity=0.236 Sum_probs=175.2
Q ss_pred cEEEEeeCCCCeEEEeCCc--------ceeecccCCCcEEEEEEeC---CEEEEEECCCeEEEEecCCCcceeEEEe--c
Q 001349 786 VKVLSNGHDSSADFWNHRE--------LVHVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWTGRGSILHLIQQI--R 852 (1094)
Q Consensus 786 ~~l~s~s~dg~I~vWd~~~--------~~~~~~~h~~~V~~l~fsp---d~LaSgs~Dg~I~vWd~~t~~~~~~~~l--~ 852 (1094)
..|+.|..||.|.+||... .+.....|+|.|..+.|++ ++||+|+.||.|.|||+... ..-.++ .
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~--~tP~~~~~~ 158 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKP--ETPFTPGSQ 158 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCc--CCCCCCCCC
Confidence 3588999999999999863 3455678999999999998 39999999999999999875 222222 2
Q ss_pred ccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCceEEEEecccCc--cceeeeecCceEEEeeCCCeEEEEEeCCeE
Q 001349 853 EHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKD--QIQNLAVSNSILCFIPQGAGIKVHLRNGKT 929 (1094)
Q Consensus 853 ~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~--~V~~v~~~~~~~~fspdg~~l~~~~~~g~i 929 (1094)
.-.+.|.+++|+. ....|++++.+|++.|||++..+ ..+....+.. .+..+ .|+|++..
T Consensus 159 ~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~-pii~ls~~~~~~~~S~l-------~WhP~~aT---------- 220 (1049)
T KOG0307|consen 159 APPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK-PIIKLSDTPGRMHCSVL-------AWHPDHAT---------- 220 (1049)
T ss_pred CCcccceEeccchhhhHHhhccCCCCCceeccccCCC-cccccccCCCccceeee-------eeCCCCce----------
Confidence 2457899999997 46789999999999999999853 2222222222 12222 36665543
Q ss_pred EEEcCCCCceEEEEeCCEEEEEEcCC---eEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCc-cEEEEEECCCCE
Q 001349 930 KLLNSSKYPKCLALVQGKVYCGCQDG---AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL-VYTASTSLDGAA 1005 (1094)
Q Consensus 930 ~l~~~~~~v~~l~~s~~~l~sgs~Dg---~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~-~~las~s~Dg~~ 1005 (1094)
++++++.|. .|.+||++.-.... +.+.+|...|.++.|++.+ .++++++.|+ .
T Consensus 221 -----------------ql~~As~dd~~PviqlWDlR~assP~-----k~~~~H~~GilslsWc~~D~~lllSsgkD~-~ 277 (1049)
T KOG0307|consen 221 -----------------QLLVASGDDSAPVIQLWDLRFASSPL-----KILEGHQRGILSLSWCPQDPRLLLSSGKDN-R 277 (1049)
T ss_pred -----------------eeeeecCCCCCceeEeecccccCCch-----hhhcccccceeeeccCCCCchhhhcccCCC-C
Confidence 466666554 69999998755432 5667999999999998654 8899999997 9
Q ss_pred EEEEECCCCeEEEEec-CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCc
Q 001349 1006 VKMWSTSNYNMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQI 1054 (1094)
Q Consensus 1006 I~iwd~~~~~~~~~~~-~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~ 1054 (1094)
|.+|+..+++.+..+. .+.++..+.|+|. .+++++.||.|.||.+.+..
T Consensus 278 ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 278 IICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999999999999998 6788999999986 78999999999999987644
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.1e-15 Score=172.44 Aligned_cols=272 Identities=17% Similarity=0.187 Sum_probs=188.2
Q ss_pred CCeEEEeCCcce--eecccCCCcEEEEEEeC---CEEEEEECCCeEEEEecCCCcceeEE----EecccCCCeEEEEEec
Q 001349 795 SSADFWNHRELV--HVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWTGRGSILHLIQ----QIREHTKAVTGLAILQ 865 (1094)
Q Consensus 795 g~I~vWd~~~~~--~~~~~h~~~V~~l~fsp---d~LaSgs~Dg~I~vWd~~t~~~~~~~----~l~~H~~~V~sv~fsp 865 (1094)
+.+.+|+++... .....-...|+|+.|+| ++++.|+++|.|.+||+..+...... ....|..+|+.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 378899998431 22223467899999987 49999999999999999876432121 2246889999999977
Q ss_pred CC--CEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEE
Q 001349 866 SG--EMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLAL 943 (1094)
Q Consensus 866 dg--~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~ 943 (1094)
+. .-++++|.||.|..|+++.-.. ............ .+. -......+.+++|
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~-P~e~~~~~~~~~-------------~~~------------~~~~~~~~t~~~F 355 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSL-PVEGLLLESKKH-------------KGQ------------QSSKAVGATSLKF 355 (555)
T ss_pred cCCCCceEEEecCCcEeeeecccccc-chhhcccccccc-------------ccc------------ccccccceeeEee
Confidence 43 4599999999999998765321 000000000000 000 0011233556666
Q ss_pred e---CCEEEEEEcCCeEEEEECCCCcee--EEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECC-CCeEE
Q 001349 944 V---QGKVYCGCQDGAIQEIDLATGTFA--TIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS-NYNMV 1017 (1094)
Q Consensus 944 s---~~~l~sgs~Dg~I~iwDl~~~~~~--~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~-~~~~~ 1017 (1094)
. +..+++|+.+|.|..-+-...+.. ..+.++..+..|.++|+++.++|=+..+...+.|. +++||... ...++
T Consensus 356 ~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW-~vriWs~~~~~~Pl 434 (555)
T KOG1587|consen 356 EPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDW-TVRIWSEDVIASPL 434 (555)
T ss_pred ccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccc-eeEeccccCCCCcc
Confidence 5 467999999999887443322211 23444456778899999999998655444444465 99999987 66666
Q ss_pred EEec-CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCC--cEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001349 1018 GSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQ--IRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1018 ~~~~-~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~--~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iW 1091 (1094)
..+. +...+++++|||. .++++..||.|.+||+... .++.+.+ -+....+.+.|+++|+.|++|+..|++++|
T Consensus 435 ~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~-~~~~~l~~~~~s~~g~~lavGd~~G~~~~~ 513 (555)
T KOG1587|consen 435 LSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQK-VCSPALTRVRWSPNGKLLAVGDANGTTHIL 513 (555)
T ss_pred hhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccc-ccccccceeecCCCCcEEEEecCCCcEEEE
Confidence 6665 5666999999997 7899999999999998643 3455553 235577888999999999999999999999
Q ss_pred eCC
Q 001349 1092 GLS 1094 (1094)
Q Consensus 1092 dls 1094 (1094)
++.
T Consensus 514 ~l~ 516 (555)
T KOG1587|consen 514 KLS 516 (555)
T ss_pred EcC
Confidence 983
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.8e-13 Score=155.45 Aligned_cols=296 Identities=26% Similarity=0.430 Sum_probs=220.6
Q ss_pred cccCc-EEEEeeC-CCCeEEEeCC---cceeecccCCCcEEEEEEeCC--EEEEEEC-CCeEEEEecCCCcceeEEEecc
Q 001349 782 AFEMV-KVLSNGH-DSSADFWNHR---ELVHVDSSENGKVLSIACFRD--KIFSGHS-DGTIKVWTGRGSILHLIQQIRE 853 (1094)
Q Consensus 782 ~~d~~-~l~s~s~-dg~I~vWd~~---~~~~~~~~h~~~V~~l~fspd--~LaSgs~-Dg~I~vWd~~t~~~~~~~~l~~ 853 (1094)
..++. .++..+. |+.+.+|+.. ........|...|.+++|+|+ .+++++. |+.+++|+..++ ..+..+.+
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 196 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG--KPLSTLAG 196 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC--ceEEeecc
Confidence 34454 4454444 9999999997 456778899999999999996 6888875 999999999986 67888888
Q ss_pred cCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEE
Q 001349 854 HTKAVTGLAILQSGE-MLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLL 932 (1094)
Q Consensus 854 H~~~V~sv~fspdg~-~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~ 932 (1094)
|...|.+++|+|++. .+++++.|++|++||...+.........+.... .. .|++++..++....++.+++|
T Consensus 197 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~d~~~~~~ 268 (466)
T COG2319 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VS-------SFSPDGSLLASGSSDGTIRLW 268 (466)
T ss_pred CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eE-------eECCCCCEEEEecCCCcEEEe
Confidence 999999999999998 666669999999998886542221122222221 11 388999888888888888888
Q ss_pred cC-------------CCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEE
Q 001349 933 NS-------------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTA 997 (1094)
Q Consensus 933 ~~-------------~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~la 997 (1094)
+. ...+.++.+.+ ..+++++.|+.+.+||..+........ ...|...+..+.|.+++..+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 344 (466)
T COG2319 269 DLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT----LKGHEGPVSSLSFSPDGSLLV 344 (466)
T ss_pred eecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee----ecccCCceEEEEECCCCCEEE
Confidence 64 34667777776 567778999999999998887663322 246777799999933323444
Q ss_pred EE-ECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcC
Q 001349 998 ST-SLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDD 1074 (1094)
Q Consensus 998 s~-s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Sp 1074 (1094)
.+ ..| +.+.+|+...............+..+.++++ ....+..++.+.+|+........... .+...+....+++
T Consensus 345 ~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 422 (466)
T COG2319 345 SGGSDD-GTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLD-GHTSRVTSLDFSP 422 (466)
T ss_pred EeecCC-CcEEeeecCCCceeEEecCCceEEEEEECCCCCEEEEecCCCceEEEecccCeeeeecc-CCCCcEEEEEECC
Confidence 44 556 5899999988773333333333777777773 22236789999999999988877774 2226899999999
Q ss_pred CCCEEEEEeCCCcEEEEeC
Q 001349 1075 NEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1075 dg~~L~sgs~DG~I~iWdl 1093 (1094)
++..+++++.++++++|++
T Consensus 423 ~~~~~~~~~~~~~~~~~~~ 441 (466)
T COG2319 423 DGKSLASGSSDNTIRLWDL 441 (466)
T ss_pred CCcEEEEecCCCcEEEEec
Confidence 9999999999999999986
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.4e-15 Score=169.50 Aligned_cols=238 Identities=18% Similarity=0.224 Sum_probs=160.6
Q ss_pred cCcEEEEeeCCCCeEEEeCCc----ceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCc------------
Q 001349 784 EMVKVLSNGHDSSADFWNHRE----LVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSI------------ 844 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~~----~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~------------ 844 (1094)
-...|++++.|.++++||+.+ ....+.||.+.|.+++|.+. .|++|+.||.|.|||+.-..
T Consensus 111 ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~ 190 (720)
T KOG0321|consen 111 GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIY 190 (720)
T ss_pred CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhh
Confidence 345899999999999999982 33458899999999999984 99999999999999986321
Q ss_pred -------------ceeEEEecccCCCeEE---EEEecCCCEEEEEeC-CCcEEEEECCCCceEEEEecccCccceeeeec
Q 001349 845 -------------LHLIQQIREHTKAVTG---LAILQSGEMLYSGSL-DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVS 907 (1094)
Q Consensus 845 -------------~~~~~~l~~H~~~V~s---v~fspdg~~LaSgs~-DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~ 907 (1094)
.+.+.....|.+.|.+ +.+..|...|||+|. |++|+|||++......... ...+..+.
T Consensus 191 ~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~e---p~~~~~~~-- 265 (720)
T KOG0321|consen 191 GRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQE---PRGSDKYP-- 265 (720)
T ss_pred ccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccC---CCcccCcc--
Confidence 0112223345555665 666679999999998 9999999999853111100 11111110
Q ss_pred CceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEe--CCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeE
Q 001349 908 NSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV--QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVH 985 (1094)
Q Consensus 908 ~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s--~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~ 985 (1094)
...+ ..-.+.++..+ +.++++.|.|++|++||+.+-..... ..+.++...-.
T Consensus 266 -------t~sk---------------rs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~----~~~sg~~~~sf 319 (720)
T KOG0321|consen 266 -------THSK---------------RSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPV----AEFSGKLNSSF 319 (720)
T ss_pred -------Cccc---------------ceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCch----hhccCccccee
Confidence 0000 00112222222 35688888899999999987543211 22223322212
Q ss_pred EE--EEeCCccEEEEEECCCCEEEEEECCCCeEEEE-ec-CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCC
Q 001349 986 AL--QVHNGLVYTASTSLDGAAVKMWSTSNYNMVGS-LP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQ 1053 (1094)
Q Consensus 986 sl--~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~-~~-~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~ 1053 (1094)
.+ ..+|++.++++++.|+ ...+|.+.+.+.--. +. |...|++++|.|. -++++++|.+++||++..+
T Consensus 320 ~vks~lSpd~~~l~SgSsd~-~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 320 YVKSELSPDDCSLLSGSSDE-QAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eeeeecCCCCceEeccCCCc-ceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 22 2369999999999997 999999987553322 22 6788999999886 5888899999999998654
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.5e-16 Score=179.15 Aligned_cols=270 Identities=17% Similarity=0.234 Sum_probs=197.9
Q ss_pred HHhhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcc
Q 001349 770 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSIL 845 (1094)
Q Consensus 770 ~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~ 845 (1094)
.+|+..+-...+.-.|.++++|+.|..++||... .+.....||.+.|+.++.+.+ ++++++.|..|++|.+.++
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~-- 264 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG-- 264 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC--
Confidence 4555555556677789999999999999999977 567788999999999999876 8999999999999999999
Q ss_pred eeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEe
Q 001349 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR 925 (1094)
Q Consensus 846 ~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~ 925 (1094)
.++..+.+|++.|++++|+|-. +.+.||++++||.+-. .....+ .+ ..+++.
T Consensus 265 ~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~---~~~y~p--rp------------~~~~~~------- 316 (1113)
T KOG0644|consen 265 APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLE---PRIYVP--RP------------LKFTEK------- 316 (1113)
T ss_pred chHHHHhccccceeeeccCccc----cCCCCCceEecccccc---ccccCC--CC------------CCcccc-------
Confidence 7889999999999999999954 7889999999999821 111110 00 001111
Q ss_pred CCeEEEEcCCCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCc-cEEEEEECC
Q 001349 926 NGKTKLLNSSKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL-VYTASTSLD 1002 (1094)
Q Consensus 926 ~g~i~l~~~~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~-~~las~s~D 1002 (1094)
..+.++.+.. ..+.+|+.|+.-..|.+..-. .+...+.-+.++.+. .+.++.-.+
T Consensus 317 ----------~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~------------~~~~~lif~t~ssd~~~~~~~ar~~ 374 (1113)
T KOG0644|consen 317 ----------DLVDSILFENNGDRFLTGSRDGEARNHEFEQLA------------WRSNLLIFVTRSSDLSSIVVTARND 374 (1113)
T ss_pred ----------cceeeeeccccccccccccCCcccccchhhHhh------------hhccceEEEeccccccccceeeeee
Confidence 1112222221 247788888887777654221 122222223332222 233444444
Q ss_pred CCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCE
Q 001349 1003 GAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEF 1078 (1094)
Q Consensus 1003 g~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~ 1078 (1094)
..+.+|++.+|...+... |...+..+.++|- ...+++.||...|||+-.|.+++.+..+|. .+..-+||+||..
T Consensus 375 -~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~-kl~d~kFSqdgts 452 (1113)
T KOG0644|consen 375 -HRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHG-KLVDGKFSQDGTS 452 (1113)
T ss_pred -eEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccc-eeeccccCCCCce
Confidence 488999999998887776 6778888888875 677899999999999999998888866765 6777789999999
Q ss_pred EEEEeCCCcEEEEeC
Q 001349 1079 LVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1079 L~sgs~DG~I~iWdl 1093 (1094)
++....-|.++|...
T Consensus 453 ~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 453 IALSDDHGQLYILGT 467 (1113)
T ss_pred EecCCCCCceEEecc
Confidence 999888899988753
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.5e-15 Score=165.89 Aligned_cols=236 Identities=18% Similarity=0.234 Sum_probs=178.2
Q ss_pred eeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCc----eEEEeeCCCeEE
Q 001349 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNS----ILCFIPQGAGIK 921 (1094)
Q Consensus 846 ~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~----~~~fspdg~~l~ 921 (1094)
.+-..+.||++.|.+|...|.|.+|++|+.||+|+||.+.+| +|+......+.|.+++|++. .++.+-.+..++
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg--Rcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~i 468 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG--RCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLI 468 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc--eEEEEEeecceeEEEEecCCCCceeEEEEecCceEE
Confidence 355667899999999999999999999999999999999998 78888888889999996553 111111111111
Q ss_pred EEE-----------------------eCCeEEEE----------------cCCCCceEEEEeC--CEEEEEEcC---CeE
Q 001349 922 VHL-----------------------RNGKTKLL----------------NSSKYPKCLALVQ--GKVYCGCQD---GAI 957 (1094)
Q Consensus 922 ~~~-----------------------~~g~i~l~----------------~~~~~v~~l~~s~--~~l~sgs~D---g~I 957 (1094)
+.. .++.+..| .+.+.|+.+.|+. +++++.+.+ ..|
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 100 00111223 2345677777773 567766554 468
Q ss_pred EEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeC--C
Q 001349 958 QEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSS--E 1034 (1094)
Q Consensus 958 ~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~sp--d 1034 (1094)
.|+++...... ..|.-..+.|..+.|+|...+++.++.. .|+|||+.....+..+. +...|.+++++| |
T Consensus 549 liHQLSK~~sQ------~PF~kskG~vq~v~FHPs~p~lfVaTq~--~vRiYdL~kqelvKkL~tg~kwiS~msihp~GD 620 (733)
T KOG0650|consen 549 LIHQLSKRKSQ------SPFRKSKGLVQRVKFHPSKPYLFVATQR--SVRIYDLSKQELVKKLLTGSKWISSMSIHPNGD 620 (733)
T ss_pred EEEeccccccc------CchhhcCCceeEEEecCCCceEEEEecc--ceEEEehhHHHHHHHHhcCCeeeeeeeecCCCC
Confidence 88888776654 2333345679999999998888777644 79999999877777665 678899999999 5
Q ss_pred EEEEEEcCCeEEEEECCCC-cEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1035 LVYLGCKGGTVEIWDQKRQ-IRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1035 ~l~sgs~dg~I~vwd~~t~-~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
.+++|+.|+.+..||+.-+ ++.+++ ..|...+++++|++.-.++++|+.||++.||.
T Consensus 621 nli~gs~d~k~~WfDldlsskPyk~l-r~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 621 NLILGSYDKKMCWFDLDLSSKPYKTL-RLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred eEEEecCCCeeEEEEcccCcchhHHh-hhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 8999999999999999865 455566 57999999999999999999999999999874
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.9e-14 Score=140.16 Aligned_cols=269 Identities=12% Similarity=0.193 Sum_probs=191.9
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCC------------cceeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCc-
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHR------------ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSI- 844 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~------------~~~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~- 844 (1094)
..++++.+.+++.|..+|.|-+..++ ..+...++|.++|+.++|..++|++|+. |.|+-|......
T Consensus 15 ~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~e 93 (325)
T KOG0649|consen 15 AQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEE 93 (325)
T ss_pred HHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhhhh
Confidence 35577788899999999999999875 1234457899999999999888888876 999999765321
Q ss_pred ---ceeEEEe--cccC-----CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEe
Q 001349 845 ---LHLIQQI--REHT-----KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFI 914 (1094)
Q Consensus 845 ---~~~~~~l--~~H~-----~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fs 914 (1094)
.+.+... .-|. ..|+++-..|..+-++.++.|+.++-||+++|+.+.. ...|.+-+.++.
T Consensus 94 s~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~-~rGHtDYvH~vv--------- 163 (325)
T KOG0649|consen 94 SLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQRE-YRGHTDYVHSVV--------- 163 (325)
T ss_pred hccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEE-EcCCcceeeeee---------
Confidence 1112111 1233 3588999999877778888999999999999963322 223344444443
Q ss_pred eCCCeEEEEEeCCeEEEEcCCCCceEEEE--eCCEEEEEEcCCeEEEEECCCCceeEEeccc---eeecCC-CCCeEEEE
Q 001349 915 PQGAGIKVHLRNGKTKLLNSSKYPKCLAL--VQGKVYCGCQDGAIQEIDLATGTFATIQTGH---RKLLGK-ANPVHALQ 988 (1094)
Q Consensus 915 pdg~~l~~~~~~g~i~l~~~~~~v~~l~~--s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~---~~~~~h-~~~V~sl~ 988 (1094)
. ..+.+++|+.||++++||.++++.+...... ..+..| ...|.+++
T Consensus 164 ----------------------------~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala 215 (325)
T KOG0649|consen 164 ----------------------------GRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA 215 (325)
T ss_pred ----------------------------ecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe
Confidence 2 1346999999999999999999988654332 223333 24577777
Q ss_pred EeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcceE
Q 001349 989 VHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQ 1068 (1094)
Q Consensus 989 fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~ 1068 (1094)
.+.+ ++++|+ |..+.+|+++..+++..|+-...+..+.|..|.+++++..+.|.-|.+. |..-...+.+|. ..+
T Consensus 216 ~~ed--WlvCGg--Gp~lslwhLrsse~t~vfpipa~v~~v~F~~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~-~c~ 289 (325)
T KOG0649|consen 216 VNED--WLVCGG--GPKLSLWHLRSSESTCVFPIPARVHLVDFVDDCVLIGGEGNHVQSYTLN-GVLQANIPVEST-ACY 289 (325)
T ss_pred ccCc--eEEecC--CCceeEEeccCCCceEEEecccceeEeeeecceEEEeccccceeeeeec-cEEEEeccCCcc-cee
Confidence 6555 566664 4589999999999999999999999999999999999999999999875 333333433332 455
Q ss_pred EEEEcCC-CCEEEEEeCCCcEEEE
Q 001349 1069 CMALDDN-EEFLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1069 ~l~~Spd-g~~L~sgs~DG~I~iW 1091 (1094)
+..|+.. -++|-.++..+++.|+
T Consensus 290 s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 290 SASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred eecccCCceEEEEecccceeeeee
Confidence 5555432 3566667777777765
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-15 Score=170.25 Aligned_cols=250 Identities=18% Similarity=0.242 Sum_probs=177.7
Q ss_pred hhhccccccccccCcEEEEeeCCCCeEEEeCC----------cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEe
Q 001349 772 LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR----------ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWT 839 (1094)
Q Consensus 772 ~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~----------~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd 839 (1094)
+-..++..++.+.-..|++++.||++++|++. ..+.++.+|.++|.|+++.++ .+++|+-||+|+.|+
T Consensus 293 ~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~ 372 (577)
T KOG0642|consen 293 HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWN 372 (577)
T ss_pred chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeec
Confidence 33455566677777799999999999999982 467788999999999999986 999999999999996
Q ss_pred cCCC--------cceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceE
Q 001349 840 GRGS--------ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSIL 911 (1094)
Q Consensus 840 ~~t~--------~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~ 911 (1094)
+... .......+.||++.||.+++|+....|+++|.|||++.|+...... +........
T Consensus 373 ~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~------------ 439 (577)
T KOG0642|consen 373 LPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEH------------ 439 (577)
T ss_pred cCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCcccc------------
Confidence 5411 0134567889999999999999999999999999999999877543 111111000
Q ss_pred EEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCE---EEEEEcCCeEEEEECCCCceeEEeccce-eecCCCCCeEEE
Q 001349 912 CFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGK---VYCGCQDGAIQEIDLATGTFATIQTGHR-KLLGKANPVHAL 987 (1094)
Q Consensus 912 ~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~---l~sgs~Dg~I~iwDl~~~~~~~~~~~~~-~~~~h~~~V~sl 987 (1094)
+...++.+.... .++...-+.-.++|...+....++.... .-......+.-+
T Consensus 440 ------------------------g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~v 495 (577)
T KOG0642|consen 440 ------------------------GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKV 495 (577)
T ss_pred ------------------------CCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceE
Confidence 111112221111 1122222222333444443333222110 001112457778
Q ss_pred EEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEe
Q 001349 988 QVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETL 1059 (1094)
Q Consensus 988 ~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l 1059 (1094)
.++|+..+..++..|. .|+++|..++.++.... |...++++++.|+ ++++|+.||.+++|......++...
T Consensus 496 Vs~~~~~~~~~~hed~-~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es 569 (577)
T KOG0642|consen 496 VSHPTADITFTAHEDR-SIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLES 569 (577)
T ss_pred EecCCCCeeEecccCC-ceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecc
Confidence 8899998888888775 99999999999988776 8899999999999 8999999999999999887776665
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-14 Score=162.24 Aligned_cols=257 Identities=18% Similarity=0.263 Sum_probs=190.3
Q ss_pred cEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEE
Q 001349 815 KVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCV 892 (1094)
Q Consensus 815 ~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~ 892 (1094)
.|..++|-|| .|+.+. +..+.+||...| ..+.++++|.+.|.+++|+.||+.++||+.|+.|.+|+-.- .-+
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG--~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDG--TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGI 87 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCc--ccccccccccceEEEEEEccCCceeccCCCceeEEEecccc---cce
Confidence 7899999997 333332 357999999999 78999999999999999999999999999999999998754 344
Q ss_pred EecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEc----------CCCCceEEEEeC-C-EEEEEEcCCeEEEE
Q 001349 893 QVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN----------SSKYPKCLALVQ-G-KVYCGCQDGAIQEI 960 (1094)
Q Consensus 893 ~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~----------~~~~v~~l~~s~-~-~l~sgs~Dg~I~iw 960 (1094)
....|.+.|.++. |.|-...+++.+.+. .-+|. ....+.+.+|.+ | .++.|-.||+|.+-
T Consensus 88 LkYSH~D~IQCMs-------FNP~~h~LasCsLsd-FglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiR 159 (1081)
T KOG1538|consen 88 LKYSHNDAIQCMS-------FNPITHQLASCSLSD-FGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIR 159 (1081)
T ss_pred eeeccCCeeeEee-------cCchHHHhhhcchhh-ccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEee
Confidence 5567788899988 777776666544331 22343 234567777864 4 48899999999998
Q ss_pred ECCCCceeEEeccceeecCCCCCeEEEEEeCCcc-----EEEEEECCCCEEEEEECCCCeEEE-EecCCCCEEEEEEeCC
Q 001349 961 DLATGTFATIQTGHRKLLGKANPVHALQVHNGLV-----YTASTSLDGAAVKMWSTSNYNMVG-SLPTLSEVRAMVVSSE 1034 (1094)
Q Consensus 961 Dl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~-----~las~s~Dg~~I~iwd~~~~~~~~-~~~~~~~v~~l~~spd 1034 (1094)
+-.......+ .+..|...+|.+++|+|... .++..... .++..|.+. |+.+. .-.-+....++.+.++
T Consensus 160 Nk~gEek~~I----~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~-qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~N 233 (1081)
T KOG1538|consen 160 NKNGEEKVKI----ERPGGSNSPIWSICWNPSSGEGRNDILAVADWG-QTLSFYQLS-GKQIGKDRALNFDPCCISYFTN 233 (1081)
T ss_pred cCCCCcceEE----eCCCCCCCCceEEEecCCCCCCccceEEEEecc-ceeEEEEec-ceeecccccCCCCchhheeccC
Confidence 7543333322 23346778999999987532 33444443 366666653 44443 2223555678888777
Q ss_pred --EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1035 --LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1035 --~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
++..|+.|+.+.+|-. .|-.+.++ .....+|+.++..|++++++.|+.||+|-.|++
T Consensus 234 GEy~LiGGsdk~L~~fTR-~GvrLGTv-g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 234 GEYILLGGSDKQLSLFTR-DGVRLGTV-GEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred CcEEEEccCCCceEEEee-cCeEEeec-cccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 8999999999999974 46667777 345669999999999999999999999988875
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-13 Score=160.73 Aligned_cols=294 Identities=14% Similarity=0.202 Sum_probs=207.3
Q ss_pred EeeCCCCeEEEeCCcce------eecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCC--CcceeEEEecccCCCeE
Q 001349 790 SNGHDSSADFWNHRELV------HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG--SILHLIQQIREHTKAVT 859 (1094)
Q Consensus 790 s~s~dg~I~vWd~~~~~------~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t--~~~~~~~~l~~H~~~V~ 859 (1094)
..-.+..+.+|+..... .....|.-.++|.++||+ ++++|..||.|.+|.--. +.....+.+.-|...|+
T Consensus 176 ~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~ 255 (792)
T KOG1963|consen 176 GIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVN 255 (792)
T ss_pred EEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccc
Confidence 33445567788776311 222347777999999996 999999999999995433 32244566778999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC----
Q 001349 860 GLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS---- 935 (1094)
Q Consensus 860 sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~---- 935 (1094)
+++|++||.+|+|||..|.+-+|.+.+++.+ ......++|..+. ++||+...++...|..+.+....
T Consensus 256 ~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq--fLPRLgs~I~~i~-------vS~ds~~~sl~~~DNqI~li~~~dl~~ 326 (792)
T KOG1963|consen 256 SLSFSSDGAYLLSGGREGVLVLWQLETGKKQ--FLPRLGSPILHIV-------VSPDSDLYSLVLEDNQIHLIKASDLEI 326 (792)
T ss_pred eeEEecCCceEeecccceEEEEEeecCCCcc--cccccCCeeEEEE-------EcCCCCeEEEEecCceEEEEeccchhh
Confidence 9999999999999999999999999998633 3334577888887 99999999999999888877631
Q ss_pred -------------------CCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEecccee--ec---CCCCCeEEEEE
Q 001349 936 -------------------KYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRK--LL---GKANPVHALQV 989 (1094)
Q Consensus 936 -------------------~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~--~~---~h~~~V~sl~f 989 (1094)
+..+.+.+++ +.++..+..|+|++||+-+.+.+..+..... .. .+...++.++.
T Consensus 327 k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~ 406 (792)
T KOG1963|consen 327 KSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVAR 406 (792)
T ss_pred hhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehh
Confidence 1234455555 5688888999999999998876644321110 01 12235677777
Q ss_pred eCCccEEEEEEC--------CC-CEEEEEECCCCe----EEEEec--CCCCEEEEEEeCC----EEEEEEcCCeEEEEEC
Q 001349 990 HNGLVYTASTSL--------DG-AAVKMWSTSNYN----MVGSLP--TLSEVRAMVVSSE----LVYLGCKGGTVEIWDQ 1050 (1094)
Q Consensus 990 s~~~~~las~s~--------Dg-~~I~iwd~~~~~----~~~~~~--~~~~v~~l~~spd----~l~sgs~dg~I~vwd~ 1050 (1094)
+..+.++++.-. || ..+++|-..... +...+. |...+...++.+- ..++++.||.++||-.
T Consensus 407 ~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~ 486 (792)
T KOG1963|consen 407 SRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVF 486 (792)
T ss_pred hccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEE
Confidence 777888888632 11 267889765433 333333 5555555555432 7899999999999987
Q ss_pred CCCc---------EEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1051 KRQI---------RIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1051 ~t~~---------~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
...+ ....+..-|..+++..+|+.||. +++.+.|++|.+||.
T Consensus 487 ~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs-lla~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 487 TDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGS-LLAVSFDDTITIWDY 537 (792)
T ss_pred ecccccCcCccceEEeeeeccccCcccchhhcCCCc-EEEEecCCEEEEecC
Confidence 3211 12222123778999999999996 555667889999985
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.3e-14 Score=141.80 Aligned_cols=235 Identities=20% Similarity=0.287 Sum_probs=172.1
Q ss_pred cEEEEEEeCC--EEEEEECCCeEEEEecCCC--------cceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 001349 815 KVLSIACFRD--KIFSGHSDGTIKVWTGRGS--------ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSI 884 (1094)
Q Consensus 815 ~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~--------~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi 884 (1094)
.|.+-+|+|. +|+.|..+|+|.+..++.- ....+...++|.++|+.++|+ ..+|++|++ |.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeee
Confidence 3455567774 9999999999999987521 124566678999999999998 356777665 99999988
Q ss_pred CCCce--EEEEecccCcc--ceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC--CEEEEEEcCCeEE
Q 001349 885 GNEEI--HCVQVHDIKDQ--IQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ--GKVYCGCQDGAIQ 958 (1094)
Q Consensus 885 ~~~~~--~~~~~~~~~~~--V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~--~~l~sgs~Dg~I~ 958 (1094)
+.... .+........| +..+ .-..|+++-..| +.++.++.|+.++
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~-----------------------------evPeINam~ldP~enSi~~AgGD~~~y 139 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAV-----------------------------EVPEINAMWLDPSENSILFAGGDGVIY 139 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcc-----------------------------cCCccceeEeccCCCcEEEecCCeEEE
Confidence 75321 11111100000 0000 012344555443 5678888999999
Q ss_pred EEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec---C--------CCCEE
Q 001349 959 EIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---T--------LSEVR 1027 (1094)
Q Consensus 959 iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~---~--------~~~v~ 1027 (1094)
.||+++|+.. +.+.||++.|+++.--.....+.+|+.|| ++|+||.++++++..+. + +.+|-
T Consensus 140 ~~dlE~G~i~------r~~rGHtDYvH~vv~R~~~~qilsG~EDG-tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wig 212 (325)
T KOG0649|consen 140 QVDLEDGRIQ------REYRGHTDYVHSVVGRNANGQILSGAEDG-TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIG 212 (325)
T ss_pred EEEecCCEEE------EEEcCCcceeeeeeecccCcceeecCCCc-cEEEEeccccceeEEeccccChhhcCcccCceeE
Confidence 9999999987 77889999999999865556678899997 99999999999988775 1 35688
Q ss_pred EEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1028 AMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1028 ~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
+++.+.|++++|+.- .+.+|++++.++...|. -.+++..+.|. .+.+++++..+.|.-|.+
T Consensus 213 ala~~edWlvCGgGp-~lslwhLrsse~t~vfp--ipa~v~~v~F~--~d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 213 ALAVNEDWLVCGGGP-KLSLWHLRSSESTCVFP--IPARVHLVDFV--DDCVLIGGEGNHVQSYTL 273 (325)
T ss_pred EEeccCceEEecCCC-ceeEEeccCCCceEEEe--cccceeEeeee--cceEEEeccccceeeeee
Confidence 999999999988754 68999999999888884 45678888885 446777887777777765
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.2e-13 Score=153.96 Aligned_cols=277 Identities=27% Similarity=0.467 Sum_probs=204.7
Q ss_pred hhccccccccccCcEEEEeeCCCCeEEEeCCc---ceeecccCC-CcEEEEEE-eCC---EEEEEEC-CCeEEEEecCC-
Q 001349 773 RELRKYSPLAFEMVKVLSNGHDSSADFWNHRE---LVHVDSSEN-GKVLSIAC-FRD---KIFSGHS-DGTIKVWTGRG- 842 (1094)
Q Consensus 773 ~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~---~~~~~~~h~-~~V~~l~f-spd---~LaSgs~-Dg~I~vWd~~t- 842 (1094)
........+...+..++.++.|+.+.+|+... ....+.++. ..+..+.+ +++ .++..+. |+.+.+||..+
T Consensus 65 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 144 (466)
T COG2319 65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTP 144 (466)
T ss_pred cceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCC
Confidence 33444566667788899999999999999873 344455534 37777777 553 3444344 99999999998
Q ss_pred CcceeEEEecccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEE
Q 001349 843 SILHLIQQIREHTKAVTGLAILQSGEMLYSGSL-DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIK 921 (1094)
Q Consensus 843 ~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~-DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~ 921 (1094)
. .....+..|...|..+.|+|++..+++++. |+.+++|++..+.. ......+...+..+. |+|++..
T Consensus 145 ~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~-------~~~~~~~-- 212 (466)
T COG2319 145 G--KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP-LSTLAGHTDPVSSLA-------FSPDGGL-- 212 (466)
T ss_pred C--eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCce-EEeeccCCCceEEEE-------EcCCcce--
Confidence 5 577888899999999999999999999986 99999999997431 112222456666666 5555541
Q ss_pred EEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEEC
Q 001349 922 VHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSL 1001 (1094)
Q Consensus 922 ~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~ 1001 (1094)
.+++++.|+.|++||...+..... .+.+|.... ...|++++.++++++.
T Consensus 213 -------------------------~~~~~~~d~~i~~wd~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~ 261 (466)
T COG2319 213 -------------------------LIASGSSDGTIRLWDLSTGKLLRS-----TLSGHSDSV-VSSFSPDGSLLASGSS 261 (466)
T ss_pred -------------------------EEEEecCCCcEEEEECCCCcEEee-----ecCCCCcce-eEeECCCCCEEEEecC
Confidence 244458999999999887766631 466676664 3378898878888888
Q ss_pred CCCEEEEEECCCCeE-EEEe-cCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEec-ccCCcceEEEEEcCCC
Q 001349 1002 DGAAVKMWSTSNYNM-VGSL-PTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQ-TGTSGKVQCMALDDNE 1076 (1094)
Q Consensus 1002 Dg~~I~iwd~~~~~~-~~~~-~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~-~~h~~~I~~l~~Spdg 1076 (1094)
|+ .+++||...... ...+ .|...+.++.|+|+ .+++++.|+.+.+||..+........ ..|...+..+.|.+++
T Consensus 262 d~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (466)
T COG2319 262 DG-TIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDG 340 (466)
T ss_pred CC-cEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCC
Confidence 86 999999986654 4444 46788999999984 66668888999999998887666653 3677789999994343
Q ss_pred CEEEEE-eCCCcEEEEeC
Q 001349 1077 EFLVIG-TSDGRIQAWGL 1093 (1094)
Q Consensus 1077 ~~L~sg-s~DG~I~iWdl 1093 (1094)
..++.+ ..|+.+.+|++
T Consensus 341 ~~~~~~~~~d~~~~~~~~ 358 (466)
T COG2319 341 SLLVSGGSDDGTIRLWDL 358 (466)
T ss_pred CEEEEeecCCCcEEeeec
Confidence 566655 68899999986
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.4e-13 Score=154.45 Aligned_cols=267 Identities=12% Similarity=0.178 Sum_probs=170.8
Q ss_pred EEEeeCCCCeEEEeCCc-----ceeecccCCCcEEEEEEeCC--EEEEE-ECCCeEEEEecC-CCcceeEEEecccCCCe
Q 001349 788 VLSNGHDSSADFWNHRE-----LVHVDSSENGKVLSIACFRD--KIFSG-HSDGTIKVWTGR-GSILHLIQQIREHTKAV 858 (1094)
Q Consensus 788 l~s~s~dg~I~vWd~~~-----~~~~~~~h~~~V~~l~fspd--~LaSg-s~Dg~I~vWd~~-t~~~~~~~~l~~H~~~V 858 (1094)
+++.+.++.|.+|++.. ..... .+.+....++++|+ +|+++ ..++.|.+|++. ++.+..+.... ..+..
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p 82 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVV-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSP 82 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEE-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCc
Confidence 44557789999999852 22333 24466788999987 66555 468999999997 34333333332 33456
Q ss_pred EEEEEecCCCEEEEEeC-CCcEEEEECCCCc-e-EEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC
Q 001349 859 TGLAILQSGEMLYSGSL-DKTARVWSIGNEE-I-HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS 935 (1094)
Q Consensus 859 ~sv~fspdg~~LaSgs~-DgtI~vWdi~~~~-~-~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~ 935 (1094)
..++|+|+|+++++++. ++.|.+|++++.. . ............. .+.|+|+|+.+
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~-------~~~~~p~g~~l--------------- 140 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCH-------SANIDPDNRTL--------------- 140 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCccc-------EeEeCCCCCEE---------------
Confidence 78999999999988875 8899999997421 1 1111111111122 23377777753
Q ss_pred CCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEe-ccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCC-
Q 001349 936 KYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQ-TGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN- 1013 (1094)
Q Consensus 936 ~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~-~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~- 1013 (1094)
+++...++.|.+||+.+...+... ....... .......+.|+|++.++++....+++|.+||+..
T Consensus 141 ------------~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~ 207 (330)
T PRK11028 141 ------------WVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP 207 (330)
T ss_pred ------------EEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCC
Confidence 344556789999999763322110 0000111 1234568999999999888776446999999973
Q ss_pred -C--eEEEEec-------CCCCEEEEEEeCC--EEEEEE-cCCeEEEEECCCCc----EEEEecccCCcceEEEEEcCCC
Q 001349 1014 -Y--NMVGSLP-------TLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQKRQI----RIETLQTGTSGKVQCMALDDNE 1076 (1094)
Q Consensus 1014 -~--~~~~~~~-------~~~~v~~l~~spd--~l~sgs-~dg~I~vwd~~t~~----~~~~l~~~h~~~I~~l~~Spdg 1076 (1094)
+ +.+..+. +......+.++|+ +++++. .++.|.+|++.... .+..+..+ .....+.|+|||
T Consensus 208 ~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~--~~p~~~~~~~dg 285 (330)
T PRK11028 208 HGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE--TQPRGFNIDHSG 285 (330)
T ss_pred CCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc--ccCCceEECCCC
Confidence 3 2333332 1123346889998 777775 47899999986432 23333222 245688999999
Q ss_pred CEEEEEeC-CCcEEEEeC
Q 001349 1077 EFLVIGTS-DGRIQAWGL 1093 (1094)
Q Consensus 1077 ~~L~sgs~-DG~I~iWdl 1093 (1094)
++|++++. +++|.+|++
T Consensus 286 ~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 286 KYLIAAGQKSHHISVYEI 303 (330)
T ss_pred CEEEEEEccCCcEEEEEE
Confidence 99998775 899999976
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.2e-14 Score=153.63 Aligned_cols=207 Identities=17% Similarity=0.247 Sum_probs=158.0
Q ss_pred eeecccCCCcEEEEEEeC--C-EEEEEECCCeEEEEecCCCc-----ceeEEEecccCCCeEEEEEecC-CCEEEEEeCC
Q 001349 806 VHVDSSENGKVLSIACFR--D-KIFSGHSDGTIKVWTGRGSI-----LHLIQQIREHTKAVTGLAILQS-GEMLYSGSLD 876 (1094)
Q Consensus 806 ~~~~~~h~~~V~~l~fsp--d-~LaSgs~Dg~I~vWd~~t~~-----~~~~~~l~~H~~~V~sv~fspd-g~~LaSgs~D 876 (1094)
.....||+++|..++|+| | .|||||.|.+|.||++..+. ..++..+.+|...|.-|.|+|. .+.|+|+|.|
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 456789999999999998 3 99999999999999987542 2457788999999999999995 6789999999
Q ss_pred CcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCe
Q 001349 877 KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGA 956 (1094)
Q Consensus 877 gtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~ 956 (1094)
.+|.+||+.+|+- +....|.+-|.++. |+.||.. +++.+.|..
T Consensus 154 n~v~iWnv~tgea--li~l~hpd~i~S~s-------fn~dGs~----------------------------l~TtckDKk 196 (472)
T KOG0303|consen 154 NTVSIWNVGTGEA--LITLDHPDMVYSMS-------FNRDGSL----------------------------LCTTCKDKK 196 (472)
T ss_pred ceEEEEeccCCce--eeecCCCCeEEEEE-------eccCCce----------------------------eeeecccce
Confidence 9999999999962 22233788888887 7777764 888999999
Q ss_pred EEEEECCCCceeEEeccceeecCCCC-CeEEEEEeCCccEEEEEEC--CCCEEEEEECCCCe---EEEEecCCCCEEEEE
Q 001349 957 IQEIDLATGTFATIQTGHRKLLGKAN-PVHALQVHNGLVYTASTSL--DGAAVKMWSTSNYN---MVGSLPTLSEVRAMV 1030 (1094)
Q Consensus 957 I~iwDl~~~~~~~~~~~~~~~~~h~~-~V~sl~fs~~~~~las~s~--Dg~~I~iwd~~~~~---~~~~~~~~~~v~~l~ 1030 (1094)
|++||.++++.+..- .+|.+ .-..+.|-.++.++.+|-. ..+.+-+||..+-+ ....+...+.|.---
T Consensus 197 vRv~dpr~~~~v~e~------~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PF 270 (472)
T KOG0303|consen 197 VRVIDPRRGTVVSEG------VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPF 270 (472)
T ss_pred eEEEcCCCCcEeeec------ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEee
Confidence 999999999988532 34442 2334556666664444321 23589999987643 344555677787778
Q ss_pred EeCC---EEEEEEcCCeEEEEECCCCcE
Q 001349 1031 VSSE---LVYLGCKGGTVEIWDQKRQIR 1055 (1094)
Q Consensus 1031 ~spd---~l~sgs~dg~I~vwd~~t~~~ 1055 (1094)
+++| ..++|-.|+.||.|.+..-.+
T Consensus 271 yD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 271 YDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred ecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 8888 445566899999999877653
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.4e-14 Score=165.99 Aligned_cols=272 Identities=13% Similarity=0.198 Sum_probs=180.2
Q ss_pred cccCcEEEEeeCCCCeEEEeCCcc--eeeccc---CCCcEEEEEEeCC----EEEEEECCCeEEEEec-CC--CcceeEE
Q 001349 782 AFEMVKVLSNGHDSSADFWNHREL--VHVDSS---ENGKVLSIACFRD----KIFSGHSDGTIKVWTG-RG--SILHLIQ 849 (1094)
Q Consensus 782 ~~d~~~l~s~s~dg~I~vWd~~~~--~~~~~~---h~~~V~~l~fspd----~LaSgs~Dg~I~vWd~-~t--~~~~~~~ 849 (1094)
.+--..++++...-.|+|||+... ...+.. ....|+.+.+-++ ++.+|+.||.|+||+- .+ ++.+.+.
T Consensus 1073 hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVT 1152 (1387)
T KOG1517|consen 1073 HPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVT 1152 (1387)
T ss_pred cCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEE
Confidence 333446777777789999999832 222222 2467999999863 9999999999999963 22 2234444
Q ss_pred EecccC-------CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEE
Q 001349 850 QIREHT-------KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKV 922 (1094)
Q Consensus 850 ~l~~H~-------~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~ 922 (1094)
.+.+-+ +.=.-++|.....+|+++|+-..|+|||........-........++++. ++-
T Consensus 1153 aw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS---------~~~----- 1218 (1387)
T KOG1517|consen 1153 AWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALS---------ADL----- 1218 (1387)
T ss_pred eeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeec---------ccc-----
Confidence 433211 11133577775556666666789999999885311111111122222221 110
Q ss_pred EEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCC--eEEEEEeCCccE-EEEE
Q 001349 923 HLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANP--VHALQVHNGLVY-TAST 999 (1094)
Q Consensus 923 ~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~--V~sl~fs~~~~~-las~ 999 (1094)
...+.+++|..||.|++||.+...... .......|... |..+.+.++|.- ++++
T Consensus 1219 --------------------~~gn~i~AGfaDGsvRvyD~R~a~~ds---~v~~~R~h~~~~~Iv~~slq~~G~~elvSg 1275 (1387)
T KOG1517|consen 1219 --------------------VHGNIIAAGFADGSVRVYDRRMAPPDS---LVCVYREHNDVEPIVHLSLQRQGLGELVSG 1275 (1387)
T ss_pred --------------------cCCceEEEeecCCceEEeecccCCccc---cceeecccCCcccceeEEeecCCCcceeee
Confidence 013468999999999999988654321 11345567766 999999876555 8999
Q ss_pred ECCCCEEEEEECCCCeEEEEec---C---CCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEec------ccCCc
Q 001349 1000 SLDGAAVKMWSTSNYNMVGSLP---T---LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQ------TGTSG 1065 (1094)
Q Consensus 1000 s~Dg~~I~iwd~~~~~~~~~~~---~---~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~------~~h~~ 1065 (1094)
+.+| .|++||++.......+. | ++..+++.++++ .+++|+. +.|.||++...+ +..++ ....+
T Consensus 1276 s~~G-~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~-l~~~k~n~~F~~q~~g 1352 (1387)
T KOG1517|consen 1276 SQDG-DIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ-LNIIKYNPGFMGQRIG 1352 (1387)
T ss_pred ccCC-eEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh-hcccccCcccccCcCC
Confidence 9997 99999999753222222 2 345999999987 8888888 999999986433 33332 12334
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1066 KVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1066 ~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
.++|++|+|..-.+++|+.|.+|.||..
T Consensus 1353 s~scL~FHP~~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1353 SVSCLAFHPHRLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred CcceeeecchhHhhhhccCCceEEEeec
Confidence 7899999999999999999999999964
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.3e-14 Score=159.00 Aligned_cols=252 Identities=14% Similarity=0.190 Sum_probs=195.1
Q ss_pred ccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEE
Q 001349 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQ 850 (1094)
Q Consensus 775 ~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~ 850 (1094)
.+.-.++.|||..++.+..+ .+.+||.. ...+++.+|.+.|+|++|+.| .++||+.|..|.+|+-.-. -.+ .
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE--G~L-k 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE--GIL-K 89 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc--cee-e
Confidence 44557788999988776554 57789998 678899999999999999987 9999999999999987543 122 2
Q ss_pred ecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEE
Q 001349 851 IREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK 930 (1094)
Q Consensus 851 l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~ 930 (1094)
+ .|++.|.|+.|+|-...|+|++-. ..-+|..... .+..+.....+.+.+ |..||++++.+..+|++.
T Consensus 90 Y-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK---~V~K~kss~R~~~Cs-------WtnDGqylalG~~nGTIs 157 (1081)
T KOG1538|consen 90 Y-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK---SVSKHKSSSRIICCS-------WTNDGQYLALGMFNGTIS 157 (1081)
T ss_pred e-ccCCeeeEeecCchHHHhhhcchh-hccccChhhh---hHHhhhhheeEEEee-------ecCCCcEEEEeccCceEE
Confidence 2 599999999999999999999874 4678988763 222233334455544 999999999999999998
Q ss_pred EEcC--------------CCCceEEEEeCC-------EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEE
Q 001349 931 LLNS--------------SKYPKCLALVQG-------KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQV 989 (1094)
Q Consensus 931 l~~~--------------~~~v~~l~~s~~-------~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~f 989 (1094)
+-+. +..|.+++++++ .+++.....++.+|.+. |+.+. +-..-.....|+.+
T Consensus 158 iRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Ig------k~r~L~FdP~CisY 230 (1081)
T KOG1538|consen 158 IRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIG------KDRALNFDPCCISY 230 (1081)
T ss_pred eecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeec------ccccCCCCchhhee
Confidence 7763 457899999752 37788888888888775 44331 11112234568889
Q ss_pred eCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECC
Q 001349 990 HNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQK 1051 (1094)
Q Consensus 990 s~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~ 1051 (1094)
.++|.|+..|+.|+ .+++|. +.|-.+.++. ...+|+.++..|+ +++.|+.||+|-.|++.
T Consensus 231 f~NGEy~LiGGsdk-~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 231 FTNGEYILLGGSDK-QLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ccCCcEEEEccCCC-ceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 99999999999886 888885 5677777776 5789999999999 89999999999999864
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.1e-14 Score=149.29 Aligned_cols=217 Identities=15% Similarity=0.154 Sum_probs=152.7
Q ss_pred ccccCcEEEEeeCCCCeEEEeCC---------cceeecccCCCcEEEEEEeC---CEEEEEECCCeEEEEecCCCcceeE
Q 001349 781 LAFEMVKVLSNGHDSSADFWNHR---------ELVHVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWTGRGSILHLI 848 (1094)
Q Consensus 781 ~~~d~~~l~s~s~dg~I~vWd~~---------~~~~~~~~h~~~V~~l~fsp---d~LaSgs~Dg~I~vWd~~t~~~~~~ 848 (1094)
--|+...||+||.|.+|.||.+. .....+.+|...|.-+.|+| +.|+|++.|.+|.+||+.|+ ..+
T Consensus 90 ~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tg--eal 167 (472)
T KOG0303|consen 90 CPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTG--EAL 167 (472)
T ss_pred CccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCC--cee
Confidence 34577899999999999999875 34667889999999999999 49999999999999999999 666
Q ss_pred EEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEE-ecccCccceeeeecCceEEEeeCCCeEEEEEeCC
Q 001349 849 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQ-VHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNG 927 (1094)
Q Consensus 849 ~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~-~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g 927 (1094)
.++. |.+-|+++.|+.||.+|+|++.|+.|||||.++++..... .+....+... .|..+|. +++.+.
T Consensus 168 i~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Ra--------ifl~~g~-i~tTGf-- 235 (472)
T KOG0303|consen 168 ITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARA--------IFLASGK-IFTTGF-- 235 (472)
T ss_pred eecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCccee--------EEeccCc-eeeecc--
Confidence 6776 9999999999999999999999999999999998743333 2222222222 2666665 222221
Q ss_pred eEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEE
Q 001349 928 KTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVK 1007 (1094)
Q Consensus 928 ~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~ 1007 (1094)
+-..+..+-+||..+-.....+ ..+ ..++.|.---|++|...+..++..++.|+
T Consensus 236 ----------------------sr~seRq~aLwdp~nl~eP~~~---~el-DtSnGvl~PFyD~dt~ivYl~GKGD~~IR 289 (472)
T KOG0303|consen 236 ----------------------SRMSERQIALWDPNNLEEPIAL---QEL-DTSNGVLLPFYDPDTSIVYLCGKGDSSIR 289 (472)
T ss_pred ----------------------ccccccceeccCcccccCccee---EEe-ccCCceEEeeecCCCCEEEEEecCCcceE
Confidence 2235677888887664432111 111 12234443445677666666665556999
Q ss_pred EEECCCCeE----EEEecCCCCEEEEEEeCCEEE
Q 001349 1008 MWSTSNYNM----VGSLPTLSEVRAMVVSSELVY 1037 (1094)
Q Consensus 1008 iwd~~~~~~----~~~~~~~~~v~~l~~spd~l~ 1037 (1094)
-|.+.+-.+ +.+|....+-.++.|-|..-+
T Consensus 290 YyEit~d~P~~hyln~f~S~epQRG~g~mPKRGl 323 (472)
T KOG0303|consen 290 YFEITNEPPFVHYLNTFSSKEPQRGMGFMPKRGL 323 (472)
T ss_pred EEEecCCCceeEEecccccCCccccccccccccc
Confidence 999976542 334445566677777776433
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.8e-14 Score=151.81 Aligned_cols=267 Identities=13% Similarity=0.133 Sum_probs=193.5
Q ss_pred ccccccccc-C-cEEEEeeCCCCeEEEeCC------cceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCc
Q 001349 776 RKYSPLAFE-M-VKVLSNGHDSSADFWNHR------ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSI 844 (1094)
Q Consensus 776 ~~~~~~~~d-~-~~l~s~s~dg~I~vWd~~------~~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~ 844 (1094)
+....|.+. . +.+++|...|.|-+||+. .....+..|.++|.++.|+|. .+++.|+||+|+.-|++++.
T Consensus 189 it~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i 268 (498)
T KOG4328|consen 189 ITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNI 268 (498)
T ss_pred eEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchh
Confidence 334444442 2 478888899999999994 456778899999999999993 99999999999999999886
Q ss_pred ceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCC-eEEEE
Q 001349 845 LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGA-GIKVH 923 (1094)
Q Consensus 845 ~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~-~l~~~ 923 (1094)
...+.........+.++.|+.+...++.|..=|...+||.+++.-......-|+..|.+++ +.|... .++++
T Consensus 269 ~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~-------~NP~~p~~laT~ 341 (498)
T KOG4328|consen 269 SEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVA-------LNPVCPWFLATA 341 (498)
T ss_pred hHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceee-------cCCCCchheeec
Confidence 5556555545566788999988888888888789999999987643444444566899988 666554 66788
Q ss_pred EeCCeEEEEcC----------------CCCceEEEEeC--CEEEEEEcCCeEEEEECC----CCceeEEeccceeecCCC
Q 001349 924 LRNGKTKLLNS----------------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLA----TGTFATIQTGHRKLLGKA 981 (1094)
Q Consensus 924 ~~~g~i~l~~~----------------~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~----~~~~~~~~~~~~~~~~h~ 981 (1094)
+.|++.++||. ...|.+..|+| +.|++.+.|..|++||.. .......... ....+.-
T Consensus 342 s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~H-n~~t~Rw 420 (498)
T KOG4328|consen 342 SLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPH-NNRTGRW 420 (498)
T ss_pred ccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeec-cCccccc
Confidence 88999999984 34577777875 679999999999999974 2222211111 1111111
Q ss_pred CCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCC--CCEEE-EEEeCC--EEEEE-EcCCeEEEEECC
Q 001349 982 NPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTL--SEVRA-MVVSSE--LVYLG-CKGGTVEIWDQK 1051 (1094)
Q Consensus 982 ~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~--~~v~~-l~~spd--~l~sg-s~dg~I~vwd~~ 1051 (1094)
-......|+|+..+++.+..-. .|-|+|-..++.+..+... ..|.+ ..|+|- .+++| +..|.|+||--+
T Consensus 421 lT~fKA~W~P~~~li~vg~~~r-~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 421 LTPFKAAWDPDYNLIVVGRYPR-PIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ccchhheeCCCccEEEEeccCc-ceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 1234567999999999987764 8999999999888876632 23433 467775 35554 467889988654
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-13 Score=140.79 Aligned_cols=258 Identities=18% Similarity=0.207 Sum_probs=178.7
Q ss_pred CCCeEEEeCCc-----ceeecccCCCcEEEEEEeCC---EEEEEECC-------CeEEEEecCCCc-------ceeEEEe
Q 001349 794 DSSADFWNHRE-----LVHVDSSENGKVLSIACFRD---KIFSGHSD-------GTIKVWTGRGSI-------LHLIQQI 851 (1094)
Q Consensus 794 dg~I~vWd~~~-----~~~~~~~h~~~V~~l~fspd---~LaSgs~D-------g~I~vWd~~t~~-------~~~~~~l 851 (1094)
|+.|.+-+++. ...++..|.+.|+.++-+|- .|+|+..+ ..+.||.+.... +.++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 46676666651 23567778999999999983 66666542 347899876431 2334444
Q ss_pred c-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecc-----cCccceeeeecCceEEEeeCCCeEEEEEe
Q 001349 852 R-EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHD-----IKDQIQNLAVSNSILCFIPQGAGIKVHLR 925 (1094)
Q Consensus 852 ~-~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~-----~~~~V~~v~~~~~~~~fspdg~~l~~~~~ 925 (1094)
. .+-+.|.|+.|.|++..+++-. |..|.+|++..+......... +.....+-. |+|.
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~-------WspH--------- 181 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGA-------WSPH--------- 181 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccc-------cCCC---------
Confidence 3 5667899999999999999877 778999999886421111110 000111111 2221
Q ss_pred CCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccE-EEEEECCCC
Q 001349 926 NGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVY-TASTSLDGA 1004 (1094)
Q Consensus 926 ~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~-las~s~Dg~ 1004 (1094)
+++.-+....|+++..||+++..... ..-..|...|..+.|+|+..+ +++++.| +
T Consensus 182 ------------------Hdgnqv~tt~d~tl~~~D~RT~~~~~-----sI~dAHgq~vrdlDfNpnkq~~lvt~gDd-g 237 (370)
T KOG1007|consen 182 ------------------HDGNQVATTSDSTLQFWDLRTMKKNN-----SIEDAHGQRVRDLDFNPNKQHILVTCGDD-G 237 (370)
T ss_pred ------------------CccceEEEeCCCcEEEEEccchhhhc-----chhhhhcceeeeccCCCCceEEEEEcCCC-c
Confidence 12335556789999999999877653 233568889999999988665 5555555 5
Q ss_pred EEEEEECCC-CeEEEEec-CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCC--------------------------
Q 001349 1005 AVKMWSTSN-YNMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQ-------------------------- 1053 (1094)
Q Consensus 1005 ~I~iwd~~~-~~~~~~~~-~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~-------------------------- 1053 (1094)
.|+|||.++ ..+++.+. |..+|+++.|+|. ++.+|+.|..|.+|...+-
T Consensus 238 yvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kp 317 (370)
T KOG1007|consen 238 YVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKP 317 (370)
T ss_pred cEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccc
Confidence 999999986 45777777 7889999999986 7999999999999964321
Q ss_pred ---cEEEEecccCCcceEEEEEcCCCCE-EEEEeCCCcEEEEeC
Q 001349 1054 ---IRIETLQTGTSGKVQCMALDDNEEF-LVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1054 ---~~~~~l~~~h~~~I~~l~~Spdg~~-L~sgs~DG~I~iWdl 1093 (1094)
..+.++ ..|.+.|.+++||.-..+ +++-+.||++.|=.+
T Consensus 318 L~dg~l~ty-dehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 318 LQDGQLETY-DEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred ccccccccc-cccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 123345 468899999999886665 567799999877443
|
|
| >smart00504 Ubox Modified RING finger domain | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.3e-15 Score=126.05 Aligned_cols=63 Identities=44% Similarity=0.876 Sum_probs=59.4
Q ss_pred ceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHH
Q 001349 163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASW 227 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~ 227 (1094)
+|.||||+++|+|||+++|||+||+.||.+|+.. +..||.|++.++..+++ ||..|++.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~-~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLI-PNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhce-eCHHHHHHHHhC
Confidence 5789999999999999999999999999999987 66899999999999997 999999999987
|
Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.4e-13 Score=160.25 Aligned_cols=261 Identities=19% Similarity=0.237 Sum_probs=181.6
Q ss_pred EeCC-cceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCC-----CcceeEEEecccCCCeEEEEEecCCCEE
Q 001349 800 WNHR-ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRG-----SILHLIQQIREHTKAVTGLAILQSGEML 870 (1094)
Q Consensus 800 Wd~~-~~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t-----~~~~~~~~l~~H~~~V~sv~fspdg~~L 870 (1094)
|+.+ ..+..+..|...|..++.+++ +++|||.||+|++||... +..+...++..-.+.+.++.+.+.|+.+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 7776 455667788999999999874 999999999999999753 2234555555567889999999999999
Q ss_pred EEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEe---CC-
Q 001349 871 YSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV---QG- 946 (1094)
Q Consensus 871 aSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s---~~- 946 (1094)
|.++.||.|++.+++.......... ...+.... .+|. .+...++. ..
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~--~~ri~n~~---------~~g~------------------vv~m~a~~~~~~S~ 1164 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVAT--QVRIPNLK---------KDGV------------------VVSMHAFTAIVQSH 1164 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceee--eeeccccc---------CCCc------------------eEEeecccccccce
Confidence 9999999999999987310000000 00000000 0010 01111111 11
Q ss_pred EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecC--CC
Q 001349 947 KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT--LS 1024 (1094)
Q Consensus 947 ~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~--~~ 1024 (1094)
.++.+...+.|..||++........+ .....+.|++++.+|.+.+++.|+..| .+.+||++-+.++.++.+ ..
T Consensus 1165 ~lvy~T~~~~iv~~D~r~~~~~w~lk----~~~~hG~vTSi~idp~~~WlviGts~G-~l~lWDLRF~~~i~sw~~P~~~ 1239 (1431)
T KOG1240|consen 1165 VLVYATDLSRIVSWDTRMRHDAWRLK----NQLRHGLVTSIVIDPWCNWLVIGTSRG-QLVLWDLRFRVPILSWEHPARA 1239 (1431)
T ss_pred eEEEEEeccceEEecchhhhhHHhhh----cCccccceeEEEecCCceEEEEecCCc-eEEEEEeecCceeecccCcccC
Confidence 47778889999999999876554322 223347899999999999999999887 999999999998888774 56
Q ss_pred CEEEEEEeCC-----E-EEEEE-cCCeEEEEECCCCcEEEEecccCCc------------------ceEEEEEcCCCCEE
Q 001349 1025 EVRAMVVSSE-----L-VYLGC-KGGTVEIWDQKRQIRIETLQTGTSG------------------KVQCMALDDNEEFL 1079 (1094)
Q Consensus 1025 ~v~~l~~spd-----~-l~sgs-~dg~I~vwd~~t~~~~~~l~~~h~~------------------~I~~l~~Spdg~~L 1079 (1094)
++..+..+|- . +.+|+ ..+.|.+|++.+|.+-.++..+... ......+...+.++
T Consensus 1240 ~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ 1319 (1431)
T KOG1240|consen 1240 PIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFL 1319 (1431)
T ss_pred CcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCcee
Confidence 6777777653 3 44444 6789999999999877777533110 11223343445689
Q ss_pred EEEeCCCcEEEEeCC
Q 001349 1080 VIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1080 ~sgs~DG~I~iWdls 1094 (1094)
.+|+.|+.|+.||.+
T Consensus 1320 ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1320 LTGGSDMKIRKWDPT 1334 (1431)
T ss_pred eecCCccceeeccCC
Confidence 999999999999974
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-12 Score=138.46 Aligned_cols=234 Identities=16% Similarity=0.222 Sum_probs=166.4
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEe--eCCCeEEEEEeCCeEEEE
Q 001349 855 TKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFI--PQGAGIKVHLRNGKTKLL 932 (1094)
Q Consensus 855 ~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fs--pdg~~l~~~~~~g~i~l~ 932 (1094)
...+..+.|+.|...|..|+.|| .++|...... ++.........|..+-++.+.+++. ++++.+.+........+-
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~-k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFE-KCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchH-HhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEE
Confidence 34567777999999999999998 6788876543 1222222223344444444444332 233333333333222221
Q ss_pred --cCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEE-ECCCCEEEEE
Q 001349 933 --NSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAST-SLDGAAVKMW 1009 (1094)
Q Consensus 933 --~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~-s~Dg~~I~iw 1009 (1094)
.-...|-++.++..++++.=.+. |++||+++.+.+.+.. ....+...+..+.+++++.|++-- +.+.+.|.+|
T Consensus 83 e~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~---t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 83 EIFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIE---TTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF 158 (391)
T ss_pred EEecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhh---ccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence 22456777777777877766554 9999999998875432 222455567777777766676653 3344599999
Q ss_pred ECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCe-EEEEECCCCcEEEEecccCC-cceEEEEEcCCCCEEEEEeC
Q 001349 1010 STSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGT-VEIWDQKRQIRIETLQTGTS-GKVQCMALDDNEEFLVIGTS 1084 (1094)
Q Consensus 1010 d~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~-I~vwd~~t~~~~~~l~~~h~-~~I~~l~~Spdg~~L~sgs~ 1084 (1094)
|+.+-+++..+. |.+.+.+++|+++ +++++|+.|+ ||||.+.+|+.+..|..|.. ..|.+++|+||+++|++.|+
T Consensus 159 d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~ 238 (391)
T KOG2110|consen 159 DTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSN 238 (391)
T ss_pred EcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecC
Confidence 999999999998 8999999999999 8999999886 79999999999999976543 37899999999999999999
Q ss_pred CCcEEEEeCC
Q 001349 1085 DGRIQAWGLS 1094 (1094)
Q Consensus 1085 DG~I~iWdls 1094 (1094)
.++|+||.+.
T Consensus 239 TeTVHiFKL~ 248 (391)
T KOG2110|consen 239 TETVHIFKLE 248 (391)
T ss_pred CCeEEEEEec
Confidence 9999999873
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.9e-13 Score=138.24 Aligned_cols=263 Identities=14% Similarity=0.228 Sum_probs=183.7
Q ss_pred cEEEEeeC----CCCeEEEeCC----c-ceeecccCCCcEEEEEEeCC-------EEEEEECCCeEEEEecCC--Cccee
Q 001349 786 VKVLSNGH----DSSADFWNHR----E-LVHVDSSENGKVLSIACFRD-------KIFSGHSDGTIKVWTGRG--SILHL 847 (1094)
Q Consensus 786 ~~l~s~s~----dg~I~vWd~~----~-~~~~~~~h~~~V~~l~fspd-------~LaSgs~Dg~I~vWd~~t--~~~~~ 847 (1094)
.+++.|+. .+.|.|-... + .......|.-+++.+.|.|+ +|||.+ ..+|+|.+.. +...+
T Consensus 60 ~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~ 137 (364)
T KOG0290|consen 60 FRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVEL 137 (364)
T ss_pred eeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceeh
Confidence 36777765 3566665443 1 11122578899999999985 566554 4799998873 32222
Q ss_pred EEEe-----cccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCce--EEEEecccCccceeeeecCceEEEeeCCCe
Q 001349 848 IQQI-----REHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEI--HCVQVHDIKDQIQNLAVSNSILCFIPQGAG 919 (1094)
Q Consensus 848 ~~~l-----~~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~--~~~~~~~~~~~V~~v~~~~~~~~fspdg~~ 919 (1094)
...+ ..|..++++..|+. |.++|.+.|-|-|..|||+.+|.. ...+...|...|..++ |..+|..
T Consensus 138 ~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa-------f~~~s~~ 210 (364)
T KOG0290|consen 138 QSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA-------FLKGSRD 210 (364)
T ss_pred hhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEE-------eccCccc
Confidence 1112 34667899999998 889999999999999999998732 2233344556666665 4443332
Q ss_pred EEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEE-eccceeecCCCCCeEEEEEe-CCccEEE
Q 001349 920 IKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATI-QTGHRKLLGKANPVHALQVH-NGLVYTA 997 (1094)
Q Consensus 920 l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~-~~~~~~~~~h~~~V~sl~fs-~~~~~la 997 (1094)
.+++.+.||+|++||++.-....+ +... ....+...++|+ .|-.+++
T Consensus 211 ---------------------------~FASvgaDGSvRmFDLR~leHSTIIYE~p----~~~~pLlRLswnkqDpnymA 259 (364)
T KOG0290|consen 211 ---------------------------VFASVGADGSVRMFDLRSLEHSTIIYEDP----SPSTPLLRLSWNKQDPNYMA 259 (364)
T ss_pred ---------------------------eEEEecCCCcEEEEEecccccceEEecCC----CCCCcceeeccCcCCchHHh
Confidence 489999999999999997665432 2211 113577788887 4677889
Q ss_pred EEECCCCEEEEEECCC-CeEEEEec-CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCc------EEEEecccCCcc
Q 001349 998 STSLDGAAVKMWSTSN-YNMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQI------RIETLQTGTSGK 1066 (1094)
Q Consensus 998 s~s~Dg~~I~iwd~~~-~~~~~~~~-~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~------~~~~l~~~h~~~ 1066 (1094)
+...|...|.|.|++. ..++..+. |.+.|++++|.|. .+.++++|..+-+||+...- ++..+. ..+.
T Consensus 260 Tf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~--a~~E 337 (364)
T KOG0290|consen 260 TFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT--AGGE 337 (364)
T ss_pred hhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh--ccce
Confidence 9888888999999986 45667776 8899999999987 89999999999999987532 223332 3457
Q ss_pred eEEEEEcC-CCCEEEEEeCCCcEEEE
Q 001349 1067 VQCMALDD-NEEFLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1067 I~~l~~Sp-dg~~L~sgs~DG~I~iW 1091 (1094)
|+.+.|++ .+.+++.+. ++++.|-
T Consensus 338 VNqi~Ws~~~~Dwiai~~-~kkleiL 362 (364)
T KOG0290|consen 338 VNQIQWSSSQPDWIAICF-GKKLEIL 362 (364)
T ss_pred eeeeeecccCCCEEEEEe-cCeeeEE
Confidence 99999996 456777665 4455543
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-12 Score=170.71 Aligned_cols=324 Identities=13% Similarity=0.107 Sum_probs=228.2
Q ss_pred HHHHHHHHHHhhhcc-ccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcc
Q 001349 265 TITELKHAITSLCMS-EILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGS 343 (1094)
Q Consensus 265 ~~~~l~~~i~~L~~s-~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s 343 (1094)
........+++|... ...++++.|+.+|+++++...+++.+.. ..+.++.-++.+|. +.+..+++.++++|.+| +
T Consensus 11 ~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia--~~aGaIP~LV~lL~-sg~~~vk~nAaaaL~nL-S 86 (2102)
T PLN03200 11 TLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIG--SHSQAMPLLVSLLR-SGTLGAKVNAAAVLGVL-C 86 (2102)
T ss_pred hHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHH--HccCcHHHHHHHHc-CCCHHHHHHHHHHHHHH-h
Confidence 366778888888854 2456689999999999999998877662 12233333444443 56788999999999999 4
Q ss_pred cccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCC---hHHHH----HhhhhHHHHHHHHhcccccccccc
Q 001349 344 RDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPS---TRTLI----EMDMMESLMTVIKKKEEDFLKMCL 412 (1094)
Q Consensus 344 ~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~---~~~~~----~~~~~~~Ll~~l~~~~~~~~~~~~ 412 (1094)
.++.++..|+. .|.+++|+.+|++| +..||.+||.|+.. +.+.. .-|.+|+|+++|+.|+....
T Consensus 87 ~~e~nk~~Iv~-~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~---- 161 (2102)
T PLN03200 87 KEEDLRVKVLL-GGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDK---- 161 (2102)
T ss_pred cCHHHHHHHHH-cCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhH----
Confidence 55668888885 78999999999998 66778899999775 43332 34556999999999852110
Q ss_pred CchhhHHHHHHHHhcCCcccccccch-hhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchh
Q 001349 413 KPKSVSVLLLGQMIGDSEESIVSSIA-NTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAP 491 (1094)
Q Consensus 413 ~~~~aa~~~l~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~ 491 (1094)
.-+..|+.+|..| +...++. ..++..|++|.|++++.+++...+..|+.+|.+.+..+...+..+.+.+.+++
T Consensus 162 ~L~~~Av~AL~nL------s~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~ 235 (2102)
T PLN03200 162 VVEGLLTGALRNL------CGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQ 235 (2102)
T ss_pred HHHHHHHHHHHHH------hcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHH
Confidence 0122334556655 4455655 56789999999999999999999999999998888887779999999999999
Q ss_pred HHHHHHhcCC-chhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCc-------c--chhHHHHH
Q 001349 492 VMESFMAASD-GERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHD-------Q--CPVVAGLL 561 (1094)
Q Consensus 492 ~~~l~~~~~~-~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~-------~--~~~~a~~l 561 (1094)
|+++|+++++ ..|+.|+..|.++... ..+..+.|.+.|++.. |+.+++....+ | +.-++..|
T Consensus 236 LV~LL~sg~~~~VRE~AA~AL~nLAs~-----s~e~r~~Iv~aGgIp~---LI~lL~sp~~e~~~~~~~~~Lqe~AvwAL 307 (2102)
T PLN03200 236 LLKLLGQGNEVSVRAEAAGALEALSSQ-----SKEAKQAIADAGGIPA---LINATVAPSKEFMQGEFAQALQENAMGAL 307 (2102)
T ss_pred HHHHHccCCChHHHHHHHHHHHHHhcC-----CHHHHHHHHHCCCHHH---HHHHHhCcchhhhccccchHHHHHHHHHH
Confidence 9999987655 7799999999888765 3455566777777666 66666532211 1 22333333
Q ss_pred Hhhhc-----------------------------------ccCCCCCC-ccH-HHHHHHHHHHhhcCCChHHHHHHHHHH
Q 001349 562 LQLDL-----------------------------------LAEPRKMS-IYR-EEAIDTLISCLRNSDYPAAQLAAAKTI 604 (1094)
Q Consensus 562 ~~l~~-----------------------------------~~~~~~~~-~~r-eea~~~~~~~l~~~~~~~~~~~~~~~~ 604 (1094)
.++.- +..+.+.. ++. -.++.+|+..+++.+...+|+.++.||
T Consensus 308 sNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eAL 387 (2102)
T PLN03200 308 ANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEAL 387 (2102)
T ss_pred HHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHH
Confidence 33211 11111111 111 123578999999998777788888888
Q ss_pred Hhccccc
Q 001349 605 VSLQGRF 611 (1094)
Q Consensus 605 ~~l~g~~ 611 (1094)
..|.|..
T Consensus 388 asl~gN~ 394 (2102)
T PLN03200 388 ASLYGNA 394 (2102)
T ss_pred HHhcCCh
Confidence 7655543
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.8e-12 Score=133.49 Aligned_cols=304 Identities=14% Similarity=0.127 Sum_probs=206.8
Q ss_pred cccccccccCcEEEEeeCCCCeEEEeCCc--ceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEE
Q 001349 776 RKYSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQ 850 (1094)
Q Consensus 776 ~~~~~~~~d~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~ 850 (1094)
...+.|+++|+++++.+.- .+.|-|..+ ..+.+ .--+.|.-+-|.-| .|.....|+.|.+|++... .-...
T Consensus 11 ~~~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf-~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp--ew~ck 86 (447)
T KOG4497|consen 11 NPFCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF-LCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP--EWYCK 86 (447)
T ss_pred CCceeECCCCCeeeeeeee-EEEEeccchhhHHHHH-HHHHHhhheeeeccceeeeeeeeccceEEEEEeecc--eeEEE
Confidence 3478899999999998776 566667652 11221 11456777888876 6777788999999999988 45556
Q ss_pred ecccCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecC---------------------
Q 001349 851 IREHTKAVTGLAILQSGE-MLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSN--------------------- 908 (1094)
Q Consensus 851 l~~H~~~V~sv~fspdg~-~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~--------------------- 908 (1094)
+.+...++.++.|||||+ .|.+..-|-.|.||.+.+.+...+... +..+..+++.+
T Consensus 87 Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~p--K~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~ 164 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHP--KTNVKGYAFHPDGQFCAILSRRDCKDYVQISS 164 (447)
T ss_pred eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEeccc--ccCceeEEECCCCceeeeeecccHHHHHHHHh
Confidence 777888999999999995 555666688999999998653332222 22223333111
Q ss_pred -----------------ceEEEeeCCCeEEEEEeC--CeEEEEcCCCCceEEEEeC-C-EEEEEEcCCeEEEEECCCCce
Q 001349 909 -----------------SILCFIPQGAGIKVHLRN--GKTKLLNSSKYPKCLALVQ-G-KVYCGCQDGAIQEIDLATGTF 967 (1094)
Q Consensus 909 -----------------~~~~fspdg~~l~~~~~~--g~i~l~~~~~~v~~l~~s~-~-~l~sgs~Dg~I~iwDl~~~~~ 967 (1094)
..+-|+|||..+++...- -.+..+.-+-.+..+.++| + .+++|+.|+.+++.+--+-+.
T Consensus 165 c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~ 244 (447)
T KOG4497|consen 165 CKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKP 244 (447)
T ss_pred hHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeee
Confidence 134567777766654332 2333444456788888887 4 489999999998755322111
Q ss_pred eEE-------------------------------ecc-----------------------------ceeecCCCCCeEEE
Q 001349 968 ATI-------------------------------QTG-----------------------------HRKLLGKANPVHAL 987 (1094)
Q Consensus 968 ~~~-------------------------------~~~-----------------------------~~~~~~h~~~V~sl 987 (1094)
... +.+ ...+......+.-+
T Consensus 245 f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~l 324 (447)
T KOG4497|consen 245 FGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKL 324 (447)
T ss_pred hhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccccccee
Confidence 100 000 00011112346788
Q ss_pred EEeCCccEEEEEECC-CCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCC
Q 001349 988 QVHNGLVYTASTSLD-GAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTS 1064 (1094)
Q Consensus 988 ~fs~~~~~las~s~D-g~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~ 1064 (1094)
+|++|..|+++-... .+.+-+||+++.+....+....+|....|+|. .++.+.....+++|.......+..-..|
T Consensus 325 afs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~G-- 402 (447)
T KOG4497|consen 325 AFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKG-- 402 (447)
T ss_pred eecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCC--
Confidence 999999998886421 14799999998777666667889999999998 6777777778999998776555554333
Q ss_pred cceEEEEEcCCCCEEEEEeCCCc
Q 001349 1065 GKVQCMALDDNEEFLVIGTSDGR 1087 (1094)
Q Consensus 1065 ~~I~~l~~Spdg~~L~sgs~DG~ 1087 (1094)
-.|..+.|..+|..++-.+.|..
T Consensus 403 F~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 403 FNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred ceeeeEEecCCCcEEEEEcCCce
Confidence 47999999999999999998863
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=8e-13 Score=156.56 Aligned_cols=231 Identities=13% Similarity=0.067 Sum_probs=156.2
Q ss_pred CCCeEEEeCC-cceeecccCCCcEEEEEEeCC--EEEEEECC---CeEEEEecCCCcceeEEEecccCCCeEEEEEecCC
Q 001349 794 DSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSD---GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSG 867 (1094)
Q Consensus 794 dg~I~vWd~~-~~~~~~~~h~~~V~~l~fspd--~LaSgs~D---g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg 867 (1094)
+..|.+||.+ .....+..|...+.+..|+|| .|+.++.+ ..|++||+.++....+..+.+|. ..++|+|||
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPDG 259 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFSPDG 259 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeECCCC
Confidence 4689999987 334556778889999999997 67666543 47999999988544555555554 468999999
Q ss_pred CEEEEEe-CCCcEEEE--ECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEe
Q 001349 868 EMLYSGS-LDKTARVW--SIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV 944 (1094)
Q Consensus 868 ~~LaSgs-~DgtI~vW--di~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s 944 (1094)
+.|+.++ .+|.+.|| |+.++....+. .+...+.... |+|||+.++
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~~~~~lt--~~~~~~~~~~-------wSpDG~~i~----------------------- 307 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGGTPSQLT--SGAGNNTEPS-------WSPDGQSIL----------------------- 307 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCCCeEeec--cCCCCcCCEE-------ECCCCCEEE-----------------------
Confidence 9888765 68876655 66666543332 2233333444 899998642
Q ss_pred CCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCC
Q 001349 945 QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLS 1024 (1094)
Q Consensus 945 ~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~ 1024 (1094)
+++..+|..++|++....... ..+ ++.. ....|+|++.+++..+.+ .+.+||+.++.......+ .
T Consensus 308 ----f~s~~~g~~~I~~~~~~~~~~-----~~l-~~~~--~~~~~SpDG~~ia~~~~~--~i~~~Dl~~g~~~~lt~~-~ 372 (429)
T PRK01742 308 ----FTSDRSGSPQVYRMSASGGGA-----SLV-GGRG--YSAQISADGKTLVMINGD--NVVKQDLTSGSTEVLSST-F 372 (429)
T ss_pred ----EEECCCCCceEEEEECCCCCe-----EEe-cCCC--CCccCCCCCCEEEEEcCC--CEEEEECCCCCeEEecCC-C
Confidence 333456677777654322111 111 2222 356789999998887765 466799988875432222 2
Q ss_pred CEEEEEEeCC--EEEEEEcCCeEEEEEC--CCCcEEEEecccCCcceEEEEEcCC
Q 001349 1025 EVRAMVVSSE--LVYLGCKGGTVEIWDQ--KRQIRIETLQTGTSGKVQCMALDDN 1075 (1094)
Q Consensus 1025 ~v~~l~~spd--~l~sgs~dg~I~vwd~--~t~~~~~~l~~~h~~~I~~l~~Spd 1075 (1094)
....+.|+|| +++.++.+|.+.+|++ .+|.....+ .+|.+.+...+|||-
T Consensus 373 ~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l-~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 373 LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL-PGSDGQVKFPAWSPY 426 (429)
T ss_pred CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEc-cCCCCCCCCcccCCC
Confidence 3456789998 7888888888888875 357778888 478888999999984
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-12 Score=136.87 Aligned_cols=243 Identities=18% Similarity=0.253 Sum_probs=169.6
Q ss_pred EEEEEEeCC--EEEEEECCCeEEEEecCCCcc----------eeEEEec-ccCCCeEEEEEe-------cCCCEEEEEeC
Q 001349 816 VLSIACFRD--KIFSGHSDGTIKVWTGRGSIL----------HLIQQIR-EHTKAVTGLAIL-------QSGEMLYSGSL 875 (1094)
Q Consensus 816 V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~----------~~~~~l~-~H~~~V~sv~fs-------pdg~~LaSgs~ 875 (1094)
...+.|+|| .|.+-+.|..+++|++...-. ....+++ .....|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 346789998 899999999999998752100 0001111 123456777774 67789999999
Q ss_pred CCcEEEEECCCCceEEEE-ecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcC
Q 001349 876 DKTARVWSIGNEEIHCVQ-VHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQD 954 (1094)
Q Consensus 876 DgtI~vWdi~~~~~~~~~-~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~D 954 (1094)
|.-|++||.-+|++++.. ..++.+.+.... .++|+|||..| + ++..
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAh----sL~Fs~DGeql----------------------------f-aGyk 178 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAH----SLQFSPDGEQL----------------------------F-AGYK 178 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhhe----eEEecCCCCeE----------------------------e-eccc
Confidence 999999999999865533 233444433221 34588888753 3 4567
Q ss_pred CeEEEEEC-CCCceeEEeccc-eeecCCCCCeEEEEEeCCcc-EEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEE
Q 001349 955 GAIQEIDL-ATGTFATIQTGH-RKLLGKANPVHALQVHNGLV-YTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMV 1030 (1094)
Q Consensus 955 g~I~iwDl-~~~~~~~~~~~~-~~~~~h~~~V~sl~fs~~~~-~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~ 1030 (1094)
.+|++||+ +.|..-..+... ..-.+..+-|.+++|+|... .++.++.. ..+-||.-..+.++..+. |.+.|+.+.
T Consensus 179 rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~-q~~giy~~~~~~pl~llggh~gGvThL~ 257 (406)
T KOG2919|consen 179 RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYG-QRVGIYNDDGRRPLQLLGGHGGGVTHLQ 257 (406)
T ss_pred ceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeeccc-ceeeeEecCCCCceeeecccCCCeeeEE
Confidence 88999998 566543222211 11234457789999998766 56666554 588888888888888776 789999999
Q ss_pred EeCC--EEEEEE-cCCeEEEEECCC-CcEEEEecccCCc-ceEEE--EEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1031 VSSE--LVYLGC-KGGTVEIWDQKR-QIRIETLQTGTSG-KVQCM--ALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1031 ~spd--~l~sgs-~dg~I~vwd~~t-~~~~~~l~~~h~~-~I~~l--~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
|.++ .+++|+ .|-.|-.||++. ..++..+. .|.+ .-..| ...|+|++|++|+.||.|++||+
T Consensus 258 ~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~-rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdl 326 (406)
T KOG2919|consen 258 WCEDGNKLFSGARKDDKILCWDIRYSRDPVYALE-RHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDL 326 (406)
T ss_pred eccCcCeecccccCCCeEEEEeehhccchhhhhh-hhccCccceEEEecCCCCceeeccCCCccEEEEec
Confidence 9998 788887 478899999975 45666663 5544 33344 44689999999999999999997
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.9e-13 Score=146.67 Aligned_cols=206 Identities=19% Similarity=0.252 Sum_probs=155.6
Q ss_pred CEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCcccee
Q 001349 824 DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQN 903 (1094)
Q Consensus 824 d~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~ 903 (1094)
|.++.++.||.+.+-+-... ..+.+..|.+.|.+-.|+|||.-|+|++.||.|++|.-...- .........+|++
T Consensus 76 d~~~i~s~DGkf~il~k~~r---VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGML--RStl~Q~~~~v~c 150 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSAR---VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGML--RSTVVQNEESIRC 150 (737)
T ss_pred ceEEEEcCCceEEEecccch---hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchH--HHHHhhcCceeEE
Confidence 48899999999999876543 556778999999999999999999999999999999865531 1122234567777
Q ss_pred eeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCC
Q 001349 904 LAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANP 983 (1094)
Q Consensus 904 v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~ 983 (1094)
++ |.|+++.+ ++ +..+++.+=-+.....+ ..+..|.+-
T Consensus 151 ~~-------W~p~S~~v---------------------------l~--c~g~h~~IKpL~~n~k~------i~WkAHDGi 188 (737)
T KOG1524|consen 151 AR-------WAPNSNSI---------------------------VF--CQGGHISIKPLAANSKI------IRWRAHDGL 188 (737)
T ss_pred EE-------ECCCCCce---------------------------EE--ecCCeEEEeecccccce------eEEeccCcE
Confidence 77 66666542 22 23344555444433333 467789999
Q ss_pred eEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCCE-EEEEEcCCeEEEEECCCCcEEEEeccc
Q 001349 984 VHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSEL-VYLGCKGGTVEIWDQKRQIRIETLQTG 1062 (1094)
Q Consensus 984 V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd~-l~sgs~dg~I~vwd~~t~~~~~~l~~~ 1062 (1094)
|.++.|++...++++++.|- ..++||........+-.|..+|++++|.|+. ++.||. ++.+ +...
T Consensus 189 iL~~~W~~~s~lI~sgGED~-kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~~~~v~S~-nt~R------------~~~p 254 (737)
T KOG1524|consen 189 VLSLSWSTQSNIIASGGEDF-RFKIWDAQGANLFTSAAEEYAITSVAFNPEKDYLLWSY-NTAR------------FSSP 254 (737)
T ss_pred EEEeecCccccceeecCCce-eEEeecccCcccccCChhccceeeeeeccccceeeeee-eeee------------ecCC
Confidence 99999999999999999885 9999998655555555588999999999994 444443 3444 4445
Q ss_pred CCcceEEEEEcCCCCEEEEEeCCCcEEE
Q 001349 1063 TSGKVQCMALDDNEEFLVIGTSDGRIQA 1090 (1094)
Q Consensus 1063 h~~~I~~l~~Spdg~~L~sgs~DG~I~i 1090 (1094)
..+.|..++||+||..++.|+..|.+.+
T Consensus 255 ~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 255 RVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred CccceEEEEEcCCCceeeccccCceEEE
Confidence 6778999999999999999999998754
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.5e-13 Score=146.67 Aligned_cols=194 Identities=20% Similarity=0.292 Sum_probs=149.6
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCc
Q 001349 859 TGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYP 938 (1094)
Q Consensus 859 ~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v 938 (1094)
..++|+.+|..+++|+.||++|||++.+.. .......+...|.++. |+|||+.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~-t~l~e~~~~~eV~DL~-------FS~dgk~------------------- 200 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML-TILEEIAHHAEVKDLD-------FSPDGKF------------------- 200 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch-hhhhhHhhcCccccce-------eCCCCcE-------------------
Confidence 679999999999999999999999977653 3444556778899988 9999985
Q ss_pred eEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCc----cEEEEEECCCCEEEEEECCCC
Q 001349 939 KCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL----VYTASTSLDGAAVKMWSTSNY 1014 (1094)
Q Consensus 939 ~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~----~~las~s~Dg~~I~iwd~~~~ 1014 (1094)
|++-+.| ..++|+..+|..+....+ .........+.|+.+. .++++.-.+++.|+.||+..+
T Consensus 201 ---------lasig~d-~~~VW~~~~g~~~a~~t~----~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w 266 (398)
T KOG0771|consen 201 ---------LASIGAD-SARVWSVNTGAALARKTP----FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLW 266 (398)
T ss_pred ---------EEEecCC-ceEEEEeccCchhhhcCC----cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeee
Confidence 5666777 889999999966543221 2223345566676444 344544445557887776543
Q ss_pred eE---E---EEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCC
Q 001349 1015 NM---V---GSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDG 1086 (1094)
Q Consensus 1015 ~~---~---~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG 1086 (1094)
.- . +.+.....|++++++.| +++.|+.||.|-|++..+.+.++..+..|...|+.+.|+||.+++++.+.|.
T Consensus 267 ~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~ 346 (398)
T KOG0771|consen 267 SGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN 346 (398)
T ss_pred ccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC
Confidence 22 1 11224568999999998 8999999999999999999999999899999999999999999999999998
Q ss_pred cEEEEeC
Q 001349 1087 RIQAWGL 1093 (1094)
Q Consensus 1087 ~I~iWdl 1093 (1094)
++.+..+
T Consensus 347 ~~~v~~l 353 (398)
T KOG0771|consen 347 EAAVTKL 353 (398)
T ss_pred ceeEEEE
Confidence 8887654
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-12 Score=153.74 Aligned_cols=260 Identities=15% Similarity=0.243 Sum_probs=176.1
Q ss_pred CCCCeEEEeCCcceeecccCCCcEEEEEEeC--CEEEEEECCCeEEEEecCCCcceeEEEeccc---CCCeEEEEEec--
Q 001349 793 HDSSADFWNHRELVHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGSILHLIQQIREH---TKAVTGLAILQ-- 865 (1094)
Q Consensus 793 ~dg~I~vWd~~~~~~~~~~h~~~V~~l~fsp--d~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H---~~~V~sv~fsp-- 865 (1094)
.+..|..||.. ...+.......+.|+| +.+++++..-.|+|||.+.+ +.+..|..+ ...|+.+.+-.
T Consensus 1048 st~~i~~W~~~----~~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~--~~l~~F~n~~~~~t~Vs~l~liNe~ 1121 (1387)
T KOG1517|consen 1048 STNPIGNWDQK----FMTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKG--RLLNGFDNGAFPDTRVSDLELINEQ 1121 (1387)
T ss_pred ccccccchHHH----HHhcCCCCCceeeecCCCceeEEcCCcceEEEEecccC--ceeccccCCCCCCCccceeeeeccc
Confidence 34456778865 2233344667788887 48888888889999999988 566666543 35688888875
Q ss_pred CCCEEEEEeCCCcEEEEECCCCc---eEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEE
Q 001349 866 SGEMLYSGSLDKTARVWSIGNEE---IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLA 942 (1094)
Q Consensus 866 dg~~LaSgs~DgtI~vWdi~~~~---~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~ 942 (1094)
|..++++|+.||.||||+--... .+.+... ..+.++. ..+.|.. .-+.
T Consensus 1122 D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw---~~Ls~~~-------~~~r~~~-------------------~v~d 1172 (1387)
T KOG1517|consen 1122 DDALLLTASSDGVIRIWKDYADKWKKPELVTAW---SSLSDQL-------PGARGTG-------------------LVVD 1172 (1387)
T ss_pred chhheeeeccCceEEEecccccccCCceeEEee---ccccccC-------ccCCCCC-------------------eeee
Confidence 56799999999999999743321 1111110 0011110 1112211 1122
Q ss_pred Ee--CCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEe-CCccEEEEEECCCCEEEEEECCCCe---E
Q 001349 943 LV--QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVH-NGLVYTASTSLDGAAVKMWSTSNYN---M 1016 (1094)
Q Consensus 943 ~s--~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs-~~~~~las~s~Dg~~I~iwd~~~~~---~ 1016 (1094)
|. .|++++++.-..|++||........... .+....|+++.-+ ..+..++.|..|| .|++||.+... .
T Consensus 1173 WqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP-----~~s~t~vTaLS~~~~~gn~i~AGfaDG-svRvyD~R~a~~ds~ 1246 (1387)
T KOG1517|consen 1173 WQQQSGHLLVTGDVRSIRIWDAHKEQVVADIP-----YGSSTLVTALSADLVHGNIIAAGFADG-SVRVYDRRMAPPDSL 1246 (1387)
T ss_pred hhhhCCeEEecCCeeEEEEEecccceeEeecc-----cCCCccceeecccccCCceEEEeecCC-ceEEeecccCCcccc
Confidence 22 4678888888999999998877664322 2345678888775 4568888888887 99999998643 3
Q ss_pred EEEec-CCCC--EEEEEEeCC---EEEEEEcCCeEEEEECCCCcEEEEec-ccCC--c-ceEEEEEcCCCCEEEEEeCCC
Q 001349 1017 VGSLP-TLSE--VRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQ-TGTS--G-KVQCMALDDNEEFLVIGTSDG 1086 (1094)
Q Consensus 1017 ~~~~~-~~~~--v~~l~~spd---~l~sgs~dg~I~vwd~~t~~~~~~l~-~~h~--~-~I~~l~~Spdg~~L~sgs~DG 1086 (1094)
+...+ |... |..+.+.+. -+++|+.+|.|++||++.......+. ..|. | ..+++..+++...+++|+. +
T Consensus 1247 v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q 1325 (1387)
T KOG1517|consen 1247 VCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-Q 1325 (1387)
T ss_pred ceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-c
Confidence 44444 6555 888888875 49999999999999998742221111 1222 3 5999999999999999998 9
Q ss_pred cEEEEeCC
Q 001349 1087 RIQAWGLS 1094 (1094)
Q Consensus 1087 ~I~iWdls 1094 (1094)
.|+||++.
T Consensus 1326 ~ikIy~~~ 1333 (1387)
T KOG1517|consen 1326 LIKIYSLS 1333 (1387)
T ss_pred eEEEEecC
Confidence 99999974
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-11 Score=140.78 Aligned_cols=229 Identities=13% Similarity=0.154 Sum_probs=149.9
Q ss_pred EEEEECCCeEEEEecCC-CcceeEEEecccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECC-CCceEEEEecccCccce
Q 001349 826 IFSGHSDGTIKVWTGRG-SILHLIQQIREHTKAVTGLAILQSGEMLYSGS-LDKTARVWSIG-NEEIHCVQVHDIKDQIQ 902 (1094)
Q Consensus 826 LaSgs~Dg~I~vWd~~t-~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs-~DgtI~vWdi~-~~~~~~~~~~~~~~~V~ 902 (1094)
+++...|+.|++||+.+ +....+..+. +.+....++++|++++|++++ .++.|.+|+++ ++.+.............
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~ 83 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT 83 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence 34457799999999964 4445666664 446678899999999987765 47889999997 34433333322222233
Q ss_pred eeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCc-eeEEeccceeecCCC
Q 001349 903 NLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGT-FATIQTGHRKLLGKA 981 (1094)
Q Consensus 903 ~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~-~~~~~~~~~~~~~h~ 981 (1094)
. ++|+|+|+.+. ++...++.|.+||+.+.. ..... ..+ .+.
T Consensus 84 ~-------i~~~~~g~~l~---------------------------v~~~~~~~v~v~~~~~~g~~~~~~---~~~-~~~ 125 (330)
T PRK11028 84 H-------ISTDHQGRFLF---------------------------SASYNANCVSVSPLDKDGIPVAPI---QII-EGL 125 (330)
T ss_pred E-------EEECCCCCEEE---------------------------EEEcCCCeEEEEEECCCCCCCCce---eec-cCC
Confidence 3 44888887642 233347889999886422 11100 111 122
Q ss_pred CCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEE-------EecCCCCEEEEEEeCC--EEEEEEc-CCeEEEEECC
Q 001349 982 NPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVG-------SLPTLSEVRAMVVSSE--LVYLGCK-GGTVEIWDQK 1051 (1094)
Q Consensus 982 ~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~-------~~~~~~~v~~l~~spd--~l~sgs~-dg~I~vwd~~ 1051 (1094)
.....++++|++.++...+..++.|.+||+.+...+. ....+.....++|+|+ +++++.. +++|.+||+.
T Consensus 126 ~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 126 EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 3467788999998887666655699999997632221 2223455778999999 7777765 8999999997
Q ss_pred C--Cc--EEEEecc--c---CCcceEEEEEcCCCCEEEEEeC-CCcEEEEeC
Q 001349 1052 R--QI--RIETLQT--G---TSGKVQCMALDDNEEFLVIGTS-DGRIQAWGL 1093 (1094)
Q Consensus 1052 t--~~--~~~~l~~--~---h~~~I~~l~~Spdg~~L~sgs~-DG~I~iWdl 1093 (1094)
. ++ .+..+.. . +......+.|+|||++++++.. +++|.+|++
T Consensus 206 ~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 206 DPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSV 257 (330)
T ss_pred CCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence 3 32 3333321 0 1123346899999999998864 789999986
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-13 Score=152.73 Aligned_cols=141 Identities=17% Similarity=0.213 Sum_probs=113.3
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCC---------cceeecccCCCcEEEEEEeC---CEEEEEECCCeEEEEecCCCcc
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHR---------ELVHVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWTGRGSIL 845 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~---------~~~~~~~~h~~~V~~l~fsp---d~LaSgs~Dg~I~vWd~~t~~~ 845 (1094)
+.|-.||..+++.++.||.|++|.+. +...++..|...|+++.|+| |.|+++++|-+|++||+.++
T Consensus 633 l~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~-- 710 (1012)
T KOG1445|consen 633 LHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANA-- 710 (1012)
T ss_pred cccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhh--
Confidence 44556789999999999999999875 45577889999999999999 69999999999999999998
Q ss_pred eeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEe
Q 001349 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR 925 (1094)
Q Consensus 846 ~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~ 925 (1094)
+....+.+|++.|.+++|||||+.++|.+.||+|+||+.+.++..... .++++.. ....+.|..||+++++.+.
T Consensus 711 ~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~E---g~gpvgt---RgARi~wacdgr~viv~Gf 784 (1012)
T KOG1445|consen 711 KLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYE---GKGPVGT---RGARILWACDGRIVIVVGF 784 (1012)
T ss_pred hhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcccc---CCCCccC---cceeEEEEecCcEEEEecc
Confidence 677788999999999999999999999999999999999887522222 2223221 1223447778887655544
Q ss_pred C
Q 001349 926 N 926 (1094)
Q Consensus 926 ~ 926 (1094)
+
T Consensus 785 d 785 (1012)
T KOG1445|consen 785 D 785 (1012)
T ss_pred c
Confidence 4
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.6e-12 Score=136.00 Aligned_cols=193 Identities=17% Similarity=0.209 Sum_probs=144.8
Q ss_pred CEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEec--CCCEEEEEeCCCcEEEEECCCCceEEEEec-ccC-c
Q 001349 824 DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ--SGEMLYSGSLDKTARVWSIGNEEIHCVQVH-DIK-D 899 (1094)
Q Consensus 824 d~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fsp--dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~-~~~-~ 899 (1094)
..++++...|+|++||..++ ..+..+++|...++.+.|.. .+..+.+|+.||+|++||++.......... .+. .
T Consensus 41 ~~vav~lSngsv~lyd~~tg--~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG--QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred eeEEEEecCCeEEEEeccch--hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence 47899999999999999998 78999999999999999987 577899999999999999998642111111 111 1
Q ss_pred cceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEE----EcCCeEEEEECCCCce-eEEeccc
Q 001349 900 QIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCG----CQDGAIQEIDLATGTF-ATIQTGH 974 (1094)
Q Consensus 900 ~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sg----s~Dg~I~iwDl~~~~~-~~~~~~~ 974 (1094)
+..+++ ....++ .+++| ..|-.|.+||++..+. +.
T Consensus 119 ~f~~ld-------~nck~~----------------------------ii~~GtE~~~s~A~v~lwDvR~~qq~l~----- 158 (376)
T KOG1188|consen 119 PFICLD-------LNCKKN----------------------------IIACGTELTRSDASVVLWDVRSEQQLLR----- 158 (376)
T ss_pred cceEee-------ccCcCC----------------------------eEEeccccccCceEEEEEEeccccchhh-----
Confidence 112211 001111 23333 2466799999998775 32
Q ss_pred eeecCCCCCeEEEEEeC-CccEEEEEECCCCEEEEEECCCCe----EEEEecCCCCEEEEEEeCC---EEEEEEcCCeEE
Q 001349 975 RKLLGKANPVHALQVHN-GLVYTASTSLDGAAVKMWSTSNYN----MVGSLPTLSEVRAMVVSSE---LVYLGCKGGTVE 1046 (1094)
Q Consensus 975 ~~~~~h~~~V~sl~fs~-~~~~las~s~Dg~~I~iwd~~~~~----~~~~~~~~~~v~~l~~spd---~l~sgs~dg~I~ 1046 (1094)
.-...|...|+++.|+| +...+++||.|| .|.+||+.... +...+.+.+.|..+.|..+ .+++-+..++..
T Consensus 159 ~~~eSH~DDVT~lrFHP~~pnlLlSGSvDG-LvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~ 237 (376)
T KOG1188|consen 159 QLNESHNDDVTQLRFHPSDPNLLLSGSVDG-LVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFA 237 (376)
T ss_pred hhhhhccCcceeEEecCCCCCeEEeecccc-eEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCcee
Confidence 23457999999999997 456889999997 99999997542 4566668888999999887 699999999999
Q ss_pred EEECCCCcEEEEe
Q 001349 1047 IWDQKRQIRIETL 1059 (1094)
Q Consensus 1047 vwd~~t~~~~~~l 1059 (1094)
+|+++.+.....+
T Consensus 238 ~~ele~~~~~~~~ 250 (376)
T KOG1188|consen 238 IYELEDGSEETWL 250 (376)
T ss_pred EEEccCCChhhcc
Confidence 9999988765554
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.7e-14 Score=161.06 Aligned_cols=238 Identities=18% Similarity=0.228 Sum_probs=176.1
Q ss_pred eeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 001349 806 VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWS 883 (1094)
Q Consensus 806 ~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWd 883 (1094)
+..+.+|...|+|+.|... ++++|+.|..|+||...+. .++....||.+.|+.++.+.+..+++++|.|..|++|.
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~--~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA--RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccch--hhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 4456799999999999875 9999999999999999998 89999999999999999999999999999999999999
Q ss_pred CCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECC
Q 001349 884 IGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA 963 (1094)
Q Consensus 884 i~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~ 963 (1094)
+.++.. .-....|.+.|++++ |+| ..+.+.||++++||.+
T Consensus 261 l~~~~p-vsvLrghtgavtaia-------fsP--------------------------------~~sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 261 LPDGAP-VSVLRGHTGAVTAIA-------FSP--------------------------------RASSSDDGTCRIWDAR 300 (1113)
T ss_pred cCCCch-HHHHhccccceeeec-------cCc--------------------------------cccCCCCCceEecccc
Confidence 998742 111223455555555 433 2256789999999988
Q ss_pred CCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC---EEEEEE
Q 001349 964 TGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE---LVYLGC 1040 (1094)
Q Consensus 964 ~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd---~l~sgs 1040 (1094)
-.-.+. .+....+.+ ...+.++.|..++.-+.+++.|+ .-..|.+..-.. +...+.-+..+.| +.+++-
T Consensus 301 ~~~~~y-~prp~~~~~-~~~~~s~~~~~~~~~f~Tgs~d~-ea~n~e~~~l~~-----~~~~lif~t~ssd~~~~~~~ar 372 (1113)
T KOG0644|consen 301 LEPRIY-VPRPLKFTE-KDLVDSILFENNGDRFLTGSRDG-EARNHEFEQLAW-----RSNLLIFVTRSSDLSSIVVTAR 372 (1113)
T ss_pred cccccc-CCCCCCccc-ccceeeeeccccccccccccCCc-ccccchhhHhhh-----hccceEEEeccccccccceeee
Confidence 211111 111111222 25677888888888889998886 666665532100 1111112222222 566777
Q ss_pred cCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCE-EEEEeCCCcEEEEeCC
Q 001349 1041 KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEF-LVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1041 ~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~-L~sgs~DG~I~iWdls 1094 (1094)
.+..+.+|++.+|...+.+ .+|...+..+.++|-+.. ..+++.||.+.|||+.
T Consensus 373 ~~~~~~vwnl~~g~l~H~l-~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~ 426 (1113)
T KOG0644|consen 373 NDHRLCVWNLYTGQLLHNL-MGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIW 426 (1113)
T ss_pred eeeEeeeeecccchhhhhh-cccccceeeeeecCCCcHhhhhccCCCceEeeecc
Confidence 7889999999999999988 699999999999997654 4589999999999973
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.7e-13 Score=147.89 Aligned_cols=287 Identities=15% Similarity=0.146 Sum_probs=202.6
Q ss_pred HHhhhccccccccccCcEEEEeeCCCCeEEEeCC---cceeecccCCCcEEEEEEeCC----EEEEEECCCeEEEEecC-
Q 001349 770 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD----KIFSGHSDGTIKVWTGR- 841 (1094)
Q Consensus 770 ~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~---~~~~~~~~h~~~V~~l~fspd----~LaSgs~Dg~I~vWd~~- 841 (1094)
..|...++..-|...|..+++||.|..|.+||+. .......+|...|..-.|.|. .+++++.||.|++=.+.
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~ 218 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILE 218 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecc
Confidence 3444555566677789999999999999999997 344556689889988888873 89999999999998754
Q ss_pred CCcceeEEEecccCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCceEEEEe-cccCccceeeeecCceEEEeeCCCe
Q 001349 842 GSILHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEEIHCVQV-HDIKDQIQNLAVSNSILCFIPQGAG 919 (1094)
Q Consensus 842 t~~~~~~~~l~~H~~~V~sv~fspd-g~~LaSgs~DgtI~vWdi~~~~~~~~~~-~~~~~~V~~v~~~~~~~~fspdg~~ 919 (1094)
++...-...+..|.+.|..++.-|+ ..-|.|++.|+.+.-.|++++....... .....+
T Consensus 219 t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~------------------- 279 (559)
T KOG1334|consen 219 TGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK------------------- 279 (559)
T ss_pred ccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCc-------------------
Confidence 3332335567789999999999995 5689999999999999998864111110 000000
Q ss_pred EEEEEeCCeEEEEcCCCCceEEEEeC---CEEEEEEcCCeEEEEECCCCcee------EEeccceeecCCCCCeEEEEEe
Q 001349 920 IKVHLRNGKTKLLNSSKYPKCLALVQ---GKVYCGCQDGAIQEIDLATGTFA------TIQTGHRKLLGKANPVHALQVH 990 (1094)
Q Consensus 920 l~~~~~~g~i~l~~~~~~v~~l~~s~---~~l~sgs~Dg~I~iwDl~~~~~~------~~~~~~~~~~~h~~~V~sl~fs 990 (1094)
..+ ....++..| +.+++|+.|-.+++||.+.-... ..+.++.-.......|++++|+
T Consensus 280 -------~~v-------~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ys 345 (559)
T KOG1334|consen 280 -------ERV-------GLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYS 345 (559)
T ss_pred -------cce-------eeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEec
Confidence 000 112333332 46899999999999998753322 1122222222334579999998
Q ss_pred -CCccEEEEEECCCCEEEEEECCC--C----------eEEEE-ec-C--CCCEEEEEEeC-C--EEEEEEcCCeEEEEEC
Q 001349 991 -NGLVYTASTSLDGAAVKMWSTSN--Y----------NMVGS-LP-T--LSEVRAMVVSS-E--LVYLGCKGGTVEIWDQ 1050 (1094)
Q Consensus 991 -~~~~~las~s~Dg~~I~iwd~~~--~----------~~~~~-~~-~--~~~v~~l~~sp-d--~l~sgs~dg~I~vwd~ 1050 (1094)
..+.++++.+ |. .|+++.-.. | ..+.. ++ | ...|.++-|-+ . |+++||+=|.|.||+.
T Consensus 346 h~~sElLaSYn-De-~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K 423 (559)
T KOG1334|consen 346 HDGSELLASYN-DE-DIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDK 423 (559)
T ss_pred CCccceeeeec-cc-ceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEec
Confidence 5556666654 43 688885432 2 12222 33 2 24477777765 2 9999999999999999
Q ss_pred CCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1051 KRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1051 ~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
.+++.+..+. +-...|+|+.-+|--..|+++|-|.-|+||-
T Consensus 424 ~t~eii~~Me-gDr~VVNCLEpHP~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 424 KTGEIIRFME-GDRHVVNCLEPHPHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred chhHHHHHhh-cccceEeccCCCCCCchhhccCCccceeeec
Confidence 9999988885 4444899999999999999999999999995
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.8e-12 Score=149.91 Aligned_cols=210 Identities=12% Similarity=0.051 Sum_probs=142.3
Q ss_pred CCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCC---CcEEEEECCCCceEEEEecccCccceeeeecC
Q 001349 832 DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD---KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSN 908 (1094)
Q Consensus 832 Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D---gtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~ 908 (1094)
+..|.+||..+.. .+.+..|...+.+..|||||+.|+.++.+ ..|++||+.+++...+... .......
T Consensus 183 ~~~i~i~d~dg~~---~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~--~g~~~~~---- 253 (429)
T PRK01742 183 PYEVRVADYDGFN---QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF--RGHNGAP---- 253 (429)
T ss_pred eEEEEEECCCCCC---ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC--CCccCce----
Confidence 4789999998762 45567788899999999999999988754 3699999998764444322 2222233
Q ss_pred ceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeE--EEEECCCCceeEEeccceeecCCCCCeEE
Q 001349 909 SILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAI--QEIDLATGTFATIQTGHRKLLGKANPVHA 986 (1094)
Q Consensus 909 ~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I--~iwDl~~~~~~~~~~~~~~~~~h~~~V~s 986 (1094)
.|+|||+.++.. .+.+|.+ .+||+.++... .+..+...+..
T Consensus 254 ---~wSPDG~~La~~---------------------------~~~~g~~~Iy~~d~~~~~~~-------~lt~~~~~~~~ 296 (429)
T PRK01742 254 ---AFSPDGSRLAFA---------------------------SSKDGVLNIYVMGANGGTPS-------QLTSGAGNNTE 296 (429)
T ss_pred ---eECCCCCEEEEE---------------------------EecCCcEEEEEEECCCCCeE-------eeccCCCCcCC
Confidence 499999875432 2345544 45576666543 33445566788
Q ss_pred EEEeCCccEEEEEECCCCEEEEEECCC-CeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccC
Q 001349 987 LQVHNGLVYTASTSLDGAAVKMWSTSN-YNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGT 1063 (1094)
Q Consensus 987 l~fs~~~~~las~s~Dg~~I~iwd~~~-~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h 1063 (1094)
..|+||+..++..+..++...||++.. +.....+.+.. ....|+|| +++.++.++ +.+||+.+++..... ..+
T Consensus 297 ~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt-~~~ 372 (429)
T PRK01742 297 PSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLS-STF 372 (429)
T ss_pred EEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEec-CCC
Confidence 999999998776664334778887643 22223333332 45778988 676666655 566999988754332 222
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1064 SGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1064 ~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
....+.|+|||++|+.++.+|.+.+|++
T Consensus 373 --~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 373 --LDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred --CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 3456789999999999999998888864
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-12 Score=142.57 Aligned_cols=201 Identities=19% Similarity=0.259 Sum_probs=139.6
Q ss_pred EEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 001349 817 LSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQV 894 (1094)
Q Consensus 817 ~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~ 894 (1094)
.+++|+++ .+++|+.||++|||++... ..+.....|.+.|.+++|+|||++|++.+.| ..+||++++|.......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~--~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM--LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc--hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 67788876 9999999999999998776 5677778899999999999999999999999 89999999983111111
Q ss_pred -cccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEecc
Q 001349 895 -HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTG 973 (1094)
Q Consensus 895 -~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~ 973 (1094)
.+.+.....+. |+.|+.. ..+++ .+.....+.|+.||+.....-.....
T Consensus 225 ~~~k~~~~~~cR-------F~~d~~~-------~~l~l----------------aa~~~~~~~v~~~~~~~w~~~~~l~~ 274 (398)
T KOG0771|consen 225 PFSKDEMFSSCR-------FSVDNAQ-------ETLRL----------------AASQFPGGGVRLCDISLWSGSNFLRL 274 (398)
T ss_pred Ccccchhhhhce-------ecccCCC-------ceEEE----------------EEecCCCCceeEEEeeeeccccccch
Confidence 11122222222 5555421 00000 11112223344444332211000011
Q ss_pred ceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec--CCCCEEEEEEeCC--EEEEEEcCCeEEEEE
Q 001349 974 HRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP--TLSEVRAMVVSSE--LVYLGCKGGTVEIWD 1049 (1094)
Q Consensus 974 ~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~--~~~~v~~l~~spd--~l~sgs~dg~I~vwd 1049 (1094)
.+.......|++++.+++|.+++.|+.|| .|-|++..+.+.++.++ |...|+.+.|+|| ++++.+.+..+.|..
T Consensus 275 -~~~~~~~~siSsl~VS~dGkf~AlGT~dG-sVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 275 -RKKIKRFKSISSLAVSDDGKFLALGTMDG-SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTK 352 (398)
T ss_pred -hhhhhccCcceeEEEcCCCcEEEEeccCC-cEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEE
Confidence 12222335799999999999999999997 99999999998888877 7889999999999 788888888888876
Q ss_pred CCC
Q 001349 1050 QKR 1052 (1094)
Q Consensus 1050 ~~t 1052 (1094)
+.-
T Consensus 353 l~v 355 (398)
T KOG0771|consen 353 LAV 355 (398)
T ss_pred Eee
Confidence 543
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-10 Score=124.56 Aligned_cols=226 Identities=10% Similarity=0.110 Sum_probs=156.9
Q ss_pred ccccCcEEEEeeCCCCeEEEeCCcceeec--ccCCCcEEEEEEeCCEEEEEECCC--eEEEEecCCCcceeEEEecccCC
Q 001349 781 LAFEMVKVLSNGHDSSADFWNHRELVHVD--SSENGKVLSIACFRDKIFSGHSDG--TIKVWTGRGSILHLIQQIREHTK 856 (1094)
Q Consensus 781 ~~~d~~~l~s~s~dg~I~vWd~~~~~~~~--~~h~~~V~~l~fspd~LaSgs~Dg--~I~vWd~~t~~~~~~~~l~~H~~ 856 (1094)
+..+...+..|+.||. ++|+........ ......|..+-|+..++|..+.+. .+++.+++.+ ..+..+. ...
T Consensus 13 ~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~--~~ICe~~-fpt 88 (391)
T KOG2110|consen 13 FNQDSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKK--TTICEIF-FPT 88 (391)
T ss_pred eccceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccC--ceEEEEe-cCC
Confidence 4445666777777764 567766322211 122346778889999766666544 4899999887 4444443 456
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCc-eEEEEec-ccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC
Q 001349 857 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEE-IHCVQVH-DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS 934 (1094)
Q Consensus 857 ~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~-~~~~~~~-~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~ 934 (1094)
.|.+|.++. +.|+++=.+ .|+|||+++.+ ++.+... ++...+.++. +++.+.+++.-
T Consensus 89 ~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS-------~n~~n~ylAyp----------- 147 (391)
T KOG2110|consen 89 SILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALS-------PNNANCYLAYP----------- 147 (391)
T ss_pred ceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeec-------cCCCCceEEec-----------
Confidence 799999964 456555544 49999999864 2222222 1222222222 22222233211
Q ss_pred CCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCC
Q 001349 935 SKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY 1014 (1094)
Q Consensus 935 ~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~ 1014 (1094)
.....|.|.+||..+-+.. ..+..|.+++-+++|+++|.++|+++..|..||+|.+.+|
T Consensus 148 ---------------~s~t~GdV~l~d~~nl~~v------~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G 206 (391)
T KOG2110|consen 148 ---------------GSTTSGDVVLFDTINLQPV------NTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG 206 (391)
T ss_pred ---------------CCCCCceEEEEEcccceee------eEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc
Confidence 1223689999999887776 5677899999999999999999999999989999999999
Q ss_pred eEEEEecC---CCCEEEEEEeCC--EEEEEEcCCeEEEEECCC
Q 001349 1015 NMVGSLPT---LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKR 1052 (1094)
Q Consensus 1015 ~~~~~~~~---~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t 1052 (1094)
+.+..|+. ...|.+++|+++ ++.+.|..++|+||.+..
T Consensus 207 ~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 207 QKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred cEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 99999984 456899999999 888889999999998653
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.8e-12 Score=129.44 Aligned_cols=242 Identities=16% Similarity=0.180 Sum_probs=168.9
Q ss_pred CcEEEEEEeC----C-EEEEEEC----CCeEEEEecC--CCcceeEEEecccCCCeEEEEEecCC-----CEEEEEeCCC
Q 001349 814 GKVLSIACFR----D-KIFSGHS----DGTIKVWTGR--GSILHLIQQIREHTKAVTGLAILQSG-----EMLYSGSLDK 877 (1094)
Q Consensus 814 ~~V~~l~fsp----d-~LaSgs~----Dg~I~vWd~~--t~~~~~~~~l~~H~~~V~sv~fspdg-----~~LaSgs~Dg 877 (1094)
-.+.++.|+. + +|+.|+. .+.|.|-.+. +++.....+ ..|.-+++.+-|.|+. .+|||.|+
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~-fd~~YP~tK~~wiPd~~g~~pdlLATs~D-- 121 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN-FDHPYPVTKLMWIPDSKGVYPDLLATSSD-- 121 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC-CCCCCCccceEecCCccccCcchhhcccC--
Confidence 4567888883 2 8888873 4666665443 443222222 3689999999999975 35666553
Q ss_pred cEEEEECCCCc--eEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEe---CCEEEEEE
Q 001349 878 TARVWSIGNEE--IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV---QGKVYCGC 952 (1094)
Q Consensus 878 tI~vWdi~~~~--~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s---~~~l~sgs 952 (1094)
.+|+|.+...+ ..+.... +.+- --.....++++.|+ ++.|.+.+
T Consensus 122 ~LRlWri~~ee~~~~~~~~L------------------~~~k-------------ns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 122 FLRLWRIGDEESRVELQSVL------------------NNNK-------------NSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred eEEEEeccCcCCceehhhhh------------------ccCc-------------ccccCCcccccccccCCcceeEeec
Confidence 69999998532 1111100 0000 00112344455554 56799999
Q ss_pred cCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC-ccEEEEEECCCCEEEEEECCCCeEEEEec---C-CCCEE
Q 001349 953 QDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG-LVYTASTSLDGAAVKMWSTSNYNMVGSLP---T-LSEVR 1027 (1094)
Q Consensus 953 ~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~-~~~las~s~Dg~~I~iwd~~~~~~~~~~~---~-~~~v~ 1027 (1094)
-|-+..+||+.++..... ...+..|.+.|+.++|..+ ...+++.+.|| .||+||++....-..+. . ..+..
T Consensus 171 iDTTCTiWdie~~~~~~v---kTQLIAHDKEV~DIaf~~~s~~~FASvgaDG-SvRmFDLR~leHSTIIYE~p~~~~pLl 246 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTV---KTQLIAHDKEVYDIAFLKGSRDVFASVGADG-SVRMFDLRSLEHSTIIYEDPSPSTPLL 246 (364)
T ss_pred ccCeEEEEEEeeccccce---eeEEEecCcceeEEEeccCccceEEEecCCC-cEEEEEecccccceEEecCCCCCCcce
Confidence 999999999999733111 1467899999999999864 45788999997 99999999765443333 2 46678
Q ss_pred EEEEeCC---EEEEEE-cCCeEEEEECCCC-cEEEEecccCCcceEEEEEcCCC-CEEEEEeCCCcEEEEeCC
Q 001349 1028 AMVVSSE---LVYLGC-KGGTVEIWDQKRQ-IRIETLQTGTSGKVQCMALDDNE-EFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1028 ~l~~spd---~l~sgs-~dg~I~vwd~~t~-~~~~~l~~~h~~~I~~l~~Spdg-~~L~sgs~DG~I~iWdls 1094 (1094)
.++|++. ++++-. ....|.|.|++.. .++..+ .+|.+.|++++|.|.. ..|+|+|+|..+.|||+.
T Consensus 247 RLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L-~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 247 RLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL-RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQ 318 (364)
T ss_pred eeccCcCCchHHhhhhcCCceEEEEEecCCCcceehh-hcCcccccceEecCCCCceeeecCCcceEEEEecc
Confidence 8888764 677654 4467999999875 466777 6999999999999965 689999999999999984
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.9e-11 Score=141.33 Aligned_cols=267 Identities=16% Similarity=0.218 Sum_probs=186.2
Q ss_pred EEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCC---CEEEEEeCCCcEEEEECCCCceEEEE
Q 001349 818 SIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSG---EMLYSGSLDKTARVWSIGNEEIHCVQ 893 (1094)
Q Consensus 818 ~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg---~~LaSgs~DgtI~vWdi~~~~~~~~~ 893 (1094)
.-.|++| ..+.+..+..|.||...|+ .++..+.+|..+++++.+.|.. .++++++.||+|++||...+. .+.
T Consensus 21 ~avfSnD~k~l~~~~~~~V~VyS~~Tg--~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~--Llk 96 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCTGNFVKVYSTATG--ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGE--LLK 96 (792)
T ss_pred ccccccCCcEEEEeeCCEEEEEecchH--hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcE--EEE
Confidence 3457777 6666677789999999999 8899999999999999998853 477899999999999999885 333
Q ss_pred ecccCccceeeeecCc-----eEEE-eeCCCeEEE-EEe--CCeEEEEc-------------CCCCceEEEEeC-CEEEE
Q 001349 894 VHDIKDQIQNLAVSNS-----ILCF-IPQGAGIKV-HLR--NGKTKLLN-------------SSKYPKCLALVQ-GKVYC 950 (1094)
Q Consensus 894 ~~~~~~~V~~v~~~~~-----~~~f-spdg~~l~~-~~~--~g~i~l~~-------------~~~~v~~l~~s~-~~l~s 950 (1094)
......++..+...+. ...+ +-+...+.. ... .+...-+. ......++.+.+ +.+..
T Consensus 97 t~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~ 176 (792)
T KOG1963|consen 97 TFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKG 176 (792)
T ss_pred EEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEE
Confidence 3333344444332111 0011 111111111 000 01111000 011245666655 55777
Q ss_pred EEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCC--C--eEEEEec-CCCC
Q 001349 951 GCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN--Y--NMVGSLP-TLSE 1025 (1094)
Q Consensus 951 gs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~--~--~~~~~~~-~~~~ 1025 (1094)
...+..+++|+...+.. .......-..|...+++.++||++.+++++..|| .|.+|.--. . ...+.+. |+..
T Consensus 177 i~~~~~~~~~~v~~~~~--~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dG-rI~vw~d~~~~~~~~t~t~lHWH~~~ 253 (792)
T KOG1963|consen 177 IVHMCKIHIYFVPKHTK--HTSSRDITVHHTFNITCVALSPNERYLAAGDSDG-RILVWRDFGSSDDSETCTLLHWHHDE 253 (792)
T ss_pred EEEeeeEEEEEecccce--eeccchhhhhhcccceeEEeccccceEEEeccCC-cEEEEeccccccccccceEEEecccc
Confidence 77888899999887662 1222223345777899999999999999999997 799996432 1 1233344 8899
Q ss_pred EEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1026 VRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1026 v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
|.+++|+++ ++++|+..|.+-+|.+.+++ +.|...-.++|..+.+|||+.+.+....|+.|.+-..
T Consensus 254 V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~ 321 (792)
T KOG1963|consen 254 VNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKA 321 (792)
T ss_pred cceeEEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence 999999999 89999999999999999998 3443456779999999999999999999999987653
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.2e-12 Score=131.20 Aligned_cols=230 Identities=16% Similarity=0.178 Sum_probs=154.6
Q ss_pred CCCeEEEEecCCCcce-eEEEecccCCCeEEEEEec-CCCEEEEEeCC-------CcEEEEECCCCceEEEEecccCccc
Q 001349 831 SDGTIKVWTGRGSILH-LIQQIREHTKAVTGLAILQ-SGEMLYSGSLD-------KTARVWSIGNEEIHCVQVHDIKDQI 901 (1094)
Q Consensus 831 ~Dg~I~vWd~~t~~~~-~~~~l~~H~~~V~sv~fsp-dg~~LaSgs~D-------gtI~vWdi~~~~~~~~~~~~~~~~V 901 (1094)
.|+.|.+-++....-. .-..|..|.+.|+.++-+| +...|+|+..| ..+-||.+...... ....+.
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~-----S~~~tl 112 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ-----SNSSTL 112 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc-----cccchh
Confidence 4677888776643212 2345667889999999999 56677776542 23678888653211 000001
Q ss_pred eeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCC--EEEEEEcCCeEEEEECCCCcee-EEeccceeec
Q 001349 902 QNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQG--KVYCGCQDGAIQEIDLATGTFA-TIQTGHRKLL 978 (1094)
Q Consensus 902 ~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~--~l~sgs~Dg~I~iwDl~~~~~~-~~~~~~~~~~ 978 (1094)
..++ -.+. ..-+.+.|+.|.|+ ++++- .|..|.+|++..+..+ ..... ..-.
T Consensus 113 E~v~-------~Ldt----------------eavg~i~cvew~Pns~klasm-~dn~i~l~~l~ess~~vaev~s-s~s~ 167 (370)
T KOG1007|consen 113 ECVA-------SLDT----------------EAVGKINCVEWEPNSDKLASM-DDNNIVLWSLDESSKIVAEVLS-SESA 167 (370)
T ss_pred hHhh-------cCCH----------------HHhCceeeEEEcCCCCeeEEe-ccCceEEEEcccCcchheeecc-cccc
Confidence 1110 0000 00123445555442 24433 4889999999887663 21111 1122
Q ss_pred CCCCCeEEEEEeC--CccEEEEEECCCCEEEEEECCCCeEEEEec--CCCCEEEEEEeCC---EEEEEEcCCeEEEEECC
Q 001349 979 GKANPVHALQVHN--GLVYTASTSLDGAAVKMWSTSNYNMVGSLP--TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQK 1051 (1094)
Q Consensus 979 ~h~~~V~sl~fs~--~~~~las~s~Dg~~I~iwd~~~~~~~~~~~--~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~ 1051 (1094)
+|....++-+|+| ++..+++.+ ++++..||+++......+. |+..|..+.|+|+ +++++++||.|+|||.+
T Consensus 168 e~~~~ftsg~WspHHdgnqv~tt~--d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R 245 (370)
T KOG1007|consen 168 EMRHSFTSGAWSPHHDGNQVATTS--DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTR 245 (370)
T ss_pred cccceecccccCCCCccceEEEeC--CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEecc
Confidence 3556677888876 566666654 3599999999988888887 7888999999999 79999999999999987
Q ss_pred CCc-EEEEecccCCcceEEEEEcCCC-CEEEEEeCCCcEEEEeC
Q 001349 1052 RQI-RIETLQTGTSGKVQCMALDDNE-EFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1052 t~~-~~~~l~~~h~~~I~~l~~Spdg-~~L~sgs~DG~I~iWdl 1093 (1094)
..+ ++..+ .+|...|+++.|+|.. +++++||+|..|.+|..
T Consensus 246 ~tk~pv~el-~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca 288 (370)
T KOG1007|consen 246 KTKFPVQEL-PGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCA 288 (370)
T ss_pred CCCcccccc-CCCceEEEEEEecCccceEEEecCCCceeEEEec
Confidence 654 67777 6999999999999954 67889999999999853
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.9e-11 Score=145.73 Aligned_cols=273 Identities=15% Similarity=0.148 Sum_probs=172.0
Q ss_pred cccccCcEEEEeeCCCCeEEEeCCcc---------eeecccCCCcEEEEEEeC--CEEEEEECCCeEEEEecCCCc----
Q 001349 780 PLAFEMVKVLSNGHDSSADFWNHREL---------VHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGSI---- 844 (1094)
Q Consensus 780 ~~~~d~~~l~s~s~dg~I~vWd~~~~---------~~~~~~h~~~V~~l~fsp--d~LaSgs~Dg~I~vWd~~t~~---- 844 (1094)
....++.+++|||.||+|++|+..+. ..++....+.+.++.+.+ +.+|.|+.||.|++.+++...
T Consensus 1056 ~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~ 1135 (1431)
T KOG1240|consen 1056 VSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKR 1135 (1431)
T ss_pred ecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccc
Confidence 34446689999999999999998621 122222356677766655 599999999999999887521
Q ss_pred -ceeEEEecccC-CCe-EEEEEec-CCC-EEEEEeCCCcEEEEECCCCc-eEEEEecccCccceeeeecCceEEEeeCCC
Q 001349 845 -LHLIQQIREHT-KAV-TGLAILQ-SGE-MLYSGSLDKTARVWSIGNEE-IHCVQVHDIKDQIQNLAVSNSILCFIPQGA 918 (1094)
Q Consensus 845 -~~~~~~l~~H~-~~V-~sv~fsp-dg~-~LaSgs~DgtI~vWdi~~~~-~~~~~~~~~~~~V~~v~~~~~~~~fspdg~ 918 (1094)
..+.+....+. +.| ..-+|.. ++. .++.+..-+.|..||++... ....+.....+.|++++ .+|.+.
T Consensus 1136 ~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~-------idp~~~ 1208 (1431)
T KOG1240|consen 1136 VATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIV-------IDPWCN 1208 (1431)
T ss_pred eeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEE-------ecCCce
Confidence 11222222222 233 3334433 333 77888888999999998753 11222222233444444 444443
Q ss_pred eEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeC---CccE
Q 001349 919 GIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN---GLVY 995 (1094)
Q Consensus 919 ~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~---~~~~ 995 (1094)
.+++|+..|.+.+||++-+..+.... .++..+++.+..++ ...+
T Consensus 1209 ----------------------------WlviGts~G~l~lWDLRF~~~i~sw~-----~P~~~~i~~v~~~~~~~~~S~ 1255 (1431)
T KOG1240|consen 1209 ----------------------------WLVIGTSRGQLVLWDLRFRVPILSWE-----HPARAPIRHVWLCPTYPQESV 1255 (1431)
T ss_pred ----------------------------EEEEecCCceEEEEEeecCceeeccc-----CcccCCcceEEeeccCCCCce
Confidence 38889999999999999888774322 22346777777663 3345
Q ss_pred EEEEEC-CCCEEEEEECCCCeEEEEecCCCC---------------------EEEEEEeCC-EEEEEEcCCeEEEEECCC
Q 001349 996 TASTSL-DGAAVKMWSTSNYNMVGSLPTLSE---------------------VRAMVVSSE-LVYLGCKGGTVEIWDQKR 1052 (1094)
Q Consensus 996 las~s~-Dg~~I~iwd~~~~~~~~~~~~~~~---------------------v~~l~~spd-~l~sgs~dg~I~vwd~~t 1052 (1094)
.++++. ..+.|.+|++.+|.+...+..... +.+....++ ++++|+.|..|+.||...
T Consensus 1256 ~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1256 SVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred EEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 555443 335899999999877666642211 111112223 788999999999999654
Q ss_pred CcEE-----------------------------E-------------------Ee-------cccCCcceEEEEEcCC-C
Q 001349 1053 QIRI-----------------------------E-------------------TL-------QTGTSGKVQCMALDDN-E 1076 (1094)
Q Consensus 1053 ~~~~-----------------------------~-------------------~l-------~~~h~~~I~~l~~Spd-g 1076 (1094)
.... . .. ...|...|+++++-.. .
T Consensus 1336 p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q 1415 (1431)
T KOG1240|consen 1336 PEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQ 1415 (1431)
T ss_pred cccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCc
Confidence 2211 0 00 0235667888887543 3
Q ss_pred CEEEEEeCCCcEEEEe
Q 001349 1077 EFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1077 ~~L~sgs~DG~I~iWd 1092 (1094)
.+|++++.||.|+||.
T Consensus 1416 ~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1416 PLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred cEEEEecCCCeeeecC
Confidence 5899999999999994
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-11 Score=128.58 Aligned_cols=223 Identities=17% Similarity=0.160 Sum_probs=164.2
Q ss_pred CCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCc-ceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEC-CCC
Q 001349 812 ENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI-LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSI-GNE 887 (1094)
Q Consensus 812 h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~-~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi-~~~ 887 (1094)
-..+|+|.+|++| .+|.+.....|.||...+.. ++..+++..|...|+.|+|+|.++.|++++.|..-+||.. ..+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 3578999999998 89999999999999998876 7899999999999999999999999999999999999998 444
Q ss_pred ceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC--CEEEEEEcCCeEEEEECCCC
Q 001349 888 EIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ--GKVYCGCQDGAIQEIDLATG 965 (1094)
Q Consensus 888 ~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~ 965 (1094)
+.+ .++.+..++...+++.+++ +++++|+....|.+|-++..
T Consensus 89 ~Wk------------------------------------ptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~E 132 (361)
T KOG1523|consen 89 TWK------------------------------------PTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQE 132 (361)
T ss_pred eec------------------------------------cceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecc
Confidence 321 1222233344444555543 46888888888888877654
Q ss_pred ceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECC-----C-------------CeEEEEe-cCCCCE
Q 001349 966 TFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS-----N-------------YNMVGSL-PTLSEV 1026 (1094)
Q Consensus 966 ~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~-----~-------------~~~~~~~-~~~~~v 1026 (1094)
..-.... ..-..+...|+++.|+|++.+++.|+.|+ ..++|..- . |+++..+ ...+.+
T Consensus 133 NdWWVsK--hikkPirStv~sldWhpnnVLlaaGs~D~-k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwv 209 (361)
T KOG1523|consen 133 NDWWVSK--HIKKPIRSTVTSLDWHPNNVLLAAGSTDG-KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWV 209 (361)
T ss_pred cceehhh--hhCCccccceeeeeccCCcceecccccCc-ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCce
Confidence 4322111 12234567899999999999999999997 78888642 1 2223333 357889
Q ss_pred EEEEEeCC--EEEEEEcCCeEEEEECCCCc-EEEEecccCCcceEEEEEcC
Q 001349 1027 RAMVVSSE--LVYLGCKGGTVEIWDQKRQI-RIETLQTGTSGKVQCMALDD 1074 (1094)
Q Consensus 1027 ~~l~~spd--~l~sgs~dg~I~vwd~~t~~-~~~~l~~~h~~~I~~l~~Sp 1074 (1094)
..+.|+|+ .++-.+.|+++.+-|..... .+......+ -+..++.|-.
T Consensus 210 h~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~-lP~ls~~~is 259 (361)
T KOG1523|consen 210 HGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQ-LPLLSVSWIS 259 (361)
T ss_pred eeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhcc-CCceeeEeec
Confidence 99999976 78889999999999987664 344443333 4566666644
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.2e-11 Score=126.79 Aligned_cols=231 Identities=14% Similarity=0.082 Sum_probs=162.9
Q ss_pred cccccccccCcEEEEeeCCCCeEEEeCC-----cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEec-CCCccee
Q 001349 776 RKYSPLAFEMVKVLSNGHDSSADFWNHR-----ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTG-RGSILHL 847 (1094)
Q Consensus 776 ~~~~~~~~d~~~l~s~s~dg~I~vWd~~-----~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~-~t~~~~~ 847 (1094)
+..-++..|...++.+.....|.||... +..+++..|...|++|+|+|. .|++++.|..-+||.. .++.+++
T Consensus 13 itchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkp 92 (361)
T KOG1523|consen 13 ITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKP 92 (361)
T ss_pred eeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeecc
Confidence 3345677789999999999999999865 466888999999999999994 9999999999999998 7788888
Q ss_pred EEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEE---EEecccCccceeeeecCceEEEeeCCCeEEEEE
Q 001349 848 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHC---VQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHL 924 (1094)
Q Consensus 848 ~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~---~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~ 924 (1094)
.-.+..|...+++|.|+|.++.+++||.-..|.||-.+...-.- ....++++.|.++. |.|++-.
T Consensus 93 tlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sld-------WhpnnVL----- 160 (361)
T KOG1523|consen 93 TLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLD-------WHPNNVL----- 160 (361)
T ss_pred ceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeee-------ccCCcce-----
Confidence 88888999999999999999999999999999999988754111 11223455566665 5665554
Q ss_pred eCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECC-----CCceeEE------ec-cceeecCCCCCeEEEEEeCC
Q 001349 925 RNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA-----TGTFATI------QT-GHRKLLGKANPVHALQVHNG 992 (1094)
Q Consensus 925 ~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~-----~~~~~~~------~~-~~~~~~~h~~~V~sl~fs~~ 992 (1094)
+++|+.|+..+++..- ....... |. -...+....+.|..+.|+++
T Consensus 161 -----------------------laaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s 217 (361)
T KOG1523|consen 161 -----------------------LAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS 217 (361)
T ss_pred -----------------------ecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC
Confidence 4555555555555321 1000000 00 00112234578999999999
Q ss_pred ccEEEEEECCCCEEEEEECCCCe-EEEEec-CCCCEEEEEEeCC-EEEEEEcC
Q 001349 993 LVYTASTSLDGAAVKMWSTSNYN-MVGSLP-TLSEVRAMVVSSE-LVYLGCKG 1042 (1094)
Q Consensus 993 ~~~las~s~Dg~~I~iwd~~~~~-~~~~~~-~~~~v~~l~~spd-~l~sgs~d 1042 (1094)
|..++-.+.|+ ++.+-|..... .+.+.. ..-+..++.|-.+ .++.++.|
T Consensus 218 G~~lawv~Hds-~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~ 269 (361)
T KOG1523|consen 218 GNRLAWVGHDS-TVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAGYD 269 (361)
T ss_pred CCEeeEecCCC-ceEEeecCCCchhccchhhccCCceeeEeecCCceeecCCC
Confidence 99999999996 99998887654 333333 2345555555433 44444443
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.8e-11 Score=156.89 Aligned_cols=310 Identities=13% Similarity=0.114 Sum_probs=223.6
Q ss_pred chHhHHHHHHHHHHHHHhccc-hHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHH
Q 001349 282 LNESEMAVLQIERCWLEASME-LDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVE 360 (1094)
Q Consensus 282 l~~~e~a~~~i~~~~~~~~~~-~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~ 360 (1094)
.+.+++++..+.-++...++. ..|...+..|. +++.|-. .+.++++.++..|.++...++.++..|.. .|+++
T Consensus 418 ~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~----LV~LL~s-~s~~iQ~~A~~~L~nLa~~ndenr~aIie-aGaIP 491 (2102)
T PLN03200 418 ADVQEELIRALSSLCCGKGGLWEALGGREGVQL----LISLLGL-SSEQQQEYAVALLAILTDEVDESKWAITA-AGGIP 491 (2102)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHH----HHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHH
Confidence 355677766666665443332 33443344444 5555554 57889999999999997777778888885 56999
Q ss_pred HHHHHHhcC----hHHHHHHHHhcCCChHHHHH-h---hhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcC----
Q 001349 361 RIVALFKKG----LLEAVVLIDLLRPSTRTLIE-M---DMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGD---- 428 (1094)
Q Consensus 361 ~L~~lLk~g----~~~Aa~~l~~L~~~~~~~~~-~---~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~---- 428 (1094)
+|+.+|+++ ..+|+.+|.+|.-..+|+.. + +.+|+|+++|++++.+. +..|...|.+|+..
T Consensus 492 ~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~-------q~~Aa~AL~nLi~~~d~~ 564 (2102)
T PLN03200 492 PLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKG-------QEIAAKTLTKLVRTADAA 564 (2102)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHH-------HHHHHHHHHHHHhccchh
Confidence 999999887 78999999999876655433 3 44599999999884321 12222223333221
Q ss_pred -----------Ccccc--------------cccc---hhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcch
Q 001349 429 -----------SEESI--------------VSSI---ANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCR 480 (1094)
Q Consensus 429 -----------~~~~~--------------~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r 480 (1094)
.+... ...+ ...+...||++.|++.+++|+.+.|..|+.+|...+..+...+
T Consensus 565 ~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~ 644 (2102)
T PLN03200 565 TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLC 644 (2102)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHH
Confidence 11000 0000 0112246899999999999999999999999999999998988
Q ss_pred hhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHH
Q 001349 481 NSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGL 560 (1094)
Q Consensus 481 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~ 560 (1094)
..+.+.+.++|++.+|++++...+..+...|..|....+.. + ...+-+.|.+.. |+..|.....+-.-.++..
T Consensus 645 ~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~---q-~~~~v~~GaV~p---L~~LL~~~d~~v~e~Al~A 717 (2102)
T PLN03200 645 ESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKEN---R-KVSYAAEDAIKP---LIKLAKSSSIEVAEQAVCA 717 (2102)
T ss_pred HHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHH---H-HHHHHHcCCHHH---HHHHHhCCChHHHHHHHHH
Confidence 99999999999999999998888888888888877654422 1 222345777777 8888888777878888888
Q ss_pred HHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhccccccc
Q 001349 561 LLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQGRFTT 613 (1094)
Q Consensus 561 l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~g~~s~ 613 (1094)
|..+-.-.|-+.... +++++..|++-|++++. +.++.|+.||..|.-+|+.
T Consensus 718 LanLl~~~e~~~ei~-~~~~I~~Lv~lLr~G~~-~~k~~Aa~AL~~L~~~~~~ 768 (2102)
T PLN03200 718 LANLLSDPEVAAEAL-AEDIILPLTRVLREGTL-EGKRNAARALAQLLKHFPV 768 (2102)
T ss_pred HHHHHcCchHHHHHH-hcCcHHHHHHHHHhCCh-HHHHHHHHHHHHHHhCCCh
Confidence 888877655443333 68999999999999985 5599999999999977775
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-11 Score=133.99 Aligned_cols=174 Identities=21% Similarity=0.247 Sum_probs=122.9
Q ss_pred CCCcEEEEEEeCC---EEEEEECCCeEEEEecCCC-------cceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 001349 812 ENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGS-------ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 881 (1094)
Q Consensus 812 h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~-------~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~v 881 (1094)
...+|..+.|.++ .++||+.|..|++|-+..+ ....+..+..|+..|+.+.|+|+|..|+||+++|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 3568899999885 8999999999999977532 33456677899999999999999999999999999999
Q ss_pred EECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC--CEEEEEEcCCeEEE
Q 001349 882 WSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ--GKVYCGCQDGAIQE 959 (1094)
Q Consensus 882 Wdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~--~~l~sgs~Dg~I~i 959 (1094)
|....-... .... ... ..+ ..+++ ...+-.|...+..++|.+ ..+++|+.|..+++
T Consensus 92 Wk~~~~~~~-----~~d~---e~~-------~~k-e~w~v------~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l 149 (434)
T KOG1009|consen 92 WKQGDVRIF-----DADT---EAD-------LNK-EKWVV------KKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRL 149 (434)
T ss_pred EEecCcCCc-----cccc---hhh-------hCc-cceEE------EEEecccccchhhhhccCCCceeeeeeccceEEE
Confidence 987631000 0000 000 000 00000 001112344455555543 24889999999999
Q ss_pred EECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCC
Q 001349 960 IDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY 1014 (1094)
Q Consensus 960 wDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~ 1014 (1094)
||+..|... ..+.+|...+..++|.|-+.++++-+.|- ..+.+++...
T Consensus 150 ~Dv~~G~l~------~~~~dh~~yvqgvawDpl~qyv~s~s~dr-~~~~~~~~~~ 197 (434)
T KOG1009|consen 150 WDVHAGQLL------AILDDHEHYVQGVAWDPLNQYVASKSSDR-HPEGFSAKLK 197 (434)
T ss_pred EEeccceeE------eeccccccccceeecchhhhhhhhhccCc-ccceeeeeee
Confidence 999999988 55667888999999999999999988873 5666665443
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.8e-11 Score=125.34 Aligned_cols=234 Identities=15% Similarity=0.179 Sum_probs=155.1
Q ss_pred cEEEEeeCCCCeEEEeCCc--ceeecc-cCCCcEEEEEEeC-CEEEEEECCCeEEEEecCCCcceeEEEe----------
Q 001349 786 VKVLSNGHDSSADFWNHRE--LVHVDS-SENGKVLSIACFR-DKIFSGHSDGTIKVWTGRGSILHLIQQI---------- 851 (1094)
Q Consensus 786 ~~l~s~s~dg~I~vWd~~~--~~~~~~-~h~~~V~~l~fsp-d~LaSgs~Dg~I~vWd~~t~~~~~~~~l---------- 851 (1094)
.++.+|...|.|++|++.+ ....+. .|...|+.+.--| +.+.+-+.|+.+.+|++..+....++.+
T Consensus 26 ~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrf 105 (323)
T KOG0322|consen 26 ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRF 105 (323)
T ss_pred hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEccCcceEEEeeeeccccccccc
Confidence 4689999999999999873 334444 5678899998888 5999999999999999876322111111
Q ss_pred -----------------------------------------cccCCCeEEEEEec-CCC--EEEEEeCCCcEEEEECCCC
Q 001349 852 -----------------------------------------REHTKAVTGLAILQ-SGE--MLYSGSLDKTARVWSIGNE 887 (1094)
Q Consensus 852 -----------------------------------------~~H~~~V~sv~fsp-dg~--~LaSgs~DgtI~vWdi~~~ 887 (1094)
.+..+.|.+..+.. ++. +++.|-.+|.|-+||+.++
T Consensus 106 Sl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~ 185 (323)
T KOG0322|consen 106 SLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTG 185 (323)
T ss_pred eeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCC
Confidence 01123344444322 222 4566777899999999886
Q ss_pred ceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC--CEEEEEEcCCeEEEEECCCC
Q 001349 888 EIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ--GKVYCGCQDGAIQEIDLATG 965 (1094)
Q Consensus 888 ~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~ 965 (1094)
. +.+...... + + .+ ..-.+...+.++.+.+ +.=++|+.+..+..|.+...
T Consensus 186 ~-~~~~~~~~~-k---v--------~~---------------~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s 237 (323)
T KOG0322|consen 186 D-KIIQLPQSS-K---V--------ES---------------PNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHS 237 (323)
T ss_pred c-eeecccccc-c---c--------cc---------------chhhccCcceeeeechhhcCCcCCCccccceeeeeccc
Confidence 3 111111000 0 0 00 0001223334444432 22356777777888877643
Q ss_pred ceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcC
Q 001349 966 TFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKG 1042 (1094)
Q Consensus 966 ~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~d 1042 (1094)
....... ....-....|..+.+-||+..+++++.|+ .||+|+.++..++..++ |...|++++|+|+ .+++++.|
T Consensus 238 ~gslq~~--~e~~lknpGv~gvrIRpD~KIlATAGWD~-RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD 314 (323)
T KOG0322|consen 238 TGSLQIR--KEITLKNPGVSGVRIRPDGKILATAGWDH-RIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKD 314 (323)
T ss_pred cCccccc--ceEEecCCCccceEEccCCcEEeecccCC-cEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCC
Confidence 2211111 11122234678889999999999999997 99999999999999888 8899999999999 89999999
Q ss_pred CeEEEEEC
Q 001349 1043 GTVEIWDQ 1050 (1094)
Q Consensus 1043 g~I~vwd~ 1050 (1094)
++|.+|++
T Consensus 315 ~rISLWkL 322 (323)
T KOG0322|consen 315 ARISLWKL 322 (323)
T ss_pred ceEEeeec
Confidence 99999986
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.3e-11 Score=127.77 Aligned_cols=244 Identities=14% Similarity=0.126 Sum_probs=164.0
Q ss_pred eecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCC----cceeEEEecc-cCCCeEEEEEecCCCEEEEEeCCCcE
Q 001349 807 HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS----ILHLIQQIRE-HTKAVTGLAILQSGEMLYSGSLDKTA 879 (1094)
Q Consensus 807 ~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~----~~~~~~~l~~-H~~~V~sv~fspdg~~LaSgs~DgtI 879 (1094)
.-+.+|.+.|.++.|+.+ +|++|+.|..+++|++..- ..+++..... |...|.|++|.....++++|+.+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 445689999999999986 9999999999999998632 1245554443 45899999999989999999999999
Q ss_pred EEEECCCCceEEEEecc---cCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCe
Q 001349 880 RVWSIGNEEIHCVQVHD---IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGA 956 (1094)
Q Consensus 880 ~vWdi~~~~~~~~~~~~---~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~ 956 (1094)
...|+.+.+ .+.+.. ..+.|+.+. .+|. ++.+++.+.++.
T Consensus 130 I~HDiEt~q--si~V~~~~~~~~~VY~m~-------~~P~----------------------------DN~~~~~t~~~~ 172 (609)
T KOG4227|consen 130 IKHDIETKQ--SIYVANENNNRGDVYHMD-------QHPT----------------------------DNTLIVVTRAKL 172 (609)
T ss_pred Eeeecccce--eeeeecccCcccceeecc-------cCCC----------------------------CceEEEEecCce
Confidence 999999864 222222 233455544 3332 245888899999
Q ss_pred EEEEECCCCc-eeEEeccceeecCCCCCeEEEEEeCCcc-EEEEEECCCCEEEEEECCCCeE-EEEec------C-CCCE
Q 001349 957 IQEIDLATGT-FATIQTGHRKLLGKANPVHALQVHNGLV-YTASTSLDGAAVKMWSTSNYNM-VGSLP------T-LSEV 1026 (1094)
Q Consensus 957 I~iwDl~~~~-~~~~~~~~~~~~~h~~~V~sl~fs~~~~-~las~s~Dg~~I~iwd~~~~~~-~~~~~------~-~~~v 1026 (1094)
|.+||.+... .... ..........+++.|+|... ++++.+..+ -+-+||.+.... +.... . ...-
T Consensus 173 V~~~D~Rd~~~~~~~----~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~-G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~ 247 (609)
T KOG4227|consen 173 VSFIDNRDRQNPISL----VLPANSGKNFYTAEFHPETPALILVNSETG-GPNVFDRRMQARPVYQRSMFKGLPQENTEW 247 (609)
T ss_pred EEEEeccCCCCCCce----eeecCCCccceeeeecCCCceeEEeccccC-CCCceeeccccchHHhhhccccCcccchhh
Confidence 9999998765 2211 11223345678899998655 444444444 699999986432 11111 1 1223
Q ss_pred EEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCc-------ceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1027 RAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSG-------KVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1027 ~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~-------~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
.++.|+|+ .+.+--....-.+||+.+..+. .++..|.. .+.+++|--|. .+++|+.+-.|++|.+.
T Consensus 248 M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~-V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP 322 (609)
T KOG4227|consen 248 MGSLWSPSGNQFMSIRRGKCPLYFDFISQRCF-VLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLP 322 (609)
T ss_pred hheeeCCCCCeehhhhccCCCEEeeeecccce-eEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecC
Confidence 56778876 4544444444567787765432 33333322 57788887554 59999999999999873
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.5e-11 Score=139.75 Aligned_cols=224 Identities=15% Similarity=0.161 Sum_probs=146.8
Q ss_pred CCeEEEEecCCCcceeEEEecccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCceE-----EEEecccCccceeee
Q 001349 832 DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIH-----CVQVHDIKDQIQNLA 905 (1094)
Q Consensus 832 Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~~-----~~~~~~~~~~V~~v~ 905 (1094)
++.+.||++... ..+-..+ .-...|+++.|+| +.++++.|+.+|.|.+||++.+... +.....|..++..+.
T Consensus 221 ~~~~~vW~~~~p-~~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vv 298 (555)
T KOG1587|consen 221 DGVLLVWSLKNP-NTPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVV 298 (555)
T ss_pred CceEEEEecCCC-CCceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEE
Confidence 358999999876 2344444 3577899999999 7889999999999999999987521 122223344444433
Q ss_pred ecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEE-eccceee-----cC
Q 001349 906 VSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATI-QTGHRKL-----LG 979 (1094)
Q Consensus 906 ~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~-~~~~~~~-----~~ 979 (1094)
|..+- .+..+++++.||.|..|+++.-..... ....... ..
T Consensus 299 -------W~~~~--------------------------~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~ 345 (555)
T KOG1587|consen 299 -------WLQNE--------------------------HNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSS 345 (555)
T ss_pred -------EeccC--------------------------CCCceEEEecCCcEeeeeccccccchhhcccccccccccccc
Confidence 11100 112489999999999998875443211 0000001 12
Q ss_pred CCCCeEEEEEeCCc-cEEEEEECCCCEEEEEECCC---Ce-----EE-EEecCCCCEEEEEEeCC---EEEEEEcCCeEE
Q 001349 980 KANPVHALQVHNGL-VYTASTSLDGAAVKMWSTSN---YN-----MV-GSLPTLSEVRAMVVSSE---LVYLGCKGGTVE 1046 (1094)
Q Consensus 980 h~~~V~sl~fs~~~-~~las~s~Dg~~I~iwd~~~---~~-----~~-~~~~~~~~v~~l~~spd---~l~sgs~dg~I~ 1046 (1094)
....++++.|.+.. ..++.|+.+| .|.--+... .. .. ....|.+.|.++.++|= .+.+++ |.+|+
T Consensus 346 ~~~~~t~~~F~~~~p~~FiVGTe~G-~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vr 423 (555)
T KOG1587|consen 346 KAVGATSLKFEPTDPNHFIVGTEEG-KVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVR 423 (555)
T ss_pred cccceeeEeeccCCCceEEEEcCCc-EEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeE
Confidence 23468899997543 3445555555 665523222 21 12 12237889999998874 444444 99999
Q ss_pred EEECC-CCcEEEEecccCCcceEEEEEcCCCC-EEEEEeCCCcEEEEeC
Q 001349 1047 IWDQK-RQIRIETLQTGTSGKVQCMALDDNEE-FLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1047 vwd~~-t~~~~~~l~~~h~~~I~~l~~Spdg~-~L~sgs~DG~I~iWdl 1093 (1094)
||.-. ...++..+. .+...|++++|||... .++++..||+|.+|||
T Consensus 424 iWs~~~~~~Pl~~~~-~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDL 471 (555)
T KOG1587|consen 424 IWSEDVIASPLLSLD-SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDL 471 (555)
T ss_pred eccccCCCCcchhhh-hccceeeeeEEcCcCceEEEEEcCCCceehhhh
Confidence 99987 666777773 5677799999999774 5678888999999997
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.1e-12 Score=138.99 Aligned_cols=259 Identities=17% Similarity=0.249 Sum_probs=189.4
Q ss_pred ccccCcEEEEeeCCCCeEEEeCCcce-eecccCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEecccCCCe
Q 001349 781 LAFEMVKVLSNGHDSSADFWNHRELV-HVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAV 858 (1094)
Q Consensus 781 ~~~d~~~l~s~s~dg~I~vWd~~~~~-~~~~~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V 858 (1094)
+.-+|..++.|+..|.+-.+|+.+.. .....-...|.++.|..+ .+++.....-++|||-.+- .++.++.| ..|
T Consensus 137 ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~Gt---ElHClk~~-~~v 212 (545)
T KOG1272|consen 137 YTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGT---ELHCLKRH-IRV 212 (545)
T ss_pred ecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCc---EEeehhhc-Cch
Confidence 44479999999999999999998433 222233577899999876 5555566788999997664 55556555 468
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCc
Q 001349 859 TGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYP 938 (1094)
Q Consensus 859 ~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v 938 (1094)
..+.|-|..-+|++++..|.++--|+.+|++.. ......+.+..+. -.|-
T Consensus 213 ~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa-~~~t~~G~~~vm~-------qNP~---------------------- 262 (545)
T KOG1272|consen 213 ARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVA-SIRTGAGRTDVMK-------QNPY---------------------- 262 (545)
T ss_pred hhhcccchhheeeecccCCceEEEeechhhhhH-HHHccCCccchhh-------cCCc----------------------
Confidence 999999999999999999999999999985211 0001111222221 1111
Q ss_pred eEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEE
Q 001349 939 KCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVG 1018 (1094)
Q Consensus 939 ~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~ 1018 (1094)
+..+-+|..+|+|.+|.....+++ .++..|.++|.+++++++|.|+++++.|. .++|||+++...+.
T Consensus 263 ------NaVih~GhsnGtVSlWSP~skePL------vKiLcH~g~V~siAv~~~G~YMaTtG~Dr-~~kIWDlR~~~ql~ 329 (545)
T KOG1272|consen 263 ------NAVIHLGHSNGTVSLWSPNSKEPL------VKILCHRGPVSSIAVDRGGRYMATTGLDR-KVKIWDLRNFYQLH 329 (545)
T ss_pred ------cceEEEcCCCceEEecCCCCcchH------HHHHhcCCCcceEEECCCCcEEeeccccc-ceeEeeeccccccc
Confidence 123667889999999999988877 57788999999999999999999999995 99999999988777
Q ss_pred EecCCCCEEEEEEeCCEEEEEEcCCeEEEEE-CCCC--cEEEE-ecccCCcceEEEEEcCCCCEEEEEeCCC
Q 001349 1019 SLPTLSEVRAMVVSSELVYLGCKGGTVEIWD-QKRQ--IRIET-LQTGTSGKVQCMALDDNEEFLVIGTSDG 1086 (1094)
Q Consensus 1019 ~~~~~~~v~~l~~spd~l~sgs~dg~I~vwd-~~t~--~~~~~-l~~~h~~~I~~l~~Spdg~~L~sgs~DG 1086 (1094)
++........+++|...+++.+....|.||. .-.+ ..-.- +...-.+.|.++.|.|-...|-.|...|
T Consensus 330 t~~tp~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 330 TYRTPHPASNLSLSQKGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred eeecCCCccccccccccceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 7777777889999999877788888899995 2221 11111 1111234899999999777776665555
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.9e-10 Score=131.95 Aligned_cols=212 Identities=12% Similarity=0.066 Sum_probs=142.5
Q ss_pred CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeC---CCcEEEEECCCCceEEEEecccCccceeeeecCc
Q 001349 833 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSL---DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNS 909 (1094)
Q Consensus 833 g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~---DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~ 909 (1094)
..|.+||..+. ..+.+..|...+.+..|+|||+.|+..+. +..|.+||+.+++...+.. ....+....
T Consensus 182 ~~l~~~d~dg~---~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~--~~g~~~~~~---- 252 (435)
T PRK05137 182 KRLAIMDQDGA---NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN--FPGMTFAPR---- 252 (435)
T ss_pred eEEEEECCCCC---CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec--CCCcccCcE----
Confidence 47889998765 34556678889999999999999888764 4689999999886443332 233344444
Q ss_pred eEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCC--eEEEEECCCCceeEEeccceeecCCCCCeEEE
Q 001349 910 ILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDG--AIQEIDLATGTFATIQTGHRKLLGKANPVHAL 987 (1094)
Q Consensus 910 ~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg--~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl 987 (1094)
|+|||+.++. +.+.++ .|.+||+.++... .+..+.......
T Consensus 253 ---~SPDG~~la~---------------------------~~~~~g~~~Iy~~d~~~~~~~-------~Lt~~~~~~~~~ 295 (435)
T PRK05137 253 ---FSPDGRKVVM---------------------------SLSQGGNTDIYTMDLRSGTTT-------RLTDSPAIDTSP 295 (435)
T ss_pred ---ECCCCCEEEE---------------------------EEecCCCceEEEEECCCCceE-------EccCCCCccCce
Confidence 9999987543 233333 4777898887653 233344456678
Q ss_pred EEeCCccEEEEEECCC--CEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcC---CeEEEEECCCCcEEEEec
Q 001349 988 QVHNGLVYTASTSLDG--AAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKG---GTVEIWDQKRQIRIETLQ 1060 (1094)
Q Consensus 988 ~fs~~~~~las~s~Dg--~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~d---g~I~vwd~~t~~~~~~l~ 1060 (1094)
.|+||+..++..+..+ ..|.+||+.++.......+...+....|+|| .++..+.+ ..|.+||..++.. ..+.
T Consensus 296 ~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt 374 (435)
T PRK05137 296 SYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT 374 (435)
T ss_pred eEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc
Confidence 9999998887766432 2688889876655443334555677889998 55554432 4688899866543 4443
Q ss_pred ccCCcceEEEEEcCCCCEEEEEeCC------CcEEEEeC
Q 001349 1061 TGTSGKVQCMALDDNEEFLVIGTSD------GRIQAWGL 1093 (1094)
Q Consensus 1061 ~~h~~~I~~l~~Spdg~~L~sgs~D------G~I~iWdl 1093 (1094)
.+ ..+....|+|||+.|+..+.+ ..+.++|+
T Consensus 375 ~~--~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 375 SG--FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred CC--CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence 22 357788999999988765543 24666665
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-09 Score=125.62 Aligned_cols=293 Identities=15% Similarity=0.210 Sum_probs=175.3
Q ss_pred EEEEeeCCCCeEEEeCCc--ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEE
Q 001349 787 KVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLA 862 (1094)
Q Consensus 787 ~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~ 862 (1094)
.+++-..++.|.+.|..+ ....+..+...-..+.|+|| ++++.+.||.|.+||+.++ +.+.+++.. ....+++
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~--~~v~~i~~G-~~~~~i~ 84 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG--KVVATIKVG-GNPRGIA 84 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS--SEEEEEE-S-SEEEEEE
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc--cEEEEEecC-CCcceEE
Confidence 446677789999999873 44445444444455778986 8888899999999999999 688888654 4467899
Q ss_pred EecCCCEEEEEe-CCCcEEEEECCCCce-EEEEeccc-----CccceeeeecCceEEEeeCCCeEEEEEeC-CeEEEEc-
Q 001349 863 ILQSGEMLYSGS-LDKTARVWSIGNEEI-HCVQVHDI-----KDQIQNLAVSNSILCFIPQGAGIKVHLRN-GKTKLLN- 933 (1094)
Q Consensus 863 fspdg~~LaSgs-~DgtI~vWdi~~~~~-~~~~~~~~-----~~~V~~v~~~~~~~~fspdg~~l~~~~~~-g~i~l~~- 933 (1094)
+|+||++++++. .++++.++|..+.+. +.+..... ...+..+. .+|.....++...+ +.+-+.+
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv-------~s~~~~~fVv~lkd~~~I~vVdy 157 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIV-------ASPGRPEFVVNLKDTGEIWVVDY 157 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEE-------E-SSSSEEEEEETTTTEEEEEET
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEE-------ecCCCCEEEEEEccCCeEEEEEe
Confidence 999999998776 589999999998752 22222211 12333443 45555544444333 5554444
Q ss_pred ------------CCCCceEEEEeCC--EE-EEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEE-------E--
Q 001349 934 ------------SSKYPKCLALVQG--KV-YCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQ-------V-- 989 (1094)
Q Consensus 934 ------------~~~~v~~l~~s~~--~l-~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~-------f-- 989 (1094)
.........++++ ++ +....++.|-++|..+++........ -..|..+...+- |
T Consensus 158 ~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g--~~p~~~~~~~~php~~g~vw~~ 235 (369)
T PF02239_consen 158 SDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTG--KKPHPGPGANFPHPGFGPVWAT 235 (369)
T ss_dssp TTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-S--SSBEETTEEEEEETTTEEEEEE
T ss_pred ccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeecc--ccccccccccccCCCcceEEee
Confidence 2334455566553 33 44566778999999998776543211 112222332221 1
Q ss_pred eCCccEE-EEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEE----EcCCeEEEEECCCCcEEEEeccc
Q 001349 990 HNGLVYT-ASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLG----CKGGTVEIWDQKRQIRIETLQTG 1062 (1094)
Q Consensus 990 s~~~~~l-as~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sg----s~dg~I~vwd~~t~~~~~~l~~~ 1062 (1094)
...+... ...+.+ .+.+||..+++.++++...+.-..+..+|+ ++++. ...++|.|+|..+.+.+.++..+
T Consensus 236 ~~~~~~~~~~ig~~--~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~ 313 (369)
T PF02239_consen 236 SGLGYFAIPLIGTD--PVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPG 313 (369)
T ss_dssp EBSSSSEEEEEE----TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHH
T ss_pred ccccceecccccCC--ccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEecc
Confidence 1111221 222222 567899999999999995444478888998 77776 45689999999999888888544
Q ss_pred CCcceEEEEEcCCCCEEEEEeCC--CcEEEEeC
Q 001349 1063 TSGKVQCMALDDNEEFLVIGTSD--GRIQAWGL 1093 (1094)
Q Consensus 1063 h~~~I~~l~~Spdg~~L~sgs~D--G~I~iWdl 1093 (1094)
....+..+.|++||+.+..+..+ |.|.+||-
T Consensus 314 ~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 314 PGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp HT--EEEEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred CCCcEeccEECCCCCEEEEEEecCCCEEEEEEC
Confidence 44469999999999977665544 36999985
|
... |
| >PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-12 Score=99.22 Aligned_cols=39 Identities=33% Similarity=0.773 Sum_probs=31.8
Q ss_pred ccCccccccCcEEcCCcccccHHhHHHHHHhCCC---CCCCC
Q 001349 166 CPITTHIFDDPVTLETGQTYERRAIQEWIERGNS---SCPIT 204 (1094)
Q Consensus 166 CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~---~CP~c 204 (1094)
||||+++|+|||+++|||+||+.||.+|++.... .||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999999999999999999999986433 59987
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.9e-10 Score=133.08 Aligned_cols=212 Identities=15% Similarity=0.061 Sum_probs=140.4
Q ss_pred CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCC---CcEEEEECCCCceEEEEecccCccceeeeecCc
Q 001349 833 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD---KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNS 909 (1094)
Q Consensus 833 g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D---gtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~ 909 (1094)
.+|.+||..+. ..+.+..|...+.+..|+|||+.|+.++.+ ..|.+||+.+++...+... .......
T Consensus 184 ~~l~i~D~~g~---~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~--~g~~~~~----- 253 (433)
T PRK04922 184 YALQVADSDGY---NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASF--RGINGAP----- 253 (433)
T ss_pred EEEEEECCCCC---CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccC--CCCccCc-----
Confidence 46999998765 334455677889999999999999988743 4699999998864433322 2222233
Q ss_pred eEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcC--CeEEEEECCCCceeEEeccceeecCCCCCeEEE
Q 001349 910 ILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQD--GAIQEIDLATGTFATIQTGHRKLLGKANPVHAL 987 (1094)
Q Consensus 910 ~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~D--g~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl 987 (1094)
.|+|||+.++. +.+.+ ..|++||+.++... .+..+.......
T Consensus 254 --~~SpDG~~l~~---------------------------~~s~~g~~~Iy~~d~~~g~~~-------~lt~~~~~~~~~ 297 (433)
T PRK04922 254 --SFSPDGRRLAL---------------------------TLSRDGNPEIYVMDLGSRQLT-------RLTNHFGIDTEP 297 (433)
T ss_pred --eECCCCCEEEE---------------------------EEeCCCCceEEEEECCCCCeE-------ECccCCCCccce
Confidence 39999987543 22333 36899999888753 233344445678
Q ss_pred EEeCCccEEEEEECCCC--EEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcC---CeEEEEECCCCcEEEEec
Q 001349 988 QVHNGLVYTASTSLDGA--AVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKG---GTVEIWDQKRQIRIETLQ 1060 (1094)
Q Consensus 988 ~fs~~~~~las~s~Dg~--~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~d---g~I~vwd~~t~~~~~~l~ 1060 (1094)
.|+|++..++..+..++ .|.++|+.+++......+.......+|+|| +++..+.+ ..|.+||+.+++.. .+.
T Consensus 298 ~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt 376 (433)
T PRK04922 298 TWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT 376 (433)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC
Confidence 99999998887764332 477777777654332223344557899998 56554433 26999999888754 442
Q ss_pred ccCCcceEEEEEcCCCCEEEEEeCC---CcEEEEeC
Q 001349 1061 TGTSGKVQCMALDDNEEFLVIGTSD---GRIQAWGL 1093 (1094)
Q Consensus 1061 ~~h~~~I~~l~~Spdg~~L~sgs~D---G~I~iWdl 1093 (1094)
+........|+|||++++..+.+ +.|.+|++
T Consensus 377 --~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 377 --PGSLDESPSFAPNGSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred --CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 22245677999999988776653 34666664
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-11 Score=135.54 Aligned_cols=215 Identities=18% Similarity=0.244 Sum_probs=150.5
Q ss_pred eeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEe
Q 001349 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR 925 (1094)
Q Consensus 846 ~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~ 925 (1094)
.....+.||++.|+++.|+.||.+|+|||+|-.+.|||.-..++.......|...|.++. |.|...
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvK-------FvP~tn------- 106 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVK-------FVPYTN------- 106 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEe-------eeccCC-------
Confidence 345678899999999999999999999999999999999876544444445566666665 544332
Q ss_pred CCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeE----EeccceeecCCCCCeEEEEEeCCc-cEEEEEE
Q 001349 926 NGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFAT----IQTGHRKLLGKANPVHALQVHNGL-VYTASTS 1000 (1094)
Q Consensus 926 ~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~----~~~~~~~~~~h~~~V~sl~fs~~~-~~las~s 1000 (1094)
+..+++|..|..|+++|+...+... .......+..|...|..++..|++ ..+-+++
T Consensus 107 -------------------nriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfwsas 167 (758)
T KOG1310|consen 107 -------------------NRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSAS 167 (758)
T ss_pred -------------------CeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEec
Confidence 1248899999999999998522211 111114566788899999998887 6777888
Q ss_pred CCCCEEEEEECCCCeEE-EE------ec--C--CCCEEEEEEeCC---EEEEEEcCCeEEEEECCC--------Cc----
Q 001349 1001 LDGAAVKMWSTSNYNMV-GS------LP--T--LSEVRAMVVSSE---LVYLGCKGGTVEIWDQKR--------QI---- 1054 (1094)
Q Consensus 1001 ~Dg~~I~iwd~~~~~~~-~~------~~--~--~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t--------~~---- 1054 (1094)
.|| +++-+|++..... .. +. + --...++.++|. ++++|+.|-..++||.+. ++
T Consensus 168 EDG-tirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~ 246 (758)
T KOG1310|consen 168 EDG-TIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTC 246 (758)
T ss_pred CCc-ceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCC
Confidence 887 9999999863211 11 11 1 134568888876 899999999999999321 11
Q ss_pred ------EEEEecccCCc-----------ceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1055 ------RIETLQTGTSG-----------KVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1055 ------~~~~l~~~h~~-----------~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
++..|-.+|.. .++-+.|+|+|.-|+..-..-.|+++|++
T Consensus 247 pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn 303 (758)
T KOG1310|consen 247 PPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVN 303 (758)
T ss_pred CCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeec
Confidence 24444344431 25778899999655554444579999874
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.3e-10 Score=130.64 Aligned_cols=212 Identities=14% Similarity=0.061 Sum_probs=139.9
Q ss_pred CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeC---CCcEEEEECCCCceEEEEecccCccceeeeecCc
Q 001349 833 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSL---DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNS 909 (1094)
Q Consensus 833 g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~---DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~ 909 (1094)
..|.+||..+.. .+.+..+...+.+..|||||+.|+..+. +..|.+||+.+++...+... ...+...
T Consensus 179 ~~l~~~d~dg~~---~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~--~~~~~~~----- 248 (429)
T PRK03629 179 YELRVSDYDGYN---QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF--PRHNGAP----- 248 (429)
T ss_pred eeEEEEcCCCCC---CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC--CCCcCCe-----
Confidence 378999988763 2334456778999999999999887643 45799999998864443322 2223333
Q ss_pred eEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcC--CeEEEEECCCCceeEEeccceeecCCCCCeEEE
Q 001349 910 ILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQD--GAIQEIDLATGTFATIQTGHRKLLGKANPVHAL 987 (1094)
Q Consensus 910 ~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~D--g~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl 987 (1094)
.|+|||+.++... +.+ ..|.+||+.++.... +..+...+...
T Consensus 249 --~~SPDG~~La~~~---------------------------~~~g~~~I~~~d~~tg~~~~-------lt~~~~~~~~~ 292 (429)
T PRK03629 249 --AFSPDGSKLAFAL---------------------------SKTGSLNLYVMDLASGQIRQ-------VTDGRSNNTEP 292 (429)
T ss_pred --EECCCCCEEEEEE---------------------------cCCCCcEEEEEECCCCCEEE-------ccCCCCCcCce
Confidence 3999998764322 223 358899998887542 22333456788
Q ss_pred EEeCCccEEEEEECCCCE--EEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEc-C--CeEEEEECCCCcEEEEec
Q 001349 988 QVHNGLVYTASTSLDGAA--VKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCK-G--GTVEIWDQKRQIRIETLQ 1060 (1094)
Q Consensus 988 ~fs~~~~~las~s~Dg~~--I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~-d--g~I~vwd~~t~~~~~~l~ 1060 (1094)
.|+|++..++..+.+++. |.++|+.++................|+|| +++..+. + ..|++||+.+++.. .+.
T Consensus 293 ~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt 371 (429)
T PRK03629 293 TWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLT 371 (429)
T ss_pred EECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeC
Confidence 999999988777655434 44556766654332223445567889998 5555443 3 46889999888643 442
Q ss_pred ccCCcceEEEEEcCCCCEEEEEeCCCc---EEEEeC
Q 001349 1061 TGTSGKVQCMALDDNEEFLVIGTSDGR---IQAWGL 1093 (1094)
Q Consensus 1061 ~~h~~~I~~l~~Spdg~~L~sgs~DG~---I~iWdl 1093 (1094)
..+ ......|+|||++|+.++.++. +.+|++
T Consensus 372 ~~~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 372 DTF--LDETPSIAPNGTMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred CCC--CCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence 222 2456789999999999888765 566654
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-09 Score=127.79 Aligned_cols=231 Identities=13% Similarity=0.092 Sum_probs=149.1
Q ss_pred CCeEEEeCCc-ceeecccCCCcEEEEEEeCC--EEEEEE---CCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCC
Q 001349 795 SSADFWNHRE-LVHVDSSENGKVLSIACFRD--KIFSGH---SDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE 868 (1094)
Q Consensus 795 g~I~vWd~~~-~~~~~~~h~~~V~~l~fspd--~LaSgs---~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~ 868 (1094)
..|.+||.+. ....+..+...+.+.+|+|| .|+..+ .+..|.+||+.++....+..+.+| +....|+|||+
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~---~~~~~~SPDG~ 255 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH---NGAPAFSPDGS 255 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC---cCCeEECCCCC
Confidence 3688888762 33445567778999999997 555433 345799999998854444444444 45689999999
Q ss_pred EEEEE-eCCC--cEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC
Q 001349 869 MLYSG-SLDK--TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ 945 (1094)
Q Consensus 869 ~LaSg-s~Dg--tI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~ 945 (1094)
.|+.. +.+| .|.+||+.+++...+.. ....+... .|+|||+.++....
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~--~~~~~~~~-------~wSPDG~~I~f~s~-------------------- 306 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVTD--GRSNNTEP-------TWFPDSQNLAYTSD-------------------- 306 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEccC--CCCCcCce-------EECCCCCEEEEEeC--------------------
Confidence 88755 4455 48899999876443322 22233333 39999987543322
Q ss_pred CEEEEEEcCC--eEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC--CEEEEEECCCCeEEEEec
Q 001349 946 GKVYCGCQDG--AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG--AAVKMWSTSNYNMVGSLP 1021 (1094)
Q Consensus 946 ~~l~sgs~Dg--~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg--~~I~iwd~~~~~~~~~~~ 1021 (1094)
.++ .|..+|+.++.... +..+........|+|++.+++..+.++ ..|.+||+.++... .+.
T Consensus 307 -------~~g~~~Iy~~d~~~g~~~~-------lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt 371 (429)
T PRK03629 307 -------QAGRPQVYKVNINGGAPQR-------ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLT 371 (429)
T ss_pred -------CCCCceEEEEECCCCCeEE-------eecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeC
Confidence 222 34555776665432 122223455788999999887766543 36888999887643 344
Q ss_pred CCCCEEEEEEeCC--EEEEEEcCCe---EEEEECCCCcEEEEecccCCcceEEEEEcC
Q 001349 1022 TLSEVRAMVVSSE--LVYLGCKGGT---VEIWDQKRQIRIETLQTGTSGKVQCMALDD 1074 (1094)
Q Consensus 1022 ~~~~v~~l~~spd--~l~sgs~dg~---I~vwd~~t~~~~~~l~~~h~~~I~~l~~Sp 1074 (1094)
.........|+|| .++.++.++. +++|++. |.....+ .+|.+.+...+|+|
T Consensus 372 ~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l-~~~~~~~~~p~Wsp 427 (429)
T PRK03629 372 DTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARL-PATDGQVKFPAWSP 427 (429)
T ss_pred CCCCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEEC-ccCCCCcCCcccCC
Confidence 3333456789999 6777666653 7777874 5555666 36778899999987
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.8e-09 Score=112.54 Aligned_cols=227 Identities=12% Similarity=0.198 Sum_probs=151.4
Q ss_pred cEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCC--CeEEEEEecCCCEEEE-EeCC------CcEEEEE
Q 001349 815 KVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTK--AVTGLAILQSGEMLYS-GSLD------KTARVWS 883 (1094)
Q Consensus 815 ~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~--~V~sv~fspdg~~LaS-gs~D------gtI~vWd 883 (1094)
...+++|+.| -++.|..+| .+||+.+-- +....-+-+.+ .+..|-| ..++++- ||.+ ..|.|||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~--ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPF--KESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCch--hhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEe
Confidence 4456899987 666665555 899987642 12111111222 2223333 2345443 3333 4699999
Q ss_pred CCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeC--CeEEEEcC---CCCceEEEEeCCE--EE-EEEcCC
Q 001349 884 IGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRN--GKTKLLNS---SKYPKCLALVQGK--VY-CGCQDG 955 (1094)
Q Consensus 884 i~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~--g~i~l~~~---~~~v~~l~~s~~~--l~-sgs~Dg 955 (1094)
=.. .+++.......+|.++.+..+.++..-.++..+....+ ..+..++. .+..+++....+. |+ =|-.-|
T Consensus 82 D~k--~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~G 159 (346)
T KOG2111|consen 82 DLK--ERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTG 159 (346)
T ss_pred ccc--CcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccc
Confidence 333 36677777788999998766655554444433322221 12222322 2334444443332 22 256679
Q ss_pred eEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec---CCCCEEEEEEe
Q 001349 956 AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---TLSEVRAMVVS 1032 (1094)
Q Consensus 956 ~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~---~~~~v~~l~~s 1032 (1094)
.|++-|+...+.- .+..+.+|...|.+++.+.+|..+|++|..|..|||||..+|..+..+. ....|.+++||
T Consensus 160 qvQi~dL~~~~~~----~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFS 235 (346)
T KOG2111|consen 160 QVQIVDLASTKPN----APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFS 235 (346)
T ss_pred eEEEEEhhhcCcC----CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeC
Confidence 9999999876552 1256788999999999999999999999999899999999999999998 35779999999
Q ss_pred CC--EEEEEEcCCeEEEEECCC
Q 001349 1033 SE--LVYLGCKGGTVEIWDQKR 1052 (1094)
Q Consensus 1033 pd--~l~sgs~dg~I~vwd~~t 1052 (1094)
|+ +++++|+.|+|+||.+..
T Consensus 236 p~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 236 PNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCccEEEEEcCCCeEEEEEeec
Confidence 99 899999999999998754
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.4e-10 Score=131.58 Aligned_cols=231 Identities=14% Similarity=0.060 Sum_probs=148.5
Q ss_pred CCeEEEeCC-cceeecccCCCcEEEEEEeCC--EEEEEEC---CCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCC
Q 001349 795 SSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHS---DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE 868 (1094)
Q Consensus 795 g~I~vWd~~-~~~~~~~~h~~~V~~l~fspd--~LaSgs~---Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~ 868 (1094)
..|.+||.. .....+..|...+.+.+|+|| .|+..+. +..|++||+.++....+ ..+.+...+..|+|||+
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l---~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV---ASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe---ccCCCCccCceECCCCC
Confidence 368888876 334456677788999999997 6776653 34799999998843333 33444556789999998
Q ss_pred EEE-EEeCCC--cEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC
Q 001349 869 MLY-SGSLDK--TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ 945 (1094)
Q Consensus 869 ~La-Sgs~Dg--tI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~ 945 (1094)
.|+ +.+.+| .|++||+.+++...+. .+....... .|+|||+.++..+
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt--~~~~~~~~~-------~~spDG~~l~f~s--------------------- 310 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTRLT--NHFGIDTEP-------TWAPDGKSIYFTS--------------------- 310 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEECc--cCCCCccce-------EECCCCCEEEEEE---------------------
Confidence 775 555555 5999999988643332 222222233 3899998754332
Q ss_pred CEEEEEEcCC--eEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC--CEEEEEECCCCeEEEEec
Q 001349 946 GKVYCGCQDG--AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG--AAVKMWSTSNYNMVGSLP 1021 (1094)
Q Consensus 946 ~~l~sgs~Dg--~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg--~~I~iwd~~~~~~~~~~~ 1021 (1094)
..+| .|.++|+.++..... ..+........|+|++.+++..+.++ ..|.+||+.++... .+.
T Consensus 311 ------d~~g~~~iy~~dl~~g~~~~l-------t~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt 376 (433)
T PRK04922 311 ------DRGGRPQIYRVAASGGSAERL-------TFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT 376 (433)
T ss_pred ------CCCCCceEEEEECCCCCeEEe-------ecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC
Confidence 1222 366677766654321 11222344689999999888765443 26999999887654 454
Q ss_pred CCCCEEEEEEeCC--EEEEEEc---CCeEEEEECCCCcEEEEecccCCcceEEEEEcC
Q 001349 1022 TLSEVRAMVVSSE--LVYLGCK---GGTVEIWDQKRQIRIETLQTGTSGKVQCMALDD 1074 (1094)
Q Consensus 1022 ~~~~v~~l~~spd--~l~sgs~---dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Sp 1074 (1094)
+........|+|| .++..+. .+.|++++...+ ....+ ..+.+.+...+|+|
T Consensus 377 ~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~-~~~~l-~~~~g~~~~p~wsp 432 (433)
T PRK04922 377 PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR-VRQRL-VSADGEVREPAWSP 432 (433)
T ss_pred CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEEc-ccCCCCCCCCccCC
Confidence 4444566789998 4554443 346888888543 44555 24556778888886
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.9e-09 Score=111.46 Aligned_cols=267 Identities=13% Similarity=0.139 Sum_probs=154.2
Q ss_pred ccccCcEEEEeeCCCCeEEEeCC-cceeecc-cCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCC-cc---------
Q 001349 781 LAFEMVKVLSNGHDSSADFWNHR-ELVHVDS-SENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGS-IL--------- 845 (1094)
Q Consensus 781 ~~~d~~~l~s~s~dg~I~vWd~~-~~~~~~~-~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~-~~--------- 845 (1094)
+...-..++++..|-+|++|+-+ +....++ .....|+|++|-|. .|+.|+..| |.+|..... ..
T Consensus 106 WhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~ 184 (445)
T KOG2139|consen 106 WHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMST 184 (445)
T ss_pred echhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccc
Confidence 33345677889999999999977 3333333 23578999999994 788888755 889976421 00
Q ss_pred --eeEEEecccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEE
Q 001349 846 --HLIQQIREHTKAVTGLAILQSGEMLYSGSL-DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKV 922 (1094)
Q Consensus 846 --~~~~~l~~H~~~V~sv~fspdg~~LaSgs~-DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~ 922 (1094)
..+....+| ..|+++.|.+||..+++++. |..|+|||.+++....+... ..+.+.-+. |+|||..+..
T Consensus 185 ~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~-glgg~slLk-------wSPdgd~lfa 255 (445)
T KOG2139|consen 185 HHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK-GLGGFSLLK-------WSPDGDVLFA 255 (445)
T ss_pred cchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc-CCCceeeEE-------EcCCCCEEEE
Confidence 112223455 68999999999999999986 67899999999864444322 223344444 9999987555
Q ss_pred EEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECC
Q 001349 923 HLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLD 1002 (1094)
Q Consensus 923 ~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~D 1002 (1094)
...|+..++|+.+..-++..+ .--.+.|....|+|.|.++.-....
T Consensus 256 At~davfrlw~e~q~wt~erw----------------------------------~lgsgrvqtacWspcGsfLLf~~sg 301 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKERW----------------------------------ILGSGRVQTACWSPCGSFLLFACSG 301 (445)
T ss_pred ecccceeeeehhcccceecce----------------------------------eccCCceeeeeecCCCCEEEEEEcC
Confidence 555544444433222222221 1111244555555554443332221
Q ss_pred CCEEEEEECCC----C-----------eEE------EEec----CCCCEEEEEEeCC--EEEEEEcC--------CeEEE
Q 001349 1003 GAAVKMWSTSN----Y-----------NMV------GSLP----TLSEVRAMVVSSE--LVYLGCKG--------GTVEI 1047 (1094)
Q Consensus 1003 g~~I~iwd~~~----~-----------~~~------~~~~----~~~~v~~l~~spd--~l~sgs~d--------g~I~v 1047 (1094)
.-++|.+.- + .++ .... -.+.+.+++|+|. ++++.... +.|.+
T Consensus 302 --sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~ 379 (445)
T KOG2139|consen 302 --SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISR 379 (445)
T ss_pred --CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhh
Confidence 222332210 0 001 1111 2567889999987 77765543 34677
Q ss_pred EECCCCcEEEEecccC--CcceEEEEEcC---CCCEEEEEeCCCcEEEEeC
Q 001349 1048 WDQKRQIRIETLQTGT--SGKVQCMALDD---NEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1048 wd~~t~~~~~~l~~~h--~~~I~~l~~Sp---dg~~L~sgs~DG~I~iWdl 1093 (1094)
||....-.+.-...|- .....-++|+| +|.+|..+=+.|.|.-|++
T Consensus 380 fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 380 FDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred hcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 8876544333221111 11234455654 5667777777888877665
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.5e-10 Score=123.20 Aligned_cols=212 Identities=13% Similarity=0.210 Sum_probs=153.1
Q ss_pred ccccccCcEEEEeeCCCCeEEEeCCc------ceeecccCCCcEEEEEEeC---CEEEEEECC--CeEEEEecCCCccee
Q 001349 779 SPLAFEMVKVLSNGHDSSADFWNHRE------LVHVDSSENGKVLSIACFR---DKIFSGHSD--GTIKVWTGRGSILHL 847 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~dg~I~vWd~~~------~~~~~~~h~~~V~~l~fsp---d~LaSgs~D--g~I~vWd~~t~~~~~ 847 (1094)
..+.....++++|-.+|.+.+|..+. ....+..+ ..+..+.-++ ..+++|+.. ..++|||+.+. +.
T Consensus 109 ~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~--~q 185 (412)
T KOG3881|consen 109 KGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS--KQ 185 (412)
T ss_pred cchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccc--ee
Confidence 33444467899999999999998761 11222222 3444554444 388889999 89999999987 55
Q ss_pred EEEecccC---------CCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeC
Q 001349 848 IQQIREHT---------KAVTGLAILQS--GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQ 916 (1094)
Q Consensus 848 ~~~l~~H~---------~~V~sv~fspd--g~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspd 916 (1094)
++.-+.-. -+++++.|-+. ...|++++.-+.+|+||+..+........-...++.++. ..|+
T Consensus 186 iw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~-------l~p~ 258 (412)
T KOG3881|consen 186 IWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTG-------LTPS 258 (412)
T ss_pred eeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeee-------ecCC
Confidence 55433211 24678899886 789999999999999999986422222222233344433 3344
Q ss_pred CCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEE
Q 001349 917 GAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYT 996 (1094)
Q Consensus 917 g~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~l 996 (1094)
|+ .+++|..-|.+..||++++.... ..+.+..+.|+++..+|++.++
T Consensus 259 gn----------------------------~Iy~gn~~g~l~~FD~r~~kl~g-----~~~kg~tGsirsih~hp~~~~l 305 (412)
T KOG3881|consen 259 GN----------------------------FIYTGNTKGQLAKFDLRGGKLLG-----CGLKGITGSIRSIHCHPTHPVL 305 (412)
T ss_pred Cc----------------------------EEEEecccchhheecccCceeec-----cccCCccCCcceEEEcCCCceE
Confidence 43 48899999999999999998763 3467788999999999999999
Q ss_pred EEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC
Q 001349 997 ASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE 1034 (1094)
Q Consensus 997 as~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd 1034 (1094)
++++.| +.|||+|+.+.+++....-...++++.+.++
T Consensus 306 as~GLD-RyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 306 ASCGLD-RYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred Eeeccc-eeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 999999 5999999999877776666667777777654
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-09 Score=122.95 Aligned_cols=263 Identities=10% Similarity=0.110 Sum_probs=176.8
Q ss_pred cCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEecccC--CCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001349 811 SENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHT--KAVTGLAILQSGEMLYSGSLDKTARVWSIG 885 (1094)
Q Consensus 811 ~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~--~~V~sv~fspdg~~LaSgs~DgtI~vWdi~ 885 (1094)
.|...-+.|..+|| .++||.+--.|++||+..-.+ .|..|. ..|.-.-.+-|-..++--..|.+|-+..--
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL----KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~ 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL----KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY 124 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEccccee----eeeecccccceeEEEeccchhhheEeecCceeeehhhc
Confidence 56777788999997 788999999999999987522 233443 334444455555556666677777654432
Q ss_pred CCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEE-----------EEcC-CCCceEEEEeC--CEEEEE
Q 001349 886 NEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK-----------LLNS-SKYPKCLALVQ--GKVYCG 951 (1094)
Q Consensus 886 ~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~-----------l~~~-~~~v~~l~~s~--~~l~sg 951 (1094)
. ....+... ..-..+. ++.-.--+.++.....+. -+.. .+.++++..++ +.|++|
T Consensus 125 G-~hy~~RIP---~~GRDm~-------y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~G 193 (703)
T KOG2321|consen 125 G-RHYRTRIP---KFGRDMK-------YHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACG 193 (703)
T ss_pred C-eeeeeecC---cCCcccc-------ccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEec
Confidence 2 11111111 1111111 111111111111111111 1222 35677777774 778999
Q ss_pred EcCCeEEEEECCCCceeEEeccceeecCCCC-----CeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecC--CC
Q 001349 952 CQDGAIQEIDLATGTFATIQTGHRKLLGKAN-----PVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT--LS 1024 (1094)
Q Consensus 952 s~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~-----~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~--~~ 1024 (1094)
+.+|.|..||.++......+.....+..|.+ .|+++.|+.++..++.|..+| .+.|||+++.+++..-.| ..
T Consensus 194 t~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G-~v~iyDLRa~~pl~~kdh~~e~ 272 (703)
T KOG2321|consen 194 TEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG-SVLIYDLRASKPLLVKDHGYEL 272 (703)
T ss_pred ccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCC-cEEEEEcccCCceeecccCCcc
Confidence 9999999999998876655544444444443 499999999999999999997 999999999988877776 45
Q ss_pred CEEEEEEeCC---EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001349 1025 EVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1025 ~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iW 1091 (1094)
+|..+.|-+. -.+...+...++|||-.+|+....+. ....++.+|+-|++.+++++..++.+..|
T Consensus 273 pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE--pt~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 273 PIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE--PTSDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred ceeeecccccCCCceEEecchHHhhhcccccCCceeecc--ccCCcCceeeecCCceEEEecCCCcceeE
Confidence 6888888654 33444556789999999999998885 34469999999999999999998877655
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.7e-09 Score=126.92 Aligned_cols=231 Identities=9% Similarity=-0.041 Sum_probs=149.3
Q ss_pred CeEEEeCC-cceeecccCCCcEEEEEEeCC--EEEEEEC---CCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCE
Q 001349 796 SADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHS---DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEM 869 (1094)
Q Consensus 796 ~I~vWd~~-~~~~~~~~h~~~V~~l~fspd--~LaSgs~---Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~ 869 (1094)
.|.+||.. .....+..|...+.+..|+|| .|+..+. +..|.+||+.++.. ..+..+.+.+....|+|||+.
T Consensus 183 ~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~---~~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 183 RLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR---ELVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred EEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE---EEeecCCCcccCcEECCCCCE
Confidence 67777876 334556678889999999997 6665543 46899999998843 334456667888999999987
Q ss_pred EE-EEeCCCc--EEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCC
Q 001349 870 LY-SGSLDKT--ARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQG 946 (1094)
Q Consensus 870 La-Sgs~Dgt--I~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~ 946 (1094)
|+ +.+.+|. |.+||+.++....+.. +....... .|+|||+.++..+..
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~~Lt~--~~~~~~~~-------~~spDG~~i~f~s~~-------------------- 310 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTTRLTD--SPAIDTSP-------SYSPDGSQIVFESDR-------------------- 310 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceEEccC--CCCccCce-------eEcCCCCEEEEEECC--------------------
Confidence 75 5566655 7777888875433322 22222223 389999876433211
Q ss_pred EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC--CEEEEEECCCCeEEEEecCCC
Q 001349 947 KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG--AAVKMWSTSNYNMVGSLPTLS 1024 (1094)
Q Consensus 947 ~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg--~~I~iwd~~~~~~~~~~~~~~ 1024 (1094)
..+..|.+||+.++..... ..+...+....|+|++.+++..+.++ ..|.+||+.++. ...+....
T Consensus 311 -----~g~~~Iy~~d~~g~~~~~l-------t~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~~ 377 (435)
T PRK05137 311 -----SGSPQLYVMNADGSNPRRI-------SFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTSGF 377 (435)
T ss_pred -----CCCCeEEEEECCCCCeEEe-------ecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccCCC
Confidence 0123678888876655322 22234456678999999888776543 368888876543 34444444
Q ss_pred CEEEEEEeCC--EEEEEEc-C-----CeEEEEECCCCcEEEEecccCCcceEEEEEcC
Q 001349 1025 EVRAMVVSSE--LVYLGCK-G-----GTVEIWDQKRQIRIETLQTGTSGKVQCMALDD 1074 (1094)
Q Consensus 1025 ~v~~l~~spd--~l~sgs~-d-----g~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Sp 1074 (1094)
.+....|+|| .++..+. . ..++++|+..+.. ..+. ..+.+...+|+|
T Consensus 378 ~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~--~~~~~~~p~Wsp 432 (435)
T PRK05137 378 LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP--TPGDASDPAWSP 432 (435)
T ss_pred CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc--CCCCccCcccCC
Confidence 5778899998 4444332 2 3688889876654 4443 234567778876
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.3e-10 Score=124.38 Aligned_cols=224 Identities=15% Similarity=0.275 Sum_probs=159.3
Q ss_pred ccCCCeEEEEEecCCCEEE-EEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEE
Q 001349 853 EHTKAVTGLAILQSGEMLY-SGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL 931 (1094)
Q Consensus 853 ~H~~~V~sv~fspdg~~La-Sgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l 931 (1094)
+|....+.|..+|||+|+. ||...-.|++||+..-.++.-... ...+..+.. .+.|-..++....|.+|.+
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl--Dae~V~fei------LsDD~SK~v~L~~DR~Ief 120 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHL--DAEVVDFEI------LSDDYSKSVFLQNDRTIEF 120 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecc--cccceeEEE------eccchhhheEeecCceeee
Confidence 5788889999999999764 566678899999987543322222 222222221 2233333333444444443
Q ss_pred Ec---------CCCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEE
Q 001349 932 LN---------SSKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS 1000 (1094)
Q Consensus 932 ~~---------~~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s 1000 (1094)
.. ....-+.+.++. --|++++....|+-+++..|..+ ..+......++++..++-..++++|+
T Consensus 121 Hak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL------~P~~~~~~~lN~v~in~~hgLla~Gt 194 (703)
T KOG2321|consen 121 HAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFL------NPFETDSGELNVVSINEEHGLLACGT 194 (703)
T ss_pred hhhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccc------cccccccccceeeeecCccceEEecc
Confidence 33 334445555542 23888888889999999999988 44445568899999999999999998
Q ss_pred CCCCEEEEEECCCCeEEEEecCC------------CCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcc
Q 001349 1001 LDGAAVKMWSTSNYNMVGSLPTL------------SEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGK 1066 (1094)
Q Consensus 1001 ~Dg~~I~iwd~~~~~~~~~~~~~------------~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~ 1066 (1094)
.+| .|..||.++...+.++... ..|+++.|+.+ .+++|+.+|.|.|||+++.+++..-..+..-+
T Consensus 195 ~~g-~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~p 273 (703)
T KOG2321|consen 195 EDG-VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELP 273 (703)
T ss_pred cCc-eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccc
Confidence 887 9999999988777766522 23999999997 79999999999999999999887765455558
Q ss_pred eEEEEEcCC--CCEEEEEeCCCcEEEEe
Q 001349 1067 VQCMALDDN--EEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1067 I~~l~~Spd--g~~L~sgs~DG~I~iWd 1092 (1094)
|..+.|.+. ++.++|. +...++|||
T Consensus 274 i~~l~~~~~~~q~~v~S~-Dk~~~kiWd 300 (703)
T KOG2321|consen 274 IKKLDWQDTDQQNKVVSM-DKRILKIWD 300 (703)
T ss_pred eeeecccccCCCceEEec-chHHhhhcc
Confidence 999999765 3556654 456899997
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3e-09 Score=112.32 Aligned_cols=229 Identities=13% Similarity=0.189 Sum_probs=148.4
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCceE-EEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEc--
Q 001349 857 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIH-CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN-- 933 (1094)
Q Consensus 857 ~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~-~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~-- 933 (1094)
...+++|+.|...++.|.++| .+||+.+.-+.. ........-.+..+-+..+.+++.-.|.. -...-..+.+||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~--pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSR--PKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCC--CCCCCceEEEEecc
Confidence 345599999999999988887 899998753210 00111111111111111121222111110 000013455665
Q ss_pred ---------CCCCceEEEEeCCEEEEEEcCCeEEEEECCC-CceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC
Q 001349 934 ---------SSKYPKCLALVQGKVYCGCQDGAIQEIDLAT-GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG 1003 (1094)
Q Consensus 934 ---------~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~-~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg 1003 (1094)
....|..+.+..++|++.- .+.|.+|...+ .+.+..+.. ......+.+++-+.+..+++.-+..-
T Consensus 84 k~~~i~el~f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~l~~~et----~~NPkGlC~~~~~~~k~~LafPg~k~ 158 (346)
T KOG2111|consen 84 KERCIIELSFNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKLLHVIET----RSNPKGLCSLCPTSNKSLLAFPGFKT 158 (346)
T ss_pred cCcEEEEEEeccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhheeeeec----ccCCCceEeecCCCCceEEEcCCCcc
Confidence 3467888888888877764 57899998873 333322211 11122344554455566666655544
Q ss_pred CEEEEEECCCCeE--EEEe-cCCCCEEEEEEeCC--EEEEEEcCCe-EEEEECCCCcEEEEecccCC-cceEEEEEcCCC
Q 001349 1004 AAVKMWSTSNYNM--VGSL-PTLSEVRAMVVSSE--LVYLGCKGGT-VEIWDQKRQIRIETLQTGTS-GKVQCMALDDNE 1076 (1094)
Q Consensus 1004 ~~I~iwd~~~~~~--~~~~-~~~~~v~~l~~spd--~l~sgs~dg~-I~vwd~~t~~~~~~l~~~h~-~~I~~l~~Spdg 1076 (1094)
+.|+|-|+...+. ...+ .|.+.|.+++.+-+ .++++|..|+ |||||..+|+++..+..|.. ..|.+++||||+
T Consensus 159 GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~ 238 (346)
T KOG2111|consen 159 GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNS 238 (346)
T ss_pred ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCc
Confidence 5999999976554 2333 49999999999877 8999999987 79999999999999976643 379999999999
Q ss_pred CEEEEEeCCCcEEEEeC
Q 001349 1077 EFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1077 ~~L~sgs~DG~I~iWdl 1093 (1094)
.+|+++|+.|+|+||.+
T Consensus 239 s~LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 239 SWLAVSSDKGTLHIFSL 255 (346)
T ss_pred cEEEEEcCCCeEEEEEe
Confidence 99999999999999976
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.3e-09 Score=127.01 Aligned_cols=232 Identities=12% Similarity=0.078 Sum_probs=141.0
Q ss_pred CCeEEEeCC-cceeecccCCCcEEEEEEeCC--EEEEEECC---CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCC
Q 001349 795 SSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSD---GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE 868 (1094)
Q Consensus 795 g~I~vWd~~-~~~~~~~~h~~~V~~l~fspd--~LaSgs~D---g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~ 868 (1094)
..|.+||.+ .....+..+...+.+.+|+|| .|+..+.+ ..|.+||+.++....+ ....+.+....|+|||+
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l---~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV---ANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe---ecCCCCccceEECCCCC
Confidence 356666665 233445577888999999997 66655532 4699999998843333 33345567899999999
Q ss_pred EEE-EEeCCCcEEEEEC--CCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC
Q 001349 869 MLY-SGSLDKTARVWSI--GNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ 945 (1094)
Q Consensus 869 ~La-Sgs~DgtI~vWdi--~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~ 945 (1094)
.|+ +.+.+|...||.+ .++....+ ..+....... .|+|||+.++..+
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~l--t~~~~~~~~~-------~wSpDG~~l~f~s--------------------- 302 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRL--TQSSGIDTEP-------FFSPDGRSIYFTS--------------------- 302 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEEC--CCCCCCCcCe-------EEcCCCCEEEEEe---------------------
Confidence 886 5677887777654 44432222 1122222222 3999998754322
Q ss_pred CEEEEEEcCCeEEEE--ECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCC--EEEEEECCCCeEEEEec
Q 001349 946 GKVYCGCQDGAIQEI--DLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGA--AVKMWSTSNYNMVGSLP 1021 (1094)
Q Consensus 946 ~~l~sgs~Dg~I~iw--Dl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~--~I~iwd~~~~~~~~~~~ 1021 (1094)
..+|...+| |..++..... .+. ........|+|++.+++..+.+++ .|.+||+.++... .+.
T Consensus 303 ------~~~g~~~Iy~~~~~~g~~~~l-----t~~--g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt 368 (427)
T PRK02889 303 ------DRGGAPQIYRMPASGGAAQRV-----TFT--GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALT 368 (427)
T ss_pred ------cCCCCcEEEEEECCCCceEEE-----ecC--CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-Ecc
Confidence 223444444 4444443211 111 122345789999999887765543 6999999887654 344
Q ss_pred CCCCEEEEEEeCC--EEEEEEc-CC--eEEEEECCCCcEEEEecccCCcceEEEEEcCC
Q 001349 1022 TLSEVRAMVVSSE--LVYLGCK-GG--TVEIWDQKRQIRIETLQTGTSGKVQCMALDDN 1075 (1094)
Q Consensus 1022 ~~~~v~~l~~spd--~l~sgs~-dg--~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spd 1075 (1094)
.........|+|| .++.++. .| .+++.+. ++.....+ ..+.+.+...+|+|-
T Consensus 369 ~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l-~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 369 DTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRL-SVQGGDVREPSWGPF 425 (427)
T ss_pred CCCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEe-ecCCCCCCCCccCCC
Confidence 3334567899998 4555443 33 3566666 45555555 346667888889873
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-09 Score=118.00 Aligned_cols=252 Identities=9% Similarity=0.129 Sum_probs=174.6
Q ss_pred EEEEeeCCCCeEEEeCCcc--------eeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCc--ceeEEEecccCC
Q 001349 787 KVLSNGHDSSADFWNHREL--------VHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSI--LHLIQQIREHTK 856 (1094)
Q Consensus 787 ~l~s~s~dg~I~vWd~~~~--------~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~--~~~~~~l~~H~~ 856 (1094)
.+...+.+..+..+.+.+. .......+++|..+......|++|-.+|.+.+|....+. ...+..+..| .
T Consensus 71 vl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~ 149 (412)
T KOG3881|consen 71 VLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-P 149 (412)
T ss_pred EeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecC-C
Confidence 4444445666665555411 113345578888888888899999999999999988442 1233444333 4
Q ss_pred CeEEEEEecC-CCEEEEEeCC--CcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEc
Q 001349 857 AVTGLAILQS-GEMLYSGSLD--KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN 933 (1094)
Q Consensus 857 ~V~sv~fspd-g~~LaSgs~D--gtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~ 933 (1094)
.+..|.-++. ..++++||.. ..++|||+.+.+ +.......+..-..+ .+.+|
T Consensus 150 g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~-qiw~aKNvpnD~L~L-----------------------rVPvW- 204 (412)
T KOG3881|consen 150 GLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK-QIWSAKNVPNDRLGL-----------------------RVPVW- 204 (412)
T ss_pred ceeeeccCCCCCceEecCchhcccceeeeecccce-eeeeccCCCCccccc-----------------------eeeee-
Confidence 5666776764 4566668888 889999999862 322222211111111 12222
Q ss_pred CCCCceEEEEeC----CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEE
Q 001349 934 SSKYPKCLALVQ----GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMW 1009 (1094)
Q Consensus 934 ~~~~v~~l~~s~----~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iw 1009 (1094)
++.+.|-+ ..+++++.-+.+++||++.++... ..+.--..+++++...|++.++.++..-| .+..|
T Consensus 205 ----~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV-----~~fd~~E~~is~~~l~p~gn~Iy~gn~~g-~l~~F 274 (412)
T KOG3881|consen 205 ----ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPV-----AQFDFLENPISSTGLTPSGNFIYTGNTKG-QLAKF 274 (412)
T ss_pred ----eccceecCCCCCceEEEEecceeEEEecCcccCcce-----eEeccccCcceeeeecCCCcEEEEecccc-hhhee
Confidence 23344433 359999999999999999775432 23333467899999999999999998876 99999
Q ss_pred ECCCCeEEEE-ec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCC
Q 001349 1010 STSNYNMVGS-LP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNE 1076 (1094)
Q Consensus 1010 d~~~~~~~~~-~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg 1076 (1094)
|++.++.... +. -.+.++++..+|. ++++++-|..|||+|+.+.+++.... -...++++.+.++-
T Consensus 275 D~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY--vKs~lt~il~~~~~ 343 (412)
T KOG3881|consen 275 DLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY--VKSRLTFILLRDDV 343 (412)
T ss_pred cccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh--hhccccEEEecCCc
Confidence 9999998877 55 4688999999999 89999999999999999977766553 34467888776543
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.3e-11 Score=133.29 Aligned_cols=188 Identities=18% Similarity=0.268 Sum_probs=151.7
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCC
Q 001349 858 VTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKY 937 (1094)
Q Consensus 858 V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~ 937 (1094)
-..+.++.+|.+++.|+..|.|-.+|+.++.+.+-. .....|.++. |..+.+
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei--~v~Etv~Dv~-------~LHneq------------------- 183 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI--NVMETVRDVT-------FLHNEQ------------------- 183 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeee--ehhhhhhhhh-------hhcchH-------------------
Confidence 456889999999999999999999999998644332 2244555554 332222
Q ss_pred ceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEE
Q 001349 938 PKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMV 1017 (1094)
Q Consensus 938 v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~ 1017 (1094)
++.......+++||- .|..+.. +..| ..|..+.|-|...++++++..| .++--|+.+|+.+
T Consensus 184 ----------~~AVAQK~y~yvYD~-~GtElHC------lk~~-~~v~rLeFLPyHfLL~~~~~~G-~L~Y~DVS~GklV 244 (545)
T KOG1272|consen 184 ----------FFAVAQKKYVYVYDN-NGTELHC------LKRH-IRVARLEFLPYHFLLVAASEAG-FLKYQDVSTGKLV 244 (545)
T ss_pred ----------HHHhhhhceEEEecC-CCcEEee------hhhc-CchhhhcccchhheeeecccCC-ceEEEeechhhhh
Confidence 444456678889984 4665533 2222 5788999999999999998886 9999999999999
Q ss_pred EEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1018 GSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1018 ~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
..+. ..+.+..|.-+|- .+-+|..+|+|.+|...+.+++..+. .|.++|.++++.++|.+++|.|.|..++|||+
T Consensus 245 a~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL-cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDl 322 (545)
T KOG1272|consen 245 ASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL-CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDL 322 (545)
T ss_pred HHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHH-hcCCCcceEEECCCCcEEeecccccceeEeee
Confidence 9888 5677888888886 78889999999999999999888884 79999999999999999999999999999997
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=7e-10 Score=123.77 Aligned_cols=210 Identities=15% Similarity=0.203 Sum_probs=143.9
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEE--Ee--cccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEc
Q 001349 858 VTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCV--QV--HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN 933 (1094)
Q Consensus 858 V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~--~~--~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~ 933 (1094)
+....++-.|++|+-.-. ..+.+|+.+.+...+. .. +....+.. -.+ +...-.+.|-.+.++...|.+.+++
T Consensus 126 ~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~c-Hdf--n~~~a~~~g~dllIGf~tGqvq~id 201 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTC-HDF--NSFTATPKGLDLLIGFTTGQVQLID 201 (636)
T ss_pred eeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCce-ecc--cccccCCCCcceEEeeccCceEEec
Confidence 444444445666654333 3588898885431111 11 11111111 110 0111356677778888888887776
Q ss_pred C----------------CCCceEEEEeC---CEEEEEEcCCeEEEEECCC--------------CceeEEec--------
Q 001349 934 S----------------SKYPKCLALVQ---GKVYCGCQDGAIQEIDLAT--------------GTFATIQT-------- 972 (1094)
Q Consensus 934 ~----------------~~~v~~l~~s~---~~l~sgs~Dg~I~iwDl~~--------------~~~~~~~~-------- 972 (1094)
. ...++|+.|.+ +.++++..+|.+.+||... +....+..
T Consensus 202 p~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rN 281 (636)
T KOG2394|consen 202 PINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRN 281 (636)
T ss_pred chhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCC
Confidence 4 35789999975 4688899999999997631 11111100
Q ss_pred cceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEE
Q 001349 973 GHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWD 1049 (1094)
Q Consensus 973 ~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd 1049 (1094)
+...+.--...|+.++|++|+.++|+.+.|| .+||||..+.+++..++ --+...|++|||| +|++|++|.-|.||.
T Consensus 282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDG-fLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwS 360 (636)
T KOG2394|consen 282 PVARWHIGEGSINEFAFSPDGKYLATVSQDG-FLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWS 360 (636)
T ss_pred ccceeEeccccccceeEcCCCceEEEEecCc-eEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEE
Confidence 0011222235789999999999999999997 99999999887776665 3577899999999 999999999999999
Q ss_pred CCCCcEEEEecccCCcceEEEEEc
Q 001349 1050 QKRQIRIETLQTGTSGKVQCMALD 1073 (1094)
Q Consensus 1050 ~~t~~~~~~l~~~h~~~I~~l~~S 1073 (1094)
+...+.+..= .||..+|+.|+|.
T Consensus 361 f~erRVVARG-qGHkSWVs~VaFD 383 (636)
T KOG2394|consen 361 FEERRVVARG-QGHKSWVSVVAFD 383 (636)
T ss_pred eccceEEEec-cccccceeeEeec
Confidence 9999998888 5999999999998
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.5e-10 Score=123.55 Aligned_cols=193 Identities=11% Similarity=0.093 Sum_probs=146.2
Q ss_pred CcEEEEeeCCCCeEEEeCC-cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEE
Q 001349 785 MVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGL 861 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~-~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv 861 (1094)
...++.++.||.+.+-+-. ........|.+.|.|-.|+|| -|+|++.||.|++|.-.+. ...++.....+|.|+
T Consensus 75 ~d~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM---LRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM---LRSTVVQNEESIRCA 151 (737)
T ss_pred cceEEEEcCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch---HHHHHhhcCceeEEE
Confidence 4578889999999988766 555677889999999999998 8999999999999986543 344455567889999
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC-------
Q 001349 862 AILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS------- 934 (1094)
Q Consensus 862 ~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~------- 934 (1094)
+|.|+++.++-+.. +.+.|=-+..+ .+.+....|.+-|.++. |++.+..+++++.|-..++||.
T Consensus 152 ~W~p~S~~vl~c~g-~h~~IKpL~~n-~k~i~WkAHDGiiL~~~-------W~~~s~lI~sgGED~kfKvWD~~G~~Lf~ 222 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQG-GHISIKPLAAN-SKIIRWRAHDGLVLSLS-------WSTQSNIIASGGEDFRFKIWDAQGANLFT 222 (737)
T ss_pred EECCCCCceEEecC-CeEEEeecccc-cceeEEeccCcEEEEee-------cCccccceeecCCceeEEeecccCccccc
Confidence 99998765554433 34555444432 25666677888888888 8999999999999999999985
Q ss_pred ----CCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEE
Q 001349 935 ----SKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAV 1006 (1094)
Q Consensus 935 ----~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I 1006 (1094)
.-.|++++|+++.++....-++.++=.+ ..+.|..++|++||..++++...|..+
T Consensus 223 S~~~ey~ITSva~npd~~~~v~S~nt~R~~~p-----------------~~GSifnlsWS~DGTQ~a~gt~~G~v~ 281 (737)
T KOG1524|consen 223 SAAEEYAITSVAFNPEKDYLLWSYNTARFSSP-----------------RVGSIFNLSWSADGTQATCGTSTGQLI 281 (737)
T ss_pred CChhccceeeeeeccccceeeeeeeeeeecCC-----------------CccceEEEEEcCCCceeeccccCceEE
Confidence 3468999999887655444445552221 235788999999999999888777333
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.7e-09 Score=126.45 Aligned_cols=205 Identities=16% Similarity=0.101 Sum_probs=130.0
Q ss_pred CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCC---CcEEEEECCCCceEEEEecccCccceeeeecCc
Q 001349 833 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD---KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNS 909 (1094)
Q Consensus 833 g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D---gtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~ 909 (1094)
..|.+||..+. ..+.+..+...+.+.+|+|||+.|+.++.+ ..|.+||+.+++...+... ...+...
T Consensus 176 ~~L~~~D~dG~---~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~--~g~~~~~----- 245 (427)
T PRK02889 176 YQLQISDADGQ---NAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANF--KGSNSAP----- 245 (427)
T ss_pred cEEEEECCCCC---CceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecC--CCCccce-----
Confidence 46777887554 334455678889999999999999887753 3599999998864443322 2233333
Q ss_pred eEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEE--ECCCCceeEEeccceeecCCCCCeEEE
Q 001349 910 ILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEI--DLATGTFATIQTGHRKLLGKANPVHAL 987 (1094)
Q Consensus 910 ~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iw--Dl~~~~~~~~~~~~~~~~~h~~~V~sl 987 (1094)
.|+|||+.++. +.+.+|...+| |+.++.. ..+..+.......
T Consensus 246 --~~SPDG~~la~---------------------------~~~~~g~~~Iy~~d~~~~~~-------~~lt~~~~~~~~~ 289 (427)
T PRK02889 246 --AWSPDGRTLAV---------------------------ALSRDGNSQIYTVNADGSGL-------RRLTQSSGIDTEP 289 (427)
T ss_pred --EECCCCCEEEE---------------------------EEccCCCceEEEEECCCCCc-------EECCCCCCCCcCe
Confidence 39999987532 33445554444 5554443 2333344445677
Q ss_pred EEeCCccEEEEEECCCCEEEEEEC--CCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCC---eEEEEECCCCcEEEEec
Q 001349 988 QVHNGLVYTASTSLDGAAVKMWST--SNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGG---TVEIWDQKRQIRIETLQ 1060 (1094)
Q Consensus 988 ~fs~~~~~las~s~Dg~~I~iwd~--~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg---~I~vwd~~t~~~~~~l~ 1060 (1094)
.|+||+..++..+..++...+|.+ .++................|+|| +++..+.++ .|++||+.+++... +.
T Consensus 290 ~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt 368 (427)
T PRK02889 290 FFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LT 368 (427)
T ss_pred EEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-cc
Confidence 899999988766654345566654 44443222223333446789988 666555443 69999999887543 32
Q ss_pred ccCCcceEEEEEcCCCCEEEEEeCCC
Q 001349 1061 TGTSGKVQCMALDDNEEFLVIGTSDG 1086 (1094)
Q Consensus 1061 ~~h~~~I~~l~~Spdg~~L~sgs~DG 1086 (1094)
.+ .......|+|||+.|+.++.++
T Consensus 369 ~~--~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 369 DT--TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred CC--CCccCceECCCCCEEEEEEecC
Confidence 22 2346789999999988777554
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.4e-10 Score=126.19 Aligned_cols=247 Identities=15% Similarity=0.190 Sum_probs=175.5
Q ss_pred eeecccCCCcEEEEEEeC--CEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEec--CCCEEEEEeCCCcEEE
Q 001349 806 VHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ--SGEMLYSGSLDKTARV 881 (1094)
Q Consensus 806 ~~~~~~h~~~V~~l~fsp--d~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fsp--dg~~LaSgs~DgtI~v 881 (1094)
...+..|.|.|..|.|+. +.++||+.|..|.+||...+. ..+.-..+|...|..-.|-| +...+++++.||.|++
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~-~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS-PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccC-cccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 356678999999999997 599999999999999998874 33444568999999999988 4568999999999998
Q ss_pred EECCCCc-eE-EEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEE
Q 001349 882 WSIGNEE-IH-CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQE 959 (1094)
Q Consensus 882 Wdi~~~~-~~-~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~i 959 (1094)
=.+.... .. ......|.++|..++ ..|+. +..+++++.|+.+.-
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhkla-------v~p~s---------------------------p~~f~S~geD~~v~~ 259 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLA-------VEPDS---------------------------PKPFLSCGEDAVVFH 259 (559)
T ss_pred eeeccccceecceecccccCccceee-------ecCCC---------------------------CCcccccccccceee
Confidence 7764322 11 233344555555555 33332 235899999999999
Q ss_pred EECCCCceeEEeccceeecCCCC---CeEEEEEeCCcc-EEEEEECCCCEEEEEECCCCe------EEEEec-------C
Q 001349 960 IDLATGTFATIQTGHRKLLGKAN---PVHALQVHNGLV-YTASTSLDGAAVKMWSTSNYN------MVGSLP-------T 1022 (1094)
Q Consensus 960 wDl~~~~~~~~~~~~~~~~~h~~---~V~sl~fs~~~~-~las~s~Dg~~I~iwd~~~~~------~~~~~~-------~ 1022 (1094)
+|++++.....+. ....+.. ..+.++.+|... .+++++.|. .+++||.+.-. .+.++. .
T Consensus 260 ~Dlr~~~pa~~~~---cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dq-f~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~ 335 (559)
T KOG1334|consen 260 IDLRQDVPAEKFV---CREADEKERVGLYTIAVDPRNTNEFAVGGSDQ-FARVYDQRRIDKEENNGVLDKFCPHHLVEDD 335 (559)
T ss_pred eeeccCCccceee---eeccCCccceeeeeEecCCCCccccccCChhh-hhhhhcccchhhccccchhhhcCCccccccC
Confidence 9999887654433 1122333 467788887554 677777775 99999987522 123332 2
Q ss_pred CCCEEEEEEeCC--EEEEEEcCCeEEEEECCC--C----------cEEEE-ecccCCc--ceEEEEE-cCCCCEEEEEeC
Q 001349 1023 LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKR--Q----------IRIET-LQTGTSG--KVQCMAL-DDNEEFLVIGTS 1084 (1094)
Q Consensus 1023 ~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t--~----------~~~~~-l~~~h~~--~I~~l~~-Spdg~~L~sgs~ 1084 (1094)
...|++++++.+ -+.++..|-.|+++.... | ..+.. + .||.. .|.++-| -|...++++|++
T Consensus 336 ~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vY-KGHrN~~TVKgVNFfGPrsEyVvSGSD 414 (559)
T KOG1334|consen 336 PVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVY-KGHRNSRTVKGVNFFGPRSEYVVSGSD 414 (559)
T ss_pred cccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhh-cccccccccceeeeccCccceEEecCc
Confidence 456999999966 466667788899996432 2 22333 4 47765 5767754 678899999999
Q ss_pred CCcEEEEe
Q 001349 1085 DGRIQAWG 1092 (1094)
Q Consensus 1085 DG~I~iWd 1092 (1094)
=|.|.||+
T Consensus 415 CGhIFiW~ 422 (559)
T KOG1334|consen 415 CGHIFIWD 422 (559)
T ss_pred cceEEEEe
Confidence 99999997
|
|
| >TIGR00599 rad18 DNA repair protein rad18 | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.1e-11 Score=137.16 Aligned_cols=72 Identities=22% Similarity=0.505 Sum_probs=64.2
Q ss_pred CCCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHhCC
Q 001349 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNP 232 (1094)
Q Consensus 159 ~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~~~ 232 (1094)
.+...+.||||.++|.+||+++|||+||..||..|+.. ...||.|+..+....+. +|..|.++|+.|+...+
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr-~N~~L~~iVe~~~~~R~ 93 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLR-SNWLVSEIVESFKNLRP 93 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCc-cchHHHHHHHHHHHhhH
Confidence 45568999999999999999999999999999999986 44799999999888886 99999999999986543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.8e-11 Score=122.50 Aligned_cols=59 Identities=25% Similarity=0.480 Sum_probs=50.4
Q ss_pred CCCceeccCccccccCcEEcCCcccccHHhHHHHHHh---------------CCCCCCCCCcCCCCCCCCChhHH
Q 001349 160 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIER---------------GNSSCPITRQKLSSTKLPKTNYV 219 (1094)
Q Consensus 160 ~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~---------------~~~~CP~c~~~~~~~~~~~pN~~ 219 (1094)
..+++.||||++.++|||+++|||.||+.||.+|+.. +...||.|+..++...++ |.+.
T Consensus 15 ~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~Lv-Piyg 88 (193)
T PLN03208 15 SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLV-PIYG 88 (193)
T ss_pred CCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEE-Eeec
Confidence 3458999999999999999999999999999999853 134699999999988886 7653
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.1e-10 Score=127.61 Aligned_cols=122 Identities=18% Similarity=0.237 Sum_probs=105.3
Q ss_pred HHHHHHhhhccccccccccCcEEEEeeCCCCeEEEeCC---cceeecccCCCcEEEEEEeC---C-EEEEEECCCeEEEE
Q 001349 766 KDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFR---D-KIFSGHSDGTIKVW 838 (1094)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~---~~~~~~~~h~~~V~~l~fsp---d-~LaSgs~Dg~I~vW 838 (1094)
+..+.+|...++...+..+|..+++|+.|-.+.|||.- ....+-.+|.+.|.++.|-| | .++||..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 35567888899999999999999999999999999986 33456679999999999998 3 99999999999999
Q ss_pred ecCC--------CcceeEEEecccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCC
Q 001349 839 TGRG--------SILHLIQQIREHTKAVTGLAILQSG-EMLYSGSLDKTARVWSIGNE 887 (1094)
Q Consensus 839 d~~t--------~~~~~~~~l~~H~~~V~sv~fspdg-~~LaSgs~DgtI~vWdi~~~ 887 (1094)
|+.. +.......+..|+..|..++..|++ +.+.+++.||+|+-+|++..
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp 180 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP 180 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence 9974 1224556678899999999999987 89999999999999999874
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.7e-09 Score=115.40 Aligned_cols=194 Identities=15% Similarity=0.247 Sum_probs=138.0
Q ss_pred CCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEec-ccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCc
Q 001349 813 NGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIR-EHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEE 888 (1094)
Q Consensus 813 ~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~-~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~ 888 (1094)
+..+..++|++. .++++..|-+|++||-.... ...++ .....|++++|-| .+.-|+.|+..| |.+|.....-
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~---pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tl 173 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC---PTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTL 173 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCC---CceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccc
Confidence 345667888885 78899999999999987642 22222 2456799999999 456788888765 8999876521
Q ss_pred eEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCcee
Q 001349 889 IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFA 968 (1094)
Q Consensus 889 ~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~ 968 (1094)
....+ ..+...+...+
T Consensus 174 -------n~~r~------------------------------------------------~~~~s~~~~qv--------- 189 (445)
T KOG2139|consen 174 -------NANRN------------------------------------------------IRMMSTHHLQV--------- 189 (445)
T ss_pred -------ccccc------------------------------------------------cccccccchhh---------
Confidence 00000 00001111111
Q ss_pred EEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeE
Q 001349 969 TIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTV 1045 (1094)
Q Consensus 969 ~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I 1045 (1094)
....|| .+|+++.|.+|+..+++++.++..|.|||..++..+.-.. +.+.++-+.|||| ++++++-|+..
T Consensus 190 ------l~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davf 262 (445)
T KOG2139|consen 190 ------LQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVF 262 (445)
T ss_pred ------eeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEeccccee
Confidence 122345 6899999999999999999999999999999988776653 6788999999998 89999999999
Q ss_pred EEEECC-CCcEEEEecccCCcceEEEEEcCCCCEEEEEe
Q 001349 1046 EIWDQK-RQIRIETLQTGTSGKVQCMALDDNEEFLVIGT 1083 (1094)
Q Consensus 1046 ~vwd~~-t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs 1083 (1094)
++|+.. +.....-. . ..+.|...+|+|+|.+|+.+.
T Consensus 263 rlw~e~q~wt~erw~-l-gsgrvqtacWspcGsfLLf~~ 299 (445)
T KOG2139|consen 263 RLWQENQSWTKERWI-L-GSGRVQTACWSPCGSFLLFAC 299 (445)
T ss_pred eeehhcccceeccee-c-cCCceeeeeecCCCCEEEEEE
Confidence 999544 33333333 2 345899999999998876544
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.3e-08 Score=112.61 Aligned_cols=287 Identities=12% Similarity=0.107 Sum_probs=171.6
Q ss_pred cCcEEEEeeCCCCeEEEeCCcceee--cccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEE
Q 001349 784 EMVKVLSNGHDSSADFWNHRELVHV--DSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGL 861 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~~~~~~--~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv 861 (1094)
.+.+++.++.+|.+.-+|..+.... ...............+.++.++.+|.+..||..+| +.+...... +.+.+.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG--~~~W~~~~~-~~~~~~ 140 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDG--KELWRAKLS-SEVLSP 140 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCC--cEeeeeccC-ceeecC
Confidence 4678888888999998987633222 22222222234445568889999999999999998 555554322 222211
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCcccee------eeecCceEEEe-eCCCeEEEEEeCCeEEEEcC
Q 001349 862 AILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQN------LAVSNSILCFI-PQGAGIKVHLRNGKTKLLNS 934 (1094)
Q Consensus 862 ~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~------v~~~~~~~~fs-pdg~~l~~~~~~g~i~l~~~ 934 (1094)
-.. .+..++.++.||.+..||..+|+..-.. ....+... .......+.+. .+|...+....+|.. +|..
T Consensus 141 p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~--~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~-~W~~ 216 (377)
T TIGR03300 141 PLV-ANGLVVVRTNDGRLTALDAATGERLWTY--SRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQP-LWEQ 216 (377)
T ss_pred CEE-ECCEEEEECCCCeEEEEEcCCCceeeEE--ccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCE-eeee
Confidence 111 3557777888999999999998632221 11111110 01111111121 223322222233432 3321
Q ss_pred CC--------------CceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEE
Q 001349 935 SK--------------YPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS 1000 (1094)
Q Consensus 935 ~~--------------~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s 1000 (1094)
.. ......+.++.+++++.+|.+..||..+|+...... .. .........+. +..++
T Consensus 217 ~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~----~~----~~~~p~~~~~~--vyv~~ 286 (377)
T TIGR03300 217 RVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD----AS----SYQGPAVDDNR--LYVTD 286 (377)
T ss_pred ccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec----cC----CccCceEeCCE--EEEEC
Confidence 10 011223456789999999999999999998765332 11 11223333333 33344
Q ss_pred CCCCEEEEEECCCCeEEEEec--CCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcce-EEEEEcCCCC
Q 001349 1001 LDGAAVKMWSTSNYNMVGSLP--TLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKV-QCMALDDNEE 1077 (1094)
Q Consensus 1001 ~Dg~~I~iwd~~~~~~~~~~~--~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I-~~l~~Spdg~ 1077 (1094)
.+| .+..+|..+++.+.... ......+..+..+.+++++.+|.|++||..+|+.+..++ .+...+ .+.++. + .
T Consensus 287 ~~G-~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~-~~~~~~~~sp~~~-~-~ 362 (377)
T TIGR03300 287 ADG-VVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLK-TDGSGIASPPVVV-G-D 362 (377)
T ss_pred CCC-eEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEE-cCCCccccCCEEE-C-C
Confidence 565 99999999998887663 223344455567799999999999999999999998885 333233 333333 3 4
Q ss_pred EEEEEeCCCcEEEE
Q 001349 1078 FLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1078 ~L~sgs~DG~I~iW 1091 (1094)
.|+.++.||.|+.|
T Consensus 363 ~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 363 GLLVQTRDGDLYAF 376 (377)
T ss_pred EEEEEeCCceEEEe
Confidence 58889999999876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.8e-09 Score=112.32 Aligned_cols=313 Identities=15% Similarity=0.182 Sum_probs=192.0
Q ss_pred HhhhccccccccccCcEEEEeeCCCCeEEEeCCccee----ecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCC-
Q 001349 771 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVH----VDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS- 843 (1094)
Q Consensus 771 ~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~~~----~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~- 843 (1094)
++...+.-.-+.+-..-+++.+.|.+++||--....+ +......+++++.+.++ .|+.|-..|++.-+.+...
T Consensus 22 G~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedf 101 (404)
T KOG1409|consen 22 GSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDF 101 (404)
T ss_pred CchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhh
Confidence 3333333334444455788999999999996542222 22334678999999987 8999999999998865431
Q ss_pred -cceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCC--CeE
Q 001349 844 -ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQG--AGI 920 (1094)
Q Consensus 844 -~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg--~~l 920 (1094)
+....+.+..|...|..+.|+....++++.+.|..+.--..+.+.. +..+....+-....+.-. ..|.-|- +..
T Consensus 102 nkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~--lg~Y~~~~~~t~~~~d~~-~~fvGd~~gqvt 178 (404)
T KOG1409|consen 102 NKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNR--LGGYNFETPASALQFDAL-YAFVGDHSGQIT 178 (404)
T ss_pred hhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCc--ccceEeeccCCCCceeeE-EEEecccccceE
Confidence 2256677889999999999999999999999998765444444421 000000000000000000 1121111 100
Q ss_pred EEEEeC---C-eEEEEcCCCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCcc
Q 001349 921 KVHLRN---G-KTKLLNSSKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLV 994 (1094)
Q Consensus 921 ~~~~~~---g-~i~l~~~~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~ 994 (1094)
...... + ..++-.+...+.++.+.+ +.+++|..|..|.+||+..++... ....+|...|..+..-+-..
T Consensus 179 ~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~-----~el~gh~~kV~~l~~~~~t~ 253 (404)
T KOG1409|consen 179 MLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTA-----YELQGHNDKVQALSYAQHTR 253 (404)
T ss_pred EEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCccee-----eeeccchhhhhhhhhhhhhe
Confidence 000000 1 112234567889999985 569999999999999998766543 46678999999998888888
Q ss_pred EEEEEECCCCEEEEEECCCCeEEE----------Eec--------------------C----CCCEEEEEEeCC--EEEE
Q 001349 995 YTASTSLDGAAVKMWSTSNYNMVG----------SLP--------------------T----LSEVRAMVVSSE--LVYL 1038 (1094)
Q Consensus 995 ~las~s~Dg~~I~iwd~~~~~~~~----------~~~--------------------~----~~~v~~l~~spd--~l~s 1038 (1094)
.+.+++.|| .|.+||++...... ... | -+...+...+.+ ...+
T Consensus 254 ~l~S~~edg-~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~ 332 (404)
T KOG1409|consen 254 QLISCGEDG-GIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPT 332 (404)
T ss_pred eeeeccCCC-eEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCcccccc
Confidence 889999997 89999986432110 000 0 011111111111 1112
Q ss_pred EEcCCeEEEEE--------CCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1039 GCKGGTVEIWD--------QKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1039 gs~dg~I~vwd--------~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
-+..-.+|+-| ... .++..+...|. .|+.+.+..+-..|+|+|.|..|+|||+.
T Consensus 333 mg~e~~vR~~~~c~~~i~~~~~-t~LA~phei~t-gItamhlqetlglLvTsG~~Rvi~iwd~~ 394 (404)
T KOG1409|consen 333 MGFEFSVRVCDSCYPTIKDEER-TPLAIPHEIKT-GITAMHLQETLGLLVTSGTDRVIKIWDVR 394 (404)
T ss_pred ccceeEEEEecccchhhhcCCC-Ccccccccccc-ceeEEEhhhhccceeecCCceEEEEEech
Confidence 22222344443 322 33444433333 69999998888999999999999999974
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.7e-08 Score=114.59 Aligned_cols=251 Identities=12% Similarity=0.145 Sum_probs=155.3
Q ss_pred EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceee
Q 001349 825 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNL 904 (1094)
Q Consensus 825 ~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v 904 (1094)
++++-..+|.|.|.|..+. +.+..+......-..+.|+|||+++++++.||.|.+||+.+++ .+..........++
T Consensus 8 ~~V~~~~~~~v~viD~~t~--~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~--~v~~i~~G~~~~~i 83 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATN--KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK--VVATIKVGGNPRGI 83 (369)
T ss_dssp EEEEEGGGTEEEEEETTT---SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS--EEEEEE-SSEEEEE
T ss_pred EEEEecCCCEEEEEECCCC--eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc--EEEEEecCCCcceE
Confidence 3456677899999999998 7888887654444557899999999999999999999999985 33333333344555
Q ss_pred eecCceEEEeeCCCeEEEEE-eCCeEEEEcCCC-------------------CceEEEEeC--CEEEEE-EcCCeEEEEE
Q 001349 905 AVSNSILCFIPQGAGIKVHL-RNGKTKLLNSSK-------------------YPKCLALVQ--GKVYCG-CQDGAIQEID 961 (1094)
Q Consensus 905 ~~~~~~~~fspdg~~l~~~~-~~g~i~l~~~~~-------------------~v~~l~~s~--~~l~sg-s~Dg~I~iwD 961 (1094)
+ +++||+++++++ ..+.+.++|... .+..+..++ ..+++. -..+.|-+.|
T Consensus 84 ~-------~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd 156 (369)
T PF02239_consen 84 A-------VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD 156 (369)
T ss_dssp E-------E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred E-------EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence 5 999999998776 458888888532 122333332 223333 3347777777
Q ss_pred CCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-----CCCCEEEEEEeCC--
Q 001349 962 LATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-----TLSEVRAMVVSSE-- 1034 (1094)
Q Consensus 962 l~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-----~~~~v~~l~~spd-- 1034 (1094)
......... +............|+|++.|+..+......|-++|..+++.+..+. |......+ .+|.
T Consensus 157 y~d~~~~~~-----~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g 230 (369)
T PF02239_consen 157 YSDPKNLKV-----TTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFG 230 (369)
T ss_dssp TTTSSCEEE-----EEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTE
T ss_pred eccccccce-----eeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcc
Confidence 766543321 1222335677889999998877665545599999999998877654 22233322 2222
Q ss_pred ----------EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEE----eCCCcEEEEeCC
Q 001349 1035 ----------LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIG----TSDGRIQAWGLS 1094 (1094)
Q Consensus 1035 ----------~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sg----s~DG~I~iWdls 1094 (1094)
..++.-..+.+.+||..+.+.+.++. ...+. .-+..+||++++.+. ...++|.++|..
T Consensus 231 ~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~-~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~ 302 (369)
T PF02239_consen 231 PVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIP-TQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKK 302 (369)
T ss_dssp EEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE--SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECC
T ss_pred eEEeeccccceecccccCCccccchhhcCeEEEEEE-CCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECc
Confidence 22233333456689999999999995 33444 778889999999988 445889999863
|
... |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.4e-08 Score=118.47 Aligned_cols=206 Identities=17% Similarity=0.106 Sum_probs=136.4
Q ss_pred CCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCC---CcEEEEECCCCceEEEEecccCccceeeeecC
Q 001349 832 DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD---KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSN 908 (1094)
Q Consensus 832 Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D---gtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~ 908 (1094)
...|.++|..+. ..+.+..+...+.+..|+|||++|+.++.+ ..|++||+.+++...+.. ....+....
T Consensus 169 ~~~l~~~d~~g~---~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~--~~~~~~~~~--- 240 (417)
T TIGR02800 169 RYELQVADYDGA---NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS--FPGMNGAPA--- 240 (417)
T ss_pred cceEEEEcCCCC---CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec--CCCCccceE---
Confidence 346888888655 234455677789999999999999887654 479999999885443332 223333333
Q ss_pred ceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEc--CCeEEEEECCCCceeEEeccceeecCCCCCeEE
Q 001349 909 SILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQ--DGAIQEIDLATGTFATIQTGHRKLLGKANPVHA 986 (1094)
Q Consensus 909 ~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~--Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~s 986 (1094)
|+|||+.++. +.+. +..|++||+.++... .+..+......
T Consensus 241 ----~spDg~~l~~---------------------------~~~~~~~~~i~~~d~~~~~~~-------~l~~~~~~~~~ 282 (417)
T TIGR02800 241 ----FSPDGSKLAV---------------------------SLSKDGNPDIYVMDLDGKQLT-------RLTNGPGIDTE 282 (417)
T ss_pred ----ECCCCCEEEE---------------------------EECCCCCccEEEEECCCCCEE-------ECCCCCCCCCC
Confidence 8999886533 2222 346888998877643 22233334456
Q ss_pred EEEeCCccEEEEEECCCC--EEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCC---eEEEEECCCCcEEEEe
Q 001349 987 LQVHNGLVYTASTSLDGA--AVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGG---TVEIWDQKRQIRIETL 1059 (1094)
Q Consensus 987 l~fs~~~~~las~s~Dg~--~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg---~I~vwd~~t~~~~~~l 1059 (1094)
..|++++..++..+..++ .|.+||+.+++......+........|+|+ +++.++.++ .|.+||+.++... .+
T Consensus 283 ~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l 361 (417)
T TIGR02800 283 PSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VL 361 (417)
T ss_pred EEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-Ec
Confidence 789999988776654332 688888877765433335566778899988 666666654 7999999886543 33
Q ss_pred cccCCcceEEEEEcCCCCEEEEEeCCC
Q 001349 1060 QTGTSGKVQCMALDDNEEFLVIGTSDG 1086 (1094)
Q Consensus 1060 ~~~h~~~I~~l~~Spdg~~L~sgs~DG 1086 (1094)
. .. .......|+|||++|+.++.++
T Consensus 362 ~-~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 362 T-DT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred c-CC-CCCCCceECCCCCEEEEEEeCC
Confidence 2 11 2345568999999888777654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.7e-07 Score=105.05 Aligned_cols=274 Identities=11% Similarity=0.184 Sum_probs=169.2
Q ss_pred EEEeeCC----CCeEEEeCC--c----ceeecccCCCcEEEEEEeCC--EEEEEEC----CCeEEEEecCC--CcceeEE
Q 001349 788 VLSNGHD----SSADFWNHR--E----LVHVDSSENGKVLSIACFRD--KIFSGHS----DGTIKVWTGRG--SILHLIQ 849 (1094)
Q Consensus 788 l~s~s~d----g~I~vWd~~--~----~~~~~~~h~~~V~~l~fspd--~LaSgs~----Dg~I~vWd~~t--~~~~~~~ 849 (1094)
++.|++. +.|.+|+++ . .... .........++++|+ +|++... +|.|..|++.. +.+..+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~-~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQT-VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEE-EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeee-ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4455555 789998883 1 1111 123455677889886 7777766 57999998775 5555666
Q ss_pred EecccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCC-CceEEEE-ecccC--ccc--eeeeecCceEEEeeCCCeEEE
Q 001349 850 QIREHTKAVTGLAILQSGEMLYSGSL-DKTARVWSIGN-EEIHCVQ-VHDIK--DQI--QNLAVSNSILCFIPQGAGIKV 922 (1094)
Q Consensus 850 ~l~~H~~~V~sv~fspdg~~LaSgs~-DgtI~vWdi~~-~~~~~~~-~~~~~--~~V--~~v~~~~~~~~fspdg~~l~~ 922 (1094)
...........++++|++++|+++.. +|+|.++++.. |.+.... ...+. .+. ......+..+.|+|+|+++.+
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 66544556678999999999999875 89999999987 4322221 11110 000 000111123347888876533
Q ss_pred EEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCc--eeEEeccceeecCCCCCeEEEEEeCCccEEEEEE
Q 001349 923 HLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGT--FATIQTGHRKLLGKANPVHALQVHNGLVYTASTS 1000 (1094)
Q Consensus 923 ~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~--~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s 1000 (1094)
.. -....|.+|++.... ... .. ............+.|+|++.++....
T Consensus 161 ~d---------------------------lG~D~v~~~~~~~~~~~l~~--~~-~~~~~~G~GPRh~~f~pdg~~~Yv~~ 210 (345)
T PF10282_consen 161 PD---------------------------LGADRVYVYDIDDDTGKLTP--VD-SIKVPPGSGPRHLAFSPDGKYAYVVN 210 (345)
T ss_dssp EE---------------------------TTTTEEEEEEE-TTS-TEEE--EE-EEECSTTSSEEEEEE-TTSSEEEEEE
T ss_pred Ee---------------------------cCCCEEEEEEEeCCCceEEE--ee-ccccccCCCCcEEEEcCCcCEEEEec
Confidence 22 234578888887655 221 10 11123345678899999998887777
Q ss_pred CCCCEEEEEECC--CCe--EEEEec-------CCCCEEEEEEeCC--EEEEEE-cCCeEEEEECC--CCc--EEEEeccc
Q 001349 1001 LDGAAVKMWSTS--NYN--MVGSLP-------TLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQK--RQI--RIETLQTG 1062 (1094)
Q Consensus 1001 ~Dg~~I~iwd~~--~~~--~~~~~~-------~~~~v~~l~~spd--~l~sgs-~dg~I~vwd~~--t~~--~~~~l~~~ 1062 (1094)
...++|.+|++. ++. .+..+. .......+.++|| +++++. ..+.|.+|++. +++ .+..+..
T Consensus 211 e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~- 289 (345)
T PF10282_consen 211 ELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT- 289 (345)
T ss_dssp TTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE-
T ss_pred CCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC-
Confidence 666799999988 443 223332 1236889999998 666654 57899999983 333 3344432
Q ss_pred CCcceEEEEEcCCCCEEEEEe-CCCcEEEEeC
Q 001349 1063 TSGKVQCMALDDNEEFLVIGT-SDGRIQAWGL 1093 (1094)
Q Consensus 1063 h~~~I~~l~~Spdg~~L~sgs-~DG~I~iWdl 1093 (1094)
.......++++|+|++|++++ .++.|.+|++
T Consensus 290 ~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 290 GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred CCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 233589999999999999887 5678999875
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.8e-08 Score=105.61 Aligned_cols=108 Identities=18% Similarity=0.320 Sum_probs=86.1
Q ss_pred CCCeEEEEEeCCccEEEEEE--CCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEc---CCeEEEEECCCC
Q 001349 981 ANPVHALQVHNGLVYTASTS--LDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCK---GGTVEIWDQKRQ 1053 (1094)
Q Consensus 981 ~~~V~sl~fs~~~~~las~s--~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~---dg~I~vwd~~t~ 1053 (1094)
.++|.+++|+|++..++... .+ +.|.+||++ ++.+..+. ...+..+.|+|+ ++++|+. .|.|.+||..+.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~-~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMP-AKVTLYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK 135 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCC-cccEEEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 45799999999988765442 34 489999996 66666665 456788999998 7777764 467999999999
Q ss_pred cEEEEecccCCcceEEEEEcCCCCEEEEEeC------CCcEEEEeCC
Q 001349 1054 IRIETLQTGTSGKVQCMALDDNEEFLVIGTS------DGRIQAWGLS 1094 (1094)
Q Consensus 1054 ~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~------DG~I~iWdls 1094 (1094)
+.+..+. |. .++.++|||||++|++++. |+.++||+++
T Consensus 136 ~~i~~~~--~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 136 KKISTFE--HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EEeeccc--cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 9888873 44 4789999999999998875 7889999863
|
|
| >KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.8e-11 Score=124.11 Aligned_cols=69 Identities=17% Similarity=0.341 Sum_probs=62.7
Q ss_pred CCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHh
Q 001349 160 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQ 230 (1094)
Q Consensus 160 ~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~ 230 (1094)
+++-+.|-||.++|+-||+++||||||..||+.++.. +..||.|...++...+. .|+.|..+|+.+.-.
T Consensus 20 lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr-~n~il~Eiv~S~~~~ 88 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLR-NNRILDEIVKSLNFA 88 (442)
T ss_pred hHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhh-hhhHHHHHHHHHHHH
Confidence 4457899999999999999999999999999999987 66799999999999996 999999999998643
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.6e-08 Score=108.42 Aligned_cols=291 Identities=12% Similarity=0.106 Sum_probs=174.1
Q ss_pred ccccccCcEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCC--EEEE-----EECC-----CeEEEEecCCCcce
Q 001349 779 SPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFS-----GHSD-----GTIKVWTGRGSILH 846 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd--~LaS-----gs~D-----g~I~vWd~~t~~~~ 846 (1094)
..++..|..+ ..+.+..++|++.......+......++++.|+|- +|.+ -..+ -.+.+|++.++ .
T Consensus 40 ~~~S~~G~lf-A~~~~~~v~i~~~~~~~~~lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~--~ 116 (566)
T KOG2315|consen 40 FAYSNNGRLF-AYSDNQVVKVFEIATLKVVLCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETG--V 116 (566)
T ss_pred EEEcCCCcEE-EEEcCCeEEEEEccCCcEEEEeccceeeeeeecccccccccccccccccCCCCCCCceeeeeeccc--e
Confidence 3444445444 45667788888887543333333448899999983 4433 1223 34679999996 3
Q ss_pred eEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCC--eEEEEE
Q 001349 847 LIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGA--GIKVHL 924 (1094)
Q Consensus 847 ~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~--~l~~~~ 924 (1094)
....++.....-|+..|+.|..+.+--. .+.+.+|+...-+ .....-+...+..+. ++|.+. .+++..
T Consensus 117 ~~s~~q~k~Q~~W~~qfs~dEsl~arlv-~nev~f~~~~~f~--~~~~kl~~~~i~~f~-------lSpgp~~~~vAvyv 186 (566)
T KOG2315|consen 117 QRSQIQKKMQNGWVPQFSIDESLAARLV-SNEVQFYDLGSFK--TIQHKLSVSGITMLS-------LSPGPEPPFVAVYV 186 (566)
T ss_pred ehhheehhhhcCcccccccchhhhhhhh-cceEEEEecCCcc--ceeeeeeccceeeEE-------ecCCCCCceEEEEc
Confidence 4444433222227899998876443222 2569999988743 111111234455554 444422 333322
Q ss_pred e-----CCeEEEEcCC---------------CCceEEEEeC---CEEE--EEEcC---------CeEEEEECCCCceeEE
Q 001349 925 R-----NGKTKLLNSS---------------KYPKCLALVQ---GKVY--CGCQD---------GAIQEIDLATGTFATI 970 (1094)
Q Consensus 925 ~-----~g~i~l~~~~---------------~~v~~l~~s~---~~l~--sgs~D---------g~I~iwDl~~~~~~~~ 970 (1094)
- -+.+++|.-. ..-..+.|+. +.|+ +...| .+++++++......
T Consensus 187 Pe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~-- 264 (566)
T KOG2315|consen 187 PEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVS-- 264 (566)
T ss_pred cCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEE--
Confidence 1 1345666532 1112333442 2232 33333 35777777733332
Q ss_pred eccceeecCCCCCeEEEEEeCCccEEEE-EECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEc---CCe
Q 001349 971 QTGHRKLLGKANPVHALQVHNGLVYTAS-TSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCK---GGT 1044 (1094)
Q Consensus 971 ~~~~~~~~~h~~~V~sl~fs~~~~~las-~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~---dg~ 1044 (1094)
.-....++|+++.|++++.-++. .+.--..+.|||++ +.++..+. .++-+++-|+|. +++.++. .|.
T Consensus 265 -----V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~-egpRN~~~fnp~g~ii~lAGFGNL~G~ 337 (566)
T KOG2315|consen 265 -----VPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP-EGPRNTAFFNPHGNIILLAGFGNLPGD 337 (566)
T ss_pred -----EecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC-CCCccceEECCCCCEEEEeecCCCCCc
Confidence 22234689999999988854433 33333589999985 45555553 445567888887 5555554 389
Q ss_pred EEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeC------CCcEEEEeCC
Q 001349 1045 VEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTS------DGRIQAWGLS 1094 (1094)
Q Consensus 1045 I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~------DG~I~iWdls 1094 (1094)
+.|||+.+.+++..+.. ..-+-+.|+|||.+++|++. |+.++||+++
T Consensus 338 mEvwDv~n~K~i~~~~a---~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 338 MEVWDVPNRKLIAKFKA---ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred eEEEeccchhhcccccc---CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 99999999999888852 24577899999999999875 7889999874
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-08 Score=122.04 Aligned_cols=222 Identities=14% Similarity=0.187 Sum_probs=155.9
Q ss_pred EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceee
Q 001349 825 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNL 904 (1094)
Q Consensus 825 ~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v 904 (1094)
+++++..-+.+.+=+.... . +..-.+.|....+..+...++.++.+..+-+||...+.. ...........-.
T Consensus 63 ~~v~~~~~~~v~~~~~~~~---~---~~~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~--~~~i~~~er~~l~ 134 (967)
T KOG0974|consen 63 KIVTCAKSDEVYVKEASNQ---I---IERFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSV--LSKIQSDERCTLY 134 (967)
T ss_pred eEEEEEeecceeecchhhh---h---hhhccccccccchhhhcceEEEEEcCceEEEEecccCce--ehhcCCCceEEEE
Confidence 5556655444443332221 1 122334455556666778899999999999999987631 1111111111100
Q ss_pred eecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCe
Q 001349 905 AVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPV 984 (1094)
Q Consensus 905 ~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V 984 (1094)
. .-.+.+++ .+=++++|+.-+.|.+|+....... ..+.||.+.|
T Consensus 135 ~--~~~~g~s~----------------------------~~~~i~~gsv~~~iivW~~~~dn~p------~~l~GHeG~i 178 (967)
T KOG0974|consen 135 S--SLIIGDSA----------------------------EELYIASGSVFGEIIVWKPHEDNKP------IRLKGHEGSI 178 (967)
T ss_pred e--EEEEeccC----------------------------cEEEEEeccccccEEEEeccccCCc------ceecccCCce
Confidence 0 00000000 0114888999999999998832221 3578999999
Q ss_pred EEEEEeCCccEEEEEECCCCEEEEEECCCCeEEE--EecCCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEeccc
Q 001349 985 HALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVG--SLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTG 1062 (1094)
Q Consensus 985 ~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~--~~~~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~ 1062 (1094)
.++.++.++.++++.|.| +++++|++.+.+... -|.|...++.+.|.|+.+++++.|.+.++|+.. ++.+..+. +
T Consensus 179 F~i~~s~dg~~i~s~SdD-RsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~~-~~~l~~y~-~ 255 (967)
T KOG0974|consen 179 FSIVTSLDGRYIASVSDD-RSIRLWPIDSREVLGCTGFGHSARVWACCFLPNRIITVGEDCTCRVWGVN-GTQLEVYD-E 255 (967)
T ss_pred EEEEEccCCcEEEEEecC-cceeeeecccccccCcccccccceeEEEEeccceeEEeccceEEEEEecc-cceehhhh-h
Confidence 999999999999999987 699999999877654 456899999999999999999999999999654 44455674 5
Q ss_pred CC-cceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1063 TS-GKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1063 h~-~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
|. ..|+.++..++...++|++.||.+++||+
T Consensus 256 h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 256 HSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred hhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 54 47999999999999999999999999986
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.6e-08 Score=113.67 Aligned_cols=213 Identities=12% Similarity=0.040 Sum_probs=133.2
Q ss_pred eEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCC---CcEEEEECCCCceEEEEecccCccceeeeecCce
Q 001349 834 TIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD---KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSI 910 (1094)
Q Consensus 834 ~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D---gtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~ 910 (1094)
.|.++|..++. .+.+..+...+....|+|||+.|+..+.+ ..|.+||+.+++...+... ...+...
T Consensus 180 ~l~~~d~~g~~---~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~--~g~~~~~------ 248 (430)
T PRK00178 180 TLQRSDYDGAR---AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF--EGLNGAP------ 248 (430)
T ss_pred EEEEECCCCCC---ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC--CCCcCCe------
Confidence 47788887662 34455677889999999999999877654 3689999998864433222 2222223
Q ss_pred EEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEe
Q 001349 911 LCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVH 990 (1094)
Q Consensus 911 ~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs 990 (1094)
.|+|||+.++..... ..+..|.+||+.++.... +..+........|+
T Consensus 249 -~~SpDG~~la~~~~~-------------------------~g~~~Iy~~d~~~~~~~~-------lt~~~~~~~~~~~s 295 (430)
T PRK00178 249 -AWSPDGSKLAFVLSK-------------------------DGNPEIYVMDLASRQLSR-------VTNHPAIDTEPFWG 295 (430)
T ss_pred -EECCCCCEEEEEEcc-------------------------CCCceEEEEECCCCCeEE-------cccCCCCcCCeEEC
Confidence 399999876432211 112368888998876532 22333445667899
Q ss_pred CCccEEEEEECCC--CEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEc-CC--eEEEEECCCCcEEEEecccC
Q 001349 991 NGLVYTASTSLDG--AAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCK-GG--TVEIWDQKRQIRIETLQTGT 1063 (1094)
Q Consensus 991 ~~~~~las~s~Dg--~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~-dg--~I~vwd~~t~~~~~~l~~~h 1063 (1094)
|++..++..+..+ ..|.+||+.+++...............|+|| .++..+. ++ .|.+||+.+++. ..+...
T Consensus 296 pDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~- 373 (430)
T PRK00178 296 KDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTDT- 373 (430)
T ss_pred CCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccCC-
Confidence 9988776655432 2677888877764432222333445788988 5555443 33 588999988864 333222
Q ss_pred CcceEEEEEcCCCCEEEEEeCC-C--cEEEEeC
Q 001349 1064 SGKVQCMALDDNEEFLVIGTSD-G--RIQAWGL 1093 (1094)
Q Consensus 1064 ~~~I~~l~~Spdg~~L~sgs~D-G--~I~iWdl 1093 (1094)
.......|+|||++++..+.+ | .|.++++
T Consensus 374 -~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 374 -SLDESPSVAPNGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred -CCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 222356899999998766643 3 3555543
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.9e-07 Score=111.12 Aligned_cols=211 Identities=14% Similarity=0.082 Sum_probs=130.1
Q ss_pred eEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCC-C--cEEEEECCCCceEEEEecccCccceeeeecCce
Q 001349 834 TIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD-K--TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSI 910 (1094)
Q Consensus 834 ~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D-g--tI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~ 910 (1094)
.|.++|..+.. .+.+..+...+.+..|+|||+.|+..+.+ + .|.+||+.+++...+... ......
T Consensus 199 ~l~i~d~dG~~---~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~--~g~~~~------- 266 (448)
T PRK04792 199 QLMIADYDGYN---EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF--PGINGA------- 266 (448)
T ss_pred EEEEEeCCCCC---ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC--CCCcCC-------
Confidence 67777877653 23445567788999999999998876543 2 588899988764433322 222222
Q ss_pred EEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCC--eEEEEECCCCceeEEeccceeecCCCCCeEEEE
Q 001349 911 LCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDG--AIQEIDLATGTFATIQTGHRKLLGKANPVHALQ 988 (1094)
Q Consensus 911 ~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg--~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~ 988 (1094)
..|+|||+.++. +.+.+| .|.+||+.+++.. .+..+........
T Consensus 267 ~~wSPDG~~La~---------------------------~~~~~g~~~Iy~~dl~tg~~~-------~lt~~~~~~~~p~ 312 (448)
T PRK04792 267 PRFSPDGKKLAL---------------------------VLSKDGQPEIYVVDIATKALT-------RITRHRAIDTEPS 312 (448)
T ss_pred eeECCCCCEEEE---------------------------EEeCCCCeEEEEEECCCCCeE-------ECccCCCCccceE
Confidence 349999997643 233344 4778888877653 2233344556788
Q ss_pred EeCCccEEEEEECCC--CEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEE-cCC--eEEEEECCCCcEEEEecc
Q 001349 989 VHNGLVYTASTSLDG--AAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGC-KGG--TVEIWDQKRQIRIETLQT 1061 (1094)
Q Consensus 989 fs~~~~~las~s~Dg--~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs-~dg--~I~vwd~~t~~~~~~l~~ 1061 (1094)
|+||+..++..+..+ ..|.++|+.+++..............+|+|| +++..+ .++ .|.++|+.+++.. .+..
T Consensus 313 wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~ 391 (448)
T PRK04792 313 WHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTS 391 (448)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccC
Confidence 999998877665432 2577778877765432223333345789998 454443 344 4666788887643 3322
Q ss_pred cCCcceEEEEEcCCCCEEEEEeC-CCc--EEEEeC
Q 001349 1062 GTSGKVQCMALDDNEEFLVIGTS-DGR--IQAWGL 1093 (1094)
Q Consensus 1062 ~h~~~I~~l~~Spdg~~L~sgs~-DG~--I~iWdl 1093 (1094)
.. ......|+|||+.|+..+. +|. +.+++.
T Consensus 392 ~~--~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 392 TR--LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred CC--CCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 21 2234579999998876554 343 555554
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-07 Score=112.62 Aligned_cols=232 Identities=13% Similarity=0.048 Sum_probs=138.8
Q ss_pred CeEEEeCCc-ceeecccCCCcEEEEEEeCC--EEEEEE-CCC--eEEEEecCCCcceeEEEecccCCCeEEEEEecCCCE
Q 001349 796 SADFWNHRE-LVHVDSSENGKVLSIACFRD--KIFSGH-SDG--TIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEM 869 (1094)
Q Consensus 796 ~I~vWd~~~-~~~~~~~h~~~V~~l~fspd--~LaSgs-~Dg--~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~ 869 (1094)
.+.++|.+. ....+..+...+.+..|+|| .|+..+ .++ .|++||+.++....+..+. +......|+|||+.
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~---g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP---GINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC---CCcCCeeECCCCCE
Confidence 555667652 23455567788999999997 555443 333 5888999888443443333 33456899999997
Q ss_pred EEE-EeCCCc--EEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCC
Q 001349 870 LYS-GSLDKT--ARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQG 946 (1094)
Q Consensus 870 LaS-gs~Dgt--I~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~ 946 (1094)
|+. .+.+|. |.+||+.+++...+.. +....... .|+|||+.++.....+
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~--~~~~~~~p-------~wSpDG~~I~f~s~~~------------------- 327 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTRITR--HRAIDTEP-------SWHPDGKSLIFTSERG------------------- 327 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEECcc--CCCCccce-------EECCCCCEEEEEECCC-------------------
Confidence 764 566665 7778888876433322 12222223 3899998764432110
Q ss_pred EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCC--EEEEEECCCCeEEEEecCCC
Q 001349 947 KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGA--AVKMWSTSNYNMVGSLPTLS 1024 (1094)
Q Consensus 947 ~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~--~I~iwd~~~~~~~~~~~~~~ 1024 (1094)
....|.++|+.+++.... ++.++ ......|+|++.+++..+.+++ .|.++|+.++... .+....
T Consensus 328 ------g~~~Iy~~dl~~g~~~~L-----t~~g~--~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~ 393 (448)
T PRK04792 328 ------GKPQIYRVNLASGKVSRL-----TFEGE--QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTR 393 (448)
T ss_pred ------CCceEEEEECCCCCEEEE-----ecCCC--CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCC
Confidence 123566778877765422 11122 2335689999988877665443 4556788777643 333222
Q ss_pred CEEEEEEeCC--EE-EEEEcCC--eEEEEECCCCcEEEEecccCCcceEEEEEcC
Q 001349 1025 EVRAMVVSSE--LV-YLGCKGG--TVEIWDQKRQIRIETLQTGTSGKVQCMALDD 1074 (1094)
Q Consensus 1025 ~v~~l~~spd--~l-~sgs~dg--~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Sp 1074 (1094)
......|+|| .+ ++...+| .+++++. +|.....+. .+.+.+...+|+|
T Consensus 394 ~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~-~~~g~~~~p~Wsp 446 (448)
T PRK04792 394 LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLP-AGQGEVKSPAWSP 446 (448)
T ss_pred CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECc-CCCCCcCCCccCC
Confidence 2234578988 44 4444444 4777787 455556663 4556778888887
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.7e-08 Score=105.75 Aligned_cols=279 Identities=14% Similarity=0.229 Sum_probs=175.6
Q ss_pred ccccccccccCcEEEEeeCCCCeEEEeCCc-------ceeecccCC------------CcEEEEEEeCC----EEEEEEC
Q 001349 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHRE-------LVHVDSSEN------------GKVLSIACFRD----KIFSGHS 831 (1094)
Q Consensus 775 ~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~-------~~~~~~~h~------------~~V~~l~fspd----~LaSgs~ 831 (1094)
++...-+.-+|.+|+||..+|.|.++.-.. ....++.|. ..|..+.|.++ .+...+.
T Consensus 27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstN 106 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTN 106 (433)
T ss_pred ceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecC
Confidence 344455666899999999999999997552 223444553 46888999874 7778889
Q ss_pred CCeEEEEecCCCccee---------------------------------EEEe-cccCCCeEEEEEecCCCEEEEEeCCC
Q 001349 832 DGTIKVWTGRGSILHL---------------------------------IQQI-REHTKAVTGLAILQSGEMLYSGSLDK 877 (1094)
Q Consensus 832 Dg~I~vWd~~t~~~~~---------------------------------~~~l-~~H~~~V~sv~fspdg~~LaSgs~Dg 877 (1094)
|.+|++|.+.....+. .+.+ .+|+--|+++.++.|+..++|+. |=
T Consensus 107 dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-dL 185 (433)
T KOG1354|consen 107 DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-DL 185 (433)
T ss_pred CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-ce
Confidence 9999999876432111 1111 35777899999999988888764 56
Q ss_pred cEEEEECCCCc--eEEEEecccC-----ccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEE
Q 001349 878 TARVWSIGNEE--IHCVQVHDIK-----DQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYC 950 (1094)
Q Consensus 878 tI~vWdi~~~~--~~~~~~~~~~-----~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~s 950 (1094)
.|.+|++.--. ...+...++. .-|++.. |+|..- +.++-
T Consensus 186 RINLWnlei~d~sFnIVDIKP~nmEeLteVITsaE-------Fhp~~c---------------------------n~f~Y 231 (433)
T KOG1354|consen 186 RINLWNLEIIDQSFNIVDIKPANMEELTEVITSAE-------FHPHHC---------------------------NVFVY 231 (433)
T ss_pred eeeeccccccCCceeEEEccccCHHHHHHHHhhhc-------cCHhHc---------------------------cEEEE
Confidence 78999876421 2222222111 1122222 333222 34666
Q ss_pred EEcCCeEEEEECCCCceeE----Eec-----cc-eeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECC-CCeEEEE
Q 001349 951 GCQDGAIQEIDLATGTFAT----IQT-----GH-RKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS-NYNMVGS 1019 (1094)
Q Consensus 951 gs~Dg~I~iwDl~~~~~~~----~~~-----~~-~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~-~~~~~~~ 1019 (1094)
.+..|+|++-|++....-. .+. .. .-+.+-...|..+.|+++|.|+.+-.. -+|++||+. ..+++.+
T Consensus 232 SSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy--ltvk~wD~nme~~pv~t 309 (433)
T KOG1354|consen 232 SSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY--LTVKLWDLNMEAKPVET 309 (433)
T ss_pred ecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc--ceeEEEeccccCCcceE
Confidence 7788999999998533210 000 00 112223357899999999999998743 489999994 4566666
Q ss_pred ec-C------------CCC---EEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEE-E-------------------ecc
Q 001349 1020 LP-T------------LSE---VRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIE-T-------------------LQT 1061 (1094)
Q Consensus 1020 ~~-~------------~~~---v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~-~-------------------l~~ 1061 (1094)
++ | ... -..++|+++ ++++|+..+.+++|+...|.... + ...
T Consensus 310 ~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~ 389 (433)
T KOG1354|consen 310 YPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSS 389 (433)
T ss_pred EeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecC
Confidence 65 2 111 245788888 99999999999999965442110 0 000
Q ss_pred cC-------------CcceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001349 1062 GT-------------SGKVQCMALDDNEEFLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1062 ~h-------------~~~I~~l~~Spdg~~L~sgs~DG~I~iW 1091 (1094)
|. ...|...+|+|..+.++.+..+ .++||
T Consensus 390 g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~aatn-nlyif 431 (433)
T KOG1354|consen 390 GKRKRDEISVDALDFRKKILHTAWHPKENSIAVAATN-NLYIF 431 (433)
T ss_pred CCccccccccchhhhhhHHHhhccCCccceeeeeecC-ceEEe
Confidence 11 1135567899988888877655 46665
|
|
| >PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.3e-10 Score=84.97 Aligned_cols=38 Identities=32% Similarity=0.835 Sum_probs=33.5
Q ss_pred ccCccccccCc-EEcCCcccccHHhHHHHHHhCCCCCCCC
Q 001349 166 CPITTHIFDDP-VTLETGQTYERRAIQEWIERGNSSCPIT 204 (1094)
Q Consensus 166 CpIc~~~~~dP-v~~~cGhtfc~~ci~~~~~~~~~~CP~c 204 (1094)
||||.+.+.+| ++++|||+||+.||.+|++. +..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 57899999999999999998 6789987
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.2e-07 Score=108.82 Aligned_cols=231 Identities=13% Similarity=0.022 Sum_probs=140.6
Q ss_pred CCeEEEeCC-cceeecccCCCcEEEEEEeCC--EEEEEECC---CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCC
Q 001349 795 SSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSD---GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE 868 (1094)
Q Consensus 795 g~I~vWd~~-~~~~~~~~h~~~V~~l~fspd--~LaSgs~D---g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~ 868 (1094)
..|.++|.. .....+..+...+....|+|| +|+.++.+ ..|++||+.++... .+..+.+.+.++.|+|||+
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~---~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE---KVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE---EeecCCCCccceEECCCCC
Confidence 357777775 334555667778999999997 66665543 48999999988332 2334556677899999998
Q ss_pred EEE-EEeCCC--cEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC
Q 001349 869 MLY-SGSLDK--TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ 945 (1094)
Q Consensus 869 ~La-Sgs~Dg--tI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~ 945 (1094)
.|+ +.+.++ .|++||+.++....+.. +....... .|+|||+.++.....+
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~--~~~~~~~~-------~~s~dg~~l~~~s~~~------------------ 299 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTN--GPGIDTEP-------SWSPDGKSIAFTSDRG------------------ 299 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEECCC--CCCCCCCE-------EECCCCCEEEEEECCC------------------
Confidence 776 444444 58889998875433322 12222222 3888888654332111
Q ss_pred CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC--CEEEEEECCCCeEEEEecCC
Q 001349 946 GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG--AAVKMWSTSNYNMVGSLPTL 1023 (1094)
Q Consensus 946 ~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg--~~I~iwd~~~~~~~~~~~~~ 1023 (1094)
....|.+||+.++.... +..+...+....|+|++.+++.++.++ ..|.+||+.++.. ..+...
T Consensus 300 -------g~~~iy~~d~~~~~~~~-------l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~ 364 (417)
T TIGR02800 300 -------GSPQIYMMDADGGEVRR-------LTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT 364 (417)
T ss_pred -------CCceEEEEECCCCCEEE-------eecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC
Confidence 11257778887766432 222334567788999998888877653 2688899887544 333323
Q ss_pred CCEEEEEEeCC--EEEEEEcCC---eEEEEECCCCcEEEEecccCCcceEEEEE
Q 001349 1024 SEVRAMVVSSE--LVYLGCKGG---TVEIWDQKRQIRIETLQTGTSGKVQCMAL 1072 (1094)
Q Consensus 1024 ~~v~~l~~spd--~l~sgs~dg---~I~vwd~~t~~~~~~l~~~h~~~I~~l~~ 1072 (1094)
.......|+|| .++.++.++ .+++.+.. +.....+. .+.+.+...+|
T Consensus 365 ~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~-~~~g~~~~~~w 416 (417)
T TIGR02800 365 GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLP-LGNGDVREPAW 416 (417)
T ss_pred CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECC-CCCCCcCCCCC
Confidence 33455678888 555555443 45555543 44445553 23445555555
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.8e-09 Score=131.66 Aligned_cols=245 Identities=11% Similarity=0.111 Sum_probs=165.2
Q ss_pred EEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEec-ccCCCeEEEEEe
Q 001349 788 VLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIR-EHTKAVTGLAIL 864 (1094)
Q Consensus 788 l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~-~H~~~V~sv~fs 864 (1094)
+.....++...-|..+........|-..|.++.-+|. +.+||+.||.|++|....+ ..+..+. .....|+.+.|+
T Consensus 2183 ~~~~n~~~~~~tq~~~~~~~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~--~~v~~~rt~g~s~vtr~~f~ 2260 (2439)
T KOG1064|consen 2183 FTPSNLPWLGSTQTSRGASVMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHG--QQVVCFRTAGNSRVTRSRFN 2260 (2439)
T ss_pred CCcccCCccccceecccceeEeecccCceeeecCCCCCceEEecCCCceEEEEeccCC--CeEEEeeccCcchhhhhhhc
Confidence 3333344444455554333444555677888888884 9999999999999998877 3333332 223889999999
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEe
Q 001349 865 QSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV 944 (1094)
Q Consensus 865 pdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s 944 (1094)
.+|+.+..+..||.+.+|.+... ..+....|......+. |..
T Consensus 2261 ~qGnk~~i~d~dg~l~l~q~~pk--~~~s~qchnk~~~Df~-------Fi~----------------------------- 2302 (2439)
T KOG1064|consen 2261 HQGNKFGIVDGDGDLSLWQASPK--PYTSWQCHNKALSDFR-------FIG----------------------------- 2302 (2439)
T ss_pred ccCCceeeeccCCceeecccCCc--ceeccccCCcccccee-------eee-----------------------------
Confidence 99999999999999999998842 1122222222222222 221
Q ss_pred CCEEEE---EEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec
Q 001349 945 QGKVYC---GCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP 1021 (1094)
Q Consensus 945 ~~~l~s---gs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~ 1021 (1094)
..+++ .+.++.+.+||.--..... ..-..|...++++++-|....+++|+.+| .|++||++..+.++++.
T Consensus 2303 -s~~~tag~s~d~~n~~lwDtl~~~~~s-----~v~~~H~~gaT~l~~~P~~qllisggr~G-~v~l~D~rqrql~h~~~ 2375 (2439)
T KOG1064|consen 2303 -SLLATAGRSSDNRNVCLWDTLLPPMNS-----LVHTCHDGGATVLAYAPKHQLLISGGRKG-EVCLFDIRQRQLRHTFQ 2375 (2439)
T ss_pred -hhhhccccCCCCCcccchhcccCcccc-----eeeeecCCCceEEEEcCcceEEEecCCcC-cEEEeehHHHHHHHHhh
Confidence 11222 2457889999965332221 11267899999999999999999999997 99999999877766665
Q ss_pred CCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCc----ce--EEEEEcCCCCEEEEEeCCCc
Q 001349 1022 TLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSG----KV--QCMALDDNEEFLVIGTSDGR 1087 (1094)
Q Consensus 1022 ~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~----~I--~~l~~Spdg~~L~sgs~DG~ 1087 (1094)
. +. ..+++++|+..|.|+||++.....++++...|.. .. ..+-.. .++.|.+++.||+
T Consensus 2376 ~------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~-~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2376 A------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVG-QCNRIFSCGADGT 2439 (2439)
T ss_pred h------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeeec-cCceEEEecCCCC
Confidence 3 22 3448999999999999999998888887654421 11 112122 2356777777774
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.9e-07 Score=108.48 Aligned_cols=233 Identities=12% Similarity=0.007 Sum_probs=140.8
Q ss_pred CeEEEeCC-cceeecccCCCcEEEEEEeCC--EEEEEECC---CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCE
Q 001349 796 SADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSD---GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEM 869 (1094)
Q Consensus 796 ~I~vWd~~-~~~~~~~~h~~~V~~l~fspd--~LaSgs~D---g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~ 869 (1094)
.|.++|.+ .....+..+...+....|+|| .|+..+.+ ..|.+||+.++..+.+. ...+.+....|+|||+.
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~---~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT---NFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc---CCCCCcCCeEECCCCCE
Confidence 36667776 233455567788999999997 66555433 46999999988433333 33344557899999998
Q ss_pred EE-EEeCCC--cEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCC
Q 001349 870 LY-SGSLDK--TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQG 946 (1094)
Q Consensus 870 La-Sgs~Dg--tI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~ 946 (1094)
|+ +.+.+| .|.+||+.++....+.. ....... ..|+|||+.++.....+
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~--~~~~~~~-------~~~spDg~~i~f~s~~~------------------- 308 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSRVTN--HPAIDTE-------PFWGKDGRTLYFTSDRG------------------- 308 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEEccc--CCCCcCC-------eEECCCCCEEEEEECCC-------------------
Confidence 87 455555 58888999876443322 1222222 23899998754332110
Q ss_pred EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCC--EEEEEECCCCeEEEEecCCC
Q 001349 947 KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGA--AVKMWSTSNYNMVGSLPTLS 1024 (1094)
Q Consensus 947 ~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~--~I~iwd~~~~~~~~~~~~~~ 1024 (1094)
.+..|.++|+.+++..... ..+ .......|+|++.+++..+.+++ .|.+||+.++.. ..+....
T Consensus 309 ------g~~~iy~~d~~~g~~~~lt-----~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~~ 374 (430)
T PRK00178 309 ------GKPQIYKVNVNGGRAERVT-----FVG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTDTS 374 (430)
T ss_pred ------CCceEEEEECCCCCEEEee-----cCC--CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccCCC
Confidence 1235777788777653221 111 22335678999988887765432 588899988764 3333322
Q ss_pred CEEEEEEeCC--EEEEEE-cC--CeEEEEECCCCcEEEEecccCCcceEEEEEcCC
Q 001349 1025 EVRAMVVSSE--LVYLGC-KG--GTVEIWDQKRQIRIETLQTGTSGKVQCMALDDN 1075 (1094)
Q Consensus 1025 ~v~~l~~spd--~l~sgs-~d--g~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spd 1075 (1094)
......|+|| .++..+ .+ ..|++++... .....+. .+.+.+...+|+|-
T Consensus 375 ~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~-~~~g~~~~p~ws~~ 428 (430)
T PRK00178 375 LDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLP-TAQGEVREPSWSPY 428 (430)
T ss_pred CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECc-CCCCCcCCCccCCC
Confidence 3335689998 444433 33 3577777754 3344453 34556778888863
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.2e-08 Score=112.09 Aligned_cols=183 Identities=16% Similarity=0.192 Sum_probs=122.9
Q ss_pred cCcEEEEeeCCCCeEEEeCCc--cee----ecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEeccc
Q 001349 784 EMVKVLSNGHDSSADFWNHRE--LVH----VDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREH 854 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~~--~~~----~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H 854 (1094)
.+--++.|-..|.|.+.|... ... ...-....|+|+.|-|. .++.+..+|.++++|..-.
T Consensus 184 ~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~----------- 252 (636)
T KOG2394|consen 184 KGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV----------- 252 (636)
T ss_pred CCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc-----------
Confidence 345566777778887776542 111 01112478999999873 8888889999999987321
Q ss_pred CCCeEEEEE--ecCCCEEEEEeC-----CCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCC
Q 001349 855 TKAVTGLAI--LQSGEMLYSGSL-----DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNG 927 (1094)
Q Consensus 855 ~~~V~sv~f--spdg~~LaSgs~-----DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g 927 (1094)
...+.-.| .+++..+..... +.-+.-|.+-. ..|...+ |+|||++
T Consensus 253 -~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~------------g~in~f~-------FS~DG~~-------- 304 (636)
T KOG2394|consen 253 -CGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGE------------GSINEFA-------FSPDGKY-------- 304 (636)
T ss_pred -ccCCCCcccccCCCCeeEEeeeeccccCCccceeEecc------------cccccee-------EcCCCce--------
Confidence 11111111 234444433211 11222232222 2344443 8888885
Q ss_pred eEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEE
Q 001349 928 KTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVK 1007 (1094)
Q Consensus 928 ~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~ 1007 (1094)
+++.+.||.++|||..+.+.+. .+...-+...|++|+||+.|+++|+.|+ .|.
T Consensus 305 --------------------LA~VSqDGfLRvF~fdt~eLlg------~mkSYFGGLLCvcWSPDGKyIvtGGEDD-LVt 357 (636)
T KOG2394|consen 305 --------------------LATVSQDGFLRIFDFDTQELLG------VMKSYFGGLLCVCWSPDGKYIVTGGEDD-LVT 357 (636)
T ss_pred --------------------EEEEecCceEEEeeccHHHHHH------HHHhhccceEEEEEcCCccEEEecCCcc-eEE
Confidence 7888999999999998877652 3333446789999999999999999998 999
Q ss_pred EEECCCCeEEEEec-CCCCEEEEEEe
Q 001349 1008 MWSTSNYNMVGSLP-TLSEVRAMVVS 1032 (1094)
Q Consensus 1008 iwd~~~~~~~~~~~-~~~~v~~l~~s 1032 (1094)
||.+...+.+..-. |.++|..++|+
T Consensus 358 VwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 358 VWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEEeccceEEEeccccccceeeEeec
Confidence 99999998887766 78999999998
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.5e-08 Score=121.81 Aligned_cols=199 Identities=17% Similarity=0.206 Sum_probs=145.5
Q ss_pred HHHHhhhccccccccccCcEEEEeeCCCCeEEEeCCcce-eecccCCCcE--EE---EEEeCC--EEEEEECCCeEEEEe
Q 001349 768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELV-HVDSSENGKV--LS---IACFRD--KIFSGHSDGTIKVWT 839 (1094)
Q Consensus 768 ~~~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~~-~~~~~h~~~V--~~---l~fspd--~LaSgs~Dg~I~vWd 839 (1094)
.+..+...+.-..+..+..+++.+..++.+-+||..... .....+.... .+ +-++++ ++++|+.-|.|.+|+
T Consensus 82 ~~~~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~ 161 (967)
T KOG0974|consen 82 IIERFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWK 161 (967)
T ss_pred hhhhccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEe
Confidence 334444444446677788899999999999999988322 2222233222 11 223444 999999999999999
Q ss_pred cCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCe
Q 001349 840 GRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAG 919 (1094)
Q Consensus 840 ~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~ 919 (1094)
..... ... .+.+|.+.|.++.|+.||.+++|.|+|.++|+|++++++....
T Consensus 162 ~~~dn-~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~--------------------------- 212 (967)
T KOG0974|consen 162 PHEDN-KPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGC--------------------------- 212 (967)
T ss_pred ccccC-Ccc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCc---------------------------
Confidence 87432 233 6789999999999999999999999999999999999642111
Q ss_pred EEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCC-CCeEEEEEeCCccEEEE
Q 001349 920 IKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKA-NPVHALQVHNGLVYTAS 998 (1094)
Q Consensus 920 l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~-~~V~sl~fs~~~~~las 998 (1094)
..|.|+..+..+.+.++.+++++.|-+.++|+.. +.... .+.+|. ..|..++.+++....++
T Consensus 213 ----------~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~~-~~~l~------~y~~h~g~~iw~~~~~~~~~~~vT 275 (967)
T KOG0974|consen 213 ----------TGFGHSARVWACCFLPNRIITVGEDCTCRVWGVN-GTQLE------VYDEHSGKGIWKIAVPIGVIIKVT 275 (967)
T ss_pred ----------ccccccceeEEEEeccceeEEeccceEEEEEecc-cceeh------hhhhhhhcceeEEEEcCCceEEEe
Confidence 1244555666677777789999999999999654 44332 344443 56899999999999999
Q ss_pred EECCCCEEEEEECCC
Q 001349 999 TSLDGAAVKMWSTSN 1013 (1094)
Q Consensus 999 ~s~Dg~~I~iwd~~~ 1013 (1094)
++.|+ .+++||+..
T Consensus 276 ~g~Ds-~lk~~~l~~ 289 (967)
T KOG0974|consen 276 GGNDS-TLKLWDLNG 289 (967)
T ss_pred eccCc-chhhhhhhc
Confidence 99987 999999753
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.3e-08 Score=111.60 Aligned_cols=239 Identities=13% Similarity=0.109 Sum_probs=165.6
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCC-----------------cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEE
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHR-----------------ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVW 838 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~-----------------~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vW 838 (1094)
+..+.....++++||.||.++|-.+. ...+++.||++.|.-+.|+.+ .|-|+..+|.|.||
T Consensus 19 c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVW 98 (1189)
T KOG2041|consen 19 CAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVW 98 (1189)
T ss_pred EEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEE
Confidence 45566678899999999999998654 123668899999999999985 89999999999999
Q ss_pred ecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCcc-ceeeeecCceEEEeeCC
Q 001349 839 TGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQ-IQNLAVSNSILCFIPQG 917 (1094)
Q Consensus 839 d~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~-V~~v~~~~~~~~fspdg 917 (1094)
-+-.+.|-.-..-....+.|.+++|+.||..+...-.||.|.|=.++.+. +...+.++. ... +.|++|.
T Consensus 99 mlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR---IwgKeLkg~~l~h-------v~ws~D~ 168 (1189)
T KOG2041|consen 99 MLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR---IWGKELKGQLLAH-------VLWSEDL 168 (1189)
T ss_pred eeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce---ecchhcchheccc-------eeecccH
Confidence 98877543333334456779999999999999999999999887777642 222221111 122 2388888
Q ss_pred CeEEEEEeCCeEEEEcCCC-----------------------CceEEEEeC----------CEEEEEEcCCeEEEEECCC
Q 001349 918 AGIKVHLRNGKTKLLNSSK-----------------------YPKCLALVQ----------GKVYCGCQDGAIQEIDLAT 964 (1094)
Q Consensus 918 ~~l~~~~~~g~i~l~~~~~-----------------------~v~~l~~s~----------~~l~sgs~Dg~I~iwDl~~ 964 (1094)
+.+.....+|...+++..+ .+..+.+.. ..++++..+|.+++..-.+
T Consensus 169 ~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eN 248 (1189)
T KOG2041|consen 169 EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEN 248 (1189)
T ss_pred HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcC
Confidence 8777777778887777422 133344431 2488888888888875444
Q ss_pred CceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC--------CEEEEEECCCCeEEEEec-CCCCEEEEEEeCC
Q 001349 965 GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG--------AAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE 1034 (1094)
Q Consensus 965 ~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg--------~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd 1034 (1094)
......+ ...-.+....|+++|.+++.++.+. +.|.+|.. -|..+.+++ .+..|++++|-+.
T Consensus 249 D~~Pvv~-------dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~ 319 (1189)
T KOG2041|consen 249 DPEPVVV-------DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGT 319 (1189)
T ss_pred CCCCeEE-------ecccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCC
Confidence 3322211 1224677889999999998887542 24555543 466667776 4667888887654
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.1e-09 Score=131.32 Aligned_cols=208 Identities=21% Similarity=0.259 Sum_probs=153.0
Q ss_pred EECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecC
Q 001349 829 GHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSN 908 (1094)
Q Consensus 829 gs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~ 908 (1094)
...+++..-|..+.+. ..++.|-..|.++.-+|...+-+||+.||.|++|....++..+.........|..+.
T Consensus 2186 ~n~~~~~~tq~~~~~~----~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~--- 2258 (2439)
T KOG1064|consen 2186 SNLPWLGSTQTSRGAS----VMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSR--- 2258 (2439)
T ss_pred ccCCccccceecccce----eEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhh---
Confidence 3345555556655441 123345567888888998889999999999999999887633332222235555554
Q ss_pred ceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEE
Q 001349 909 SILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQ 988 (1094)
Q Consensus 909 ~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~ 988 (1094)
|+.+|+ ++..+..||.+.+|.+. .+.. .....|....+.+.
T Consensus 2259 ----f~~qGn----------------------------k~~i~d~dg~l~l~q~~-pk~~------~s~qchnk~~~Df~ 2299 (2439)
T KOG1064|consen 2259 ----FNHQGN----------------------------KFGIVDGDGDLSLWQAS-PKPY------TSWQCHNKALSDFR 2299 (2439)
T ss_pred ----hcccCC----------------------------ceeeeccCCceeecccC-Ccce------eccccCCcccccee
Confidence 655555 46667788889999876 2222 34567888889999
Q ss_pred EeCCccEEEEEECCCCEEEEEECCCC---eEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccC
Q 001349 989 VHNGLVYTASTSLDGAAVKMWSTSNY---NMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGT 1063 (1094)
Q Consensus 989 fs~~~~~las~s~Dg~~I~iwd~~~~---~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h 1063 (1094)
|-......+.-+.|++.+.+||.--. .++. ..|.+.++++++-|. .+++|+.+|.|++||++..+..++++.
T Consensus 2300 Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-- 2376 (2439)
T KOG1064|consen 2300 FIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-- 2376 (2439)
T ss_pred eeehhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--
Confidence 97766666667788899999997532 2333 348899999999998 899999999999999998888877752
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1064 SGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1064 ~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
+. ...++++|+..|.|+||+++
T Consensus 2377 --------~~-~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2377 --------LD-TREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred --------hh-hhheeeccCcccceEEEEcc
Confidence 44 56799999999999999974
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.5e-08 Score=100.10 Aligned_cols=156 Identities=12% Similarity=0.232 Sum_probs=103.4
Q ss_pred EEEEEecCCCEEEEEeC---C-------CcEEEEECCC--CceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeC
Q 001349 859 TGLAILQSGEMLYSGSL---D-------KTARVWSIGN--EEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRN 926 (1094)
Q Consensus 859 ~sv~fspdg~~LaSgs~---D-------gtI~vWdi~~--~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~ 926 (1094)
..+.|+|+|++|+.-.. | |...+|.++. .....+.. ...++|.+++ |+|+|+.++
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l-~~~~~I~~~~-------WsP~g~~fa----- 75 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL-KKEGPIHDVA-------WSPNGNEFA----- 75 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec-cCCCceEEEE-------ECcCCCEEE-----
Confidence 35778888887664433 1 2234444422 21112211 2233566666 777777543
Q ss_pred CeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC--C
Q 001349 927 GKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG--A 1004 (1094)
Q Consensus 927 g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg--~ 1004 (1094)
++.|..++.|.+||++ ++.+. .+ +...++.+.|+|+|.+++.++.++ +
T Consensus 76 ---------------------vi~g~~~~~v~lyd~~-~~~i~------~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G 125 (194)
T PF08662_consen 76 ---------------------VIYGSMPAKVTLYDVK-GKKIF------SF--GTQPRNTISWSPDGRFLVLAGFGNLNG 125 (194)
T ss_pred ---------------------EEEccCCcccEEEcCc-ccEeE------ee--cCCCceEEEECCCCCEEEEEEccCCCc
Confidence 3445567899999996 44432 22 235778999999999999987542 3
Q ss_pred EEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEc------CCeEEEEECCCCcEEEEe
Q 001349 1005 AVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCK------GGTVEIWDQKRQIRIETL 1059 (1094)
Q Consensus 1005 ~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~------dg~I~vwd~~t~~~~~~l 1059 (1094)
.|.+||+++.+.+.+..+.. ++.++|+|| ++++++. |+.++||+.. |+.+...
T Consensus 126 ~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 126 DLEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEEEEECCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 79999999999988877654 789999999 6666653 7889999985 6665554
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.90 E-value=3e-06 Score=95.71 Aligned_cols=251 Identities=9% Similarity=0.087 Sum_probs=150.1
Q ss_pred CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeC----------CCcEEEEECCCCceEEEEecccCccce
Q 001349 833 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSL----------DKTARVWSIGNEEIHCVQVHDIKDQIQ 902 (1094)
Q Consensus 833 g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~----------DgtI~vWdi~~~~~~~~~~~~~~~~V~ 902 (1094)
|+|.|.|..++ +.+.++..-..+- .+ +||||+.++++.. +..|.+||..+.+.......+ ..+-.
T Consensus 27 ~~v~ViD~~~~--~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p-~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAG--RVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP-EGPRF 101 (352)
T ss_pred ceEEEEECCCC--EEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccC-CCchh
Confidence 89999999998 6777776433332 34 9999998887765 789999999998632212111 11111
Q ss_pred eeeecCceEEEeeCCCeEEEEEeC--CeEEEEcCCCC--ceEEEEeC---------CEEEEEEcCCeEEEEECCCCceeE
Q 001349 903 NLAVSNSILCFIPQGAGIKVHLRN--GKTKLLNSSKY--PKCLALVQ---------GKVYCGCQDGAIQEIDLATGTFAT 969 (1094)
Q Consensus 903 ~v~~~~~~~~fspdg~~l~~~~~~--g~i~l~~~~~~--v~~l~~s~---------~~l~sgs~Dg~I~iwDl~~~~~~~ 969 (1094)
.+...+....++|||+++.+...+ ..+.++|.... +..+...+ ....+-|.||......+.+.....
T Consensus 102 ~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~ 181 (352)
T TIGR02658 102 LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPK 181 (352)
T ss_pred hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceE
Confidence 112223355699999999987754 67778876432 22233322 223334566665554443322111
Q ss_pred EeccceeecCCCCCeEEE-EEeC-CccEEEEEECCCCEEEEEECCC-----CeEEEEec--------CCCCEEEEEEeCC
Q 001349 970 IQTGHRKLLGKANPVHAL-QVHN-GLVYTASTSLDGAAVKMWSTSN-----YNMVGSLP--------TLSEVRAMVVSSE 1034 (1094)
Q Consensus 970 ~~~~~~~~~~h~~~V~sl-~fs~-~~~~las~s~Dg~~I~iwd~~~-----~~~~~~~~--------~~~~v~~l~~spd 1034 (1094)
. .....+.+...++..= .|.+ ++.++..... | +|.+.|+.. ......+. ....+.-++++++
T Consensus 182 ~-~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G-~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~d 258 (352)
T TIGR02658 182 I-KPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-G-KIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRA 258 (352)
T ss_pred E-eeeeeecCCccccccCCceEcCCCcEEEEecC-C-eEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCC
Confidence 1 1001111100111000 2343 5555544433 5 999999643 22333222 1233445999987
Q ss_pred --EEEEEE----------cCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCC-EEEEEe-CCCcEEEEeC
Q 001349 1035 --LVYLGC----------KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE-FLVIGT-SDGRIQAWGL 1093 (1094)
Q Consensus 1035 --~l~sgs----------~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~-~L~sgs-~DG~I~iWdl 1093 (1094)
.+++.. ..+.|.++|..+++.+..+..++ .+..++++||++ +|++.+ .++.|.+.|.
T Consensus 259 g~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~--~~~~iavS~Dgkp~lyvtn~~s~~VsViD~ 329 (352)
T TIGR02658 259 RDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH--EIDSINVSQDAKPLLYALSTGDKTLYIFDA 329 (352)
T ss_pred CCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC--ceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence 555532 22589999999999999997554 799999999999 887666 5788999986
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.4e-08 Score=110.93 Aligned_cols=205 Identities=12% Similarity=0.138 Sum_probs=142.3
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCceEEEEecc--cCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEE
Q 001349 865 QSGEMLYSGSLDKTARVWSIGNEEIHCVQVHD--IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLA 942 (1094)
Q Consensus 865 pdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~--~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~ 942 (1094)
|.+.++|..+.||.+|+||+..++++.-.... ..+...+.. |. +.. .+.. .-|.........+
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~-------w~-----L~~--~~s~-~k~~~~~~~~~~s 67 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTK-------WG-----LSA--DYSP-MKWLSLEKAKKAS 67 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEE-------EE-----EEe--ccch-HHHHhHHHHhhcc
Confidence 45679999999999999999998643322211 111111111 10 000 0000 0000000111111
Q ss_pred EeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-
Q 001349 943 LVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP- 1021 (1094)
Q Consensus 943 ~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~- 1021 (1094)
.....++-|...|.|.+|+...|+....+. -.+|.+.|+++.++.+-..+.+++.|. .+..|+......++.+.
T Consensus 68 ~~t~~lvlgt~~g~v~~ys~~~g~it~~~s----t~~h~~~v~~~~~~~~~~ciyS~~ad~-~v~~~~~~~~~~~~~~~~ 142 (541)
T KOG4547|consen 68 LDTSMLVLGTPQGSVLLYSVAGGEITAKLS----TDKHYGNVNEILDAQRLGCIYSVGADL-KVVYILEKEKVIIRIWKE 142 (541)
T ss_pred CCceEEEeecCCccEEEEEecCCeEEEEEe----cCCCCCcceeeecccccCceEecCCce-eEEEEecccceeeeeecc
Confidence 112358889999999999999998775432 246899999999998888888888886 99999999999998888
Q ss_pred CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCC-----CCEEEEE-eCCCcEEEEe
Q 001349 1022 TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDN-----EEFLVIG-TSDGRIQAWG 1092 (1094)
Q Consensus 1022 ~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spd-----g~~L~sg-s~DG~I~iWd 1092 (1094)
....+.+++++|| .+++| .+.|++||+++++.+.+| .||.++|+++.|-.+ |+++.++ ..+.-+.+|-
T Consensus 143 ~~~~~~sl~is~D~~~l~~a--s~~ik~~~~~~kevv~~f-tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~ 218 (541)
T KOG4547|consen 143 QKPLVSSLCISPDGKILLTA--SRQIKVLDIETKEVVITF-TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV 218 (541)
T ss_pred CCCccceEEEcCCCCEEEec--cceEEEEEccCceEEEEe-cCCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence 5677999999999 55555 478999999999999999 699999999999877 6666654 3444566774
|
|
| >PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.6e-10 Score=90.13 Aligned_cols=58 Identities=21% Similarity=0.378 Sum_probs=34.1
Q ss_pred ceeccCccccccCcEE-cCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHH
Q 001349 163 DFVCPITTHIFDDPVT-LETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLI 224 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~-~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i 224 (1094)
-+.|++|.++|++||. ..|.|.||+.||...+.. .||+|+.+....++. -|+.|.++|
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~-~NrqLd~~i 65 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQ-INRQLDSMI 65 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS-----HHHHHHH
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHH-hhhhhhccC
Confidence 5789999999999997 599999999999886643 499999999999996 899999886
|
|
| >COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.7e-10 Score=113.48 Aligned_cols=69 Identities=16% Similarity=0.269 Sum_probs=61.4
Q ss_pred CCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHh
Q 001349 160 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQ 230 (1094)
Q Consensus 160 ~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~ 230 (1094)
++.-+.|-||.+.|+-|+.++||||||..||.+|+.. +..||.|+.......+. .|..++.+++.+...
T Consensus 22 LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr-~~s~~~ei~es~~~~ 90 (391)
T COG5432 22 LDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLR-GSSGSREINESHARN 90 (391)
T ss_pred chhHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcc-cchhHHHHHHhhhhc
Confidence 3446899999999999999999999999999999987 66899999999888886 899999999988753
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.5e-07 Score=96.90 Aligned_cols=256 Identities=15% Similarity=0.179 Sum_probs=162.8
Q ss_pred CCCeEEEeCCc-----ceeecccCCCcEEEEEEeC-----C-EEEEEECCCeEEEEecCCCcceeEEEecccC---C---
Q 001349 794 DSSADFWNHRE-----LVHVDSSENGKVLSIACFR-----D-KIFSGHSDGTIKVWTGRGSILHLIQQIREHT---K--- 856 (1094)
Q Consensus 794 dg~I~vWd~~~-----~~~~~~~h~~~V~~l~fsp-----d-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~---~--- 856 (1094)
.|.+.+|++.. ........+..+..+.|.. + .++-+..+|.|.++..... .....+.+-. -
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~--~ss~~L~~ls~~ki~~~ 122 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDED--ESSVHLRGLSSKKISVV 122 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccc--eeeeeecccchhhhhhe
Confidence 35667777652 1122233456677777763 3 6777888899999976544 2222332211 1
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEe-cccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC
Q 001349 857 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQV-HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS 935 (1094)
Q Consensus 857 ~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~-~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~ 935 (1094)
...++.|++.|..++++-.+|.+.+-+.....++..+. ..|.-..+... |+..
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~-------f~~~------------------- 176 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAK-------FSDK------------------- 176 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeee-------cccC-------------------
Confidence 24578899988889999888988855544432221111 11222222211 1111
Q ss_pred CCceEEEEeCCEEEEEEcCCeEEEEECCC-CceeEEeccceeecCCCCCeEEEEEe-CCccEEEEEECCCCEEEEEECC-
Q 001349 936 KYPKCLALVQGKVYCGCQDGAIQEIDLAT-GTFATIQTGHRKLLGKANPVHALQVH-NGLVYTASTSLDGAAVKMWSTS- 1012 (1094)
Q Consensus 936 ~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~-~~~~~~~~~~~~~~~h~~~V~sl~fs-~~~~~las~s~Dg~~I~iwd~~- 1012 (1094)
.|+.+++|+.|+.+..||++. ++.+. .....|...|.++.-+ |...++++|+.|+ .|++||++
T Consensus 177 --------~pnlvytGgDD~~l~~~D~R~p~~~i~-----~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe-~i~~~DtRn 242 (339)
T KOG0280|consen 177 --------EPNLVYTGGDDGSLSCWDIRIPKTFIW-----HNSKVHTSGVVSIYSSPPKPTYIATGSYDE-CIRVLDTRN 242 (339)
T ss_pred --------CCceEEecCCCceEEEEEecCCcceee-----ecceeeecceEEEecCCCCCceEEEecccc-ceeeeehhc
Confidence 245689999999999999993 33332 2234577889999887 5688999999997 99999999
Q ss_pred CCeEEEEecCCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCc----EEEEecccCCcceEEEEEcCCCCEEEEEe-C
Q 001349 1013 NYNMVGSLPTLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQI----RIETLQTGTSGKVQCMALDDNEEFLVIGT-S 1084 (1094)
Q Consensus 1013 ~~~~~~~~~~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~----~~~~l~~~h~~~I~~l~~Spdg~~L~sgs-~ 1084 (1094)
.++++..-...+.|+.+..+|. .++.++.-+-.+|-+...+. ........|.+-+..-.|......|+|++ .
T Consensus 243 m~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFY 322 (339)
T KOG0280|consen 243 MGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFY 322 (339)
T ss_pred ccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeecc
Confidence 4777777777799999999997 23444444446677665432 12333356777777777855556788865 4
Q ss_pred CCcEE-EE
Q 001349 1085 DGRIQ-AW 1091 (1094)
Q Consensus 1085 DG~I~-iW 1091 (1094)
|+.++ +|
T Consensus 323 Dk~~~~~W 330 (339)
T KOG0280|consen 323 DKKIRQLW 330 (339)
T ss_pred ccceeeee
Confidence 77755 77
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-05 Score=90.56 Aligned_cols=256 Identities=12% Similarity=0.085 Sum_probs=157.0
Q ss_pred CCeEEEeCCc--ceeecc-cCCCcEEEEEEeCC--EEE-EEE---------CCCeEEEEecCCCcceeEEEeccc-----
Q 001349 795 SSADFWNHRE--LVHVDS-SENGKVLSIACFRD--KIF-SGH---------SDGTIKVWTGRGSILHLIQQIREH----- 854 (1094)
Q Consensus 795 g~I~vWd~~~--~~~~~~-~h~~~V~~l~fspd--~La-Sgs---------~Dg~I~vWd~~t~~~~~~~~l~~H----- 854 (1094)
++|.+.|..+ .+.... +.... .+ ++|| .++ +.+ .+..|.+||..+. +.+..+.--
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~--~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH--LPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC--cEEeEEccCCCchh
Confidence 8899999873 222222 22222 24 8887 444 444 5899999999999 677666531
Q ss_pred --CCCeEEEEEecCCCEEEEEe-C-CCcEEEEECCCCceEEEEecccCccceeeeec-CceEEEeeCCCeEEEEEeC-Ce
Q 001349 855 --TKAVTGLAILQSGEMLYSGS-L-DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVS-NSILCFIPQGAGIKVHLRN-GK 928 (1094)
Q Consensus 855 --~~~V~sv~fspdg~~LaSgs-~-DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~-~~~~~fspdg~~l~~~~~~-g~ 928 (1094)
...-..++++|||++++... . +..|-+.|+.+++.. ......+...-...+ ......+.||..+.+...+ |.
T Consensus 102 ~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv--~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~ 179 (352)
T TIGR02658 102 LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFV--RMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGN 179 (352)
T ss_pred hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEE--EEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCc
Confidence 22345789999999999776 3 689999999998632 222222211111111 1233456777766544332 32
Q ss_pred E-----EEEcC------CCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeE-----Eecccee-ecCCCCCeEEEEEeC
Q 001349 929 T-----KLLNS------SKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFAT-----IQTGHRK-LLGKANPVHALQVHN 991 (1094)
Q Consensus 929 i-----~l~~~------~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~-----~~~~~~~-~~~h~~~V~sl~fs~ 991 (1094)
. .+++. ... .+...++..+-.+..|+|.+.|+....... .+..... -.-....+.-+++++
T Consensus 180 ~~~~~~~vf~~~~~~v~~rP--~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~ 257 (352)
T TIGR02658 180 PKIKPTEVFHPEDEYLINHP--AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR 257 (352)
T ss_pred eEEeeeeeecCCccccccCC--ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC
Confidence 2 23322 111 111213554444455999999965443221 1110000 000223344589998
Q ss_pred CccEEEEEEC---------CCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC---EEEEEE-cCCeEEEEECCCCcEEEE
Q 001349 992 GLVYTASTSL---------DGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE---LVYLGC-KGGTVEIWDQKRQIRIET 1058 (1094)
Q Consensus 992 ~~~~las~s~---------Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd---~l~sgs-~dg~I~vwd~~t~~~~~~ 1058 (1094)
++..+..... .++.|.++|..+++.+..+..+..+..+++++| .+++.. .++.|.|+|..+++.+.+
T Consensus 258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 258 ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSS 337 (352)
T ss_pred CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEee
Confidence 8766665321 124899999999999999998889999999998 556555 578999999999999998
Q ss_pred e
Q 001349 1059 L 1059 (1094)
Q Consensus 1059 l 1059 (1094)
+
T Consensus 338 i 338 (352)
T TIGR02658 338 V 338 (352)
T ss_pred e
Confidence 8
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.2e-06 Score=98.40 Aligned_cols=291 Identities=14% Similarity=0.145 Sum_probs=168.0
Q ss_pred cCcEEEEeeCCCCeEEEeCCcceeeccc--CC----------CcE-EEEEEeCCEEEEEECCCeEEEEecCCCcceeEEE
Q 001349 784 EMVKVLSNGHDSSADFWNHRELVHVDSS--EN----------GKV-LSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQ 850 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~~~~~~~~~--h~----------~~V-~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~ 850 (1094)
.+.+++.++.+|.+.-+|..+....... .. ..+ ..+....+.++.++.+|.+..+|..+| +.+..
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG--~~~W~ 145 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDG--EVAWQ 145 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCC--CCccc
Confidence 4567777777788777776532211111 00 011 123455578888999999999999999 56665
Q ss_pred ecccCCCeEE-EEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCcc----ceeeeecCceEEE-eeCCCeEEEEE
Q 001349 851 IREHTKAVTG-LAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQ----IQNLAVSNSILCF-IPQGAGIKVHL 924 (1094)
Q Consensus 851 l~~H~~~V~s-v~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~----V~~v~~~~~~~~f-spdg~~l~~~~ 924 (1094)
..... .+.+ ..+ .+..++.++.+|.+.-+|..+|+..-......... ..+-......+.+ ..+|...+...
T Consensus 146 ~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 146 TKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEc
Confidence 54332 2221 112 24567778889999999999987332222111000 0000001111112 12222222222
Q ss_pred eCCeEEEEcCC--C------------CceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEe
Q 001349 925 RNGKTKLLNSS--K------------YPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVH 990 (1094)
Q Consensus 925 ~~g~i~l~~~~--~------------~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs 990 (1094)
.+|.. +|... . ....-.+.++.+++++.+|.+..+|..+|+.+.... + + ....+...
T Consensus 223 ~~G~~-~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~----~-~---~~~~~~~~ 293 (394)
T PRK11138 223 EQGQL-IWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE----Y-G---SVNDFAVD 293 (394)
T ss_pred cCChh-hheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec----C-C---CccCcEEE
Confidence 23322 23211 0 011222446889999999999999999998764321 1 1 11123333
Q ss_pred CCccEEEEEECCCCEEEEEECCCCeEEEEecC--CCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcceE
Q 001349 991 NGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT--LSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQ 1068 (1094)
Q Consensus 991 ~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~--~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~ 1068 (1094)
.+..|+ ++.+| .+..+|..+|+.+..... .....+..+..+.++.++.+|.|+++|..+|+.+...+.+......
T Consensus 294 ~~~vy~--~~~~g-~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s 370 (394)
T PRK11138 294 GGRIYL--VDQND-RVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLS 370 (394)
T ss_pred CCEEEE--EcCCC-eEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccee
Confidence 443333 34555 899999999987765542 2234445566778999999999999999999988877532222222
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1069 CMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1069 ~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
...+ .+..|+.++.||.|+.++.
T Consensus 371 ~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 371 EPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEE--ECCEEEEEeCCceEEEEeC
Confidence 2223 2457888999999998875
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.4e-06 Score=110.95 Aligned_cols=247 Identities=16% Similarity=0.154 Sum_probs=145.1
Q ss_pred EEEEEeC--C-EEEEEECCCeEEEEecCCCcceeEEEecc--------------cCCCeEEEEEecCCCEEEEEe-CCCc
Q 001349 817 LSIACFR--D-KIFSGHSDGTIKVWTGRGSILHLIQQIRE--------------HTKAVTGLAILQSGEMLYSGS-LDKT 878 (1094)
Q Consensus 817 ~~l~fsp--d-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~--------------H~~~V~sv~fspdg~~LaSgs-~Dgt 878 (1094)
..+++++ + ++++-+.++.|++||..+. .+..+.+ +-.....|+|+++++.|+.+. ..+.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~---~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN---FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC---EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCce
Confidence 3456654 2 6677778889999998654 2333322 112357899999888666554 4578
Q ss_pred EEEEECCCCceEEEEecccCcc--------ceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEE
Q 001349 879 ARVWSIGNEEIHCVQVHDIKDQ--------IQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYC 950 (1094)
Q Consensus 879 I~vWdi~~~~~~~~~~~~~~~~--------V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~s 950 (1094)
|+++|..++....+........ .......|..++|+|++..+ +++
T Consensus 648 Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~L---------------------------yVa 700 (1057)
T PLN02919 648 LREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKV---------------------------YIA 700 (1057)
T ss_pred EEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeE---------------------------EEE
Confidence 9999998875444332111000 00000111223344422211 334
Q ss_pred EEcCCeEEEEECCCCceeEEeccce---eecC------CCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEe-
Q 001349 951 GCQDGAIQEIDLATGTFATIQTGHR---KLLG------KANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL- 1020 (1094)
Q Consensus 951 gs~Dg~I~iwDl~~~~~~~~~~~~~---~~~~------h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~- 1020 (1094)
.+.++.|++||..++.... +.+.. ...+ .-...+.+++++++..+..+..+++.|++||+.++......
T Consensus 701 d~~~~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~g 779 (1057)
T PLN02919 701 MAGQHQIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAG 779 (1057)
T ss_pred ECCCCeEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEe
Confidence 4455667777766554321 11100 0001 11345679999988754444444469999999876532110
Q ss_pred ------------c-C--------CCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEeccc------------CCc
Q 001349 1021 ------------P-T--------LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTG------------TSG 1065 (1094)
Q Consensus 1021 ------------~-~--------~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~------------h~~ 1065 (1094)
. . .....+++++++ .+++-+.++.|++||..++........+ .-.
T Consensus 780 g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~ 859 (1057)
T PLN02919 780 GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLS 859 (1057)
T ss_pred cccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccC
Confidence 0 0 113467888887 5666677899999999887655433211 112
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1066 KVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1066 ~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
....++++++|+++++-+.+++|++||+.
T Consensus 860 ~P~GIavd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 860 EPAGLALGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred CceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 57899999999999999999999999973
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.9e-06 Score=98.14 Aligned_cols=254 Identities=15% Similarity=0.203 Sum_probs=154.1
Q ss_pred EEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccC
Q 001349 819 IACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIK 898 (1094)
Q Consensus 819 l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~ 898 (1094)
.....+.++.++.+|.|..+|..+| +.+....-.......... ++..++.++.||.+..||..+|+..-. ....
T Consensus 61 p~v~~~~v~v~~~~g~v~a~d~~tG--~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~--~~~~ 134 (377)
T TIGR03300 61 PAVAGGKVYAADADGTVVALDAETG--KRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWR--AKLS 134 (377)
T ss_pred eEEECCEEEEECCCCeEEEEEccCC--cEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeee--eccC
Confidence 3445679999999999999999999 566665433322222222 567888899999999999998863322 2222
Q ss_pred ccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC-----------CCc------eEEEEeCCEEEEEEcCCeEEEEE
Q 001349 899 DQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS-----------KYP------KCLALVQGKVYCGCQDGAIQEID 961 (1094)
Q Consensus 899 ~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~-----------~~v------~~l~~s~~~l~sgs~Dg~I~iwD 961 (1094)
..+.+.. .. .+..+.+...++.+..++.. ... .+....++.++.+..+|.+..+|
T Consensus 135 ~~~~~~p-------~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald 206 (377)
T TIGR03300 135 SEVLSPP-------LV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALD 206 (377)
T ss_pred ceeecCC-------EE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEE
Confidence 2222111 00 12233333344444444321 111 12233457788999999999999
Q ss_pred CCCCceeEEeccceeecCCC--C---Ce-EEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCCE
Q 001349 962 LATGTFATIQTGHRKLLGKA--N---PV-HALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSEL 1035 (1094)
Q Consensus 962 l~~~~~~~~~~~~~~~~~h~--~---~V-~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd~ 1035 (1094)
..+|+.......... .+.. . .+ .+..+..+ .+..++.+| .+..||..+|+.+....... .....+..+.
T Consensus 207 ~~tG~~~W~~~~~~~-~g~~~~~~~~~~~~~p~~~~~--~vy~~~~~g-~l~a~d~~tG~~~W~~~~~~-~~~p~~~~~~ 281 (377)
T TIGR03300 207 LQTGQPLWEQRVALP-KGRTELERLVDVDGDPVVDGG--QVYAVSYQG-RVAALDLRSGRVLWKRDASS-YQGPAVDDNR 281 (377)
T ss_pred ccCCCEeeeeccccC-CCCCchhhhhccCCccEEECC--EEEEEEcCC-EEEEEECCCCcEEEeeccCC-ccCceEeCCE
Confidence 999987643221100 0000 0 00 11122333 334445565 89999999998887766322 3345566778
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1036 VYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1036 l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
+++++.+|.++.+|..+|+.+............+... .+..+++++.+|.|++||.
T Consensus 282 vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 282 LYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSR 337 (377)
T ss_pred EEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEEC
Confidence 9999999999999999998876652111112222222 3678899999999999985
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.4e-06 Score=102.93 Aligned_cols=235 Identities=10% Similarity=-0.031 Sum_probs=137.4
Q ss_pred CeEEEeCC-cceeecccCCCcEEEEEEeCC--E---EEEEECCC--eEEEEecCCCcceeEEEecccCCCeEEEEEecCC
Q 001349 796 SADFWNHR-ELVHVDSSENGKVLSIACFRD--K---IFSGHSDG--TIKVWTGRGSILHLIQQIREHTKAVTGLAILQSG 867 (1094)
Q Consensus 796 ~I~vWd~~-~~~~~~~~h~~~V~~l~fspd--~---LaSgs~Dg--~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg 867 (1094)
.|.+.|.+ .....+..+...+..-.|+|| . +++...+| .|.+.++.++....+..+. +......|||||
T Consensus 166 ~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~---g~~~~p~wSPDG 242 (428)
T PRK01029 166 ELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQ---GNQLMPTFSPRK 242 (428)
T ss_pred eEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCC---CCccceEECCCC
Confidence 45555655 222334445566778899997 3 23444444 5777789888544444443 345568999999
Q ss_pred CEEEEEeC-----CCcEEEEECCCC---ceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCce
Q 001349 868 EMLYSGSL-----DKTARVWSIGNE---EIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPK 939 (1094)
Q Consensus 868 ~~LaSgs~-----DgtI~vWdi~~~---~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~ 939 (1094)
+.|+..+. |..+.+|++.++ ....+... ....... ..|+|||+.++...
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~-~~~~~~~-------p~wSPDG~~Laf~s--------------- 299 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNE-AFGTQGN-------PSFSPDGTRLVFVS--------------- 299 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecC-CCCCcCC-------eEECCCCCEEEEEE---------------
Confidence 98886653 223445776653 21211111 1111122 34999998764432
Q ss_pred EEEEeCCEEEEEEcCCe--EEEEECCC-CceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC--CEEEEEECCCC
Q 001349 940 CLALVQGKVYCGCQDGA--IQEIDLAT-GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG--AAVKMWSTSNY 1014 (1094)
Q Consensus 940 ~l~~s~~~l~sgs~Dg~--I~iwDl~~-~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg--~~I~iwd~~~~ 1014 (1094)
..+|. |.++++.. +... ..+..+...+....|+||+..++..+.++ ..|.+||+.++
T Consensus 300 ------------~~~g~~~ly~~~~~~~g~~~------~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g 361 (428)
T PRK01029 300 ------------NKDGRPRIYIMQIDPEGQSP------RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG 361 (428)
T ss_pred ------------CCCCCceEEEEECcccccce------EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 22333 33334432 1111 22223334567889999999888765442 37999999888
Q ss_pred eEEEEecCCCCEEEEEEeCC--EEE-EEEc--CCeEEEEECCCCcEEEEecccCCcceEEEEEcCCC
Q 001349 1015 NMVGSLPTLSEVRAMVVSSE--LVY-LGCK--GGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNE 1076 (1094)
Q Consensus 1015 ~~~~~~~~~~~v~~l~~spd--~l~-sgs~--dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg 1076 (1094)
+..........+....|+|| .++ ++.. .+.|++||+.+++..... ...+.+...+|+|-.
T Consensus 362 ~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt--~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 362 RDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV--IGSGEKRFPSWGAFP 426 (428)
T ss_pred CeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee--cCCCcccCceecCCC
Confidence 76543334446778899998 444 3332 357999999888754444 234557788888754
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.1e-06 Score=98.29 Aligned_cols=295 Identities=12% Similarity=0.154 Sum_probs=176.9
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCC--EEEEEECCC---------------eEEEEec
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDG---------------TIKVWTG 840 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg---------------~I~vWd~ 840 (1094)
+..+++-|.++++... ..|.+|..........-....|..+.|+|+ +|.|-+..+ .+.|||.
T Consensus 37 ~~~~SP~G~~l~~~~~-~~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~ 115 (561)
T COG5354 37 YVSESPLGTYLFSEHA-AGVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDI 115 (561)
T ss_pred heeecCcchheehhhc-cceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEec
Confidence 4556677777776544 457789877433444444567899999996 888876544 4999999
Q ss_pred CCCcceeEEEecccCCC--eE-EEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccC-ccceeeeecCc-----eE
Q 001349 841 RGSILHLIQQIREHTKA--VT-GLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIK-DQIQNLAVSNS-----IL 911 (1094)
Q Consensus 841 ~t~~~~~~~~l~~H~~~--V~-sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~-~~V~~v~~~~~-----~~ 911 (1094)
.++ ..+..+.+-..+ .| -+.|+-+.++++=... ..++|+++ ++..........+ ..+....+++. .+
T Consensus 116 ~sg--~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~-~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la 191 (561)
T COG5354 116 ASG--MIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG-SSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELA 191 (561)
T ss_pred cCc--eeEeeccccCCcccccceeeeeecchhhhhhcc-CeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEE
Confidence 999 777777766665 66 7889988877765533 35999997 4432222222212 34445553332 22
Q ss_pred EEeeCCCeEEEEEeCCeEEEEcCCC------------CceEEEEeC--CEEEE-----------EEcCCeEEEEECCCCc
Q 001349 912 CFIPQGAGIKVHLRNGKTKLLNSSK------------YPKCLALVQ--GKVYC-----------GCQDGAIQEIDLATGT 966 (1094)
Q Consensus 912 ~fspdg~~l~~~~~~g~i~l~~~~~------------~v~~l~~s~--~~l~s-----------gs~Dg~I~iwDl~~~~ 966 (1094)
.|.|.-. ...+.+.+|.... .-..+.|+. +.+.+ -.....++++++....
T Consensus 192 ~~tPEk~-----~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~ 266 (561)
T COG5354 192 YWTPEKL-----NKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS 266 (561)
T ss_pred EEccccC-----CCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc
Confidence 2222210 1123344444321 111222221 11111 0123456777776333
Q ss_pred eeEEeccceeecCCCCCeEEEEEeCCccEEEEEE-CCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcC-
Q 001349 967 FATIQTGHRKLLGKANPVHALQVHNGLVYTASTS-LDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKG- 1042 (1094)
Q Consensus 967 ~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s-~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~d- 1042 (1094)
.. ...+-.++|..++|.|.+..++..+ .....+.++|++.. ....+. ...=..+.|+|. +++.++.|
T Consensus 267 i~-------V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P-e~~rNT~~fsp~~r~il~agF~n 337 (561)
T COG5354 267 IP-------VEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP-EQKRNTIFFSPHERYILFAGFDN 337 (561)
T ss_pred cc-------eeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecC-CcccccccccCcccEEEEecCCc
Confidence 22 1124468999999988766655554 33358999999866 333333 333456778887 66665544
Q ss_pred --CeEEEEECCCCcEEE-EecccCCcceEEEEEcCCCCEEEEEeC------CCcEEEEeCC
Q 001349 1043 --GTVEIWDQKRQIRIE-TLQTGTSGKVQCMALDDNEEFLVIGTS------DGRIQAWGLS 1094 (1094)
Q Consensus 1043 --g~I~vwd~~t~~~~~-~l~~~h~~~I~~l~~Spdg~~L~sgs~------DG~I~iWdls 1094 (1094)
|.|-+||......+. .+. +. ..+-+.|+|||+++.+... |..|+|||+.
T Consensus 338 l~gni~i~~~~~rf~~~~~~~-~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 338 LQGNIEIFDPAGRFKVAGAFN-GL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred cccceEEeccCCceEEEEEee-cC--CceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence 789999987765444 552 32 3466789999999887643 7889999974
|
|
| >PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.2e-09 Score=80.82 Aligned_cols=39 Identities=38% Similarity=0.994 Sum_probs=35.8
Q ss_pred ccCccccccCcE-EcCCcccccHHhHHHHHH-hCCCCCCCC
Q 001349 166 CPITTHIFDDPV-TLETGQTYERRAIQEWIE-RGNSSCPIT 204 (1094)
Q Consensus 166 CpIc~~~~~dPv-~~~cGhtfc~~ci~~~~~-~~~~~CP~c 204 (1094)
||||++.+.+|+ +++|||+||+.||.+|++ .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 889999999999999999 555679987
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A .... |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.81 E-value=9.3e-06 Score=93.50 Aligned_cols=259 Identities=14% Similarity=0.189 Sum_probs=153.4
Q ss_pred ccccccCcEEEEeeC----CCCeEEEeCCc------ceeecccCCCcEEEEEEeCC--EEEEEE-CCCeEEEEecCC-Cc
Q 001349 779 SPLAFEMVKVLSNGH----DSSADFWNHRE------LVHVDSSENGKVLSIACFRD--KIFSGH-SDGTIKVWTGRG-SI 844 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~----dg~I~vWd~~~------~~~~~~~h~~~V~~l~fspd--~LaSgs-~Dg~I~vWd~~t-~~ 844 (1094)
..+.+++.+|.+... ++.|..|.+.. .+............++++|+ +|+++. .+|+|.++++.. +.
T Consensus 42 l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~ 121 (345)
T PF10282_consen 42 LAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGS 121 (345)
T ss_dssp EEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSE
T ss_pred EEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcc
Confidence 334557777777655 57888887652 22222223455667899886 666665 589999999986 42
Q ss_pred ceeEEEecc-----------cCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCc--eEEEEe--cccCccceeeeecC
Q 001349 845 LHLIQQIRE-----------HTKAVTGLAILQSGEMLYSGSL-DKTARVWSIGNEE--IHCVQV--HDIKDQIQNLAVSN 908 (1094)
Q Consensus 845 ~~~~~~l~~-----------H~~~V~sv~fspdg~~LaSgs~-DgtI~vWdi~~~~--~~~~~~--~~~~~~V~~v~~~~ 908 (1094)
......... -.....++.|+|||+++++... ...|.+|+++... +..... .........+.
T Consensus 122 l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~--- 198 (345)
T PF10282_consen 122 LGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLA--- 198 (345)
T ss_dssp EEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEE---
T ss_pred cceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEE---
Confidence 222211111 1245789999999998888753 3479999998764 322111 12222333443
Q ss_pred ceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECC--CCceeEEeccceee-cC--CCCC
Q 001349 909 SILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA--TGTFATIQTGHRKL-LG--KANP 983 (1094)
Q Consensus 909 ~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~--~~~~~~~~~~~~~~-~~--h~~~ 983 (1094)
|+|+|+.+ .++.-.+++|.+|++. ++........ ..+ .+ ....
T Consensus 199 ----f~pdg~~~---------------------------Yv~~e~s~~v~v~~~~~~~g~~~~~~~~-~~~~~~~~~~~~ 246 (345)
T PF10282_consen 199 ----FSPDGKYA---------------------------YVVNELSNTVSVFDYDPSDGSLTEIQTI-STLPEGFTGENA 246 (345)
T ss_dssp ----E-TTSSEE---------------------------EEEETTTTEEEEEEEETTTTEEEEEEEE-ESCETTSCSSSS
T ss_pred ----EcCCcCEE---------------------------EEecCCCCcEEEEeecccCCceeEEEEe-eeccccccccCC
Confidence 88888764 3334456667777766 4432221110 111 01 1136
Q ss_pred eEEEEEeCCccEEEEEECCCCEEEEEECC--CCe--EEEEec-CCCCEEEEEEeCC--EEEEEE-cCCeEEEEEC--CCC
Q 001349 984 VHALQVHNGLVYTASTSLDGAAVKMWSTS--NYN--MVGSLP-TLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQ--KRQ 1053 (1094)
Q Consensus 984 V~sl~fs~~~~~las~s~Dg~~I~iwd~~--~~~--~~~~~~-~~~~v~~l~~spd--~l~sgs-~dg~I~vwd~--~t~ 1053 (1094)
...+.++|++.++..+.....+|.+|++. ++. .+..+. .+...+.++++|+ +++++. .++.|.+|++ .+|
T Consensus 247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG 326 (345)
T PF10282_consen 247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTG 326 (345)
T ss_dssp EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCC
Confidence 78899999999988887766799999993 333 344444 4566899999988 666665 6689999976 566
Q ss_pred cEEEEecccCCcceEEEEE
Q 001349 1054 IRIETLQTGTSGKVQCMAL 1072 (1094)
Q Consensus 1054 ~~~~~l~~~h~~~I~~l~~ 1072 (1094)
.+...-....-....||.|
T Consensus 327 ~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 327 KLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEEEEEEESSSEEEEEE
T ss_pred cEEEecccccCCCCEEEeC
Confidence 6544332122335666665
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1e-06 Score=100.72 Aligned_cols=181 Identities=16% Similarity=0.184 Sum_probs=126.6
Q ss_pred CEEEEEECCCeEEEEecCCCcceeEEEecc--c-CCCeEEEEE--------------------ecCCCEEEEEeCCCcEE
Q 001349 824 DKIFSGHSDGTIKVWTGRGSILHLIQQIRE--H-TKAVTGLAI--------------------LQSGEMLYSGSLDKTAR 880 (1094)
Q Consensus 824 d~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~--H-~~~V~sv~f--------------------spdg~~LaSgs~DgtI~ 880 (1094)
+++|....||.+++||..++ +....|.. | ++..++..| +.|...++-|...|.|-
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~--~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKN--QLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred heEeecCCCCeEEEEEccCc--eeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 37888888888888888877 33333321 1 223333333 22344677777788888
Q ss_pred EEECCCCceEEEEe-cccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC--CEEEEEEcCCeE
Q 001349 881 VWSIGNEEIHCVQV-HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ--GKVYCGCQDGAI 957 (1094)
Q Consensus 881 vWdi~~~~~~~~~~-~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~--~~l~sgs~Dg~I 957 (1094)
+|++..|++..... ..|.++|..+ .+.+ +.|++++.|+.+
T Consensus 84 ~ys~~~g~it~~~st~~h~~~v~~~-------------------------------------~~~~~~~ciyS~~ad~~v 126 (541)
T KOG4547|consen 84 LYSVAGGEITAKLSTDKHYGNVNEI-------------------------------------LDAQRLGCIYSVGADLKV 126 (541)
T ss_pred EEEecCCeEEEEEecCCCCCcceee-------------------------------------ecccccCceEecCCceeE
Confidence 88888876443333 3344444443 3332 359999999999
Q ss_pred EEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--
Q 001349 958 QEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE-- 1034 (1094)
Q Consensus 958 ~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd-- 1034 (1094)
.+|+...+..+ ..+.+....+.+++++||+..+++++ ++|++||+.+++.+.+|+ |.+.|+++.|-.+
T Consensus 127 ~~~~~~~~~~~------~~~~~~~~~~~sl~is~D~~~l~~as---~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~ 197 (541)
T KOG4547|consen 127 VYILEKEKVII------RIWKEQKPLVSSLCISPDGKILLTAS---RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLID 197 (541)
T ss_pred EEEecccceee------eeeccCCCccceEEEcCCCCEEEecc---ceEEEEEccCceEEEEecCCCcceEEEEEEEecc
Confidence 99999998887 45555667899999999999999885 599999999999999999 6788999888543
Q ss_pred -----EEE-EEEcCCeEEEEECCC
Q 001349 1035 -----LVY-LGCKGGTVEIWDQKR 1052 (1094)
Q Consensus 1035 -----~l~-sgs~dg~I~vwd~~t 1052 (1094)
++. +...+..+.+|-+..
T Consensus 198 g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 198 GIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ccccceeeeccccccceeEEEEEc
Confidence 333 344556677886543
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.2e-07 Score=98.01 Aligned_cols=233 Identities=18% Similarity=0.251 Sum_probs=159.4
Q ss_pred ceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC-CCceEEEEecccCccceeeeecCceEEEeeCCCeEEEE
Q 001349 845 LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIG-NEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVH 923 (1094)
Q Consensus 845 ~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~-~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~ 923 (1094)
...++.++||.+.|+....-|...-+++.+.|.++|||--+ .++...-..+..+.++..+. +.+....+.++
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~-------y~~e~~~L~vg 86 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAME-------YVSESRRLYVG 86 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEee-------eeccceEEEEE
Confidence 35667789999999999888888889999999999999644 44433333344566777776 88888999999
Q ss_pred EeCCeEEEEc----------------CCCCceEEEEe--CCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeE
Q 001349 924 LRNGKTKLLN----------------SSKYPKCLALV--QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVH 985 (1094)
Q Consensus 924 ~~~g~i~l~~----------------~~~~v~~l~~s--~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~ 985 (1094)
..+|++.-+. +...+..+.|+ +..+++.+.|..+.---.+.+..+..+ .+. ..-+
T Consensus 87 ~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y----~~~---~~~t 159 (404)
T KOG1409|consen 87 QDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGY----NFE---TPAS 159 (404)
T ss_pred EecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccce----Eee---ccCC
Confidence 9999887654 23456666665 356888888877765555544433110 010 0111
Q ss_pred EEEEeCCccEEEEEECCCCEEEEEEC--CCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEec
Q 001349 986 ALQVHNGLVYTASTSLDGAAVKMWST--SNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQ 1060 (1094)
Q Consensus 986 sl~fs~~~~~las~s~Dg~~I~iwd~--~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~ 1060 (1094)
.+.+.-. +...|...| .|..-.+ ..-.++.++. |.+.+++++|.+. .+++|..|..|.+||+...+-+....
T Consensus 160 ~~~~d~~--~~fvGd~~g-qvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el 236 (404)
T KOG1409|consen 160 ALQFDAL--YAFVGDHSG-QITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYEL 236 (404)
T ss_pred CCceeeE--EEEeccccc-ceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeee
Confidence 1111111 222222222 3332222 2344556666 7889999999987 89999999999999998766444444
Q ss_pred ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1061 TGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1061 ~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
.+|.+.|..+..-+--+.+++++.||.|-+|+++
T Consensus 237 ~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 237 QGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred ccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 6899999999888888999999999999999974
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.5e-07 Score=98.62 Aligned_cols=273 Identities=12% Similarity=0.191 Sum_probs=165.1
Q ss_pred cCCCcEEEEEEeC--CEEEEEECCCeEEEEecCC---CcceeEEEecccCC------------CeEEEEEecCC--CEEE
Q 001349 811 SENGKVLSIACFR--DKIFSGHSDGTIKVWTGRG---SILHLIQQIREHTK------------AVTGLAILQSG--EMLY 871 (1094)
Q Consensus 811 ~h~~~V~~l~fsp--d~LaSgs~Dg~I~vWd~~t---~~~~~~~~l~~H~~------------~V~sv~fspdg--~~La 871 (1094)
...+-|.+|.|.. ++|+||+.+|.|.++.-.. +.......++.|.. .|..+.|.+++ ..+.
T Consensus 23 teadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 23 TEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred chhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 3456788999986 4999999999999995432 23345556666653 58889999864 4677
Q ss_pred EEeCCCcEEEEECCCCceEEE----EecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEc--CCCCceEEEEeC
Q 001349 872 SGSLDKTARVWSIGNEEIHCV----QVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN--SSKYPKCLALVQ 945 (1094)
Q Consensus 872 Sgs~DgtI~vWdi~~~~~~~~----~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~--~~~~v~~l~~s~ 945 (1094)
..+.|++|++|.+.....+.- ........+.++.. ....+....+... ..+++. |.-.|.++.++.
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~----p~~~~~~~~vea~----prRv~aNaHtyhiNSIS~Ns 174 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL----PVEGRHDLEVEAS----PRRVYANAHTYHINSISVNS 174 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeec----eeeccccceeeee----eeeeccccceeEeeeeeecC
Confidence 778899999999876432210 00001112222221 0122222221111 112222 345678888875
Q ss_pred -CEEEEEEcCCeEEEEECCCCcee-EEe-ccceeecCCCCCeEEEEEeCCcc-EEEEEECCCCEEEEEECCCCeEEE---
Q 001349 946 -GKVYCGCQDGAIQEIDLATGTFA-TIQ-TGHRKLLGKANPVHALQVHNGLV-YTASTSLDGAAVKMWSTSNYNMVG--- 1018 (1094)
Q Consensus 946 -~~l~sgs~Dg~I~iwDl~~~~~~-~~~-~~~~~~~~h~~~V~sl~fs~~~~-~las~s~Dg~~I~iwd~~~~~~~~--- 1018 (1094)
...+....|=.|.+|++.-...- .+. ..+..+..-+.-|++..|||... .++-.+..| +|++-|++...+..
T Consensus 175 D~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKG-tIrLcDmR~~aLCd~hs 253 (433)
T KOG1354|consen 175 DKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKG-TIRLCDMRQSALCDAHS 253 (433)
T ss_pred ccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCC-cEEEeechhhhhhcchh
Confidence 45777778899999998643221 110 00111222234688899998643 444444454 99999998532211
Q ss_pred -Eec-------------CCCCEEEEEEeCCEEEEEEcC-CeEEEEECC-CCcEEEEecccCCc------------c---e
Q 001349 1019 -SLP-------------TLSEVRAMVVSSELVYLGCKG-GTVEIWDQK-RQIRIETLQTGTSG------------K---V 1067 (1094)
Q Consensus 1019 -~~~-------------~~~~v~~l~~spd~l~sgs~d-g~I~vwd~~-t~~~~~~l~~~h~~------------~---I 1067 (1094)
.+. --..|..+.|++++-+.-+.| -+|++||+. ..+++.+++ -|.. . -
T Consensus 254 KlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~-vh~~lr~kLc~lYEnD~IfdK 332 (433)
T KOG1354|consen 254 KLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYP-VHEYLRSKLCSLYENDAIFDK 332 (433)
T ss_pred hhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEe-ehHhHHHHHHHHhhccchhhe
Confidence 111 024577889998833333444 799999994 455666663 3421 2 2
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1068 QCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1068 ~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
..++|+-++.+++||+..+.++++++
T Consensus 333 Fec~~sg~~~~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 333 FECSWSGNDSYVMTGSYNNVFRVFNL 358 (433)
T ss_pred eEEEEcCCcceEecccccceEEEecC
Confidence 46789999999999999999999984
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.9e-06 Score=90.09 Aligned_cols=245 Identities=16% Similarity=0.138 Sum_probs=156.5
Q ss_pred ccccccCcEEEE-eeCCCCeEEEeCCccee--ecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEec
Q 001349 779 SPLAFEMVKVLS-NGHDSSADFWNHRELVH--VDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIR 852 (1094)
Q Consensus 779 ~~~~~d~~~l~s-~s~dg~I~vWd~~~~~~--~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~ 852 (1094)
.-+..|..++++ ...++.|.+|++.+... ......+++.+++|||| .|.+..-|-.|.||.+.+.. . ..++
T Consensus 54 ieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~--~-~~~~ 130 (447)
T KOG4497|consen 54 IEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK--G-YLLP 130 (447)
T ss_pred eeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce--e-EEec
Confidence 344456665555 46678999999985432 33445678999999997 78888899999999999872 2 2233
Q ss_pred ccCCCeEEEEEecCCCEEEEEeCC------------------------------------CcEEEEECCCCceEEEEecc
Q 001349 853 EHTKAVTGLAILQSGEMLYSGSLD------------------------------------KTARVWSIGNEEIHCVQVHD 896 (1094)
Q Consensus 853 ~H~~~V~sv~fspdg~~LaSgs~D------------------------------------gtI~vWdi~~~~~~~~~~~~ 896 (1094)
-....+..++|+|||++.+.+++- ..+-|||.--. ..+...+
T Consensus 131 ~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le--ykv~aYe 208 (447)
T KOG4497|consen 131 HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE--YKVYAYE 208 (447)
T ss_pred ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh--heeeeee
Confidence 234456889999999988776541 11222322110 0000111
Q ss_pred cCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC-----------------------------------------
Q 001349 897 IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS----------------------------------------- 935 (1094)
Q Consensus 897 ~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~----------------------------------------- 935 (1094)
..-.+..+ .|+|.++.+++++.|+.+++.+|-
T Consensus 209 ~~lG~k~v-------~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p 281 (447)
T KOG4497|consen 209 RGLGLKFV-------EWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTP 281 (447)
T ss_pred eccceeEE-------EeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCC
Confidence 11233333 389999999999999888766530
Q ss_pred -------------------------------------CCceEEEEeCCEEEEEE-cC---CeEEEEECCCCceeEEeccc
Q 001349 936 -------------------------------------KYPKCLALVQGKVYCGC-QD---GAIQEIDLATGTFATIQTGH 974 (1094)
Q Consensus 936 -------------------------------------~~v~~l~~s~~~l~sgs-~D---g~I~iwDl~~~~~~~~~~~~ 974 (1094)
-.+.-++|+.+.-+.+. .| +.+-+||++.-+...
T Consensus 282 ~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~a----- 356 (447)
T KOG4497|consen 282 TDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHA----- 356 (447)
T ss_pred CccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhh-----
Confidence 01233455543333332 23 357899998766532
Q ss_pred eeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCC
Q 001349 975 RKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGG 1043 (1094)
Q Consensus 975 ~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg 1043 (1094)
+.....+|....|+|+...++.+... ..+.+|.......+..-..+..|..+.|.-+ .++..+.|.
T Consensus 357 --vLiQk~piraf~WdP~~prL~vctg~-srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 357 --VLIQKHPIRAFEWDPGRPRLVVCTGK-SRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred --hhhhccceeEEEeCCCCceEEEEcCC-ceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCc
Confidence 22344689999999988777766544 4799998876555555445678889998754 666666664
|
|
| >KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3e-09 Score=108.30 Aligned_cols=55 Identities=22% Similarity=0.520 Sum_probs=49.0
Q ss_pred ceeccCccccccCcEEcCCcccccHHhHHHHHHhC--CCCCCCCCcCCCCCCCCChhH
Q 001349 163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERG--NSSCPITRQKLSSTKLPKTNY 218 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~--~~~CP~c~~~~~~~~~~~pN~ 218 (1094)
.|.|.||++.-+|||++.|||-||..||.+|+... ...||+|+..++.+.++ |=+
T Consensus 47 ~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vv-PlY 103 (230)
T KOG0823|consen 47 FFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVV-PLY 103 (230)
T ss_pred ceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEE-eee
Confidence 89999999999999999999999999999999853 33599999999988886 654
|
|
| >KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.4e-09 Score=101.36 Aligned_cols=51 Identities=22% Similarity=0.608 Sum_probs=44.9
Q ss_pred ceeccCccccccC--cEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCC
Q 001349 163 DFVCPITTHIFDD--PVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLP 214 (1094)
Q Consensus 163 ~~~CpIc~~~~~d--Pv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~ 214 (1094)
-+.||||++-+.. ||.+.|||.||+.||...++.+ ..||.|++.++.++++
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~-~~CP~C~kkIt~k~~~ 183 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNT-NKCPTCRKKITHKQFH 183 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHHhC-CCCCCcccccchhhhe
Confidence 5899999999986 5668999999999999999884 4799999999888775
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.3e-06 Score=108.67 Aligned_cols=240 Identities=8% Similarity=0.038 Sum_probs=139.8
Q ss_pred CcEEEEeeCCCCeEEEeCCcceeecccC---------------CCcEEEEEEeCC--EEEEE-ECCCeEEEEecCCCcce
Q 001349 785 MVKVLSNGHDSSADFWNHRELVHVDSSE---------------NGKVLSIACFRD--KIFSG-HSDGTIKVWTGRGSILH 846 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~~~~~~~~~h---------------~~~V~~l~fspd--~LaSg-s~Dg~I~vWd~~t~~~~ 846 (1094)
+..+++-+.++.|++||.........+- -.....+++.++ .|+.+ ...+.|+++|..++
T Consensus 580 g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~--- 656 (1057)
T PLN02919 580 NRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNE--- 656 (1057)
T ss_pred CeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCC---
Confidence 4466666778889999987332211111 123578889864 44444 45678999999877
Q ss_pred eEEEeccc-----------------CCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCceEEEEecccCc------cce
Q 001349 847 LIQQIREH-----------------TKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKD------QIQ 902 (1094)
Q Consensus 847 ~~~~l~~H-----------------~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~------~V~ 902 (1094)
.+.++.+- -..-+.++|+| ++.++++.+.++.|++||..++....+....... ...
T Consensus 657 ~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~ 736 (1057)
T PLN02919 657 TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTS 736 (1057)
T ss_pred EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCcccc
Confidence 23333210 11346899999 5667777788899999999887533222110000 000
Q ss_pred eeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccc-------e
Q 001349 903 NLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGH-------R 975 (1094)
Q Consensus 903 ~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~-------~ 975 (1094)
.....+..++|+|+|..+ +++-+.++.|++||+.++.......+. .
T Consensus 737 ~~~~~P~GIavspdG~~L---------------------------YVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~ 789 (1057)
T PLN02919 737 TSFAQPSGISLSPDLKEL---------------------------YIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLF 789 (1057)
T ss_pred ccccCccEEEEeCCCCEE---------------------------EEEECCCCeEEEEECCCCcEEEEEecccccCcccc
Confidence 011123334455555432 233344456666666554422111000 0
Q ss_pred eec--------CCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCC--------------CCEEEEEEeC
Q 001349 976 KLL--------GKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTL--------------SEVRAMVVSS 1033 (1094)
Q Consensus 976 ~~~--------~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~--------------~~v~~l~~sp 1033 (1094)
.+. ..-.....+++++++.+.++-+.+ +.|++||..++........+ .....+++++
T Consensus 790 ~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N-~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~ 868 (1057)
T PLN02919 790 KFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN-HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE 868 (1057)
T ss_pred cccCCCCchhhhhccCCceeeEeCCCcEEEEECCC-CEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC
Confidence 000 011234588899988777776666 49999999887665433211 2467899988
Q ss_pred C--EEEEEEcCCeEEEEECCCCcE
Q 001349 1034 E--LVYLGCKGGTVEIWDQKRQIR 1055 (1094)
Q Consensus 1034 d--~l~sgs~dg~I~vwd~~t~~~ 1055 (1094)
+ .+++-+.++.|++||+.+++.
T Consensus 869 dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 869 NGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCEEEEECCCCEEEEEECCCCcc
Confidence 7 566667889999999988764
|
|
| >PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.2e-09 Score=79.61 Aligned_cols=36 Identities=28% Similarity=0.748 Sum_probs=23.1
Q ss_pred ccCccccccC----cEEcCCcccccHHhHHHHHHhC---CCCCC
Q 001349 166 CPITTHIFDD----PVTLETGQTYERRAIQEWIERG---NSSCP 202 (1094)
Q Consensus 166 CpIc~~~~~d----Pv~~~cGhtfc~~ci~~~~~~~---~~~CP 202 (1094)
||||.+ |.+ |++++|||+||+.||++++..+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 999 9999999999999999999864 23477
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.3e-07 Score=102.52 Aligned_cols=270 Identities=12% Similarity=0.086 Sum_probs=176.7
Q ss_pred cCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCc-------------ceeEEEecccCCCeEEEEEecCCCEEEEEeC
Q 001349 811 SENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI-------------LHLIQQIREHTKAVTGLAILQSGEMLYSGSL 875 (1094)
Q Consensus 811 ~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~-------------~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~ 875 (1094)
..+....|+.|+.+ +++.|+.||.++|-.+.+.. ...-+++.||.+.|.-+.|+.+.+.|-|...
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 34667899999985 99999999999999776431 1223567899999999999999999999999
Q ss_pred CCcEEEEECCCCceE-EEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEE--------EEcCC---CCceEEEE
Q 001349 876 DKTARVWSIGNEEIH-CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK--------LLNSS---KYPKCLAL 943 (1094)
Q Consensus 876 DgtI~vWdi~~~~~~-~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~--------l~~~~---~~v~~l~~ 943 (1094)
+|.|.||-+-.|.+. .......++-|.++. |..||..+.+...||.+. +|+.. .....+.+
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~Sms-------Wn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~w 164 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMS-------WNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLW 164 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEE-------EcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceee
Confidence 999999998776521 111122345566666 888888888888887664 44432 23345556
Q ss_pred eCCE--EEEEEcCCeEEEEECCCCcee-----EEeccceeecCCCCCeEEEEEe--------CCccEEEEEECCCCEEEE
Q 001349 944 VQGK--VYCGCQDGAIQEIDLATGTFA-----TIQTGHRKLLGKANPVHALQVH--------NGLVYTASTSLDGAAVKM 1008 (1094)
Q Consensus 944 s~~~--l~sgs~Dg~I~iwDl~~~~~~-----~~~~~~~~~~~h~~~V~sl~fs--------~~~~~las~s~Dg~~I~i 1008 (1094)
+++. ++.+-.+|.+++||....-.. ....+...+......|-.+.|. |+...++.+-..| .+.|
T Consensus 165 s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nG-r~Qi 243 (1189)
T KOG2041|consen 165 SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANG-RMQI 243 (1189)
T ss_pred cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCc-eehh
Confidence 6532 566777899999986533111 0011111122222234455552 5777778777666 6666
Q ss_pred EECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcC---------CeEEEEECCCCcEEEEecccCCcceEEEEEcCCCC
Q 001349 1009 WSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKG---------GTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE 1077 (1094)
Q Consensus 1009 wd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~d---------g~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~ 1077 (1094)
..-.+......+..+..+....|+++ .+++++.+ +.|.+|. .-|+.+.+++ -....|++++|-..|-
T Consensus 244 MR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlk-vpg~~It~lsWEg~gL 321 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLK-VPGSCITGLSWEGTGL 321 (1189)
T ss_pred hhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEe-cCCceeeeeEEcCCce
Confidence 65444333334455677888999998 56666543 3455554 3467778885 4556899999987776
Q ss_pred EEEEEeCCCcEEEE
Q 001349 1078 FLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1078 ~L~sgs~DG~I~iW 1091 (1094)
.++.+ .|+.|++=
T Consensus 322 riA~A-vdsfiyfa 334 (1189)
T KOG2041|consen 322 RIAIA-VDSFIYFA 334 (1189)
T ss_pred EEEEE-ecceEEEE
Confidence 66554 46666553
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=3e-06 Score=100.22 Aligned_cols=218 Identities=11% Similarity=0.021 Sum_probs=127.2
Q ss_pred CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCE--E-EEEeCCC--cEEEEECCCCceEEEEecccCccceeeeec
Q 001349 833 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEM--L-YSGSLDK--TARVWSIGNEEIHCVQVHDIKDQIQNLAVS 907 (1094)
Q Consensus 833 g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~--L-aSgs~Dg--tI~vWdi~~~~~~~~~~~~~~~~V~~v~~~ 907 (1094)
+.|.+.|..++.. +.+..+...+.+-.|||||+. + ++...+| .|.+.++.+++...+... ......
T Consensus 165 ~~l~~~d~dG~~~---~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~--~g~~~~---- 235 (428)
T PRK01029 165 GELWSVDYDGQNL---RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL--QGNQLM---- 235 (428)
T ss_pred ceEEEEcCCCCCc---eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC--CCCccc----
Confidence 4677778877632 334445556678899999975 2 2444443 577778888764444332 222222
Q ss_pred CceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCC---ceeEEeccceeecCCCCCe
Q 001349 908 NSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATG---TFATIQTGHRKLLGKANPV 984 (1094)
Q Consensus 908 ~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~---~~~~~~~~~~~~~~h~~~V 984 (1094)
..|+|||+.++...... |..|..+..||+.++ ..... ..++....
T Consensus 236 ---p~wSPDG~~Laf~s~~~-----------------------g~~di~~~~~~~~~g~~g~~~~l------t~~~~~~~ 283 (428)
T PRK01029 236 ---PTFSPRKKLLAFISDRY-----------------------GNPDLFIQSFSLETGAIGKPRRL------LNEAFGTQ 283 (428)
T ss_pred ---eEECCCCCEEEEEECCC-----------------------CCcceeEEEeecccCCCCcceEe------ecCCCCCc
Confidence 23999999876543210 111233445666543 22111 11122234
Q ss_pred EEEEEeCCccEEEEEECCCCEEEEE--ECCC-CeEEEEec-CCCCEEEEEEeCC--EEEEEEc-C--CeEEEEECCCCcE
Q 001349 985 HALQVHNGLVYTASTSLDGAAVKMW--STSN-YNMVGSLP-TLSEVRAMVVSSE--LVYLGCK-G--GTVEIWDQKRQIR 1055 (1094)
Q Consensus 985 ~sl~fs~~~~~las~s~Dg~~I~iw--d~~~-~~~~~~~~-~~~~v~~l~~spd--~l~sgs~-d--g~I~vwd~~t~~~ 1055 (1094)
....|+||+..++..+..++...+| ++.. +.....+. +...+....|+|| .++..+. + ..|++||+.+++.
T Consensus 284 ~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~ 363 (428)
T PRK01029 284 GNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD 363 (428)
T ss_pred CCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe
Confidence 5679999999877766433344555 4432 22334344 3456678899998 4554433 2 4799999998876
Q ss_pred EEEecccCCcceEEEEEcCCCCEEEEEeC---CCcEEEEeC
Q 001349 1056 IETLQTGTSGKVQCMALDDNEEFLVIGTS---DGRIQAWGL 1093 (1094)
Q Consensus 1056 ~~~l~~~h~~~I~~l~~Spdg~~L~sgs~---DG~I~iWdl 1093 (1094)
.... .....+....|+|||+.|+..+. ++.|++||+
T Consensus 364 ~~Lt--~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl 402 (428)
T PRK01029 364 YQLT--TSPENKESPSWAIDSLHLVYSAGNSNESELYLISL 402 (428)
T ss_pred EEcc--CCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence 4333 22345778999999998875433 345777775
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.9e-06 Score=96.46 Aligned_cols=303 Identities=14% Similarity=0.144 Sum_probs=189.1
Q ss_pred CcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeC-------------C-EEEEEECCCeEEEEecCCCcceeE
Q 001349 785 MVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR-------------D-KIFSGHSDGTIKVWTGRGSILHLI 848 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fsp-------------d-~LaSgs~Dg~I~vWd~~t~~~~~~ 848 (1094)
+..++.|+. ..|.|-|.. +.++.+..|...|+.+.|.| + .|+++...|.|.+||+..+ ..+
T Consensus 26 ~GLiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~--s~~ 102 (1062)
T KOG1912|consen 26 SGLIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA--SVI 102 (1062)
T ss_pred cceEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh--hhh
Confidence 345666555 456666765 56788889999999999986 1 6888999999999999988 677
Q ss_pred EEecccCCCeEEEEEec---CC-CEEEEEeCCCcEEEEECCCCceEEEEecccCcc-ceeeeecC---ce----------
Q 001349 849 QQIREHTKAVTGLAILQ---SG-EMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQ-IQNLAVSN---SI---------- 910 (1094)
Q Consensus 849 ~~l~~H~~~V~sv~fsp---dg-~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~-V~~v~~~~---~~---------- 910 (1094)
..+..|.++|..+.|-+ +. ..|+.-....++.+|+..+|+.. ..+..... ..++.+.| ..
T Consensus 103 ~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~--Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~v 180 (1062)
T KOG1912|consen 103 NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKF--WKYDYSHEILSCFRVDPFDSRHFCVLGSKGFV 180 (1062)
T ss_pred hhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCcee--eccccCCcceeeeeeCCCCcceEEEEccCceE
Confidence 78888999999999987 34 56677777789999999988621 11111111 11121111 11
Q ss_pred -------------------------------------------------------EEEeeCCCeEEEEEeCCeEEEEcC-
Q 001349 911 -------------------------------------------------------LCFIPQGAGIKVHLRNGKTKLLNS- 934 (1094)
Q Consensus 911 -------------------------------------------------------~~fspdg~~l~~~~~~g~i~l~~~- 934 (1094)
.+|+|.-+.+........+.++|.
T Consensus 181 l~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle 260 (1062)
T KOG1912|consen 181 LSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLE 260 (1062)
T ss_pred EEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcch
Confidence 112222222222233333333332
Q ss_pred -----------CCCceEEEEeC----CEEEEEEcCCeEEEEECCC----------------CceeEEeccce--------
Q 001349 935 -----------SKYPKCLALVQ----GKVYCGCQDGAIQEIDLAT----------------GTFATIQTGHR-------- 975 (1094)
Q Consensus 935 -----------~~~v~~l~~s~----~~l~sgs~Dg~I~iwDl~~----------------~~~~~~~~~~~-------- 975 (1094)
.+.+.-+.+-| +.++++..||.+.+|-.+. +..........
T Consensus 261 ~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~ 340 (1062)
T KOG1912|consen 261 YECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGA 340 (1062)
T ss_pred hhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceee
Confidence 12222233322 3488888888888886543 11110000000
Q ss_pred -------------------------------------------------------------eecCCCCCeEEEEEeC---
Q 001349 976 -------------------------------------------------------------KLLGKANPVHALQVHN--- 991 (1094)
Q Consensus 976 -------------------------------------------------------------~~~~h~~~V~sl~fs~--- 991 (1094)
...+|....++...+|
T Consensus 341 ~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~ 420 (1062)
T KOG1912|consen 341 SCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPE 420 (1062)
T ss_pred cCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcc
Confidence 0012333333332221
Q ss_pred --------Cc-------cEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC-EEEEEE----------cCCe
Q 001349 992 --------GL-------VYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE-LVYLGC----------KGGT 1044 (1094)
Q Consensus 992 --------~~-------~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd-~l~sgs----------~dg~ 1044 (1094)
.+ .+++.|...| +|.++|+.++.....+. |...|.++.|-++ .+++.+ .-+.
T Consensus 421 ~t~~~~~p~~n~~~~~~pLvAvGT~sG-TV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~ 499 (1062)
T KOG1912|consen 421 LTKVENDPGGNTPAGTVPLVAVGTNSG-TVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRND 499 (1062)
T ss_pred cceeecCCCCCccceeeeeEEeecCCc-eEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeee
Confidence 11 2345555555 99999999998888887 8889999999887 344433 2346
Q ss_pred EEEEECCCCcE--EEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1045 VEIWDQKRQIR--IETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1045 I~vwd~~t~~~--~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
+.|-|+++|.. ++.++.....+|..+..|..|+||+..-.|.-+.+||+
T Consensus 500 l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~ 550 (1062)
T KOG1912|consen 500 LVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDL 550 (1062)
T ss_pred EEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhh
Confidence 77889988853 33344445669999999999999999999999999987
|
|
| >PHA02929 N1R/p28-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-08 Score=107.30 Aligned_cols=47 Identities=21% Similarity=0.458 Sum_probs=40.6
Q ss_pred CceeccCccccccCc--------EEcCCcccccHHhHHHHHHhCCCCCCCCCcCCC
Q 001349 162 KDFVCPITTHIFDDP--------VTLETGQTYERRAIQEWIERGNSSCPITRQKLS 209 (1094)
Q Consensus 162 ~~~~CpIc~~~~~dP--------v~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~ 209 (1094)
++..||||++.+.++ ++++|||.||+.||.+|+.. +.+||+||..+.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 478999999987764 56799999999999999986 668999998775
|
|
| >PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.4e-08 Score=80.85 Aligned_cols=46 Identities=30% Similarity=0.533 Sum_probs=40.7
Q ss_pred ceeccCccccccCcEEcCCccc-ccHHhHHHHHHhCCCCCCCCCcCCC
Q 001349 163 DFVCPITTHIFDDPVTLETGQT-YERRAIQEWIERGNSSCPITRQKLS 209 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~~cGht-fc~~ci~~~~~~~~~~CP~c~~~~~ 209 (1094)
+..|+||++-+.++++++|||. ||..|+.+|+.. ...||.||+++.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhc
Confidence 6889999999999999999999 999999999985 668999999875
|
... |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.67 E-value=7e-08 Score=107.51 Aligned_cols=216 Identities=13% Similarity=0.166 Sum_probs=146.7
Q ss_pred eeecccCCCcEEEEEEeC--CEEEEEECCCeEEEEecCCC-----cceeEEEecccCCCeEEEEEecCCCEEEEEeCCCc
Q 001349 806 VHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGS-----ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKT 878 (1094)
Q Consensus 806 ~~~~~~h~~~V~~l~fsp--d~LaSgs~Dg~I~vWd~~t~-----~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~Dgt 878 (1094)
...+.||...|..++-.. +-+++++.|.+|++|.++.. ...|..+++.|+.+|.++.|-.+-++++++ ||-
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 345678999998887654 38999999999999987631 225888999999999999999988887754 788
Q ss_pred EEEEECCCCceEE-EEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCE--EEEEEcCC
Q 001349 879 ARVWSIGNEEIHC-VQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGK--VYCGCQDG 955 (1094)
Q Consensus 879 I~vWdi~~~~~~~-~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~--l~sgs~Dg 955 (1094)
|.+||.--|.... +...+..+. .+.|.|+.-.+.. ++.++...
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a----------------------------------~~~ikcl~nv~~~iliAgcsaeS 851 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGA----------------------------------GGNIKCLENVDRHILIAGCSAES 851 (1034)
T ss_pred ceeecccccchhHhhhcCcccCC----------------------------------CceeEecccCcchheeeeccchh
Confidence 9999976553111 110000111 1223333332222 33347788
Q ss_pred eEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecC-CCCEEEEEEeCC
Q 001349 956 AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT-LSEVRAMVVSSE 1034 (1094)
Q Consensus 956 ~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~-~~~v~~l~~spd 1034 (1094)
+|+++|.+.+........- .-.+....+.+++..+.|.+++.+-..| +|.+.|.++|+.+.++.. .-....++--.|
T Consensus 852 TVKl~DaRsce~~~E~kVc-na~~Pna~~R~iaVa~~GN~lAa~LSnG-ci~~LDaR~G~vINswrpmecdllqlaapsd 929 (1034)
T KOG4190|consen 852 TVKLFDARSCEWTCELKVC-NAPGPNALTRAIAVADKGNKLAAALSNG-CIAILDARNGKVINSWRPMECDLLQLAAPSD 929 (1034)
T ss_pred hheeeecccccceeeEEec-cCCCCchheeEEEeccCcchhhHHhcCC-cEEEEecCCCceeccCCcccchhhhhcCchh
Confidence 9999999988766443211 1123446688999999999988887776 999999999998887662 223333443334
Q ss_pred -EEEEEEcCCeEEE-EECCCCcEEEEe
Q 001349 1035 -LVYLGCKGGTVEI-WDQKRQIRIETL 1059 (1094)
Q Consensus 1035 -~l~sgs~dg~I~v-wd~~t~~~~~~l 1059 (1094)
.++....|.++.| |..-+|......
T Consensus 930 q~L~~saldHslaVnWhaldgimh~q~ 956 (1034)
T KOG4190|consen 930 QALAQSALDHSLAVNWHALDGIMHLQD 956 (1034)
T ss_pred HHHHhhcccceeEeeehhcCCeeeecc
Confidence 6666777888888 887776554444
|
|
| >KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.9e-09 Score=107.49 Aligned_cols=52 Identities=21% Similarity=0.494 Sum_probs=46.8
Q ss_pred CceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCC
Q 001349 162 KDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLP 214 (1094)
Q Consensus 162 ~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~ 214 (1094)
..+.|.||++-+.+|--++|||-||..||..|... ...||.||+.+++..++
T Consensus 238 a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKVI 289 (293)
T ss_pred CCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCccee
Confidence 36899999999999999999999999999999987 44699999999877654
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.3e-07 Score=105.35 Aligned_cols=263 Identities=14% Similarity=0.197 Sum_probs=161.8
Q ss_pred cCcEEEEeeCCCCeEEEeCC---------cceeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEe--c
Q 001349 784 EMVKVLSNGHDSSADFWNHR---------ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQI--R 852 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~---------~~~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l--~ 852 (1094)
+-+.+++++.|++|++|.++ .+..++..|+.+|.++.|-.+.-..++.||.|.+||.--+ ..+... .
T Consensus 746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlWDPFig--r~Laq~~da 823 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLWDPFIG--RLLAQMEDA 823 (1034)
T ss_pred cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcceeeccccc--chhHhhhcC
Confidence 45678999999999999876 3667888999999999999986556677899999998766 333322 1
Q ss_pred ccCCCeEEEEEec--CCCEEEEE-eCCCcEEEEECCCCceEEEEecc-cCccceeeeecCceEEEeeCCCeEEEEEeCCe
Q 001349 853 EHTKAVTGLAILQ--SGEMLYSG-SLDKTARVWSIGNEEIHCVQVHD-IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 928 (1094)
Q Consensus 853 ~H~~~V~sv~fsp--dg~~LaSg-s~DgtI~vWdi~~~~~~~~~~~~-~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~ 928 (1094)
...+.+..+..-+ +...+..| +...||+++|.+.++..+..... ...
T Consensus 824 pk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~----------------------------- 874 (1034)
T KOG4190|consen 824 PKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPG----------------------------- 874 (1034)
T ss_pred cccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCC-----------------------------
Confidence 2223344444434 44445444 77899999999987643322211 000
Q ss_pred EEEEcCCCCceEEEEe--CCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEE
Q 001349 929 TKLLNSSKYPKCLALV--QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAV 1006 (1094)
Q Consensus 929 i~l~~~~~~v~~l~~s--~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I 1006 (1094)
++..++++++. ++++++|-.+|.|.+.|.++|+.+.. +.........++ .|....++....|. ++
T Consensus 875 -----Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINs------wrpmecdllqla-apsdq~L~~saldH-sl 941 (1034)
T KOG4190|consen 875 -----PNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINS------WRPMECDLLQLA-APSDQALAQSALDH-SL 941 (1034)
T ss_pred -----CchheeEEEeccCcchhhHHhcCCcEEEEecCCCceecc------CCcccchhhhhc-CchhHHHHhhcccc-ee
Confidence 11223444443 34688888999999999999997732 222222222222 24455666666664 77
Q ss_pred EE-EECCCCeEEEEecC-CCCEEEEEEeCCEEEEEEcCCeEEEEECC-CC---cEEEEec-ccCCcceEEEEEcCCCCEE
Q 001349 1007 KM-WSTSNYNMVGSLPT-LSEVRAMVVSSELVYLGCKGGTVEIWDQK-RQ---IRIETLQ-TGTSGKVQCMALDDNEEFL 1079 (1094)
Q Consensus 1007 ~i-wd~~~~~~~~~~~~-~~~v~~l~~spd~l~sgs~dg~I~vwd~~-t~---~~~~~l~-~~h~~~I~~l~~Spdg~~L 1079 (1094)
.+ |..-++....+.+. ..+..-+.--+--++++...+.+.||--. .. ..+..+. ....+..++++.-|-+..+
T Consensus 942 aVnWhaldgimh~q~kpppepahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~af 1021 (1034)
T KOG4190|consen 942 AVNWHALDGIMHLQDKPPPEPAHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAF 1021 (1034)
T ss_pred EeeehhcCCeeeeccCCCCcchhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchh
Confidence 77 87766655444432 12111111112246666677778888421 11 1111221 1234578888888888888
Q ss_pred EEEeCCCcEEE
Q 001349 1080 VIGTSDGRIQA 1090 (1094)
Q Consensus 1080 ~sgs~DG~I~i 1090 (1094)
..|+..|.|.+
T Consensus 1022 LaGne~G~IaL 1032 (1034)
T KOG4190|consen 1022 LAGNEHGAIAL 1032 (1034)
T ss_pred hccCCCCceee
Confidence 89999998875
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.4e-07 Score=97.53 Aligned_cols=260 Identities=17% Similarity=0.225 Sum_probs=174.0
Q ss_pred hccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcChHH----HHHHHHhcCCChHHHHHhh-----h
Q 001349 322 LFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGLLE----AVVLIDLLRPSTRTLIEMD-----M 392 (1094)
Q Consensus 322 L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g~~~----Aa~~l~~L~~~~~~~~~~~-----~ 392 (1094)
|..+.+..+|+++.-+|++|. ..+++++.++ ..|.+|.||.+||+|..+ +.-+|-++.....+..-+. .
T Consensus 175 LakskdirvqrnatgaLlnmT-hs~EnRr~LV-~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~l 252 (550)
T KOG4224|consen 175 LAKSKDIRVQRNATGALLNMT-HSRENRRVLV-HAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKL 252 (550)
T ss_pred hcccchhhHHHHHHHHHHHhh-hhhhhhhhhh-ccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccch
Confidence 777999999999999999994 4445677777 567999999999999443 4447888877776655444 3
Q ss_pred hHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHH-HHH
Q 001349 393 MESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGI-LLR 471 (1094)
Q Consensus 393 ~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-l~~ 471 (1094)
+|.||.+...++.+ . |.-|-..|..| +...+--..|+..|++|.+++.++. .-....+++. -.+
T Consensus 253 v~~Lv~Lmd~~s~k-v------kcqA~lALrnl------asdt~Yq~eiv~ag~lP~lv~Llqs--~~~plilasVaCIr 317 (550)
T KOG4224|consen 253 VPALVDLMDDGSDK-V------KCQAGLALRNL------ASDTEYQREIVEAGSLPLLVELLQS--PMGPLILASVACIR 317 (550)
T ss_pred HHHHHHHHhCCChH-H------HHHHHHHHhhh------cccchhhhHHHhcCCchHHHHHHhC--cchhHHHHHHHHHh
Confidence 38999998887532 1 22222334444 5556777889999999999999963 3333333331 112
Q ss_pred HhhccCcchhhHhhhcCchhHHHHHHhcCCc-hhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcC
Q 001349 472 CMQEDGKCRNSIADKAELAPVMESFMAASDG-ERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTAN 550 (1094)
Q Consensus 472 ~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~ 550 (1094)
.+.--.-.-..|++.+=+.|||.||+.+... .+++|+..|-.|-...|++ .+.|.+.|.+.- +...+..+|
T Consensus 318 nisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n-----~~~i~esgAi~k---l~eL~lD~p 389 (550)
T KOG4224|consen 318 NISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHN-----VSVIRESGAIPK---LIELLLDGP 389 (550)
T ss_pred hcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhh-----hHHHhhcCchHH---HHHHHhcCC
Confidence 2333344445788999999999999987655 7999999999986644332 345566666665 667777777
Q ss_pred CccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcc
Q 001349 551 HDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQ 608 (1094)
Q Consensus 551 ~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 608 (1094)
-+-|.-+..-+.||.+-++.+.. ..--+-++.||. +..+....+|--||.||.||.
T Consensus 390 vsvqseisac~a~Lal~d~~k~~-lld~gi~~iLIp-~t~s~s~Ev~gNaAaAL~Nls 445 (550)
T KOG4224|consen 390 VSVQSEISACIAQLALNDNDKEA-LLDSGIIPILIP-WTGSESEEVRGNAAAALINLS 445 (550)
T ss_pred hhHHHHHHHHHHHHHhccccHHH-HhhcCCcceeec-ccCccchhhcccHHHHHHhhh
Confidence 77777777778888874333221 111112233333 233334457778899998865
|
|
| >PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.4e-08 Score=78.59 Aligned_cols=40 Identities=43% Similarity=0.963 Sum_probs=34.2
Q ss_pred eccCcccccc---CcEEcCCcccccHHhHHHHHHhCCCCCCCCC
Q 001349 165 VCPITTHIFD---DPVTLETGQTYERRAIQEWIERGNSSCPITR 205 (1094)
Q Consensus 165 ~CpIc~~~~~---dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~ 205 (1094)
.||||++-|. .++.++|||.||..||.+|+.. +..||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 4999999994 4566899999999999999998 56899996
|
... |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.6e-05 Score=86.58 Aligned_cols=150 Identities=13% Similarity=0.157 Sum_probs=109.7
Q ss_pred cCcEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCC--EEEEEECCC-eEEEEecCCCcceeEEEecccCCCeEE
Q 001349 784 EMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDG-TIKVWTGRGSILHLIQQIREHTKAVTG 860 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg-~I~vWd~~t~~~~~~~~l~~H~~~V~s 860 (1094)
+|.+++..|. |..-|.+......+..+|.+.|.-..+..+ -++.|..|| .+-|+|..++ .+..+.+.-+.|.+
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~---e~kr~e~~lg~I~a 406 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG---EVKRIEKDLGNIEA 406 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCc---eEEEeeCCccceEE
Confidence 4667666654 444454444344455678888887777754 889999999 9999999998 45667778889999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceE
Q 001349 861 LAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKC 940 (1094)
Q Consensus 861 v~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~ 940 (1094)
+..++||++++.+-....+-+.|+++|..+.+... ..+-|..+. |+|++++++-+.-+|
T Consensus 407 v~vs~dGK~~vvaNdr~el~vididngnv~~idkS-~~~lItdf~-------~~~nsr~iAYafP~g------------- 465 (668)
T COG4946 407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKS-EYGLITDFD-------WHPNSRWIAYAFPEG------------- 465 (668)
T ss_pred EEEcCCCcEEEEEcCceEEEEEEecCCCeeEeccc-ccceeEEEE-------EcCCceeEEEecCcc-------------
Confidence 99999999999999989999999999975544432 345566666 889999877654433
Q ss_pred EEEeCCEEEEEEcCCeEEEEECCCCceeE
Q 001349 941 LALVQGKVYCGCQDGAIQEIDLATGTFAT 969 (1094)
Q Consensus 941 l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~ 969 (1094)
..-..|++||+.+++...
T Consensus 466 -----------y~tq~Iklydm~~~Kiy~ 483 (668)
T COG4946 466 -----------YYTQSIKLYDMDGGKIYD 483 (668)
T ss_pred -----------eeeeeEEEEecCCCeEEE
Confidence 223467777777766543
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.1e-06 Score=103.15 Aligned_cols=273 Identities=19% Similarity=0.245 Sum_probs=188.9
Q ss_pred CchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcCh----HHHHHHHHhcCCChHHHHHhhhh---HHHHH
Q 001349 326 VDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGL----LEAVVLIDLLRPSTRTLIEMDMM---ESLMT 398 (1094)
Q Consensus 326 ~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g~----~~Aa~~l~~L~~~~~~~~~~~~~---~~Ll~ 398 (1094)
..+++.++++.+|+|| +.+..+..++. ..+-++.|+.+|++++ .-+...|..|+-..+|+..|... |+|+.
T Consensus 261 kQeqLlrv~~~lLlNL-Aed~~ve~kM~-~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~k 338 (708)
T PF05804_consen 261 KQEQLLRVAFYLLLNL-AEDPRVELKMV-NKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLK 338 (708)
T ss_pred HHHHHHHHHHHHHHHH-hcChHHHHHHH-hcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHH
Confidence 3578899999999999 55555666665 4568899999999983 34556889999998888777755 99999
Q ss_pred HHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCc
Q 001349 399 VIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGK 478 (1094)
Q Consensus 399 ~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~ 478 (1094)
++.++.++. ...++.+|.+| +.+++++.+|++.|.+|.|++.+..++.+ ..+..+|.++ ..+..
T Consensus 339 Ll~s~~~~l-------~~~aLrlL~NL------Sfd~~~R~~mV~~GlIPkLv~LL~d~~~~--~val~iLy~L-S~dd~ 402 (708)
T PF05804_consen 339 LLPSENEDL-------VNVALRLLFNL------SFDPELRSQMVSLGLIPKLVELLKDPNFR--EVALKILYNL-SMDDE 402 (708)
T ss_pred HhcCCCHHH-------HHHHHHHHHHh------CcCHHHHHHHHHCCCcHHHHHHhCCCchH--HHHHHHHHHh-ccCHh
Confidence 998875442 34566777666 77889999999999999999999866544 4455555544 55778
Q ss_pred chhhHhhhcCchhHHHHHHhc-CCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhH
Q 001349 479 CRNSIADKAELAPVMESFMAA-SDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVV 557 (1094)
Q Consensus 479 ~r~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~ 557 (1094)
+|.+++....++.+++++-.+ +.+.....+.++..|..-+|- . +.|-+++++.. |+....+ -+-|+.
T Consensus 403 ~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rn---a---qlm~~g~gL~~---L~~ra~~---~~D~lL 470 (708)
T PF05804_consen 403 ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRN---A---QLMCEGNGLQS---LMKRALK---TRDPLL 470 (708)
T ss_pred hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHH---H---HHHHhcCcHHH---HHHHHHh---cccHHH
Confidence 999999999999999976665 333455568888888666552 2 34445556544 4444433 334666
Q ss_pred HHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcccccccCChhhHHHHHHHHhCCCcccccc
Q 001349 558 AGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQGRFTTSGKSLTRAMLLKRAGVGKSYKNL 636 (1094)
Q Consensus 558 a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~g~~s~~g~~~~~~~l~~~~g~~~~~~~~ 636 (1094)
..++=.+..-..+-+. .| .+.|..|+..+..++.......+-=+|.||.= ++ +.-+-++++.+|-.+...+
T Consensus 471 lKlIRNiS~h~~~~k~-~f-~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~----~~--ld~~~ll~~~~llp~L~~~ 541 (708)
T PF05804_consen 471 LKLIRNISQHDGPLKE-LF-VDFIGDLAKIVSSGDSEEFVVECLGILANLTI----PD--LDWAQLLQEYNLLPWLKDL 541 (708)
T ss_pred HHHHHHHHhcCchHHH-HH-HHHHHHHHHHhhcCCcHHHHHHHHHHHHhccc----CC--cCHHHHHHhCCHHHHHHHH
Confidence 6666555553323333 34 57888899999888866666666666777652 11 1223456777777665443
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.4e-05 Score=84.02 Aligned_cols=223 Identities=14% Similarity=0.185 Sum_probs=140.5
Q ss_pred CCeEEEEecCC--CcceeEEEecccCCCeEEEEEecCCCEEEEEeCC---CcEEEEECCC--CceEEEEecccCc-ccee
Q 001349 832 DGTIKVWTGRG--SILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD---KTARVWSIGN--EEIHCVQVHDIKD-QIQN 903 (1094)
Q Consensus 832 Dg~I~vWd~~t--~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D---gtI~vWdi~~--~~~~~~~~~~~~~-~V~~ 903 (1094)
+.-|++|++.+ ++...+. +-.+.+.++-++|+|+++.|+++-.+ |.|-.|.++. |.+..+......+ +...
T Consensus 15 s~gI~v~~ld~~~g~l~~~~-~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y 93 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQ-LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY 93 (346)
T ss_pred CCceEEEEEeCcccccchhh-hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence 46799998874 3322332 23567788999999999999998664 6677766664 5554444333222 2244
Q ss_pred eeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCC-CceeEEeccceeecCCCC
Q 001349 904 LAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT-GTFATIQTGHRKLLGKAN 982 (1094)
Q Consensus 904 v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~-~~~~~~~~~~~~~~~h~~ 982 (1094)
++ ++++|++++++... -|.|.++-++. |..... .....|..
T Consensus 94 vs-------vd~~g~~vf~AnY~---------------------------~g~v~v~p~~~dG~l~~~----v~~~~h~g 135 (346)
T COG2706 94 VS-------VDEDGRFVFVANYH---------------------------SGSVSVYPLQADGSLQPV----VQVVKHTG 135 (346)
T ss_pred EE-------ECCCCCEEEEEEcc---------------------------CceEEEEEcccCCccccc----eeeeecCC
Confidence 44 78888876555443 34555555543 222111 01111222
Q ss_pred ----------CeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEE----ecCCCCEEEEEEeCC--EEEEEE-cCCeE
Q 001349 983 ----------PVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGS----LPTLSEVRAMVVSSE--LVYLGC-KGGTV 1045 (1094)
Q Consensus 983 ----------~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~----~~~~~~v~~l~~spd--~l~sgs-~dg~I 1045 (1094)
-+.+..+.|++.++++....--.|.+|++..|.+... ++.+...+.|.|+|+ +.++.+ -+++|
T Consensus 136 ~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV 215 (346)
T COG2706 136 SGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTV 215 (346)
T ss_pred CCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEE
Confidence 2788899999999888764433899999998765433 235677899999999 555555 48999
Q ss_pred EEEECCCC-cEEEEec------ccC--CcceEEEEEcCCCCEEEEEeC-CCcEEEEeC
Q 001349 1046 EIWDQKRQ-IRIETLQ------TGT--SGKVQCMALDDNEEFLVIGTS-DGRIQAWGL 1093 (1094)
Q Consensus 1046 ~vwd~~t~-~~~~~l~------~~h--~~~I~~l~~Spdg~~L~sgs~-DG~I~iWdl 1093 (1094)
-+|..... ..+..++ ... ......|.+++||++|.++.. ...|-+|.+
T Consensus 216 ~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V 273 (346)
T COG2706 216 DVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSV 273 (346)
T ss_pred EEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEE
Confidence 99988763 2233322 121 236778899999999988754 224555543
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.6e-05 Score=98.34 Aligned_cols=274 Identities=15% Similarity=0.160 Sum_probs=174.8
Q ss_pred CCCcEEEEEEeCC--EEEEEECCCeEEEE----ecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001349 812 ENGKVLSIACFRD--KIFSGHSDGTIKVW----TGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIG 885 (1094)
Q Consensus 812 h~~~V~~l~fspd--~LaSgs~Dg~I~vW----d~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~ 885 (1094)
..+.|.++.|.++ .++.+..+|.|.+. |..+.....+..+ ...|.+++||||+..|+.++.+|++.+.+-+
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~ 150 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMTRD 150 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEecc
Confidence 4578999999986 78999999999999 7666644455444 5789999999999999999999998775421
Q ss_pred C-------------CceEEE---------Eecc--cC-------ccc------ee--eeecCceEEEeeCCCeEEEEEe-
Q 001349 886 N-------------EEIHCV---------QVHD--IK-------DQI------QN--LAVSNSILCFIPQGAGIKVHLR- 925 (1094)
Q Consensus 886 ~-------------~~~~~~---------~~~~--~~-------~~V------~~--v~~~~~~~~fspdg~~l~~~~~- 925 (1094)
- |..+.+ +.++ .+ .+. .. ..-....++|-.||.++++...
T Consensus 151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEE
Confidence 1 100000 0000 00 000 00 1112235668899999998876
Q ss_pred --C---CeEEEEcCCCC-----------ceEEEEeC-CE-EEEEEc---CCeEEEEECCCCceeEEeccceeecCCCCCe
Q 001349 926 --N---GKTKLLNSSKY-----------PKCLALVQ-GK-VYCGCQ---DGAIQEIDLATGTFATIQTGHRKLLGKANPV 984 (1094)
Q Consensus 926 --~---g~i~l~~~~~~-----------v~~l~~s~-~~-l~sgs~---Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V 984 (1094)
. ..+++|+..+. -.+++|.| |. |++... ...|.+|. ++|-....|. ..+......|
T Consensus 231 ~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~--l~~~~~~~~v 307 (928)
T PF04762_consen 231 PETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFT--LRFDPEEEKV 307 (928)
T ss_pred cCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEe--cCCCCCCcee
Confidence 2 46788986532 23455654 33 444332 24566666 4444333332 1222345689
Q ss_pred EEEEEeCCccEEEEEECCCCEEEEEECCCCe--EEEEec--CCCCEEEEEEeCC---EEEEEEcCCeEEEEEC----CCC
Q 001349 985 HALQVHNGLVYTASTSLDGAAVKMWSTSNYN--MVGSLP--TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQ----KRQ 1053 (1094)
Q Consensus 985 ~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~--~~~~~~--~~~~v~~l~~spd---~l~sgs~dg~I~vwd~----~t~ 1053 (1094)
..+.|+.++..++..-.| .|.+|-..++. ..+.+. ....+..+.|+|. .+.+.+.+|.+..++. ..+
T Consensus 308 ~~l~Wn~ds~iLAv~~~~--~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s 385 (928)
T PF04762_consen 308 IELAWNSDSEILAVWLED--RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRS 385 (928)
T ss_pred eEEEECCCCCEEEEEecC--CceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEec
Confidence 999999999999987755 59999998754 333333 3444566999986 5677766666655432 211
Q ss_pred --------cEEEEec----------------------ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1054 --------IRIETLQ----------------------TGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1054 --------~~~~~l~----------------------~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
..+..+. -.-...|.+++|++++..+++-..||+|.+|..
T Consensus 386 ~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 386 PGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred CCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence 0111110 012457999999999988999999999999874
|
|
| >KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3e-08 Score=113.70 Aligned_cols=79 Identities=29% Similarity=0.508 Sum_probs=64.2
Q ss_pred CCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHhCCCC-----
Q 001349 160 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGG----- 234 (1094)
Q Consensus 160 ~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~~~~~----- 234 (1094)
..+++.||||++.|.+|++++|||+||+.||..++. ....||.|+. ... .+. +|..+.++++.++......
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~-~~~-~n~~l~~~~~~~~~~~~~~~~~~~ 85 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR-NLR-PNVLLANLVERLRQLRLSRPLGSK 85 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-chh-ccC-ccHHHHHHHHHHHhcCCccccccc
Confidence 345899999999999999999999999999999888 4567999996 333 675 9999999999998765432
Q ss_pred --CCCCCCCC
Q 001349 235 --LDLSHSEP 242 (1094)
Q Consensus 235 --~~~~~~~~ 242 (1094)
.|..|.+.
T Consensus 86 ~~~c~~~~~~ 95 (386)
T KOG2177|consen 86 EELCEKHGEE 95 (386)
T ss_pred chhhhhcCCc
Confidence 45555553
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.8e-07 Score=94.89 Aligned_cols=106 Identities=18% Similarity=0.209 Sum_probs=85.9
Q ss_pred ccccCcEEEEeeCCCCeEEEeCC----cceeecccCCCcEEEEEEe---CCEEEEEECCCeEEEEecCCCcceeEEE-ec
Q 001349 781 LAFEMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACF---RDKIFSGHSDGTIKVWTGRGSILHLIQQ-IR 852 (1094)
Q Consensus 781 ~~~d~~~l~s~s~dg~I~vWd~~----~~~~~~~~h~~~V~~l~fs---pd~LaSgs~Dg~I~vWd~~t~~~~~~~~-l~ 852 (1094)
+...+..++++-.+|.+.+-+.+ +..+..+.|.-+.+-..|+ |+.+++|+.||.+..||++... +.+.. .+
T Consensus 129 ~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i~~n~k 207 (339)
T KOG0280|consen 129 ISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TFIWHNSK 207 (339)
T ss_pred eeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-ceeeecce
Confidence 44456778888888998844443 3345788999999999997 4699999999999999999433 44444 66
Q ss_pred ccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCC
Q 001349 853 EHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNE 887 (1094)
Q Consensus 853 ~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~ 887 (1094)
-|+..|.+|.-+| .+.+++||+.|-.|++||.+.-
T Consensus 208 vH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm 243 (339)
T KOG0280|consen 208 VHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM 243 (339)
T ss_pred eeecceEEEecCCCCCceEEEeccccceeeeehhcc
Confidence 7999999999887 6889999999999999999863
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.7e-06 Score=92.40 Aligned_cols=288 Identities=10% Similarity=0.084 Sum_probs=167.2
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCC--EEEEEEC-----------CCeEEEEecCCCc
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHS-----------DGTIKVWTGRGSI 844 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd--~LaSgs~-----------Dg~I~vWd~~t~~ 844 (1094)
+.-++|-|.|++|--..| |.+|--........-..-.|.-+.|||+ +|+|-+. ...++|||+.+|
T Consensus 215 yv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG- 292 (698)
T KOG2314|consen 215 YVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG- 292 (698)
T ss_pred eEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc-
Confidence 566788899999876665 5689765322222222345888999996 8988763 257899999999
Q ss_pred ceeEEEecc--cCCCeE-EEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecc-cCccceeeeecCceEEEeeCCCeE
Q 001349 845 LHLIQQIRE--HTKAVT-GLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHD-IKDQIQNLAVSNSILCFIPQGAGI 920 (1094)
Q Consensus 845 ~~~~~~l~~--H~~~V~-sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~-~~~~V~~v~~~~~~~~fspdg~~l 920 (1094)
...+.+.. ....++ -..||.|++++|--..| +|.|++...- ..+.... ....|.... |+|.+..+
T Consensus 293 -~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf--~lld~Kslki~gIr~Fs-------wsP~~~ll 361 (698)
T KOG2314|consen 293 -LLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSF--MLLDKKSLKISGIRDFS-------WSPTSNLL 361 (698)
T ss_pred -chhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCce--eeecccccCCccccCcc-------cCCCcceE
Confidence 55555544 233343 36899999999988775 5899987763 2222211 123445555 66666665
Q ss_pred EEEEeCC-----eEEEEc-----------------------CCCCceEEEEeC-CEEEEEEcCCeEEEEECCCCceeEEe
Q 001349 921 KVHLRNG-----KTKLLN-----------------------SSKYPKCLALVQ-GKVYCGCQDGAIQEIDLATGTFATIQ 971 (1094)
Q Consensus 921 ~~~~~~g-----~i~l~~-----------------------~~~~v~~l~~s~-~~l~sgs~Dg~I~iwDl~~~~~~~~~ 971 (1094)
+...... .+.+.. .++.-.|+.... .+.-+++.=..+.|+.++......
T Consensus 362 AYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpv-- 439 (698)
T KOG2314|consen 362 AYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPV-- 439 (698)
T ss_pred EEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCc--
Confidence 5433221 111111 111112221110 000011111234455554433221
Q ss_pred ccceeecCCCCCeEEEEEeCCccEEEEEECC--CCEEEEEECCC----CeEEEEecCCCCEEEEEEeCC--EEEE---EE
Q 001349 972 TGHRKLLGKANPVHALQVHNGLVYTASTSLD--GAAVKMWSTSN----YNMVGSLPTLSEVRAMVVSSE--LVYL---GC 1040 (1094)
Q Consensus 972 ~~~~~~~~h~~~V~sl~fs~~~~~las~s~D--g~~I~iwd~~~----~~~~~~~~~~~~v~~l~~spd--~l~s---gs 1040 (1094)
....-...|..++|.|.|..++..+.+ ..++.+|.+.+ .+.+..+.. ...+.+.|+|. +++. +|
T Consensus 440 ----e~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-~~~N~vfwsPkG~fvvva~l~s 514 (698)
T KOG2314|consen 440 ----EVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-KFANTVFWSPKGRFVVVAALVS 514 (698)
T ss_pred ----eeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-cccceEEEcCCCcEEEEEEecc
Confidence 111234578888998887766655432 24788888773 223333332 55778999998 4444 35
Q ss_pred cCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCC
Q 001349 1041 KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDG 1086 (1094)
Q Consensus 1041 ~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG 1086 (1094)
..|.+.++|..-.....+-...|. ..+.+-|.|.|+|++|+++-+
T Consensus 515 ~~g~l~F~D~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 515 RRGDLEFYDTDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred cccceEEEecchhhhhhccCcccc-ccccceECCCCCEEEEeeehh
Confidence 689999999885333222212344 568899999999999998744
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.4e-05 Score=82.08 Aligned_cols=215 Identities=17% Similarity=0.155 Sum_probs=132.8
Q ss_pred CCCeEEEEecCCCcceeEEEecccCCCeEEEE--EecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecC
Q 001349 831 SDGTIKVWTGRGSILHLIQQIREHTKAVTGLA--ILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSN 908 (1094)
Q Consensus 831 ~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~--fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~ 908 (1094)
.+|+|..||..++ +.+....- ........ ..+++..+++++.++.+..||..+|+..-.... ...+...
T Consensus 1 ~~g~l~~~d~~tG--~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~--~~~~~~~---- 71 (238)
T PF13360_consen 1 DDGTLSALDPRTG--KELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL--PGPISGA---- 71 (238)
T ss_dssp -TSEEEEEETTTT--EEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC--SSCGGSG----
T ss_pred CCCEEEEEECCCC--CEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec--cccccce----
Confidence 3789999999999 67776642 11121112 333667788889999999999999863222221 2211111
Q ss_pred ceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEe-ccceeecCCCCCeEEE
Q 001349 909 SILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQ-TGHRKLLGKANPVHAL 987 (1094)
Q Consensus 909 ~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~-~~~~~~~~h~~~V~sl 987 (1094)
....++.+++++.++.+..+|..+|+..... ....... ........
T Consensus 72 --------------------------------~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~-~~~~~~~~ 118 (238)
T PF13360_consen 72 --------------------------------PVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA-GVRSSSSP 118 (238)
T ss_dssp --------------------------------EEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC-STB--SEE
T ss_pred --------------------------------eeecccccccccceeeeEecccCCcceeeeecccccccc-ccccccCc
Confidence 1233456888889999999999999988652 2110000 01112233
Q ss_pred EEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCC-C-----------EEEEEEeCCEEEEEEcCCeEEEEECCCCcE
Q 001349 988 QVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLS-E-----------VRAMVVSSELVYLGCKGGTVEIWDQKRQIR 1055 (1094)
Q Consensus 988 ~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~-~-----------v~~l~~spd~l~sgs~dg~I~vwd~~t~~~ 1055 (1094)
.+. +..++.+..++ .|..+|.++|+.+....... . ...+.+..+.++.++.++.+.-+|..+++.
T Consensus 119 ~~~--~~~~~~~~~~g-~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~ 195 (238)
T PF13360_consen 119 AVD--GDRLYVGTSSG-KLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEK 195 (238)
T ss_dssp EEE--TTEEEEEETCS-EEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEE
T ss_pred eEe--cCEEEEEeccC-cEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCE
Confidence 333 33444444454 99999999999988876321 1 134445556888888888544449999997
Q ss_pred EEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1056 IETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1056 ~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
+.... ...+..+ ...++..|+.++.+|.|..||+.
T Consensus 196 ~w~~~---~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~ 230 (238)
T PF13360_consen 196 LWSKP---ISGIYSL-PSVDGGTLYVTSSDGRLYALDLK 230 (238)
T ss_dssp EEEEC---SS-ECEC-EECCCTEEEEEETTTEEEEEETT
T ss_pred EEEec---CCCccCC-ceeeCCEEEEEeCCCEEEEEECC
Confidence 65432 2223332 34678888888899999999974
|
... |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.1e-07 Score=103.73 Aligned_cols=270 Identities=14% Similarity=0.162 Sum_probs=165.6
Q ss_pred ccccccCcEEEEeeCCCCeEEEeCC---c-ceeecccCCCcEEEEEEeC----CEEEEEECCCeEEEEecCCCcc-eeEE
Q 001349 779 SPLAFEMVKVLSNGHDSSADFWNHR---E-LVHVDSSENGKVLSIACFR----DKIFSGHSDGTIKVWTGRGSIL-HLIQ 849 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~dg~I~vWd~~---~-~~~~~~~h~~~V~~l~fsp----d~LaSgs~Dg~I~vWd~~t~~~-~~~~ 849 (1094)
..+.+.|+-++.++..|.. +-|.. + .........-.|-.+.|++ ++-++......-.+|++....- ..-.
T Consensus 30 ~si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef 108 (1081)
T KOG0309|consen 30 VSINPSGRDIVLASRQGLY-IIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEF 108 (1081)
T ss_pred eeeccccchhhhhhhcCeE-EEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEE
Confidence 3445556667777766644 33443 1 1111111223466777886 3433344444556898764321 3344
Q ss_pred EecccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCe
Q 001349 850 QIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 928 (1094)
Q Consensus 850 ~l~~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~ 928 (1094)
.+.+|+..|+.+.|+| ....+++++-|-.|..||+++.. .++++..
T Consensus 109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~----------~p~ys~~----------------------- 155 (1081)
T KOG0309|consen 109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH----------RPFYSTS----------------------- 155 (1081)
T ss_pred EEecCccceeccccCCCCCcceeeccccccceeeeccCCC----------cceeeee-----------------------
Confidence 5679999999999999 46789999999999999998853 1222211
Q ss_pred EEEEcCCCCceEEEEe--CCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeC-CccEEEEEECCCCE
Q 001349 929 TKLLNSSKYPKCLALV--QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDGAA 1005 (1094)
Q Consensus 929 i~l~~~~~~v~~l~~s--~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~-~~~~las~s~Dg~~ 1005 (1094)
.|+ .....++++ ++.+.+.+..+.|.+||.+.|.... ..+.+|...|+.+.|.. -...+.+.+.|+ +
T Consensus 156 --~w~--s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl-----~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~-t 225 (1081)
T KOG0309|consen 156 --SWR--SAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPL-----CSLKGHVSSVNSIDFNRFKYSEIMSSSNDG-T 225 (1081)
T ss_pred --ccc--ccCceeeecccCcchhhhccCCceEEEeccCCCcce-----EEecccceeeehHHHhhhhhhhhcccCCCC-c
Confidence 000 011122222 3446667778889999999887543 45567888899999863 334556677776 9
Q ss_pred EEEEECCCCe--EEEEecCCCCEEEEEEeCC--EEEE--EEcCCeEE---------EEECCC-CcEEEEecccCCcceEE
Q 001349 1006 VKMWSTSNYN--MVGSLPTLSEVRAMVVSSE--LVYL--GCKGGTVE---------IWDQKR-QIRIETLQTGTSGKVQC 1069 (1094)
Q Consensus 1006 I~iwd~~~~~--~~~~~~~~~~v~~l~~spd--~l~s--gs~dg~I~---------vwd~~t-~~~~~~l~~~h~~~I~~ 1069 (1094)
|+.||..... ..++.+...+|+.-.+-|= ..++ --.++.+. .|++.+ .+++++| .||.+.|..
T Consensus 226 vkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F-~GH~D~V~e 304 (1081)
T KOG0309|consen 226 VKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTF-VGHDDVVLE 304 (1081)
T ss_pred eeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeee-cCcchHHHH
Confidence 9999987533 3333444555554444432 1111 11122333 344433 4688999 699999888
Q ss_pred EEEcCCCC----------EEEEEeCCCcEEEEeC
Q 001349 1070 MALDDNEE----------FLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1070 l~~Spdg~----------~L~sgs~DG~I~iWdl 1093 (1094)
..|-..+. .|+|=+.|.++++|-|
T Consensus 305 FlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI 338 (1081)
T KOG0309|consen 305 FLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPI 338 (1081)
T ss_pred HhhhhcccccCCCCccceeEEEeecCCceEeeec
Confidence 88754332 6999999999999976
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00017 Score=78.66 Aligned_cols=279 Identities=11% Similarity=0.149 Sum_probs=170.4
Q ss_pred CCCeEEEeCCc-----ceeecccCCCcEEEEEEeCC--EEEEEEC---CCeEEEEecCC--CcceeEEEecccCCCeEEE
Q 001349 794 DSSADFWNHRE-----LVHVDSSENGKVLSIACFRD--KIFSGHS---DGTIKVWTGRG--SILHLIQQIREHTKAVTGL 861 (1094)
Q Consensus 794 dg~I~vWd~~~-----~~~~~~~h~~~V~~l~fspd--~LaSgs~---Dg~I~vWd~~t--~~~~~~~~l~~H~~~V~sv 861 (1094)
+.-|.+|++.+ .......+.+.++-++|+|+ .|+++-. +|.|..|.++. |.+..+.....-..+-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 57799999872 12233456788999999997 6777754 47787776664 6544444433333444789
Q ss_pred EEecCCCEEEEEeC-CCcEEEEECCC-CceE-EEEecccCccc---eeeeecCceEEEeeCCCeEEEEEeC-CeEEEEcC
Q 001349 862 AILQSGEMLYSGSL-DKTARVWSIGN-EEIH-CVQVHDIKDQI---QNLAVSNSILCFIPQGAGIKVHLRN-GKTKLLNS 934 (1094)
Q Consensus 862 ~fspdg~~LaSgs~-DgtI~vWdi~~-~~~~-~~~~~~~~~~V---~~v~~~~~~~~fspdg~~l~~~~~~-g~i~l~~~ 934 (1094)
+++++|++++++.. -|.|.++-++. |.+. .+....+.+.. ..-.-......|.|+++++++.+.. ..+.+|+.
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999999999876 47899999865 4422 22222222220 0000001123389999988776544 44555542
Q ss_pred ---------------CCCceEEEEeCCE---EEEEEcCCeEEEEECCCC--ceeEEecc---ceeecCCCCCeEEEEEeC
Q 001349 935 ---------------SKYPKCLALVQGK---VYCGCQDGAIQEIDLATG--TFATIQTG---HRKLLGKANPVHALQVHN 991 (1094)
Q Consensus 935 ---------------~~~v~~l~~s~~~---l~sgs~Dg~I~iwDl~~~--~~~~~~~~---~~~~~~h~~~V~sl~fs~ 991 (1094)
....+-+.|+++. .++.--+++|.+|..... +....... ...+.+ ......+..++
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g-~~~~aaIhis~ 253 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTG-TNWAAAIHISP 253 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCC-CCceeEEEECC
Confidence 4567889998743 345667899999998873 32211110 111222 24566778889
Q ss_pred CccEEEEEECCCCEEEEEECCC--CeE--EEEec-CCCCEEEEEEeCC--EEEEEEc-CCeEEEEEC--CCCcEEEEecc
Q 001349 992 GLVYTASTSLDGAAVKMWSTSN--YNM--VGSLP-TLSEVRAMVVSSE--LVYLGCK-GGTVEIWDQ--KRQIRIETLQT 1061 (1094)
Q Consensus 992 ~~~~las~s~Dg~~I~iwd~~~--~~~--~~~~~-~~~~v~~l~~spd--~l~sgs~-dg~I~vwd~--~t~~~~~~l~~ 1061 (1094)
+|.++..+...-..|.+|.+.. +++ +.... +....+.+.++++ +|+++.. +..|.+|.+ .+|++-.....
T Consensus 254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~ 333 (346)
T COG2706 254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRY 333 (346)
T ss_pred CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccc
Confidence 9999988865545888888763 332 12222 3445778888876 6666654 456888754 56655444333
Q ss_pred cCCcceEEEEEc
Q 001349 1062 GTSGKVQCMALD 1073 (1094)
Q Consensus 1062 ~h~~~I~~l~~S 1073 (1094)
.......|+.|.
T Consensus 334 ~~~p~Pvcv~f~ 345 (346)
T COG2706 334 AVVPEPVCVKFL 345 (346)
T ss_pred cCCCCcEEEEEc
Confidence 344456677664
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.0003 Score=78.40 Aligned_cols=209 Identities=9% Similarity=0.080 Sum_probs=136.8
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCceEEEEec-ccC----c-----ccee---ee-ecCceEEEeeCCCeEEEEEeCCeE
Q 001349 864 LQSGEMLYSGSLDKTARVWSIGNEEIHCVQVH-DIK----D-----QIQN---LA-VSNSILCFIPQGAGIKVHLRNGKT 929 (1094)
Q Consensus 864 spdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~-~~~----~-----~V~~---v~-~~~~~~~fspdg~~l~~~~~~g~i 929 (1094)
+.||+.++- +.-|.|.++|..+..+..+... +.. . +..- .+ ..++.+++..-|+-++...|+|..
T Consensus 275 nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~ 353 (668)
T COG4946 275 NSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYS 353 (668)
T ss_pred CCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCee
Confidence 346776653 3346799999988765554433 111 0 0000 00 122334455555555555556655
Q ss_pred EEEcCCCCceEEEEe--CCEEEEEEcCC-eEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEE
Q 001349 930 KLLNSSKYPKCLALV--QGKVYCGCQDG-AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAV 1006 (1094)
Q Consensus 930 ~l~~~~~~v~~l~~s--~~~l~sgs~Dg-~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I 1006 (1094)
.-..+...|+-..+. +..++.|..|| .+-+||..+++.. .+...-+.|.++..++++.+++.+.... .+
T Consensus 354 iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-------r~e~~lg~I~av~vs~dGK~~vvaNdr~-el 425 (668)
T COG4946 354 IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-------RIEKDLGNIEAVKVSPDGKKVVVANDRF-EL 425 (668)
T ss_pred EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-------EeeCCccceEEEEEcCCCcEEEEEcCce-EE
Confidence 555556666655554 45799999999 8999999998864 3444557899999999999988876543 78
Q ss_pred EEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcC----CeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEE
Q 001349 1007 KMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKG----GTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFL 1079 (1094)
Q Consensus 1007 ~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~d----g~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L 1079 (1094)
.+.|+.++.....-+ ..+-|+.+.|+|+ +++-+--+ ..|+++|+.+++....-. ..+.=.+-+|.|||++|
T Consensus 426 ~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT--~ta~DfsPaFD~d~ryL 503 (668)
T COG4946 426 WVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT--PTAYDFSPAFDPDGRYL 503 (668)
T ss_pred EEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC--CcccccCcccCCCCcEE
Confidence 888999887654333 4567999999999 66665444 479999999988655432 11222456788999987
Q ss_pred EEEe
Q 001349 1080 VIGT 1083 (1094)
Q Consensus 1080 ~sgs 1083 (1094)
.--+
T Consensus 504 YfLs 507 (668)
T COG4946 504 YFLS 507 (668)
T ss_pred EEEe
Confidence 6543
|
|
| >cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.3e-08 Score=74.50 Aligned_cols=44 Identities=34% Similarity=0.873 Sum_probs=38.7
Q ss_pred eccCccccccCcEEcC-CcccccHHhHHHHHHhCCCCCCCCCcCC
Q 001349 165 VCPITTHIFDDPVTLE-TGQTYERRAIQEWIERGNSSCPITRQKL 208 (1094)
Q Consensus 165 ~CpIc~~~~~dPv~~~-cGhtfc~~ci~~~~~~~~~~CP~c~~~~ 208 (1094)
.|+||.+.+.+|+.+. |||.||..|+..|+..+...||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999998888775 9999999999999998666799998753
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.9e-05 Score=80.81 Aligned_cols=225 Identities=14% Similarity=0.153 Sum_probs=131.2
Q ss_pred CCCeEEEeCCcceeeccc----CCCcEEEEEE-eCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCC
Q 001349 794 DSSADFWNHRELVHVDSS----ENGKVLSIAC-FRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE 868 (1094)
Q Consensus 794 dg~I~vWd~~~~~~~~~~----h~~~V~~l~f-spd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~ 868 (1094)
+|+|..||..+....... ..+...+... ..+.+++++.++.+..||..+| +.+..+.. .+.+.... ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG--~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTG--KVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTS--EEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCC--CEEEEeec-ccccccee-eeccc
Confidence 566777776532222111 1223332233 5568888899999999999999 66666553 22221111 22456
Q ss_pred EEEEEeCCCcEEEEECCCCceEEE-EecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCE
Q 001349 869 MLYSGSLDKTARVWSIGNEEIHCV-QVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGK 947 (1094)
Q Consensus 869 ~LaSgs~DgtI~vWdi~~~~~~~~-~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~ 947 (1094)
.++.++.|+.++.+|..+|+.... ..... +...+. ......+.++.
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~--~~~~~~-------------------------------~~~~~~~~~~~ 124 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSS--PPAGVR-------------------------------SSSSPAVDGDR 124 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SS--CTCSTB---------------------------------SEEEEETTE
T ss_pred ccccccceeeeEecccCCcceeeeeccccc--cccccc-------------------------------cccCceEecCE
Confidence 677777888999999999874332 11110 000000 01112233456
Q ss_pred EEEEEcCCeEEEEECCCCceeEEeccceeec-C---CCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCC
Q 001349 948 VYCGCQDGAIQEIDLATGTFATIQTGHRKLL-G---KANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTL 1023 (1094)
Q Consensus 948 l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~-~---h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~ 1023 (1094)
++++..++.|..+|+.+|+.+.......... . ....+..-....++ .+..++.++..+.+ |..+++.+.... .
T Consensus 125 ~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~ 201 (238)
T PF13360_consen 125 LYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-I 201 (238)
T ss_dssp EEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-S
T ss_pred EEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-C
Confidence 8888889999999999999875543211000 0 00111222222334 44444455545666 999999776444 3
Q ss_pred CCEEE-EEEeCCEEEEEEcCCeEEEEECCCCcEEEE
Q 001349 1024 SEVRA-MVVSSELVYLGCKGGTVEIWDQKRQIRIET 1058 (1094)
Q Consensus 1024 ~~v~~-l~~spd~l~sgs~dg~I~vwd~~t~~~~~~ 1058 (1094)
..+.. +..+.+.+++++.++.|..||+.+|+.+..
T Consensus 202 ~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 202 SGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp S-ECECEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred CCccCCceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 33444 555666888888999999999999987653
|
... |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.7e-05 Score=86.78 Aligned_cols=261 Identities=11% Similarity=0.111 Sum_probs=160.9
Q ss_pred CcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEE-----eCC-----CcEEEE
Q 001349 814 GKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSG-----SLD-----KTARVW 882 (1094)
Q Consensus 814 ~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSg-----s~D-----gtI~vW 882 (1094)
.++...+++++ .++.-+.++.++|++..++. .+.+...- .+.++.|+|-|.+|.|= ..| -.+++|
T Consensus 35 ~~~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~--~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSDNQVVKVFEIATLK--VVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CcceeEEEcCCCcEEEEEcCCeEEEEEccCCc--EEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 34667788887 88888889999999998883 44443322 78999999999988652 223 346799
Q ss_pred ECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC-----------CCCceEEEEeCC----E
Q 001349 883 SIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS-----------SKYPKCLALVQG----K 947 (1094)
Q Consensus 883 di~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~-----------~~~v~~l~~s~~----~ 947 (1094)
++.++............. +... |+.|.... ...-.+.+.+++. ...+..+.++++ .
T Consensus 111 ~vet~~~~s~~q~k~Q~~-W~~q-------fs~dEsl~-arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~ 181 (566)
T KOG2315|consen 111 NVETGVQRSQIQKKMQNG-WVPQ-------FSIDESLA-ARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPF 181 (566)
T ss_pred eeccceehhheehhhhcC-cccc-------cccchhhh-hhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCce
Confidence 999853222221111111 2333 55554322 2222334444442 345667777765 2
Q ss_pred EEE-----EEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCc--c-EEEEEECCC--------CEEEEEEC
Q 001349 948 VYC-----GCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL--V-YTASTSLDG--------AAVKMWST 1011 (1094)
Q Consensus 948 l~s-----gs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~--~-~las~s~Dg--------~~I~iwd~ 1011 (1094)
+++ ++.-+.|++|............. +.|.- ..-..+.|++.+ . .+++...|. .++++.++
T Consensus 182 vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~-ksFFk--adkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t 258 (566)
T KOG2315|consen 182 VAVYVPEKKGAPASVRIYKYPEEGQHQPVAN-KSFFK--ADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLAT 258 (566)
T ss_pred EEEEccCCCCCCcEEEEeccccccccchhhh-ccccc--cceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEe
Confidence 332 45556799998763222111100 11110 112234454322 2 222222221 37899998
Q ss_pred CCCeEEEEecCCCCEEEEEEeCC----EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCC--
Q 001349 1012 SNYNMVGSLPTLSEVRAMVVSSE----LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSD-- 1085 (1094)
Q Consensus 1012 ~~~~~~~~~~~~~~v~~l~~spd----~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~D-- 1085 (1094)
....+.-.+...++|.++.|+++ .++-|-.-..+.|||++ +.++..+. .++=+++-|+|.|++|+.+|.+
T Consensus 259 ~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~---egpRN~~~fnp~g~ii~lAGFGNL 334 (566)
T KOG2315|consen 259 QGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP---EGPRNTAFFNPHGNIILLAGFGNL 334 (566)
T ss_pred cCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC---CCCccceEECCCCCEEEEeecCCC
Confidence 86677777788999999999998 35556677899999986 56777774 4456788899999999988764
Q ss_pred -CcEEEEeCC
Q 001349 1086 -GRIQAWGLS 1094 (1094)
Q Consensus 1086 -G~I~iWdls 1094 (1094)
|.+-|||+.
T Consensus 335 ~G~mEvwDv~ 344 (566)
T KOG2315|consen 335 PGDMEVWDVP 344 (566)
T ss_pred CCceEEEecc
Confidence 789999973
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.8e-06 Score=94.51 Aligned_cols=163 Identities=13% Similarity=0.187 Sum_probs=112.1
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCc--eEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC
Q 001349 857 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEE--IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS 934 (1094)
Q Consensus 857 ~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~--~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~ 934 (1094)
..+.+..+++++++|.+..++...+++..... .+..... ++.-.+..+.|..+...+.+..
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-------~v~~~~~ai~~~~~~~sv~v~d---------- 126 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-------CVPKRPTAISFIREDTSVLVAD---------- 126 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-------ecccCcceeeeeeccceEEEEe----------
Confidence 34556677888888888888887777776643 1122211 1111112222433333322211
Q ss_pred CCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCC
Q 001349 935 SKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY 1014 (1094)
Q Consensus 935 ~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~ 1014 (1094)
..+....+.+|....+.. ....||-.-++.++++||..+++++..|+ .|++-....-
T Consensus 127 ---------------kagD~~~~di~s~~~~~~-------~~~lGhvSml~dVavS~D~~~IitaDRDE-kIRvs~ypa~ 183 (390)
T KOG3914|consen 127 ---------------KAGDVYSFDILSADSGRC-------EPILGHVSMLLDVAVSPDDQFIITADRDE-KIRVSRYPAT 183 (390)
T ss_pred ---------------ecCCceeeeeecccccCc-------chhhhhhhhhheeeecCCCCEEEEecCCc-eEEEEecCcc
Confidence 123344556666554443 45678999999999999999999999997 8998887766
Q ss_pred eEEEEec--CCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEe
Q 001349 1015 NMVGSLP--TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETL 1059 (1094)
Q Consensus 1015 ~~~~~~~--~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l 1059 (1094)
..+.+|- |...|..+++-++ .+++||.|++|++||+.+|+.+.++
T Consensus 184 f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 184 FVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred cchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCCccccc
Confidence 6666665 7788999999998 6799999999999999999988766
|
|
| >PHA02926 zinc finger-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=9.7e-08 Score=96.27 Aligned_cols=48 Identities=19% Similarity=0.393 Sum_probs=39.5
Q ss_pred CceeccCccccccC---------cEEcCCcccccHHhHHHHHHhC-----CCCCCCCCcCCC
Q 001349 162 KDFVCPITTHIFDD---------PVTLETGQTYERRAIQEWIERG-----NSSCPITRQKLS 209 (1094)
Q Consensus 162 ~~~~CpIc~~~~~d---------Pv~~~cGhtfc~~ci~~~~~~~-----~~~CP~c~~~~~ 209 (1094)
++..|+||++...+ +++.+|+|+||..||..|.+.. ...||.||..+.
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 37899999998744 4667999999999999999853 235999999875
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.2e-05 Score=84.74 Aligned_cols=266 Identities=17% Similarity=0.160 Sum_probs=179.7
Q ss_pred HHhhhccccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhh
Q 001349 273 ITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTL 352 (1094)
Q Consensus 273 i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i 352 (1094)
+.+|-.++....+..+...+..++...+.-+...+++..|.+++ +..|.+..+|...-+.+.++ .-++.+++++
T Consensus 172 ltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVs-----ll~s~d~dvqyycttaisnI-aVd~~~Rk~L 245 (550)
T KOG4224|consen 172 LTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVS-----LLKSGDLDVQYYCTTAISNI-AVDRRARKIL 245 (550)
T ss_pred hHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhh-----hhccCChhHHHHHHHHhhhh-hhhHHHHHHH
Confidence 34466665555556665555555543333255555566655443 45588999999999999999 5555578888
Q ss_pred ccCCCcH-HHHHHHHhcC----hHHHHHHHHhcCCChHHHHHhh---hhHHHHHHHHhccccccccccCchhhHHHHHHH
Q 001349 353 TRVESDV-ERIVALFKKG----LLEAVVLIDLLRPSTRTLIEMD---MMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQ 424 (1094)
Q Consensus 353 ~~~~~~~-~~L~~lLk~g----~~~Aa~~l~~L~~~~~~~~~~~---~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~ 424 (1094)
...+|.+ +.|+.+...| +..|.-+|.+|+...+-+..|- .+|.||++|++..-.. -.|+++-+-+
T Consensus 246 aqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~pl-------ilasVaCIrn 318 (550)
T KOG4224|consen 246 AQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPL-------ILASVACIRN 318 (550)
T ss_pred HhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhH-------HHHHHHHHhh
Confidence 8888766 9999999988 5677779999988776555544 4499999997643110 1233333332
Q ss_pred HhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhc-cCcchhhHhhhcCchhHHHHHHhcCCch
Q 001349 425 MIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQE-DGKCRNSIADKAELAPVMESFMAASDGE 503 (1094)
Q Consensus 425 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~-~~~~r~~~~~~~~~~~~~~l~~~~~~~~ 503 (1094)
+ +..+-|..-|+..|.+.+||..|+.|+-||-..+|.-.|..+++ ....++.+-..++++.+.+|+..+.-..
T Consensus 319 i------sihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsv 392 (550)
T KOG4224|consen 319 I------SIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSV 392 (550)
T ss_pred c------ccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhH
Confidence 2 56678999999999999999999999999744444444555555 6778888999999999999998876655
Q ss_pred hHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhc
Q 001349 504 RFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDL 566 (1094)
Q Consensus 504 ~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~ 566 (1094)
+...-..+.-|. + +......+-+-|.+++ |...+-+-..|-+-=+|..|..|--
T Consensus 393 qseisac~a~La-l-----~d~~k~~lld~gi~~i---LIp~t~s~s~Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 393 QSEISACIAQLA-L-----NDNDKEALLDSGIIPI---LIPWTGSESEEVRGNAAAALINLSS 446 (550)
T ss_pred HHHHHHHHHHHH-h-----ccccHHHHhhcCCcce---eecccCccchhhcccHHHHHHhhhh
Confidence 554333333221 2 2223333445565555 7777766677777777777777765
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=3e-05 Score=80.58 Aligned_cols=228 Identities=9% Similarity=0.026 Sum_probs=142.5
Q ss_pred EEEEEeC-------CEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCc
Q 001349 817 LSIACFR-------DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEE 888 (1094)
Q Consensus 817 ~~l~fsp-------d~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspd-g~~LaSgs~DgtI~vWdi~~~~ 888 (1094)
..+.|.| ++|+.|+..|...+|...+.. ...+....|...|+-+.=.-| ..-+..++.|.++++.++..+.
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~-~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s 149 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTND-GHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDS 149 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcc-cceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCc
Confidence 3455655 399999999999999998763 233444445554432221112 2346678889999999988764
Q ss_pred eEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCcee
Q 001349 889 IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFA 968 (1094)
Q Consensus 889 ~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~ 968 (1094)
.+...... .-.+.+++ +++|++++ ++.+....|..|.+......
T Consensus 150 ~~~~~h~~-~~~~ns~~-------~snd~~~~----------------------------~~Vgds~~Vf~y~id~~sey 193 (344)
T KOG4532|consen 150 NKFAVHNQ-NLTQNSLH-------YSNDPSWG----------------------------SSVGDSRRVFRYAIDDESEY 193 (344)
T ss_pred ccceeecc-ccceeeeE-------EcCCCceE----------------------------EEecCCCcceEEEeCCccce
Confidence 22211111 11133333 77888764 44445556666666543322
Q ss_pred EEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEE-EEe----c-CCCCEEEEEEeCC----EEEE
Q 001349 969 TIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMV-GSL----P-TLSEVRAMVVSSE----LVYL 1038 (1094)
Q Consensus 969 ~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~-~~~----~-~~~~v~~l~~spd----~l~s 1038 (1094)
... ......++.-.+..|+.....+|++..|| ++.|||++..... ... + |.+.+..+.|++. +++.
T Consensus 194 ~~~---~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg-~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~ 269 (344)
T KOG4532|consen 194 IEN---IYEAPTSDHGFYNSFSENDLQFAVVFQDG-TCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFI 269 (344)
T ss_pred eee---eEecccCCCceeeeeccCcceEEEEecCC-cEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEE
Confidence 110 01122233445778888888999999997 9999999864332 222 1 6788999999964 6666
Q ss_pred EEcCCeEEEEECCCCcEEEEecc------cCC-cceEEEEEcCCCCEEEEEeCC
Q 001349 1039 GCKGGTVEIWDQKRQIRIETLQT------GTS-GKVQCMALDDNEEFLVIGTSD 1085 (1094)
Q Consensus 1039 gs~dg~I~vwd~~t~~~~~~l~~------~h~-~~I~~l~~Spdg~~L~sgs~D 1085 (1094)
.-.-+.+.|.|++++...+.+.. .|. ..|..-.|+.++..+.+.+.+
T Consensus 270 sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 270 SEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred ecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch
Confidence 66678999999999876554421 122 248888888888777666654
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.6e-06 Score=89.67 Aligned_cols=238 Identities=12% Similarity=0.252 Sum_probs=142.6
Q ss_pred CCCcEEEEEEeC--CEEEEEECCCeEEEEecCCCc---ceeEEEecccCC------------CeEEEEEecCC--CEEEE
Q 001349 812 ENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGSI---LHLIQQIREHTK------------AVTGLAILQSG--EMLYS 872 (1094)
Q Consensus 812 h~~~V~~l~fsp--d~LaSgs~Dg~I~vWd~~t~~---~~~~~~l~~H~~------------~V~sv~fspdg--~~LaS 872 (1094)
....|+++-|.. +++++|...|.|.++.-.... .+....+++|.. .|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 456789999976 499999999999999765432 344556777753 47788887653 35666
Q ss_pred EeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEe-CCEEEEE
Q 001349 873 GSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV-QGKVYCG 951 (1094)
Q Consensus 873 gs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s-~~~l~sg 951 (1094)
.+.|++|++|.+....++.+........+. +|-|.-+.+ ...+.+ -..+ .+.++++
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~-----------~~~~g~~~s---~~~l~l---------prls~hd~iiaa 161 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFH-----------SPMGGPLTS---TKELLL---------PRLSEHDEIIAA 161 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccc-----------cccCCCcCC---HHHhhc---------ccccccceEEEe
Confidence 778999999999875443333222211111 111100000 000000 0000 0111111
Q ss_pred EcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCe----EEEEecC-----
Q 001349 952 CQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN----MVGSLPT----- 1022 (1094)
Q Consensus 952 s~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~----~~~~~~~----- 1022 (1094)
. +....-..|..-|+++.|..|...+.++ |+-.|.+|++.-.. .+..-+|
T Consensus 162 ~-------------------p~rvyaNaH~yhiNSiS~NsD~et~lSa--DdLrINLWnl~i~D~sFnIVDiKP~nmeeL 220 (460)
T COG5170 162 K-------------------PCRVYANAHPYHINSISFNSDKETLLSA--DDLRINLWNLEIIDGSFNIVDIKPHNMEEL 220 (460)
T ss_pred c-------------------cceeccccceeEeeeeeecCchheeeec--cceeeeeccccccCCceEEEeccCccHHHH
Confidence 0 0001124577789999999998888876 44589999986422 2221123
Q ss_pred CCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCcEE------EEe---------cccCCcceEEEEEcCCCCEEEEEeC
Q 001349 1023 LSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRI------ETL---------QTGTSGKVQCMALDDNEEFLVIGTS 1084 (1094)
Q Consensus 1023 ~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~~~------~~l---------~~~h~~~I~~l~~Spdg~~L~sgs~ 1084 (1094)
..-|++..|+|. .+.-.+..|.|++-|++...+. ... ..+-...|+.+.|+++|+++++-+.
T Consensus 221 teVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy 300 (460)
T COG5170 221 TEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY 300 (460)
T ss_pred HHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc
Confidence 234788889986 5666777899999998743211 110 0122347899999999999998765
Q ss_pred CCcEEEEeCC
Q 001349 1085 DGRIQAWGLS 1094 (1094)
Q Consensus 1085 DG~I~iWdls 1094 (1094)
-+|+|||++
T Consensus 301 -ltvkiwDvn 309 (460)
T COG5170 301 -LTVKIWDVN 309 (460)
T ss_pred -ceEEEEecc
Confidence 489999974
|
|
| >KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.6e-08 Score=105.51 Aligned_cols=70 Identities=23% Similarity=0.366 Sum_probs=58.1
Q ss_pred CCCCceeccCccccccCcEEc-CCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHH
Q 001349 159 TPPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQ 228 (1094)
Q Consensus 159 ~~~~~~~CpIc~~~~~dPv~~-~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~ 228 (1094)
.+..++.||||+++++..+++ .|+|.||+.||-.-+..++..||.||+.+....-.+++.....+|.+.-
T Consensus 39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~ 109 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIY 109 (381)
T ss_pred HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHh
Confidence 345599999999999999987 7999999999999999989899999999865543237777777777654
|
|
| >smart00184 RING Ring finger | Back alignment and domain information |
|---|
Probab=98.43 E-value=2e-07 Score=69.80 Aligned_cols=39 Identities=44% Similarity=1.005 Sum_probs=36.0
Q ss_pred ccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCC
Q 001349 166 CPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPIT 204 (1094)
Q Consensus 166 CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c 204 (1094)
|+||++...+|+.++|||.||..|+..|+..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998656679987
|
E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s) |
| >PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.6e-08 Score=77.63 Aligned_cols=42 Identities=43% Similarity=0.960 Sum_probs=30.3
Q ss_pred ceeccCccccccCcEE-cCCcccccHHhHHHHHHh-CCCCCCCC
Q 001349 163 DFVCPITTHIFDDPVT-LETGQTYERRAIQEWIER-GNSSCPIT 204 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~-~~cGhtfc~~ci~~~~~~-~~~~CP~c 204 (1094)
.+.|||++..|+|||. ..|||+|++.+|.+|+.. +...||+.
T Consensus 11 ~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~ 54 (57)
T PF11789_consen 11 SLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVA 54 (57)
T ss_dssp -SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCC
T ss_pred ccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCC
Confidence 7999999999999998 499999999999999943 23459983
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.1e-06 Score=88.21 Aligned_cols=236 Identities=16% Similarity=0.250 Sum_probs=143.9
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCCc-------ceeecccCC------------CcEEEEEEeCC----EEEEEECCCe
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHRE-------LVHVDSSEN------------GKVLSIACFRD----KIFSGHSDGT 834 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~~-------~~~~~~~h~------------~~V~~l~fspd----~LaSgs~Dg~ 834 (1094)
..-+...|.|+++|...|.|.+|.-.. ....+++|. ..|..+.|..+ .+...+.|.+
T Consensus 31 aVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdkt 110 (460)
T COG5170 31 AVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKT 110 (460)
T ss_pred EEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCce
Confidence 334445678999999999999997652 223355663 36888889864 6777789999
Q ss_pred EEEEecCCCcceeE----------------------------------------EEe-cccCCCeEEEEEecCCCEEEEE
Q 001349 835 IKVWTGRGSILHLI----------------------------------------QQI-REHTKAVTGLAILQSGEMLYSG 873 (1094)
Q Consensus 835 I~vWd~~t~~~~~~----------------------------------------~~l-~~H~~~V~sv~fspdg~~LaSg 873 (1094)
|++|.+.....+.+ +.+ ..|.--|+++.|+.|...++++
T Consensus 111 iKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSa 190 (460)
T COG5170 111 IKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSA 190 (460)
T ss_pred eeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeec
Confidence 99998753311100 111 3466667888888887777665
Q ss_pred eCCCcEEEEECCCC--ceEEEEecccC-----ccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCC
Q 001349 874 SLDKTARVWSIGNE--EIHCVQVHDIK-----DQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQG 946 (1094)
Q Consensus 874 s~DgtI~vWdi~~~--~~~~~~~~~~~-----~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~ 946 (1094)
+|=.|.+|++.-- ....+...++. .-|++.. |+|... +
T Consensus 191 -DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSae-------Fhp~~c---------------------------n 235 (460)
T COG5170 191 -DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAE-------FHPEMC---------------------------N 235 (460)
T ss_pred -cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcc-------cCHhHc---------------------------c
Confidence 4566888886542 12222222111 1122222 333222 2
Q ss_pred EEEEEEcCCeEEEEECCCCceeE----Ee----cc--ceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCC-Ce
Q 001349 947 KVYCGCQDGAIQEIDLATGTFAT----IQ----TG--HRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN-YN 1015 (1094)
Q Consensus 947 ~l~sgs~Dg~I~iwDl~~~~~~~----~~----~~--~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~-~~ 1015 (1094)
.+.-.+..|.|++-|++....-. .+ .+ ..-+.+-...|..+.|++++.|+++-..- +|+|||++. ..
T Consensus 236 ~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl--tvkiwDvnm~k~ 313 (460)
T COG5170 236 VFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL--TVKIWDVNMAKN 313 (460)
T ss_pred eEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc--eEEEEecccccC
Confidence 35556778899999988433210 00 00 01122334678899999999999987543 899999985 45
Q ss_pred EEEEec-C------------CCCE---EEEEEeCC--EEEEEEcCCeEEEEEC
Q 001349 1016 MVGSLP-T------------LSEV---RAMVVSSE--LVYLGCKGGTVEIWDQ 1050 (1094)
Q Consensus 1016 ~~~~~~-~------------~~~v---~~l~~spd--~l~sgs~dg~I~vwd~ 1050 (1094)
++.+++ | ...| ..+.||+| .+.+|+..+..-+|-+
T Consensus 314 pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 314 PIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred CceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 677764 2 1222 34677776 7888888777777753
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00025 Score=83.47 Aligned_cols=256 Identities=13% Similarity=0.103 Sum_probs=144.9
Q ss_pred cCcEEEEeeCCCCeEEEeCCcceeecccC-CCcE-EEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEE-
Q 001349 784 EMVKVLSNGHDSSADFWNHRELVHVDSSE-NGKV-LSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTG- 860 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~~~~~~~~~h-~~~V-~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~s- 860 (1094)
++..++.++.+|.+.-+|..+........ .+.+ .+.....+.++.++.+|.+..+|..+| +.+..+......+..
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG--~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDG--AVKWTVNLDVPSLTLR 196 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCC--CEeeeecCCCCccccc
Confidence 46677788889999989876332222111 1222 222334568888899999999999999 666665432111100
Q ss_pred EEEec--CCCEEEEEeCCCcEEEEECCCCceEEEEecccC---cc---ceeee----ecCc-eEEEeeCCCeEEEEEeCC
Q 001349 861 LAILQ--SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIK---DQ---IQNLA----VSNS-ILCFIPQGAGIKVHLRNG 927 (1094)
Q Consensus 861 v~fsp--dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~---~~---V~~v~----~~~~-~~~fspdg~~l~~~~~~g 927 (1094)
..-+| .+..++.++.+|.+..+|..+|+..-....... .. ...+. +... ....+.+|...+....+|
T Consensus 197 ~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG 276 (394)
T PRK11138 197 GESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG 276 (394)
T ss_pred CCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC
Confidence 00112 234577788889999999988863221111000 00 00000 0111 111233343333333333
Q ss_pred eEEEEcCC-CCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEE
Q 001349 928 KTKLLNSS-KYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAV 1006 (1094)
Q Consensus 928 ~i~l~~~~-~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I 1006 (1094)
.. +|... .....+...++.+++++.+|.+..+|..+|+.+..... . .+ ....+.....+ ++..++.+| .+
T Consensus 277 ~~-~W~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~---~-~~-~~~~sp~v~~g--~l~v~~~~G-~l 347 (394)
T PRK11138 277 QI-VWKREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSD---L-LH-RLLTAPVLYNG--YLVVGDSEG-YL 347 (394)
T ss_pred CE-EEeecCCCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccc---c-CC-CcccCCEEECC--EEEEEeCCC-EE
Confidence 32 34321 12223456678999999999999999999987643221 0 11 11222223333 334455676 99
Q ss_pred EEEECCCCeEEEEecC-CC-CEEEEEEeCCEEEEEEcCCeEEEEEC
Q 001349 1007 KMWSTSNYNMVGSLPT-LS-EVRAMVVSSELVYLGCKGGTVEIWDQ 1050 (1094)
Q Consensus 1007 ~iwd~~~~~~~~~~~~-~~-~v~~l~~spd~l~sgs~dg~I~vwd~ 1050 (1094)
...|..+|+.+..... .. ......+..+.+++++.||.|+.++.
T Consensus 348 ~~ld~~tG~~~~~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 348 HWINREDGRFVAQQKVDSSGFLSEPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEECCCCCEEEEEEcCCCcceeCCEEECCEEEEEeCCceEEEEeC
Confidence 9999999998887763 23 23344556679999999999988764
|
|
| >PF14634 zf-RING_5: zinc-RING finger domain | Back alignment and domain information |
|---|
Probab=98.35 E-value=3e-07 Score=70.90 Aligned_cols=41 Identities=20% Similarity=0.470 Sum_probs=34.7
Q ss_pred eccCccccc---cCcEEcCCcccccHHhHHHHHHhCCCCCCCCCc
Q 001349 165 VCPITTHIF---DDPVTLETGQTYERRAIQEWIERGNSSCPITRQ 206 (1094)
Q Consensus 165 ~CpIc~~~~---~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~ 206 (1094)
.|+||.+.+ ..|++++|||+||..|+.... .....||.|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 399999999 357889999999999999987 33557999985
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.7e-05 Score=79.19 Aligned_cols=194 Identities=13% Similarity=0.023 Sum_probs=124.9
Q ss_pred CcEEEEeeCCCCeEEEeCCc---ceeecccCCCcEEEEE---EeCCEEEEEECCCeEEEEecCCCcceeEEEecccCC--
Q 001349 785 MVKVLSNGHDSSADFWNHRE---LVHVDSSENGKVLSIA---CFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTK-- 856 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~~---~~~~~~~h~~~V~~l~---fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~-- 856 (1094)
..+++.||..|...+|...+ ..+....|...|+-+. -+.-.+..++.|.++++.++..+..+.. -|..
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~----~h~~~~ 159 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA----VHNQNL 159 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccce----eecccc
Confidence 44899999999999999862 2333334554443222 1222677788899999999887622222 2333
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCC
Q 001349 857 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSK 936 (1094)
Q Consensus 857 ~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~ 936 (1094)
.+.++++++|++++++.++...|..|.++.......... ..|. ..
T Consensus 160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~-----------------~a~t------------------~D 204 (344)
T KOG4532|consen 160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIY-----------------EAPT------------------SD 204 (344)
T ss_pred ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeE-----------------eccc------------------CC
Confidence 388999999999999999999999999887532222111 0000 11
Q ss_pred CceEEEEe--CCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCcc---EEEEEECCCCEEEEEEC
Q 001349 937 YPKCLALV--QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLV---YTASTSLDGAAVKMWST 1011 (1094)
Q Consensus 937 ~v~~l~~s--~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~---~las~s~Dg~~I~iwd~ 1011 (1094)
.-.+..|+ +..+++++.||++.+||++.......... .+-..|.+.+..+.|++.+. ++.+- .-+.+.+.|+
T Consensus 205 ~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s-strp~hnGa~R~c~Fsl~g~lDLLf~sE--hfs~~hv~D~ 281 (344)
T KOG4532|consen 205 HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS-STRPHHNGAFRVCRFSLYGLLDLLFISE--HFSRVHVVDT 281 (344)
T ss_pred CceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc-ccCCCCCCceEEEEecCCCcceEEEEec--CcceEEEEEc
Confidence 11222333 23589999999999999997654432221 23345889999999996443 33332 2248999999
Q ss_pred CCCeEEEEe
Q 001349 1012 SNYNMVGSL 1020 (1094)
Q Consensus 1012 ~~~~~~~~~ 1020 (1094)
+++.-.+.+
T Consensus 282 R~~~~~q~I 290 (344)
T KOG4532|consen 282 RNYVNHQVI 290 (344)
T ss_pred ccCceeeEE
Confidence 998765544
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00016 Score=84.99 Aligned_cols=203 Identities=8% Similarity=-0.067 Sum_probs=120.6
Q ss_pred CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCE-EEEEeC---CCcEEEEECCCCceEEEEecccCccceeeeecC
Q 001349 833 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEM-LYSGSL---DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSN 908 (1094)
Q Consensus 833 g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~-LaSgs~---DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~ 908 (1094)
..|.+=|..... .+.+... +.+..-.|+|||+. ++..+. +..|.++|+.+++.+.+.. ..+......
T Consensus 169 ~~l~~~d~dg~~---~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~--~~g~~~~~~--- 239 (419)
T PRK04043 169 SNIVLADYTLTY---QKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS--SQGMLVVSD--- 239 (419)
T ss_pred ceEEEECCCCCc---eeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec--CCCcEEeeE---
Confidence 355555665542 2223223 37788999999984 654444 3568999999887555443 233333333
Q ss_pred ceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEE
Q 001349 909 SILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQ 988 (1094)
Q Consensus 909 ~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~ 988 (1094)
|+|||+.++..... ..+..|.++|+.++.... +..+........
T Consensus 240 ----~SPDG~~la~~~~~-------------------------~g~~~Iy~~dl~~g~~~~-------LT~~~~~d~~p~ 283 (419)
T PRK04043 240 ----VSKDGSKLLLTMAP-------------------------KGQPDIYLYDTNTKTLTQ-------ITNYPGIDVNGN 283 (419)
T ss_pred ----ECCCCCEEEEEEcc-------------------------CCCcEEEEEECCCCcEEE-------cccCCCccCccE
Confidence 89999876543211 124578888988776532 222222233457
Q ss_pred EeCCccEEEEEECCC--CEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEE-cC--------CeEEEEECCCCcE
Q 001349 989 VHNGLVYTASTSLDG--AAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGC-KG--------GTVEIWDQKRQIR 1055 (1094)
Q Consensus 989 fs~~~~~las~s~Dg--~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs-~d--------g~I~vwd~~t~~~ 1055 (1094)
|+||+..++-.+..+ ..|.++|+.+++..+....... ...|+|| +++..+ .+ ..|.+.|+.++..
T Consensus 284 ~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 284 FVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI 361 (419)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe
Confidence 999997766665332 2688888887766443322222 2489998 444433 22 3788889988864
Q ss_pred EEEecccCCcceEEEEEcCCCCEEEEEeCC
Q 001349 1056 IETLQTGTSGKVQCMALDDNEEFLVIGTSD 1085 (1094)
Q Consensus 1056 ~~~l~~~h~~~I~~l~~Spdg~~L~sgs~D 1085 (1094)
..+..+ +......|+|||+.|+..+.+
T Consensus 362 -~~LT~~--~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 362 -RRLTAN--GVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred -EECCCC--CCcCCeEECCCCCEEEEEEcc
Confidence 344222 233468899999987765543
|
|
| >TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.6e-07 Score=97.35 Aligned_cols=101 Identities=16% Similarity=0.194 Sum_probs=64.5
Q ss_pred ceeccCcccc-ccCcE----EcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCC----CCChhHHHHHHHHHHHHhCCC
Q 001349 163 DFVCPITTHI-FDDPV----TLETGQTYERRAIQEWIERGNSSCPITRQKLSSTK----LPKTNYVLKRLIASWQEQNPG 233 (1094)
Q Consensus 163 ~~~CpIc~~~-~~dPv----~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~----~~~pN~~l~~~i~~~~~~~~~ 233 (1094)
+..||||..- ...|- +.+|||+||..|+...|..+...||.|+..+.... .+ ++..+.+-|+--+.-...
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F-~D~~vekEV~iRkrv~~i 81 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLF-EDPTVEKEVDIRKRVLKI 81 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcccccc-ccHHHHHHHHHHHHHHHH
Confidence 6789999983 33442 23799999999999988877778999999988766 44 676666555543321100
Q ss_pred CCCCCCCCCccccccCCCCCCccccchhhhhHHHHHHHHHHhhhcc
Q 001349 234 GLDLSHSEPMSKSIVPSNSPNSVISQATIDGTITELKHAITSLCMS 279 (1094)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~~i~~L~~s 279 (1094)
.. .....|. +-..-+..+++++.+|-.|...
T Consensus 82 ~N-----k~e~dF~----------~l~~yNdYLE~vEdii~nL~~~ 112 (309)
T TIGR00570 82 YN-----KREEDFP----------SLREYNDYLEEVEDIVYNLTNN 112 (309)
T ss_pred Hc-----cchhccC----------CHHHHHHHHHHHHHHHHHhhcC
Confidence 00 0000011 1234556678888888887654
|
All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.5e-05 Score=94.23 Aligned_cols=181 Identities=17% Similarity=0.110 Sum_probs=126.5
Q ss_pred CCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEE
Q 001349 813 NGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCV 892 (1094)
Q Consensus 813 ~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~ 892 (1094)
.+.++|++++...++-|+-+|.|++.+.... . .+...|... ..+|.+++|||.||+|.|-.+.+++. .
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~---~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~--~ 106 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGN---P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE--I 106 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCCc---c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc--c
Confidence 5678899999999999999999999998765 2 444456554 55899999999999999999888743 3
Q ss_pred EecccCccceeeeecCceEEEeeC-CCeEEEEEeCCeEEE--------------EcCCCCceEEEEeCCEEEEEEcCCeE
Q 001349 893 QVHDIKDQIQNLAVSNSILCFIPQ-GAGIKVHLRNGKTKL--------------LNSSKYPKCLALVQGKVYCGCQDGAI 957 (1094)
Q Consensus 893 ~~~~~~~~V~~v~~~~~~~~fspd-g~~l~~~~~~g~i~l--------------~~~~~~v~~l~~s~~~l~sgs~Dg~I 957 (1094)
...+...++.++++.|+ |+.. .+.+++++..| +.+ -...+.|.++.|.++.|+-++.+| |
T Consensus 107 ~~~df~rpiksial~Pd---~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~lIAWand~G-v 181 (846)
T KOG2066|consen 107 TQYDFKRPIKSIALHPD---FSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNLIAWANDDG-V 181 (846)
T ss_pred eeEecCCcceeEEeccc---hhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCcEEEEecCCC-c
Confidence 33445778888884443 1111 33444444444 322 234678999999998888877665 7
Q ss_pred EEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCC
Q 001349 958 QEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN 1013 (1094)
Q Consensus 958 ~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~ 1013 (1094)
++||+.+++.+...+..........--..+.|.++..++++.+ .+|+|..++.
T Consensus 182 ~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~---d~v~i~~I~~ 234 (846)
T KOG2066|consen 182 KVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWG---DSVKICSIKK 234 (846)
T ss_pred EEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecC---CeEEEEEEec
Confidence 9999999887755443332222222345678888887777663 3899998873
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.29 E-value=7.2e-06 Score=90.57 Aligned_cols=243 Identities=17% Similarity=0.188 Sum_probs=163.9
Q ss_pred cCCCcEEEEEEeC-CEEEEEECCCeEEEEecCC-CcceeEEEecccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCC
Q 001349 811 SENGKVLSIACFR-DKIFSGHSDGTIKVWTGRG-SILHLIQQIREHTKAVTGLAILQSGEMLYSGSL-DKTARVWSIGNE 887 (1094)
Q Consensus 811 ~h~~~V~~l~fsp-d~LaSgs~Dg~I~vWd~~t-~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~-DgtI~vWdi~~~ 887 (1094)
.|.+.|+.+.... +++.+++.||.++.|.-.. .....+..+..|-+.|.+++.+.+|..+.|++. |..++++|+.+-
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 5888888887776 5999999999999997654 333566777889999999999999999999888 999999998774
Q ss_pred ceE-EEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEE-EEEEcCCeEEEEECCCC
Q 001349 888 EIH-CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKV-YCGCQDGAIQEIDLATG 965 (1094)
Q Consensus 888 ~~~-~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l-~sgs~Dg~I~iwDl~~~ 965 (1094)
... .+.....++.+.. +...|.. +. .+ ++.-.+|.|.++|-..+
T Consensus 87 DminmiKL~~lPg~a~w---------v~skGd~------------------~s-------~IAVs~~~sg~i~VvD~~~d 132 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEW---------VTSKGDK------------------IS-------LIAVSLFKSGKIFVVDGFGD 132 (558)
T ss_pred chhhhcccccCCCceEE---------ecCCCCe------------------ee-------eEEeecccCCCcEEECCcCC
Confidence 211 1111111111110 1111110 00 23 33455788999998766
Q ss_pred ceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCC------CeEEEEec----------CCCCEEEE
Q 001349 966 TFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN------YNMVGSLP----------TLSEVRAM 1029 (1094)
Q Consensus 966 ~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~------~~~~~~~~----------~~~~v~~l 1029 (1094)
.+... ..-.-|..+|..+.+.+-+...++....| .|.-|.... ......++ ......++
T Consensus 133 ~~q~~----~fkklH~sPV~~i~y~qa~Ds~vSiD~~g-mVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~ 207 (558)
T KOG0882|consen 133 FCQDG----YFKKLHFSPVKKIRYNQAGDSAVSIDISG-MVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSF 207 (558)
T ss_pred cCccc----eecccccCceEEEEeeccccceeeccccc-eeEeecCCCcccCccccccccccccchhhcccccccCccce
Confidence 53321 22344889999999999888888876665 999998862 11222222 24567899
Q ss_pred EEeCC--EEEEEEcCCeEEEEECCCCcEEEEecc-------------------------------cCC-cceEEEEEcCC
Q 001349 1030 VVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQT-------------------------------GTS-GKVQCMALDDN 1075 (1094)
Q Consensus 1030 ~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~-------------------------------~h~-~~I~~l~~Spd 1075 (1094)
.|+|+ .+.+-+.|..|++++..+|+.++.+.. .|. ..-+.+.|...
T Consensus 208 Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes 287 (558)
T KOG0882|consen 208 EFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDES 287 (558)
T ss_pred EEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCC
Confidence 99998 677778999999999999876654420 011 13456778888
Q ss_pred CCEEEEEeCCCcEEEEeC
Q 001349 1076 EEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1076 g~~L~sgs~DG~I~iWdl 1093 (1094)
|++|+-|+-=| |++.++
T Consensus 288 ~~flly~t~~g-ikvin~ 304 (558)
T KOG0882|consen 288 GNFLLYGTILG-IKVINL 304 (558)
T ss_pred CCEEEeeccee-EEEEEe
Confidence 89988887654 455543
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.2e-05 Score=83.24 Aligned_cols=238 Identities=14% Similarity=0.119 Sum_probs=136.1
Q ss_pred EEEEEEeCC-EEEEEECCCeEEEEecCCC----------cceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 001349 816 VLSIACFRD-KIFSGHSDGTIKVWTGRGS----------ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSI 884 (1094)
Q Consensus 816 V~~l~fspd-~LaSgs~Dg~I~vWd~~t~----------~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi 884 (1094)
|+.+.++.+ .|+++..++.+......++ .....+.+..|+++-.+-+.+-.++.++++..||.+.+.+.
T Consensus 39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~ 118 (319)
T KOG4714|consen 39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST 118 (319)
T ss_pred EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence 667777765 7888888777666544333 11233444445444333333445678999999999999988
Q ss_pred CCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCC
Q 001349 885 GNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT 964 (1094)
Q Consensus 885 ~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~ 964 (1094)
+.- .. ..++.++..+. ....++...++.+... .+.+--.-+..+.|+++.
T Consensus 119 ~~~-~~----~~~~i~~~~~~--~as~~~~~~~~~i~s~-----------------------~~g~~n~~d~~~a~~~~p 168 (319)
T KOG4714|consen 119 DKD-LA----LMSRIPSIHSG--SASRKICRHGNSILSG-----------------------GCGNWNAQDNFYANTLDP 168 (319)
T ss_pred hHH-Hh----hhhhccccccc--ccccceeecccEEecC-----------------------CcceEeeccceeeecccc
Confidence 751 11 11111111111 1111122222221110 011111123345566554
Q ss_pred CceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec--CCCCEEEEEEeCC---EEEEE
Q 001349 965 GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP--TLSEVRAMVVSSE---LVYLG 1039 (1094)
Q Consensus 965 ~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~--~~~~v~~l~~spd---~l~sg 1039 (1094)
.+..... . -....|++++-+|....++.++.+++.+-+||.++.....++- |...++.+-|+|. .++++
T Consensus 169 ~~t~~~~----~--~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~ 242 (319)
T KOG4714|consen 169 IKTLIPS----K--KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTC 242 (319)
T ss_pred ccccccc----c--cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEe
Confidence 3322110 0 1123488999998777666666666799999999875444332 7899999999986 89999
Q ss_pred EcCCeEEEEECCCCcEEE------------------E------ecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1040 CKGGTVEIWDQKRQIRIE------------------T------LQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1040 s~dg~I~vwd~~t~~~~~------------------~------l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
++||.+.-||..+. .+. . +.......|+++.. -|..|++|++-+.|++.+
T Consensus 243 sedGslw~wdas~~-~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV--~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 243 SEDGSLWHWDASTT-FLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDV--LGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cCCCcEEEEcCCCc-eEEecCccccccccccCCcccceEeeeccccccceeeeeeec--cCceEEeccccceEEEec
Confidence 99999999997641 111 0 00011113444333 578999999999998875
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00036 Score=74.17 Aligned_cols=227 Identities=11% Similarity=0.078 Sum_probs=117.0
Q ss_pred EEEEEECCCeEEEEecCCCcceeEEEec---ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccc
Q 001349 825 KIFSGHSDGTIKVWTGRGSILHLIQQIR---EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQI 901 (1094)
Q Consensus 825 ~LaSgs~Dg~I~vWd~~t~~~~~~~~l~---~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V 901 (1094)
.++..-.|..|-|-..++.-...+...+ .....=..++||||+.+||.+...|+|+++|+.+..+..+... ....
T Consensus 10 k~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~--~~~~ 87 (282)
T PF15492_consen 10 KLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPA--MSFP 87 (282)
T ss_pred cEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcc--cccC
Confidence 4444455566666554432111222222 1222345799999999999999999999999987543222211 0000
Q ss_pred eeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC--------CEEEEEEcCCeEEEEECCCCceeE-Eec
Q 001349 902 QNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ--------GKVYCGCQDGAIQEIDLATGTFAT-IQT 972 (1094)
Q Consensus 902 ~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~--------~~l~sgs~Dg~I~iwDl~~~~~~~-~~~ 972 (1094)
.. ....|..+.|-+ ..+++-..+|.++-|-+..++... ...
T Consensus 88 ~d------------------------------~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~ 137 (282)
T PF15492_consen 88 GD------------------------------LSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQEN 137 (282)
T ss_pred Cc------------------------------cccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceee
Confidence 00 111122222211 136666777777777654322110 000
Q ss_pred cceeecC-CCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEE---eCCEE-EEEEcCCe---
Q 001349 973 GHRKLLG-KANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVV---SSELV-YLGCKGGT--- 1044 (1094)
Q Consensus 973 ~~~~~~~-h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~---spd~l-~sgs~dg~--- 1044 (1094)
....+.. +...|+++.++|...+++.++.....-..+. .....+++-.+ +|.+. +....|+.
T Consensus 138 hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~----------a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~ 207 (282)
T PF15492_consen 138 HSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK----------ASSCGLTAWRILSDSPYYKQVTSSEDDITAS 207 (282)
T ss_pred EEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc----------ccccCceEEEEcCCCCcEEEccccCcccccc
Confidence 0122323 3568999999998777666644321100000 00111111111 22222 22222221
Q ss_pred ---EEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1045 ---VEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1045 ---I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
-.+|.+-+.+... .+......|..|..||||+.|++...+|.|.+|++.
T Consensus 208 ~~~~~~~~~~~~~~fs-~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 208 SKRRGLLRIPSFKFFS-RQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIP 259 (282)
T ss_pred ccccceeeccceeeee-ccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence 2344433322221 222345689999999999999999999999999973
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00026 Score=79.93 Aligned_cols=258 Identities=13% Similarity=0.122 Sum_probs=158.9
Q ss_pred CCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCC------------
Q 001349 812 ENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDK------------ 877 (1094)
Q Consensus 812 h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~Dg------------ 877 (1094)
..-++..++|||. +|++... ..|.+|+..... .+..+. | ..|..+.|+|.+++|+|=+..+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~--~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~ 105 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHA-AGVECWGGPSKA--KLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFT 105 (561)
T ss_pred cCcchhheeecCcchheehhhc-cceEEccccchh--heeeee-c-CCceecccCcccceeeeeccCCccChhhccCCcc
Confidence 6678899999996 5665554 458999988773 333332 3 4689999999999999876543
Q ss_pred ---cEEEEECCCCceEEEEeccc-Ccc--ceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC-------------CCCc
Q 001349 878 ---TARVWSIGNEEIHCVQVHDI-KDQ--IQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS-------------SKYP 938 (1094)
Q Consensus 878 ---tI~vWdi~~~~~~~~~~~~~-~~~--V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~-------------~~~v 938 (1094)
.+.+||+.+|.+ +..+.. ..+ .+ ....|+.+.++++-. -...+.++.. ...+
T Consensus 106 ~~n~~~vwd~~sg~i--v~sf~~~~q~~~~W------p~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi 176 (561)
T COG5354 106 SKNNVFVWDIASGMI--VFSFNGISQPYLGW------PVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGI 176 (561)
T ss_pred ccCceeEEeccCcee--EeeccccCCccccc------ceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhccccce
Confidence 489999999852 222211 111 11 123377776655443 2334444441 1345
Q ss_pred eEEEEeCC----EEEE-----EEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEEC--------
Q 001349 939 KCLALVQG----KVYC-----GCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSL-------- 1001 (1094)
Q Consensus 939 ~~l~~s~~----~l~s-----gs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~-------- 1001 (1094)
....++|. .++. +..++++++|.+..+..+... .+.. ..=..+.|++.+.++..--.
T Consensus 177 ~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk----~lfk--~~~~qLkW~~~g~~ll~l~~t~~ksnKs 250 (561)
T COG5354 177 LDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK----NLFK--VSGVQLKWQVLGKYLLVLVMTHTKSNKS 250 (561)
T ss_pred eeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeee----eeEe--ecccEEEEecCCceEEEEEEEeeecccc
Confidence 55666654 1222 466778888888866655321 1110 11124556666555443210
Q ss_pred --CCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC----EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCC
Q 001349 1002 --DGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE----LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDN 1075 (1094)
Q Consensus 1002 --Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd----~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spd 1075 (1094)
....+.|+++....+.......++|..++|.|+ .+++|..+-.+.++|++.. ....+. .+.=+.+.|||.
T Consensus 251 yfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P---e~~rNT~~fsp~ 326 (561)
T COG5354 251 YFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP---EQKRNTIFFSPH 326 (561)
T ss_pred eeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecC---CcccccccccCc
Confidence 013678888874443333345788999999887 4556678899999999876 444442 233456779999
Q ss_pred CCEEEEEeCC---CcEEEEeC
Q 001349 1076 EEFLVIGTSD---GRIQAWGL 1093 (1094)
Q Consensus 1076 g~~L~sgs~D---G~I~iWdl 1093 (1094)
+++++.++-| |.|-+||.
T Consensus 327 ~r~il~agF~nl~gni~i~~~ 347 (561)
T COG5354 327 ERYILFAGFDNLQGNIEIFDP 347 (561)
T ss_pred ccEEEEecCCccccceEEecc
Confidence 9998887765 56888874
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.9e-06 Score=63.66 Aligned_cols=38 Identities=34% Similarity=0.622 Sum_probs=36.6
Q ss_pred eeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 001349 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWS 883 (1094)
Q Consensus 846 ~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWd 883 (1094)
+++.++.+|.+.|++|+|+|++.+|+||+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.4e-06 Score=96.84 Aligned_cols=226 Identities=12% Similarity=0.163 Sum_probs=137.1
Q ss_pred cCcEEEEeeCCCCeEEEeCC-----cceeecccCCCcEEEEEEeC---CEEEEEECCCeEEEEecCCCcceeEEEecccC
Q 001349 784 EMVKVLSNGHDSSADFWNHR-----ELVHVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWTGRGSILHLIQQIREHT 855 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~-----~~~~~~~~h~~~V~~l~fsp---d~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~ 855 (1094)
-+..+++.+...+| +|++. ....++.+|...|+.+.|+| +.+++++.|-.|..||+.... .++..+..-.
T Consensus 81 ~~~wiVsts~qkai-iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~-~p~ys~~~w~ 158 (1081)
T KOG0309|consen 81 KPYWIVSTSNQKAI-IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH-RPFYSTSSWR 158 (1081)
T ss_pred CceeEEecCcchhh-hhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC-cceeeeeccc
Confidence 35567777776666 79875 35567889999999999987 599999999999999998764 3455554445
Q ss_pred CCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC
Q 001349 856 KAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS 934 (1094)
Q Consensus 856 ~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~ 934 (1094)
..-..|+|+. ++..+| .+..+.|++||.+.|.........+...|+.+. |..
T Consensus 159 s~asqVkwnyk~p~vla-sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~-------fnr------------------- 211 (1081)
T KOG0309|consen 159 SAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSID-------FNR------------------- 211 (1081)
T ss_pred ccCceeeecccCcchhh-hccCCceEEEeccCCCcceEEecccceeeehHH-------Hhh-------------------
Confidence 5667899997 555555 455567999999987522222222222222222 100
Q ss_pred CCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeC-----------CccEEEEEECCC
Q 001349 935 SKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN-----------GLVYTASTSLDG 1003 (1094)
Q Consensus 935 ~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~-----------~~~~las~s~Dg 1003 (1094)
+..+.+.+.+.||+|+.||.......... ......+|.--.+-| ++..+--.-.++
T Consensus 212 --------~~~s~~~s~~~d~tvkfw~y~kSt~e~~~-----~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n 278 (1081)
T KOG0309|consen 212 --------FKYSEIMSSSNDGTVKFWDYSKSTTESKR-----TVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCEN 278 (1081)
T ss_pred --------hhhhhhcccCCCCceeeecccccccccce-----eccccCcceeccccccCceeEeccccCCeeeeeccccc
Confidence 01235888899999999998754432111 011112232222222 222111111111
Q ss_pred CEEEEEECCC-CeEEEEec-CCCCEEEEEEe--------C---C-EEEEEEcCCeEEEEECCC
Q 001349 1004 AAVKMWSTSN-YNMVGSLP-TLSEVRAMVVS--------S---E-LVYLGCKGGTVEIWDQKR 1052 (1094)
Q Consensus 1004 ~~I~iwd~~~-~~~~~~~~-~~~~v~~l~~s--------p---d-~l~sgs~dg~I~vwd~~t 1052 (1094)
.-..|+..+ .+++.+|. |.+.|..+.|- - | .+++-|.|.++++|-+.+
T Consensus 279 -~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 279 -SDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred -hhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 334555543 45778887 44555444442 1 2 699999999999998764
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.8e-06 Score=89.66 Aligned_cols=92 Identities=17% Similarity=0.274 Sum_probs=78.8
Q ss_pred CCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEE
Q 001349 1002 DGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFL 1079 (1094)
Q Consensus 1002 Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L 1079 (1094)
|...+.+|....+.+.-.+-|-+.++.++|+|| +++++..|..|+|-.......+..|--||...|..++.-+ +..|
T Consensus 130 D~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~L 208 (390)
T KOG3914|consen 130 DVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLL 208 (390)
T ss_pred CceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-Ccee
Confidence 335777888777777777778899999999999 8999999999999888877777787779999999999975 4569
Q ss_pred EEEeCCCcEEEEeCC
Q 001349 1080 VIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1080 ~sgs~DG~I~iWdls 1094 (1094)
++||.|++|++||+.
T Consensus 209 lS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 209 LSGSGDKTLRLWDIT 223 (390)
T ss_pred eecCCCCcEEEEecc
Confidence 999999999999974
|
|
| >KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.6e-07 Score=101.67 Aligned_cols=53 Identities=26% Similarity=0.473 Sum_probs=46.5
Q ss_pred CceeccCccccccCcEEcCCcccccHHhHHHHHHhC----CCCCCCCCcCCCCCCCC
Q 001349 162 KDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERG----NSSCPITRQKLSSTKLP 214 (1094)
Q Consensus 162 ~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~----~~~CP~c~~~~~~~~~~ 214 (1094)
.+..||||++...=|+.+.|||-||..||-++|..+ ...||+|+..+..+++.
T Consensus 185 t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~ 241 (513)
T KOG2164|consen 185 TDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLL 241 (513)
T ss_pred cCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhcccccee
Confidence 378999999999999999999999999999988754 34699999998887664
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0048 Score=67.38 Aligned_cols=225 Identities=12% Similarity=0.089 Sum_probs=130.9
Q ss_pred EEEEeC-C--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEe-cCCCEEEEEeCCCcEEEEECCCCceEEEE
Q 001349 818 SIACFR-D--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAIL-QSGEMLYSGSLDKTARVWSIGNEEIHCVQ 893 (1094)
Q Consensus 818 ~l~fsp-d--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fs-pdg~~LaSgs~DgtI~vWdi~~~~~~~~~ 893 (1094)
++.|.+ + ++++....+.|..||..++. . ..+.... ...+++. ++|. ++.+..++ +.++|..+++...+.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~--~-~~~~~~~--~~G~~~~~~~g~-l~v~~~~~-~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGE--V-EVIDLPG--PNGMAFDRPDGR-LYVADSGG-IAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTE--E-EEEESSS--EEEEEEECTTSE-EEEEETTC-EEEEETTTTEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCe--E-EEEecCC--CceEEEEccCCE-EEEEEcCc-eEEEecCCCcEEEEe
Confidence 567886 3 66666678999999999883 2 2222222 7778888 5655 45555544 566699998755544
Q ss_pred ecccCc-cceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEec
Q 001349 894 VHDIKD-QIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQT 972 (1094)
Q Consensus 894 ~~~~~~-~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~ 972 (1094)
...... +. ..++.+++.++|+..+.......... ...|.|..++.. ++......
T Consensus 77 ~~~~~~~~~----~~~ND~~vd~~G~ly~t~~~~~~~~~--------------------~~~g~v~~~~~~-~~~~~~~~ 131 (246)
T PF08450_consen 77 DLPDGGVPF----NRPNDVAVDPDGNLYVTDSGGGGASG--------------------IDPGSVYRIDPD-GKVTVVAD 131 (246)
T ss_dssp EEETTCSCT----EEEEEEEE-TTS-EEEEEECCBCTTC--------------------GGSEEEEEEETT-SEEEEEEE
T ss_pred eccCCCccc----CCCceEEEcCCCCEEEEecCCCcccc--------------------ccccceEEECCC-CeEEEEec
Confidence 432111 11 11223447888774333221110000 000456666666 44332211
Q ss_pred cceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCC-Ce-E--EE---EecCC-CCEEEEEEeCC-EEEEE-EcC
Q 001349 973 GHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN-YN-M--VG---SLPTL-SEVRAMVVSSE-LVYLG-CKG 1042 (1094)
Q Consensus 973 ~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~-~~-~--~~---~~~~~-~~v~~l~~spd-~l~sg-s~d 1042 (1094)
.-...+.++|++++..+.......+.|..|++.. +. . .. .+... +..-.++++.+ .++++ ...
T Consensus 132 -------~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~ 204 (246)
T PF08450_consen 132 -------GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG 204 (246)
T ss_dssp -------EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT
T ss_pred -------CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC
Confidence 1245689999999987665554455899998853 21 1 12 22222 34888999987 44444 468
Q ss_pred CeEEEEECCCCcEEEEecccCCcceEEEEEc-CCCCEEEEEe
Q 001349 1043 GTVEIWDQKRQIRIETLQTGTSGKVQCMALD-DNEEFLVIGT 1083 (1094)
Q Consensus 1043 g~I~vwd~~t~~~~~~l~~~h~~~I~~l~~S-pdg~~L~sgs 1083 (1094)
+.|.++|.. |+.+..+... ...+++++|. ++.+.|+..+
T Consensus 205 ~~I~~~~p~-G~~~~~i~~p-~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 205 GRIVVFDPD-GKLLREIELP-VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp TEEEEEETT-SCEEEEEE-S-SSSEEEEEEESTTSSEEEEEE
T ss_pred CEEEEECCC-ccEEEEEcCC-CCCEEEEEEECCCCCEEEEEe
Confidence 999999988 8888888644 3489999994 6766665543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00021 Score=81.22 Aligned_cols=258 Identities=12% Similarity=0.109 Sum_probs=149.5
Q ss_pred cEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeC-----------CCcEEE
Q 001349 815 KVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSL-----------DKTARV 881 (1094)
Q Consensus 815 ~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~-----------DgtI~v 881 (1094)
.=+-+.|||. +|+|-..-| |.+|--.+- ..++.+ .|. .|.-+.|||+.+||+|-|. ...++|
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f--~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESF--DRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccH--HHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence 3467899995 888887766 778965543 444555 355 4888999999999999764 157899
Q ss_pred EECCCCceEE-EEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC------------CCceEEEEeCCEE
Q 001349 882 WSIGNEEIHC-VQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS------------KYPKCLALVQGKV 948 (1094)
Q Consensus 882 Wdi~~~~~~~-~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~------------~~v~~l~~s~~~l 948 (1094)
||+.+|.... +........+.. ...||.|+++++....+ .+.++... ..|+.+.|+|.
T Consensus 287 WDI~tG~lkrsF~~~~~~~~~WP------~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~-- 357 (698)
T KOG2314|consen 287 WDIATGLLKRSFPVIKSPYLKWP------IFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPT-- 357 (698)
T ss_pred EEccccchhcceeccCCCccccc------eEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCC--
Confidence 9999996332 222222222222 23489999988776653 44555432 35666777765
Q ss_pred EEEEcCCeEEEEECCCCceeEEe-----ccc---eeecCCCCCeEEEEEeCCccEEEEEEC-------CC--CEEEEEEC
Q 001349 949 YCGCQDGAIQEIDLATGTFATIQ-----TGH---RKLLGKANPVHALQVHNGLVYTASTSL-------DG--AAVKMWST 1011 (1094)
Q Consensus 949 ~sgs~Dg~I~iwDl~~~~~~~~~-----~~~---~~~~~h~~~V~sl~fs~~~~~las~s~-------Dg--~~I~iwd~ 1011 (1094)
+..+-+|-..+....... +.. ++-.-|.-.=..+-|..+|.+++.--. .| ..+.|+.+
T Consensus 358 -----~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfri 432 (698)
T KOG2314|consen 358 -----SNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRI 432 (698)
T ss_pred -----cceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEe
Confidence 233444544333221110 000 111111111122344456666544210 00 13455555
Q ss_pred CCCe-EEEEecCCCCEEEEEEeCC--EEEE--EE-cCCeEEEEECCC----CcEEEEecccCCcceEEEEEcCCCCEEEE
Q 001349 1012 SNYN-MVGSLPTLSEVRAMVVSSE--LVYL--GC-KGGTVEIWDQKR----QIRIETLQTGTSGKVQCMALDDNEEFLVI 1081 (1094)
Q Consensus 1012 ~~~~-~~~~~~~~~~v~~l~~spd--~l~s--gs-~dg~I~vwd~~t----~~~~~~l~~~h~~~I~~l~~Spdg~~L~s 1081 (1094)
+... ++....-...|...+|.|. .+++ |- ...++.+|.+.+ ...+..+. ....+.+.|+|.|++++.
T Consensus 433 reKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d---k~~~N~vfwsPkG~fvvv 509 (698)
T KOG2314|consen 433 REKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD---KKFANTVFWSPKGRFVVV 509 (698)
T ss_pred eccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc---ccccceEEEcCCCcEEEE
Confidence 4322 3444445677888999886 3332 32 246899998873 23444453 245788999999999887
Q ss_pred Ee---CCCcEEEEeCC
Q 001349 1082 GT---SDGRIQAWGLS 1094 (1094)
Q Consensus 1082 gs---~DG~I~iWdls 1094 (1094)
++ ..|.+.++|++
T Consensus 510 a~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 510 AALVSRRGDLEFYDTD 525 (698)
T ss_pred EEecccccceEEEecc
Confidence 64 46888888863
|
|
| >COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.7e-07 Score=92.77 Aligned_cols=52 Identities=19% Similarity=0.398 Sum_probs=45.0
Q ss_pred CCceeccCccccccCcEEcCCcccccHHhHHH-HHHhCCCCCCCCCcCCCCCC
Q 001349 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQE-WIERGNSSCPITRQKLSSTK 212 (1094)
Q Consensus 161 ~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~-~~~~~~~~CP~c~~~~~~~~ 212 (1094)
..++.|+||++.+.+|+-++|||-||..||-. |-......||.||+....+.
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 45899999999999999999999999999999 76665556999998766544
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0026 Score=69.73 Aligned_cols=238 Identities=16% Similarity=0.201 Sum_probs=144.9
Q ss_pred EEEEEeCC---EEEEEECCCe-EEEEecCCCcceeEEEecccCCCe--EEEEEecCCCEEEEEeC-----CCcEEEEECC
Q 001349 817 LSIACFRD---KIFSGHSDGT-IKVWTGRGSILHLIQQIREHTKAV--TGLAILQSGEMLYSGSL-----DKTARVWSIG 885 (1094)
Q Consensus 817 ~~l~fspd---~LaSgs~Dg~-I~vWd~~t~~~~~~~~l~~H~~~V--~sv~fspdg~~LaSgs~-----DgtI~vWdi~ 885 (1094)
..++.+|+ .++.+-.-|+ ..+||..++ .....+....+.- -.-.||+||++|++.=. .|.|-|||..
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g--~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTG--QLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCC--ceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 34555552 5555555554 556888887 4444443322221 12579999999998744 4889999999
Q ss_pred CCceEEEEec-ccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCC
Q 001349 886 NEEIHCVQVH-DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT 964 (1094)
Q Consensus 886 ~~~~~~~~~~-~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~ 964 (1094)
.+- ..+..+ .+. +.|..+.+.|||+.+++.+.. |..--.. -..++-..+.+.++.+.|..+
T Consensus 86 ~~~-~ri~E~~s~G-------IGPHel~l~pDG~tLvVANGG--I~Thpd~--------GR~kLNl~tM~psL~~ld~~s 147 (305)
T PF07433_consen 86 RGY-RRIGEFPSHG-------IGPHELLLMPDGETLVVANGG--IETHPDS--------GRAKLNLDTMQPSLVYLDARS 147 (305)
T ss_pred CCc-EEEeEecCCC-------cChhhEEEcCCCCEEEEEcCC--CccCccc--------CceecChhhcCCceEEEecCC
Confidence 432 333222 222 223334489999888776432 1100000 001244456677788888888
Q ss_pred CceeEEeccceee--cCCCCCeEEEEEeCCccEEEEEECCCC------EEEEEECCCCeEEEEec--------CCCCEEE
Q 001349 965 GTFATIQTGHRKL--LGKANPVHALQVHNGLVYTASTSLDGA------AVKMWSTSNYNMVGSLP--------TLSEVRA 1028 (1094)
Q Consensus 965 ~~~~~~~~~~~~~--~~h~~~V~sl~fs~~~~~las~s~Dg~------~I~iwd~~~~~~~~~~~--------~~~~v~~ 1028 (1094)
|+.+... .+ .-|...|.-+++.+++...+..-..|- .|-+++.. .....+. -...+-+
T Consensus 148 G~ll~q~----~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gS 221 (305)
T PF07433_consen 148 GALLEQV----ELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGS 221 (305)
T ss_pred Cceeeee----ecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEE
Confidence 8877431 23 336678999999999988777655441 33344332 2222222 2467899
Q ss_pred EEEeCC--EEEE-EEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeC
Q 001349 1029 MVVSSE--LVYL-GCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTS 1084 (1094)
Q Consensus 1029 l~~spd--~l~s-gs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~ 1084 (1094)
|+++++ .+++ +-..|.+.+||..++..+.... -..+..++-.+++ +++|.+.
T Consensus 222 Ia~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~---l~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 222 IAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP---LPDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred EEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc---cCceeeeeecCCc-eEEeCCC
Confidence 999988 4544 4467899999999999887763 3357788877766 5665543
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.7e-06 Score=101.82 Aligned_cols=217 Identities=13% Similarity=0.155 Sum_probs=144.7
Q ss_pred ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCC--cEE
Q 001349 805 LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDK--TAR 880 (1094)
Q Consensus 805 ~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~Dg--tI~ 880 (1094)
....+..|+...+|++|+.+ +|+.|+-.|.|+++++.+| .......+|..+|+-+.=+.||..+.+.+.-. -..
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG--~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG--SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCc--cccccccccccccccccccCCcceeeeeccccCchHH
Confidence 44567788999999999985 9999999999999999999 67778889999999999888998777665432 357
Q ss_pred EEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCC--EEEEEEcCCeEE
Q 001349 881 VWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQG--KVYCGCQDGAIQ 958 (1094)
Q Consensus 881 vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~--~l~sgs~Dg~I~ 958 (1094)
+|+...-- +++.+ |. .-.++.|++. .-+.|+......
T Consensus 1171 LW~~~s~~----------~~~Hs---------f~----------------------ed~~vkFsn~~q~r~~gt~~d~a~ 1209 (1516)
T KOG1832|consen 1171 LWDASSTG----------GPRHS---------FD----------------------EDKAVKFSNSLQFRALGTEADDAL 1209 (1516)
T ss_pred Hhcccccc----------Ccccc---------cc----------------------ccceeehhhhHHHHHhcccccceE
Confidence 89886520 01111 10 1122333321 134555567789
Q ss_pred EEECCCCceeEEe-ccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--E
Q 001349 959 EIDLATGTFATIQ-TGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--L 1035 (1094)
Q Consensus 959 iwDl~~~~~~~~~-~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~ 1035 (1094)
+||+.++....++ .+. .+....-++..|+|+..++.- || .+||++..+.++.|..-..-..-.|+|+ -
T Consensus 1210 ~YDvqT~~~l~tylt~~---~~~~y~~n~a~FsP~D~LIln---dG---vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~e 1280 (1516)
T KOG1832|consen 1210 LYDVQTCSPLQTYLTDT---VTSSYSNNLAHFSPCDTLILN---DG---VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNE 1280 (1516)
T ss_pred EEecccCcHHHHhcCcc---hhhhhhccccccCCCcceEee---Cc---eeeeeccHHHHhhhhhheecccccccCCCce
Confidence 9999999876442 211 112223367788888877653 45 7899998887777763222223356666 4
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEE
Q 001349 1036 VYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVI 1081 (1094)
Q Consensus 1036 l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~s 1081 (1094)
+++-+ .|||+++.+.++....- .-..+.|+..|..++.
T Consensus 1281 VIINS-----EIwD~RTF~lLh~VP~L---dqc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1281 VIINS-----EIWDMRTFKLLHSVPSL---DQCAVTFNSTGDVMYA 1318 (1516)
T ss_pred EEeec-----hhhhhHHHHHHhcCccc---cceEEEeccCccchhh
Confidence 55444 48999998877766321 2356677777776543
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00086 Score=85.97 Aligned_cols=267 Identities=14% Similarity=0.108 Sum_probs=160.4
Q ss_pred CcEEEEEEeCC----EEEEEECCC--eEEEEecCCCc-ceeEEEec-----ccCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 001349 814 GKVLSIACFRD----KIFSGHSDG--TIKVWTGRGSI-LHLIQQIR-----EHTKAVTGLAILQSGEMLYSGSLDKTARV 881 (1094)
Q Consensus 814 ~~V~~l~fspd----~LaSgs~Dg--~I~vWd~~t~~-~~~~~~l~-----~H~~~V~sv~fspdg~~LaSgs~DgtI~v 881 (1094)
..+...+|... +++++.... .|.+....... ...+..+. ...+.|.++.|-++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 45666677653 444444433 34444333221 12344443 34567999999999999999999999999
Q ss_pred E----ECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCC-ceEEEEe-----CCEEEEE
Q 001349 882 W----SIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKY-PKCLALV-----QGKVYCG 951 (1094)
Q Consensus 882 W----di~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~-v~~l~~s-----~~~l~sg 951 (1094)
. +..+....++... ...|.+++ ||||+..+++.+.++++.+....-. +.-.... .+..++.
T Consensus 102 ~~~~~~~~~~~~E~VG~v--d~GI~a~~-------WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsV 172 (928)
T PF04762_consen 102 VREDPDPDEDEIEIVGSV--DSGILAAS-------WSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSV 172 (928)
T ss_pred EEccCCCCCceeEEEEEE--cCcEEEEE-------ECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeee
Confidence 9 6666655555443 66777777 9999999999999988877654321 2222221 1233443
Q ss_pred EcCCeEEEEECCCCceeE------Eec--cceeecCCCCCeEEEEEeCCccEEEEEEC---CC--CEEEEEECCCCeEEE
Q 001349 952 CQDGAIQEIDLATGTFAT------IQT--GHRKLLGKANPVHALQVHNGLVYTASTSL---DG--AAVKMWSTSNYNMVG 1018 (1094)
Q Consensus 952 s~Dg~I~iwDl~~~~~~~------~~~--~~~~~~~h~~~V~sl~fs~~~~~las~s~---Dg--~~I~iwd~~~~~~~~ 1018 (1094)
+....=.-|.-..|+... ..+ ....+. +...-..++|-.||.|+|..+. .| +.+|||+-. |....
T Consensus 173 GWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~s 250 (928)
T PF04762_consen 173 GWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQS 250 (928)
T ss_pred ccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEe
Confidence 332221111111121100 000 001122 4446678999999999998875 44 789999975 65444
Q ss_pred Eec-CCCCEEEEEEeCC--EEEEEEc---CCeEEEEECCCCcEEEEecc---cCCcceEEEEEcCCCCEEEEEeCCCcEE
Q 001349 1019 SLP-TLSEVRAMVVSSE--LVYLGCK---GGTVEIWDQKRQIRIETLQT---GTSGKVQCMALDDNEEFLVIGTSDGRIQ 1089 (1094)
Q Consensus 1019 ~~~-~~~~v~~l~~spd--~l~sgs~---dg~I~vwd~~t~~~~~~l~~---~h~~~I~~l~~Spdg~~L~sgs~DG~I~ 1089 (1094)
+-. -.+--.+++|.|. ++++.-. ...|.+|..+ |-.-..|.- .....|..+.|++|+..|+..-.|. |+
T Consensus 251 tSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vq 328 (928)
T PF04762_consen 251 TSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQ 328 (928)
T ss_pred ccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ce
Confidence 333 2333457889887 5555432 3567777654 333333321 2345899999999999999987665 99
Q ss_pred EEeC
Q 001349 1090 AWGL 1093 (1094)
Q Consensus 1090 iWdl 1093 (1094)
+|-.
T Consensus 329 LWt~ 332 (928)
T PF04762_consen 329 LWTR 332 (928)
T ss_pred EEEe
Confidence 9964
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.2e-06 Score=61.79 Aligned_cols=39 Identities=31% Similarity=0.618 Sum_probs=36.0
Q ss_pred CcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1053 QIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1053 ~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
++++.++ .+|.+.|++++|+|++.+|++|+.||+|++||
T Consensus 1 g~~~~~~-~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTF-RGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEE-ESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEE-cCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3567888 59999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=5e-06 Score=89.05 Aligned_cols=154 Identities=17% Similarity=0.175 Sum_probs=110.1
Q ss_pred EEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc---eEEEEecccCcccee
Q 001349 827 FSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE---IHCVQVHDIKDQIQN 903 (1094)
Q Consensus 827 aSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~---~~~~~~~~~~~~V~~ 903 (1094)
++.+.+-.|-+-|+.|| ..+.|. ..+.|.++.|...++++..|..+|.|.+.|++.+. ..+.....|++.|++
T Consensus 228 fs~G~sqqv~L~nvetg---~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETG---HQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeecc---cccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhh
Confidence 66677778888999998 334444 67789999999989999999999999999998751 222223333333333
Q ss_pred eeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCC
Q 001349 904 LAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANP 983 (1094)
Q Consensus 904 v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~ 983 (1094)
+. .+.|++..+++.+.+|.|.+||.+.-++.. ......||.+.
T Consensus 304 lq----------------------------------~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~---~V~qYeGHvN~ 346 (425)
T KOG2695|consen 304 LQ----------------------------------ILQFSQQKLMASDMTGKIKLYDLRATKCKK---SVMQYEGHVNL 346 (425)
T ss_pred hh----------------------------------hhccccceEeeccCcCceeEeeehhhhccc---ceeeeeccccc
Confidence 32 233455678899999999999998766621 11456677665
Q ss_pred eEEEEE--eCCccEEEEEECCCCEEEEEECCCCeEEEEecC
Q 001349 984 VHALQV--HNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT 1022 (1094)
Q Consensus 984 V~sl~f--s~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~ 1022 (1094)
-..+-+ ++....+++++.| ...+||.++++..+.+++.
T Consensus 347 ~a~l~~~v~~eeg~I~s~GdD-cytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 347 SAYLPAHVKEEEGSIFSVGDD-CYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred ccccccccccccceEEEccCe-eEEEEEecccCceeeccCC
Confidence 555555 3566667777766 5999999999999998874
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0047 Score=64.48 Aligned_cols=294 Identities=15% Similarity=0.141 Sum_probs=146.6
Q ss_pred cEEEEeeCCCCeEEEeCCcceeeccc-CCCcEEEEEE-eCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEE
Q 001349 786 VKVLSNGHDSSADFWNHRELVHVDSS-ENGKVLSIAC-FRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAI 863 (1094)
Q Consensus 786 ~~l~s~s~dg~I~vWd~~~~~~~~~~-h~~~V~~l~f-spd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~f 863 (1094)
.+++.|+..+.+.--|.......+.. -.+.|.+-+. -.|+++.|++.|.+++-++++| ...+.+..-..-=.....
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tG--s~~w~f~~~~~vk~~a~~ 101 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTG--SQIWNFVILETVKVRAQC 101 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecch--hheeeeeehhhhccceEE
Confidence 57788888888877777633222221 1233333222 4679999999999999999999 555555432221122344
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccce---eeeecCceE-EEeeCCCeEEEEEeCCe-EEEEcCC--C
Q 001349 864 LQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQ---NLAVSNSIL-CFIPQGAGIKVHLRNGK-TKLLNSS--K 936 (1094)
Q Consensus 864 spdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~---~v~~~~~~~-~fspdg~~l~~~~~~g~-i~l~~~~--~ 936 (1094)
.+++..+..|+.|++.+..|..+.. ++....-.+.+. .++..+..+ +-+..|..+++.-.++. ..+|.+. +
T Consensus 102 d~~~glIycgshd~~~yalD~~~~~--cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~ 179 (354)
T KOG4649|consen 102 DFDGGLIYCGSHDGNFYALDPKTYG--CVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFG 179 (354)
T ss_pred cCCCceEEEecCCCcEEEecccccc--eEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcCC
Confidence 5689999999999999999998853 332222122111 111111122 22334444444444432 3445432 1
Q ss_pred CceEE-EEeCCEEEEEEcCCeEEE--------EECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEE
Q 001349 937 YPKCL-ALVQGKVYCGCQDGAIQE--------IDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVK 1007 (1094)
Q Consensus 937 ~v~~l-~~s~~~l~sgs~Dg~I~i--------wDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~ 1007 (1094)
.+.+- .+....+..++.||.+.- |..+++..+..-+ -..|. .-..+.+..++-+.+.....| --
T Consensus 180 PiF~splcv~~sv~i~~VdG~l~~f~~sG~qvwr~~t~GpIf~~P----c~s~P-s~q~i~~~~~~Cf~~~~p~~g--hL 252 (354)
T KOG4649|consen 180 PIFASPLCVGSSVIITTVDGVLTSFDESGRQVWRPATKGPIFMEP----CESRP-SCQQISLENENCFCAPLPIAG--HL 252 (354)
T ss_pred ccccCceeccceEEEEEeccEEEEEcCCCcEEEeecCCCceeccc----ccCCC-cceEEEEecCCeEEEeccccc--eE
Confidence 22111 011122344445555544 4444444332111 11111 113344444444444433332 45
Q ss_pred EEECCCCeEEEEecCC---CCEEEEEEe-CCEEEEEEcCCeEEEEECCCCcEEEEecccCCc---ceEEEE-----E-cC
Q 001349 1008 MWSTSNYNMVGSLPTL---SEVRAMVVS-SELVYLGCKGGTVEIWDQKRQIRIETLQTGTSG---KVQCMA-----L-DD 1074 (1094)
Q Consensus 1008 iwd~~~~~~~~~~~~~---~~v~~l~~s-pd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~---~I~~l~-----~-Sp 1074 (1094)
+|..++|...+.+-.. ......-.| |.++..++.||.+.|.-.... +... ..|.+ .+..+- | ||
T Consensus 253 ~w~~~~g~t~~vy~~p~l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~~s--l~~~-~s~~g~lq~~~~~el~~eIFsSP 329 (354)
T KOG4649|consen 253 LWATQSGTTLHVYLSPKLRFDLHSPGISYPKLLRRSSGDGKVMILMTSKS--LAEI-SSNGGELQNLEAIELSNEIFSSP 329 (354)
T ss_pred EEEecCCcEEEEEeCcccceeccCCCCcchhhhhhhcCCCcEEEEEeccc--cccc-ccCCCccceEEEeecCcccccCC
Confidence 6777766443332211 111111112 336777888998888743221 2222 11222 122221 2 22
Q ss_pred ---CCCEEEEEeCCCcEEEEeCC
Q 001349 1075 ---NEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1075 ---dg~~L~sgs~DG~I~iWdls 1094 (1094)
+| .|+.|+.|..|+-||+.
T Consensus 330 vii~g-rl~igcRDdYv~cldl~ 351 (354)
T KOG4649|consen 330 VIIDG-RLLIGCRDDYVRCLDLD 351 (354)
T ss_pred eEEcc-EEEEEEccCeEEEEecc
Confidence 44 57788899999999973
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.003 Score=76.29 Aligned_cols=121 Identities=15% Similarity=0.199 Sum_probs=77.9
Q ss_pred EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEE----------------EECCCCEEEEEE
Q 001349 947 KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAS----------------TSLDGAAVKMWS 1010 (1094)
Q Consensus 947 ~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las----------------~s~Dg~~I~iwd 1010 (1094)
.+++++.+|.+...|..+|+.+...... ...+..+++..|+.+ ...+| .+.-.|
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~---------~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G-~l~AlD 372 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEV---------EQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKG-GLAALD 372 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEee---------ccccccCCceEEEccccccccCcccccCCCCCCCce-EEEEEe
Confidence 3788899999999999999987543210 011222333222221 11233 788889
Q ss_pred CCCCeEEEEecCC---------CC--EEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCC
Q 001349 1011 TSNYNMVGSLPTL---------SE--VRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE 1077 (1094)
Q Consensus 1011 ~~~~~~~~~~~~~---------~~--v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~ 1077 (1094)
..+|+.+.+.... .. ...+....+.+++++.||.|+.+|..+|+.+..++.+......=+.|..+|+
T Consensus 373 ~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~ 450 (488)
T cd00216 373 PKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGK 450 (488)
T ss_pred CCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCE
Confidence 9999888777633 11 1245667789999999999999999999999888643322222233444553
|
The alignment model contains an 8-bladed beta-propeller. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0019 Score=76.09 Aligned_cols=193 Identities=12% Similarity=0.029 Sum_probs=115.5
Q ss_pred CcEEEEEEeCC--E-EEEEEC---CCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEE-eCC--CcEEEEEC
Q 001349 814 GKVLSIACFRD--K-IFSGHS---DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSG-SLD--KTARVWSI 884 (1094)
Q Consensus 814 ~~V~~l~fspd--~-LaSgs~---Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSg-s~D--gtI~vWdi 884 (1094)
+.+..-.|+|| . ++..+. +..|.++|+.++....+. ...+.+....|+|||+.++.. +.+ ..|.++|+
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt---~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl 264 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA---SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDT 264 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe---cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEEC
Confidence 37788999996 3 554333 356899999988443333 244556678899999876543 333 46777888
Q ss_pred CCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCC
Q 001349 885 GNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT 964 (1094)
Q Consensus 885 ~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~ 964 (1094)
.++....+... ...... ..|+|||+.++..+..+ ....|.++|+.+
T Consensus 265 ~~g~~~~LT~~--~~~d~~-------p~~SPDG~~I~F~Sdr~-------------------------g~~~Iy~~dl~~ 310 (419)
T PRK04043 265 NTKTLTQITNY--PGIDVN-------GNFVEDDKRIVFVSDRL-------------------------GYPNIFMKKLNS 310 (419)
T ss_pred CCCcEEEcccC--CCccCc-------cEECCCCCEEEEEECCC-------------------------CCceEEEEECCC
Confidence 88764443322 111111 23999999765443211 113677788887
Q ss_pred CceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC--------CEEEEEECCCCeEEEEecCCCCEEEEEEeCC--
Q 001349 965 GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG--------AAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE-- 1034 (1094)
Q Consensus 965 ~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg--------~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd-- 1034 (1094)
++..... ..+.. ...|+|++.+++..+..+ ..|.+.|+.++.. +.+..........|+||
T Consensus 311 g~~~rlt-----~~g~~----~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~~~~~p~~SPDG~ 380 (419)
T PRK04043 311 GSVEQVV-----FHGKN----NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTANGVNQFPRFSSDGG 380 (419)
T ss_pred CCeEeCc-----cCCCc----CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCCCCcCCeEECCCCC
Confidence 7764221 11111 237899999887776542 3688888887754 44443333346889998
Q ss_pred EEEEEE-cC--CeEEEEECCCC
Q 001349 1035 LVYLGC-KG--GTVEIWDQKRQ 1053 (1094)
Q Consensus 1035 ~l~sgs-~d--g~I~vwd~~t~ 1053 (1094)
.++..+ .. ..+.+.++...
T Consensus 381 ~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 381 SIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EEEEEEccCCcEEEEEEecCCC
Confidence 343333 22 24666676543
|
|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.09 E-value=1e-06 Score=104.75 Aligned_cols=52 Identities=15% Similarity=0.379 Sum_probs=48.6
Q ss_pred ceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCC
Q 001349 163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLP 214 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~ 214 (1094)
-++||.|..-.+|.|++.|||.||..||+.-++.....||.|+..|...++.
T Consensus 643 ~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~ 694 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVH 694 (698)
T ss_pred ceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccccc
Confidence 6899999999999999999999999999998887788999999999988875
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0039 Score=68.15 Aligned_cols=208 Identities=10% Similarity=0.015 Sum_probs=126.9
Q ss_pred cCcEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEe-CC-EEEEEECCCeEEEEecCCCcceeEEEec--c-cCCCe
Q 001349 784 EMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACF-RD-KIFSGHSDGTIKVWTGRGSILHLIQQIR--E-HTKAV 858 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fs-pd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~--~-H~~~V 858 (1094)
++..+++-...+.|..|+............+ ...+++. ++ .++.+..++. .++|..++....+.... . .....
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~l~v~~~~~~-~~~d~~~g~~~~~~~~~~~~~~~~~~ 88 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDGRLYVADSGGI-AVVDPDTGKVTVLADLPDGGVPFNRP 88 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEESSS-EEEEEEECTTSEEEEEETTCE-EEEETTTTEEEEEEEEETTCSCTEEE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEEEecCC-CceEEEEccCCEEEEEEcCce-EEEecCCCcEEEEeeccCCCcccCCC
Confidence 4666777777889999998754433322223 6777777 55 7777776554 55599998655555552 1 34568
Q ss_pred EEEEEecCCCEEEEEeCC--------CcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEE
Q 001349 859 TGLAILQSGEMLYSGSLD--------KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK 930 (1094)
Q Consensus 859 ~sv~fspdg~~LaSgs~D--------gtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~ 930 (1094)
+.+++.|+|++.++.... |.|..++.. ++....... - ..++.++|+|+++.+
T Consensus 89 ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~--~-------~~pNGi~~s~dg~~l---------- 148 (246)
T PF08450_consen 89 NDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG--L-------GFPNGIAFSPDGKTL---------- 148 (246)
T ss_dssp EEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE--E-------SSEEEEEEETTSSEE----------
T ss_pred ceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC--c-------ccccceEECCcchhe----------
Confidence 899999999988776654 446666666 432222111 1 123455588888864
Q ss_pred EEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCce-eEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEE
Q 001349 931 LLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTF-ATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMW 1009 (1094)
Q Consensus 931 l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~-~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iw 1009 (1094)
+++-+..+.|..|++..... +........+.........++++.++.+.++.... +.|.++
T Consensus 149 -----------------yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~-~~I~~~ 210 (246)
T PF08450_consen 149 -----------------YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG-GRIVVF 210 (246)
T ss_dssp -----------------EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT-TEEEEE
T ss_pred -----------------eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC-CEEEEE
Confidence 33445567777787753322 11100001111212347789999888877765545 499999
Q ss_pred ECCCCeEEEEecCC-CCEEEEEEe
Q 001349 1010 STSNYNMVGSLPTL-SEVRAMVVS 1032 (1094)
Q Consensus 1010 d~~~~~~~~~~~~~-~~v~~l~~s 1032 (1094)
|.. |+.+..+... ..+++++|.
T Consensus 211 ~p~-G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 211 DPD-GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp ETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred CCC-ccEEEEEcCCCCCEEEEEEE
Confidence 987 8888888743 689999995
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00011 Score=80.53 Aligned_cols=80 Identities=11% Similarity=0.069 Sum_probs=69.5
Q ss_pred eeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecC-CCEEEEEeCCCcEEE
Q 001349 806 VHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARV 881 (1094)
Q Consensus 806 ~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspd-g~~LaSgs~DgtI~v 881 (1094)
.+.+.+|...|..++|||. ++..++.+.+|+|.|+.+. .++..+..| ..+|+++|.-| .++|+.|-..|.|.|
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~--~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS--CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccc--eeeeheecc-CCceeeeeccCCcceeEEeccCceEEE
Confidence 4467788999999999994 7899999999999999998 677777777 88999999885 568888888999999
Q ss_pred EECCCCc
Q 001349 882 WSIGNEE 888 (1094)
Q Consensus 882 Wdi~~~~ 888 (1094)
||++..+
T Consensus 263 yD~R~~~ 269 (463)
T KOG1645|consen 263 YDMRQPE 269 (463)
T ss_pred EEccCCC
Confidence 9998764
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00053 Score=84.12 Aligned_cols=366 Identities=16% Similarity=0.185 Sum_probs=223.4
Q ss_pred HHHHHHHHHHhhhccccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhcc--CCchHHHHHHHHHHHhhc
Q 001349 265 TITELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFN--SVDPRVLEATIFLLSELG 342 (1094)
Q Consensus 265 ~~~~l~~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~--s~~~~v~~~av~~L~~l~ 342 (1094)
+++.+...|+.+-. ...+..++...|..+++.-+ |..- ......++..+.++|-. -++-++.-+.+++...++
T Consensus 121 ~~~~~d~yiE~lYe--~~~ek~~~~~~il~La~~~~-NL~~--l~~ne~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS 195 (708)
T PF05804_consen 121 SINDLDEYIELLYE--DIPEKIRGTSLILQLARNPE-NLEE--LVQNETLMSALARVLREDWKKSVELATNIIYIFFCFS 195 (708)
T ss_pred CHHHHHHHHHHHhc--ccHHHHHHHHHHHHHhCCcc-hHHH--HHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 46788888887764 24666778888888886532 2222 23455666666666655 334556667777777665
Q ss_pred ccccchhhhhccCCCcHHHHH-HHHhcC--hHHHHH-HHHhc----CCChHHHHHhhhh-HHHHHHHHhccccccccccC
Q 001349 343 SRDKSVIHTLTRVESDVERIV-ALFKKG--LLEAVV-LIDLL----RPSTRTLIEMDMM-ESLMTVIKKKEEDFLKMCLK 413 (1094)
Q Consensus 343 s~~~~~~~~i~~~~~~~~~L~-~lLk~g--~~~Aa~-~l~~L----~~~~~~~~~~~~~-~~Ll~~l~~~~~~~~~~~~~ 413 (1094)
.... ...+.. ..-++.|. .++-.. +.+... -+... +..+.++...+.. +.+-.++++.. . +
T Consensus 196 ~f~~--fH~~l~-~~kiG~l~m~iie~Elkr~~~w~~~l~~~~~~~~~~~~~~~~~~~~~kk~~~l~~kQe-q-L----- 265 (708)
T PF05804_consen 196 NFSQ--FHPILA-HYKIGSLCMEIIEHELKRHDLWQEELRKKKKAAEEKPEAKKDYEKELKKLQTLIRKQE-Q-L----- 265 (708)
T ss_pred hHHH--HHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhHHHHHHHHHHHHHHHH-H-H-----
Confidence 4433 111110 01111111 221111 111000 00000 0111111111111 22222222211 1 0
Q ss_pred chhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHH
Q 001349 414 PKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVM 493 (1094)
Q Consensus 414 ~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~ 493 (1094)
=..++++|-+| +.+..+...++..|.+++|+++|+.++.+-...++++|-++ .-.+.+++.|+..+.+++++
T Consensus 266 -lrv~~~lLlNL------Aed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkL-Si~~ENK~~m~~~giV~kL~ 337 (708)
T PF05804_consen 266 -LRVAFYLLLNL------AEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKL-SIFKENKDEMAESGIVEKLL 337 (708)
T ss_pred -HHHHHHHHHHH------hcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHH-cCCHHHHHHHHHcCCHHHHH
Confidence 12456666655 77788999999999999999999999998888888877655 55566899999999999999
Q ss_pred HHHHhcCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCC
Q 001349 494 ESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKM 573 (1094)
Q Consensus 494 ~l~~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~ 573 (1094)
.++.+....-...++.+|.+|..- .++..++-+.|.++. |..+|+ .+.++..+-.+|.||-..++.+.+
T Consensus 338 kLl~s~~~~l~~~aLrlL~NLSfd------~~~R~~mV~~GlIPk---Lv~LL~--d~~~~~val~iLy~LS~dd~~r~~ 406 (708)
T PF05804_consen 338 KLLPSENEDLVNVALRLLFNLSFD------PELRSQMVSLGLIPK---LVELLK--DPNFREVALKILYNLSMDDEARSM 406 (708)
T ss_pred HHhcCCCHHHHHHHHHHHHHhCcC------HHHHHHHHHCCCcHH---HHHHhC--CCchHHHHHHHHHHhccCHhhHHH
Confidence 999998877777889999999544 556678899999998 666775 467778899999999998888888
Q ss_pred CccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcccccccCChhhHHHHHHHHhCCCccccccc------cccccccccC
Q 001349 574 SIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQGRFTTSGKSLTRAMLLKRAGVGKSYKNLT------RTEQIGNICG 647 (1094)
Q Consensus 574 ~~~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~g~~s~~g~~~~~~~l~~~~g~~~~~~~~~------~~~~~~~~~~ 647 (1094)
-.|. ++++.|+..|..+....++....-.+.||+-. ..+++ -+.+-.|+.......+ -...|||++.
T Consensus 407 f~~T-dcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~-----~rnaq-lm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~ 479 (708)
T PF05804_consen 407 FAYT-DCIPQLMQMLLENSEEEVQLELIALLINLALN-----KRNAQ-LMCEGNGLQSLMKRALKTRDPLLLKLIRNISQ 479 (708)
T ss_pred Hhhc-chHHHHHHHHHhCCCccccHHHHHHHHHHhcC-----HHHHH-HHHhcCcHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 8877 59999999888877777676666666666522 22332 2333344443222111 1345677764
Q ss_pred CCCCchHHhhhhhHHHHhhheeeeccC
Q 001349 648 EDDDTSEEEKAADDWERKMALVLVSHD 674 (1094)
Q Consensus 648 ~~~~~~~~~~~~~~~~~k~a~~l~~~~ 674 (1094)
.. ...+. .-.+|...++..+...+
T Consensus 480 h~--~~~k~-~f~~~i~~L~~~v~~~~ 503 (708)
T PF05804_consen 480 HD--GPLKE-LFVDFIGDLAKIVSSGD 503 (708)
T ss_pred cC--chHHH-HHHHHHHHHHHHhhcCC
Confidence 22 22222 34568888777654433
|
|
| >KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.7e-06 Score=96.40 Aligned_cols=74 Identities=20% Similarity=0.436 Sum_probs=60.4
Q ss_pred CCCCCCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCC----CCChhHHHHHHHHHHHHh
Q 001349 156 GKHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTK----LPKTNYVLKRLIASWQEQ 230 (1094)
Q Consensus 156 ~~~~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~----~~~pN~~l~~~i~~~~~~ 230 (1094)
.+..+..+|.|-||..++.+||+++|||+||..||.+.++. ...||.||..+.... ...+|+.+..+|.+++..
T Consensus 77 ~~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 77 GPEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred cCccccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc-CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 44566789999999999999999999999999999998885 557999998876422 221477888999988764
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.5e-05 Score=80.91 Aligned_cols=143 Identities=17% Similarity=0.224 Sum_probs=92.7
Q ss_pred EeCCEEEEEEcCCeEEEEECCCCceeEEeccceeec-CCCCCeEEEEEeCCccEEEEE------ECCCCEEEEEECCCCe
Q 001349 943 LVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLL-GKANPVHALQVHNGLVYTAST------SLDGAAVKMWSTSNYN 1015 (1094)
Q Consensus 943 ~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~-~h~~~V~sl~fs~~~~~las~------s~Dg~~I~iwd~~~~~ 1015 (1094)
..++.+++++.||.+.+++.+.-.... .+.. .|.+ -.+.++...+.++.++ ..| ..+.|+++..+
T Consensus 99 ~~~t~V~~~~~dg~~~v~s~~~~~~~~-----~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d--~~~a~~~~p~~ 170 (319)
T KOG4714|consen 99 MTDNRVCIGYADGSLAVFSTDKDLALM-----SRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQD--NFYANTLDPIK 170 (319)
T ss_pred ccCCceEecCCCceEEEEechHHHhhh-----hhccccccc-ccccceeecccEEecCCcceEeecc--ceeeecccccc
Confidence 334568999999999999877521110 1111 1111 1112222223333322 112 45666665322
Q ss_pred EEE-EecCCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcC-CCCEEEEEeCCCcEEE
Q 001349 1016 MVG-SLPTLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDD-NEEFLVIGTSDGRIQA 1090 (1094)
Q Consensus 1016 ~~~-~~~~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Sp-dg~~L~sgs~DG~I~i 1090 (1094)
... .......|.+++-+|. .+++|+.||.+.+||.+.......+...|...|+.+-|+| ++..|+++++||.+.-
T Consensus 171 t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~ 250 (319)
T KOG4714|consen 171 TLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWH 250 (319)
T ss_pred cccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEE
Confidence 211 1112345888998886 7889999999999999988766666678999999999999 4578999999999999
Q ss_pred EeC
Q 001349 1091 WGL 1093 (1094)
Q Consensus 1091 Wdl 1093 (1094)
||-
T Consensus 251 wda 253 (319)
T KOG4714|consen 251 WDA 253 (319)
T ss_pred EcC
Confidence 985
|
|
| >KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.8e-06 Score=91.11 Aligned_cols=65 Identities=17% Similarity=0.347 Sum_probs=54.0
Q ss_pred CceeccCccccccCcEEc-CCcccccHHhHHHHHHhCCCCCCCCCcCCCCCC---CCChhHHHHHHHHHH
Q 001349 162 KDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTK---LPKTNYVLKRLIASW 227 (1094)
Q Consensus 162 ~~~~CpIc~~~~~dPv~~-~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~---~~~pN~~l~~~i~~~ 227 (1094)
...+|++|..+|.||-++ .|=||||+.||.+++.. ...||.|+..+.... -++++..|+.++.+.
T Consensus 14 ~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred cceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 378999999999999885 89999999999999998 668999998776553 223677888777664
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.2e-05 Score=89.36 Aligned_cols=143 Identities=10% Similarity=0.205 Sum_probs=107.1
Q ss_pred EEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC--------CEEEEEECC
Q 001349 941 LALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG--------AAVKMWSTS 1012 (1094)
Q Consensus 941 l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg--------~~I~iwd~~ 1012 (1094)
+..++..+++|...|+|.+-|.++-+.+ +++..|++.|..+..+ |..+++++... ..|+|||++
T Consensus 183 mR~Nnr~lf~G~t~G~V~LrD~~s~~~i------ht~~aHs~siSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLR 254 (1118)
T KOG1275|consen 183 MRYNNRNLFCGDTRGTVFLRDPNSFETI------HTFDAHSGSISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLR 254 (1118)
T ss_pred EEecCcEEEeecccceEEeecCCcCcee------eeeeccccceeeeecc--CCeEEEeecccccccccccchhhhhhhh
Confidence 3444456899999999999999998887 6788899998877665 44566665433 368999999
Q ss_pred CCeEEEEecCCCCEEEEEEeCC---EEEEEEcCCeEEEEECCC---Cc-EEEEecccCCcceEEEEEcCCCCEEEEEeCC
Q 001349 1013 NYNMVGSLPTLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKR---QI-RIETLQTGTSGKVQCMALDDNEEFLVIGTSD 1085 (1094)
Q Consensus 1013 ~~~~~~~~~~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t---~~-~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~D 1085 (1094)
+.+.+..+.-.....-+.|.|. .+++.+..|...+-|..+ .. -+..+ ......+..+++|++|+.|+.|..+
T Consensus 255 mmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v-~p~~s~i~~fDiSsn~~alafgd~~ 333 (1118)
T KOG1275|consen 255 MMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMV-NPNGSGISAFDISSNGDALAFGDHE 333 (1118)
T ss_pred hhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEE-ccCCCcceeEEecCCCceEEEeccc
Confidence 8877766664444456677776 688899999999999432 21 11222 2234459999999999999999999
Q ss_pred CcEEEEe
Q 001349 1086 GRIQAWG 1092 (1094)
Q Consensus 1086 G~I~iWd 1092 (1094)
|.|.+|.
T Consensus 334 g~v~~wa 340 (1118)
T KOG1275|consen 334 GHVNLWA 340 (1118)
T ss_pred CcEeeec
Confidence 9999994
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00058 Score=80.44 Aligned_cols=239 Identities=11% Similarity=0.030 Sum_probs=147.3
Q ss_pred CCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCC------------CEEEEEeCCCcE
Q 001349 812 ENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSG------------EMLYSGSLDKTA 879 (1094)
Q Consensus 812 h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg------------~~LaSgs~DgtI 879 (1094)
|...-.++.|+|.-|+.-+....|.|-|..+- +.++.+.-|...|+.|.|.|-. -.|+++...|.|
T Consensus 14 ~~sN~~A~Dw~~~GLiAygshslV~VVDs~s~--q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSGLIAYGSHSLVSVVDSRSL--QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred CcccccccccCccceEEEecCceEEEEehhhh--hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 33446788999984444444567888898877 7899999999999999997621 257777788999
Q ss_pred EEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEE
Q 001349 880 RVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQE 959 (1094)
Q Consensus 880 ~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~i 959 (1094)
.+||...+.. ......+.+++..+.|-+ .-++++ +.+++-....+|.+
T Consensus 92 il~d~~~~s~-~~~l~~~~~~~qdl~W~~----~rd~Sr---------------------------d~LlaIh~ss~lvL 139 (1062)
T KOG1912|consen 92 ILVDFVLASV-INWLSHSNDSVQDLCWVP----ARDDSR---------------------------DVLLAIHGSSTLVL 139 (1062)
T ss_pred EEEEehhhhh-hhhhcCCCcchhheeeee----ccCcch---------------------------heeEEecCCcEEEE
Confidence 9999988642 222333455565555211 011111 13566667788999
Q ss_pred EECCCCceeEEeccceeecCCCCCeEEEEEeC-CccEEEEEECCCCEEEEEECCC-------CeEEEEec-CCC------
Q 001349 960 IDLATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDGAAVKMWSTSN-------YNMVGSLP-TLS------ 1024 (1094)
Q Consensus 960 wDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~-~~~~las~s~Dg~~I~iwd~~~-------~~~~~~~~-~~~------ 1024 (1094)
|+..+|+....+.. + .....++.++| |...+...+..| .+-+-+.-. ++..+.-. |.+
T Consensus 140 wntdtG~k~Wk~~y-----s-~~iLs~f~~DPfd~rh~~~l~s~g-~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~ler 212 (1062)
T KOG1912|consen 140 WNTDTGEKFWKYDY-----S-HEILSCFRVDPFDSRHFCVLGSKG-FVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLER 212 (1062)
T ss_pred EEccCCceeecccc-----C-CcceeeeeeCCCCcceEEEEccCc-eEEEEeccCCCCCCCCceeEEEecCccchhhhhh
Confidence 99999987643221 1 23455677765 222222223333 554444321 12111111 111
Q ss_pred ------C-------------EEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCC--CEEEE
Q 001349 1025 ------E-------------VRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNE--EFLVI 1081 (1094)
Q Consensus 1025 ------~-------------v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg--~~L~s 1081 (1094)
. ...++|+|. .++.......+.|+|++-..++.... -..+.+.-+.|-|++ ..|++
T Consensus 213 e~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvp-ier~~akfv~vlP~~~rd~Lfc 291 (1062)
T KOG1912|consen 213 ETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVP-IERGGAKFVDVLPDPRRDALFC 291 (1062)
T ss_pred hhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEE-eccCCcceeEeccCCCcceEEE
Confidence 0 123556776 34445566789999999888887773 344445556666665 67999
Q ss_pred EeCCCcEEEEe
Q 001349 1082 GTSDGRIQAWG 1092 (1094)
Q Consensus 1082 gs~DG~I~iWd 1092 (1094)
+-.||.+.+|-
T Consensus 292 lH~nG~ltirv 302 (1062)
T KOG1912|consen 292 LHSNGRLTIRV 302 (1062)
T ss_pred EecCCeEEEEE
Confidence 99999999994
|
|
| >PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.7e-06 Score=71.90 Aligned_cols=39 Identities=28% Similarity=0.791 Sum_probs=32.1
Q ss_pred ccCccccccCc------------E-EcCCcccccHHhHHHHHHhCCCCCCCCC
Q 001349 166 CPITTHIFDDP------------V-TLETGQTYERRAIQEWIERGNSSCPITR 205 (1094)
Q Consensus 166 CpIc~~~~~dP------------v-~~~cGhtfc~~ci~~~~~~~~~~CP~c~ 205 (1094)
|+||++-|.+| + ..+|||.|-..||.+|+.. +.+||+||
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 99999999433 3 3589999999999999987 44899997
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D .... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0012 Score=79.02 Aligned_cols=213 Identities=15% Similarity=0.223 Sum_probs=130.9
Q ss_pred cEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCC-eEEEEEecCCCEEEEEeCCCc-----EEEEECCCCc
Q 001349 815 KVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKA-VTGLAILQSGEMLYSGSLDKT-----ARVWSIGNEE 888 (1094)
Q Consensus 815 ~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~-V~sv~fspdg~~LaSgs~Dgt-----I~vWdi~~~~ 888 (1094)
.|+|+.-+...++.|+.+|.|.+.+-.- +.++.++.+... |..+-...+..+|++.+.|+. ++|||++.-+
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~---~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSF---QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccc---eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 6666666666999999999988776432 456788888877 555544444578888887754 8999987531
Q ss_pred ----eEEE---EecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC--CEEEEEEcCCeEEE
Q 001349 889 ----IHCV---QVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ--GKVYCGCQDGAIQE 959 (1094)
Q Consensus 889 ----~~~~---~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~--~~l~sgs~Dg~I~i 959 (1094)
..++ ...++..+ .....+.+++++. ..+++|-.||.|..
T Consensus 104 ~n~sP~c~~~~ri~~~~np--------------------------------~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~ 151 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNP--------------------------------TNPSPASSLAVSEDLKTIVCGFTNGLVIC 151 (933)
T ss_pred CCCCcceeeeeeeeccCCC--------------------------------CCCCcceEEEEEccccEEEEEecCcEEEE
Confidence 1222 11110000 0122344555543 35888999999888
Q ss_pred EECCCCceeEEecc-ceeecCCCCCeEEEEEeCCccE--EEEEECCCCEEEEEECCCCeE-EEEec-CCCCEEEEEEeCC
Q 001349 960 IDLATGTFATIQTG-HRKLLGKANPVHALQVHNGLVY--TASTSLDGAAVKMWSTSNYNM-VGSLP-TLSEVRAMVVSSE 1034 (1094)
Q Consensus 960 wDl~~~~~~~~~~~-~~~~~~h~~~V~sl~fs~~~~~--las~s~Dg~~I~iwd~~~~~~-~~~~~-~~~~v~~l~~spd 1034 (1094)
+.-. ....... ..-...-..+|+.+.+..++.. +++. . ..|.+|.+....+ ...+. ++....|..+++.
T Consensus 152 ~~GD---i~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~T--t-~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~ 225 (933)
T KOG2114|consen 152 YKGD---ILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVAT--T-EQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDG 225 (933)
T ss_pred EcCc---chhccccceeeeccCCCCceeeEEecCCceeEEEEe--c-ceeEEEEecCCCcceeeeccCCccceeeecCCC
Confidence 8421 1110000 0111223479999999766554 3333 1 3799999985442 33344 5677888888876
Q ss_pred -E-EEEEEcCCeEEEEECCCCcEEEEecccCCcceEE
Q 001349 1035 -L-VYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQC 1069 (1094)
Q Consensus 1035 -~-l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~ 1069 (1094)
. +++++ +..+.+||....++...|..||......
T Consensus 226 t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~~~ 261 (933)
T KOG2114|consen 226 TYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEMLV 261 (933)
T ss_pred CccEEEec-CceEEEEcCCCcceeeeecCCCeEEEEE
Confidence 4 44444 4579999999888888885577654443
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.95 E-value=6.7e-06 Score=84.49 Aligned_cols=78 Identities=31% Similarity=0.450 Sum_probs=71.2
Q ss_pred CCCCCCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHhCCCC
Q 001349 156 GKHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGG 234 (1094)
Q Consensus 156 ~~~~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~~~~~ 234 (1094)
.+.++|+.+.|.|..++|++||++|.|-||.|.-|.+++..-...-|++|.+++..+++ ||+.|+..|..|...+.+.
T Consensus 204 k~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~i-pN~alkevIa~fl~~n~w~ 281 (284)
T KOG4642|consen 204 KKREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLI-PNLALKEVIAAFLKENEWA 281 (284)
T ss_pred ccccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhc-cchHHHHHHHHHHHhcccc
Confidence 45678889999999999999999999999999999999987555799999999999998 9999999999999987653
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.8e-05 Score=83.46 Aligned_cols=149 Identities=17% Similarity=0.217 Sum_probs=103.7
Q ss_pred EEEeCCeEEEEcCCCCceEEEEe--CCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeC-CccEEEE
Q 001349 922 VHLRNGKTKLLNSSKYPKCLALV--QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTAS 998 (1094)
Q Consensus 922 ~~~~~g~i~l~~~~~~v~~l~~s--~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~-~~~~las 998 (1094)
+....|.-.-+.....|.++.|. ++.++.|+.+|.|..+|++.+..-.... ....-|...|+++..-. +..++.+
T Consensus 239 ~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~--a~rlyh~Ssvtslq~Lq~s~q~Lma 316 (425)
T KOG2695|consen 239 TNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWC--AQRLYHDSSVTSLQILQFSQQKLMA 316 (425)
T ss_pred EEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcc--eEEEEcCcchhhhhhhccccceEee
Confidence 33344555556666677777775 4678999999999999999763221111 22345788999998865 6777777
Q ss_pred EECCCCEEEEEECCCCeE---EEEecCCCC-E--EEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCC---cce
Q 001349 999 TSLDGAAVKMWSTSNYNM---VGSLPTLSE-V--RAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTS---GKV 1067 (1094)
Q Consensus 999 ~s~Dg~~I~iwd~~~~~~---~~~~~~~~~-v--~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~---~~I 1067 (1094)
.+.+| +|++||.+.-++ ++++.++.+ - .-+-+.+. .+++++.|...|||.+++|+++.+++.... ..+
T Consensus 317 S~M~g-kikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~ 395 (425)
T KOG2695|consen 317 SDMTG-KIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDI 395 (425)
T ss_pred ccCcC-ceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccc
Confidence 78887 999999997666 777764321 1 12223333 788899999999999999999998854322 246
Q ss_pred EEEEEc
Q 001349 1068 QCMALD 1073 (1094)
Q Consensus 1068 ~~l~~S 1073 (1094)
.+++|+
T Consensus 396 ~sv~~~ 401 (425)
T KOG2695|consen 396 PSVAFD 401 (425)
T ss_pred cceehh
Confidence 667764
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.002 Score=75.05 Aligned_cols=85 Identities=21% Similarity=0.408 Sum_probs=67.2
Q ss_pred EEEECCCCe----EEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEE
Q 001349 1007 KMWSTSNYN----MVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLV 1080 (1094)
Q Consensus 1007 ~iwd~~~~~----~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~ 1080 (1094)
.+|+...++ .+.+++..+.+.+.+++|+ .++.|+.||.|.+||...+..... .+.-.++.++|+|+|.+++
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~---ka~~~P~~iaWHp~gai~~ 315 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA---KAEFIPTLIAWHPDGAIFV 315 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee---eecccceEEEEcCCCcEEE
Confidence 455554433 2345567889999999998 899999999999999987743322 2334679999999999999
Q ss_pred EEeCCCcEEEEeCC
Q 001349 1081 IGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1081 sgs~DG~I~iWdls 1094 (1094)
+|+..|.+.+||++
T Consensus 316 V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 316 VGSEQGELQCFDMA 329 (545)
T ss_pred EEcCCceEEEEEee
Confidence 99999999999974
|
|
| >COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.1e-05 Score=83.95 Aligned_cols=67 Identities=16% Similarity=0.301 Sum_probs=55.5
Q ss_pred eeccCccccccCcEEc-CCcccccHHhHHHHHHhCCCCCCCCCcC-CCCCCCCChhHHHHHHHHHHHHhC
Q 001349 164 FVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQK-LSSTKLPKTNYVLKRLIASWQEQN 231 (1094)
Q Consensus 164 ~~CpIc~~~~~dPv~~-~cGhtfc~~ci~~~~~~~~~~CP~c~~~-~~~~~~~~pN~~l~~~i~~~~~~~ 231 (1094)
+.||.|..++++|+-+ +|||+||..||+..+-.....||.|... +--..+. |+...+.-|+++.+.+
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~-pD~dk~~EvE~~lkkq 343 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLT-PDIDKKLEVEKALKKQ 343 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccC-ccHHHHHHHHHHHHHH
Confidence 9999999999999988 8999999999998766656789999864 3344565 8888888888877643
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00035 Score=81.25 Aligned_cols=232 Identities=13% Similarity=0.132 Sum_probs=155.9
Q ss_pred HHHHhhhccccchHhHHHHHHHHHHHHHhc-cchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchh
Q 001349 271 HAITSLCMSEILNESEMAVLQIERCWLEAS-MELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVI 349 (1094)
Q Consensus 271 ~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~-~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~ 349 (1094)
..|..|+..+...-+++|+=.++.++.... ....+..+++-|.++. |+.|.+..|.+.|+-+|.|+. .+-..+
T Consensus 113 ~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~-----Ll~s~~~~v~eQavWALgNIa-gds~~~ 186 (514)
T KOG0166|consen 113 RLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQ-----LLSSPSADVREQAVWALGNIA-GDSPDC 186 (514)
T ss_pred HHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHH-----HhcCCcHHHHHHHHHHHhccc-cCChHH
Confidence 344555544333336777777777776544 3366666666666444 666899999999999999994 444456
Q ss_pred hhhccCCCcHHHHHHHHhcC-----hHHHHHHHHhc----CCChHHHHHhhhhHHHHHHHHhccccccccccCchhhHHH
Q 001349 350 HTLTRVESDVERIVALFKKG-----LLEAVVLIDLL----RPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVL 420 (1094)
Q Consensus 350 ~~i~~~~~~~~~L~~lLk~g-----~~~Aa~~l~~L----~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~ 420 (1094)
+.++-..+++++|+.++... .-.|+.+|.+| +|.+.--.....+|.|+.+|...+++-. .+|+-+
T Consensus 187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl------~Da~WA 260 (514)
T KOG0166|consen 187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVL------TDACWA 260 (514)
T ss_pred HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHH------HHHHHH
Confidence 66666788999999998665 45799999999 2444333333445999999888654321 233322
Q ss_pred HHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHH-hc
Q 001349 421 LLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFM-AA 499 (1094)
Q Consensus 421 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~-~~ 499 (1094)
+.-|.. .-++.--.++..|++|.|++.|+..+..-+..|-..+-+...-++.-...+-+.+.++.|..|+. +-
T Consensus 261 -lsyLsd-----g~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~ 334 (514)
T KOG0166|consen 261 -LSYLTD-----GSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSP 334 (514)
T ss_pred -HHHHhc-----CChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCc
Confidence 333322 22455667788899999999998777666666655555655556666777788889999998887 44
Q ss_pred CCchhHHHHHHHHHHHhcccc
Q 001349 500 SDGERFEIVCFLSELVKLNRR 520 (1094)
Q Consensus 500 ~~~~~~~~~~~l~el~~~~r~ 520 (1094)
.+.-|..|.=+++.+..++..
T Consensus 335 ~~~ikkEAcW~iSNItAG~~~ 355 (514)
T KOG0166|consen 335 KESIKKEACWTISNITAGNQE 355 (514)
T ss_pred chhHHHHHHHHHHHhhcCCHH
Confidence 555666777788888776543
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0016 Score=76.77 Aligned_cols=272 Identities=10% Similarity=0.087 Sum_probs=149.0
Q ss_pred ccccccccccCcEEEEeeCCCCeEEEeCCcc---eeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEE
Q 001349 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHREL---VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQ 849 (1094)
Q Consensus 775 ~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~---~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~ 849 (1094)
.+++..+...+.+++.|+.-|.+.+|+-... .....+..+.+..+..|++ ++|.|+..|.|.|+-+..+......
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~ 114 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD 114 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence 4557778888999999999999999987622 2222334455566666764 8888899999999977654221111
Q ss_pred Ee----cccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc---eEEEEecccCccceeeeecCceEEEeeCCCeEEE
Q 001349 850 QI----REHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE---IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKV 922 (1094)
Q Consensus 850 ~l----~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~---~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~ 922 (1094)
.+ +.|...|+++.|++|+..+++|...|+|..-.+++.. ..........+.|-.+......+-++.--+.+..
T Consensus 115 ~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r~~Lc 194 (726)
T KOG3621|consen 115 YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTRCILC 194 (726)
T ss_pred eeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhhhhhhee
Confidence 11 2478899999999999999999999999988887721 1122222334455555433332222222222333
Q ss_pred EEeCCeEEEEcCC--CC--ceEEEEeCC-------EEEEEEcCCeEEEEECCC-CceeEEecc-------ceeecC----
Q 001349 923 HLRNGKTKLLNSS--KY--PKCLALVQG-------KVYCGCQDGAIQEIDLAT-GTFATIQTG-------HRKLLG---- 979 (1094)
Q Consensus 923 ~~~~g~i~l~~~~--~~--v~~l~~s~~-------~l~sgs~Dg~I~iwDl~~-~~~~~~~~~-------~~~~~~---- 979 (1094)
....++++-.... +. -..-.|-+| .|+++--. .++|...- |..+.+..- ...+..
T Consensus 195 ~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG--~RlWead~~G~V~~Thqfk~ala~~p~p~i~~~s~ 272 (726)
T KOG3621|consen 195 QTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG--LRLWEADFAGEVIKTHQFKDALARPPAPEIPIRSL 272 (726)
T ss_pred ecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC--CceEEeecceeEEEeeehhhhhccCCCCcccCCCc
Confidence 3333332211111 11 122223222 34444333 35554432 332222100 000000
Q ss_pred -------------CCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCCEEEEEEcCCeEE
Q 001349 980 -------------KANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSELVYLGCKGGTVE 1046 (1094)
Q Consensus 980 -------------h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd~l~sgs~dg~I~ 1046 (1094)
|-+-..+...+.+ .+.+.+.- -|+|+|.++...+........|..++.+.+-|++-..||.++
T Consensus 273 esp~~~~~~~~~q~ls~~k~~~l~~~--~vLa~te~--Giyv~d~~~~~v~l~se~~~DI~dVs~~~neiFvL~~d~~l~ 348 (726)
T KOG3621|consen 273 ESPNQRSLPSGTQHLSLSKSSTLHSD--RVLAWTEV--GIYVFDSNNSQVYLWSEGGHDILDVSHCGNEIFVLNLDRGLK 348 (726)
T ss_pred CCccccCCCCCccccccceeEEeecc--eEEEeecc--eEEEEEeccceEEEeecCCCceeEEeecCceEEEEecCCcee
Confidence 1111122222222 22333323 388888887766665556777888888888666666666666
Q ss_pred EEECCC
Q 001349 1047 IWDQKR 1052 (1094)
Q Consensus 1047 vwd~~t 1052 (1094)
+..+.+
T Consensus 349 ~~sv~s 354 (726)
T KOG3621|consen 349 VESVAS 354 (726)
T ss_pred EEEeeh
Confidence 666544
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00022 Score=85.45 Aligned_cols=185 Identities=15% Similarity=0.222 Sum_probs=127.8
Q ss_pred cCcEEEEeeCCCCeEEEeCCcceeec--ccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEE
Q 001349 784 EMVKVLSNGHDSSADFWNHRELVHVD--SSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGL 861 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~~~~~~~--~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv 861 (1094)
.+..++.|+....+..+|..+..... .-..+.|+=+..+...+++|...|+|.+-|..+. +.++++..|++.|..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~--~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSF--ETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcC--ceeeeeeccccceeee
Confidence 57788889998888888987433332 2234458888888889999999999999999988 8999999999999876
Q ss_pred EEecCCCEEEEEeC---------CCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEE
Q 001349 862 AILQSGEMLYSGSL---------DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLL 932 (1094)
Q Consensus 862 ~fspdg~~LaSgs~---------DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~ 932 (1094)
+. .|+.|+|+|. |.-|+|||++.-. .+.... +...+..+.|.|.=
T Consensus 224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr--al~PI~-------~~~~P~flrf~Psl--------------- 277 (1118)
T KOG1275|consen 224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR--ALSPIQ-------FPYGPQFLRFHPSL--------------- 277 (1118)
T ss_pred ec--cCCeEEEeecccccccccccchhhhhhhhhhh--ccCCcc-------cccCchhhhhcccc---------------
Confidence 65 6899999986 5568999998742 111110 11111111233321
Q ss_pred cCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEEC
Q 001349 933 NSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWST 1011 (1094)
Q Consensus 933 ~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~ 1011 (1094)
...+++.+..|..++-|..+-..... +..-+......+..+++++++..++.+..+| .|.+|--
T Consensus 278 ------------~t~~~V~S~sGq~q~vd~~~lsNP~~--~~~~v~p~~s~i~~fDiSsn~~alafgd~~g-~v~~wa~ 341 (1118)
T KOG1275|consen 278 ------------TTRLAVTSQSGQFQFVDTATLSNPPA--GVKMVNPNGSGISAFDISSNGDALAFGDHEG-HVNLWAD 341 (1118)
T ss_pred ------------cceEEEEecccceeeccccccCCCcc--ceeEEccCCCcceeEEecCCCceEEEecccC-cEeeecC
Confidence 12578888889988888433211100 0011222334589999999999999999987 9999973
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0032 Score=75.58 Aligned_cols=216 Identities=13% Similarity=0.074 Sum_probs=137.0
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCCc-ceeecccCCCc-EEEEEEeCC--EEEEEECCC-----eEEEEecCCC---c-
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHRE-LVHVDSSENGK-VLSIACFRD--KIFSGHSDG-----TIKVWTGRGS---I- 844 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~~-~~~~~~~h~~~-V~~l~fspd--~LaSgs~Dg-----~I~vWd~~t~---~- 844 (1094)
.+.+++.+..++.|+.+|.|.+.+-.- ..+-+..+... |..+-...+ +|++.+.|+ .++|||++.. .
T Consensus 28 isc~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 28 ISCCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred eeEEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 455666788999999999988887763 33666667666 444433343 888877765 4999998632 1
Q ss_pred ceeEE--Eecc-----cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC---CceEEEEecccCccceeeeecCceEEEe
Q 001349 845 LHLIQ--QIRE-----HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGN---EEIHCVQVHDIKDQIQNLAVSNSILCFI 914 (1094)
Q Consensus 845 ~~~~~--~l~~-----H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~---~~~~~~~~~~~~~~V~~v~~~~~~~~fs 914 (1094)
..++. .+.+ ...++.+++++.+-+.+|.|-.||.|..+.-+- ...+....+..+++|+.+. +.
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~-------~~ 180 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLA-------LR 180 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeE-------Ee
Confidence 34441 2222 245788999999999999999999998875321 1123333344556666665 44
Q ss_pred eCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCcc
Q 001349 915 PQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLV 994 (1094)
Q Consensus 915 pdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~ 994 (1094)
.+++. ++....-..|..|.+....+.. .....|+.+++|..+++...
T Consensus 181 ~d~~s----------------------------~lFv~Tt~~V~~y~l~gr~p~~-----~~ld~~G~~lnCss~~~~t~ 227 (933)
T KOG2114|consen 181 SDGKS----------------------------VLFVATTEQVMLYSLSGRTPSL-----KVLDNNGISLNCSSFSDGTY 227 (933)
T ss_pred cCCce----------------------------eEEEEecceeEEEEecCCCcce-----eeeccCCccceeeecCCCCc
Confidence 44432 1222334568888887444221 34566788899999987766
Q ss_pred EEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCCE
Q 001349 995 YTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSEL 1035 (1094)
Q Consensus 995 ~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd~ 1035 (1094)
-+++++. ..+.+||.....+...|.-+..-....++.++
T Consensus 228 qfIca~~--e~l~fY~sd~~~~cfaf~~g~kk~~~~~~~g~ 266 (933)
T KOG2114|consen 228 QFICAGS--EFLYFYDSDGRGPCFAFEVGEKKEMLVFSFGL 266 (933)
T ss_pred cEEEecC--ceEEEEcCCCcceeeeecCCCeEEEEEEecCE
Confidence 3444443 37999999877777777744443444444443
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.013 Score=65.05 Aligned_cols=223 Identities=15% Similarity=0.233 Sum_probs=134.0
Q ss_pred CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeC----------CCcEEEEECCCCceEEEEecccCccce
Q 001349 833 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSL----------DKTARVWSIGNEEIHCVQVHDIKDQIQ 902 (1094)
Q Consensus 833 g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~----------DgtI~vWdi~~~~~~~~~~~~~~~~V~ 902 (1094)
+.+.|.|..++ +.+..+.. +-.-.+..+|||+.+++++. .-.|.+||..+-....-...+.+....
T Consensus 17 ~rv~viD~d~~--k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~ 92 (342)
T PF06433_consen 17 SRVYVIDADSG--KLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ 92 (342)
T ss_dssp EEEEEEETTTT--EEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--
T ss_pred ceEEEEECCCC--cEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe
Confidence 47899999988 56665542 33344678999999987643 336899999986533322232221222
Q ss_pred eeeecCceEEEeeCCCeEEEEEeC--CeEEEEcCCCC--------ceEEEE---eCCEEEEEEcCCeEEEEECC-CCcee
Q 001349 903 NLAVSNSILCFIPQGAGIKVHLRN--GKTKLLNSSKY--------PKCLAL---VQGKVYCGCQDGAIQEIDLA-TGTFA 968 (1094)
Q Consensus 903 ~v~~~~~~~~fspdg~~l~~~~~~--g~i~l~~~~~~--------v~~l~~---s~~~l~sgs~Dg~I~iwDl~-~~~~~ 968 (1094)
.+ .......++.||+++.+.+.. ..+.+.|.... .-|... .+..+.+-|.||++....+. .|+..
T Consensus 93 ~~-~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 93 VV-PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA 171 (342)
T ss_dssp BS---GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEE
T ss_pred ec-ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEe
Confidence 21 234556799999999988877 45667765322 112222 24678899999999988887 44443
Q ss_pred EEec--------------------cceeecCCCCCeEEEEEeCCc----------------------------------c
Q 001349 969 TIQT--------------------GHRKLLGKANPVHALQVHNGL----------------------------------V 994 (1094)
Q Consensus 969 ~~~~--------------------~~~~~~~h~~~V~sl~fs~~~----------------------------------~ 994 (1094)
.... +...+....+.|..+.++.+. .
T Consensus 172 ~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r 251 (342)
T PF06433_consen 172 QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR 251 (342)
T ss_dssp EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCe
Confidence 2110 001112233344444443222 1
Q ss_pred EEEEEE--CC------CCEEEEEECCCCeEEEEecCCCCEEEEEEeCC---EEEEEE-cCCeEEEEECCCCcEEEEec
Q 001349 995 YTASTS--LD------GAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE---LVYLGC-KGGTVEIWDQKRQIRIETLQ 1060 (1094)
Q Consensus 995 ~las~s--~D------g~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd---~l~sgs-~dg~I~vwd~~t~~~~~~l~ 1060 (1094)
+.+.-. .+ +..|-+||+.+++.+..+.-...+.++.++.+ +|++.+ .++.+.|||..+|+.+.++.
T Consensus 252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 111110 00 12788889999999999986667889999987 666554 57999999999999999885
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00078 Score=79.78 Aligned_cols=277 Identities=14% Similarity=0.184 Sum_probs=149.8
Q ss_pred CCCeEEEeCC-cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEE
Q 001349 794 DSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEML 870 (1094)
Q Consensus 794 dg~I~vWd~~-~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~L 870 (1094)
.|+|.||--. ++. ....-.-.+++++|+|. .|++|-.-|.+.+|...+. +.-.....|..+|..+.||++|..+
T Consensus 40 ~GSVtIfadtGEPq-r~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~--e~htv~~th~a~i~~l~wS~~G~~l 116 (1416)
T KOG3617|consen 40 GGSVTIFADTGEPQ-RDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTT--ETHTVVETHPAPIQGLDWSHDGTVL 116 (1416)
T ss_pred CceEEEEecCCCCC-cccccceehhhhccChHHHHHhhccccceeEEEecCCc--eeeeeccCCCCCceeEEecCCCCeE
Confidence 3778887433 211 11112234577999997 8899999999999999887 4444456799999999999999999
Q ss_pred EEEeCCCcEEEEECCC-CceEE--EEecccCccceeeeecCceEEEeeCCCe------EEEEEeCCeE---EEEcCCCCc
Q 001349 871 YSGSLDKTARVWSIGN-EEIHC--VQVHDIKDQIQNLAVSNSILCFIPQGAG------IKVHLRNGKT---KLLNSSKYP 938 (1094)
Q Consensus 871 aSgs~DgtI~vWdi~~-~~~~~--~~~~~~~~~V~~v~~~~~~~~fspdg~~------l~~~~~~g~i---~l~~~~~~v 938 (1094)
+|+..-|.|.+|..+. |+... +..++....+.-..+. .++++.. .++.+.+..+ .-|.....-
T Consensus 117 ~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfR-----L~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~ 191 (1416)
T KOG3617|consen 117 MTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFR-----LSYDREEKFKLAKAAVTGDESALDEPFNWKESLAE 191 (1416)
T ss_pred EEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEe-----cCCChHHhhhhhhhhccCchhhhcccccCccchhh
Confidence 9999999999998763 22111 1122223333322211 2344221 1222222111 122222222
Q ss_pred eEEEEe---CC-EEEEEEcCCeEEEEECCCCceeEEecccee----ecCCCCCeEEEEE-eCCccEEEEE----------
Q 001349 939 KCLALV---QG-KVYCGCQDGAIQEIDLATGTFATIQTGHRK----LLGKANPVHALQV-HNGLVYTAST---------- 999 (1094)
Q Consensus 939 ~~l~~s---~~-~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~----~~~h~~~V~sl~f-s~~~~~las~---------- 999 (1094)
.++.-+ +| .++.++.+|+|+..|-. |....+...... +.+....|.++.- -.+..+++-.
T Consensus 192 rs~~ksgv~~g~~F~~~~~~GtVyyvdq~-g~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~v 270 (1416)
T KOG3617|consen 192 RSDEKSGVPKGTEFLFAGKSGTVYYVDQN-GRQRTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAV 270 (1416)
T ss_pred ccccccCCCCCcEEEEEcCCceEEEEcCC-CcEEEEEEccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhh
Confidence 222222 23 37788899999988843 444333222111 2222333333322 1222221111
Q ss_pred -------ECCCCEEEEEECCCC----eEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECC-C------CcEEEEe
Q 001349 1000 -------SLDGAAVKMWSTSNY----NMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQK-R------QIRIETL 1059 (1094)
Q Consensus 1000 -------s~Dg~~I~iwd~~~~----~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~-t------~~~~~~l 1059 (1094)
+..| .|-+-.. .| .....+..+..+++++++.. .++.|...|.+.+|--. . +.-...+
T Consensus 271 k~sgk~GgrqG-giA~sEs-sGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l 348 (1416)
T KOG3617|consen 271 KVSGKLGGRQG-GIACSES-SGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTL 348 (1416)
T ss_pred hhccccCCccC-ccccccc-cccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEe
Confidence 1111 1111100 01 11122234678999999987 78889999999999532 2 1223333
Q ss_pred c--ccCCcceEEEEEcCCCCEEEE
Q 001349 1060 Q--TGTSGKVQCMALDDNEEFLVI 1081 (1094)
Q Consensus 1060 ~--~~h~~~I~~l~~Spdg~~L~s 1081 (1094)
. ....+.|+.+.|.|-.+.++.
T Consensus 349 ~~~~e~~g~I~~i~Wg~~k~~~av 372 (1416)
T KOG3617|consen 349 NGKRESLGKISLIRWGPIKSTAAV 372 (1416)
T ss_pred cCchhhccceEEEEeccccchhhh
Confidence 2 123458999999986554443
|
|
| >KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.78 E-value=1.3e-05 Score=92.70 Aligned_cols=68 Identities=22% Similarity=0.483 Sum_probs=55.9
Q ss_pred CCCceeccCccccccCcEE-cCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHH
Q 001349 160 PPKDFVCPITTHIFDDPVT-LETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQ 228 (1094)
Q Consensus 160 ~~~~~~CpIc~~~~~dPv~-~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~ 228 (1094)
+++++.||||..++.||+. +.|||.||+.|+..|+.. +..||.|+..+.....+..-..+++.+.++.
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKLP 86 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhcc
Confidence 5668999999999999999 499999999999999998 7789999998877766522445566666554
|
|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.77 E-value=7.1e-06 Score=91.58 Aligned_cols=50 Identities=22% Similarity=0.439 Sum_probs=43.0
Q ss_pred CceeccCccccccCcEEcCCcccccHHhHHHHHH----hCCCCCCCCCcCCCCC
Q 001349 162 KDFVCPITTHIFDDPVTLETGQTYERRAIQEWIE----RGNSSCPITRQKLSST 211 (1094)
Q Consensus 162 ~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~----~~~~~CP~c~~~~~~~ 211 (1094)
.+..|-+|.+.-.||+...|.|+|||.||.++.. ..+.+||.|...++-.
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 3688999999999999999999999999988765 3345799999888754
|
|
| >KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.75 E-value=1.2e-05 Score=84.91 Aligned_cols=52 Identities=19% Similarity=0.169 Sum_probs=45.2
Q ss_pred ceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCC
Q 001349 163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLP 214 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~ 214 (1094)
.-.|+||...+.-||.++|+|-||.-||......+..+||+||.+++..-+.
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~ 58 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDF 58 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcchhc
Confidence 4569999999999999999999999999985555567899999999877665
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0095 Score=63.61 Aligned_cols=223 Identities=15% Similarity=0.155 Sum_probs=125.5
Q ss_pred ccccCcEEEEeeCCCCeEEEeCC----cc---eeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEe
Q 001349 781 LAFEMVKVLSNGHDSSADFWNHR----EL---VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQI 851 (1094)
Q Consensus 781 ~~~d~~~l~s~s~dg~I~vWd~~----~~---~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l 851 (1094)
++.+|+.+|. -.|..|.|-..+ .. .++.....-.=..++|||| .||.+...|+|+++|+.+. .+..+
T Consensus 5 ~~~~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~---~lf~I 80 (282)
T PF15492_consen 5 LSSDGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS---ELFVI 80 (282)
T ss_pred ecCCCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc---eeEEc
Confidence 3455665554 355666665433 22 1233334445578999998 8999999999999999865 22233
Q ss_pred cc-------cCCCeEEEEEecC------CCEEEEEeCCCcEEEEECCCCc------eEEEEec-ccCccceeeeecCceE
Q 001349 852 RE-------HTKAVTGLAILQS------GEMLYSGSLDKTARVWSIGNEE------IHCVQVH-DIKDQIQNLAVSNSIL 911 (1094)
Q Consensus 852 ~~-------H~~~V~sv~fspd------g~~LaSgs~DgtI~vWdi~~~~------~~~~~~~-~~~~~V~~v~~~~~~~ 911 (1094)
.. -...|-.+.|.+. ...|+.-..+|.++-|-+..+. ...+... ..+..|.++.
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~v------ 154 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAV------ 154 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEE------
Confidence 21 2356777777652 2256666778888777754321 1222221 1244555555
Q ss_pred EEeeCCCeEEEEEeCCeEEEE--cCCCCceEEEEeCC----EEEEEEcCCeE------EEEECCCCceeEEeccceeecC
Q 001349 912 CFIPQGAGIKVHLRNGKTKLL--NSSKYPKCLALVQG----KVYCGCQDGAI------QEIDLATGTFATIQTGHRKLLG 979 (1094)
Q Consensus 912 ~fspdg~~l~~~~~~g~i~l~--~~~~~v~~l~~s~~----~l~sgs~Dg~I------~iwDl~~~~~~~~~~~~~~~~~ 979 (1094)
+.|..+.+.+++....-.-. .....+++...-++ +.++...|+.. .+|.+-+.... .....
T Consensus 155 -y~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~f------s~~~~ 227 (282)
T PF15492_consen 155 -YHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFF------SRQGQ 227 (282)
T ss_pred -EcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeee------ecccc
Confidence 78887777776654321100 01112333333221 12233323221 22222221111 01112
Q ss_pred CCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec
Q 001349 980 KANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP 1021 (1094)
Q Consensus 980 h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~ 1021 (1094)
....|..|..+||+..+++...+| .|.+|++.+-...+.+.
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG-~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSG-SLSLWEIPSLRLQRSWK 268 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCC-eEEEEecCcchhhcccc
Confidence 346799999999999999999997 99999998877766655
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.021 Score=69.06 Aligned_cols=264 Identities=15% Similarity=0.188 Sum_probs=144.0
Q ss_pred EeCCEEEEEECCCeEEEEecCCCcceeEEEecccCC------CeE--EEEEecCCCEEEEEeCCCcEEEEECCCCceEEE
Q 001349 821 CFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTK------AVT--GLAILQSGEMLYSGSLDKTARVWSIGNEEIHCV 892 (1094)
Q Consensus 821 fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~------~V~--sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~ 892 (1094)
+..+.++.++.+|.|.-.|..++ +.+..+..... .+. .+.+. ++..++.++.||.|.-+|.++|+..-.
T Consensus 59 v~~g~vy~~~~~g~l~AlD~~tG--~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~ 135 (488)
T cd00216 59 VVDGDMYFTTSHSALFALDAATG--KVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWK 135 (488)
T ss_pred EECCEEEEeCCCCcEEEEECCCC--hhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeee
Confidence 44568888888999999999999 55555543222 110 11111 226788888999999999999873322
Q ss_pred EecccCc-c---ce-eeeecCceEEEe----------eCCCeEEEEEeCCeEEEEcCCC---------------------
Q 001349 893 QVHDIKD-Q---IQ-NLAVSNSILCFI----------PQGAGIKVHLRNGKTKLLNSSK--------------------- 936 (1094)
Q Consensus 893 ~~~~~~~-~---V~-~v~~~~~~~~fs----------pdg~~l~~~~~~g~i~l~~~~~--------------------- 936 (1094)
....... . +. +..+....+.+. .+|..++.-..+|.. +|....
T Consensus 136 ~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~-~W~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (488)
T cd00216 136 FGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKL-LWRFYTTEPDPNAFPTWGPDRQMWGPG 214 (488)
T ss_pred ecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCce-eeEeeccCCCcCCCCCCCCCcceecCC
Confidence 2211110 0 10 111111111111 112222222223332 232110
Q ss_pred --Cc-eEEEEe--CCEEEEEEcCC------------------eEEEEECCCCceeEEecccee----ecCCCCCe-EEEE
Q 001349 937 --YP-KCLALV--QGKVYCGCQDG------------------AIQEIDLATGTFATIQTGHRK----LLGKANPV-HALQ 988 (1094)
Q Consensus 937 --~v-~~l~~s--~~~l~sgs~Dg------------------~I~iwDl~~~~~~~~~~~~~~----~~~h~~~V-~sl~ 988 (1094)
.+ ...++. .+.+++++.++ .|.-+|..+|+....+..... +.+...++ ..+.
T Consensus 215 g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~ 294 (488)
T cd00216 215 GGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK 294 (488)
T ss_pred CCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc
Confidence 00 012332 46788888775 799999999998865432100 01111111 1111
Q ss_pred -EeCCc-cEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCCEEEEEE------------------cCCeEEEE
Q 001349 989 -VHNGL-VYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSELVYLGC------------------KGGTVEIW 1048 (1094)
Q Consensus 989 -fs~~~-~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd~l~sgs------------------~dg~I~vw 1048 (1094)
.+... .+++.++.+| .+...|..+|+.+...... ...++.+|+.++.++ .+|.+.-.
T Consensus 295 ~~~g~~~~~V~~g~~~G-~l~ald~~tG~~~W~~~~~--~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~Al 371 (488)
T cd00216 295 PKDGKPVPAIVHAPKNG-FFYVLDRTTGKLISARPEV--EQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAAL 371 (488)
T ss_pred ccCCCeeEEEEEECCCc-eEEEEECCCCcEeeEeEee--ccccccCCceEEEccccccccCcccccCCCCCCCceEEEEE
Confidence 11111 2455555665 8999999999998876532 122445566555532 36789999
Q ss_pred ECCCCcEEEEecccC-C------cce--EEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1049 DQKRQIRIETLQTGT-S------GKV--QCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1049 d~~t~~~~~~l~~~h-~------~~I--~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
|..+|+.+.....+. . ... ..+.. .+..|++++.||.|+.+|.
T Consensus 372 D~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~ 423 (488)
T cd00216 372 DPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDA 423 (488)
T ss_pred eCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEEC
Confidence 999999888775330 0 111 12222 4678888999999998875
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger | Back alignment and domain information |
|---|
Probab=97.64 E-value=3.2e-05 Score=67.04 Aligned_cols=45 Identities=24% Similarity=0.591 Sum_probs=33.2
Q ss_pred ccCccccccC-cEEc-CCcccccHHhHHHHHHh--CCCCCCCCCcCCCC
Q 001349 166 CPITTHIFDD-PVTL-ETGQTYERRAIQEWIER--GNSSCPITRQKLSS 210 (1094)
Q Consensus 166 CpIc~~~~~d-Pv~~-~cGhtfc~~ci~~~~~~--~~~~CP~c~~~~~~ 210 (1094)
||.|.-.-.| |++. .|||.|=..||.+|++. .+..||+||++...
T Consensus 35 Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 4444443334 6655 89999999999999985 34679999997653
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0049 Score=72.71 Aligned_cols=112 Identities=13% Similarity=0.152 Sum_probs=82.6
Q ss_pred cEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCce---EE
Q 001349 815 KVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEI---HC 891 (1094)
Q Consensus 815 ~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~---~~ 891 (1094)
..+|++-..++++.|+.-|.+++|+-.++.. ......+-.+.+..+..|++..++|.|+..|.|.|+.+..+.. ..
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~-~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~ 115 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEM-RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY 115 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecCchhh-hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee
Confidence 3456666667999999999999999888732 2333334556677788888889999999999999998877541 11
Q ss_pred EEe--cccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC
Q 001349 892 VQV--HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS 934 (1094)
Q Consensus 892 ~~~--~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~ 934 (1094)
+.. ..|+..|+++. |++++..+.++...|++.....
T Consensus 116 ~t~~d~~~~~rVTal~-------Ws~~~~k~ysGD~~Gkv~~~~L 153 (726)
T KOG3621|consen 116 VTPCDKSHKCRVTALE-------WSKNGMKLYSGDSQGKVVLTEL 153 (726)
T ss_pred eccccccCCceEEEEE-------ecccccEEeecCCCceEEEEEe
Confidence 211 12577888888 8999999988888888766543
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0008 Score=78.30 Aligned_cols=261 Identities=13% Similarity=0.148 Sum_probs=163.0
Q ss_pred hhhccccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhcc
Q 001349 275 SLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTR 354 (1094)
Q Consensus 275 ~L~~s~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~ 354 (1094)
.|..+..-.-+|+|+-.+-.++.++..=+.+. -...++.-++.+|..+..-...+.+.-.|.+|-.. +.=---+..
T Consensus 159 ~Ll~s~~~~v~eQavWALgNIagds~~~Rd~v---l~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrg-k~P~P~~~~ 234 (514)
T KOG0166|consen 159 QLLSSPSADVREQAVWALGNIAGDSPDCRDYV---LSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRG-KNPSPPFDV 234 (514)
T ss_pred HHhcCCcHHHHHHHHHHHhccccCChHHHHHH---HhhcchHHHHHHhccccchHHHHHHHHHHHHHHcC-CCCCCcHHH
Confidence 34445555567888888888887775433222 23334455666666655556789999999999432 210001111
Q ss_pred CCCcHHHHHHHHhcC----hHHHHHHHHhcCCChHHHHH----hhhhHHHHHHHHhcccc------------------cc
Q 001349 355 VESDVERIVALFKKG----LLEAVVLIDLLRPSTRTLIE----MDMMESLMTVIKKKEED------------------FL 408 (1094)
Q Consensus 355 ~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~~~~~~----~~~~~~Ll~~l~~~~~~------------------~~ 408 (1094)
....+|.|..+|+.- ..+|..+|-.|.--..+.+. .+.+|.|+++|...+-. ++
T Consensus 235 v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QT 314 (514)
T KOG0166|consen 235 VAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQT 314 (514)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHH
Confidence 234568888888775 66888888877543333333 34449999999874311 00
Q ss_pred ccccCchhhHHHHHHHHhcCCc---------------ccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHh
Q 001349 409 KMCLKPKSVSVLLLGQMIGDSE---------------ESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCM 473 (1094)
Q Consensus 409 ~~~~~~~~aa~~~l~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~ 473 (1094)
...+ ...++..|..|++... -+.+.+..-+++..|-+|.|+..+++++-+-|.-|+.++.++.
T Consensus 315 q~vi--~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~t 392 (514)
T KOG0166|consen 315 QVVI--NSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLT 392 (514)
T ss_pred HHHH--hcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhc
Confidence 0000 0122222222222111 2345667788899999999999999999999999999888665
Q ss_pred hcc-CcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhccccchh---HHHHHHhhhcCcchhHHH
Q 001349 474 QED-GKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFN---EQILHIIKDEGTYSSMHT 541 (1094)
Q Consensus 474 ~~~-~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r~~~~---~~~l~~i~~~~~~~~~~~ 541 (1094)
... ..--.|+.+.+-++||..||.....+-=..++..|..++.....-.. +..-..|++-|+...|+.
T Consensus 393 s~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~ 464 (514)
T KOG0166|consen 393 SSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIEN 464 (514)
T ss_pred ccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHH
Confidence 443 34446788889999999999555555544568888888776532211 445556888888887655
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00041 Score=77.10 Aligned_cols=227 Identities=12% Similarity=0.062 Sum_probs=148.7
Q ss_pred CcEEEEeeCCCCeEEEeCCc-----ceeecccCCCcEEEEEEeCC--EEEEEEC-CCeEEEEecCCCcceeEEEecccCC
Q 001349 785 MVKVLSNGHDSSADFWNHRE-----LVHVDSSENGKVLSIACFRD--KIFSGHS-DGTIKVWTGRGSILHLIQQIREHTK 856 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~~-----~~~~~~~h~~~V~~l~fspd--~LaSgs~-Dg~I~vWd~~t~~~~~~~~l~~H~~ 856 (1094)
..++.+++.||.++.|.... .+..+..|.+.|.+++.+-+ ++.|++. |..++++|+.+-.......+..-.+
T Consensus 20 a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg 99 (558)
T KOG0882|consen 20 AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPG 99 (558)
T ss_pred hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCC
Confidence 56889999999999998763 34455678888888888876 7778777 9999999988653221222222223
Q ss_pred CeEEEEEec-CC--CEEEEEeCCCcEEEEECCCCc-eEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEE
Q 001349 857 AVTGLAILQ-SG--EMLYSGSLDKTARVWSIGNEE-IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLL 932 (1094)
Q Consensus 857 ~V~sv~fsp-dg--~~LaSgs~DgtI~vWdi~~~~-~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~ 932 (1094)
.+..+ .++ |. ..-++.-.+|.+.|+|-..+. .......-|..+|..+. +.+.+..+.+....|-+..|
T Consensus 100 ~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~-------y~qa~Ds~vSiD~~gmVEyW 171 (558)
T KOG0882|consen 100 FAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIR-------YNQAGDSAVSIDISGMVEYW 171 (558)
T ss_pred ceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEE-------eeccccceeeccccceeEee
Confidence 22221 122 11 222333457889999976653 23333444677888877 66666666666656666666
Q ss_pred cCC---------------------------CCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccc---------
Q 001349 933 NSS---------------------------KYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGH--------- 974 (1094)
Q Consensus 933 ~~~---------------------------~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~--------- 974 (1094)
... ....++.+++ ..+.+-+.|..|++++.++|+....+.-.
T Consensus 172 s~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~k 251 (558)
T KOG0882|consen 172 SAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPK 251 (558)
T ss_pred cCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccc
Confidence 532 3456777765 45788889999999999998866433211
Q ss_pred -----------------eeecCCC-CCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec
Q 001349 975 -----------------RKLLGKA-NPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP 1021 (1094)
Q Consensus 975 -----------------~~~~~h~-~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~ 1021 (1094)
+.+..|. ..-+.+.|+..+.++.-++.=| |++.++.++.+++.+.
T Consensus 252 s~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g--ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 252 SPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG--IKVINLDTNTVVRILG 314 (558)
T ss_pred cccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee--EEEEEeecCeEEEEec
Confidence 0111232 2345677888888988887765 9999999998887764
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.022 Score=62.62 Aligned_cols=199 Identities=14% Similarity=0.132 Sum_probs=109.0
Q ss_pred EEEeCC--EEEEE-----ECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeC-------CCc------
Q 001349 819 IACFRD--KIFSG-----HSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSL-------DKT------ 878 (1094)
Q Consensus 819 l~fspd--~LaSg-----s~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~-------Dgt------ 878 (1094)
-.||+| +|++. +..|.|-|||... .+..+.++..|.-.-..+.+.|||+.|+.+-. .|.
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~-~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~ 134 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAAR-GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLD 134 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcC-CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence 468886 66665 4468999999993 34788888888877888999999988877632 111
Q ss_pred -----EEEEECCCCceEEEE-e--cccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEE
Q 001349 879 -----ARVWSIGNEEIHCVQ-V--HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYC 950 (1094)
Q Consensus 879 -----I~vWdi~~~~~~~~~-~--~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~s 950 (1094)
+..-|..+|++.... . ..+...+..++ +.++|..+...-+.|.-. . .+-.++.
T Consensus 135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa-------~~~~G~V~~a~Q~qg~~~-----~-------~~PLva~ 195 (305)
T PF07433_consen 135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLA-------VDGDGTVAFAMQYQGDPG-----D-------APPLVAL 195 (305)
T ss_pred hcCCceEEEecCCCceeeeeecCccccccceeeEE-------ecCCCcEEEEEecCCCCC-----c-------cCCeEEE
Confidence 222223333211110 0 11122233333 333332221111111000 0 0001122
Q ss_pred EEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEE
Q 001349 951 GCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMV 1030 (1094)
Q Consensus 951 gs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~ 1030 (1094)
-..++.++..+.... ....-...+-+|++++++.+++.+++-|+.+.+||..++..+....- ..+..++
T Consensus 196 ~~~g~~~~~~~~p~~----------~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-~D~cGva 264 (305)
T PF07433_consen 196 HRRGGALRLLPAPEE----------QWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL-PDACGVA 264 (305)
T ss_pred EcCCCcceeccCChH----------HHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc-Cceeeee
Confidence 222222222222211 12233457889999999998888888888999999999988876543 2355666
Q ss_pred EeCCEEEEEEcCCeEEEE
Q 001349 1031 VSSELVYLGCKGGTVEIW 1048 (1094)
Q Consensus 1031 ~spd~l~sgs~dg~I~vw 1048 (1094)
..++.++..+..|.+...
T Consensus 265 ~~~~~f~~ssG~G~~~~~ 282 (305)
T PF07433_consen 265 PTDDGFLVSSGQGQLIRL 282 (305)
T ss_pred ecCCceEEeCCCccEEEc
Confidence 666655555555554333
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.013 Score=73.19 Aligned_cols=230 Identities=13% Similarity=0.121 Sum_probs=125.8
Q ss_pred CCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc--
Q 001349 813 NGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE-- 888 (1094)
Q Consensus 813 ~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~-- 888 (1094)
.+.|.++.|..+ .++.+..+|.|.+-|..+..+..+. .-.+.|.+++||||++.++..+.++++.+-+-.-.-
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg---~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVG---NVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeee---eccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchh
Confidence 468999999875 8888899999999999887444333 346789999999999999999998888765432100
Q ss_pred eEEE-EecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEE---EcCCCCceEEEEeC-CE-EEE----EEcC-CeE
Q 001349 889 IHCV-QVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL---LNSSKYPKCLALVQ-GK-VYC----GCQD-GAI 957 (1094)
Q Consensus 889 ~~~~-~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l---~~~~~~v~~l~~s~-~~-l~s----gs~D-g~I 957 (1094)
.+.+ ......+....+-|......|.-.+-..+....--.-+. ......-.++.|-+ |. +++ .-.+ ..|
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI 224 (1265)
T ss_pred ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence 0011 000011122222222222222211100000000000000 00112223455543 32 332 1233 789
Q ss_pred EEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECC--CCEEEEEECCCCeEEEE----ecC-CCCEEEEE
Q 001349 958 QEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLD--GAAVKMWSTSNYNMVGS----LPT-LSEVRAMV 1030 (1094)
Q Consensus 958 ~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~D--g~~I~iwd~~~~~~~~~----~~~-~~~v~~l~ 1030 (1094)
++||-. |....+- ....+.-.+++|-|.|..+++...+ +..|.+|.-+ |-.-.. ++- ...+..++
T Consensus 225 rV~drE-g~Lns~s------e~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~ve~L~ 296 (1265)
T KOG1920|consen 225 RVYDRE-GALNSTS------EPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEVEELA 296 (1265)
T ss_pred EEeccc-chhhccc------CcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcccccchheee
Confidence 999976 5443211 1112334578999999888886432 2368888753 333332 332 33489999
Q ss_pred EeCC--EEEE---EEcCCeEEEEECCCC
Q 001349 1031 VSSE--LVYL---GCKGGTVEIWDQKRQ 1053 (1094)
Q Consensus 1031 ~spd--~l~s---gs~dg~I~vwd~~t~ 1053 (1094)
|+.+ .+++ ......|++|-+.+.
T Consensus 297 Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 297 WNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ecCCCCceeeeecccccceEEEEEecCe
Confidence 9887 4544 334455999987764
|
|
| >KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.53 E-value=3.3e-05 Score=81.44 Aligned_cols=47 Identities=19% Similarity=0.347 Sum_probs=41.5
Q ss_pred ceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCC
Q 001349 163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSS 210 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~ 210 (1094)
.|.|-||.+.|.+||++.|||+||..|-...+.. ...|++|.+....
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQTHG 287 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhcccccc-CCcceeccccccc
Confidence 4789999999999999999999999999888776 3479999987654
|
|
| >COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=4.2e-05 Score=75.18 Aligned_cols=47 Identities=17% Similarity=0.411 Sum_probs=40.5
Q ss_pred ceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCC
Q 001349 163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSS 210 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~ 210 (1094)
.|.|-||..-++.||++.|||.||..|..+-... ...|-+|++....
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t~G 242 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKATYG 242 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhhcc
Confidence 4999999999999999999999999998876665 3479999986543
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0045 Score=67.22 Aligned_cols=186 Identities=11% Similarity=0.198 Sum_probs=131.6
Q ss_pred HhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCChHHHHHh
Q 001349 315 INGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTLIEM 390 (1094)
Q Consensus 315 ~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~~~~~~~ 390 (1094)
++-++.+|-.+.|+-+++.+..+|.+...... .+.+.+.-|.++.+..+|... ...|..+|.+|+...+|...|
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~--nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~I 91 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPF--NQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQI 91 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccChh--HHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHH
Confidence 45577788888999999999999999855432 445555667899999999887 567888999999999999999
Q ss_pred hhh-HHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHH
Q 001349 391 DMM-ESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGIL 469 (1094)
Q Consensus 391 ~~~-~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l 469 (1094)
+.. +.++..+-+..-+. .-+.+++.+|.+| +....+...+ .+.++-++.+|..|+..-|..+-.+|
T Consensus 92 k~~i~~Vc~~~~s~~lns-----~~Q~agLrlL~nL------tv~~~~~~~l--~~~i~~ll~LL~~G~~~~k~~vLk~L 158 (254)
T PF04826_consen 92 KMYIPQVCEETVSSPLNS-----EVQLAGLRLLTNL------TVTNDYHHML--ANYIPDLLSLLSSGSEKTKVQVLKVL 158 (254)
T ss_pred HHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHcc------CCCcchhhhH--HhhHHHHHHHHHcCChHHHHHHHHHH
Confidence 865 55555444431110 1256777777766 2222222223 24789999999999999999988865
Q ss_pred HHHhhccCcchhhHhhhcCchhHHHHHHhcCCch-hHHHHHHHHHHHh
Q 001349 470 LRCMQEDGKCRNSIADKAELAPVMESFMAASDGE-RFEIVCFLSELVK 516 (1094)
Q Consensus 470 ~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~l~el~~ 516 (1094)
+ ++..+......+..+..+++|+.|+.+...++ -..++.++..+..
T Consensus 159 ~-nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 159 V-NLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred H-HhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 5 45666665555555568899999999876555 4456777766633
|
|
| >KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.49 E-value=9.4e-05 Score=77.20 Aligned_cols=47 Identities=19% Similarity=0.351 Sum_probs=39.1
Q ss_pred ceeccCccccccCcEEc-CCcccccHHhHHHHHH-hCCCCCCCCCcCCC
Q 001349 163 DFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIE-RGNSSCPITRQKLS 209 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~-~cGhtfc~~ci~~~~~-~~~~~CP~c~~~~~ 209 (1094)
+-.||+|++.=..|.+. +|||.||+.||.+-.. ....+||.|+....
T Consensus 239 ~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 239 DTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 78899999999999987 6999999999998443 22457999997654
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.075 Score=59.02 Aligned_cols=228 Identities=16% Similarity=0.182 Sum_probs=128.0
Q ss_pred EeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEE-------
Q 001349 821 CFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQ------- 893 (1094)
Q Consensus 821 fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~------- 893 (1094)
-..+.|+.|+.+| +.+++..... ...... +...|..+...|+-+.+++-++ +++.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~-~~~~i~--~~~~I~ql~vl~~~~~llvLsd-~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPS-KPTRIL--KLSSITQLSVLPELNLLLVLSD-GQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCc-cceeEe--ecceEEEEEEecccCEEEEEcC-CccEEEEchhhccccccccccccc
Confidence 3446899999999 8999983221 222222 3334999999998777777664 99999998764311100
Q ss_pred ------ecccCccceeee----ecCceEEEeeCCCeEEEEEeCC-------eEEEEcCCCCceEEEEeCCEEEEEEcCCe
Q 001349 894 ------VHDIKDQIQNLA----VSNSILCFIPQGAGIKVHLRNG-------KTKLLNSSKYPKCLALVQGKVYCGCQDGA 956 (1094)
Q Consensus 894 ------~~~~~~~V~~v~----~~~~~~~fspdg~~l~~~~~~g-------~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~ 956 (1094)
.......+...+ .......+....+.+.+..+.. ..+-+.....+.++.|.++.+++|..++
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~- 158 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKG- 158 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCc-
Confidence 001111111111 0000000111111222222221 1122334567888888888888888655
Q ss_pred EEEEECCCCceeEEecccee------ecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEE--EecCCCCEEE
Q 001349 957 IQEIDLATGTFATIQTGHRK------LLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVG--SLPTLSEVRA 1028 (1094)
Q Consensus 957 I~iwDl~~~~~~~~~~~~~~------~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~--~~~~~~~v~~ 1028 (1094)
..+.|+.++........... ......++..+.... +.++++. + .+-+|=-..|++.+ .+.-...+.+
T Consensus 159 f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~Ll~~--~--~~g~fv~~~G~~~r~~~i~W~~~p~~ 233 (275)
T PF00780_consen 159 FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSD-NEFLLCY--D--NIGVFVNKNGEPSRKSTIQWSSAPQS 233 (275)
T ss_pred eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCC-ceEEEEe--c--ceEEEEcCCCCcCcccEEEcCCchhE
Confidence 78889998776544321110 011123444444443 4566654 2 23344334555444 3444567788
Q ss_pred EEEeCCEEEEEEcCCeEEEEECCCCcEEEEec
Q 001349 1029 MVVSSELVYLGCKGGTVEIWDQKRQIRIETLQ 1060 (1094)
Q Consensus 1029 l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~ 1060 (1094)
+++...++++.+.+ .|.||++.+++.++++.
T Consensus 234 ~~~~~pyli~~~~~-~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 234 VAYSSPYLIAFSSN-SIEVRSLETGELVQTIP 264 (275)
T ss_pred EEEECCEEEEECCC-EEEEEECcCCcEEEEEE
Confidence 88888887776664 59999999999999884
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0042 Score=74.16 Aligned_cols=176 Identities=8% Similarity=0.055 Sum_probs=114.9
Q ss_pred cccCcEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEE
Q 001349 782 AFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGL 861 (1094)
Q Consensus 782 ~~d~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv 861 (1094)
...+..++.|..+|.|++.+..........|... .-.+.+++||+.||+|.|-.+.+. ....++ ....++.+|
T Consensus 46 av~~~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~--~~~~~~-df~rpiksi 118 (846)
T KOG2066|consen 46 AVHDKFFALGTHRGAVYLTTCQGNPKTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTD--DEITQY-DFKRPIKSI 118 (846)
T ss_pred HhhcceeeeccccceEEEEecCCccccccccccc----ccCCceEEEecCCCcEEEeeccCC--ccceeE-ecCCcceeE
Confidence 3447899999999999999987433555555444 222349999999999999998887 333333 245789999
Q ss_pred EEecC-----CCEEEEEeCCCcEEEEECCC-CceEEEEecccCccceeeeecCceEEEeeCC-CeEEEEEeCCeEEEEc-
Q 001349 862 AILQS-----GEMLYSGSLDKTARVWSIGN-EEIHCVQVHDIKDQIQNLAVSNSILCFIPQG-AGIKVHLRNGKTKLLN- 933 (1094)
Q Consensus 862 ~fspd-----g~~LaSgs~DgtI~vWdi~~-~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg-~~l~~~~~~g~i~l~~- 933 (1094)
+++|| .+.+++||.-| +.++.-+- |....+......++|.++.|.++.++|..|- -.+.-...+..+....
T Consensus 119 al~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~lIAWand~Gv~vyd~~~~~~l~~i~~ 197 (846)
T KOG2066|consen 119 ALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNLIAWANDDGVKVYDTPTRQRLTNIPP 197 (846)
T ss_pred EeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCcEEEEecCCCcEEEeccccceeeccCC
Confidence 99997 57899999988 76665321 1123334566788999999888887776543 2221111111121111
Q ss_pred ------CCCCceEEEEeCCEEEEEEcCCeEEEEECCCC
Q 001349 934 ------SSKYPKCLALVQGKVYCGCQDGAIQEIDLATG 965 (1094)
Q Consensus 934 ------~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~ 965 (1094)
.......+.|.+...++-+...+|++..++.+
T Consensus 198 p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 198 PSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIKKR 235 (846)
T ss_pred CCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEecc
Confidence 12345667777655555556678888888733
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.045 Score=64.58 Aligned_cols=215 Identities=9% Similarity=0.022 Sum_probs=112.8
Q ss_pred EEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCe
Q 001349 849 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 928 (1094)
Q Consensus 849 ~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~ 928 (1094)
+.+....-....+.++|+|++++. +.||...|+...... .... +.- ...+|.+.++ .++...++.
T Consensus 26 k~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r--~k~~----G~g-------~~~vw~~~n~-yAv~~~~~~ 90 (443)
T PF04053_consen 26 KELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWR--NKAF----GSG-------LSFVWSSRNR-YAVLESSST 90 (443)
T ss_dssp EEEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTE--EEEE----EE--------SEEEE-TSSE-EEEE-TTS-
T ss_pred ccCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCc--cccc----Cce-------eEEEEecCcc-EEEEECCCe
Confidence 334344556789999999999888 556778888744321 1111 111 1233777444 566666777
Q ss_pred EEEEc-CCC--------CceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEE
Q 001349 929 TKLLN-SSK--------YPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAST 999 (1094)
Q Consensus 929 i~l~~-~~~--------~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~ 999 (1094)
+.++. ... ...+-...+|.++....++.|.+||+.+++.+.... . .+|..+.|++++.+++-.
T Consensus 91 I~I~kn~~~~~~k~i~~~~~~~~If~G~LL~~~~~~~i~~yDw~~~~~i~~i~------v--~~vk~V~Ws~~g~~val~ 162 (443)
T PF04053_consen 91 IKIYKNFKNEVVKSIKLPFSVEKIFGGNLLGVKSSDFICFYDWETGKLIRRID------V--SAVKYVIWSDDGELVALV 162 (443)
T ss_dssp EEEEETTEE-TT-----SS-EEEEE-SSSEEEEETTEEEEE-TTT--EEEEES------S---E-EEEEE-TTSSEEEEE
T ss_pred EEEEEcCccccceEEcCCcccceEEcCcEEEEECCCCEEEEEhhHcceeeEEe------c--CCCcEEEEECCCCEEEEE
Confidence 87753 211 111222223666666667799999999999884332 1 248999999999999888
Q ss_pred ECCCCEEEEEECCCC-----------eEEEEecC-CCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcce
Q 001349 1000 SLDGAAVKMWSTSNY-----------NMVGSLPT-LSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKV 1067 (1094)
Q Consensus 1000 s~Dg~~I~iwd~~~~-----------~~~~~~~~-~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I 1067 (1094)
+.+ .+.|++.... .....+.. ...|.+..|..|.++-.+.. .++.+--.....+..+ ..++
T Consensus 163 t~~--~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~lkYl~~Ge~~~i~~l----d~~~ 235 (443)
T PF04053_consen 163 TKD--SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HLKYLVNGETGIIAHL----DKPL 235 (443)
T ss_dssp -S---SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EEEEEETTEEEEEEE-----SS--
T ss_pred eCC--eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcCEEEEEcCC-eEEEEEcCCcceEEEc----CCce
Confidence 766 5777775432 02223332 66788888888843333333 6665322222223333 3356
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1068 QCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1068 ~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
.=+.+.+..+.++....|+.|..+.+
T Consensus 236 yllgy~~~~~~ly~~Dr~~~v~~~~l 261 (443)
T PF04053_consen 236 YLLGYLPKENRLYLIDRDGNVISYEL 261 (443)
T ss_dssp EEEEEETTTTEEEEE-TT--EEEEE-
T ss_pred EEEEEEccCCEEEEEECCCCEEEEEE
Confidence 67778887788999999999988765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.065 Score=56.28 Aligned_cols=102 Identities=10% Similarity=-0.034 Sum_probs=62.1
Q ss_pred cCcEEEEeeCCCCeEEEeCCcceeecc-cCCCcE---EEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeE
Q 001349 784 EMVKVLSNGHDSSADFWNHRELVHVDS-SENGKV---LSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVT 859 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~~~~~~~~-~h~~~V---~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~ 859 (1094)
-|+.++.|.+.|.+.+-+.++..+... .-.+.| -.++|+...+..|+.|++.+.-|..+. .++...+...+...
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~--~cVykskcgG~~f~ 139 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTY--GCVYKSKCGGGTFV 139 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEeccccc--ceEEecccCCceec
Confidence 367789999999998877764321111 111122 234555669999999999999999987 67777654443333
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001349 860 GLAILQSGEMLYSGSLDKTARVWSIGNE 887 (1094)
Q Consensus 860 sv~fspdg~~LaSgs~DgtI~vWdi~~~ 887 (1094)
+-++.|-...|+.+...|.|.--..+++
T Consensus 140 sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 140 SPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred cceecCCCceEEEEeccceEEEEccCCC
Confidence 4445552233444444555555455544
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.004 Score=68.79 Aligned_cols=245 Identities=12% Similarity=0.103 Sum_probs=130.4
Q ss_pred hhccccccccccCc-EEEEeeCCCCeEEEeCCc--ceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcce
Q 001349 773 RELRKYSPLAFEMV-KVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILH 846 (1094)
Q Consensus 773 ~~~~~~~~~~~d~~-~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~ 846 (1094)
..+++...+++... .+..++.+.+|+|.|+.+ ....+..| ..+++++|.-| +|+.|...|.|.|||+...+ .
T Consensus 193 g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~-~ 270 (463)
T KOG1645|consen 193 GSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE-G 270 (463)
T ss_pred chhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC-c
Confidence 34455556776666 788899999999999983 34444455 88999999865 99999999999999998653 2
Q ss_pred eEEEecc--cCCCeEEEEE------ecCCCEEEEEeCCCcEEEEECCCCc--eEEEEecccCccceeeeecCceEEEeeC
Q 001349 847 LIQQIRE--HTKAVTGLAI------LQSGEMLYSGSLDKTARVWSIGNEE--IHCVQVHDIKDQIQNLAVSNSILCFIPQ 916 (1094)
Q Consensus 847 ~~~~l~~--H~~~V~sv~f------spdg~~LaSgs~DgtI~vWdi~~~~--~~~~~~~~~~~~V~~v~~~~~~~~fspd 916 (1094)
.+..+.+ ...+|..++. .+.|.+++..+.+ ...|.+.... ..++...+..+...++. +.+-
T Consensus 271 ~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismq-------y~~~ 341 (463)
T KOG1645|consen 271 PLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQ-------YHGV 341 (463)
T ss_pred hHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeee-------ecCc
Confidence 2333322 2234444333 2334455544443 5567665432 12222222222222222 2332
Q ss_pred CCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEec----cceeecCCCCCeEEEEEeCC
Q 001349 917 GAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQT----GHRKLLGKANPVHALQVHNG 992 (1094)
Q Consensus 917 g~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~----~~~~~~~h~~~V~sl~fs~~ 992 (1094)
.+.+++..... ..-..+. .+.+. -|-.+|..+.... +...-.-++.. .+.-.++
T Consensus 342 snh~l~tyRs~--------pn~p~~r-----~il~~-------~d~~dG~pVc~~r~~~~Gs~~~kl~t~~--ai~~~~~ 399 (463)
T KOG1645|consen 342 SNHLLLTYRSN--------PNFPQSR-----FILGR-------IDFRDGFPVCGKRRTYFGSKQTKLSTTQ--AIRAVED 399 (463)
T ss_pred cceEEEEecCC--------CCCccce-----eeeee-------eccccCceeeeecccccCCccccccccc--ceecccc
Confidence 34433332221 1000110 11111 1112222221100 00000001111 1112345
Q ss_pred ccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC----EEEEEEcCCeEEEEECC
Q 001349 993 LVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE----LVYLGCKGGTVEIWDQK 1051 (1094)
Q Consensus 993 ~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd----~l~sgs~dg~I~vwd~~ 1051 (1094)
..+++..+.+-+.+.+||..+++.++++....+|..+....- ++++-. |..++||..+
T Consensus 400 nn~iv~~gd~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 400 NNYIVVVGDSTNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred ccEEEEecCCcceeEEeccchhheeeecccCcceeecceeecCCcchhhhee-cceEEEEecC
Confidence 566666665667999999999999999998888877766532 454444 5567777654
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.053 Score=62.73 Aligned_cols=272 Identities=10% Similarity=0.043 Sum_probs=128.8
Q ss_pred CCCCeEEEeCCcce-eecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEeccc---------------
Q 001349 793 HDSSADFWNHRELV-HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREH--------------- 854 (1094)
Q Consensus 793 ~dg~I~vWd~~~~~-~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H--------------- 854 (1094)
..+.+.+||+.+.. ..+......+....|||+ .++-. .++.|.+++..++....+ +..|-
T Consensus 21 ~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~l-T~dg~~~i~nG~~dwvyeEE 98 (353)
T PF00930_consen 21 FKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQL-TTDGEPGIYNGVPDWVYEEE 98 (353)
T ss_dssp EEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEES-ES--TTTEEESB--HHHHHH
T ss_pred cceeEEEEecCCCceEECcCCccccccceeecCCCeeEEE-ecCceEEEECCCCCeEEe-ccccceeEEcCccceecccc
Confidence 34567788887432 223333578899999997 54444 468999999887732211 11220
Q ss_pred -CCCeEEEEEecCCCEEEEEeCC-CcEEEEEC---CCCc-----eEEEEecccCccceeeeecCceEEEeeCCCeEEEEE
Q 001349 855 -TKAVTGLAILQSGEMLYSGSLD-KTARVWSI---GNEE-----IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHL 924 (1094)
Q Consensus 855 -~~~V~sv~fspdg~~LaSgs~D-gtI~vWdi---~~~~-----~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~ 924 (1094)
-+.-..+-|||||++|+....| ..|+.+.+ .... ...+.-.....+...+. ..++..
T Consensus 99 v~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~-------------l~v~~~ 165 (353)
T PF00930_consen 99 VFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVS-------------LFVVDL 165 (353)
T ss_dssp TSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEE-------------EEEEES
T ss_pred ccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceE-------------EEEEEC
Confidence 1123567899999999877654 33443332 2211 11111100011111111 111111
Q ss_pred eCCeE---EEE----cCCCCceEEEEeC-CE-EEEEEcC-----CeEEEEECCCCceeEEeccceeecCCCCCeEEEEEe
Q 001349 925 RNGKT---KLL----NSSKYPKCLALVQ-GK-VYCGCQD-----GAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVH 990 (1094)
Q Consensus 925 ~~g~i---~l~----~~~~~v~~l~~s~-~~-l~sgs~D-----g~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs 990 (1094)
..+.+ .+. .....+..+.|.+ +. +++.-.+ ..+.++|..++....... ....+.-..-....|.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~--e~~~~Wv~~~~~~~~~ 243 (353)
T PF00930_consen 166 ASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLE--ETSDGWVDVYDPPHFL 243 (353)
T ss_dssp SSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEE--EESSSSSSSSSEEEE-
T ss_pred CCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEE--ecCCcceeeecccccc
Confidence 11111 111 1123345555542 33 3333222 236667877766543332 1111222223345554
Q ss_pred -C-CccEEEEEECCC-CEEEEEECCCCeEEEEec-CCCCEEE-EEEeCC---EEEEEEcC----CeEEEEECCCCcEEEE
Q 001349 991 -N-GLVYTASTSLDG-AAVKMWSTSNYNMVGSLP-TLSEVRA-MVVSSE---LVYLGCKG----GTVEIWDQKRQIRIET 1058 (1094)
Q Consensus 991 -~-~~~~las~s~Dg-~~I~iwd~~~~~~~~~~~-~~~~v~~-l~~spd---~l~sgs~d----g~I~vwd~~t~~~~~~ 1058 (1094)
+ +..++.....+| ..|.+++...+.. +.+. +.-.|.. +.++++ ..+++..+ ..|+.-++..+..+..
T Consensus 244 ~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~ 322 (353)
T PF00930_consen 244 GPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKC 322 (353)
T ss_dssp TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEE
T ss_pred cCCCCEEEEEEEcCCCcEEEEEcccccce-eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEe
Confidence 3 344444444554 2566667666654 3555 5555644 566766 45555543 3566667773445566
Q ss_pred ecccCCcceEEEEEcCCCCEEEEEe
Q 001349 1059 LQTGTSGKVQCMALDDNEEFLVIGT 1083 (1094)
Q Consensus 1059 l~~~h~~~I~~l~~Spdg~~L~sgs 1083 (1094)
+. ...+.-..+.|||+|++++-..
T Consensus 323 LT-~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 323 LT-CEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp SS-TTSSTTEEEEE-TTSSEEEEEE
T ss_pred cc-CCCCCceEEEECCCCCEEEEEE
Confidence 63 2222226999999999887443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.33 E-value=7.6e-05 Score=90.66 Aligned_cols=46 Identities=28% Similarity=0.661 Sum_probs=41.8
Q ss_pred CceeccCccccccC-----cEEcCCcccccHHhHHHHHHhCCCCCCCCCcCC
Q 001349 162 KDFVCPITTHIFDD-----PVTLETGQTYERRAIQEWIERGNSSCPITRQKL 208 (1094)
Q Consensus 162 ~~~~CpIc~~~~~d-----Pv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~ 208 (1094)
.+-.|+||.+.|.. |-.++|||.|+..|+..|+++ ..+||.||..+
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhh
Confidence 37899999999999 788999999999999999999 66899999844
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00015 Score=86.06 Aligned_cols=191 Identities=12% Similarity=0.153 Sum_probs=122.8
Q ss_pred eeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEe
Q 001349 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR 925 (1094)
Q Consensus 846 ~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~ 925 (1094)
+..++|..|+...+|++|+-+.++|+.|+..|.|+++++.+|. ..-....|.++|+.+. -+.||...
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~-~e~s~ncH~SavT~ve-------Ps~dgs~~----- 1158 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS-MEESVNCHQSAVTLVE-------PSVDGSTQ----- 1158 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc-cccccccccccccccc-------ccCCccee-----
Confidence 4567788899999999999999999999999999999999985 2223334566666665 45555542
Q ss_pred CCeEEEEcCCCCceEEEEeCCEEEEEEcC-CeEEEEECCC-CceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC
Q 001349 926 NGKTKLLNSSKYPKCLALVQGKVYCGCQD-GAIQEIDLAT-GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG 1003 (1094)
Q Consensus 926 ~g~i~l~~~~~~v~~l~~s~~~l~sgs~D-g~I~iwDl~~-~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg 1003 (1094)
+.+.+.. --..+|++.. +... +.+ ..-.++.|+.....-+.|...+
T Consensus 1159 ----------------------Ltsss~S~PlsaLW~~~s~~~~~------Hsf----~ed~~vkFsn~~q~r~~gt~~d 1206 (1516)
T KOG1832|consen 1159 ----------------------LTSSSSSSPLSALWDASSTGGPR------HSF----DEDKAVKFSNSLQFRALGTEAD 1206 (1516)
T ss_pred ----------------------eeeccccCchHHHhccccccCcc------ccc----cccceeehhhhHHHHHhccccc
Confidence 2222222 2456788754 2222 122 2345788876544433333333
Q ss_pred CEEEEEECCCCeEEEEe-cC----CCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCC
Q 001349 1004 AAVKMWSTSNYNMVGSL-PT----LSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE 1077 (1094)
Q Consensus 1004 ~~I~iwd~~~~~~~~~~-~~----~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~ 1077 (1094)
...+||+.++.++.++ .. ...-+...|+|+ .++. .|| .+||++..+.++.|. .....+ .-.|+|.|.
T Consensus 1207 -~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--ndG--vLWDvR~~~aIh~FD-~ft~~~-~G~FHP~g~ 1279 (1516)
T KOG1832|consen 1207 -DALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--NDG--VLWDVRIPEAIHRFD-QFTDYG-GGGFHPSGN 1279 (1516)
T ss_pred -ceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe--eCc--eeeeeccHHHHhhhh-hheecc-cccccCCCc
Confidence 7999999998877663 21 222367788887 3332 345 479999888777773 222222 234899998
Q ss_pred EEEEEeCCCcEEEEeC
Q 001349 1078 FLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1078 ~L~sgs~DG~I~iWdl 1093 (1094)
-++.-+ .|||+
T Consensus 1280 eVIINS-----EIwD~ 1290 (1516)
T KOG1832|consen 1280 EVIINS-----EIWDM 1290 (1516)
T ss_pred eEEeec-----hhhhh
Confidence 888766 36765
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.003 Score=73.59 Aligned_cols=74 Identities=16% Similarity=0.208 Sum_probs=62.6
Q ss_pred cCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 001349 811 SENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE 888 (1094)
Q Consensus 811 ~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~ 888 (1094)
.....|.|++++|+ .++.|+.||+|.+||...+. ..+..+.-..+.++|+|+|..+++|+..|.+.+||+.-+.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~----t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV----TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe----eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 56789999999995 99999999999999998772 2222345567899999999999999999999999997754
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.13 Score=59.93 Aligned_cols=271 Identities=10% Similarity=0.070 Sum_probs=122.6
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCC-------cceeEEE
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGS-------ILHLIQQ 850 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~-------~~~~~~~ 850 (1094)
...++++..-++.|-..|.|.||.+......-......-....|.+ ....++.-.+-|+... .+.+..-
T Consensus 6 ~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 6 HVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRR----FSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp EEEEETTTTEEEEEETTS-EEEEEEEE------------------S------GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred EEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCccccc----ccccCCCcceEEehhhCCcccccccCchhh
Confidence 3445566667777777888888777632111100000111111111 0001111122233211 1344555
Q ss_pred ecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEeccc-------CccceeeeecCceEEEeeCCCeEEEE
Q 001349 851 IREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDI-------KDQIQNLAVSNSILCFIPQGAGIKVH 923 (1094)
Q Consensus 851 l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~-------~~~V~~v~~~~~~~~fspdg~~l~~~ 923 (1094)
++...+.|++++.| |=-+++.|..+|++.|.|++............ ...+.++. |+. ...
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ie-------F~v-----m~~ 148 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIE-------FSV-----MTL 148 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEE-------EEE-----EE-
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEE-------EEE-----Eec
Confidence 56668999999997 55699999999999999998865322221111 11222332 210 000
Q ss_pred EeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECC--C-CceeEEeccceeecCCCCCeEEEEE-eCC-------
Q 001349 924 LRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA--T-GTFATIQTGHRKLLGKANPVHALQV-HNG------- 992 (1094)
Q Consensus 924 ~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~--~-~~~~~~~~~~~~~~~h~~~V~sl~f-s~~------- 992 (1094)
..|+...+ .+++|+..|.+.+|.+. . +.....+. .....+.++|..+.. +.+
T Consensus 149 ~~D~ySSi---------------~L~vGTn~G~v~~fkIlp~~~g~f~v~~~--~~~~~~~~~i~~I~~i~~~~G~~a~A 211 (395)
T PF08596_consen 149 GGDGYSSI---------------CLLVGTNSGNVLTFKILPSSNGRFSVQFA--GATTNHDSPILSIIPINADTGESALA 211 (395)
T ss_dssp TTSSSEEE---------------EEEEEETTSEEEEEEEEE-GGG-EEEEEE--EEE--SS----EEEEEETTT--B-B-
T ss_pred CCCcccce---------------EEEEEeCCCCEEEEEEecCCCCceEEEEe--eccccCCCceEEEEEEECCCCCcccC
Confidence 00111100 37788888888888664 1 22221111 111234455555442 211
Q ss_pred --------------ccEEEEEECCCCEEEEEECCCCeEEEEecCC-CCEEEEEEe-------CCEEEEEEcCCeEEEEEC
Q 001349 993 --------------LVYTASTSLDGAAVKMWSTSNYNMVGSLPTL-SEVRAMVVS-------SELVYLGCKGGTVEIWDQ 1050 (1094)
Q Consensus 993 --------------~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~-~~v~~l~~s-------pd~l~sgs~dg~I~vwd~ 1050 (1094)
.-+++.++. +.++++...+.+........ .....+.+- ...|++-..+|.|++|.+
T Consensus 212 t~~~~~~l~~g~~i~g~vVvvSe--~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL 289 (395)
T PF08596_consen 212 TISAMQGLSKGISIPGYVVVVSE--SDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL 289 (395)
T ss_dssp BHHHHHGGGGT----EEEEEE-S--SEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET
T ss_pred chhHhhccccCCCcCcEEEEEcc--cceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEEC
Confidence 114444443 47999999887766554422 222333342 116788889999999999
Q ss_pred CCCcEEEEeccc---CCcceEEEEEcCCCCEEEEEeC
Q 001349 1051 KRQIRIETLQTG---TSGKVQCMALDDNEEFLVIGTS 1084 (1094)
Q Consensus 1051 ~t~~~~~~l~~~---h~~~I~~l~~Spdg~~L~sgs~ 1084 (1094)
..-+.+..+... +...+....++++|+.++-.+.
T Consensus 290 P~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 290 PSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp TT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SS
T ss_pred CCchHhhcccCCCccccccccccEECCCCCEEEEeCc
Confidence 998888777422 1224566778999997766554
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.019 Score=68.68 Aligned_cols=203 Identities=9% Similarity=0.005 Sum_probs=118.5
Q ss_pred EecCCCEEEEEe-CCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeC----CeEEEEcCCCC
Q 001349 863 ILQSGEMLYSGS-LDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRN----GKTKLLNSSKY 937 (1094)
Q Consensus 863 fspdg~~LaSgs-~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~----g~i~l~~~~~~ 937 (1094)
++|||+.+...+ ..+.+.+.|..+.+ .......... +..+.++++|+++.+.+.+ .++...+....
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etme--V~~qV~Vdgn-------pd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~ 270 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETME--VAWQVMVDGN-------LDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER 270 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccce--EEEEEEeCCC-------cccceECCCCCEEEEeccCcccCcceeeeccccC
Confidence 345665443322 24556666766543 1111111222 2334589999998888643 23344443333
Q ss_pred ceEEEEe---------CCE-EEEEEcCCeEEEEECCC----C-ceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECC
Q 001349 938 PKCLALV---------QGK-VYCGCQDGAIQEIDLAT----G-TFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLD 1002 (1094)
Q Consensus 938 v~~l~~s---------~~~-l~sgs~Dg~I~iwDl~~----~-~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~D 1002 (1094)
-..+.|+ +|+ ... .++.|.++|.++ + ..... ..-......+.++||+.+++.++.-
T Consensus 271 d~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~y-------IPVGKsPHGV~vSPDGkylyVankl 341 (635)
T PRK02888 271 DWVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRY-------VPVPKNPHGVNTSPDGKYFIANGKL 341 (635)
T ss_pred ceEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEE-------EECCCCccceEECCCCCEEEEeCCC
Confidence 3455554 232 222 367899999988 3 33221 1223567789999999998888765
Q ss_pred CCEEEEEECCCCe------------EEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCC----------CcEEEE
Q 001349 1003 GAAVKMWSTSNYN------------MVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKR----------QIRIET 1058 (1094)
Q Consensus 1003 g~~I~iwd~~~~~------------~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t----------~~~~~~ 1058 (1094)
..+|.+.|+.+.+ .+....-+......+|+++ ...+-.-|..|..||+.+ ...+..
T Consensus 342 S~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k 421 (635)
T PRK02888 342 SPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQK 421 (635)
T ss_pred CCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceec
Confidence 5699999998755 2444444555667788887 344456789999999876 233443
Q ss_pred ec----ccCCcceEEEEEcCCCCEEEEEe
Q 001349 1059 LQ----TGTSGKVQCMALDDNEEFLVIGT 1083 (1094)
Q Consensus 1059 l~----~~h~~~I~~l~~Spdg~~L~sgs 1083 (1094)
+. .||.....+=.-.|||++|++.+
T Consensus 422 ~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 422 LDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred ccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 32 23322222223367888888764
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.013 Score=72.56 Aligned_cols=131 Identities=10% Similarity=0.159 Sum_probs=88.6
Q ss_pred EcCCeEEEEECCCCceeEEeccceeecCCC-CCeEEEEEe------CCccEEEEEECCCCEEEEEECCCC--eEEE----
Q 001349 952 CQDGAIQEIDLATGTFATIQTGHRKLLGKA-NPVHALQVH------NGLVYTASTSLDGAAVKMWSTSNY--NMVG---- 1018 (1094)
Q Consensus 952 s~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~-~~V~sl~fs------~~~~~las~s~Dg~~I~iwd~~~~--~~~~---- 1018 (1094)
.....|+-.|+..|+.+..+. .|. .+|..++-. .+...+++.+ ++.+..||.+-. +++.
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~------~~~~~~v~~~~p~~K~aqlt~e~tflGls--~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWK------VHDDIPVVDIAPDSKFAQLTNEQTFLGLS--DNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred CCCCceEEEecCCCcEEEEee------cCCCcceeEecccccccccCCCceEEEEC--CCceEEeccCCCCCceeecccc
Confidence 355778889999999885433 333 235555432 1222333333 347999999853 2332
Q ss_pred EecCCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1019 SLPTLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1019 ~~~~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
.+.....++|++.+.+ +|++|+.+|.||+||. .|+.-.+...+-..+|.+|..+.||++|++.+.. .+.+++
T Consensus 573 ~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~ 645 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLID 645 (794)
T ss_pred ccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEEE
Confidence 2235677899999988 8999999999999995 4444555545777899999999999998877644 455544
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.055 Score=67.89 Aligned_cols=228 Identities=11% Similarity=0.100 Sum_probs=133.6
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC
Q 001349 855 TKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS 934 (1094)
Q Consensus 855 ~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~ 934 (1094)
.+.|.++.|..+++-++.+..+|.|.+-|..+....+.... ...|.++. |+||+..++..+..+++.+...
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~v--d~GI~aas-------wS~Dee~l~liT~~~tll~mT~ 138 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNV--DNGISAAS-------WSPDEELLALITGRQTLLFMTK 138 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeec--cCceEEEe-------ecCCCcEEEEEeCCcEEEEEec
Confidence 36899999999999999999999999999888765554443 45566666 9999999988888777655443
Q ss_pred CCCc---eEEEEe---CCEEEEEEcCCeEEEEECCCCceeEEe-ccceeecC---CCCCeEEEEEeCCccEEEEEE---C
Q 001349 935 SKYP---KCLALV---QGKVYCGCQDGAIQEIDLATGTFATIQ-TGHRKLLG---KANPVHALQVHNGLVYTASTS---L 1001 (1094)
Q Consensus 935 ~~~v---~~l~~s---~~~l~sgs~Dg~I~iwDl~~~~~~~~~-~~~~~~~~---h~~~V~sl~fs~~~~~las~s---~ 1001 (1094)
.-.+ +.+... .+..+.++....=.-+.-..|+..... ..+.+..+ ..+.=+++.|-.||.+++... .
T Consensus 139 ~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~ 218 (1265)
T KOG1920|consen 139 DFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESE 218 (1265)
T ss_pred cccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEecc
Confidence 2111 111000 123444444332222221222111000 00001111 112335788999998887732 2
Q ss_pred CC-CEEEEEECCCCeEEEEe-cCCCCEEEEEEeCC--EEEEE---EcCCeEEEEECCCC---cEEEEecccCCcceEEEE
Q 001349 1002 DG-AAVKMWSTSNYNMVGSL-PTLSEVRAMVVSSE--LVYLG---CKGGTVEIWDQKRQ---IRIETLQTGTSGKVQCMA 1071 (1094)
Q Consensus 1002 Dg-~~I~iwd~~~~~~~~~~-~~~~~v~~l~~spd--~l~sg---s~dg~I~vwd~~t~---~~~~~l~~~h~~~I~~l~ 1071 (1094)
.| +.|++||.. |.+-.+- +..+.-.+++|-|. .+++- +.|+.|.+|..+.- .-...+ ......|..++
T Consensus 219 ~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~-p~de~~ve~L~ 296 (1265)
T KOG1920|consen 219 TGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPF-PLDEKEVEELA 296 (1265)
T ss_pred CCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCC-cccccchheee
Confidence 23 799999987 4332211 12344457888886 34432 35678999986532 111112 11223499999
Q ss_pred EcCCCCEEEE---EeCCCcEEEEeC
Q 001349 1072 LDDNEEFLVI---GTSDGRIQAWGL 1093 (1094)
Q Consensus 1072 ~Spdg~~L~s---gs~DG~I~iWdl 1093 (1094)
|+.++..|++ ......|++|-+
T Consensus 297 Wns~sdiLAv~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 297 WNSNSDILAVVTSNLENSLVQLWTT 321 (1265)
T ss_pred ecCCCCceeeeecccccceEEEEEe
Confidence 9999999987 444455999965
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.57 Score=50.51 Aligned_cols=263 Identities=11% Similarity=0.145 Sum_probs=149.4
Q ss_pred CCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEE
Q 001349 813 NGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCV 892 (1094)
Q Consensus 813 ~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~ 892 (1094)
.+-+..+.++.++.+.+..+.-++|.|+.+.....+..+-.-.+.-.++.. .|++...+..|.-.-+.|+.+.+...+
T Consensus 86 ~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~l 163 (370)
T COG5276 86 RDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQL 163 (370)
T ss_pred hhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCcee
Confidence 456677888889888888999999999988642222222112233344444 588999998666688899887542222
Q ss_pred Eec-cc-CccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC--------------CCCceEEEEeCCEEEEEEcCCe
Q 001349 893 QVH-DI-KDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS--------------SKYPKCLALVQGKVYCGCQDGA 956 (1094)
Q Consensus 893 ~~~-~~-~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~--------------~~~v~~l~~s~~~l~sgs~Dg~ 956 (1094)
... .. ......+++ .|++-.+..+++.+++.+. ...+.++..++++.+..-.+--
T Consensus 164 agrya~~~~d~~~v~I---------SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~eg 234 (370)
T COG5276 164 AGRYALPGGDTHDVAI---------SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEG 234 (370)
T ss_pred eeeeccCCCCceeEEE---------ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccc
Confidence 211 11 111133332 2444444455555555542 3367777778888777777777
Q ss_pred EEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCe---EEEEecC-CCCEEEEEEe
Q 001349 957 IQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN---MVGSLPT-LSEVRAMVVS 1032 (1094)
Q Consensus 957 I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~---~~~~~~~-~~~v~~l~~s 1032 (1094)
+.+-|..+.+....+.... ......++.+..+.+..|++-+. +-+.+-|+.+.. ....+.. +..-..+..+
T Consensus 235 vlivd~s~~ssp~~~gsye--t~~p~~~s~v~Vs~~~~Yvadga---~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay 309 (370)
T COG5276 235 VLIVDVSGPSSPTVFGSYE--TSNPVSISTVPVSGEYAYVADGA---KGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY 309 (370)
T ss_pred eEEEecCCCCCceEeeccc--cCCcccccceecccceeeeeccc---cCceeEeccCCCCCchhccccCCCccccceEEe
Confidence 7788877666443322110 01112334455566666666552 234555554322 2222322 2245566667
Q ss_pred CCEEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1033 SELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1033 pd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
.+++..+..+ +..+-|....+..... .+....+.+.+.+-+.+.+.+...+|-+.||+.
T Consensus 310 ~~y~yiadkn-~g~vV~~s~~s~m~~~-~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 310 GNYNYIADKN-TGAVVDASPPSMMDKR-PGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred cCeeEeccCC-ceEEEeCCChhhcccc-cCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 7777666655 5555565544333222 233334455555556778889999999999985
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00013 Score=84.17 Aligned_cols=197 Identities=18% Similarity=0.218 Sum_probs=122.5
Q ss_pred CCcEEEEEEeC--C--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEec-CCCEEEEEeC----CCcEEEEE
Q 001349 813 NGKVLSIACFR--D--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSL----DKTARVWS 883 (1094)
Q Consensus 813 ~~~V~~l~fsp--d--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fsp-dg~~LaSgs~----DgtI~vWd 883 (1094)
...+.|++++- + .++.|..+|.|.+-.+....-..-....+|....++++|++ |.+.||.|-+ |..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 34566776654 2 78999999999998876542222344567889999999998 6777877632 56799999
Q ss_pred CCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEe--CCEEEEEEcCCeEEEEE
Q 001349 884 IGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV--QGKVYCGCQDGAIQEID 961 (1094)
Q Consensus 884 i~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s--~~~l~sgs~Dg~I~iwD 961 (1094)
+.++-. .|..... |+. +. .+ ...++.+. ...+.+|.....++++|
T Consensus 136 i~s~lt---------vPke~~~-------fs~-~~------l~----------gqns~cwlrd~klvlaGm~sr~~~ifd 182 (783)
T KOG1008|consen 136 INSLLT---------VPKESPL-------FSS-ST------LD----------GQNSVCWLRDTKLVLAGMTSRSVHIFD 182 (783)
T ss_pred cccccC---------CCccccc-------ccc-cc------cc----------CccccccccCcchhhcccccchhhhhh
Confidence 988521 1111111 222 10 00 01122222 12377888888999999
Q ss_pred CCCCceeEEeccceeecCCCCCeEEEEEeC-CccEEEEEECCCCEEEEEEC-CC-CeEEEEecCC-----CCEEEEEEeC
Q 001349 962 LATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDGAAVKMWST-SN-YNMVGSLPTL-----SEVRAMVVSS 1033 (1094)
Q Consensus 962 l~~~~~~~~~~~~~~~~~h~~~V~sl~fs~-~~~~las~s~Dg~~I~iwd~-~~-~~~~~~~~~~-----~~v~~l~~sp 1033 (1094)
++..... ...-.+..+..+.++| ...|+++.. || .|.+||. ++ ..++..+.+. ..+..++|+|
T Consensus 183 lRqs~~~-------~~svnTk~vqG~tVdp~~~nY~cs~~-dg-~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycP 253 (783)
T KOG1008|consen 183 LRQSLDS-------VSSVNTKYVQGITVDPFSPNYFCSNS-DG-DIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCP 253 (783)
T ss_pred hhhhhhh-------hhhhhhhhcccceecCCCCCceeccc-cC-ceeeccchhhhccHHHHHhhCCCCcccceeeEEecc
Confidence 9843321 1111223566677777 667777765 65 8999994 32 2233333332 3489999999
Q ss_pred C---EEEEEEc-CCeEEEEECC
Q 001349 1034 E---LVYLGCK-GGTVEIWDQK 1051 (1094)
Q Consensus 1034 d---~l~sgs~-dg~I~vwd~~ 1051 (1094)
. .+++.+. .++|+.+|+.
T Consensus 254 trtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 254 TRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCcchhhhhccCcceEEEeccc
Confidence 7 4555554 5889999975
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.15 Score=59.48 Aligned_cols=223 Identities=12% Similarity=0.114 Sum_probs=120.2
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEE-EEe-------------cccCccceeeeecCceEEEeeCCCeEEE
Q 001349 857 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHC-VQV-------------HDIKDQIQNLAVSNSILCFIPQGAGIKV 922 (1094)
Q Consensus 857 ~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~-~~~-------------~~~~~~V~~v~~~~~~~~fspdg~~l~~ 922 (1094)
.|+.|.|+++..-|+.|...|.|-||.+..++... ... ......+..+.-. ..|+=+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r-----~~~~~~---- 73 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDR-----APPSLK---- 73 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG-------TT-S----
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhh-----CCcccc----
Confidence 58899999998899999999999999876643111 000 0011112222100 000000
Q ss_pred EEeCCe--EEEEc-CCCCceEEEEeC-CEEEEEEcCCeEEEEECCCCceeEEeccce--eecCCCCCeEEEEEe-----C
Q 001349 923 HLRNGK--TKLLN-SSKYPKCLALVQ-GKVYCGCQDGAIQEIDLATGTFATIQTGHR--KLLGKANPVHALQVH-----N 991 (1094)
Q Consensus 923 ~~~~g~--i~l~~-~~~~v~~l~~s~-~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~--~~~~h~~~V~sl~fs-----~ 991 (1094)
+|- ..+++ ..+.|.+++.++ |.+++|+.+|.+.+.|++....+....-.. .-......|+++.|. .
T Consensus 74 ---~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~ 150 (395)
T PF08596_consen 74 ---EGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGG 150 (395)
T ss_dssp ---EEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TT
T ss_pred ---cccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCC
Confidence 010 12222 357899999987 999999999999999998887775422211 111234568888885 3
Q ss_pred Cc---cEEEEEECCCCEEEEEECCC---CeE----EEEe-cCCCCEEEEE-EeC----------------------CEEE
Q 001349 992 GL---VYTASTSLDGAAVKMWSTSN---YNM----VGSL-PTLSEVRAMV-VSS----------------------ELVY 1037 (1094)
Q Consensus 992 ~~---~~las~s~Dg~~I~iwd~~~---~~~----~~~~-~~~~~v~~l~-~sp----------------------d~l~ 1037 (1094)
|+ ..+..|...| .+.+|.+-- +.. .... .+.+.+..+. ++. ..++
T Consensus 151 D~ySSi~L~vGTn~G-~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~v 229 (395)
T PF08596_consen 151 DGYSSICLLVGTNSG-NVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYV 229 (395)
T ss_dssp SSSEEEEEEEEETTS-EEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEE
T ss_pred CcccceEEEEEeCCC-CEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEE
Confidence 33 5666666665 888887641 211 1111 2445555544 221 1355
Q ss_pred EEEcCCeEEEEECCCCcEEEEecccCCcceEEEEE-----cCCCCEEEEEeCCCcEEEEeC
Q 001349 1038 LGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMAL-----DDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1038 sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~-----Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
+...+..++|+...+.+..+... ...-....+.+ ...+..|++-..+|.|+++.+
T Consensus 230 VvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL 289 (395)
T PF08596_consen 230 VVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL 289 (395)
T ss_dssp EEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET
T ss_pred EEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEEC
Confidence 56667889999999888777664 22223334445 235678889999999999986
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00038 Score=75.24 Aligned_cols=46 Identities=28% Similarity=0.648 Sum_probs=39.8
Q ss_pred CceeccCccccccCc-------------EEcCCcccccHHhHHHHHHhCCCCCCCCCcCC
Q 001349 162 KDFVCPITTHIFDDP-------------VTLETGQTYERRAIQEWIERGNSSCPITRQKL 208 (1094)
Q Consensus 162 ~~~~CpIc~~~~~dP-------------v~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~ 208 (1094)
+|-.|.||++-|..| --++|||.+=-.|+..|+++ ..+||.||.++
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~ 344 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPV 344 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCcc
Confidence 378999999985443 57899999999999999998 66999999985
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.1 Score=62.72 Aligned_cols=97 Identities=14% Similarity=0.154 Sum_probs=73.0
Q ss_pred CccEEEEEECCCCEEEEEECCC-----CeEEEEecCCCCEEEEEEeCC--EEE-EEEcCCeEEEEECCCCcE--------
Q 001349 992 GLVYTASTSLDGAAVKMWSTSN-----YNMVGSLPTLSEVRAMVVSSE--LVY-LGCKGGTVEIWDQKRQIR-------- 1055 (1094)
Q Consensus 992 ~~~~las~s~Dg~~I~iwd~~~-----~~~~~~~~~~~~v~~l~~spd--~l~-sgs~dg~I~vwd~~t~~~-------- 1055 (1094)
++.+.... ++.|.+.|..+ ...+..+.-+.....+.++|| +++ ++..+++|.|+|+.+.+.
T Consensus 287 dGK~~~V~---gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~ 363 (635)
T PRK02888 287 AGKFKTIG---GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKP 363 (635)
T ss_pred CCCEEEEC---CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCc
Confidence 45544432 35899999998 567778888889999999999 444 455689999999988552
Q ss_pred ----EEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1056 ----IETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1056 ----~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
+.....| ......+|+++|....|---|..|-.|++
T Consensus 364 ~~~vvaevevG--lGPLHTaFDg~G~aytslf~dsqv~kwn~ 403 (635)
T PRK02888 364 RDAVVAEPELG--LGPLHTAFDGRGNAYTTLFLDSQIVKWNI 403 (635)
T ss_pred cceEEEeeccC--CCcceEEECCCCCEEEeEeecceeEEEeh
Confidence 4444322 23456789999998888888999999997
|
|
| >KOG4367 consensus Predicted Zn-finger protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.00035 Score=76.52 Aligned_cols=35 Identities=11% Similarity=0.448 Sum_probs=31.5
Q ss_pred CCceeccCccccccCcEEcCCcccccHHhHHHHHH
Q 001349 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIE 195 (1094)
Q Consensus 161 ~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~ 195 (1094)
++++.||||...|+||++++|||+.|+.|-...+.
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 45899999999999999999999999999886554
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.52 Score=55.50 Aligned_cols=209 Identities=14% Similarity=0.125 Sum_probs=102.6
Q ss_pred eEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEec-c-cCccc-----eeeee
Q 001349 834 TIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVH-D-IKDQI-----QNLAV 906 (1094)
Q Consensus 834 ~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~-~-~~~~V-----~~v~~ 906 (1094)
.|+||+..+. .+..+.-..+.|.++.|+.+ ..|+....||+++++|+.... ..... . ....| ....+
T Consensus 62 ~I~iys~sG~---ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~--~fsl~~~i~~~~v~e~~i~~~~~ 135 (410)
T PF04841_consen 62 SIQIYSSSGK---LLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF--QFSLGEEIEEEKVLECRIFAIWF 135 (410)
T ss_pred EEEEECCCCC---EeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce--eechhhhccccCccccccccccc
Confidence 5999998776 44444433489999999875 556677899999999997532 11110 0 01111 11121
Q ss_pred cCceEE-EeeCCCeEEEEEeCCeEEEEcCCCCceEE---EEeC--CEEEEEEcCCeEEEEECCCCceeEEeccce-eecC
Q 001349 907 SNSILC-FIPQGAGIKVHLRNGKTKLLNSSKYPKCL---ALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHR-KLLG 979 (1094)
Q Consensus 907 ~~~~~~-fspdg~~l~~~~~~g~i~l~~~~~~v~~l---~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~-~~~~ 979 (1094)
..+.++ ...+++...+.+.+...+........... ...+ ..+...+.++.+.+.-.. +..+....... ....
T Consensus 136 ~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~-g~~i~~i~~~~~~~i~ 214 (410)
T PF04841_consen 136 YKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLAN-GETIYIIDENSFKQID 214 (410)
T ss_pred CCCCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEec-CCEEEEEEcccccccc
Confidence 111111 22222222222222111100000000000 0000 011222233333332222 22221111000 0011
Q ss_pred CCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecC--CCCEEEEEEeCC-EEEEEEcCCeEEEEECC
Q 001349 980 KANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT--LSEVRAMVVSSE-LVYLGCKGGTVEIWDQK 1051 (1094)
Q Consensus 980 h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~--~~~v~~l~~spd-~l~sgs~dg~I~vwd~~ 1051 (1094)
..+++..+++||++.++|....+| .+.+.+..-.+....+.. ......|.|+++ -++..- ...|.++...
T Consensus 215 ~~~~i~~iavSpng~~iAl~t~~g-~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~-~~~l~lvg~~ 287 (410)
T PF04841_consen 215 SDGPIIKIAVSPNGKFIALFTDSG-NLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW-EDELLLVGPD 287 (410)
T ss_pred CCCCeEEEEECCCCCEEEEEECCC-CEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe-CCEEEEECCC
Confidence 235899999999999999998886 788888765666666653 366778888886 333332 4456555543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.16 Score=57.93 Aligned_cols=130 Identities=14% Similarity=0.228 Sum_probs=87.9
Q ss_pred CeEEEEECCCC-----ceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCe-EEEE--ecCCCCE
Q 001349 955 GAIQEIDLATG-----TFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN-MVGS--LPTLSEV 1026 (1094)
Q Consensus 955 g~I~iwDl~~~-----~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~-~~~~--~~~~~~v 1026 (1094)
|.|.++++... +..... -....++|++++...+. ++++. |+.|.+|++...+ .... +.....+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~-----~~~~~g~V~ai~~~~~~-lv~~~---g~~l~v~~l~~~~~l~~~~~~~~~~~i 132 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIH-----STEVKGPVTAICSFNGR-LVVAV---GNKLYVYDLDNSKTLLKKAFYDSPFYI 132 (321)
T ss_dssp EEEEEEEECSS-----EEEEEE-----EEEESS-EEEEEEETTE-EEEEE---TTEEEEEEEETTSSEEEEEEE-BSSSE
T ss_pred cEEEEEEEEcccccceEEEEEE-----EEeecCcceEhhhhCCE-EEEee---cCEEEEEEccCcccchhhheecceEEE
Confidence 88999999884 222111 12235789999888544 55554 4699999998776 4332 2356689
Q ss_pred EEEEEeCCEEEEEEcCCeEEEEECCC-CcEEEEe-cccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1027 RAMVVSSELVYLGCKGGTVEIWDQKR-QIRIETL-QTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1027 ~~l~~spd~l~sgs~dg~I~vwd~~t-~~~~~~l-~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
.++....+++++|.....+.++.... +..+..+ .......++++.|-+|++.++.+..+|.|.++..
T Consensus 133 ~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~ 201 (321)
T PF03178_consen 133 TSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRY 201 (321)
T ss_dssp EEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE
T ss_pred EEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEE
Confidence 99999999999999888888774432 2223222 2233457899999877789999999999998864
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.00064 Score=75.30 Aligned_cols=48 Identities=15% Similarity=0.516 Sum_probs=40.4
Q ss_pred eeccCccccccCc--E-EcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCC
Q 001349 164 FVCPITTHIFDDP--V-TLETGQTYERRAIQEWIERGNSSCPITRQKLSST 211 (1094)
Q Consensus 164 ~~CpIc~~~~~dP--v-~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~ 211 (1094)
+.|-||+|-|++- + ++||+|.|=..||..|+.+....||+|++.....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCC
Confidence 5999999999853 3 5799999999999999998655699999865443
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=96.84 E-value=1.1 Score=54.77 Aligned_cols=59 Identities=17% Similarity=0.265 Sum_probs=44.5
Q ss_pred CEEEEEECCCCeEEEEecCCCC-E-EEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEeccc
Q 001349 1004 AAVKMWSTSNYNMVGSLPTLSE-V-RAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTG 1062 (1094)
Q Consensus 1004 ~~I~iwd~~~~~~~~~~~~~~~-v-~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~ 1062 (1094)
+.|.-||+.+++.......... . ..+....+.++.++.+|.++.+|..+|+.+..+..+
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 3688899999998887764322 1 123445567788888999999999999999988543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.47 Score=52.62 Aligned_cols=227 Identities=13% Similarity=0.114 Sum_probs=128.3
Q ss_pred cCcEEEEeeCCCCeEEEeCC-cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEE-----------
Q 001349 784 EMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQ----------- 849 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~-~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~----------- 849 (1094)
.+..++.|..+| +.+++.. ........+...|..+...++ .+++- .||.+.++++..-......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~ 83 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRSL 83 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEE-cCCccEEEEchhhccccccccccccccccc
Confidence 477899998888 8888883 222222234445999999985 43333 3599999998754211100
Q ss_pred -EecccCCCeEEEE--EecCCCEEEEEeCCCcEEEEECCCC--ce-EEEEecccCccceeeeecCceEEEeeCCCeEEEE
Q 001349 850 -QIREHTKAVTGLA--ILQSGEMLYSGSLDKTARVWSIGNE--EI-HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVH 923 (1094)
Q Consensus 850 -~l~~H~~~V~sv~--fspdg~~LaSgs~DgtI~vWdi~~~--~~-~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~ 923 (1094)
.-......+...+ -...+...+.....++|.+|.+... .. .........+.+..+.+.++.+++.....+..+.
T Consensus 84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~~id 163 (275)
T PF00780_consen 84 PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFYLID 163 (275)
T ss_pred cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceEEEe
Confidence 0112334455544 1123333344444558999888764 23 4555566778899999888888777666555555
Q ss_pred EeCCeEE-EEcCC-------------CCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEE
Q 001349 924 LRNGKTK-LLNSS-------------KYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQV 989 (1094)
Q Consensus 924 ~~~g~i~-l~~~~-------------~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~f 989 (1094)
..++... +.+.. ..+..+...++.++.+. |..-.+.|. .|.... ...-.+ .....++++
T Consensus 164 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~-~~~g~fv~~-~G~~~r--~~~i~W---~~~p~~~~~ 236 (275)
T PF00780_consen 164 LNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY-DNIGVFVNK-NGEPSR--KSTIQW---SSAPQSVAY 236 (275)
T ss_pred cCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe-cceEEEEcC-CCCcCc--ccEEEc---CCchhEEEE
Confidence 5444433 33221 12334444445544443 333334443 343321 111111 234556666
Q ss_pred eCCccEEEEEECCCCEEEEEECCCCeEEEEecCC
Q 001349 990 HNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTL 1023 (1094)
Q Consensus 990 s~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~ 1023 (1094)
.. .|++..+.+ .|.||++.+++.++++...
T Consensus 237 ~~--pyli~~~~~--~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 237 SS--PYLIAFSSN--SIEVRSLETGELVQTIPLP 266 (275)
T ss_pred EC--CEEEEECCC--EEEEEECcCCcEEEEEECC
Confidence 43 355555443 7999999999999888743
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.89 Score=49.36 Aligned_cols=208 Identities=11% Similarity=0.082 Sum_probs=104.7
Q ss_pred ecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEeccc-CCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 001349 808 VDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREH-TKAVTGLAILQSGEMLYSGSLDKTARVWS 883 (1094)
Q Consensus 808 ~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H-~~~V~sv~fspdg~~LaSgs~DgtI~vWd 883 (1094)
.+.+-...++.++|+|+ ++++....+.|...+.. | +.++.+.-. .+..-.|++..++.++++--.++.+.+.+
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G--~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-G--KVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-C--CEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 44555667999999985 77777788888888875 4 345544322 35678899988887777766789999998
Q ss_pred CCCCc--eEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC--CEEEEEEcCCeEEE
Q 001349 884 IGNEE--IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ--GKVYCGCQDGAIQE 959 (1094)
Q Consensus 884 i~~~~--~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~--~~l~sgs~Dg~I~i 959 (1094)
+.... ..... +..+... +.. ..+...-.++|++ +.++++-...-..+
T Consensus 93 ~~~~~~~~~~~~-------~~~~~l~-----~~~-----------------~~N~G~EGla~D~~~~~L~v~kE~~P~~l 143 (248)
T PF06977_consen 93 IDDDTTSLDRAD-------VQKISLG-----FPN-----------------KGNKGFEGLAYDPKTNRLFVAKERKPKRL 143 (248)
T ss_dssp E----TT--EEE-------EEEEE--------S--------------------SS--EEEEEETTTTEEEEEEESSSEEE
T ss_pred Eeccccccchhh-------ceEEecc-----ccc-----------------CCCcceEEEEEcCCCCEEEEEeCCCChhh
Confidence 85432 11110 0011000 000 0112233444432 34444444444444
Q ss_pred EECCC---CceeEEe--ccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCC----------C
Q 001349 960 IDLAT---GTFATIQ--TGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTL----------S 1024 (1094)
Q Consensus 960 wDl~~---~~~~~~~--~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~----------~ 1024 (1094)
|.+.. +...... ............+.++.++|....+..-|...+.|..+| .+|+.+..+.-. .
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~ 222 (248)
T PF06977_consen 144 YEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIP 222 (248)
T ss_dssp EEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---
T ss_pred EEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccC
Confidence 44332 1111110 000001123346789999987554445555667999999 677777666511 3
Q ss_pred CEEEEEEeCC-EEEEEEcCCeEEEE
Q 001349 1025 EVRAMVVSSE-LVYLGCKGGTVEIW 1048 (1094)
Q Consensus 1025 ~v~~l~~spd-~l~sgs~dg~I~vw 1048 (1094)
..-+|+|+++ .++..++-+..++|
T Consensus 223 QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 223 QPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred CccEEEECCCCCEEEEcCCceEEEe
Confidence 5788999998 68888888877765
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0038 Score=44.72 Aligned_cols=38 Identities=34% Similarity=0.576 Sum_probs=34.6
Q ss_pred eeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 001349 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWS 883 (1094)
Q Consensus 846 ~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWd 883 (1094)
.++..+..|...|+++.|++++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 46677788999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0016 Score=80.39 Aligned_cols=73 Identities=25% Similarity=0.479 Sum_probs=66.4
Q ss_pred CCCCCCceeccCccccccCcEEcC-CcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHhC
Q 001349 157 KHTPPKDFVCPITTHIFDDPVTLE-TGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQN 231 (1094)
Q Consensus 157 ~~~~~~~~~CpIc~~~~~dPv~~~-cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~~ 231 (1094)
-.++|++|.-||...+|.|||++| .|++-||.-|.+|+-. ..+-|.||.+|+.+.+. ||..|+.-|+.|....
T Consensus 864 l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~-pn~eLK~kI~~~~~ek 937 (943)
T KOG2042|consen 864 LGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVS-PNEELKAKIRCWIKEK 937 (943)
T ss_pred hccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcC-CCHHHHHHHHHHHHHh
Confidence 346899999999999999999997 9999999999999877 44689999999999997 9999999999998754
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0036 Score=74.45 Aligned_cols=106 Identities=12% Similarity=0.182 Sum_probs=84.1
Q ss_pred EEEEeCCccEEEEEEC---CCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEec
Q 001349 986 ALQVHNGLVYTASTSL---DGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQ 1060 (1094)
Q Consensus 986 sl~fs~~~~~las~s~---Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~ 1060 (1094)
-..|||...+++.++. .|+.|.||- .+|++.+...-+-.+++++|+|. .++.|-.-|.+.+|...+.+. ++..
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-htv~ 97 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-HTVV 97 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCcee-eeec
Confidence 3467888777766542 245888883 56777666666667788999999 688888999999999887654 4444
Q ss_pred ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1061 TGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1061 ~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
..|..+|..+.||++|..|+|+..-|.|.+|.+
T Consensus 98 ~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~ 130 (1416)
T KOG3617|consen 98 ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRY 130 (1416)
T ss_pred cCCCCCceeEEecCCCCeEEEcCCCceeEEEEe
Confidence 679999999999999999999999999999975
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.081 Score=62.20 Aligned_cols=183 Identities=14% Similarity=0.119 Sum_probs=101.1
Q ss_pred cCCCeEEEEEecCCCEEEEEe---CC-CcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeE
Q 001349 854 HTKAVTGLAILQSGEMLYSGS---LD-KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKT 929 (1094)
Q Consensus 854 H~~~V~sv~fspdg~~LaSgs---~D-gtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i 929 (1094)
-...+..-.|+|++..++-.+ .. ..+.++|++++....+.... ..- ....|+|||+.+
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~--g~~-------~~P~fspDG~~l--------- 252 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN--GNN-------GAPAFSPDGSKL--------- 252 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC--Ccc-------CCccCCCCCCEE---------
Confidence 345566778999888765442 22 45899999998643333321 111 122399999876
Q ss_pred EEEcCCCCceEEEEeCCEEEEEEcCCe--EEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCE--
Q 001349 930 KLLNSSKYPKCLALVQGKVYCGCQDGA--IQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAA-- 1005 (1094)
Q Consensus 930 ~l~~~~~~v~~l~~s~~~l~sgs~Dg~--I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~-- 1005 (1094)
+++...||. |.++|+.++.... +..-.+.-+.=.|+|+|.+++-.+..++.
T Consensus 253 ------------------~f~~~rdg~~~iy~~dl~~~~~~~-------Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~ 307 (425)
T COG0823 253 ------------------AFSSSRDGSPDIYLMDLDGKNLPR-------LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQ 307 (425)
T ss_pred ------------------EEEECCCCCccEEEEcCCCCccee-------cccCCccccCccCCCCCCEEEEEeCCCCCcc
Confidence 344455554 5566777666321 11111122245678999998888766554
Q ss_pred EEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEE-cCCe--EEEEECCCCcEEEEecccCCcceEEEEEcCCCCEE
Q 001349 1006 VKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGC-KGGT--VEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFL 1079 (1094)
Q Consensus 1006 I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs-~dg~--I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L 1079 (1094)
|.++|...+.. ..+. ....-..-.|+|| +++..+ .+|. |.+.|+.++.....+. +......-.|.++|+.+
T Consensus 308 I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt--~~~~~e~ps~~~ng~~i 384 (425)
T COG0823 308 IYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT--STYLNESPSWAPNGRMI 384 (425)
T ss_pred eEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc--ccccCCCCCcCCCCceE
Confidence 55555555444 3333 2222226678888 444433 3454 6777776665444442 22233444566666655
Q ss_pred EEE
Q 001349 1080 VIG 1082 (1094)
Q Consensus 1080 ~sg 1082 (1094)
...
T Consensus 385 ~~~ 387 (425)
T COG0823 385 MFS 387 (425)
T ss_pred EEe
Confidence 433
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.00083 Score=77.87 Aligned_cols=185 Identities=14% Similarity=0.202 Sum_probs=115.3
Q ss_pred EEEEeeCCCCeEEEeCC----cceeecccCCCcEEEEEEeC-C--EEEEEE----CCCeEEEEecCCC--cceeEEEecc
Q 001349 787 KVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFR-D--KIFSGH----SDGTIKVWTGRGS--ILHLIQQIRE 853 (1094)
Q Consensus 787 ~l~s~s~dg~I~vWd~~----~~~~~~~~h~~~V~~l~fsp-d--~LaSgs----~Dg~I~vWd~~t~--~~~~~~~l~~ 853 (1094)
.++.|..+|.|.+-... ....+..+|....++++|++ | .||.|- .|..+.|||+.++ ..+.-..+.+
T Consensus 72 IlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~ 151 (783)
T KOG1008|consen 72 ILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSS 151 (783)
T ss_pred hhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccccccc
Confidence 57778888999887765 22455667888999999998 3 787774 4678999999876 2122222222
Q ss_pred -cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEE
Q 001349 854 -HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLL 932 (1094)
Q Consensus 854 -H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~ 932 (1094)
-.....+++|-.+.+++.+|...+.+.++|++.....+. .+.
T Consensus 152 ~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~----------svn--------------------------- 194 (783)
T KOG1008|consen 152 STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS----------SVN--------------------------- 194 (783)
T ss_pred ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh----------hhh---------------------------
Confidence 344566888888889999999999999999985321111 110
Q ss_pred cCCCCceEEEEeC--CEEEEEEcCCeEEEEE-CCCCceeE-EeccceeecCCCCCeEEEEEeCCc-cEEEEEECCCCEEE
Q 001349 933 NSSKYPKCLALVQ--GKVYCGCQDGAIQEID-LATGTFAT-IQTGHRKLLGKANPVHALQVHNGL-VYTASTSLDGAAVK 1007 (1094)
Q Consensus 933 ~~~~~v~~l~~s~--~~l~sgs~Dg~I~iwD-l~~~~~~~-~~~~~~~~~~h~~~V~sl~fs~~~-~~las~s~Dg~~I~ 1007 (1094)
++.+..+.+.| ...++...||.|-+|| .++-+... ... +.-......+..++|.|.. -.+++...|..+|+
T Consensus 195 --Tk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~--~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIr 270 (783)
T KOG1008|consen 195 --TKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIIL--RNENKKPKQLFALAYCPTRTGLLAVLSRDSITIR 270 (783)
T ss_pred --hhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHh--hCCCCcccceeeEEeccCCcchhhhhccCcceEE
Confidence 01111222221 1244556699999999 33322211 000 0001112348899998643 34566677777999
Q ss_pred EEECC
Q 001349 1008 MWSTS 1012 (1094)
Q Consensus 1008 iwd~~ 1012 (1094)
++|+.
T Consensus 271 lydi~ 275 (783)
T KOG1008|consen 271 LYDIC 275 (783)
T ss_pred Eeccc
Confidence 99985
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.024 Score=62.90 Aligned_cols=171 Identities=20% Similarity=0.207 Sum_probs=123.0
Q ss_pred cchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHh-cCCchhHHHHHHHHHH
Q 001349 436 SIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMA-ASDGERFEIVCFLSEL 514 (1094)
Q Consensus 436 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~l~el 514 (1094)
.|+.-+++.||...|+..+++.+..-|+.||.+|.-|.|.+..+-..+-..+.++.|+..|.+ ....+|.+|+-+++.|
T Consensus 115 DnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissL 194 (342)
T KOG2160|consen 115 DNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSL 194 (342)
T ss_pred hhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHH
Confidence 578888999999999999999999999999999999999999999999999999999998776 4566678888888888
Q ss_pred HhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHH-HHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCC
Q 001349 515 VKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAG-LLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDY 593 (1094)
Q Consensus 515 ~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~-~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~~ 593 (1094)
++.+.-- ..+|++ -+++.. |.-.+|+-..+.+.-+-+ .|++.=+..++....+...+.....+..+.....
T Consensus 195 IRn~~~g-~~~fl~----~~G~~~---L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~ 266 (342)
T KOG2160|consen 195 IRNNKPG-QDEFLK----LNGYQV---LRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLD 266 (342)
T ss_pred HhcCcHH-HHHHHh----cCCHHH---HHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccc
Confidence 8775311 222222 223332 555566555555554433 3444444455566667777777777777776666
Q ss_pred hHHHHHHHHHHHhcccccccC
Q 001349 594 PAAQLAAAKTIVSLQGRFTTS 614 (1094)
Q Consensus 594 ~~~~~~~~~~~~~l~g~~s~~ 614 (1094)
...++.+-.+++.+--.++..
T Consensus 267 ~~~~e~~l~~~l~~l~~~~~~ 287 (342)
T KOG2160|consen 267 FEVNEAALTALLSLLSELSTR 287 (342)
T ss_pred hhhhHHHHHHHHHHHHHHhhc
Confidence 666777777777765555443
|
|
| >KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0004 Score=53.63 Aligned_cols=45 Identities=20% Similarity=0.193 Sum_probs=38.8
Q ss_pred eeccCccccccCcEEcCCcc-cccHHhHHHHHHhCCCCCCCCCcCC
Q 001349 164 FVCPITTHIFDDPVTLETGQ-TYERRAIQEWIERGNSSCPITRQKL 208 (1094)
Q Consensus 164 ~~CpIc~~~~~dPv~~~cGh-tfc~~ci~~~~~~~~~~CP~c~~~~ 208 (1094)
-.|.||.+--.|.|+-.||| ..|..|-.+.+...+..||.||.++
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 46999999888888889999 5699999987776677899999865
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.62 E-value=2.3 Score=50.25 Aligned_cols=221 Identities=13% Similarity=0.191 Sum_probs=113.0
Q ss_pred EEEEEEeCC--EE-EEEECCC----eEEEEecCCCcceeEEE-ecccCCCeEEEEEecCCCEEEEEeCCC----------
Q 001349 816 VLSIACFRD--KI-FSGHSDG----TIKVWTGRGSILHLIQQ-IREHTKAVTGLAILQSGEMLYSGSLDK---------- 877 (1094)
Q Consensus 816 V~~l~fspd--~L-aSgs~Dg----~I~vWd~~t~~~~~~~~-l~~H~~~V~sv~fspdg~~LaSgs~Dg---------- 877 (1094)
+....++|| ++ ++-+..| +|+++|+.++ +.+.. +... . -..+.|.+|++.|+-...|.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg--~~l~d~i~~~-~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG--KFLPDGIENP-K-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT--EEEEEEEEEE-E-SEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC--cCcCCccccc-c-cceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence 345778886 44 4445444 5999999999 44432 2221 1 22399999988776665433
Q ss_pred -cEEEEECCCCceE--EEEecccCcc-ceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEc
Q 001349 878 -TARVWSIGNEEIH--CVQVHDIKDQ-IQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQ 953 (1094)
Q Consensus 878 -tI~vWdi~~~~~~--~~~~~~~~~~-V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~ 953 (1094)
.|+.|++.++... .+........ ...+. .++|++++++....+. .
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~-------~s~d~~~l~i~~~~~~------------------------~ 250 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVS-------RSKDGRYLFISSSSGT------------------------S 250 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEE-------E-TTSSEEEEEEESSS------------------------S
T ss_pred cEEEEEECCCChHhCeeEEeecCCCcEEEEEE-------ecCcccEEEEEEEccc------------------------c
Confidence 3788888776532 2221111111 22333 6778877654433321 1
Q ss_pred CCeEEEEECCCC-----ceeEEeccceeecCCCCCe-EEEEEeCCccEEEEEECCC--CEEEEEECCCCeE---E-EEec
Q 001349 954 DGAIQEIDLATG-----TFATIQTGHRKLLGKANPV-HALQVHNGLVYTASTSLDG--AAVKMWSTSNYNM---V-GSLP 1021 (1094)
Q Consensus 954 Dg~I~iwDl~~~-----~~~~~~~~~~~~~~h~~~V-~sl~fs~~~~~las~s~Dg--~~I~iwd~~~~~~---~-~~~~ 1021 (1094)
...+.+.|...+ ... .+......+ ..+....+..++.+. .+. +.|.-.++.+... . -.+.
T Consensus 251 ~s~v~~~d~~~~~~~~~~~~-------~l~~~~~~~~~~v~~~~~~~yi~Tn-~~a~~~~l~~~~l~~~~~~~~~~~l~~ 322 (414)
T PF02897_consen 251 ESEVYLLDLDDGGSPDAKPK-------LLSPREDGVEYYVDHHGDRLYILTN-DDAPNGRLVAVDLADPSPAEWWTVLIP 322 (414)
T ss_dssp EEEEEEEECCCTTTSS-SEE-------EEEESSSS-EEEEEEETTEEEEEE--TT-TT-EEEEEETTSTSGGGEEEEEE-
T ss_pred CCeEEEEeccccCCCcCCcE-------EEeCCCCceEEEEEccCCEEEEeeC-CCCCCcEEEEecccccccccceeEEcC
Confidence 145777777764 222 222222233 334444444444443 221 2566667776542 2 2233
Q ss_pred CCC--CEEEEEEeCCEEEEE-EcCC--eEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEE
Q 001349 1022 TLS--EVRAMVVSSELVYLG-CKGG--TVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFL 1079 (1094)
Q Consensus 1022 ~~~--~v~~l~~spd~l~sg-s~dg--~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L 1079 (1094)
+.. .+..+....++++.. ..++ .|++|++..+.....+...-.+.|..+...++++.+
T Consensus 323 ~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~ 385 (414)
T PF02897_consen 323 EDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDEL 385 (414)
T ss_dssp -SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEE
T ss_pred CCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEE
Confidence 433 577888888855544 4443 688999994444444433344556776666666543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0013 Score=69.58 Aligned_cols=47 Identities=19% Similarity=0.509 Sum_probs=39.0
Q ss_pred eeccCcccccc--CcE-EcCCcccccHHhHHHHHHhCCCCCCCCCcCCCC
Q 001349 164 FVCPITTHIFD--DPV-TLETGQTYERRAIQEWIERGNSSCPITRQKLSS 210 (1094)
Q Consensus 164 ~~CpIc~~~~~--dPv-~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~ 210 (1094)
..|.||++-|. |-+ ++||.|.|=+.|+.+|+..-...||+||..+++
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 56999998875 344 579999999999999998545579999988764
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.028 Score=60.95 Aligned_cols=223 Identities=13% Similarity=0.148 Sum_probs=138.8
Q ss_pred chHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC------hHHHHH
Q 001349 302 ELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG------LLEAVV 375 (1094)
Q Consensus 302 ~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g------~~~Aa~ 375 (1094)
.+.+..+++-|.++. |+.+.+..|.+.+|-.|.|+.-... .++.++=..|++++|+.+|.+. .-.|..
T Consensus 150 TkvVvd~~AVPlfiq-----lL~s~~~~V~eQavWALGNiAGDS~-~~RD~vL~~galeplL~ll~ss~~~ismlRn~TW 223 (526)
T COG5064 150 TKVVVDAGAVPLFIQ-----LLSSTEDDVREQAVWALGNIAGDSE-GCRDYVLQCGALEPLLGLLLSSAIHISMLRNATW 223 (526)
T ss_pred eEEEEeCCchHHHHH-----HHcCchHHHHHHHHHHhccccCCch-hHHHHHHhcCchHHHHHHHHhccchHHHHHHhHH
Confidence 466666777777555 5667889999999999999954444 4555555678999999888665 457778
Q ss_pred HHHhcC---CChHHHHHhhhh-HHHHHHHHhcccc------------------cccc------------ccC-c----hh
Q 001349 376 LIDLLR---PSTRTLIEMDMM-ESLMTVIKKKEED------------------FLKM------------CLK-P----KS 416 (1094)
Q Consensus 376 ~l~~L~---~~~~~~~~~~~~-~~Ll~~l~~~~~~------------------~~~~------------~~~-~----~~ 416 (1094)
+|-+|. ..+.+-..|..+ |.|-.++-..+.+ ...+ +++ | +.
T Consensus 224 tLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqt 303 (526)
T COG5064 224 TLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQT 303 (526)
T ss_pred HHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccC
Confidence 888882 112222222222 4444444332110 0000 111 1 35
Q ss_pred hHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHH
Q 001349 417 VSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESF 496 (1094)
Q Consensus 417 aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~ 496 (1094)
.|+...+++++|.|.-+ ..++..|+++.+...|.+....-|..|-.-+.+.-+-+..--.++-+..=++||++||
T Consensus 304 PalR~vGNIVTG~D~QT-----qviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~ll 378 (526)
T COG5064 304 PALRSVGNIVTGSDDQT-----QVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLL 378 (526)
T ss_pred HHHHhhcCeeecCccce-----ehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHH
Confidence 56777788888877544 3577889999999988876666666665555555455556667888888899999999
Q ss_pred HhcCCch-hHHHHHHHHHHHhccccchhHHHHHHhhhcCcchh
Q 001349 497 MAASDGE-RFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSS 538 (1094)
Q Consensus 497 ~~~~~~~-~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~ 538 (1094)
.+..=+. |++|-+..-.-+...++. .+++-+-..|.+..
T Consensus 379 s~ae~k~kKEACWAisNatsgg~~~P---D~iryLv~qG~Ikp 418 (526)
T COG5064 379 SSAEYKIKKEACWAISNATSGGLNRP---DIIRYLVSQGFIKP 418 (526)
T ss_pred HHHHHHHHHHHHHHHHhhhccccCCc---hHHHHHHHccchhH
Confidence 8865444 445544444444444544 23444445555554
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.55 Score=52.73 Aligned_cols=223 Identities=10% Similarity=0.039 Sum_probs=118.1
Q ss_pred EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCce-EEEEecccCcccee
Q 001349 825 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEI-HCVQVHDIKDQIQN 903 (1094)
Q Consensus 825 ~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~-~~~~~~~~~~~V~~ 903 (1094)
++.+--..+.|.-||..++. ...+. +.+.+.++..-.++..|+++.. -+.+++.+++.. ..+.......+.
T Consensus 39 L~w~DI~~~~i~r~~~~~g~---~~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~-- 110 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGK---KRVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPL-- 110 (307)
T ss_pred EEEEeCCCCeEEEecCCcCc---eEEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCc--
Confidence 55666677888889988763 23332 3333444444444445554433 367788766643 222211111111
Q ss_pred eeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCC
Q 001349 904 LAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANP 983 (1094)
Q Consensus 904 v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~ 983 (1094)
..++...+.|+|...+..... ++ .. .-..-.-|.++.+|. .+.... .+..+-..
T Consensus 111 --~r~ND~~v~pdG~~wfgt~~~-----~~-------~~-----~~~~~~~G~lyr~~p-~g~~~~------l~~~~~~~ 164 (307)
T COG3386 111 --NRPNDGVVDPDGRIWFGDMGY-----FD-------LG-----KSEERPTGSLYRVDP-DGGVVR------LLDDDLTI 164 (307)
T ss_pred --CCCCceeEcCCCCEEEeCCCc-----cc-------cC-----ccccCCcceEEEEcC-CCCEEE------eecCcEEe
Confidence 123344467777654332221 00 00 000011234555554 344432 22233345
Q ss_pred eEEEEEeCCccEEEEEECCCCEEEEEECCC--CeE-----EEEec-CCCCEEEEEEeCC-EEE-EEEcCC-eEEEEECCC
Q 001349 984 VHALQVHNGLVYTASTSLDGAAVKMWSTSN--YNM-----VGSLP-TLSEVRAMVVSSE-LVY-LGCKGG-TVEIWDQKR 1052 (1094)
Q Consensus 984 V~sl~fs~~~~~las~s~Dg~~I~iwd~~~--~~~-----~~~~~-~~~~v~~l~~spd-~l~-sgs~dg-~I~vwd~~t 1052 (1094)
-+.++|+||+..+...-...+.|.-|++.. +.. ...+. ..+..-.+++..+ .++ ++..+| .|.+|+..
T Consensus 165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd- 243 (307)
T COG3386 165 PNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD- 243 (307)
T ss_pred cCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-
Confidence 678999999977766655545788887752 111 11111 2455666777776 455 444443 99999999
Q ss_pred CcEEEEecccCCcceEEEEEc-CCCCEEEEEe
Q 001349 1053 QIRIETLQTGTSGKVQCMALD-DNEEFLVIGT 1083 (1094)
Q Consensus 1053 ~~~~~~l~~~h~~~I~~l~~S-pdg~~L~sgs 1083 (1094)
|+++..+.. ....+++++|- |+.+.|+..+
T Consensus 244 G~l~~~i~l-P~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 244 GKLLGEIKL-PVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CcEEEEEEC-CCCCCccceEeCCCcCEEEEEe
Confidence 998888853 33678888884 4555555443
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.16 Score=59.80 Aligned_cols=179 Identities=12% Similarity=0.038 Sum_probs=100.4
Q ss_pred ccCCCcEEEEEEeCC---EEEEE--ECC-CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEE-eCCCc--EE
Q 001349 810 SSENGKVLSIACFRD---KIFSG--HSD-GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSG-SLDKT--AR 880 (1094)
Q Consensus 810 ~~h~~~V~~l~fspd---~LaSg--s~D-g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSg-s~Dgt--I~ 880 (1094)
......+..-.|+|+ ..+.. ... ..+.++|+.++....+..+.++.. .-.|+|||+.|+-. ..||. |.
T Consensus 189 ~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~---~P~fspDG~~l~f~~~rdg~~~iy 265 (425)
T COG0823 189 TDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG---APAFSPDGSKLAFSSSRDGSPDIY 265 (425)
T ss_pred cccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccC---CccCCCCCCEEEEEECCCCCccEE
Confidence 334455666778875 22222 222 459999999986666666666654 45899999877644 45665 55
Q ss_pred EEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCC--eEE
Q 001349 881 VWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDG--AIQ 958 (1094)
Q Consensus 881 vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg--~I~ 958 (1094)
+.|+.++.... ......+.. .-.|+|||+.++..+ +..| .|.
T Consensus 266 ~~dl~~~~~~~---Lt~~~gi~~------~Ps~spdG~~ivf~S---------------------------dr~G~p~I~ 309 (425)
T COG0823 266 LMDLDGKNLPR---LTNGFGINT------SPSWSPDGSKIVFTS---------------------------DRGGRPQIY 309 (425)
T ss_pred EEcCCCCccee---cccCCcccc------CccCCCCCCEEEEEe---------------------------CCCCCcceE
Confidence 55666654222 111111111 123999999865433 2333 355
Q ss_pred EEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCE--EEEEECCCCeEEEEecCCCCEEEEEEeCC
Q 001349 959 EIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAA--VKMWSTSNYNMVGSLPTLSEVRAMVVSSE 1034 (1094)
Q Consensus 959 iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~--I~iwd~~~~~~~~~~~~~~~v~~l~~spd 1034 (1094)
++|...+..... +..+ ..-..-.++|++.+++..+..++. |.+.|..++...+.+.+......-.+.++
T Consensus 310 ~~~~~g~~~~ri-----T~~~--~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~n 380 (425)
T COG0823 310 LYDLEGSQVTRL-----TFSG--GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPN 380 (425)
T ss_pred EECCCCCceeEe-----eccC--CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCC
Confidence 566665554221 1111 111156678999998888754333 66666666554555554444444555555
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.16 Score=62.39 Aligned_cols=226 Identities=16% Similarity=0.204 Sum_probs=120.5
Q ss_pred CcEEEEeeCCC------CeEEEeCCcceeec---ccCCCcEEEEEEeCC-EEEEEECC------CeEEEEecCCCcceeE
Q 001349 785 MVKVLSNGHDS------SADFWNHRELVHVD---SSENGKVLSIACFRD-KIFSGHSD------GTIKVWTGRGSILHLI 848 (1094)
Q Consensus 785 ~~~l~s~s~dg------~I~vWd~~~~~~~~---~~h~~~V~~l~fspd-~LaSgs~D------g~I~vWd~~t~~~~~~ 848 (1094)
+..++.||.++ .+..+|..+..... -.+...-.+++..++ ..++|+.| .++..||..++.|..+
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~ 364 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV 364 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence 45667777774 56667766321111 112333556667776 78888888 3577889888866555
Q ss_pred EEecccCCCeEEEEEecCCCEEEEEeCCCc-----EEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEE
Q 001349 849 QQIREHTKAVTGLAILQSGEMLYSGSLDKT-----ARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVH 923 (1094)
Q Consensus 849 ~~l~~H~~~V~sv~fspdg~~LaSgs~Dgt-----I~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~ 923 (1094)
..+...........+ +|.+.|+||.||. |-.||..+.++........ .....
T Consensus 365 a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~--~r~~~------------------- 421 (571)
T KOG4441|consen 365 APMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT--RRSGH------------------- 421 (571)
T ss_pred CCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCc--ceeee-------------------
Confidence 444333222222222 7888899999864 6667777654332221111 11110
Q ss_pred EeCCeEEEEcCCCCceEEEEeCCE-EEEEEcC------CeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEE
Q 001349 924 LRNGKTKLLNSSKYPKCLALVQGK-VYCGCQD------GAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYT 996 (1094)
Q Consensus 924 ~~~g~i~l~~~~~~v~~l~~s~~~-l~sgs~D------g~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~l 996 (1094)
+++..+++ .++|+.+ .++..||..++......+-.....+ ..++...+..|.
T Consensus 422 ----------------gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~-----~g~a~~~~~iYv 480 (571)
T KOG4441|consen 422 ----------------GVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSG-----FGVAVLNGKIYV 480 (571)
T ss_pred ----------------EEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccccc-----ceEEEECCEEEE
Confidence 11111222 2334333 4678999998887643222111112 235556666666
Q ss_pred EEEECC---CCEEEEEECCCCe--EEEEecCCCCEEEEEEeCC-EEEEEEcCC-----eEEEEECCCCc
Q 001349 997 ASTSLD---GAAVKMWSTSNYN--MVGSLPTLSEVRAMVVSSE-LVYLGCKGG-----TVEIWDQKRQI 1054 (1094)
Q Consensus 997 as~s~D---g~~I~iwd~~~~~--~~~~~~~~~~v~~l~~spd-~l~sgs~dg-----~I~vwd~~t~~ 1054 (1094)
+.|..+ ..+|..||..+.+ .+........-..++...+ ..++|+.|| +|..||..+.+
T Consensus 481 vGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 481 VGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred ECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence 555332 1357888887644 3333333333334444444 666777665 57777766543
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0062 Score=43.54 Aligned_cols=38 Identities=29% Similarity=0.623 Sum_probs=33.0
Q ss_pred cEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1054 IRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1054 ~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
++...+ ..|...|+++.|++++.++++++.||.+++|+
T Consensus 3 ~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTL-KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEE-EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 445566 47888999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.011 Score=56.02 Aligned_cols=116 Identities=12% Similarity=0.141 Sum_probs=92.9
Q ss_pred HHHhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHH
Q 001349 387 LIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAV 466 (1094)
Q Consensus 387 ~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 466 (1094)
+...+.++.|+..|..+.. ..+..++..|..+-.. +++....+++.|+++.|++.+..++.+-+..++
T Consensus 3 ~~~~~~i~~l~~~l~~~~~-------~~~~~a~~~l~~l~~~-----~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~ 70 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDE-------NVQREAAWALSNLSAG-----NNDNIQAVVEAGGLPALVQLLKSEDEEVVKAAL 70 (120)
T ss_pred HHHcCChHHHHHHHHcCCH-------HHHHHHHHHHHHHhcC-----CHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHH
Confidence 4556677889998887641 2256666667766322 267778888899999999999999999999999
Q ss_pred HHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHH
Q 001349 467 GILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSEL 514 (1094)
Q Consensus 467 ~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el 514 (1094)
.+|.+..+.....+..+.+.+.++.+++++...+.+.+..+..+|..|
T Consensus 71 ~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 71 WALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 999888887778888888899999999999988888888888888765
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.014 Score=55.30 Aligned_cols=100 Identities=11% Similarity=0.111 Sum_probs=79.3
Q ss_pred hhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhccc
Q 001349 440 TIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNR 519 (1094)
Q Consensus 440 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r 519 (1094)
.+++.|+++.|++.+..++.+.|..++.+|......+..++..+.+.+.++.++.++...+.+.+..++..|..+...+-
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 35678999999999999999999999998888777778899999999999999999998888888899999999976532
Q ss_pred cchhHHHHHHhhhcCcchhHHHHHHHHh
Q 001349 520 RTFNEQILHIIKDEGTYSSMHTLLVYLQ 547 (1094)
Q Consensus 520 ~~~~~~~l~~i~~~~~~~~~~~~~~~l~ 547 (1094)
.....+.+.|.++. ++.+++
T Consensus 82 -----~~~~~~~~~g~l~~---l~~~l~ 101 (120)
T cd00020 82 -----DNKLIVLEAGGVPK---LVNLLD 101 (120)
T ss_pred -----HHHHHHHHCCChHH---HHHHHh
Confidence 22333344554444 555553
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.013 Score=68.50 Aligned_cols=91 Identities=16% Similarity=0.111 Sum_probs=72.7
Q ss_pred CCcEEEEEEeC--CEEEEEECCCeEEEEecCCCcceeEEEecccCCCeE-EEEEecCCCEEEEEeCCCcEEEEECCCCce
Q 001349 813 NGKVLSIACFR--DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVT-GLAILQSGEMLYSGSLDKTARVWSIGNEEI 889 (1094)
Q Consensus 813 ~~~V~~l~fsp--d~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~-sv~fspdg~~LaSgs~DgtI~vWdi~~~~~ 889 (1094)
...|.-+.|+| |++|.+..+|.|-+..+.- +.++++.-|...++ +++|.|||+.|+.|-.||+|++.|+.++..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~---qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNW---QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEecc---ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 45678889999 4999999999999998873 67888887888887 999999999999999999999999999853
Q ss_pred EEEEecccCccceeeee
Q 001349 890 HCVQVHDIKDQIQNLAV 906 (1094)
Q Consensus 890 ~~~~~~~~~~~V~~v~~ 906 (1094)
..-.......+|.++.|
T Consensus 97 l~~~~~s~e~~is~~~w 113 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIW 113 (665)
T ss_pred eeccccccccchheeec
Confidence 32222334455555553
|
|
| >KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0028 Score=68.07 Aligned_cols=55 Identities=25% Similarity=0.477 Sum_probs=45.0
Q ss_pred CCCCCceeccCccccccCcEEc-CCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCC
Q 001349 158 HTPPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKL 213 (1094)
Q Consensus 158 ~~~~~~~~CpIc~~~~~dPv~~-~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~ 213 (1094)
...|+.-.||+|+.--.+|.++ -.|..||+.||-.+... ++.||+++.+....++
T Consensus 295 ~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~~v~~l 350 (357)
T KOG0826|consen 295 LLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPASVDHL 350 (357)
T ss_pred cCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcchHHHH
Confidence 3445678899999999999776 56999999999999985 7789999887654433
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.23 Score=60.20 Aligned_cols=230 Identities=12% Similarity=0.198 Sum_probs=149.3
Q ss_pred hHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCChHHHHHh---
Q 001349 318 FVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTLIEM--- 390 (1094)
Q Consensus 318 ~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~~~~~~~--- 390 (1094)
++...+.+.++.|++.+...|..+...+....+.+. ..+-++.++..|+.. ...|..+|..|...+.....+
T Consensus 81 ~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~-~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~ 159 (503)
T PF10508_consen 81 FLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLV-DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDS 159 (503)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhc-CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCc
Confidence 333344467899999999998888655554444333 445668888888776 456677888887776665544
Q ss_pred hhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHH
Q 001349 391 DMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILL 470 (1094)
Q Consensus 391 ~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~ 470 (1094)
+..+.|..++.+.++. .-+.+++-++.-+ ..+.+....+...|.++.+++.+++.+.=-|.++..+|.
T Consensus 160 ~~~~~L~~l~~~~~~~----------vR~Rv~el~v~i~--~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~ 227 (503)
T PF10508_consen 160 NLLSKLKSLMSQSSDI----------VRCRVYELLVEIA--SHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLS 227 (503)
T ss_pred chHHHHHHHHhccCHH----------HHHHHHHHHHHHH--hcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 2246666666553321 1122333232222 344567777888898999999999999999999999888
Q ss_pred HHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHH------HHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHH
Q 001349 471 RCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEI------VCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLV 544 (1094)
Q Consensus 471 ~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~ 544 (1094)
.... ...+..|+.+.+-++-++.++.......+..+ +.|+-.+... .-.+++... -..++.+..
T Consensus 228 ~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~----~~~~v~~~~-----p~~~~~l~~ 297 (503)
T PF10508_consen 228 ELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV----SPQEVLELY-----PAFLERLFS 297 (503)
T ss_pred HHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc----ChHHHHHHH-----HHHHHHHHH
Confidence 7766 88889999999999999998877544443333 3444444332 122232222 234556667
Q ss_pred HHhhcCCccchhHHHHHHhhhcccCC
Q 001349 545 YLQTANHDQCPVVAGLLLQLDLLAEP 570 (1094)
Q Consensus 545 ~l~~~~~~~~~~~a~~l~~l~~~~~~ 570 (1094)
.+++..+..++.|-.-|.++..-.+.
T Consensus 298 ~~~s~d~~~~~~A~dtlg~igst~~G 323 (503)
T PF10508_consen 298 MLESQDPTIREVAFDTLGQIGSTVEG 323 (503)
T ss_pred HhCCCChhHHHHHHHHHHHHhCCHHH
Confidence 77777777777777777777654433
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.064 Score=58.31 Aligned_cols=80 Identities=18% Similarity=0.207 Sum_probs=65.1
Q ss_pred hhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhH--HHHHHHHHHHh
Q 001349 439 NTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERF--EIVCFLSELVK 516 (1094)
Q Consensus 439 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~l~el~~ 516 (1094)
+-++..|++|.++.+|-+++.+.|++++.+|-+.--....||.++.++++++|++.||.+....-+. ++.=.|+.|-+
T Consensus 151 kvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcR 230 (526)
T COG5064 151 KVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCR 230 (526)
T ss_pred EEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhC
Confidence 3467889999999999999999999999999988888899999999999999999999865542222 34455666655
Q ss_pred cc
Q 001349 517 LN 518 (1094)
Q Consensus 517 ~~ 518 (1094)
.+
T Consensus 231 Gk 232 (526)
T COG5064 231 GK 232 (526)
T ss_pred CC
Confidence 44
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.36 E-value=1.4 Score=50.06 Aligned_cols=208 Identities=13% Similarity=0.129 Sum_probs=117.1
Q ss_pred CeEEEEecCCCcceeEEEecccCCCeEEEE---EecC----CCEEEEEeC----------CCcEEEEECCCC-----ceE
Q 001349 833 GTIKVWTGRGSILHLIQQIREHTKAVTGLA---ILQS----GEMLYSGSL----------DKTARVWSIGNE-----EIH 890 (1094)
Q Consensus 833 g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~---fspd----g~~LaSgs~----------DgtI~vWdi~~~-----~~~ 890 (1094)
+.|++.|..+........+.. ...++++. |..+ ..+|+.|+. .|.|.++++... +++
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~-~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEP-NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEET-TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred cEEEEEeCCCCeEEEEEECCC-CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 357777877763222222332 22344433 3322 457777654 288999999984 566
Q ss_pred EEEecccCccceeeeecCceEEEeeCCCeEEEEEeC-Ce-E---EEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCC-
Q 001349 891 CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRN-GK-T---KLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT- 964 (1094)
Q Consensus 891 ~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~-g~-i---~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~- 964 (1094)
.+.....+++|.++......+...-+ ..+.+...+ .. + ..++....+.++...++.+++|.....+.++....
T Consensus 81 ~i~~~~~~g~V~ai~~~~~~lv~~~g-~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~ 159 (321)
T PF03178_consen 81 LIHSTEVKGPVTAICSFNGRLVVAVG-NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEE 159 (321)
T ss_dssp EEEEEEESS-EEEEEEETTEEEEEET-TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETT
T ss_pred EEEEEeecCcceEhhhhCCEEEEeec-CEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEcc
Confidence 66667778999998855444333332 222222222 22 1 12334457788888889999999999998875443
Q ss_pred -CceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCC-------Ce----EEEEecCCCCEEEE---
Q 001349 965 -GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN-------YN----MVGSLPTLSEVRAM--- 1029 (1094)
Q Consensus 965 -~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~-------~~----~~~~~~~~~~v~~l--- 1029 (1094)
.+...... ......++++.|-.++..++.+..+| .+.++.... +. ....+..+..|+++
T Consensus 160 ~~~l~~va~-----d~~~~~v~~~~~l~d~~~~i~~D~~g-nl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~ 233 (321)
T PF03178_consen 160 NNKLILVAR-----DYQPRWVTAAEFLVDEDTIIVGDKDG-NLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRG 233 (321)
T ss_dssp TE-EEEEEE-----ESS-BEEEEEEEE-SSSEEEEEETTS-EEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE-
T ss_pred CCEEEEEEe-----cCCCccEEEEEEecCCcEEEEEcCCC-eEEEEEECCCCcccccccccceeEEEEECCCccceEEEE
Confidence 22222111 11234688888874445777777776 888887752 22 33445567778887
Q ss_pred EEeC-----C-----EEEEEEcCCeEEEE
Q 001349 1030 VVSS-----E-----LVYLGCKGGTVEIW 1048 (1094)
Q Consensus 1030 ~~sp-----d-----~l~sgs~dg~I~vw 1048 (1094)
.+.| + .++.++.+|.|.+.
T Consensus 234 ~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 234 SLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp -SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EeeecCCCCcccccceEEEEecCCEEEEE
Confidence 4333 1 37888888888744
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.26 Score=54.77 Aligned_cols=223 Identities=13% Similarity=0.067 Sum_probs=128.4
Q ss_pred HhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCChHHHHHh
Q 001349 315 INGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTLIEM 390 (1094)
Q Consensus 315 ~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~~~~~~~ 390 (1094)
++.+.+.| .+.+..|...++..|.++.. .-.++.+..+++.. +..|+..|..|...+.. ..
T Consensus 25 ~~~L~~~L-~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--~~ 89 (280)
T PRK09687 25 DDELFRLL-DDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC--QD 89 (280)
T ss_pred HHHHHHHH-hCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc--hH
Confidence 34444444 55677788888888877721 11335666666665 56677778877653321 11
Q ss_pred hhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHH
Q 001349 391 DMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILL 470 (1094)
Q Consensus 391 ~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~ 470 (1094)
+.++.|..++.+..+. .-+.+|+..|+.+= ..........+..|...+...+.+.|..|+..|.
T Consensus 90 ~a~~~L~~l~~~D~d~------~VR~~A~~aLG~~~----------~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg 153 (280)
T PRK09687 90 NVFNILNNLALEDKSA------CVRASAINATGHRC----------KKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALS 153 (280)
T ss_pred HHHHHHHHHHhcCCCH------HHHHHHHHHHhccc----------ccccccchHHHHHHHHHhhCCCHHHHHHHHHHHh
Confidence 2336666554433211 11455555565440 0011112334566767777778888888877764
Q ss_pred HHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcC
Q 001349 471 RCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTAN 550 (1094)
Q Consensus 471 ~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~ 550 (1094)
++ .+...+++|+.+|...+...|..|+..|-.+ .. +.-.+...|...|+...
T Consensus 154 ~~-----------~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~-~~----------------~~~~~~~~L~~~L~D~~ 205 (280)
T PRK09687 154 VI-----------NDEAAIPLLINLLKDPNGDVRNWAAFALNSN-KY----------------DNPDIREAFVAMLQDKN 205 (280)
T ss_pred cc-----------CCHHHHHHHHHHhcCCCHHHHHHHHHHHhcC-CC----------------CCHHHHHHHHHHhcCCC
Confidence 22 2234667788887776666676666666554 10 11122233444444444
Q ss_pred CccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcccc
Q 001349 551 HDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQGR 610 (1094)
Q Consensus 551 ~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~g~ 610 (1094)
++=+--++..|.++.- +++++.|+..|..++ +...++.||+.+|+.
T Consensus 206 ~~VR~~A~~aLg~~~~-----------~~av~~Li~~L~~~~---~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 206 EEIRIEAIIGLALRKD-----------KRVLSVLIKELKKGT---VGDLIIEAAGELGDK 251 (280)
T ss_pred hHHHHHHHHHHHccCC-----------hhHHHHHHHHHcCCc---hHHHHHHHHHhcCCH
Confidence 4445556666655432 579999999998866 466888999988753
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.26 E-value=3.4 Score=48.25 Aligned_cols=234 Identities=17% Similarity=0.164 Sum_probs=137.0
Q ss_pred cEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEE-EEEeCCCcEEEEECCCCceE
Q 001349 815 KVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEML-YSGSLDKTARVWSIGNEEIH 890 (1094)
Q Consensus 815 ~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~L-aSgs~DgtI~vWdi~~~~~~ 890 (1094)
....+.+.++ ..++-.....+.+-+.... ........-...-..+++++++..+ ++...++.|.+.|..+..
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n--~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~-- 107 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSN--TVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNT-- 107 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccc--eeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccc--
Confidence 4445566553 3333333335655555532 1111111111334577888888744 444556899999976653
Q ss_pred EEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEE
Q 001349 891 CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATI 970 (1094)
Q Consensus 891 ~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~ 970 (1094)
......... .+..+.++++++.+.+.... ..++++.+.|..+++....
T Consensus 108 ~~~~~~vG~-------~P~~~~~~~~~~~vYV~n~~-------------------------~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 108 VLGSIPVGL-------GPVGLAVDPDGKYVYVANAG-------------------------NGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred eeeEeeecc-------CCceEEECCCCCEEEEEecc-------------------------cCCceEEEEeCCCCeEEEE
Confidence 222211111 23344477777653222110 0368888888888877643
Q ss_pred eccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEE-E----ecCCCCEEEEEEeCC--EEEEEEc--
Q 001349 971 QTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVG-S----LPTLSEVRAMVVSSE--LVYLGCK-- 1041 (1094)
Q Consensus 971 ~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~-~----~~~~~~v~~l~~spd--~l~sgs~-- 1041 (1094)
.. .+. .+ ..++++|++..+.....+++.|.+.|.......+ + ..-......+.++++ ++++...
T Consensus 156 ~~-----vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 156 IP-----VGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred Ee-----cCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccC
Confidence 11 111 23 7899999998666666555699999987665553 1 223445567888887 4444433
Q ss_pred -CCeEEEEECCCCcEEEE-ecccCCcceEEEEEcCCCCEEEEEeCC-CcEEEEe
Q 001349 1042 -GGTVEIWDQKRQIRIET-LQTGTSGKVQCMALDDNEEFLVIGTSD-GRIQAWG 1092 (1094)
Q Consensus 1042 -dg~I~vwd~~t~~~~~~-l~~~h~~~I~~l~~Spdg~~L~sgs~D-G~I~iWd 1092 (1094)
++.+.+.|..++..... ...+.. ....+.++|+|+.+.+.... +.+.+-|
T Consensus 229 ~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid 281 (381)
T COG3391 229 GSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVID 281 (381)
T ss_pred CCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEe
Confidence 36999999999887766 322222 46678899999998887544 6666654
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.044 Score=62.93 Aligned_cols=132 Identities=9% Similarity=0.181 Sum_probs=89.8
Q ss_pred EEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCcc--------EEEEEECCCCEEEEEECCCCeE--E
Q 001349 948 VYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLV--------YTASTSLDGAAVKMWSTSNYNM--V 1017 (1094)
Q Consensus 948 l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~--------~las~s~Dg~~I~iwd~~~~~~--~ 1017 (1094)
+..+..-..++-.|+..|+.+... .-|.. |+-+.+.|+.. .++..+ ++.|.-||.+-... +
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEW------k~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs--~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEW------KFEDD-INMVDITPDFKFAQLTSEQTLVGLS--DNSVFRIDPRVQGKNKL 419 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEe------eccCC-cceeeccCCcchhcccccccEEeec--CCceEEecccccCccee
Confidence 455666677888899999988443 22332 56666655432 233332 34788999873211 1
Q ss_pred -----EEecCCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEE
Q 001349 1018 -----GSLPTLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQA 1090 (1094)
Q Consensus 1018 -----~~~~~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~i 1090 (1094)
+.+.......|++...+ ++++||.+|.|++||. .+....+...+-..+|..|..+.||++|+..+.. .+.+
T Consensus 420 ~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t-yLlL 496 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKT-YLLL 496 (644)
T ss_pred eeeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEeccc-EEEE
Confidence 12234567788888777 9999999999999998 6655555556788899999999999998866543 4443
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=96.22 E-value=3.5 Score=50.33 Aligned_cols=100 Identities=9% Similarity=0.077 Sum_probs=57.3
Q ss_pred CcEEEEeeCCCCeEEEeCCcceeecc--c-CCCcE----------EEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEe
Q 001349 785 MVKVLSNGHDSSADFWNHRELVHVDS--S-ENGKV----------LSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQI 851 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~~~~~~~~--~-h~~~V----------~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l 851 (1094)
+..++.++.++.|.-.|..+...... . -...+ ..+++..+.++.++.||.+.-.|..+| +.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TG--k~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTG--KVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCC--CEEeec
Confidence 44566666677776666653221111 0 00011 124556678888999999999999999 566554
Q ss_pred cc--cCCCeEEEEEec---CCCEEEEEeC------CCcEEEEECCCCc
Q 001349 852 RE--HTKAVTGLAILQ---SGEMLYSGSL------DKTARVWSIGNEE 888 (1094)
Q Consensus 852 ~~--H~~~V~sv~fsp---dg~~LaSgs~------DgtI~vWdi~~~~ 888 (1094)
.. +... ..+.-+| ++ .++.++. +|.|.-+|..+|+
T Consensus 147 ~~~~~~~~-~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~ 192 (527)
T TIGR03075 147 KNGDYKAG-YTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGK 192 (527)
T ss_pred cccccccc-ccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCc
Confidence 32 2110 1111122 44 4555432 6899999999996
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.22 Score=61.25 Aligned_cols=216 Identities=9% Similarity=0.119 Sum_probs=101.5
Q ss_pred EEEeCC-EEEEEECC------CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCC-----cEEEEECCC
Q 001349 819 IACFRD-KIFSGHSD------GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDK-----TARVWSIGN 886 (1094)
Q Consensus 819 l~fspd-~LaSgs~D------g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~Dg-----tI~vWdi~~ 886 (1094)
++...+ .++.|+.+ .++..||..++.+..+..+....... +++ .-+|+..+.||.++ ++..||..+
T Consensus 299 ~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 299 SAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA-VIDDTIYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred EEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE-EECCEEEEECCcCCCCCCceEEEEECCC
Confidence 344444 66667653 34778898887554443332211112 222 23677778888764 477888887
Q ss_pred CceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCc
Q 001349 887 EEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGT 966 (1094)
Q Consensus 887 ~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~ 966 (1094)
+++....... .+..... +..-+|+..++++.++... +........+...++ ...-..+..||+.+++
T Consensus 377 ~~W~~~~~mp--~~r~~~~------~~~~~g~IYviGG~~~~~~-~~~~~~~~~~~~~~~----~~~~~~ve~YDP~td~ 443 (557)
T PHA02713 377 DKWKMLPDMP--IALSSYG------MCVLDQYIYIIGGRTEHID-YTSVHHMNSIDMEED----THSSNKVIRYDTVNNI 443 (557)
T ss_pred CeEEECCCCC--ccccccc------EEEECCEEEEEeCCCcccc-ccccccccccccccc----ccccceEEEECCCCCe
Confidence 6543322211 1111110 0122344333333221100 000000000000000 0012458889998877
Q ss_pred eeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC----CEEEEEECCC---CeEEEEecCCCCEEEEEEeCC-EEEE
Q 001349 967 FATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG----AAVKMWSTSN---YNMVGSLPTLSEVRAMVVSSE-LVYL 1038 (1094)
Q Consensus 967 ~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg----~~I~iwd~~~---~~~~~~~~~~~~v~~l~~spd-~l~s 1038 (1094)
......-. +...-.+++...+..|+++|..+. ..+..||..+ +..+..++......+++...+ ..++
T Consensus 444 W~~v~~m~-----~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~ 518 (557)
T PHA02713 444 WETLPNFW-----TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMML 518 (557)
T ss_pred EeecCCCC-----cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEECCEEEEE
Confidence 64321110 111112345556666666543211 2467899876 344444443333334444444 6777
Q ss_pred EEcCC--eEEEEECCCCc
Q 001349 1039 GCKGG--TVEIWDQKRQI 1054 (1094)
Q Consensus 1039 gs~dg--~I~vwd~~t~~ 1054 (1094)
|+.+| ++..||+.+.+
T Consensus 519 Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 519 HCYESYMLQDTFNVYTYE 536 (557)
T ss_pred eeecceeehhhcCccccc
Confidence 88887 78888887765
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.37 Score=44.78 Aligned_cols=100 Identities=22% Similarity=0.328 Sum_probs=70.9
Q ss_pred eEEEEEe---C-CccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEE
Q 001349 984 VHALQVH---N-GLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIET 1058 (1094)
Q Consensus 984 V~sl~fs---~-~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~ 1058 (1094)
|+++++. . +...++.++.| ..|++|+- ...+..+.-...|+++.-... .++.|..+|+|-+|+. ...+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D-~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDD-FEIRVFKG--DEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCC-cEEEEEeC--CcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC--cceeee
Confidence 5566654 2 33567777777 49999974 467888887888888877665 8999999999999986 344555
Q ss_pred ecccCCcceEEEEEcC-C--C-CEEEEEeCCCcEEE
Q 001349 1059 LQTGTSGKVQCMALDD-N--E-EFLVIGTSDGRIQA 1090 (1094)
Q Consensus 1059 l~~~h~~~I~~l~~Sp-d--g-~~L~sgs~DG~I~i 1090 (1094)
++..| .++++++.. + | +-|++|-++|.|-+
T Consensus 77 iKSK~--~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 77 IKSKN--QVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eccCC--CeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 55334 466666543 2 2 36889999998753
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.61 Score=53.90 Aligned_cols=241 Identities=10% Similarity=0.090 Sum_probs=128.0
Q ss_pred CCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccc-eeee-----
Q 001349 832 DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQI-QNLA----- 905 (1094)
Q Consensus 832 Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V-~~v~----- 905 (1094)
.+.+.|||+.++. +..+......+....|||+|+.++-.. ++.|.+++..++....+.... ...+ ..+.
T Consensus 22 ~~~y~i~d~~~~~---~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg-~~~i~nG~~dwvye 96 (353)
T PF00930_consen 22 KGDYYIYDIETGE---ITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDG-EPGIYNGVPDWVYE 96 (353)
T ss_dssp EEEEEEEETTTTE---EEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES---TTTEEESB--HHHH
T ss_pred ceeEEEEecCCCc---eEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEecccc-ceeEEcCccceecc
Confidence 3678999999983 333333367788999999999998876 468999998887533333322 1111 1111
Q ss_pred ----ecCceEEEeeCCCeEEEEEeC-CeEE---EEc--CCC----CceEEEEeCCEEEEEEcCC--eEEEEECCCCceeE
Q 001349 906 ----VSNSILCFIPQGAGIKVHLRN-GKTK---LLN--SSK----YPKCLALVQGKVYCGCQDG--AIQEIDLATGTFAT 969 (1094)
Q Consensus 906 ----~~~~~~~fspdg~~l~~~~~~-g~i~---l~~--~~~----~v~~l~~s~~~l~sgs~Dg--~I~iwDl~~~~~~~ 969 (1094)
-....+.|+|||+.++....| ..+. +.+ ... .+..+.+. ..|..+. .+.++|+.+++...
T Consensus 97 EEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YP----k~G~~np~v~l~v~~~~~~~~~~ 172 (353)
T PF00930_consen 97 EEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYP----KAGDPNPRVSLFVVDLASGKTTE 172 (353)
T ss_dssp HHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE------BTTS---EEEEEEEESSSTCCCE
T ss_pred ccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccC----CCCCcCCceEEEEEECCCCcEEE
Confidence 113456699999999887766 2222 221 111 12222221 0112222 46678998887642
Q ss_pred EeccceeecCCCCCeEEEEEeCCcc-E-EEEEECCCC--EEEEEECCCCeEEEEec--CCCCE---EEEEEe-CC---EE
Q 001349 970 IQTGHRKLLGKANPVHALQVHNGLV-Y-TASTSLDGA--AVKMWSTSNYNMVGSLP--TLSEV---RAMVVS-SE---LV 1036 (1094)
Q Consensus 970 ~~~~~~~~~~h~~~V~sl~fs~~~~-~-las~s~Dg~--~I~iwd~~~~~~~~~~~--~~~~v---~~l~~s-pd---~l 1036 (1094)
.... ........-+..+.|.+++. + +...+.+.+ .+.++|..++....... ....| ....+. ++ ++
T Consensus 173 ~~~~-~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l 251 (353)
T PF00930_consen 173 LDPP-NSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFL 251 (353)
T ss_dssp E----HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEE
T ss_pred eeec-cccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEE
Confidence 2111 11123345688999988776 3 333344433 56667777665433332 33322 234443 44 56
Q ss_pred EEEEcCCe--EEEEECCCCcEEEEecccCCcceEE-EEEcCCCCEEE-EEeC
Q 001349 1037 YLGCKGGT--VEIWDQKRQIRIETLQTGTSGKVQC-MALDDNEEFLV-IGTS 1084 (1094)
Q Consensus 1037 ~sgs~dg~--I~vwd~~t~~~~~~l~~~h~~~I~~-l~~Spdg~~L~-sgs~ 1084 (1094)
.....+|. |++++...+. ...+. ...-.|.. +.|+++++.|+ ++..
T Consensus 252 ~~s~~~G~~hly~~~~~~~~-~~~lT-~G~~~V~~i~~~d~~~~~iyf~a~~ 301 (353)
T PF00930_consen 252 WISERDGYRHLYLYDLDGGK-PRQLT-SGDWEVTSILGWDEDNNRIYFTANG 301 (353)
T ss_dssp EEEETTSSEEEEEEETTSSE-EEESS--SSS-EEEEEEEECTSSEEEEEESS
T ss_pred EEEEcCCCcEEEEEcccccc-eeccc-cCceeecccceEcCCCCEEEEEecC
Confidence 66667775 4555666555 34553 23335644 67888877654 5544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.0032 Score=70.39 Aligned_cols=44 Identities=23% Similarity=0.524 Sum_probs=37.7
Q ss_pred ceeccCccccccCcE----EcCCcccccHHhHHHHHHhCCCCCCCCCcCCC
Q 001349 163 DFVCPITTHIFDDPV----TLETGQTYERRAIQEWIERGNSSCPITRQKLS 209 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv----~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~ 209 (1094)
--+||+|++-|.+-+ ++.|-|+|=..|+..|+.. +||+||....
T Consensus 175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~---scpvcR~~q~ 222 (493)
T KOG0804|consen 175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS---SCPVCRYCQS 222 (493)
T ss_pred CCCcchhHhhcCccccceeeeecccccchHHHhhcccC---cChhhhhhcC
Confidence 347999999999876 4689999999999999854 7999997665
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.95 Score=48.66 Aligned_cols=240 Identities=14% Similarity=0.141 Sum_probs=125.7
Q ss_pred EEEEeCC---EEEEEECCCe-EEEEecCCCcceeEEE--------ecccCCCeEEEEEecCCCEEEEEeCC-----CcEE
Q 001349 818 SIACFRD---KIFSGHSDGT-IKVWTGRGSILHLIQQ--------IREHTKAVTGLAILQSGEMLYSGSLD-----KTAR 880 (1094)
Q Consensus 818 ~l~fspd---~LaSgs~Dg~-I~vWd~~t~~~~~~~~--------l~~H~~~V~sv~fspdg~~LaSgs~D-----gtI~ 880 (1094)
.|+|+|. -++.+-.-|+ ..++|..+.. ...+ |.+|. .|||||.+|+..-.| |.|-
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~--~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViG 143 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQ--EPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIG 143 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCc--CcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEE
Confidence 3555553 3444444444 4567877763 3322 33443 599999999987554 7899
Q ss_pred EEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEE
Q 001349 881 VWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEI 960 (1094)
Q Consensus 881 vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iw 960 (1094)
|||.+.+-.+.-....+. ..+..+.+.+||+.+++.+. .|.... .|..-.+=.-+..-++.+.
T Consensus 144 vYd~r~~fqrvgE~~t~G-------iGpHev~lm~DGrtlvvanG--GIethp--------dfgR~~lNldsMePSlvll 206 (366)
T COG3490 144 VYDAREGFQRVGEFSTHG-------IGPHEVTLMADGRTLVVANG--GIETHP--------DFGRTELNLDSMEPSLVLL 206 (366)
T ss_pred EEecccccceecccccCC-------cCcceeEEecCCcEEEEeCC--ceeccc--------ccCccccchhhcCccEEEE
Confidence 999986432222222222 23334458999998877543 222110 0000112223344556666
Q ss_pred ECCCCceeEEeccceeec--CCCCCeEEEEEeCCccEEEEEECCCC----EEEEEECCCCeEEEEecC--------CCCE
Q 001349 961 DLATGTFATIQTGHRKLL--GKANPVHALQVHNGLVYTASTSLDGA----AVKMWSTSNYNMVGSLPT--------LSEV 1026 (1094)
Q Consensus 961 Dl~~~~~~~~~~~~~~~~--~h~~~V~sl~fs~~~~~las~s~Dg~----~I~iwd~~~~~~~~~~~~--------~~~v 1026 (1094)
|..+|..+.. .++. -+.-.|.-++..+|+...+.+-..|- ---+=-...++.+.-+.- ...|
T Consensus 207 d~atG~liek----h~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYi 282 (366)
T COG3490 207 DAATGNLIEK----HTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYI 282 (366)
T ss_pred eccccchhhh----ccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhh
Confidence 7677766532 1121 23456778888888877766644330 000111122333333321 2446
Q ss_pred EEEEEeCC--EEEEE-EcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001349 1027 RAMVVSSE--LVYLG-CKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1027 ~~l~~spd--~l~sg-s~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iW 1091 (1094)
-+++.+.+ +++.. -..+...+||..+|..+..-.- .....++- .+.-++..+.+|.|.++
T Consensus 283 gsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l---~daaGva~--~~~gf~vssg~G~~~~~ 345 (366)
T COG3490 283 GSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL---PDAAGVAA--AKGGFAVSSGQGRIIFY 345 (366)
T ss_pred hheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc---ccccccee--ccCceEEecCCceEEec
Confidence 67777754 44443 4567788999999987765421 12233333 23335555667776643
|
|
| >KOG3039 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.005 Score=63.24 Aligned_cols=52 Identities=17% Similarity=0.484 Sum_probs=45.2
Q ss_pred CceeccCccccccCcE----EcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCC
Q 001349 162 KDFVCPITTHIFDDPV----TLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLP 214 (1094)
Q Consensus 162 ~~~~CpIc~~~~~dPv----~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~ 214 (1094)
..+.||+|.+.+.+.+ +-+|||.||..|.++.+.. ...||+|..++...+++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdrdiI 275 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDRDII 275 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCcccceE
Confidence 4799999999999854 3499999999999998876 55799999999998886
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.81 E-value=2.3 Score=49.71 Aligned_cols=216 Identities=14% Similarity=0.185 Sum_probs=130.8
Q ss_pred cccccCc-EEEEeeCCCCeEEEeCCc--cee-ecccCCCcEEEEEEeCC--EEEEEEC---CCeEEEEecCCCcceeEEE
Q 001349 780 PLAFEMV-KVLSNGHDSSADFWNHRE--LVH-VDSSENGKVLSIACFRD--KIFSGHS---DGTIKVWTGRGSILHLIQQ 850 (1094)
Q Consensus 780 ~~~~d~~-~l~s~s~dg~I~vWd~~~--~~~-~~~~h~~~V~~l~fspd--~LaSgs~---Dg~I~vWd~~t~~~~~~~~ 850 (1094)
.+.+.+. ..++...++.|.+.|... ... ...+. ....++++++ .++.+.. ++++.+.|..++ ..+.+
T Consensus 80 ~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~--~~~~~ 155 (381)
T COG3391 80 AVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN--KVTAT 155 (381)
T ss_pred eeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCC--eEEEE
Confidence 4455566 445555568899998552 111 12222 5567888875 4444433 788999998888 55555
Q ss_pred ecccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeE
Q 001349 851 IREHTKAVTGLAILQSGEMLYSGS-LDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKT 929 (1094)
Q Consensus 851 l~~H~~~V~sv~fspdg~~LaSgs-~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i 929 (1094)
...-..+ ..++++|+|+.++.+. .+++|.+.|..+..... ........+.-.+..+.+.|+|..+.+....
T Consensus 156 ~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~----~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~--- 227 (381)
T COG3391 156 IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR----GSVGSLVGVGTGPAGIAVDPDGNRVYVANDG--- 227 (381)
T ss_pred EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec----cccccccccCCCCceEEECCCCCEEEEEecc---
Confidence 4433334 8899999999666665 78999999977653221 1111112222233445578888754332211
Q ss_pred EEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEE
Q 001349 930 KLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMW 1009 (1094)
Q Consensus 930 ~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iw 1009 (1094)
+.++.+...|..++....... ..+.. ....+.++|++.++......++.+.+-
T Consensus 228 ----------------------~~~~~v~~id~~~~~v~~~~~----~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vi 280 (381)
T COG3391 228 ----------------------SGSNNVLKIDTATGNVTATDL----PVGSG-APRGVAVDPAGKAAYVANSQGGTVSVI 280 (381)
T ss_pred ----------------------CCCceEEEEeCCCceEEEecc----ccccC-CCCceeECCCCCEEEEEecCCCeEEEE
Confidence 114688888888877653200 11111 345678889988887775555699999
Q ss_pred ECCCCeEEEEecCCC----CEEEEEEeCC
Q 001349 1010 STSNYNMVGSLPTLS----EVRAMVVSSE 1034 (1094)
Q Consensus 1010 d~~~~~~~~~~~~~~----~v~~l~~spd 1034 (1094)
|..+......+.... .+..+++.+.
T Consensus 281 d~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 281 DGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred eCCCCceeeeecccccccccceeccceee
Confidence 999888877766332 3555555544
|
|
| >PF04641 Rtf2: Rtf2 RING-finger | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.007 Score=66.38 Aligned_cols=64 Identities=20% Similarity=0.456 Sum_probs=46.5
Q ss_pred CceeccCccccccC--cEE--cCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChh---HHHHHHHHHH
Q 001349 162 KDFVCPITTHIFDD--PVT--LETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTN---YVLKRLIASW 227 (1094)
Q Consensus 162 ~~~~CpIc~~~~~d--Pv~--~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN---~~l~~~i~~~ 227 (1094)
..|.|||++..|.. +++ .+|||.|+..||.+.- ....||.|.+++...+++.-| ..+..+.+.+
T Consensus 112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~Lnp~~ee~~~l~~~~ 182 (260)
T PF04641_consen 112 GRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIPLNPPEEELEKLRERM 182 (260)
T ss_pred ceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEEecCCccHHHHHHHHH
Confidence 48999999999964 333 3999999999999873 244699999999987754223 3444444444
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=95.73 E-value=3.9 Score=44.43 Aligned_cols=202 Identities=7% Similarity=0.061 Sum_probs=94.2
Q ss_pred EEecccCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCce-EEEEecccCccceeeeecCceEEEeeCCCeEEEEEeC
Q 001349 849 QQIREHTKAVTGLAILQSGE-MLYSGSLDKTARVWSIGNEEI-HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRN 926 (1094)
Q Consensus 849 ~~l~~H~~~V~sv~fspdg~-~LaSgs~DgtI~vWdi~~~~~-~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~ 926 (1094)
+.+.+-.+.+..++|+|+.+ ++++....+.|...+.+ |++ +.+... .......+. +..++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~-g~~D~EgI~-------y~g~~--------- 76 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLD-GFGDYEGIT-------YLGNG--------- 76 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-S-S-SSEEEEE-------E-STT---------
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCC-CCCCceeEE-------EECCC---------
Confidence 45566667799999999755 55555667778777765 432 222211 112222332 33333
Q ss_pred CeEEEEcCCCCceEEEEeCCEEEEEE-cCCeEEEEECCCCc--e-eEEeccc-eee-cCCCCCeEEEEEeCCccEEEEEE
Q 001349 927 GKTKLLNSSKYPKCLALVQGKVYCGC-QDGAIQEIDLATGT--F-ATIQTGH-RKL-LGKANPVHALQVHNGLVYTASTS 1000 (1094)
Q Consensus 927 g~i~l~~~~~~v~~l~~s~~~l~sgs-~Dg~I~iwDl~~~~--~-~~~~~~~-~~~-~~h~~~V~sl~fs~~~~~las~s 1000 (1094)
.++... .++.+.++++.... . ....... ..+ ..+...+-.++|++.+..+..+-
T Consensus 77 --------------------~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k 136 (248)
T PF06977_consen 77 --------------------RYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK 136 (248)
T ss_dssp --------------------EEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE
T ss_pred --------------------EEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe
Confidence 333333 35666666663221 1 0000000 001 12445688999998644444443
Q ss_pred CCCCEEEEEECCC---CeEEEEe-----c----CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCcEEEEe--cccC
Q 001349 1001 LDGAAVKMWSTSN---YNMVGSL-----P----TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETL--QTGT 1063 (1094)
Q Consensus 1001 ~Dg~~I~iwd~~~---~~~~~~~-----~----~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~~~~~l--~~~h 1063 (1094)
.. .-..+|.+.. ....... . .-..+.+++++|. +++....+..|.++| .+|+.+..+ ..+.
T Consensus 137 E~-~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~ 214 (248)
T PF06977_consen 137 ER-KPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGF 214 (248)
T ss_dssp ES-SSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTG
T ss_pred CC-CChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcc
Confidence 33 2455555542 1111111 1 2355889999987 666777888999999 667766554 2221
Q ss_pred C------cceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001349 1064 S------GKVQCMALDDNEEFLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1064 ~------~~I~~l~~Spdg~~L~sgs~DG~I~iW 1091 (1094)
. ...-.|+|.++|++ +..++-+..++|
T Consensus 215 ~gl~~~~~QpEGIa~d~~G~L-YIvsEpNlfy~f 247 (248)
T PF06977_consen 215 HGLSKDIPQPEGIAFDPDGNL-YIVSEPNLFYRF 247 (248)
T ss_dssp GG-SS---SEEEEEE-TT--E-EEEETTTEEEEE
T ss_pred cCcccccCCccEEEECCCCCE-EEEcCCceEEEe
Confidence 1 25789999999964 445566665554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.26 Score=61.40 Aligned_cols=75 Identities=27% Similarity=0.335 Sum_probs=58.9
Q ss_pred CCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 001349 813 NGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE 888 (1094)
Q Consensus 813 ~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~ 888 (1094)
.+.+.+.+.-.-.++.|+..|.|-..|..++ ..+...-..-.++|++++|+.||..++.|-.+|.|.+||+..++
T Consensus 89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k 163 (1206)
T KOG2079|consen 89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK 163 (1206)
T ss_pred CcceeeeeeeeeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCc
Confidence 4556666666668999999999999988765 12222223346799999999999999999999999999999975
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.62 E-value=5.4 Score=47.02 Aligned_cols=84 Identities=11% Similarity=0.134 Sum_probs=52.6
Q ss_pred EeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcc
Q 001349 989 VHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGK 1066 (1094)
Q Consensus 989 fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~ 1066 (1094)
++.+....+....++ .+.+.+-...+. +...+++..|++||+ +++.-..+|.+.|.+..-.+.+..+..+-...
T Consensus 186 l~~~~~~~i~~~~g~-~i~~i~~~~~~~---i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~ 261 (410)
T PF04841_consen 186 LSSDRVVEILLANGE-TIYIIDENSFKQ---IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSP 261 (410)
T ss_pred eecCcceEEEEecCC-EEEEEEcccccc---ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCC
Confidence 344444444443333 566444332211 334578999999998 78888888999999877666666665444456
Q ss_pred eEEEEEcCCC
Q 001349 1067 VQCMALDDNE 1076 (1094)
Q Consensus 1067 I~~l~~Spdg 1076 (1094)
...+.|.-++
T Consensus 262 p~~~~WCG~d 271 (410)
T PF04841_consen 262 PKQMAWCGND 271 (410)
T ss_pred CcEEEEECCC
Confidence 6777776544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.73 Score=56.63 Aligned_cols=86 Identities=8% Similarity=0.057 Sum_probs=45.1
Q ss_pred EEEEEECCCCe--EEEEecCCCCEEEEEEeCC-EEEEEEcC------CeEEEEECCC-Cc--EEEEecccCCcceEEEEE
Q 001349 1005 AVKMWSTSNYN--MVGSLPTLSEVRAMVVSSE-LVYLGCKG------GTVEIWDQKR-QI--RIETLQTGTSGKVQCMAL 1072 (1094)
Q Consensus 1005 ~I~iwd~~~~~--~~~~~~~~~~v~~l~~spd-~l~sgs~d------g~I~vwd~~t-~~--~~~~l~~~h~~~I~~l~~ 1072 (1094)
.+..||..+.+ .+..+.....-.+++...+ ..+.|+.+ ..+..||..+ .+ .+..+. ........+++
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~-~~r~~~~~~~~ 511 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE-SRLSALHTILH 511 (557)
T ss_pred eEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC-cccccceeEEE
Confidence 57778876643 2233322222223444445 44555543 3477899886 33 333332 12222222333
Q ss_pred cCCCCEEEEEeCCC--cEEEEeC
Q 001349 1073 DDNEEFLVIGTSDG--RIQAWGL 1093 (1094)
Q Consensus 1073 Spdg~~L~sgs~DG--~I~iWdl 1093 (1094)
+|++.++||.|| ++..||.
T Consensus 512 --~~~iyv~Gg~~~~~~~e~yd~ 532 (557)
T PHA02713 512 --DNTIMMLHCYESYMLQDTFNV 532 (557)
T ss_pred --CCEEEEEeeecceeehhhcCc
Confidence 688899999888 5666554
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.62 E-value=3.2 Score=46.62 Aligned_cols=225 Identities=12% Similarity=0.091 Sum_probs=113.0
Q ss_pred ccccccCcEEEEee----------CCCCeEEEeCCcceee-----cccCCC----cEEEEEEeCC----EEEEEECCCeE
Q 001349 779 SPLAFEMVKVLSNG----------HDSSADFWNHRELVHV-----DSSENG----KVLSIACFRD----KIFSGHSDGTI 835 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s----------~dg~I~vWd~~~~~~~-----~~~h~~----~V~~l~fspd----~LaSgs~Dg~I 835 (1094)
..+++|++.+.+++ ..-.|.+||..+.... ...|.. .....+++.| ++.-.+---+|
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SV 120 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSV 120 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEE
T ss_pred eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeE
Confidence 34566777665532 2346789998743211 111111 1122344443 22223334556
Q ss_pred EEEecCCCcceeEEEecccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECC-CCceEEEE--ec-ccCccceeeeecCce
Q 001349 836 KVWTGRGSILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIG-NEEIHCVQ--VH-DIKDQIQNLAVSNSI 910 (1094)
Q Consensus 836 ~vWd~~t~~~~~~~~l~~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~-~~~~~~~~--~~-~~~~~V~~v~~~~~~ 910 (1094)
.|-|+..+ +.+.++. ...++.+ -| .+..+.+-+.||++.-..++ .|+..... .+ ...+++..-
T Consensus 121 tVVDl~~~--kvv~ei~--~PGC~~i--yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~------ 188 (342)
T PF06433_consen 121 TVVDLAAK--KVVGEID--TPGCWLI--YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEH------ 188 (342)
T ss_dssp EEEETTTT--EEEEEEE--GTSEEEE--EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S-------
T ss_pred EEEECCCC--ceeeeec--CCCEEEE--EecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccc------
Confidence 66677766 4555553 1222222 23 23568899999999999888 44432111 11 111222111
Q ss_pred EEEeeCCCeEEEEEeCCeEEEEcCC------------------------CCceEEEEe--CCEEEEEEcC---C------
Q 001349 911 LCFIPQGAGIKVHLRNGKTKLLNSS------------------------KYPKCLALV--QGKVYCGCQD---G------ 955 (1094)
Q Consensus 911 ~~fspdg~~l~~~~~~g~i~l~~~~------------------------~~v~~l~~s--~~~l~sgs~D---g------ 955 (1094)
-.++..+..+...+.+|.+...+.. +.-.-++++ .+++++--.. |
T Consensus 189 ~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpg 268 (342)
T PF06433_consen 189 PAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPG 268 (342)
T ss_dssp -EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-E
T ss_pred cceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCc
Confidence 1133344444445555555544322 223345554 3566553221 1
Q ss_pred -eEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC-ccEEEEEECCCCEEEEEECCCCeEEEEecC
Q 001349 956 -AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG-LVYTASTSLDGAAVKMWSTSNYNMVGSLPT 1022 (1094)
Q Consensus 956 -~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~-~~~las~s~Dg~~I~iwd~~~~~~~~~~~~ 1022 (1094)
.|-+||+.+++.+...... .++.++.++.+ ..++.+.+..++.+.+||..+|+.++++..
T Consensus 269 teVWv~D~~t~krv~Ri~l~-------~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 269 TEVWVYDLKTHKRVARIPLE-------HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE-------EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred eEEEEEECCCCeEEEEEeCC-------CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 3777899999887543311 35778988855 446655554445999999999999999874
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.78 Score=54.26 Aligned_cols=166 Identities=18% Similarity=0.189 Sum_probs=85.5
Q ss_pred cEEEEeeCCCCeEEE-eCCcce-eecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEE
Q 001349 786 VKVLSNGHDSSADFW-NHRELV-HVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAI 863 (1094)
Q Consensus 786 ~~l~s~s~dg~I~vW-d~~~~~-~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~f 863 (1094)
..+|+-..+++|.|+ +++... ..+.. ...+..+-. +.+|...+. +.|.+||+.++ +.++.+... +|..|.|
T Consensus 80 n~yAv~~~~~~I~I~kn~~~~~~k~i~~-~~~~~~If~-G~LL~~~~~-~~i~~yDw~~~--~~i~~i~v~--~vk~V~W 152 (443)
T PF04053_consen 80 NRYAVLESSSTIKIYKNFKNEVVKSIKL-PFSVEKIFG-GNLLGVKSS-DFICFYDWETG--KLIRRIDVS--AVKYVIW 152 (443)
T ss_dssp SEEEEE-TTS-EEEEETTEE-TT------SS-EEEEE--SSSEEEEET-TEEEEE-TTT----EEEEESS---E-EEEEE
T ss_pred ccEEEEECCCeEEEEEcCccccceEEcC-CcccceEEc-CcEEEEECC-CCEEEEEhhHc--ceeeEEecC--CCcEEEE
Confidence 345555557777775 333111 11111 112333322 444444444 48999999999 788888633 4899999
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCC------------ceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEE
Q 001349 864 LQSGEMLYSGSLDKTARVWSIGNE------------EIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL 931 (1094)
Q Consensus 864 spdg~~LaSgs~DgtI~vWdi~~~------------~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l 931 (1094)
+++|++++-.+.| ++.|++.+.. ....+ ++....|.+..|..+...|+..+ .+.. ..+|...+
T Consensus 153 s~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~--~E~~~~IkSg~W~~d~fiYtT~~-~lkY-l~~Ge~~~ 227 (443)
T PF04053_consen 153 SDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELI--HEISERIKSGCWVEDCFIYTTSN-HLKY-LVNGETGI 227 (443)
T ss_dssp -TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEE--EEE-S--SEEEEETTEEEEE-TT-EEEE-EETTEEEE
T ss_pred ECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEE--EEecceeEEEEEEcCEEEEEcCC-eEEE-EEcCCcce
Confidence 9999999999876 6888876654 22222 23366788888877766666665 5554 44444433
Q ss_pred EcC-CCCceEEEEeC--CEEEEEEcCCeEEEEECC
Q 001349 932 LNS-SKYPKCLALVQ--GKVYCGCQDGAIQEIDLA 963 (1094)
Q Consensus 932 ~~~-~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~ 963 (1094)
..+ ...+.-+.+.+ ++++....|+.|..+.+.
T Consensus 228 i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 228 IAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred EEEcCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 332 44555566666 778888888887777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.0025 Score=66.37 Aligned_cols=52 Identities=23% Similarity=0.532 Sum_probs=43.1
Q ss_pred ceeccCccccccCcE----------EcCCcccccHHhHHHHHHhC-CCCCCCCCcCCCCCCCC
Q 001349 163 DFVCPITTHIFDDPV----------TLETGQTYERRAIQEWIERG-NSSCPITRQKLSSTKLP 214 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv----------~~~cGhtfc~~ci~~~~~~~-~~~CP~c~~~~~~~~~~ 214 (1094)
+-.|.||.+-+.+-+ .++|+|.|=..||+.|.--| ..+||-|++....+..+
T Consensus 224 d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmf 286 (328)
T KOG1734|consen 224 DSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMF 286 (328)
T ss_pred cchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhc
Confidence 678999999887766 67999999999999987654 45799999887766554
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.51 E-value=7.2 Score=46.04 Aligned_cols=237 Identities=9% Similarity=0.087 Sum_probs=117.9
Q ss_pred cccccccCcEEEEe-eCC----CCeEEEeCCcceeecccCCC-cEEEEEEeCC---EEEEEECC----------CeEEEE
Q 001349 778 YSPLAFEMVKVLSN-GHD----SSADFWNHRELVHVDSSENG-KVLSIACFRD---KIFSGHSD----------GTIKVW 838 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~-s~d----g~I~vWd~~~~~~~~~~h~~-~V~~l~fspd---~LaSgs~D----------g~I~vW 838 (1094)
...+++++++++.+ +.. ..++++|+.+.......-.. ....+.|.++ ++++...+ ..|+.|
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~ 207 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH 207 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence 45677899988764 333 45899999754333222111 1223999987 45554332 248888
Q ss_pred ecCCCcceeEEEecccCCC--eEEEEEecCCCEEEEEeCC----CcEEEEECCCC-----ceEEEEecccCccceeeeec
Q 001349 839 TGRGSILHLIQQIREHTKA--VTGLAILQSGEMLYSGSLD----KTARVWSIGNE-----EIHCVQVHDIKDQIQNLAVS 907 (1094)
Q Consensus 839 d~~t~~~~~~~~l~~H~~~--V~sv~fspdg~~LaSgs~D----gtI~vWdi~~~-----~~~~~~~~~~~~~V~~v~~~ 907 (1094)
++.+....-...+.+.... ...+..++|+++++..+.. ..+.+-|...+ ....+... ...+...
T Consensus 208 ~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~--~~~~~~~--- 282 (414)
T PF02897_consen 208 KLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPR--EDGVEYY--- 282 (414)
T ss_dssp ETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEES--SSS-EEE---
T ss_pred ECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCC--CCceEEE---
Confidence 9888744423444443333 5678889999987755433 23666676664 12222211 1111110
Q ss_pred CceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEE----EcCCeEEEEECCCCceeEEeccceeecCCCC-
Q 001349 908 NSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCG----CQDGAIQEIDLATGTFATIQTGHRKLLGKAN- 982 (1094)
Q Consensus 908 ~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sg----s~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~- 982 (1094)
+...++.++.- ..++.|...++.+....... ..+..+..
T Consensus 283 ---------------------------------v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~---~~l~~~~~~ 326 (414)
T PF02897_consen 283 ---------------------------------VDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWW---TVLIPEDED 326 (414)
T ss_dssp ---------------------------------EEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEE---EEEE--SSS
T ss_pred ---------------------------------EEccCCEEEEeeCCCCCCcEEEEecccccccccce---eEEcCCCCc
Confidence 11111222221 23355666676665521000 12333433
Q ss_pred -CeEEEEEeCCccEEEEEECCC-CEEEEEECCCCeEEEEec--CCCCEEEEEEeCC----EEEEEEc--CCeEEEEECCC
Q 001349 983 -PVHALQVHNGLVYTASTSLDG-AAVKMWSTSNYNMVGSLP--TLSEVRAMVVSSE----LVYLGCK--GGTVEIWDQKR 1052 (1094)
Q Consensus 983 -~V~sl~fs~~~~~las~s~Dg-~~I~iwd~~~~~~~~~~~--~~~~v~~l~~spd----~l~sgs~--dg~I~vwd~~t 1052 (1094)
.+..+....+..++. ...++ ..|++||+..+.....+. ..+.|..+...++ ++...|. -++++.||+.+
T Consensus 327 ~~l~~~~~~~~~Lvl~-~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t 405 (414)
T PF02897_consen 327 VSLEDVSLFKDYLVLS-YRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLAT 405 (414)
T ss_dssp EEEEEEEEETTEEEEE-EEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTT
T ss_pred eeEEEEEEECCEEEEE-EEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 355555555544433 33332 378999998455555554 3344555544343 3333333 36889999998
Q ss_pred CcEE
Q 001349 1053 QIRI 1056 (1094)
Q Consensus 1053 ~~~~ 1056 (1094)
++..
T Consensus 406 ~~~~ 409 (414)
T PF02897_consen 406 GELT 409 (414)
T ss_dssp TCEE
T ss_pred CCEE
Confidence 8753
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.49 E-value=1.8 Score=47.61 Aligned_cols=271 Identities=15% Similarity=0.208 Sum_probs=154.8
Q ss_pred hccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcChHHHHHHHHhc----------CCChHHHHHhh
Q 001349 322 LFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGLLEAVVLIDLL----------RPSTRTLIEMD 391 (1094)
Q Consensus 322 L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g~~~Aa~~l~~L----------~~~~~~~~~~~ 391 (1094)
|-.+.+..+...+..+|..+....+.... .-+...++.+|.....++-.++.-+ ....++++..+
T Consensus 115 la~~~~~~~l~ksL~al~~lt~~qpdl~d-----a~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~ 189 (461)
T KOG4199|consen 115 LAESPNESVLKKSLEAINSLTHKQPDLFD-----AEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELK 189 (461)
T ss_pred HhhCCchhHHHHHHHHHHHhhcCCcchhc-----cccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 34566777777777777766555442221 1133455566655433333322222 22334556666
Q ss_pred hhHHHHHHHHh-ccccccccccCchhhHHHHHHHHhcCCc----ccccccchhhhccchhHHHHHHhhhcccHHHHHHHH
Q 001349 392 MMESLMTVIKK-KEEDFLKMCLKPKSVSVLLLGQMIGDSE----ESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAV 466 (1094)
Q Consensus 392 ~~~~Ll~~l~~-~~~~~~~~~~~~~~aa~~~l~~l~~~~~----~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 466 (1094)
.+|.++.+|.. |+.+..+-+ ..| +-.|++..| ..-..+++..|..+|++..|++.++.|---.-..-.
T Consensus 190 il~Li~~~l~~~gk~~~VRel----~~a---~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l 262 (461)
T KOG4199|consen 190 ILELILQVLNREGKTRTVREL----YDA---IRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSL 262 (461)
T ss_pred HHHHHHHHHcccCccHHHHHH----HHH---HHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHH
Confidence 66777755544 443222111 112 222333332 222358899999999999999999976543322223
Q ss_pred HHHHHHhhccCcchhhHhhhcCchhHHHHHHh-cCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHH
Q 001349 467 GILLRCMQEDGKCRNSIADKAELAPVMESFMA-ASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVY 545 (1094)
Q Consensus 467 ~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~ 545 (1094)
+.-+.-++-.+...+.|++.+.+..|+.++-+ +.+..|..+=+.|+-|..+ ++...+-..|-+.|+....-+++.-
T Consensus 263 ~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLral---AG~DsvKs~IV~~gg~~~ii~l~~~ 339 (461)
T KOG4199|consen 263 STTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRAL---AGSDSVKSTIVEKGGLDKIITLALR 339 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHH---hCCCchHHHHHHhcChHHHHHHHHH
Confidence 33355667777888899999999999998776 6666675554444444433 2233445556667777665555443
Q ss_pred HhhcCCc-cchhHHHHHHhhhcccCCC-CCCccHHHHHHHHHHHhhcCCC-hHHHHHHHHHHHhcccc
Q 001349 546 LQTANHD-QCPVVAGLLLQLDLLAEPR-KMSIYREEAIDTLISCLRNSDY-PAAQLAAAKTIVSLQGR 610 (1094)
Q Consensus 546 l~~~~~~-~~~~~a~~l~~l~~~~~~~-~~~~~reea~~~~~~~l~~~~~-~~~~~~~~~~~~~l~g~ 610 (1094)
-+..|.- |+.+++.-.|- |-.|. ...++-.++-+..+.+|+..-. ..+|..|+-.+-|+.-|
T Consensus 340 h~~~p~Vi~~~~a~i~~l~---LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r 404 (461)
T KOG4199|consen 340 HSDDPLVIQEVMAIISILC---LRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR 404 (461)
T ss_pred cCCChHHHHHHHHHHHHHH---hcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh
Confidence 3333222 22222222222 23443 2334455677888999998774 36999999888887755
|
|
| >KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.0076 Score=67.44 Aligned_cols=49 Identities=18% Similarity=0.406 Sum_probs=40.3
Q ss_pred CCceeccCccccccCcE-----E---cCCcccccHHhHHHHHHhCC------CCCCCCCcCCC
Q 001349 161 PKDFVCPITTHIFDDPV-----T---LETGQTYERRAIQEWIERGN------SSCPITRQKLS 209 (1094)
Q Consensus 161 ~~~~~CpIc~~~~~dPv-----~---~~cGhtfc~~ci~~~~~~~~------~~CP~c~~~~~ 209 (1094)
-++..|-||++...+++ . .+|-|+||-.||..|-...+ ..||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 34899999999999988 3 46999999999999985433 46999997643
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.73 Score=56.62 Aligned_cols=215 Identities=16% Similarity=0.259 Sum_probs=110.0
Q ss_pred EEEEEECC------CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCC------CcEEEEECCCCceEEE
Q 001349 825 KIFSGHSD------GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD------KTARVWSIGNEEIHCV 892 (1094)
Q Consensus 825 ~LaSgs~D------g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D------gtI~vWdi~~~~~~~~ 892 (1094)
+++.|+.+ .++..+|..++.+.....+.. ...-.++++. +|...++||.| .++..||..++++...
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~-~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~ 364 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPS-PRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV 364 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCCCCc-ccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence 45555555 467888988886666555542 2334445554 56788888888 3456677776643221
Q ss_pred EecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCC-----eEEEEECCCCce
Q 001349 893 QVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDG-----AIQEIDLATGTF 967 (1094)
Q Consensus 893 ~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg-----~I~iwDl~~~~~ 967 (1094)
........-.++ ..-+|.. .++|+.|| +|..||..+.+.
T Consensus 365 a~M~~~R~~~~v--------~~l~g~i----------------------------YavGG~dg~~~l~svE~YDp~~~~W 408 (571)
T KOG4441|consen 365 APMNTKRSDFGV--------AVLDGKL----------------------------YAVGGFDGEKSLNSVECYDPVTNKW 408 (571)
T ss_pred CCccCcccccee--------EEECCEE----------------------------EEEeccccccccccEEEecCCCCcc
Confidence 111100000000 1112222 45555554 588899888765
Q ss_pred eEEeccceeecCCCCCe--EEEEEeCCccEEEEEECCC-----CEEEEEECCCCe--EEEEecCCCCEEEEEEeCC-EEE
Q 001349 968 ATIQTGHRKLLGKANPV--HALQVHNGLVYTASTSLDG-----AAVKMWSTSNYN--MVGSLPTLSEVRAMVVSSE-LVY 1037 (1094)
Q Consensus 968 ~~~~~~~~~~~~h~~~V--~sl~fs~~~~~las~s~Dg-----~~I~iwd~~~~~--~~~~~~~~~~v~~l~~spd-~l~ 1037 (1094)
...-+ ..... ..++...+..| +.|+.++ .++..||..++. .+..+.....-..++.-.+ ..+
T Consensus 409 ~~va~-------m~~~r~~~gv~~~~g~iY-i~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYv 480 (571)
T KOG4441|consen 409 TPVAP-------MLTRRSGHGVAVLGGKLY-IIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYV 480 (571)
T ss_pred cccCC-------CCcceeeeEEEEECCEEE-EEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEE
Confidence 42211 11112 22333344444 4444343 268888887654 2333332222233555555 666
Q ss_pred EEEcCC-----eEEEEECCCCcEEEEec-ccCCcceEEEEEcCCCCEEEEEeCCCc
Q 001349 1038 LGCKGG-----TVEIWDQKRQIRIETLQ-TGTSGKVQCMALDDNEEFLVIGTSDGR 1087 (1094)
Q Consensus 1038 sgs~dg-----~I~vwd~~t~~~~~~l~-~~h~~~I~~l~~Spdg~~L~sgs~DG~ 1087 (1094)
+|+.|+ +|..||..+.+-...-. ......+....+ +++..++|+.||.
T Consensus 481 vGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 481 VGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGN 534 (571)
T ss_pred ECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCc
Confidence 677665 37889988765332211 112222222222 5777888888874
|
|
| >KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.0074 Score=65.01 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=41.4
Q ss_pred CceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCC
Q 001349 162 KDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSS 210 (1094)
Q Consensus 162 ~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~ 210 (1094)
+|-.||||..-=..+|..||||.-|+.||.+|+-+ .+.|=.|+.....
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTVID 468 (489)
T ss_pred ccccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEecceeee
Confidence 47899999998888999999999999999999987 4469999876553
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.29 Score=61.01 Aligned_cols=141 Identities=16% Similarity=0.211 Sum_probs=94.0
Q ss_pred EEEEECCCeEEEEecCCCcceeEEEecccCCC-eEEEEEecC-------CCEEEEEeCCCcEEEEECCCCceEEEEeccc
Q 001349 826 IFSGHSDGTIKVWTGRGSILHLIQQIREHTKA-VTGLAILQS-------GEMLYSGSLDKTARVWSIGNEEIHCVQVHDI 897 (1094)
Q Consensus 826 LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~-V~sv~fspd-------g~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~ 897 (1094)
|........|+-.|+..| +.+..+..|... |..+ .|+ +...+.|-.+..+..||.+-...+.+...
T Consensus 497 l~~~~~~~~ly~mDLe~G--KVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~-- 570 (794)
T PF08553_consen 497 LLDPNNPNKLYKMDLERG--KVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ-- 570 (794)
T ss_pred eecCCCCCceEEEecCCC--cEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeecc--
Confidence 444445678888999999 788888877654 5544 343 33456677778899999885321111100
Q ss_pred CccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEe-CCEEEEEEcCCeEEEEECCCCceeEEecccee
Q 001349 898 KDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV-QGKVYCGCQDGAIQEIDLATGTFATIQTGHRK 976 (1094)
Q Consensus 898 ~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s-~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~ 976 (1094)
.+.+.......|++.. +|+|++|+.+|.|++||- .|... ...
T Consensus 571 -------------------------------~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~A-----KT~ 613 (794)
T PF08553_consen 571 -------------------------------SKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRA-----KTA 613 (794)
T ss_pred -------------------------------ccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhh-----hhc
Confidence 0112233445566655 478999999999999994 33221 134
Q ss_pred ecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEEC
Q 001349 977 LLGKANPVHALQVHNGLVYTASTSLDGAAVKMWST 1011 (1094)
Q Consensus 977 ~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~ 1011 (1094)
+.+-..+|..|..+.||.++++.+. ..+.++++
T Consensus 614 lp~lG~pI~~iDvt~DGkwilaTc~--tyLlLi~t 646 (794)
T PF08553_consen 614 LPGLGDPIIGIDVTADGKWILATCK--TYLLLIDT 646 (794)
T ss_pred CCCCCCCeeEEEecCCCcEEEEeec--ceEEEEEE
Confidence 5566799999999999999888764 37888886
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.051 Score=56.42 Aligned_cols=100 Identities=17% Similarity=0.212 Sum_probs=68.1
Q ss_pred CcEEEEeeCCCCeEEEeCC---cceeecccCCCcEEEEEEeC-C--EEEEEECCCeEEEEecCCCcceeEEEecccC-CC
Q 001349 785 MVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFR-D--KIFSGHSDGTIKVWTGRGSILHLIQQIREHT-KA 857 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~---~~~~~~~~h~~~V~~l~fsp-d--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~-~~ 857 (1094)
+..++.|+.+|.|.+|++. ........-...|.++.-.. + +..+++.||.|+.|++.-+ +.+.....|+ .+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~--k~~g~~g~h~~~~ 147 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN--KVLGYVGQHNFES 147 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccC--ceeeeeccccCCC
Confidence 5688999999999999987 22222222333444443333 3 8999999999999999877 5666666677 45
Q ss_pred eEEEEEecCCCEEEEE--eCCCcEEEEECCC
Q 001349 858 VTGLAILQSGEMLYSG--SLDKTARVWSIGN 886 (1094)
Q Consensus 858 V~sv~fspdg~~LaSg--s~DgtI~vWdi~~ 886 (1094)
+.....+..+..++.+ |.|..++.|++..
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcchhh
Confidence 5555555566666666 6677777777654
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.5 Score=61.59 Aligned_cols=241 Identities=17% Similarity=0.113 Sum_probs=121.3
Q ss_pred HhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCChHHHHHh
Q 001349 315 INGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTLIEM 390 (1094)
Q Consensus 315 ~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~~~~~~~ 390 (1094)
++.+++.| .+.++.|.+.|+..|.++. ....++.|+.+|+.. +..|+..|..+....
T Consensus 623 ~~~L~~~L-~D~d~~VR~~Av~~L~~~~------------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~------ 683 (897)
T PRK13800 623 VAELAPYL-ADPDPGVRRTAVAVLTETT------------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL------ 683 (897)
T ss_pred HHHHHHHh-cCCCHHHHHHHHHHHhhhc------------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc------
Confidence 34455555 4678899999999998773 122457777777554 455555665441100
Q ss_pred hhhHHHHHHHHhccccccccccCchhhHHHH-----------HHHHhcCCcccccccchhhhccchhHHHHHHhhhcccH
Q 001349 391 DMMESLMTVIKKKEEDFLKMCLKPKSVSVLL-----------LGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWA 459 (1094)
Q Consensus 391 ~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~-----------l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 459 (1094)
.-.+.|...|...+.. + +.+|+.. +..++...|.........++.+.+..+.|+..+...+.
T Consensus 684 ~~~~~L~~~L~~~d~~-V------R~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~ 756 (897)
T PRK13800 684 PPAPALRDHLGSPDPV-V------RAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENR 756 (897)
T ss_pred CchHHHHHHhcCCCHH-H------HHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCH
Confidence 0013444444332110 0 1111111 11222323222223334444444555667777777777
Q ss_pred HHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhcc-----------------ccch
Q 001349 460 EERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLN-----------------RRTF 522 (1094)
Q Consensus 460 ~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~-----------------r~~~ 522 (1094)
+-|..++..|...-... ...++.|+.++.......|..|+..|-++-... |..
T Consensus 757 ~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~- 826 (897)
T PRK13800 757 EVRIAVAKGLATLGAGG---------APAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQG- 826 (897)
T ss_pred HHHHHHHHHHHHhcccc---------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHH-
Confidence 77777776655331111 112355666666666666666666664442110 111
Q ss_pred hHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHH
Q 001349 523 NEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAK 602 (1094)
Q Consensus 523 ~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~~~~~~~~~~~ 602 (1094)
+.+.|. .-++-..+..|+..|+...+.=+--+|..|.++.. -..+++.|..+|... ...++..|++
T Consensus 827 Aa~aL~---~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~----------~~~a~~~L~~al~D~-d~~Vr~~A~~ 892 (897)
T PRK13800 827 AARALA---GAAADVAVPALVEALTDPHLDVRKAAVLALTRWPG----------DPAARDALTTALTDS-DADVRAYARR 892 (897)
T ss_pred HHHHHH---hccccchHHHHHHHhcCCCHHHHHHHHHHHhccCC----------CHHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 222222 22233344446666655555555566666666421 245667777677744 4567888887
Q ss_pred HHH
Q 001349 603 TIV 605 (1094)
Q Consensus 603 ~~~ 605 (1094)
+|.
T Consensus 893 aL~ 895 (897)
T PRK13800 893 ALA 895 (897)
T ss_pred HHh
Confidence 774
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.41 Score=58.26 Aligned_cols=126 Identities=10% Similarity=0.070 Sum_probs=76.2
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC
Q 001349 856 KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS 935 (1094)
Q Consensus 856 ~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~ 935 (1094)
....-+.-|.-++.-++-+...++.|||.+.+.+.....+...+.|.++.|. +.|+|+.+...+..+.+.++...
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWt-----st~d~qsiLaVGf~~~v~l~~Q~ 104 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWT-----STPDGQSILAVGFPHHVLLYTQL 104 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceee-----ecCCCCEEEEEEcCcEEEEEEcc
Confidence 3444555555455444444556799999999876666666778889999865 67888876666666655554321
Q ss_pred CCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCC-CCeEEEEEeCCccEEEEEECCCCEEEEEECC
Q 001349 936 KYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKA-NPVHALQVHNGLVYTASTSLDGAAVKMWSTS 1012 (1094)
Q Consensus 936 ~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~-~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~ 1012 (1094)
. ||..+..+....-....+..|+ .+|.+..|.++|.+++++ |+.+.|+|-.
T Consensus 105 R-----------------------~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s---GNqlfv~dk~ 156 (631)
T PF12234_consen 105 R-----------------------YDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS---GNQLFVFDKW 156 (631)
T ss_pred c-----------------------hhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe---CCEEEEECCC
Confidence 1 1111111100000001112222 478899999999988877 5689999753
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=1.2 Score=49.56 Aligned_cols=221 Identities=13% Similarity=0.049 Sum_probs=128.2
Q ss_pred hhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC-----hHHHHHHHHhcCCChH
Q 001349 311 KPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG-----LLEAVVLIDLLRPSTR 385 (1094)
Q Consensus 311 ~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g-----~~~Aa~~l~~L~~~~~ 385 (1094)
.+.++..+.. |..+.++.+...++.+|..|....+. ....++.|..++... ...|+.+|..+.....
T Consensus 52 ~~~~~~~l~~-ll~~~d~~vR~~A~~aLg~lg~~~~~-------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~ 123 (280)
T PRK09687 52 GQDVFRLAIE-LCSSKNPIERDIGADILSQLGMAKRC-------QDNVFNILNNLALEDKSACVRASAINATGHRCKKNP 123 (280)
T ss_pred cchHHHHHHH-HHhCCCHHHHHHHHHHHHhcCCCccc-------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc
Confidence 3445565555 56678999999999999998543321 112446666564332 4577778887754332
Q ss_pred HHHHhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHH
Q 001349 386 TLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAA 465 (1094)
Q Consensus 386 ~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 465 (1094)
+- ....+..|...+...+ . .-+-+++..|.. +-...+++.|+..++..+..-|..|
T Consensus 124 ~~-~~~a~~~l~~~~~D~~-~------~VR~~a~~aLg~----------------~~~~~ai~~L~~~L~d~~~~VR~~A 179 (280)
T PRK09687 124 LY-SPKIVEQSQITAFDKS-T------NVRFAVAFALSV----------------INDEAAIPLLINLLKDPNGDVRNWA 179 (280)
T ss_pred cc-chHHHHHHHHHhhCCC-H------HHHHHHHHHHhc----------------cCCHHHHHHHHHHhcCCCHHHHHHH
Confidence 11 0111122333322221 1 113344444432 2455688999999999999999988
Q ss_pred HHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHH
Q 001349 466 VGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVY 545 (1094)
Q Consensus 466 ~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~ 545 (1094)
+..|-.. .. ......++|+.+|.......|..|+..|-.+ +-...+..+++.++.+
T Consensus 180 ~~aLg~~-~~--------~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~---~~~~av~~Li~~L~~~------------ 235 (280)
T PRK09687 180 AFALNSN-KY--------DNPDIREAFVAMLQDKNEEIRIEAIIGLALR---KDKRVLSVLIKELKKG------------ 235 (280)
T ss_pred HHHHhcC-CC--------CCHHHHHHHHHHhcCCChHHHHHHHHHHHcc---CChhHHHHHHHHHcCC------------
Confidence 8877644 10 0123456788888777888888888877653 1111222333333332
Q ss_pred HhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 001349 546 LQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTI 604 (1094)
Q Consensus 546 l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~~~~~~~~~~~~~ 604 (1094)
. -+--++..|.++.- ++|+..|...+.......++..+-.+|
T Consensus 236 ----~--~~~~a~~ALg~ig~-----------~~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 236 ----T--VGDLIIEAAGELGD-----------KTLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred ----c--hHHHHHHHHHhcCC-----------HhHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 1 11234555555544 579999999998666777777776655
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.16 E-value=1.9 Score=49.68 Aligned_cols=111 Identities=7% Similarity=0.084 Sum_probs=60.6
Q ss_pred eEEEEEeCCccEEEEEECC-------------------CCEEEEEECCCCeEEEEecCC---CCEEEEEEeCC-----EE
Q 001349 984 VHALQVHNGLVYTASTSLD-------------------GAAVKMWSTSNYNMVGSLPTL---SEVRAMVVSSE-----LV 1036 (1094)
Q Consensus 984 V~sl~fs~~~~~las~s~D-------------------g~~I~iwd~~~~~~~~~~~~~---~~v~~l~~spd-----~l 1036 (1094)
-+.+-++|....++|.... |+++.+||+.+.+.++++.-+ ..+..+.|..+ .+
T Consensus 183 gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gF 262 (461)
T PF05694_consen 183 GYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGF 262 (461)
T ss_dssp ---EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEE
T ss_pred CCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceE
Confidence 3456667777777776432 469999999999999999843 33556666544 34
Q ss_pred EEEEcCCeEEEEEC-CCCc----EEEEeccc----C------------CcceEEEEEcCCCCEEEEEeC-CCcEEEEeCC
Q 001349 1037 YLGCKGGTVEIWDQ-KRQI----RIETLQTG----T------------SGKVQCMALDDNEEFLVIGTS-DGRIQAWGLS 1094 (1094)
Q Consensus 1037 ~sgs~dg~I~vwd~-~t~~----~~~~l~~~----h------------~~~I~~l~~Spdg~~L~sgs~-DG~I~iWdls 1094 (1094)
+.+.-.++|..|-. ..++ .+..+... - ..-|++|.+|.|.++|..++. +|.|+.|||+
T Consensus 263 vg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 263 VGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp EEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred EEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence 44444555655544 3332 22222110 0 235899999999999987764 8999999985
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG0825 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.0047 Score=72.87 Aligned_cols=48 Identities=17% Similarity=0.466 Sum_probs=39.7
Q ss_pred ceeccCccccccCcEE---cCCcccccHHhHHHHHHhCCCCCCCCCcCCCCC
Q 001349 163 DFVCPITTHIFDDPVT---LETGQTYERRAIQEWIERGNSSCPITRQKLSST 211 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~---~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~ 211 (1094)
.-.||+|+.-+.|-.+ ..|+|-||..||..|-.. ..+||.||..+...
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGEV 173 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhhee
Confidence 4579999999998765 379999999999999876 55899999877543
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.53 Score=43.80 Aligned_cols=89 Identities=20% Similarity=0.303 Sum_probs=64.6
Q ss_pred cEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEe
Q 001349 786 VKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAIL 864 (1094)
Q Consensus 786 ~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fs 864 (1094)
+.|+.|+.|..|++|+-...+.... .++.|++++-... .++.+..+|+|-+|+-... ++.++... .++++.+.
T Consensus 16 ~eLlvGs~D~~IRvf~~~e~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~R----lWRiKSK~-~~~~~~~~ 89 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGDEIVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDRSQR----LWRIKSKN-QVTSMAFY 89 (111)
T ss_pred ceEEEecCCcEEEEEeCCcEEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeCcce----eeeeccCC-CeEEEEEE
Confidence 4899999999999999887665554 3567778877764 9999999999999987543 44554333 36666665
Q ss_pred c-C--C-CEEEEEeCCCcEE
Q 001349 865 Q-S--G-EMLYSGSLDKTAR 880 (1094)
Q Consensus 865 p-d--g-~~LaSgs~DgtI~ 880 (1094)
. + | .-|++|=.+|.|-
T Consensus 90 D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 90 DINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cCCCCCceEEEEEecCCeEE
Confidence 3 3 2 3678887788664
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.02 E-value=4.2 Score=45.74 Aligned_cols=208 Identities=10% Similarity=0.084 Sum_probs=109.2
Q ss_pred EEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEe-CC-EEEEEECCCeEEEEecCCCcc-eeEEEec-cc-CCCeEEE
Q 001349 787 KVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACF-RD-KIFSGHSDGTIKVWTGRGSIL-HLIQQIR-EH-TKAVTGL 861 (1094)
Q Consensus 787 ~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fs-pd-~LaSgs~Dg~I~vWd~~t~~~-~~~~~l~-~H-~~~V~sv 861 (1094)
.+.+--..+.|.-|+..........+.+.+.++... .+ .|+++ ..| +.+++..++.. ..+.... +. ...-+.+
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~-~~g-~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~ 116 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIAC-EHG-VRLLDPDTGGKITLLAEPEDGLPLNRPNDG 116 (307)
T ss_pred EEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEE-ccc-cEEEeccCCceeEEeccccCCCCcCCCCce
Confidence 455556667888888764433333444445555444 34 44443 333 56677766532 2222221 11 1345678
Q ss_pred EEecCCCEEEEEeCC---------CcEEEEECC-CCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEE
Q 001349 862 AILQSGEMLYSGSLD---------KTARVWSIG-NEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL 931 (1094)
Q Consensus 862 ~fspdg~~LaSgs~D---------gtI~vWdi~-~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l 931 (1094)
...|+|.+.++.... ..=.+|-++ .+....+ +..--..++.++||||++.+.+..
T Consensus 117 ~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l--------~~~~~~~~NGla~SpDg~tly~aD------- 181 (307)
T COG3386 117 VVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRL--------LDDDLTIPNGLAFSPDGKTLYVAD------- 181 (307)
T ss_pred eEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEe--------ecCcEEecCceEECCCCCEEEEEe-------
Confidence 888998877765440 011333333 2211111 111012345667888887643322
Q ss_pred EcCCCCceEEEEeCCEEEEEEcCCeEEEEECCC--CceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEE
Q 001349 932 LNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT--GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMW 1009 (1094)
Q Consensus 932 ~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~--~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iw 1009 (1094)
+..+.|+-|++.. +..... .....+....+..-.++...++.+-+++..+|..|..|
T Consensus 182 --------------------T~~~~i~r~~~d~~~g~~~~~-~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~ 240 (307)
T COG3386 182 --------------------TPANRIHRYDLDPATGPIGGR-RGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRF 240 (307)
T ss_pred --------------------CCCCeEEEEecCcccCccCCc-ceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEE
Confidence 2334555555431 111000 00011112334556777877777776555555589999
Q ss_pred ECCCCeEEEEecCC-CCEEEEEEeC
Q 001349 1010 STSNYNMVGSLPTL-SEVRAMVVSS 1033 (1094)
Q Consensus 1010 d~~~~~~~~~~~~~-~~v~~l~~sp 1033 (1094)
+.. ++.+..+.-+ ..+++++|-.
T Consensus 241 ~pd-G~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 241 NPD-GKLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred CCC-CcEEEEEECCCCCCccceEeC
Confidence 998 9999888855 7888888865
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.99 E-value=14 Score=46.42 Aligned_cols=107 Identities=9% Similarity=0.109 Sum_probs=68.0
Q ss_pred CeEEEEEeCC-ccEEEEEE---------CCCCEEEEEECCCCeEEEEe---cCCCCEEEEEEeCCEEEEEEcCCeEEEEE
Q 001349 983 PVHALQVHNG-LVYTASTS---------LDGAAVKMWSTSNYNMVGSL---PTLSEVRAMVVSSELVYLGCKGGTVEIWD 1049 (1094)
Q Consensus 983 ~V~sl~fs~~-~~~las~s---------~Dg~~I~iwd~~~~~~~~~~---~~~~~v~~l~~spd~l~sgs~dg~I~vwd 1049 (1094)
.+.+..|..| +.+++.|. +..+.|.+|....++.+... .-.+.+.++..-.+.++ ++-+..|++|+
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkll-A~In~~vrLye 854 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLL-AGINQSVRLYE 854 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEE-EecCcEEEEEE
Confidence 3555567655 55555542 11236777766653322222 23455555554444333 34567899999
Q ss_pred CCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001349 1050 QKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1050 ~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iW 1091 (1094)
..+.+.++.- ..|..++..+...-.|..++.|..-+.|.+-
T Consensus 855 ~t~~~eLr~e-~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll 895 (1096)
T KOG1897|consen 855 WTTERELRIE-CNISNPIIALDLQVKGDEIAVGDLMRSITLL 895 (1096)
T ss_pred ccccceehhh-hcccCCeEEEEEEecCcEEEEeeccceEEEE
Confidence 9988766655 5677889999999899999999887777653
|
|
| >COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.036 Score=64.41 Aligned_cols=75 Identities=23% Similarity=0.373 Sum_probs=66.6
Q ss_pred CCCCCCceeccCccccccCcEEc-CCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHhCCC
Q 001349 157 KHTPPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPG 233 (1094)
Q Consensus 157 ~~~~~~~~~CpIc~~~~~dPv~~-~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~~~~ 233 (1094)
..++|++|.-|....+|+|||++ ..|-+..|.-|..++-. ..+.|.-|.+++.+++. ||-.|++-|..+....+.
T Consensus 848 ~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls-d~tDPFNRmPLtlddVt-pn~eLrekIn~f~k~k~~ 923 (929)
T COG5113 848 MGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS-DGTDPFNRMPLTLDDVT-PNAELREKINRFYKCKGQ 923 (929)
T ss_pred ccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc-CCCCccccCCCchhhcC-CCHHHHHHHHHHHhcccc
Confidence 45789999999999999999998 58899999999998876 44799999999999997 999999999999875443
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.91 Score=49.49 Aligned_cols=210 Identities=15% Similarity=0.139 Sum_probs=124.1
Q ss_pred HHHHHHHHHhhhccccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccc
Q 001349 266 ITELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRD 345 (1094)
Q Consensus 266 ~~~l~~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~ 345 (1094)
..+++..+.-|..++...-++.++..+-..+.-.-....|-..+..+ ++.-++.+.++.+++.|+..|-+++..
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~-----lI~~lL~~p~~~vr~~AL~aL~Nls~~- 84 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGIS-----LIGSLLNDPNPSVREKALNALNNLSVN- 84 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHH-----HHHHHcCCCChHHHHHHHHHHHhcCCC-
Confidence 46777777777766554445666666555432221112233333333 333466678999999999999999544
Q ss_pred cchhhhhccCCCcHHHHHHHHhcC------hHHHHHHHHhcCCChHHHHHhh-hhHHHHHHHHhccccccccccCchhhH
Q 001349 346 KSVIHTLTRVESDVERIVALFKKG------LLEAVVLIDLLRPSTRTLIEMD-MMESLMTVIKKKEEDFLKMCLKPKSVS 418 (1094)
Q Consensus 346 ~~~~~~i~~~~~~~~~L~~lLk~g------~~~Aa~~l~~L~~~~~~~~~~~-~~~~Ll~~l~~~~~~~~~~~~~~~~aa 418 (1094)
..+...|.. .++.+.....++ -..+-.+|.+|...+..-..+. .+|.++++|.+|++.. +.-+
T Consensus 85 ~en~~~Ik~---~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~-------k~~v 154 (254)
T PF04826_consen 85 DENQEQIKM---YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKT-------KVQV 154 (254)
T ss_pred hhhHHHHHH---HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHH-------HHHH
Confidence 334444432 345555544443 2345568899977664333333 4599999999996532 3345
Q ss_pred HHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcch--hhHhhhcCchhHHHHH
Q 001349 419 VLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCR--NSIADKAELAPVMESF 496 (1094)
Q Consensus 419 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r--~~~~~~~~~~~~~~l~ 496 (1094)
+.+|-.| +-|+.....+.+..+++.++..+.....++-..-+-.+..++...-.=+ -++-+.....+|.-++
T Consensus 155 Lk~L~nL------S~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~ 228 (254)
T PF04826_consen 155 LKVLVNL------SENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLF 228 (254)
T ss_pred HHHHHHh------ccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHH
Confidence 5555554 7788888999999999999999987655553332223333332221111 1233455666777555
Q ss_pred H
Q 001349 497 M 497 (1094)
Q Consensus 497 ~ 497 (1094)
+
T Consensus 229 ~ 229 (254)
T PF04826_consen 229 G 229 (254)
T ss_pred c
Confidence 5
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.51 Score=50.59 Aligned_cols=211 Identities=14% Similarity=0.186 Sum_probs=106.5
Q ss_pred EEeCC--EEEEEE-----CCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEE-ECCCCceEE
Q 001349 820 ACFRD--KIFSGH-----SDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVW-SIGNEEIHC 891 (1094)
Q Consensus 820 ~fspd--~LaSgs-----~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vW-di~~~~~~~ 891 (1094)
.||+| +|+..- ..|.|-|||...+ +..+.++..|.-.-..+.|.+||+.++.+.. -|..- |...-++
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~-fqrvgE~~t~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~l-- 194 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG-FQRVGEFSTHGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTEL-- 194 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccc-cceecccccCCcCcceeEEecCCcEEEEeCC--ceecccccCcccc--
Confidence 47887 555443 2388999999854 5677888888888899999999999987653 34443 2211100
Q ss_pred EEecccCccceeeeecCceEEEe-eCCCeEEEEEeCCeEEEEcCCCCceEEEEe-CCEEEEEEcC------CeEEEEECC
Q 001349 892 VQVHDIKDQIQNLAVSNSILCFI-PQGAGIKVHLRNGKTKLLNSSKYPKCLALV-QGKVYCGCQD------GAIQEIDLA 963 (1094)
Q Consensus 892 ~~~~~~~~~V~~v~~~~~~~~fs-pdg~~l~~~~~~g~i~l~~~~~~v~~l~~s-~~~l~sgs~D------g~I~iwDl~ 963 (1094)
.+.++. |+..... .+|+.+-- .++---...-.++.+... +|.+..|+.- .---+=-..
T Consensus 195 --------NldsMe--PSlvlld~atG~liek----h~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~ 260 (366)
T COG3490 195 --------NLDSME--PSLVLLDAATGNLIEK----HTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFR 260 (366)
T ss_pred --------chhhcC--ccEEEEeccccchhhh----ccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeecc
Confidence 000000 0001111 12211100 000000001112222222 1222222210 000000001
Q ss_pred CCceeEEeccc-eeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCCEEEEEEcC
Q 001349 964 TGTFATIQTGH-RKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSELVYLGCKG 1042 (1094)
Q Consensus 964 ~~~~~~~~~~~-~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd~l~sgs~d 1042 (1094)
.++.+..+... .........|-+++.+.+..+++..++.|+...+||..+|..+..-.- .....++.....+++.+.+
T Consensus 261 ~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l-~daaGva~~~~gf~vssg~ 339 (366)
T COG3490 261 KGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL-PDAAGVAAAKGGFAVSSGQ 339 (366)
T ss_pred CCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc-cccccceeccCceEEecCC
Confidence 12211111100 111122345778888877777788888888999999999987654331 1233455555678888888
Q ss_pred CeEEEEEC
Q 001349 1043 GTVEIWDQ 1050 (1094)
Q Consensus 1043 g~I~vwd~ 1050 (1094)
|.+..+..
T Consensus 340 G~~~~~s~ 347 (366)
T COG3490 340 GRIIFYSR 347 (366)
T ss_pred ceEEeccc
Confidence 98887743
|
|
| >KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.016 Score=65.29 Aligned_cols=49 Identities=18% Similarity=0.435 Sum_probs=37.7
Q ss_pred CceeccCcccccc-----------------CcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCC
Q 001349 162 KDFVCPITTHIFD-----------------DPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSS 210 (1094)
Q Consensus 162 ~~~~CpIc~~~~~-----------------dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~ 210 (1094)
..--|+||+.... +-+.+||-|.|-+.|+++|.+.-+-.||+||.+++.
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 3567999986431 133469999999999999999545579999998864
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.13 Score=60.45 Aligned_cols=91 Identities=13% Similarity=0.233 Sum_probs=76.6
Q ss_pred CCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEE-EEEEeCC--EEEEEEcCCeEEEEECCCCcEEE
Q 001349 982 NPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVR-AMVVSSE--LVYLGCKGGTVEIWDQKRQIRIE 1057 (1094)
Q Consensus 982 ~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~-~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~ 1057 (1094)
..+.-+.|+|.-.++|.+..+| .|-+..+. .+.+.+++ ++.+++ +++|.|| .+++|-.||+|++.|+.++..+.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~g-elli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKG-ELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcCccchhheeccCC-cEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4577889999999999998887 89898887 88888888 777777 9999999 89999999999999999999888
Q ss_pred EecccCCcceEEEEEcC
Q 001349 1058 TLQTGTSGKVQCMALDD 1074 (1094)
Q Consensus 1058 ~l~~~h~~~I~~l~~Sp 1074 (1094)
.+.......|+++-|++
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 74334556788888863
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=3.4 Score=50.91 Aligned_cols=198 Identities=13% Similarity=0.130 Sum_probs=106.9
Q ss_pred ccCCCeEEEEEecCCCEEEEEe------CCCcEEEEECCCC-ceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEe
Q 001349 853 EHTKAVTGLAILQSGEMLYSGS------LDKTARVWSIGNE-EIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR 925 (1094)
Q Consensus 853 ~H~~~V~sv~fspdg~~LaSgs------~DgtI~vWdi~~~-~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~ 925 (1094)
+....+.+.+++|||+.++..- .|+.-.+|-...+ ....+. . ......- .|+|||..+.+...
T Consensus 347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt-~--g~~~t~P-------sWspDG~~lw~v~d 416 (591)
T PRK13616 347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVL-E--GHSLTRP-------SWSLDADAVWVVVD 416 (591)
T ss_pred ccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeee-c--CCCCCCc-------eECCCCCceEEEec
Confidence 3334678999999999887665 2444444543222 222221 1 1112222 38999887665542
Q ss_pred CCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCE
Q 001349 926 NGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAA 1005 (1094)
Q Consensus 926 ~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~ 1005 (1094)
...+. .+......+.+.+.++..+... . .....|..+.|++|+..++... +| .
T Consensus 417 g~~~~----------------~v~~~~~~gql~~~~vd~ge~~------~---~~~g~Issl~wSpDG~RiA~i~-~g-~ 469 (591)
T PRK13616 417 GNTVV----------------RVIRDPATGQLARTPVDASAVA------S---RVPGPISELQLSRDGVRAAMII-GG-K 469 (591)
T ss_pred CcceE----------------EEeccCCCceEEEEeccCchhh------h---ccCCCcCeEEECCCCCEEEEEE-CC-E
Confidence 21110 1222223456666677665542 1 2345799999999999887765 34 6
Q ss_pred EEE---EECCCCeE-E---EEec-C-CCCEEEEEEeCC-EEEEEEcCCeEEEEECCC-CcEEEEecc-cCCcceEEEEEc
Q 001349 1006 VKM---WSTSNYNM-V---GSLP-T-LSEVRAMVVSSE-LVYLGCKGGTVEIWDQKR-QIRIETLQT-GTSGKVQCMALD 1073 (1094)
Q Consensus 1006 I~i---wd~~~~~~-~---~~~~-~-~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t-~~~~~~l~~-~h~~~I~~l~~S 1073 (1094)
|.+ -....|.. + ..+. . ...+..+.|.++ .|+++..++...+|.+.- |.....+.. .....+..++=+
T Consensus 470 v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~ 549 (591)
T PRK13616 470 VYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAAS 549 (591)
T ss_pred EEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecC
Confidence 766 44344531 1 1122 1 233688999888 566666655555565432 222122111 124567777777
Q ss_pred CCCCEEEEEeCCCcEE
Q 001349 1074 DNEEFLVIGTSDGRIQ 1089 (1094)
Q Consensus 1074 pdg~~L~sgs~DG~I~ 1089 (1094)
++ .++..+.+|.+.
T Consensus 550 ~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 550 PS--TVYVTDARAVLQ 563 (591)
T ss_pred Cc--eEEEEcCCceEE
Confidence 63 466666676443
|
|
| >KOG3039 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.021 Score=58.81 Aligned_cols=39 Identities=28% Similarity=0.417 Sum_probs=33.0
Q ss_pred CCCCCCceeccCccccccCcEEcCCcccccHHhHHHHHH
Q 001349 157 KHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIE 195 (1094)
Q Consensus 157 ~~~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~ 195 (1094)
...+-+.-.|.+|++.+.|||+++-||-|||.||.+++-
T Consensus 37 rDsiK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 37 RDSIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred ccccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 334444667899999999999999999999999999764
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=94.55 E-value=12 Score=47.69 Aligned_cols=213 Identities=9% Similarity=0.059 Sum_probs=112.2
Q ss_pred CCEEEEEECCCeEEEEecCCCcceeEEEecccCCC--------eEEEEEec----------------CCCEEEEEeCCCc
Q 001349 823 RDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKA--------VTGLAILQ----------------SGEMLYSGSLDKT 878 (1094)
Q Consensus 823 pd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~--------V~sv~fsp----------------dg~~LaSgs~Dgt 878 (1094)
.+.++.++.++.|.-.|..+| +.+..+..+... ...+++.. ++..++.++.|+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TG--k~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~ 271 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATG--KEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDAR 271 (764)
T ss_pred CCEEEEECCCCeEEEEECCCC--cEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCe
Confidence 467888888888888898888 566665432211 11222221 3447888888999
Q ss_pred EEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEc-----
Q 001349 879 ARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQ----- 953 (1094)
Q Consensus 879 I~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~----- 953 (1094)
+.-.|.++|+... .+.....+. +. .. +.-.+.+.+ . .-..-.+.++.+++|+.
T Consensus 272 LiALDA~TGk~~W--~fg~~G~vd-l~--~~-~g~~~~g~~-------------~---~ts~P~V~~g~VIvG~~v~d~~ 329 (764)
T TIGR03074 272 LIALDADTGKLCE--DFGNNGTVD-LT--AG-MGTTPPGYY-------------Y---PTSPPLVAGTTVVIGGRVADNY 329 (764)
T ss_pred EEEEECCCCCEEE--EecCCCcee-ee--cc-cCcCCCccc-------------c---cccCCEEECCEEEEEecccccc
Confidence 9888988885221 111111110 00 00 000000000 0 00001122455666643
Q ss_pred -----CCeEEEEECCCCceeEEeccce-----------eecCCCCCe-EEEEEeCCccE--EEEEE--------------
Q 001349 954 -----DGAIQEIDLATGTFATIQTGHR-----------KLLGKANPV-HALQVHNGLVY--TASTS-------------- 1000 (1094)
Q Consensus 954 -----Dg~I~iwDl~~~~~~~~~~~~~-----------~~~~h~~~V-~sl~fs~~~~~--las~s-------------- 1000 (1094)
+|.|+-+|.++|+....+.... .+..-...+ ..+++++.... +-++.
T Consensus 330 ~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~ 409 (764)
T TIGR03074 330 STDEPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPAD 409 (764)
T ss_pred cccCCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCc
Confidence 6889999999999886543210 000000111 22333332221 11110
Q ss_pred -CCCCEEEEEECCCCeEEEEecC-CC---------CEE--EEEE-eCC---EEEEEEcCCeEEEEECCCCcEEEEe
Q 001349 1001 -LDGAAVKMWSTSNYNMVGSLPT-LS---------EVR--AMVV-SSE---LVYLGCKGGTVEIWDQKRQIRIETL 1059 (1094)
Q Consensus 1001 -~Dg~~I~iwd~~~~~~~~~~~~-~~---------~v~--~l~~-spd---~l~sgs~dg~I~vwd~~t~~~~~~l 1059 (1094)
.-...|.-.|.++|+....+.. +. ... .+.. ... .++.++.+|.++++|..+|+.+...
T Consensus 410 n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 410 EKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred ccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 0013778889999998887762 11 111 2222 221 6888999999999999999988764
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=94.48 E-value=12 Score=43.07 Aligned_cols=91 Identities=5% Similarity=-0.054 Sum_probs=40.3
Q ss_pred ccccccCcEEEEeeC-CCCeEEEeC--Cc-ceeecccCC-CcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEe
Q 001349 779 SPLAFEMVKVLSNGH-DSSADFWNH--RE-LVHVDSSEN-GKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQI 851 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~-dg~I~vWd~--~~-~~~~~~~h~-~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l 851 (1094)
.++..||++++.++. ||.-.+|-+ .+ .+..+..+. ........+++ .++-...+..++--|+.+.+...+..+
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence 445668876655544 666666644 32 222222222 22223445554 444444556788889999854445444
Q ss_pred cccCCCeEEEEEe--cCCCEEE
Q 001349 852 REHTKAVTGLAIL--QSGEMLY 871 (1094)
Q Consensus 852 ~~H~~~V~sv~fs--pdg~~La 871 (1094)
....+-...|. .|+..++
T Consensus 121 --p~~~~g~gt~v~n~d~t~~~ 140 (386)
T PF14583_consen 121 --PDDWKGYGTWVANSDCTKLV 140 (386)
T ss_dssp ---TTEEEEEEEEE-TTSSEEE
T ss_pred --CcccccccceeeCCCccEEE
Confidence 45555445554 3555544
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=94.44 E-value=2.8 Score=51.59 Aligned_cols=191 Identities=18% Similarity=0.184 Sum_probs=96.3
Q ss_pred CCcEEEEEEeCC--EEEEEE------CCC--eEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCC-CcEEE
Q 001349 813 NGKVLSIACFRD--KIFSGH------SDG--TIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD-KTARV 881 (1094)
Q Consensus 813 ~~~V~~l~fspd--~LaSgs------~Dg--~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D-gtI~v 881 (1094)
...+...+.+|+ .++..- .|+ .|.+++..+. ......+. ..+.-.|+|||..|++.+.. ..+++
T Consensus 349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~---~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV---AVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc---ceeeecCC--CCCCceECCCCCceEEEecCcceEEE
Confidence 346788888986 333322 243 4555565332 22222232 37788999999988877643 22222
Q ss_pred E-----------ECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEE
Q 001349 882 W-----------SIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYC 950 (1094)
Q Consensus 882 W-----------di~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~s 950 (1094)
. +++.++... .....|..+. |+|||..++... +|.+.+- .+.
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~----~~~g~Issl~-------wSpDG~RiA~i~-~g~v~Va---------------~Vv 476 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS----RVPGPISELQ-------LSRDGVRAAMII-GGKVYLA---------------VVE 476 (591)
T ss_pred eccCCCceEEEEeccCchhhh----ccCCCcCeEE-------ECCCCCEEEEEE-CCEEEEE---------------EEE
Confidence 2 333332111 2244566666 999999877644 2222110 011
Q ss_pred EEcCCeEEEEECCCCceeEEeccceee-cCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecC---CCCE
Q 001349 951 GCQDGAIQEIDLATGTFATIQTGHRKL-LGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT---LSEV 1026 (1094)
Q Consensus 951 gs~Dg~I~iwDl~~~~~~~~~~~~~~~-~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~---~~~v 1026 (1094)
-..+|..++=+ . ..+ .+-...+.++.|.+++.+++.....+..+...++. |.....+.. ...+
T Consensus 477 r~~~G~~~l~~---~---------~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vD-G~~~~~~~~~n~~~~v 543 (591)
T PRK13616 477 QTEDGQYALTN---P---------REVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLD-GSNSDALPSRNLSAPV 543 (591)
T ss_pred eCCCCceeecc---c---------EEeecccCCccccceEecCCEEEEEecCCCCceEEEecC-CccccccCCCCccCce
Confidence 12233322211 0 111 12223457889998887665543222234333443 222222232 4567
Q ss_pred EEEEEeCCEEEEEEcCCeEEEE
Q 001349 1027 RAMVVSSELVYLGCKGGTVEIW 1048 (1094)
Q Consensus 1027 ~~l~~spd~l~sgs~dg~I~vw 1048 (1094)
..++-+++.++....+|.+.+=
T Consensus 544 ~~vaa~~~~iyv~~~~g~~~l~ 565 (591)
T PRK13616 544 VAVAASPSTVYVTDARAVLQLP 565 (591)
T ss_pred EEEecCCceEEEEcCCceEEec
Confidence 7777777777777777755443
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.99 Score=50.41 Aligned_cols=188 Identities=10% Similarity=0.098 Sum_probs=126.3
Q ss_pred cccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCc
Q 001349 279 SEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESD 358 (1094)
Q Consensus 279 s~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~ 358 (1094)
+..+++.++|+-.+..++...+..-.+...+.-.+++. .+.+.+..+.+.|..+|...+.+|+.+-+.+.
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~-----~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~----- 163 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLG-----YLENSDAELRELAARVIGTAVQNNPKSQEQVI----- 163 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH-----HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHH-----
Confidence 34466678888888888776654444444443333222 55578899999999999999888874444433
Q ss_pred HHHHHHHHhcChHHHHHHHHhcCCChHHHHHhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccch
Q 001349 359 VERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIA 438 (1094)
Q Consensus 359 ~~~L~~lLk~g~~~Aa~~l~~L~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~ 438 (1094)
.-+.++.|+..|...+.. +.+..|++.+..|+-.+ .-.-
T Consensus 164 ------------------------------E~~~L~~Ll~~ls~~~~~------~~r~kaL~AissLIRn~-----~~g~ 202 (342)
T KOG2160|consen 164 ------------------------------ELGALSKLLKILSSDDPN------TVRTKALFAISSLIRNN-----KPGQ 202 (342)
T ss_pred ------------------------------HcccHHHHHHHHccCCCc------hHHHHHHHHHHHHHhcC-----cHHH
Confidence 223345555555533211 33556666666664333 2334
Q ss_pred hhhccchhHHHHHHhhhc--ccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHh
Q 001349 439 NTIVSSKVFESVISSLEA--EWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVK 516 (1094)
Q Consensus 439 ~~~~~~~~~~~l~~~l~~--~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~ 516 (1094)
....+.+|..+|..+++. .++.-+.-++.++-..++.+.+-+..+...+-...++.+..+.....++.++..+.+++.
T Consensus 203 ~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 203 DEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 456778899999999998 566667778888888889988888877777777777777777788888888766666554
Q ss_pred c
Q 001349 517 L 517 (1094)
Q Consensus 517 ~ 517 (1094)
.
T Consensus 283 ~ 283 (342)
T KOG2160|consen 283 E 283 (342)
T ss_pred H
Confidence 3
|
|
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.0089 Score=73.42 Aligned_cols=49 Identities=22% Similarity=0.479 Sum_probs=40.6
Q ss_pred eeccCccccccCcEEcCCcccccHHhHHHHHHhCC-CCCCCCCcCCCCCCC
Q 001349 164 FVCPITTHIFDDPVTLETGQTYERRAIQEWIERGN-SSCPITRQKLSSTKL 213 (1094)
Q Consensus 164 ~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~-~~CP~c~~~~~~~~~ 213 (1094)
+.|+||.+ ..+|+++.|||.||+.|+...++... ..||.|+..+....+
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l 504 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKL 504 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHH
Confidence 89999999 88899999999999999999777533 359999977654433
|
|
| >COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.038 Score=46.72 Aligned_cols=44 Identities=23% Similarity=0.597 Sum_probs=33.3
Q ss_pred eccCccccccC----cEEc-CCcccccHHhHHHHHHhCCCCCCCCCcCCC
Q 001349 165 VCPITTHIFDD----PVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLS 209 (1094)
Q Consensus 165 ~CpIc~~~~~d----Pv~~-~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~ 209 (1094)
.||-|+.-|.. ||.- -|.|.|=..||.+|++. ...||.+++...
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~ 81 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWV 81 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeE
Confidence 46666654421 4544 79999999999999998 557999998754
|
|
| >KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.017 Score=63.34 Aligned_cols=48 Identities=19% Similarity=0.421 Sum_probs=40.5
Q ss_pred eccCccccccCcEEcCCcccccHHhHHHHHHhC-CCCCCCCCcCCCCCC
Q 001349 165 VCPITTHIFDDPVTLETGQTYERRAIQEWIERG-NSSCPITRQKLSSTK 212 (1094)
Q Consensus 165 ~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~-~~~CP~c~~~~~~~~ 212 (1094)
.|-||-+-=+|=-+-+|||-.|-.|+..|.... ..+||.||..+....
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 699999999987777999999999999998643 568999998776543
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=94.27 E-value=13 Score=42.61 Aligned_cols=73 Identities=22% Similarity=0.274 Sum_probs=44.8
Q ss_pred EEEecCCCCEEEEEEeCC---------EEEEEEcCCeEEEEECCCCcEE---EEecccCCcceEEEEEcCCCCEEEEEeC
Q 001349 1017 VGSLPTLSEVRAMVVSSE---------LVYLGCKGGTVEIWDQKRQIRI---ETLQTGTSGKVQCMALDDNEEFLVIGTS 1084 (1094)
Q Consensus 1017 ~~~~~~~~~v~~l~~spd---------~l~sgs~dg~I~vwd~~t~~~~---~~l~~~h~~~I~~l~~Spdg~~L~sgs~ 1084 (1094)
...+.++..+..+.|-.. ++++.-..+.|....+..+..+ ..+......++.++++.|||.+.++.+.
T Consensus 246 ~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~ 325 (331)
T PF07995_consen 246 VFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDS 325 (331)
T ss_dssp SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-T
T ss_pred ceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECC
Confidence 344455667777777532 3444444567888777654322 2222344558999999999999998888
Q ss_pred CCcEE
Q 001349 1085 DGRIQ 1089 (1094)
Q Consensus 1085 DG~I~ 1089 (1094)
+|.|.
T Consensus 326 ~G~iy 330 (331)
T PF07995_consen 326 DGKIY 330 (331)
T ss_dssp TTTEE
T ss_pred CCeEe
Confidence 99874
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.027 Score=43.62 Aligned_cols=43 Identities=23% Similarity=0.435 Sum_probs=21.7
Q ss_pred ccCccccccC--cEEc--CCcccccHHhHHHHHHhCCCCCCCCCcCC
Q 001349 166 CPITTHIFDD--PVTL--ETGQTYERRAIQEWIERGNSSCPITRQKL 208 (1094)
Q Consensus 166 CpIc~~~~~d--Pv~~--~cGhtfc~~ci~~~~~~~~~~CP~c~~~~ 208 (1094)
||+|.+.|.. --.. +||+-.|+.|..+..+.....||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 7888887722 1122 69999999999888876567899999865
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=94.22 E-value=11 Score=44.80 Aligned_cols=133 Identities=11% Similarity=0.108 Sum_probs=80.4
Q ss_pred cCCCcEEEEEEeC----C--EEEEEECCCeEEEEecC-----CCcceeEEEecccCC--C--eEEEEEecCCCEEEEEeC
Q 001349 811 SENGKVLSIACFR----D--KIFSGHSDGTIKVWTGR-----GSILHLIQQIREHTK--A--VTGLAILQSGEMLYSGSL 875 (1094)
Q Consensus 811 ~h~~~V~~l~fsp----d--~LaSgs~Dg~I~vWd~~-----t~~~~~~~~l~~H~~--~--V~sv~fspdg~~LaSgs~ 875 (1094)
|.-..|..+.|.| + .+.+......|.||-+. ++++..-++- +... + -..+.|+|....|+.-..
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtc-Ei~e~~pvLpQGCVWHPk~~iL~VLT~ 132 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTC-EIREPFPVLPQGCVWHPKKAILTVLTA 132 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeee-eccCCcccCCCcccccCCCceEEEEec
Confidence 4556799999998 2 55556667889999875 2221111111 1111 1 135679998888877666
Q ss_pred CCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCC-eEEEEc----------------CCCCc
Q 001349 876 DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNG-KTKLLN----------------SSKYP 938 (1094)
Q Consensus 876 DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g-~i~l~~----------------~~~~v 938 (1094)
+..-.+.++.....+........+.|.+.. |..||+.++++..+. +..+|| ..++|
T Consensus 133 ~dvSV~~sV~~d~srVkaDi~~~G~IhCAC-------WT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~I 205 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADIKTSGLIHCAC-------WTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYI 205 (671)
T ss_pred CceeEeeeeeeCCceEEEeccCCceEEEEE-------ecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCce
Confidence 554456666655444444445566677665 999999888776552 345665 34567
Q ss_pred eEEEEeC-CEEEEE
Q 001349 939 KCLALVQ-GKVYCG 951 (1094)
Q Consensus 939 ~~l~~s~-~~l~sg 951 (1094)
+++.... ..++++
T Consensus 206 csi~AT~dsqVAva 219 (671)
T PF15390_consen 206 CSIEATVDSQVAVA 219 (671)
T ss_pred EEEEEeccceEEEE
Confidence 7766543 334443
|
|
| >KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.032 Score=59.50 Aligned_cols=49 Identities=18% Similarity=0.358 Sum_probs=38.4
Q ss_pred eccCccc-cccCcEE----cCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCC
Q 001349 165 VCPITTH-IFDDPVT----LETGQTYERRAIQEWIERGNSSCPITRQKLSSTKL 213 (1094)
Q Consensus 165 ~CpIc~~-~~~dPv~----~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~ 213 (1094)
.||+|.. .+..|-+ -+|||+.|..|.-..+..|...||.|+..+....+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence 3888863 3444532 28999999999999999988899999998876554
|
|
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.29 Score=55.64 Aligned_cols=178 Identities=19% Similarity=0.257 Sum_probs=114.2
Q ss_pred CchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC---hHHHHH-HHHhcCCChHHHHHhhhh---HHHHH
Q 001349 326 VDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG---LLEAVV-LIDLLRPSTRTLIEMDMM---ESLMT 398 (1094)
Q Consensus 326 ~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g---~~~Aa~-~l~~L~~~~~~~~~~~~~---~~Ll~ 398 (1094)
+.+++.++|+++|+||...-+ +-.+.. ...-+.-||..|.+. ..-+.. .|..|+-.++|+..|+.. .-|+.
T Consensus 275 KQeqLLrva~ylLlNlAed~~-~ElKMr-rkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~k 352 (791)
T KOG1222|consen 275 KQEQLLRVAVYLLLNLAEDIS-VELKMR-RKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLK 352 (791)
T ss_pred HHHHHHHHHHHHHHHHhhhhh-HHHHHH-HHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHH
Confidence 357889999999999954311 111111 112235666777554 222222 566677788888887765 67777
Q ss_pred HHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCc
Q 001349 399 VIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGK 478 (1094)
Q Consensus 399 ~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~ 478 (1094)
++.....+. ..+.++++ |.++.....+..+|..|-+|.|+..+.+.+-.+ .|+.+|- -|..|+.
T Consensus 353 lfp~~h~dL-------~~~tl~Ll------fNlSFD~glr~KMv~~GllP~l~~ll~~d~~~~--iA~~~lY-h~S~dD~ 416 (791)
T KOG1222|consen 353 LFPIQHPDL-------RKATLMLL------FNLSFDSGLRPKMVNGGLLPHLASLLDSDTKHG--IALNMLY-HLSCDDD 416 (791)
T ss_pred hcCCCCHHH-------HHHHHHHh------hhccccccccHHHhhccchHHHHHHhCCcccch--hhhhhhh-hhccCcH
Confidence 665543332 23344444 455777899999999999999999997655544 3333333 3466889
Q ss_pred chhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhccccc
Q 001349 479 CRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRT 521 (1094)
Q Consensus 479 ~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r~~ 521 (1094)
.+.|.+....++-+...+-+++...-..++-.|.-=++++||.
T Consensus 417 ~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRN 459 (791)
T KOG1222|consen 417 AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRN 459 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcccc
Confidence 9999999999999998777776665544533333333666664
|
|
| >KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.033 Score=61.44 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=38.4
Q ss_pred ceeccCccccccCcEEcCCccc-ccHHhHHHHHHhCCCCCCCCCcCCCC
Q 001349 163 DFVCPITTHIFDDPVTLETGQT-YERRAIQEWIERGNSSCPITRQKLSS 210 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~~cGht-fc~~ci~~~~~~~~~~CP~c~~~~~~ 210 (1094)
--.|-||+.--+|-+++||-|. .|..|-.... ..+..||+||+++..
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-YQTNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHH-HhhcCCCccccchHh
Confidence 4679999999999999999995 5999977643 325579999998754
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.93 E-value=2.2 Score=52.34 Aligned_cols=65 Identities=11% Similarity=0.165 Sum_probs=35.3
Q ss_pred CCEEEEEECCC------eEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCC-----CcEEEEECCCCce
Q 001349 823 RDKIFSGHSDG------TIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD-----KTARVWSIGNEEI 889 (1094)
Q Consensus 823 pd~LaSgs~Dg------~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D-----gtI~vWdi~~~~~ 889 (1094)
...++.|+.++ .+..||..++.+..+..+.........+. -++...+.||.+ .++..||..++++
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 33666666442 57788888875544333321222222222 267777778765 2466677766543
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.16 Score=63.13 Aligned_cols=98 Identities=21% Similarity=0.410 Sum_probs=72.2
Q ss_pred ccCcEEEEeeCCCCeEEEeCCc-ce--eecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCC
Q 001349 783 FEMVKVLSNGHDSSADFWNHRE-LV--HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKA 857 (1094)
Q Consensus 783 ~d~~~l~s~s~dg~I~vWd~~~-~~--~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~ 857 (1094)
..+..++.|+..|.+-..|+.. .. .....-.++|++++|+.+ .++.|-.+|.|.+||+.++ +.++.+..|..+
T Consensus 97 ~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~--k~l~~i~e~~ap 174 (1206)
T KOG2079|consen 97 IVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA--KILKVITEHGAP 174 (1206)
T ss_pred eeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC--cceeeeeecCCc
Confidence 3455678888888888777763 22 222334689999999987 8899999999999999998 677777777776
Q ss_pred eEEEEEe---cCCCEEEEEeCCCcEEEEEC
Q 001349 858 VTGLAIL---QSGEMLYSGSLDKTARVWSI 884 (1094)
Q Consensus 858 V~sv~fs---pdg~~LaSgs~DgtI~vWdi 884 (1094)
++++-++ .++..++++..-|. +|..
T Consensus 175 ~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 175 VTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 6655443 45667888777775 6654
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.64 Score=53.85 Aligned_cols=145 Identities=14% Similarity=0.153 Sum_probs=94.8
Q ss_pred EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCC--EE-----EEEeCCCcEEEEECCCCceEEEEeccc
Q 001349 825 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE--ML-----YSGSLDKTARVWSIGNEEIHCVQVHDI 897 (1094)
Q Consensus 825 ~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~--~L-----aSgs~DgtI~vWdi~~~~~~~~~~~~~ 897 (1094)
++.++.....++--|+..| +.+.++.-|.+ |+-+.+.|+.+ .+ +.|=.|..|.-||.+-.....+...
T Consensus 348 il~~~~~~~~l~klDIE~G--KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~-- 422 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERG--KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV-- 422 (644)
T ss_pred EeeCCCCcCcceeeecccc--eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee--
Confidence 6667777788888899999 77888876666 78888888643 22 3455577888898874321100000
Q ss_pred CccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEE-eCCEEEEEEcCCeEEEEECCCCceeEEecccee
Q 001349 898 KDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLAL-VQGKVYCGCQDGAIQEIDLATGTFATIQTGHRK 976 (1094)
Q Consensus 898 ~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~-s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~ 976 (1094)
+++ -|.....-.|.+. .+|.|++|+.+|.|++||- .+.... ..
T Consensus 423 ------------------q~k------------qy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AK-----TA 466 (644)
T KOG2395|consen 423 ------------------QSK------------QYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAK-----TA 466 (644)
T ss_pred ------------------ecc------------ccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhh-----hc
Confidence 000 0111222334443 3578999999999999996 443321 34
Q ss_pred ecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECC
Q 001349 977 LLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS 1012 (1094)
Q Consensus 977 ~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~ 1012 (1094)
+.+-..+|..+..+.+|.++++.+. .++.+-++.
T Consensus 467 lPgLG~~I~hVdvtadGKwil~Tc~--tyLlLi~t~ 500 (644)
T KOG2395|consen 467 LPGLGDAIKHVDVTADGKWILATCK--TYLLLIDTL 500 (644)
T ss_pred ccccCCceeeEEeeccCcEEEEecc--cEEEEEEEe
Confidence 5677789999999999998877653 377777763
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.013 Score=70.51 Aligned_cols=87 Identities=16% Similarity=0.171 Sum_probs=53.2
Q ss_pred CCeEEEeCCc---------ceeecccCCCcEEEEEEeC---C--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEE
Q 001349 795 SSADFWNHRE---------LVHVDSSENGKVLSIACFR---D--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTG 860 (1094)
Q Consensus 795 g~I~vWd~~~---------~~~~~~~h~~~V~~l~fsp---d--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~s 860 (1094)
|...||+++. .++....-...+.-|.|.| + ++..+-.+|+|++-++.+. ....+.+|..+++.
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra---~~~l~rsHs~~~~d 229 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRA---LRSLFRSHSQRVTD 229 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechH---HHHHHHhcCCCccc
Confidence 4556787751 1122223344456666665 3 8888889999999877765 22455679888888
Q ss_pred EEE-----------ecCCCEEEEEeCCCcEEEEEC
Q 001349 861 LAI-----------LQSGEMLYSGSLDKTARVWSI 884 (1094)
Q Consensus 861 v~f-----------spdg~~LaSgs~DgtI~vWdi 884 (1094)
++| ||||..++.++.||.++.|.+
T Consensus 230 ~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 230 MAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred HHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 776 455555555555555555543
|
|
| >PF14447 Prok-RING_4: Prokaryotic RING finger family 4 | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.042 Score=43.54 Aligned_cols=47 Identities=11% Similarity=0.164 Sum_probs=37.7
Q ss_pred ceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCC
Q 001349 163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTK 212 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~ 212 (1094)
+..|-.|...-...++++|||--|+.|..-+ ....||.|++++...+
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPFEFDD 53 (55)
T ss_pred ceeEEEccccccccccccccceeeccccChh---hccCCCCCCCcccCCC
Confidence 5678888888888999999999999997543 2335999999987654
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.60 E-value=11 Score=47.37 Aligned_cols=144 Identities=14% Similarity=0.077 Sum_probs=85.9
Q ss_pred CceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEE--ECCCC
Q 001349 937 YPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMW--STSNY 1014 (1094)
Q Consensus 937 ~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iw--d~~~~ 1014 (1094)
.+.++...+|+++ ++-+..|++|+..+++.+ +.-..|..++..+...-.+..++.+..-+ .+.+. +-..|
T Consensus 831 av~aL~~fngkll-A~In~~vrLye~t~~~eL------r~e~~~~~~~~aL~l~v~gdeI~VgDlm~-Sitll~y~~~eg 902 (1096)
T KOG1897|consen 831 AVYALVEFNGKLL-AGINQSVRLYEWTTEREL------RIECNISNPIIALDLQVKGDEIAVGDLMR-SITLLQYKGDEG 902 (1096)
T ss_pred ceeehhhhCCeEE-EecCcEEEEEEcccccee------hhhhcccCCeEEEEEEecCcEEEEeeccc-eEEEEEEeccCC
Confidence 3444444455554 446789999999988665 34455677888888877777777775443 44443 33333
Q ss_pred eEEEEe--cCCCCEEEEEEeCC-EEEEEEcCCeEEEEECCC-------------------CcEEEEecccCCcceEEE--
Q 001349 1015 NMVGSL--PTLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKR-------------------QIRIETLQTGTSGKVQCM-- 1070 (1094)
Q Consensus 1015 ~~~~~~--~~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t-------------------~~~~~~l~~~h~~~I~~l-- 1070 (1094)
...-.- -++.+.+++.+-.+ .++.+..+|.+.+-..++ |+.+..+ .|..-|..+
T Consensus 903 ~f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f--~hg~lv~~~~~ 980 (1096)
T KOG1897|consen 903 NFEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKF--RHGSLVMQLGD 980 (1096)
T ss_pred ceEEeehhhCccceeeEEEecCceEEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceeee--eecceEeeccc
Confidence 333222 26778888877655 555555667777664332 2233333 244445441
Q ss_pred EEcCCCCEEEEEeCCCcEEE
Q 001349 1071 ALDDNEEFLVIGTSDGRIQA 1090 (1094)
Q Consensus 1071 ~~Spdg~~L~sgs~DG~I~i 1090 (1094)
..+|-+..+..|+.+|.|-+
T Consensus 981 s~~~~~~~vlfgTv~GsIG~ 1000 (1096)
T KOG1897|consen 981 SMIPLEPKVLFGTVNGSIGI 1000 (1096)
T ss_pred cccCCCCcEEEEEccceEEE
Confidence 33455566888889998865
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.59 E-value=3.2 Score=50.39 Aligned_cols=204 Identities=14% Similarity=0.136 Sum_probs=103.1
Q ss_pred CCCcEEEEEEeCCEEEE-EECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceE
Q 001349 812 ENGKVLSIACFRDKIFS-GHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIH 890 (1094)
Q Consensus 812 h~~~V~~l~fspd~LaS-gs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~ 890 (1094)
.-+++.++..+|..+.. .+.--.|+|++..+. .+..+.-..+.+-.+.|+.+ ..|+....||+++||++-.....
T Consensus 42 p~gGpIAV~r~p~~~~~~~~a~~~I~If~~sG~---lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie 117 (829)
T KOG2280|consen 42 PFGGPIAVTRSPSKLVPLYSARPYIRIFNISGQ---LLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIE 117 (829)
T ss_pred ccCCceEEEecccccccccccceeEEEEecccc---chHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhhc
Confidence 34445566666642221 134457899998765 44444434447888999865 55667889999999999775433
Q ss_pred EE--EecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC---------CC------CceEEEEe-CCEEEEEE
Q 001349 891 CV--QVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS---------SK------YPKCLALV-QGKVYCGC 952 (1094)
Q Consensus 891 ~~--~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~---------~~------~v~~l~~s-~~~l~sgs 952 (1094)
.. ........|....+.. +++++...+|.+.+.+. .. ...|.... +++-.++-
T Consensus 118 ~~svg~e~~~~~I~ec~~f~---------~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~l 188 (829)
T KOG2280|consen 118 SNSVGFESQMSDIVECRFFH---------NGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTIL 188 (829)
T ss_pred ccccccccccCceeEEEEec---------CceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeE
Confidence 21 1111222233333222 33444444444433321 11 11233322 21110000
Q ss_pred cCCe----EEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec--CCCCE
Q 001349 953 QDGA----IQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP--TLSEV 1026 (1094)
Q Consensus 953 ~Dg~----I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~--~~~~v 1026 (1094)
-|-- ..++....+.... ..+..-...+.-+.++++..+++-...+| .|.+-+....+....+. .+...
T Consensus 189 l~v~~~v~~~~~q~~~~~~q~-----~~~~~~~~~~~ki~VS~n~~~laLyt~~G-~i~~vs~D~~~~lce~~~~~~~~p 262 (829)
T KOG2280|consen 189 LDVDVAVGLHICQVEESRVQL-----HALSWPNSSVVKISVSPNRRFLALYTETG-KIWVVSIDLSQILCEFNCTDHDPP 262 (829)
T ss_pred Eeechhhhhcccceecccccc-----cccCCCCceEEEEEEcCCcceEEEEecCC-cEEEEecchhhhhhccCCCCCCch
Confidence 0000 0111111111100 11111124677888899999999988887 77777777666666665 33444
Q ss_pred EEEEEeCC
Q 001349 1027 RAMVVSSE 1034 (1094)
Q Consensus 1027 ~~l~~spd 1034 (1094)
..++|.++
T Consensus 263 ~qm~Wcgn 270 (829)
T KOG2280|consen 263 KQMAWCGN 270 (829)
T ss_pred HhceeecC
Confidence 46677655
|
|
| >KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.04 Score=60.79 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=37.0
Q ss_pred CCCCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCC
Q 001349 158 HTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLS 209 (1094)
Q Consensus 158 ~~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~ 209 (1094)
.+.|....|-||.+-..+.+-++|||..| |+.-... ...||+||+.+.
T Consensus 300 ~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 300 RELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH--LPQCPVCRQRIR 347 (355)
T ss_pred cccCCCCceEEecCCccceeeecCCcEEE--chHHHhh--CCCCchhHHHHH
Confidence 34455778999999999999999999988 7554322 335999998754
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=93.47 E-value=13 Score=40.45 Aligned_cols=119 Identities=13% Similarity=0.214 Sum_probs=79.4
Q ss_pred CCCceEEEE-eCCEEEEEE-cCC--eEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEE
Q 001349 935 SKYPKCLAL-VQGKVYCGC-QDG--AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWS 1010 (1094)
Q Consensus 935 ~~~v~~l~~-s~~~l~sgs-~Dg--~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd 1010 (1094)
......+.| .++.++-++ .-| .|+.+|+.+|+......-. ...---.++...+..+..+. .+ +...+||
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~-----~~~FgEGit~~~d~l~qLTW-k~-~~~f~yd 116 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP-----PRYFGEGITILGDKLYQLTW-KE-GTGFVYD 116 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T-----TT--EEEEEEETTEEEEEES-SS-SEEEEEE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC-----ccccceeEEEECCEEEEEEe-cC-CeEEEEc
Confidence 445566777 566665443 333 7999999999876432211 11223456666777776665 33 4999999
Q ss_pred CCCCeEEEEecCCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEec
Q 001349 1011 TSNYNMVGSLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQ 1060 (1094)
Q Consensus 1011 ~~~~~~~~~~~~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~ 1060 (1094)
..+.+.+.++...+.-+.++...+.++.......++++|..+.+....+.
T Consensus 117 ~~tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 117 PNTLKKIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp TTTTEEEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred cccceEEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEE
Confidence 99999999999777888899888888888888899999999887766653
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.058 Score=60.23 Aligned_cols=45 Identities=24% Similarity=0.552 Sum_probs=38.6
Q ss_pred CceeccCccccccC---cEEcCCcccccHHhHHHHHHhCC--CCCCCCCc
Q 001349 162 KDFVCPITTHIFDD---PVTLETGQTYERRAIQEWIERGN--SSCPITRQ 206 (1094)
Q Consensus 162 ~~~~CpIc~~~~~d---Pv~~~cGhtfc~~ci~~~~~~~~--~~CP~c~~ 206 (1094)
.-|.|||-.+--.| |+.+.|||.-|+..|.+....|. ..||.|-.
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 35899999988776 89999999999999999888776 56999954
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.16 E-value=1.5 Score=53.62 Aligned_cols=203 Identities=11% Similarity=0.107 Sum_probs=130.1
Q ss_pred hHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----------hHHHHHHHHhcCCChHHHHHhhhhHHHH
Q 001349 328 PRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----------LLEAVVLIDLLRPSTRTLIEMDMMESLM 397 (1094)
Q Consensus 328 ~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----------~~~Aa~~l~~L~~~~~~~~~~~~~~~Ll 397 (1094)
..|..++..+|+|+++...+.++++..-+|-|+.|+..++.- +..+.++|.+|++.-+.-+.....+.+-
T Consensus 388 ~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~ 467 (717)
T KOG1048|consen 388 STVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLA 467 (717)
T ss_pred ceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhh
Confidence 577899999999999988889999999999999999888632 7788889999977554211111110000
Q ss_pred HH------------H-Hhc--ccc------c------------cccccCc------------------hhhHHHHHHHHh
Q 001349 398 TV------------I-KKK--EED------F------------LKMCLKP------------------KSVSVLLLGQMI 426 (1094)
Q Consensus 398 ~~------------l-~~~--~~~------~------------~~~~~~~------------------~~aa~~~l~~l~ 426 (1094)
+. . +.+ +++ . .-++-.| -.|+.-+|.+|
T Consensus 468 ~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNl- 546 (717)
T KOG1048|consen 468 NIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNL- 546 (717)
T ss_pred cccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhh-
Confidence 00 0 000 000 0 0000001 15666666555
Q ss_pred cCCcccccccchhhh-ccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCch--
Q 001349 427 GDSEESIVSSIANTI-VSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGE-- 503 (1094)
Q Consensus 427 ~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~-- 503 (1094)
+++.---....+..+ ..+.|++.|+++|++++.+....+++ +|++|..|-.-+..|+ ..+++-|++.|.....+.
T Consensus 547 tA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~-~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~ 624 (717)
T KOG1048|consen 547 TAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAG-ALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSL 624 (717)
T ss_pred hccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHH-HHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCc
Confidence 444333333444455 89999999999999999998876555 5678899999999999 889999999998865511
Q ss_pred ---hH-HHHHHHHHHHhccccchhHHHHHHhhhcCcchh
Q 001349 504 ---RF-EIVCFLSELVKLNRRTFNEQILHIIKDEGTYSS 538 (1094)
Q Consensus 504 ---~~-~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~ 538 (1094)
-. .+...|.|++.- ..+.-+.+-+-++++.
T Consensus 625 sedtv~~vc~tl~niv~~-----~~~nAkdl~~~~g~~k 658 (717)
T KOG1048|consen 625 SEDTVRAVCHTLNNIVRK-----NVLNAKDLLEIKGIPK 658 (717)
T ss_pred hHHHHHHHHHhHHHHHHH-----hHHHHHHHHhccChHH
Confidence 11 225556666543 2333344555556665
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.21 Score=52.02 Aligned_cols=136 Identities=13% Similarity=0.143 Sum_probs=81.2
Q ss_pred EEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCC-eEEEEec-CCCC
Q 001349 948 VYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY-NMVGSLP-TLSE 1025 (1094)
Q Consensus 948 l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~-~~~~~~~-~~~~ 1025 (1094)
+..-+.||.|.-++++..+.... ...-|... ........-+++|+.+| .|.+|+..-. .....+. ....
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~r-----se~~~~e~---~~v~~~~~~~~vG~~dg-~v~~~n~n~~g~~~d~~~s~~e~ 103 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCR-----SERFIDEG---QRVVTASAKLMVGTSDG-AVYVFNWNLEGAHSDRVCSGEES 103 (238)
T ss_pred hccccCCcccccchhhhhhhhhh-----hhhhhhcc---eeecccCceEEeecccc-eEEEecCCccchHHHhhhccccc
Confidence 44556788888887765433210 00111111 11122334456666776 9999987621 1111111 2233
Q ss_pred EEEEEEeC-C--EEEEEEcCCeEEEEECCCCcEEEEecccCC-cceEEEEEcCCCCEEEEE--eCCCcEEEEeC
Q 001349 1026 VRAMVVSS-E--LVYLGCKGGTVEIWDQKRQIRIETLQTGTS-GKVQCMALDDNEEFLVIG--TSDGRIQAWGL 1093 (1094)
Q Consensus 1026 v~~l~~sp-d--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~-~~I~~l~~Spdg~~L~sg--s~DG~I~iWdl 1093 (1094)
+.++.... + +.++++.||.|+-|++.-++.+... ..|. .++.....+..+++++.+ |.|..++.|++
T Consensus 104 i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~-g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 104 IDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV-GQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred ceeccccccccceeEEeccCCceeeeccccCceeeee-ccccCCCcceeEEecCCceEEeeccccchhhhhcch
Confidence 33333332 3 7888999999999999988877766 4666 566666666667777777 77888888876
|
|
| >KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.078 Score=59.68 Aligned_cols=64 Identities=20% Similarity=0.363 Sum_probs=51.1
Q ss_pred ceeccCccccccC------cEEcCCcccccHHhHHHHHHhCCCCCCCCCcCC--CC---CCCCChhHHHHHHHHHH
Q 001349 163 DFVCPITTHIFDD------PVTLETGQTYERRAIQEWIERGNSSCPITRQKL--SS---TKLPKTNYVLKRLIASW 227 (1094)
Q Consensus 163 ~~~CpIc~~~~~d------Pv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~--~~---~~~~~pN~~l~~~i~~~ 227 (1094)
.+.|-||.+-|.. |-++.|||++|..|+...+..+...||.||.+. .. ..+. .|+.+-.+++..
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~-kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQ-KNFALLQAIEHM 77 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhh-hhHHHHHHHHHH
Confidence 3568888887764 777889999999999998887777799999983 32 3355 899999998876
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.42 Score=58.16 Aligned_cols=156 Identities=15% Similarity=0.141 Sum_probs=113.8
Q ss_pred hchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccc----cchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhc
Q 001349 309 LSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRD----KSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLL 380 (1094)
Q Consensus 309 ~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~----~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L 380 (1094)
+-.|.|+.--+..|-.|.+..++|++.-+|=++...+ ..++..+.+....+++|+.+|+.+ +-.|+.+|.+|
T Consensus 514 Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNl 593 (717)
T KOG1048|consen 514 LWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNL 593 (717)
T ss_pred eecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhh
Confidence 3455677766778888999999999999999998653 346677778888999999999998 55677799999
Q ss_pred CCChHHHHHhhh--hHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhccc
Q 001349 381 RPSTRTLIEMDM--MESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEW 458 (1094)
Q Consensus 381 ~~~~~~~~~~~~--~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 458 (1094)
+....|+.-|+. +|-||+.|..+.-.. .+.-.--.+..+.|..++ ..+..|++.+...+|++.|+-+.+.-.
T Consensus 594 s~d~rnk~ligk~a~~~lv~~Lp~~~~~~-~~sedtv~~vc~tl~niv-----~~~~~nAkdl~~~~g~~kL~~I~~s~~ 667 (717)
T KOG1048|consen 594 SRDIRNKELIGKYAIPDLVRCLPGSGPST-SLSEDTVRAVCHTLNNIV-----RKNVLNAKDLLEIKGIPKLRLISKSQH 667 (717)
T ss_pred ccCchhhhhhhcchHHHHHHhCcCCCCCc-CchHHHHHHHHHhHHHHH-----HHhHHHHHHHHhccChHHHHHHhcccC
Confidence 998888888884 499999999874310 000011244555566662 456799999999999999999988633
Q ss_pred HHHHHHHHHHHH
Q 001349 459 AEERIAAVGILL 470 (1094)
Q Consensus 459 ~~~~~~~~~~l~ 470 (1094)
-..-..||+.++
T Consensus 668 S~k~~kaAs~vL 679 (717)
T KOG1048|consen 668 SPKEFKAASSVL 679 (717)
T ss_pred CHHHHHHHHHHH
Confidence 323333444444
|
|
| >KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.02 Score=60.61 Aligned_cols=42 Identities=29% Similarity=0.402 Sum_probs=34.5
Q ss_pred ceeccCccccccCcEEcCCcccc-cHHhHHHHHHhCCCCCCCCCcCCC
Q 001349 163 DFVCPITTHIFDDPVTLETGQTY-ERRAIQEWIERGNSSCPITRQKLS 209 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~~cGhtf-c~~ci~~~~~~~~~~CP~c~~~~~ 209 (1094)
+.+|.||++.-.|=|.++|||.- |..|-.+ -..||+||+.+.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr-----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR-----MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccc-----cccCchHHHHHH
Confidence 78999999999999999999955 8888432 226999998653
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.13 Score=38.77 Aligned_cols=39 Identities=15% Similarity=0.032 Sum_probs=34.9
Q ss_pred cccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHH
Q 001349 434 VSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRC 472 (1094)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~ 472 (1094)
+++++..+++.|++|.|+.+++.++.+-+..|+..|..+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNL 39 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 357888999999999999999999999999999988765
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.046 Score=63.70 Aligned_cols=58 Identities=31% Similarity=0.563 Sum_probs=41.1
Q ss_pred ceeccCcccccc----CcEEcCCcccccHHhHHHHHHhCCCCCCCCCcC-----CCCCCCCChhHHHHHHHH
Q 001349 163 DFVCPITTHIFD----DPVTLETGQTYERRAIQEWIERGNSSCPITRQK-----LSSTKLPKTNYVLKRLIA 225 (1094)
Q Consensus 163 ~~~CpIc~~~~~----dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~-----~~~~~~~~pN~~l~~~i~ 225 (1094)
-+.|+||...|. .||.+-||||.|+.|.+.-.+. +|| |... ...+..+ -|++|-+.+.
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp-~~~De~~~~~~~~e~p-~n~alL~~~~ 77 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCP-TKRDEDSSLMQLKEEP-RNYALLRREH 77 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCC-CCccccchhcChhhcc-hhHHHHHhhc
Confidence 678999977664 5999999999999999986543 688 4321 2333454 5777765544
|
|
| >KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.038 Score=46.31 Aligned_cols=47 Identities=26% Similarity=0.512 Sum_probs=34.9
Q ss_pred ceeccCccccccC-cEEc-CCcccccHHhHHHHHHhC--CCCCCCCCcCCC
Q 001349 163 DFVCPITTHIFDD-PVTL-ETGQTYERRAIQEWIERG--NSSCPITRQKLS 209 (1094)
Q Consensus 163 ~~~CpIc~~~~~d-Pv~~-~cGhtfc~~ci~~~~~~~--~~~CP~c~~~~~ 209 (1094)
+-.||-|.-.=.| |.++ -|-|.|=..||.+|+... +..||+||+...
T Consensus 31 dg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 31 DGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 4456666655555 5555 799999999999999853 345999998764
|
|
| >KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.082 Score=58.25 Aligned_cols=52 Identities=19% Similarity=0.429 Sum_probs=37.9
Q ss_pred ceeccCccccccCcE---Ec-CCcccccHHhHHHHHHhCC--CCCCCCCcCCCCCCCC
Q 001349 163 DFVCPITTHIFDDPV---TL-ETGQTYERRAIQEWIERGN--SSCPITRQKLSSTKLP 214 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv---~~-~cGhtfc~~ci~~~~~~~~--~~CP~c~~~~~~~~~~ 214 (1094)
-..|.||-+.+-.-- .+ .|||+|--.|++.|++... +.||+|+-.+....++
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~~ 61 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHVA 61 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccceeee
Confidence 467999966653211 13 5999999999999998643 4799999666665554
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.52 E-value=5.9 Score=48.59 Aligned_cols=107 Identities=10% Similarity=0.029 Sum_probs=54.5
Q ss_pred cccCcEEEEeeCCC------CeEEEeCCcceee----cccCCCcEEEEEEeCCEEEEEECC-----CeEEEEecCCCcce
Q 001349 782 AFEMVKVLSNGHDS------SADFWNHRELVHV----DSSENGKVLSIACFRDKIFSGHSD-----GTIKVWTGRGSILH 846 (1094)
Q Consensus 782 ~~d~~~l~s~s~dg------~I~vWd~~~~~~~----~~~h~~~V~~l~fspd~LaSgs~D-----g~I~vWd~~t~~~~ 846 (1094)
..++..++.||.++ .+..||..+.... ..........+.+....++.|+.+ .++..||..++.+.
T Consensus 292 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 292 VLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred EECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 34556667777643 4556665421111 111122223333433466667655 35778998888665
Q ss_pred eEEEecccCCCeEEEEEecCCCEEEEEeCC------CcEEEEECCCCceE
Q 001349 847 LIQQIREHTKAVTGLAILQSGEMLYSGSLD------KTARVWSIGNEEIH 890 (1094)
Q Consensus 847 ~~~~l~~H~~~V~sv~fspdg~~LaSgs~D------gtI~vWdi~~~~~~ 890 (1094)
....+...... .+++. -+++..+.||.+ ..+..||..++++.
T Consensus 372 ~~~~lp~~r~~-~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 372 EEPPLIFPRYN-PCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred eCCCcCcCCcc-ceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 54433211111 12222 356777777632 35778888776543
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.36 E-value=15 Score=38.70 Aligned_cols=47 Identities=6% Similarity=0.086 Sum_probs=34.5
Q ss_pred EEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC
Q 001349 987 LQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE 1034 (1094)
Q Consensus 987 l~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd 1034 (1094)
++++.++.+.+++-. |++|.-.|..+|+.+..+. ....+++++|-..
T Consensus 217 m~ID~eG~L~Va~~n-g~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFN-GGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred ceEccCCcEEEEEec-CcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 444545555444433 4599999999999999988 5678999999754
|
|
| >KOG2979 consensus Protein involved in DNA repair [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.12 Score=54.38 Aligned_cols=43 Identities=23% Similarity=0.439 Sum_probs=36.0
Q ss_pred ceeccCccccccCcEE-cCCcccccHHhHHHHHHhC-CCCCCCCC
Q 001349 163 DFVCPITTHIFDDPVT-LETGQTYERRAIQEWIERG-NSSCPITR 205 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~-~~cGhtfc~~ci~~~~~~~-~~~CP~c~ 205 (1094)
++.|||....+..||+ ..|||.|.|..|...+... ...||+-+
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~g 220 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLG 220 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeeccccc
Confidence 6899999999999998 5999999999999988652 22499743
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.21 E-value=6.7 Score=47.38 Aligned_cols=103 Identities=11% Similarity=0.009 Sum_probs=51.8
Q ss_pred cCcEEEEeeCCC-----CeEEEeCCcceee----cccCCCcEEEEEEeCCEEEEEECC--CeEEEEecCCCcceeEEEec
Q 001349 784 EMVKVLSNGHDS-----SADFWNHRELVHV----DSSENGKVLSIACFRDKIFSGHSD--GTIKVWTGRGSILHLIQQIR 852 (1094)
Q Consensus 784 d~~~l~s~s~dg-----~I~vWd~~~~~~~----~~~h~~~V~~l~fspd~LaSgs~D--g~I~vWd~~t~~~~~~~~l~ 852 (1094)
++..++.||.++ ++..||....... ..........+...+...+.|+.+ .++..||..++.+..+..+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 345567777643 3455665522111 111111222333333466666654 46888998877555544443
Q ss_pred ccCCCeEEEEEecCCCEEEEEeCCC---cEEEEECCCCc
Q 001349 853 EHTKAVTGLAILQSGEMLYSGSLDK---TARVWSIGNEE 888 (1094)
Q Consensus 853 ~H~~~V~sv~fspdg~~LaSgs~Dg---tI~vWdi~~~~ 888 (1094)
...... +++ .-+|+..+.||.++ ++..||..+++
T Consensus 351 ~~r~~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~ 387 (480)
T PHA02790 351 KPRCNP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHDQ 387 (480)
T ss_pred CCCccc-EEE-EECCEEEEecCcCCCCccEEEEeCCCCE
Confidence 211111 222 23677777777653 35667776654
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.37 Score=37.63 Aligned_cols=31 Identities=26% Similarity=0.634 Sum_probs=28.0
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1064 SGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1064 ~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
...|..++|+|..++|+.|+.||.|.++.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4479999999999999999999999999864
|
|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.99 Score=58.05 Aligned_cols=176 Identities=16% Similarity=0.100 Sum_probs=118.3
Q ss_pred hHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcChHH----HHHHHHhcCCC-hHHHH----HhhhhHHHHH
Q 001349 328 PRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGLLE----AVVLIDLLRPS-TRTLI----EMDMMESLMT 398 (1094)
Q Consensus 328 ~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g~~~----Aa~~l~~L~~~-~~~~~----~~~~~~~Ll~ 398 (1094)
..+.+++...|.||...+.+|+..+...++...++|+-|++...+ -|.+|.+|+=. |.|++ .++-+-+|+.
T Consensus 365 ~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~ 444 (2195)
T KOG2122|consen 365 NALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAA 444 (2195)
T ss_pred HHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHH
Confidence 466899999999999999999999999999999999999998543 45588899543 23443 3444444444
Q ss_pred H-HHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhcc-chhHHHHHHhhh----cccHHHHHHHHHHH---
Q 001349 399 V-IKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVS-SKVFESVISSLE----AEWAEERIAAVGIL--- 469 (1094)
Q Consensus 399 ~-l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~----~~~~~~~~~~~~~l--- 469 (1094)
. ++..+|-.++. +|..|-.- .+...+|.+.|-. -|++.+||++|- ++++.-=++|.+||
T Consensus 445 ~al~~~kEsTLKa----------vLSALWNL--SAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNV 512 (2195)
T KOG2122|consen 445 CALRNKKESTLKA----------VLSALWNL--SAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNV 512 (2195)
T ss_pred HHHHhcccchHHH----------HHHHHhhh--hhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHH
Confidence 3 44444433332 23333211 2444566665543 577889998885 33455556666666
Q ss_pred HHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHH
Q 001349 470 LRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELV 515 (1094)
Q Consensus 470 ~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~ 515 (1094)
...++.+..||..+.++..++-|++.|.+.+=-.=.++.-.|-+|.
T Consensus 513 SS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLS 558 (2195)
T KOG2122|consen 513 SSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLS 558 (2195)
T ss_pred HhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhh
Confidence 3567778899999999999999999888765444334455555553
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1094 | ||||
| 1t1h_A | 78 | Nmr Solution Structure Of The U Box Domain From Atp | 5e-13 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 6e-08 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 8e-08 | ||
| 1gxr_A | 337 | Wd40 Region Of Human Groucho/tle1 Length = 337 | 6e-06 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 6e-05 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 7e-04 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 8e-04 |
| >pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14, An Armadillo Repeat Containing Protein From Arabidopsis Thaliana Length = 78 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1094 | |||
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.98 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.98 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.98 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.98 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.98 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.97 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.97 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.97 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.97 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.97 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.97 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.97 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.97 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.97 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.97 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.97 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.97 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.97 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.97 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.97 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.97 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.97 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.97 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.97 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.97 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.97 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.97 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.97 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.97 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.97 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.96 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.96 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.96 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.96 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.96 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.96 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.96 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.96 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.96 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.96 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.96 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.96 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.96 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.96 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.96 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.96 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.96 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.95 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.95 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.95 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.95 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.95 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.95 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.95 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.95 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.95 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.95 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.95 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.95 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.95 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.95 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.95 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.94 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.94 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.94 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.94 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.94 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.94 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.94 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.94 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.94 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.94 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.93 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.93 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.93 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.93 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.93 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.92 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.92 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.92 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.92 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.91 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.91 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.91 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.9 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.89 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.88 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.88 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.87 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.85 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.84 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.84 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.84 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.82 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.82 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.81 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.81 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.8 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.79 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.79 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.79 | |
| 1wgm_A | 98 | Ubiquitin conjugation factor E4A; ubiquitinating e | 99.77 | |
| 2kre_A | 100 | Ubiquitin conjugation factor E4 B; U-box domain, E | 99.76 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.76 | |
| 2kr4_A | 85 | Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri | 99.76 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.75 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.74 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.74 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.74 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.73 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.73 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.73 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.72 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.72 | |
| 1t1h_A | 78 | Gspef-atpub14, armadillo repeat containing protein | 99.71 | |
| 2f42_A | 179 | STIP1 homology and U-box containing protein 1; cha | 99.71 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.71 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.69 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.69 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.67 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.67 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.67 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.66 | |
| 2yu4_A | 94 | E3 SUMO-protein ligase NSE2; SP-ring domain, struc | 99.66 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.65 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.65 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.64 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.61 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.6 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.59 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.58 | |
| 3ztg_A | 92 | E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR | 99.58 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.58 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.57 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.55 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.55 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.53 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.53 | |
| 3fl2_A | 124 | E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA | 99.49 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.49 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.47 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.47 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.46 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.45 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.45 | |
| 3htk_C | 267 | E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- | 99.45 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.45 | |
| 1z6u_A | 150 | NP95-like ring finger protein isoform B; structura | 99.44 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.44 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.44 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.44 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.44 | |
| 2y43_A | 99 | E3 ubiquitin-protein ligase RAD18; DNA repair, met | 99.41 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.41 | |
| 3lrq_A | 100 | E3 ubiquitin-protein ligase TRIM37; structural gen | 99.41 | |
| 2ecw_A | 85 | Tripartite motif-containing protein 30; metal bind | 99.38 | |
| 1jm7_B | 117 | BARD1, BRCA1-associated ring domain protein 1; rin | 99.37 | |
| 2egp_A | 79 | Tripartite motif-containing protein 34; ZF-C3HC4 d | 99.37 | |
| 2yur_A | 74 | Retinoblastoma-binding protein 6; P53-associated c | 99.37 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.37 | |
| 3l11_A | 115 | E3 ubiquitin-protein ligase RNF168; E3 ligase, rin | 99.36 | |
| 2ecv_A | 85 | Tripartite motif-containing protein 5; metal bindi | 99.35 | |
| 2ckl_A | 108 | Polycomb group ring finger protein 4; BMI1, RING1B | 99.35 | |
| 2ecy_A | 66 | TNF receptor-associated factor 3; metal binding pr | 99.35 | |
| 3hct_A | 118 | TNF receptor-associated factor 6; cross-brace, bet | 99.35 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.35 | |
| 2csy_A | 81 | Zinc finger protein 183-like 1; ring finger protei | 99.34 | |
| 2bay_A | 61 | PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l | 99.33 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.32 | |
| 2djb_A | 72 | Polycomb group ring finger protein 6; PCGF6, ring | 99.32 | |
| 2ckl_B | 165 | Ubiquitin ligase protein RING2; BMI1, RING1B, poly | 99.3 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.3 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.3 | |
| 2ysl_A | 73 | Tripartite motif-containing protein 31; ring-type | 99.3 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.29 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.28 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.28 | |
| 4ayc_A | 138 | E3 ubiquitin-protein ligase RNF8; DNA damage, K63 | 99.28 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.28 | |
| 2ysj_A | 63 | Tripartite motif-containing protein 31; ring-type | 99.28 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 99.27 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.27 | |
| 1jm7_A | 112 | BRCA1, breast cancer type 1 susceptibility protein | 99.27 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 99.27 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.26 | |
| 1rmd_A | 116 | RAG1; V(D)J recombination, antibody, MAD, ring fin | 99.26 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.24 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.24 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.24 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.23 | |
| 1g25_A | 65 | CDK-activating kinase assembly factor MAT1; ring f | 99.23 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.22 | |
| 3knv_A | 141 | TNF receptor-associated factor 2; cross-brace, alt | 99.22 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.22 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.22 | |
| 3hcs_A | 170 | TNF receptor-associated factor 6; cross-brace, bet | 99.19 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 99.19 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.18 | |
| 2ct2_A | 88 | Tripartite motif protein 32; zinc-finger protein H | 99.18 | |
| 3ng2_A | 71 | RNF4, snurf, ring finger protein 4; ring domain, E | 99.17 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.17 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.17 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.16 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 99.16 | |
| 2d8t_A | 71 | Dactylidin, ring finger protein 146; RNF146, ring | 99.15 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.15 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 99.15 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.15 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.14 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.14 | |
| 2ecj_A | 58 | Tripartite motif-containing protein 39; TRIM39, ri | 99.13 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.13 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.13 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.13 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.11 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.11 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.1 | |
| 2ea6_A | 69 | Ring finger protein 4; RNF4, RES4-26, ring domain, | 99.1 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.09 | |
| 1e4u_A | 78 | Transcriptional repressor NOT4; gene regulation, t | 99.09 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.08 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.08 | |
| 2xeu_A | 64 | Ring finger protein 4; transcription, zinc-finger, | 99.08 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 99.07 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.07 | |
| 3m62_A | 968 | Ubiquitin conjugation factor E4; armadillo-like re | 99.06 | |
| 2ect_A | 78 | Ring finger protein 126; metal binding protein, st | 99.05 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.03 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.03 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.0 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.0 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.99 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.98 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.98 | |
| 1bor_A | 56 | Transcription factor PML; proto-oncogene, nuclear | 98.98 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.97 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 98.97 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 98.97 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 98.96 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.96 | |
| 1chc_A | 68 | Equine herpes virus-1 ring domain; viral protein; | 98.95 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.95 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.95 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.93 | |
| 2ecm_A | 55 | Ring finger and CHY zinc finger domain- containing | 98.93 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 98.93 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 98.93 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 98.92 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 98.91 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 98.91 | |
| 2ep4_A | 74 | Ring finger protein 24; zinc binding, ubiquitin, E | 98.91 | |
| 2ecn_A | 70 | Ring finger protein 141; RNF141, ring domain, zinc | 98.91 | |
| 1iym_A | 55 | EL5; ring-H2 finger, ubiquitin ligase, DNA binding | 98.91 | |
| 2kiz_A | 69 | E3 ubiquitin-protein ligase arkadia; ring-H2 finge | 98.9 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 98.89 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 98.89 | |
| 2l0b_A | 91 | E3 ubiquitin-protein ligase praja-1; zinc finger, | 98.88 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 98.87 | |
| 1x4j_A | 75 | Ring finger protein 38; structural genomics, NPPSF | 98.87 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.86 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 98.86 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 98.86 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.85 | |
| 4ap4_A | 133 | E3 ubiquitin ligase RNF4; ligase-signalling protei | 98.84 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.84 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.82 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.81 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.81 | |
| 1v87_A | 114 | Deltex protein 2; ring-H2 domain, zinc-binding dom | 98.81 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.78 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 98.77 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.77 | |
| 4ic3_A | 74 | E3 ubiquitin-protein ligase XIAP; ring domain, zin | 98.77 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.75 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.75 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.72 | |
| 2y1n_A | 389 | E3 ubiquitin-protein ligase; ligase-transferase co | 98.71 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 98.67 | |
| 1wim_A | 94 | KIAA0161 protein; ring finger domain, UBCM4-intera | 98.67 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.66 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.65 | |
| 2ecg_A | 75 | Baculoviral IAP repeat-containing protein 4; BIRC4 | 98.64 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 98.63 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 98.63 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.62 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.61 | |
| 4ap4_A | 133 | E3 ubiquitin ligase RNF4; ligase-signalling protei | 98.61 | |
| 2ecl_A | 81 | Ring-box protein 2; RNF7, ring domian, zinc-bindin | 98.57 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 98.56 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.56 | |
| 2vje_A | 64 | E3 ubiquitin-protein ligase MDM2; proto-oncogene, | 98.54 | |
| 2vje_B | 63 | MDM4 protein; proto-oncogene, phosphorylation, alt | 98.49 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.48 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 98.46 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.43 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 98.43 | |
| 3dpl_R | 106 | Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST | 98.43 | |
| 2yho_A | 79 | E3 ubiquitin-protein ligase mylip; ligase, E2 liga | 98.4 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.39 | |
| 2ea5_A | 68 | Cell growth regulator with ring finger domain prot | 98.38 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.37 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.37 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.36 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.32 | |
| 3t6p_A | 345 | Baculoviral IAP repeat-containing protein 2; ring, | 98.31 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.29 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.29 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.25 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.25 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.25 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.24 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.24 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.22 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.18 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.15 | |
| 4a0k_B | 117 | E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi | 98.15 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.14 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.11 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.1 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.1 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.08 | |
| 2d8s_A | 80 | Cellular modulator of immune recognition; C-MIR, m | 98.07 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.05 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.95 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.94 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.94 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.92 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.88 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.87 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.84 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 97.8 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.76 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.74 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.71 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.7 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.66 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.65 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.59 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.58 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.58 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.55 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.49 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.45 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.4 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.39 | |
| 3vk6_A | 101 | E3 ubiquitin-protein ligase hakai; HYB, phosphotyr | 97.32 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.32 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.22 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.16 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.15 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.12 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.1 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 97.07 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.05 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 96.98 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 96.96 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 96.94 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 96.93 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.89 | |
| 2ct0_A | 74 | Non-SMC element 1 homolog; ring domain, structural | 96.87 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 96.85 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 96.78 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.77 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 96.63 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 96.57 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 96.55 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 96.47 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 96.47 | |
| 1vyx_A | 60 | ORF K3, K3RING; zinc-binding protein, ring domain, | 96.4 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 96.37 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 96.36 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.35 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 96.35 | |
| 3k1l_B | 381 | Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A | 96.34 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 96.27 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 96.25 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.24 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 96.2 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.19 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 96.17 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.16 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.1 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.08 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 96.05 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 96.03 | |
| 2jun_A | 101 | Midline-1; B-BOX, TRIM, ring finger, alternative s | 95.95 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 95.92 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 95.88 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 95.81 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 95.64 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 95.56 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 95.54 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 95.33 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.25 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 95.24 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 95.11 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 95.02 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 94.73 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 94.69 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 94.68 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 94.32 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 94.15 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 93.64 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 93.63 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 93.52 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 93.51 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 93.24 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 92.74 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 92.7 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 92.61 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 92.36 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 92.35 | |
| 3i2d_A | 371 | E3 SUMO-protein ligase SIZ1; signal transduction, | 91.65 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 91.39 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 91.27 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 91.11 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 91.0 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 90.52 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 90.5 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 90.42 | |
| 4fo9_A | 360 | E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom | 89.42 | |
| 1weo_A | 93 | Cellulose synthase, catalytic subunit (IRX3); stru | 88.98 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 88.88 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 88.78 | |
| 3nw0_A | 238 | Non-structural maintenance of chromosomes element | 88.63 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 88.4 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 88.18 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 87.12 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 86.56 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 86.25 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 86.17 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 85.8 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 85.02 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 84.41 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 83.17 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 81.61 |
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=356.08 Aligned_cols=276 Identities=19% Similarity=0.281 Sum_probs=243.9
Q ss_pred hhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCccee
Q 001349 772 LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHL 847 (1094)
Q Consensus 772 ~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~ 847 (1094)
|...+....+.+++.++++|+.||+|++||.. .....+.+|.+.|++++|+|+ +|++|+.||+|++||+.++ .+
T Consensus 107 h~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~--~~ 184 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF--EC 184 (410)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS--CE
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ce
Confidence 44455566788889999999999999999987 466788899999999999986 9999999999999999988 78
Q ss_pred EEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCC
Q 001349 848 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNG 927 (1094)
Q Consensus 848 ~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g 927 (1094)
+.++.+|...|++++|+|++++|++|+.|++|++||+.++... .....+...|..+. |+|+|.
T Consensus 185 ~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~-~~~~~h~~~v~~~~-------~~~~g~--------- 247 (410)
T 1vyh_C 185 IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV-KTFTGHREWVRMVR-------PNQDGT--------- 247 (410)
T ss_dssp EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE-EEEECCSSCEEEEE-------ECTTSS---------
T ss_pred eEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE-EEEeCCCccEEEEE-------ECCCCC---------
Confidence 9999999999999999999999999999999999999987522 22234556666665 666665
Q ss_pred eEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC---------------
Q 001349 928 KTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG--------------- 992 (1094)
Q Consensus 928 ~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~--------------- 992 (1094)
.+++|+.||+|++||+.++... ..+.+|...|.+++|+|+
T Consensus 248 -------------------~l~s~s~D~~v~vwd~~~~~~~------~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~ 302 (410)
T 1vyh_C 248 -------------------LIASCSNDQTVRVWVVATKECK------AELREHRHVVECISWAPESSYSSISEATGSETK 302 (410)
T ss_dssp -------------------EEEEEETTSCEEEEETTTCCEE------EEECCCSSCEEEEEECCSCGGGGGGGCCSCC--
T ss_pred -------------------EEEEEcCCCeEEEEECCCCcee------eEecCCCceEEEEEEcCcccccchhhhcccccc
Confidence 3889999999999999999877 466788999999999986
Q ss_pred -----ccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCC
Q 001349 993 -----LVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTS 1064 (1094)
Q Consensus 993 -----~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~ 1064 (1094)
+.++++++.|+ +|++||++++.++..+. |...|.+++|+|+ ++++|+.||+|++||+.+++++..+ .+|.
T Consensus 303 ~~~~~g~~l~sgs~D~-~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~-~~h~ 380 (410)
T 1vyh_C 303 KSGKPGPFLLSGSRDK-TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL-NAHE 380 (410)
T ss_dssp -----CCEEEEEETTS-EEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE-ECCS
T ss_pred ccCCCCCEEEEEeCCC-eEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE-cCCC
Confidence 56899999997 99999999999999887 7788999999998 8999999999999999999999999 5899
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1065 GKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1065 ~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
..|++++|+|++++|++|+.||+|++|++
T Consensus 381 ~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 381 HFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 99999999999999999999999999996
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-36 Score=341.18 Aligned_cols=277 Identities=19% Similarity=0.266 Sum_probs=241.2
Q ss_pred hhhccccccccc----cCcEEEEeeCCCCeEEEeCCc----ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecC
Q 001349 772 LRELRKYSPLAF----EMVKVLSNGHDSSADFWNHRE----LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR 841 (1094)
Q Consensus 772 ~~~~~~~~~~~~----d~~~l~s~s~dg~I~vWd~~~----~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~ 841 (1094)
|...+....+.+ ++.+|++|+.|++|++|++.. ....+.+|...|.+++|+++ ++++|+.||+|++||+.
T Consensus 31 H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~ 110 (321)
T 3ow8_A 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110 (321)
T ss_dssp SSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred CCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 334444455544 466899999999999999862 33467899999999999996 99999999999999999
Q ss_pred CCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEE
Q 001349 842 GSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIK 921 (1094)
Q Consensus 842 t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~ 921 (1094)
++ +.+..+..|...+++++|+|++++|++|+.||+|++||+.+++.. .....+...+.+++ |+|+|+.
T Consensus 111 ~~--~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~-~~~~~~~~~v~~~~-------~spdg~~-- 178 (321)
T 3ow8_A 111 NG--KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE-YSLDTRGKFILSIA-------YSPDGKY-- 178 (321)
T ss_dssp TT--EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEE-EEEECSSSCEEEEE-------ECTTSSE--
T ss_pred CC--CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCcee-EEecCCCceEEEEE-------ECCCCCE--
Confidence 99 788899999999999999999999999999999999999987632 22333455666666 7777764
Q ss_pred EEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEEC
Q 001349 922 VHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSL 1001 (1094)
Q Consensus 922 ~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~ 1001 (1094)
+++|+.||.|++||+++++.+ ..+.+|..+|++++|+|++.++++++.
T Consensus 179 --------------------------lasg~~dg~i~iwd~~~~~~~------~~~~~h~~~v~~l~~spd~~~l~s~s~ 226 (321)
T 3ow8_A 179 --------------------------LASGAIDGIINIFDIATGKLL------HTLEGHAMPIRSLTFSPDSQLLVTASD 226 (321)
T ss_dssp --------------------------EEEEETTSCEEEEETTTTEEE------EEECCCSSCCCEEEECTTSCEEEEECT
T ss_pred --------------------------EEEEcCCCeEEEEECCCCcEE------EEEcccCCceeEEEEcCCCCEEEEEcC
Confidence 888999999999999999877 566789999999999999999999999
Q ss_pred CCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCE
Q 001349 1002 DGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEF 1078 (1094)
Q Consensus 1002 Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~ 1078 (1094)
|+ +|++||++++.....+. |...|.+++|+|+ ++++|+.||+|++||+.+++++..+ .+|.+.|++++|+|+|++
T Consensus 227 dg-~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~h~~~v~~v~~s~~g~~ 304 (321)
T 3ow8_A 227 DG-YIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF-FDHQDQVWGVKYNGNGSK 304 (321)
T ss_dssp TS-CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSE
T ss_pred CC-eEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE-cCCCCcEEEEEECCCCCE
Confidence 96 99999999999988888 7788999999998 8999999999999999999999999 589999999999999999
Q ss_pred EEEEeCCCcEEEEeCC
Q 001349 1079 LVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1079 L~sgs~DG~I~iWdls 1094 (1094)
|++++.||+|++||+.
T Consensus 305 l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 305 IVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEEETTCCEEEEECC
T ss_pred EEEEeCCCeEEEEeCC
Confidence 9999999999999974
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-35 Score=334.17 Aligned_cols=276 Identities=16% Similarity=0.247 Sum_probs=240.7
Q ss_pred hhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCc--c
Q 001349 772 LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI--L 845 (1094)
Q Consensus 772 ~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~--~ 845 (1094)
|...+....+.+++.++++++.||+|++||.. .....+..|...|.+++|+|+ +|++|+.||+|++||+.++. .
T Consensus 54 H~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~ 133 (340)
T 1got_B 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV 133 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSC
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcc
Confidence 44445566778899999999999999999986 456677889999999999996 99999999999999998652 2
Q ss_pred eeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEe
Q 001349 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR 925 (1094)
Q Consensus 846 ~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~ 925 (1094)
.....+.+|.+.|.++.|++++. +++++.||+|++||+.+++.. .....|...|.++. |+|++..
T Consensus 134 ~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~-~~~~~h~~~v~~~~-------~~~~~~~------ 198 (340)
T 1got_B 134 RVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQT-TTFTGHTGDVMSLS-------LAPDTRL------ 198 (340)
T ss_dssp EEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEE-EEECCCSSCEEEEE-------ECTTSSE------
T ss_pred eeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEE-EEEcCCCCceEEEE-------ECCCCCE------
Confidence 46677889999999999998765 899999999999999997522 22334566777776 7777663
Q ss_pred CCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCE
Q 001349 926 NGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAA 1005 (1094)
Q Consensus 926 ~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~ 1005 (1094)
+++|+.||.|++||++++... ..+.+|...|++++|+|++.++++++.|| +
T Consensus 199 ----------------------l~sg~~d~~v~~wd~~~~~~~------~~~~~h~~~v~~v~~~p~~~~l~s~s~d~-~ 249 (340)
T 1got_B 199 ----------------------FVSGACDASAKLWDVREGMCR------QTFTGHESDINAICFFPNGNAFATGSDDA-T 249 (340)
T ss_dssp ----------------------EEEEETTSCEEEEETTTCSEE------EEECCCSSCEEEEEECTTSSEEEEEETTS-C
T ss_pred ----------------------EEEEeCCCcEEEEECCCCeeE------EEEcCCcCCEEEEEEcCCCCEEEEEcCCC-c
Confidence 889999999999999999877 56778999999999999999999999997 9
Q ss_pred EEEEECCCCeEEEEecCC---CCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEE
Q 001349 1006 VKMWSTSNYNMVGSLPTL---SEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLV 1080 (1094)
Q Consensus 1006 I~iwd~~~~~~~~~~~~~---~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~ 1080 (1094)
|++||+++++.+..+.+. ..|.+++|+|+ ++++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|||.+|+
T Consensus 250 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~s~dg~~l~ 328 (340)
T 1got_B 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL-AGHDNRVSCLGVTDDGMAVA 328 (340)
T ss_dssp EEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSSCEE
T ss_pred EEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEe-ecCCCcEEEEEEcCCCCEEE
Confidence 999999999988887754 47999999998 8999999999999999999999998 59999999999999999999
Q ss_pred EEeCCCcEEEEe
Q 001349 1081 IGTSDGRIQAWG 1092 (1094)
Q Consensus 1081 sgs~DG~I~iWd 1092 (1094)
+|+.||+|++||
T Consensus 329 s~s~D~~i~iWd 340 (340)
T 1got_B 329 TGSWDSFLKIWN 340 (340)
T ss_dssp EEETTSCEEEEC
T ss_pred EEcCCccEEecC
Confidence 999999999997
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-35 Score=337.77 Aligned_cols=277 Identities=14% Similarity=0.128 Sum_probs=222.7
Q ss_pred ccccccccccCcEEEEeeCCCCeEEEeCC-------------cceeecccCCCcEEEEEEeCC-EEEEEECCCeEEEEec
Q 001349 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHR-------------ELVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTG 840 (1094)
Q Consensus 775 ~~~~~~~~~d~~~l~s~s~dg~I~vWd~~-------------~~~~~~~~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~ 840 (1094)
.+....|++||..+++++ |+++++||.. ........|...|.+++|+|+ .|++|+.||+|+|||+
T Consensus 32 ~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~ 110 (344)
T 4gqb_B 32 QLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWEL 110 (344)
T ss_dssp EEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEEEEEE
T ss_pred CEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEEEEec
Confidence 345667888999998877 7888888742 111222345778999999997 9999999999999999
Q ss_pred CCCcceeE--EEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCC
Q 001349 841 RGSILHLI--QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGA 918 (1094)
Q Consensus 841 ~t~~~~~~--~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~ 918 (1094)
.+++.... ....+|.+.|++++|+|+|++|++|+.||+|++||+.+++. ......|...|.++. |+|++.
T Consensus 111 ~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~-~~~~~~h~~~V~~~~-------~~~~~~ 182 (344)
T 4gqb_B 111 DENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVV-LSSYRAHAAQVTCVA-------ASPHKD 182 (344)
T ss_dssp CTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEE-------ECSSCT
T ss_pred cCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE-EEEEcCcCCceEEEE-------ecCCCC
Confidence 98743222 33558999999999999999999999999999999999852 222334667777776 777665
Q ss_pred eEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeC-CccEEE
Q 001349 919 GIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTA 997 (1094)
Q Consensus 919 ~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~-~~~~la 997 (1094)
. .+++|+.||+|++||+++++....+. ...|...+.+++|+| ++.+++
T Consensus 183 ~---------------------------~l~s~s~D~~v~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~l~ 231 (344)
T 4gqb_B 183 S---------------------------VFLSCSEDNRILLWDTRCPKPASQIG----CSAPGYLPTSLAWHPQQSEVFV 231 (344)
T ss_dssp T---------------------------EEEEEETTSCEEEEETTSSSCEEECC--------CCCEEEEEECSSCTTEEE
T ss_pred C---------------------------ceeeeccccccccccccccceeeeee----cceeeccceeeeecCCCCcceE
Confidence 3 37899999999999999998774322 234566799999997 567889
Q ss_pred EEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEc
Q 001349 998 STSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD 1073 (1094)
Q Consensus 998 s~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~S 1073 (1094)
+++.|| +|++||+++++++.++. |...|++++|+|+ ++++|+.||+|+|||+.+++++. + .+|.+.|++++|+
T Consensus 232 sg~~dg-~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~-~~H~~~V~~v~~s 308 (344)
T 4gqb_B 232 FGDENG-TVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-S-QAHRDFVRDATWS 308 (344)
T ss_dssp EEETTS-EEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-E-CCCSSCEEEEEEC
T ss_pred EeccCC-cEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-E-cCCCCCEEEEEEe
Confidence 999886 99999999999999888 7889999999987 68999999999999999998654 4 4899999999999
Q ss_pred CCCC-EEEEEeCCCcEEEEeCC
Q 001349 1074 DNEE-FLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1074 pdg~-~L~sgs~DG~I~iWdls 1094 (1094)
|+++ +|++|+.||+|++|++.
T Consensus 309 p~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 309 PLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp SSSTTEEEEEETTSCEEEEECC
T ss_pred CCCCeEEEEEcCCCeEEEEECC
Confidence 9986 57799999999999973
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-35 Score=360.36 Aligned_cols=306 Identities=16% Similarity=0.241 Sum_probs=250.5
Q ss_pred hhhccccccccccCc-EEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcce
Q 001349 772 LRELRKYSPLAFEMV-KVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILH 846 (1094)
Q Consensus 772 ~~~~~~~~~~~~d~~-~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~ 846 (1094)
|...+....|.+++. .+++++.|++|++||.. .....+.+|.+.|++++|+|+ +|++|+.||+|++||+.++ .
T Consensus 146 h~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g--~ 223 (611)
T 1nr0_A 146 QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG--T 223 (611)
T ss_dssp CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--C
T ss_pred CCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCC--c
Confidence 444455666777776 69999999999999987 456678899999999999997 9999999999999999988 6
Q ss_pred eEEEec-------ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEE--------------------------
Q 001349 847 LIQQIR-------EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQ-------------------------- 893 (1094)
Q Consensus 847 ~~~~l~-------~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~-------------------------- 893 (1094)
++..+. +|.+.|++++|+|+|++|+|++.|++|++||+.+++.....
T Consensus 224 ~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d 303 (611)
T 1nr0_A 224 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN 303 (611)
T ss_dssp EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETT
T ss_pred EeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCC
Confidence 777774 79999999999999999999999999999999987522111
Q ss_pred ----------------ecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCC---------------------
Q 001349 894 ----------------VHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSK--------------------- 936 (1094)
Q Consensus 894 ----------------~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~--------------------- 936 (1094)
...|...|.+++ |+|+|+.+++++.|+.+++|+...
T Consensus 304 ~~i~~~~~~~~~~~~~~~gh~~~v~~l~-------~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s 376 (611)
T 1nr0_A 304 GFINFVNPELGSIDQVRYGHNKAITALS-------SSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 376 (611)
T ss_dssp CCEEEEETTTTEEEEEECCCSSCEEEEE-------ECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEEC
T ss_pred CcEEEEeCCCCCcceEEcCCCCCEEEEE-------EeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEEC
Confidence 113445555555 899999999999999998887321
Q ss_pred -------------------------------------------------------------------------CceEEEE
Q 001349 937 -------------------------------------------------------------------------YPKCLAL 943 (1094)
Q Consensus 937 -------------------------------------------------------------------------~v~~l~~ 943 (1094)
.+.+++|
T Consensus 377 ~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~ 456 (611)
T 1nr0_A 377 SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVAL 456 (611)
T ss_dssp TTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEE
T ss_pred CCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEE
Confidence 1235556
Q ss_pred eC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCC-CeEEEE-
Q 001349 944 VQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN-YNMVGS- 1019 (1094)
Q Consensus 944 s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~-~~~~~~- 1019 (1094)
++ ..+++|+.|++|++||+.++..... .. .+|...|++++|+|++.++++++.|+ +|++||+.+ ++....
T Consensus 457 spdg~~lasgs~D~~v~lwd~~~~~~~~~----~~-~~h~~~v~~v~fspdg~~las~s~d~-~v~~w~~~~~~~~~~~~ 530 (611)
T 1nr0_A 457 SNDKQFVAVGGQDSKVHVYKLSGASVSEV----KT-IVHPAEITSVAFSNNGAFLVATDQSR-KVIPYSVANNFELAHTN 530 (611)
T ss_dssp CTTSCEEEEEETTSEEEEEEEETTEEEEE----EE-EECSSCEEEEEECTTSSEEEEEETTS-CEEEEEGGGTTEESCCC
T ss_pred eCCCCEEEEeCCCCeEEEEEccCCceeee----ec-cCCCCceEEEEECCCCCEEEEEcCCC-CEEEEEcCCCCceeeee
Confidence 54 3588888888899998876643211 22 57889999999999999999999996 999999987 666544
Q ss_pred -ec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCc-EE-EEecccC-CcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1020 -LP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI-RI-ETLQTGT-SGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1020 -~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~-~~-~~l~~~h-~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
+. |...|.+++|+|| +|++|+.|++|++||+.++. .+ ..+ .+| .+.|++++|+||++ |++++.||+|++|+
T Consensus 531 ~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~-~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~ 608 (611)
T 1nr0_A 531 SWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK-GAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWN 608 (611)
T ss_dssp CCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEET-TSSTTSCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred eeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhh-ccCcccCeeEEEEcCCCE-EEEecCCCCEEEEe
Confidence 33 7889999999999 89999999999999998875 33 444 688 88999999999998 99999999999999
Q ss_pred CC
Q 001349 1093 LS 1094 (1094)
Q Consensus 1093 ls 1094 (1094)
+.
T Consensus 609 ~~ 610 (611)
T 1nr0_A 609 VP 610 (611)
T ss_dssp CC
T ss_pred cc
Confidence 74
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=356.89 Aligned_cols=310 Identities=17% Similarity=0.200 Sum_probs=257.9
Q ss_pred ccccccccccCcEEEEeeCC----CCeEEEeCCcceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCccee
Q 001349 775 LRKYSPLAFEMVKVLSNGHD----SSADFWNHRELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHL 847 (1094)
Q Consensus 775 ~~~~~~~~~d~~~l~s~s~d----g~I~vWd~~~~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~ 847 (1094)
.+....|++++.++++++.+ +.|++||.......+.+|.+.|++++|+|+ .|++|+.|++|++||..++ ++
T Consensus 105 ~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~--~~ 182 (611)
T 1nr0_A 105 PVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF--KF 182 (611)
T ss_dssp CEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB--EE
T ss_pred ceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC--eE
Confidence 44567788899999998875 478889877777788999999999999996 6999999999999999887 78
Q ss_pred EEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEec------ccCccceeeeecCceEEEeeCCCeEE
Q 001349 848 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVH------DIKDQIQNLAVSNSILCFIPQGAGIK 921 (1094)
Q Consensus 848 ~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~------~~~~~V~~v~~~~~~~~fspdg~~l~ 921 (1094)
..++.+|.+.|++++|+|||++|++|+.|++|++||+.+++....... .|...|.+++ |+|+|+.++
T Consensus 183 ~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~-------~spdg~~l~ 255 (611)
T 1nr0_A 183 KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT-------WSPDGTKIA 255 (611)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEE-------ECTTSSEEE
T ss_pred eeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEE-------ECCCCCEEE
Confidence 889999999999999999999999999999999999998863322211 5778888888 999999999
Q ss_pred EEEeCCeEEEEcCC-------------------------------------------------------CCceEEEEeC-
Q 001349 922 VHLRNGKTKLLNSS-------------------------------------------------------KYPKCLALVQ- 945 (1094)
Q Consensus 922 ~~~~~g~i~l~~~~-------------------------------------------------------~~v~~l~~s~- 945 (1094)
+++.|+++++|+.. ..|.+++|++
T Consensus 256 s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spd 335 (611)
T 1nr0_A 256 SASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSAD 335 (611)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred EEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCC
Confidence 99999999999742 2467788875
Q ss_pred -CEEEEEEcCCeEEEEECCCCceeEEecc-c-------------------------------------------------
Q 001349 946 -GKVYCGCQDGAIQEIDLATGTFATIQTG-H------------------------------------------------- 974 (1094)
Q Consensus 946 -~~l~sgs~Dg~I~iwDl~~~~~~~~~~~-~------------------------------------------------- 974 (1094)
..+++|+.|++|++||+.++.....+.. +
T Consensus 336 g~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~ 415 (611)
T 1nr0_A 336 GKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPL 415 (611)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEE
T ss_pred CCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCc
Confidence 4699999999999999987765332100 0
Q ss_pred --------------------------eeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeE--EEEecCCCCE
Q 001349 975 --------------------------RKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNM--VGSLPTLSEV 1026 (1094)
Q Consensus 975 --------------------------~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~--~~~~~~~~~v 1026 (1094)
.....|...+.+++|+|++.++++++.|+ +|++||+.++.. .....|...|
T Consensus 416 ~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~-~v~lwd~~~~~~~~~~~~~h~~~v 494 (611)
T 1nr0_A 416 GLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDS-KVHVYKLSGASVSEVKTIVHPAEI 494 (611)
T ss_dssp EEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTS-EEEEEEEETTEEEEEEEEECSSCE
T ss_pred EEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCC-eEEEEEccCCceeeeeccCCCCce
Confidence 00001345678999999999999999997 999999987654 3444588999
Q ss_pred EEEEEeCC--EEEEEEcCCeEEEEECCC-CcEEEE-ecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1027 RAMVVSSE--LVYLGCKGGTVEIWDQKR-QIRIET-LQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1027 ~~l~~spd--~l~sgs~dg~I~vwd~~t-~~~~~~-l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
++++|+|| ++++++.|++|++||+.+ ++.... ...+|.+.|++++|+|||++|++|+.||+|++||+.
T Consensus 495 ~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~ 566 (611)
T 1nr0_A 495 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN 566 (611)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECC
Confidence 99999999 899999999999999987 655544 223599999999999999999999999999999973
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-35 Score=336.76 Aligned_cols=282 Identities=15% Similarity=0.133 Sum_probs=228.7
Q ss_pred HhhhccccccccccCcEEEEeeC------CCCeEEEeCCc------ceeecccCCCcEEEEEEeCC-EEEEEECCCeEEE
Q 001349 771 GLRELRKYSPLAFEMVKVLSNGH------DSSADFWNHRE------LVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKV 837 (1094)
Q Consensus 771 ~~~~~~~~~~~~~d~~~l~s~s~------dg~I~vWd~~~------~~~~~~~h~~~V~~l~fspd-~LaSgs~Dg~I~v 837 (1094)
.|...+....|++||.+|++++. |+.|++|+... ......+|.+.|++++|+|+ .+++++.||+|+|
T Consensus 40 ~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~l 119 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVEL 119 (357)
T ss_dssp CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEE
T ss_pred cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEE
Confidence 45566778889999999999997 67788888752 23344578999999999997 8889999999999
Q ss_pred EecCCCcceeE--EEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEee
Q 001349 838 WTGRGSILHLI--QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP 915 (1094)
Q Consensus 838 Wd~~t~~~~~~--~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fsp 915 (1094)
||+.++..... ....+|.+.|++++|+|+|++|++|+.||+|++||+.+++.. .....+...|.+++ |+|
T Consensus 120 Wd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~-~~~~~h~~~v~~v~-------~s~ 191 (357)
T 4g56_B 120 WEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVL-KSYNAHSSEVNCVA-------ACP 191 (357)
T ss_dssp C--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEE-EEECCCSSCEEEEE-------ECT
T ss_pred eeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEE-EEEcCCCCCEEEEE-------Ecc
Confidence 99988732222 334589999999999999999999999999999999997522 22234566677766 666
Q ss_pred CCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC-cc
Q 001349 916 QGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG-LV 994 (1094)
Q Consensus 916 dg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~-~~ 994 (1094)
++.. .+++++.||.|++||+++++.... .....|...+++++|+|+ +.
T Consensus 192 ~~~~---------------------------~~~s~~~dg~v~~wd~~~~~~~~~----~~~~~~~~~v~~v~~sp~~~~ 240 (357)
T 4g56_B 192 GKDT---------------------------IFLSCGEDGRILLWDTRKPKPATR----IDFCASDTIPTSVTWHPEKDD 240 (357)
T ss_dssp TCSS---------------------------CEEEEETTSCEEECCTTSSSCBCB----CCCTTCCSCEEEEEECTTSTT
T ss_pred CCCc---------------------------eeeeeccCCceEEEECCCCceeee----eeeccccccccchhhhhcccc
Confidence 6542 378899999999999999886632 233456788999999986 56
Q ss_pred EEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEE
Q 001349 995 YTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCM 1070 (1094)
Q Consensus 995 ~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l 1070 (1094)
++++++.|+ .|++||+++++++..+. |...|++++|+|+ +|++|+.||+|+|||+.+++.+..+ +|.+.|+++
T Consensus 241 ~la~g~~d~-~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~--~H~~~V~~v 317 (357)
T 4g56_B 241 TFACGDETG-NVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL--SHRDFVTGV 317 (357)
T ss_dssp EEEEEESSS-CEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC--CCSSCEEEE
T ss_pred eEEEeeccc-ceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC--CCCCCEEEE
Confidence 888888886 99999999999998888 6788999999986 6899999999999999999888766 799999999
Q ss_pred EEcC-CCCEEEEEeCCCcEEEEeCC
Q 001349 1071 ALDD-NEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1071 ~~Sp-dg~~L~sgs~DG~I~iWdls 1094 (1094)
+|+| |+++|+||+.||+|++|++.
T Consensus 318 afsP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 318 AWSPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp EECSSSTTEEEEEETTSCEEEEECC
T ss_pred EEeCCCCCEEEEEcCCCeEEEEECC
Confidence 9998 89999999999999999974
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-34 Score=321.10 Aligned_cols=272 Identities=17% Similarity=0.282 Sum_probs=237.0
Q ss_pred eeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcc---eeEEEecccCCCeEEEEEecCCCEEEEEeCCCcE
Q 001349 806 VHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSIL---HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTA 879 (1094)
Q Consensus 806 ~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~---~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI 879 (1094)
...+.+|.+.|++++|+|+ +|+||+.||+|++||+.+... .++..+.+|...|++++|+|+|++|++|+.|++|
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v 89 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL 89 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEE
Confidence 4567899999999999973 899999999999999875321 4577899999999999999999999999999999
Q ss_pred EEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC-----------CCCceEEEEeCC--
Q 001349 880 RVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS-----------SKYPKCLALVQG-- 946 (1094)
Q Consensus 880 ~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~-----------~~~v~~l~~s~~-- 946 (1094)
++||+.+++. ......|...|.++. |+|++..+++++.|+.+++|+. ...+.++.+.+.
T Consensus 90 ~~wd~~~~~~-~~~~~~h~~~v~~~~-------~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~ 161 (319)
T 3frx_A 90 RLWDVATGET-YQRFVGHKSDVMSVD-------IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEK 161 (319)
T ss_dssp EEEETTTTEE-EEEEECCSSCEEEEE-------ECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC--
T ss_pred EEEECCCCCe-eEEEccCCCcEEEEE-------EcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCC
Confidence 9999999862 233345788899988 9999999999999999999984 356788888753
Q ss_pred ------EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEe
Q 001349 947 ------KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL 1020 (1094)
Q Consensus 947 ------~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~ 1020 (1094)
.+++|+.|+.|++||+.+++.. ..+.+|...|++++|+|++.++++++.|| +|++||+.+++.+..+
T Consensus 162 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~------~~~~~h~~~v~~~~~sp~g~~l~s~~~dg-~i~iwd~~~~~~~~~~ 234 (319)
T 3frx_A 162 ADDDSVTIISAGNDKMVKAWNLNQFQIE------ADFIGHNSNINTLTASPDGTLIASAGKDG-EIMLWNLAAKKAMYTL 234 (319)
T ss_dssp ----CCEEEEEETTSCEEEEETTTTEEE------EEECCCCSCEEEEEECTTSSEEEEEETTC-EEEEEETTTTEEEEEE
T ss_pred CCCCccEEEEEeCCCEEEEEECCcchhh------eeecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEECCCCcEEEEe
Confidence 6999999999999999988766 56778999999999999999999999997 9999999999999999
Q ss_pred cCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecc-------cCCcceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001349 1021 PTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQT-------GTSGKVQCMALDDNEEFLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1021 ~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~-------~h~~~I~~l~~Spdg~~L~sgs~DG~I~iW 1091 (1094)
.++..|.+++|+|+ ++++++ ++.+++|++..+..+..+.. .|...+.+++|+|||++|++|+.||+|++|
T Consensus 235 ~~~~~v~~~~~sp~~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vW 313 (319)
T 3frx_A 235 SAQDEVFSLAFSPNRYWLAAAT-ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313 (319)
T ss_dssp ECCSCEEEEEECSSSSEEEEEE-TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cCCCcEEEEEEcCCCCEEEEEc-CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEE
Confidence 98899999999999 566555 55699999998887776632 245679999999999999999999999999
Q ss_pred eC
Q 001349 1092 GL 1093 (1094)
Q Consensus 1092 dl 1093 (1094)
|+
T Consensus 314 d~ 315 (319)
T 3frx_A 314 QV 315 (319)
T ss_dssp EE
T ss_pred EE
Confidence 97
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=345.53 Aligned_cols=293 Identities=23% Similarity=0.387 Sum_probs=258.5
Q ss_pred ccccccccCcEEEEeeCCCCeEEEeCC-cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecc
Q 001349 777 KYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIRE 853 (1094)
Q Consensus 777 ~~~~~~~d~~~l~s~s~dg~I~vWd~~-~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~ 853 (1094)
....+.+++..+++++.|+.|++|+.. .....+.+|.+.|.+++|+|+ ++++++.||+|++||..+. .+..+.+
T Consensus 266 ~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~---~~~~~~~ 342 (577)
T 2ymu_A 266 NGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ---HLQTLTG 342 (577)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC---EEEEECC
T ss_pred EEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC---eeEEEeC
Confidence 345677889999999999999999987 556778899999999999997 9999999999999998765 5677889
Q ss_pred cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEc
Q 001349 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN 933 (1094)
Q Consensus 854 H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~ 933 (1094)
|...|++++|+|+|++|++|+.||+|++||....... ....+...|.+++ |+|+|+.+++++.++.+++|+
T Consensus 343 ~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~--~~~~~~~~v~~~~-------~s~dg~~l~~~~~d~~v~~~~ 413 (577)
T 2ymu_A 343 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ--TLTGHSSSVRGVA-------FSPDGQTIASASDDKTVKLWN 413 (577)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEE--EEECCSSCEEEEE-------ECTTSSCEEEEETTSEEEEEC
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEE--EecCCCCCeEEEE-------ECCCCCEEEEEeCCCEEEEEe
Confidence 9999999999999999999999999999997654222 2334677888887 999999999999999999997
Q ss_pred C-----------CCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEE
Q 001349 934 S-----------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS 1000 (1094)
Q Consensus 934 ~-----------~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s 1000 (1094)
. ...|.+++|++ ..+++++.|+.|++||.. ++.. ..+.+|...|++++|+|++.++++++
T Consensus 414 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~------~~~~~~~~~v~~~~~spd~~~las~~ 486 (577)
T 2ymu_A 414 RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLL------QTLTGHSSSVRGVAFSPDGQTIASAS 486 (577)
T ss_dssp TTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEE------EEEECCSSCEEEEEECTTSCEEEEEE
T ss_pred CCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEE------EEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 4 45688999986 469999999999999964 5544 56678999999999999999999999
Q ss_pred CCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCC
Q 001349 1001 LDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE 1077 (1094)
Q Consensus 1001 ~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~ 1077 (1094)
.|+ +|++||. +++++..+. |...|++++|+|| +|++++.||.|++||. +++++..+ .+|.+.|++++|+|||+
T Consensus 487 ~d~-~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~-~~h~~~v~~~~fs~dg~ 562 (577)
T 2ymu_A 487 DDK-TVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL-TGHSSSVWGVAFSPDGQ 562 (577)
T ss_dssp TTS-EEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEE-ECCSSCEEEEEECTTSS
T ss_pred CCC-EEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEE-cCCCCCEEEEEEcCCCC
Confidence 986 9999995 677788877 7889999999998 8999999999999996 67888888 59999999999999999
Q ss_pred EEEEEeCCCcEEEEe
Q 001349 1078 FLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1078 ~L~sgs~DG~I~iWd 1092 (1094)
+|+|++.||+|++||
T Consensus 563 ~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 563 TIASASSDKTVKLWN 577 (577)
T ss_dssp CEEEEETTSCEEEEC
T ss_pred EEEEEeCCCEEEEeC
Confidence 999999999999997
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-34 Score=326.84 Aligned_cols=279 Identities=17% Similarity=0.287 Sum_probs=229.6
Q ss_pred cccccccccCcEEEEeeCCCCeEEEeCCcc-----eeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeE
Q 001349 776 RKYSPLAFEMVKVLSNGHDSSADFWNHREL-----VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLI 848 (1094)
Q Consensus 776 ~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~-----~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~ 848 (1094)
+....+++++.+|++|+.|++|++||.... .....+|.+.|.+++|+|+ +|++|+.||+|++||..++...++
T Consensus 19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~ 98 (345)
T 3fm0_A 19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECV 98 (345)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEE
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEE
Confidence 345678889999999999999999998732 1234689999999999996 999999999999999988766678
Q ss_pred EEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc-eEEEE-ecccCccceeeeecCceEEEeeCCCeEEEEEeC
Q 001349 849 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE-IHCVQ-VHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRN 926 (1094)
Q Consensus 849 ~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~-~~~~~-~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~ 926 (1094)
..+.+|.+.|++++|+|+|++|++|+.|++|++||+.++. ..+.. ...+...|.++. |+|++..
T Consensus 99 ~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~-------~~p~~~~------- 164 (345)
T 3fm0_A 99 TTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVV-------WHPSQEL------- 164 (345)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEE-------ECSSSSC-------
T ss_pred EEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEE-------ECCCCCE-------
Confidence 8999999999999999999999999999999999998764 22222 234556666666 6776653
Q ss_pred CeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEE
Q 001349 927 GKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAV 1006 (1094)
Q Consensus 927 g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I 1006 (1094)
+++|+.|+.|++||..++..... ..+.+|...|++++|+|++.++++++.|+ +|
T Consensus 165 ---------------------l~s~s~d~~i~~w~~~~~~~~~~----~~~~~h~~~v~~l~~sp~g~~l~s~s~D~-~v 218 (345)
T 3fm0_A 165 ---------------------LASASYDDTVKLYREEEDDWVCC----ATLEGHESTVWSLAFDPSGQRLASCSDDR-TV 218 (345)
T ss_dssp ---------------------EEEEETTSCEEEEEEETTEEEEE----EEECCCSSCEEEEEECTTSSEEEEEETTS-CE
T ss_pred ---------------------EEEEeCCCcEEEEEecCCCEEEE----EEecCCCCceEEEEECCCCCEEEEEeCCC-eE
Confidence 88999999999999988764322 46778999999999999999999999997 99
Q ss_pred EEEECCC---------------CeEEEEec--CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCc--------EEEEe
Q 001349 1007 KMWSTSN---------------YNMVGSLP--TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI--------RIETL 1059 (1094)
Q Consensus 1007 ~iwd~~~---------------~~~~~~~~--~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~--------~~~~l 1059 (1094)
++||... ..++..+. |...|.+++|+++ .+++++.|+.|++|+...+. .....
T Consensus 219 ~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 298 (345)
T 3fm0_A 219 RIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHL 298 (345)
T ss_dssp EEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEE
T ss_pred EEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeee
Confidence 9999632 12344444 6778999999998 89999999999999986542 12223
Q ss_pred cccCCcceEEEEEcCCC-CEEEEEeCCCcEEEEeCC
Q 001349 1060 QTGTSGKVQCMALDDNE-EFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1060 ~~~h~~~I~~l~~Spdg-~~L~sgs~DG~I~iWdls 1094 (1094)
..+|.+.|++++|+|++ .+|++|+.||+|++|++.
T Consensus 299 ~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~ 334 (345)
T 3fm0_A 299 HQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ 334 (345)
T ss_dssp TTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEEC
T ss_pred cccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEec
Confidence 35899999999999998 599999999999999963
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-34 Score=319.13 Aligned_cols=278 Identities=19% Similarity=0.254 Sum_probs=234.4
Q ss_pred hhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCccee
Q 001349 772 LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHL 847 (1094)
Q Consensus 772 ~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~ 847 (1094)
|...+....|++++.++++++.||+|++||.. .....+..|..+|.+++|+|+ +|++|+.||+|++||+.++ ..
T Consensus 12 h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~--~~ 89 (304)
T 2ynn_A 12 RSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG--EK 89 (304)
T ss_dssp ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC--CE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCC--cE
Confidence 33445567788999999999999999999997 345677889999999999996 9999999999999999999 78
Q ss_pred EEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCC
Q 001349 848 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNG 927 (1094)
Q Consensus 848 ~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g 927 (1094)
+..+.+|.+.|++++|+|++++|++|+.||+|++||+.++.........|...|.+++ |+|++.
T Consensus 90 ~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~-------~~p~~~--------- 153 (304)
T 2ynn_A 90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA-------FNPKDP--------- 153 (304)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEE-------ECTTCT---------
T ss_pred EEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEE-------ECCCCC---------
Confidence 8999999999999999999999999999999999999886433233334555666665 555321
Q ss_pred eEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeC--CccEEEEEECCCCE
Q 001349 928 KTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN--GLVYTASTSLDGAA 1005 (1094)
Q Consensus 928 ~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~--~~~~las~s~Dg~~ 1005 (1094)
..+++|+.||+|++||++++..... ...+|...+..+.|++ ++.++++++.|+ +
T Consensus 154 ------------------~~l~sgs~D~~v~iwd~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~-~ 209 (304)
T 2ynn_A 154 ------------------STFASGCLDRTVKVWSLGQSTPNFT-----LTTGQERGVNYVDYYPLPDKPYMITASDDL-T 209 (304)
T ss_dssp ------------------TEEEEEETTSEEEEEETTCSSCSEE-----EECCCTTCEEEEEECCSTTCCEEEEEETTS-E
T ss_pred ------------------CEEEEEeCCCeEEEEECCCCCccce-----eccCCcCcEEEEEEEEcCCCCEEEEEcCCC-e
Confidence 2489999999999999988765532 2245667899999975 778999999997 9
Q ss_pred EEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCC--EEE
Q 001349 1006 VKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE--FLV 1080 (1094)
Q Consensus 1006 I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~--~L~ 1080 (1094)
|++||+++++++.++. |...|.+++|+|+ ++++|+.||+|++||..+++.+..+ ..|...+++++|+|++. +++
T Consensus 210 i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a 288 (304)
T 2ynn_A 210 IKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL-NVGLERSWCIATHPTGRKNYIA 288 (304)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE-CCSSSSEEEEEECTTCGGGCEE
T ss_pred EEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeec-cCCCccEEEEEECCCCCceEEE
Confidence 9999999999999988 7789999999998 8999999999999999999999999 47888999999999885 577
Q ss_pred EEeCCCcEEEEeC
Q 001349 1081 IGTSDGRIQAWGL 1093 (1094)
Q Consensus 1081 sgs~DG~I~iWdl 1093 (1094)
+|+.|| +.+|++
T Consensus 289 sg~~~g-~~~~~~ 300 (304)
T 2ynn_A 289 SGFDNG-FTVLSL 300 (304)
T ss_dssp EEETTE-EEEEEC
T ss_pred EecCCc-eEEEEe
Confidence 777665 667765
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=324.50 Aligned_cols=271 Identities=18% Similarity=0.262 Sum_probs=238.9
Q ss_pred ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 001349 805 LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVW 882 (1094)
Q Consensus 805 ~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vW 882 (1094)
....+.+|.+.|++++|+|+ +|+||+.||+|+|||..++ .....+..|...|.+++|+|+|.++++|+.|+++++|
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~--~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT--NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY 133 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCC--CcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence 34677899999999999997 9999999999999999988 6778888899999999999999999999999999999
Q ss_pred ECCCCc-----eEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC------------CCCceEEEEeC
Q 001349 883 SIGNEE-----IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS------------SKYPKCLALVQ 945 (1094)
Q Consensus 883 di~~~~-----~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~------------~~~v~~l~~s~ 945 (1094)
++.... ........|...|.++. |+|++..+++++.|+.+++|+. ...|.++.+.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~-------~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~ 206 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACS-------FTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAP 206 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEE-------ECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECC
T ss_pred EEeccccccccccceeeeccCCcEEEEE-------EeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEe
Confidence 986542 11122234567777777 9999999999999999999984 34677888864
Q ss_pred ----CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec
Q 001349 946 ----GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP 1021 (1094)
Q Consensus 946 ----~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~ 1021 (1094)
..+++|+.||.|++||+++++.. ..+.+|...|++++|+|++.++++++.|+ +|++||++++..+..+.
T Consensus 207 ~~~g~~l~sgs~Dg~v~~wd~~~~~~~------~~~~~h~~~v~~v~~~p~~~~l~s~s~D~-~v~lwd~~~~~~~~~~~ 279 (354)
T 2pbi_B 207 SETGNTFVSGGCDKKAMVWDMRSGQCV------QAFETHESDVNSVRYYPSGDAFASGSDDA-TCRLYDLRADREVAIYS 279 (354)
T ss_dssp CSSCCEEEEEETTSCEEEEETTTCCEE------EEECCCSSCEEEEEECTTSSEEEEEETTS-CEEEEETTTTEEEEEEC
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcEE------EEecCCCCCeEEEEEeCCCCEEEEEeCCC-eEEEEECCCCcEEEEEc
Confidence 47999999999999999999887 56678999999999999999999999997 99999999998877776
Q ss_pred C---CCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1022 T---LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1022 ~---~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
+ ...+.+++|+|+ ++++|+.|++|++||+.+++.+..+ .+|.+.|++++|+|||++|++|+.||+|++|+
T Consensus 280 ~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l-~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 280 KESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSIL-FGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE-CCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEE-ECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 3 347899999998 8999999999999999999999888 58999999999999999999999999999996
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=318.02 Aligned_cols=275 Identities=21% Similarity=0.315 Sum_probs=237.9
Q ss_pred ceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCc---ceeEEEecccCCCeEEEEEecCCCEEEEEeCCCc
Q 001349 805 LVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSI---LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKT 878 (1094)
Q Consensus 805 ~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~---~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~Dgt 878 (1094)
+..++.||.+.|++|+|+|+ +|+||+.||+|+|||+.+.. ..+...+.+|...|++++|+|+|++|++|+.|+.
T Consensus 30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~ 109 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT 109 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccccc
Confidence 45578999999999999984 89999999999999987653 2457788999999999999999999999999999
Q ss_pred EEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC-------------CCCceEEEEeC
Q 001349 879 ARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS-------------SKYPKCLALVQ 945 (1094)
Q Consensus 879 I~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~-------------~~~v~~l~~s~ 945 (1094)
|++|+...+..... .......+.... +++++..+++++.++.+++|+. ...+.++.+.+
T Consensus 110 i~~~~~~~~~~~~~-~~~~~~~~~~~~-------~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~ 181 (340)
T 4aow_A 110 LRLWDLTTGTTTRR-FVGHTKDVLSVA-------FSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP 181 (340)
T ss_dssp EEEEETTTTEEEEE-EECCSSCEEEEE-------ECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECS
T ss_pred ceEEeecccceeee-ecCCCCceeEEE-------EeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEcc
Confidence 99999998753332 223344444444 8899999999999999999984 34577888764
Q ss_pred ----CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec
Q 001349 946 ----GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP 1021 (1094)
Q Consensus 946 ----~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~ 1021 (1094)
..+++++.|+.|++||+.+++.. ..+.+|..+|++++|+|++.++++++.|+ .|++||+++++.+..+.
T Consensus 182 ~~~~~~~~s~~~d~~i~i~d~~~~~~~------~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg-~i~iwd~~~~~~~~~~~ 254 (340)
T 4aow_A 182 NSSNPIIVSCGWDKLVKVWNLANCKLK------TNHIGHTGYLNTVTVSPDGSLCASGGKDG-QAMLWDLNEGKHLYTLD 254 (340)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTTEEE------EEECCCSSCEEEEEECTTSSEEEEEETTC-EEEEEETTTTEEEEEEE
T ss_pred CCCCcEEEEEcCCCEEEEEECCCCcee------eEecCCCCcEEEEEECCCCCEEEEEeCCC-eEEEEEeccCceeeeec
Confidence 35789999999999999999877 56678999999999999999999999997 99999999999999999
Q ss_pred CCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEec--------ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1022 TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQ--------TGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1022 ~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~--------~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
++..+.++.|+|+ .+++++.|+.|++||+.++..+..+. .+|...|++++|+|||++|++|+.||+|+|||
T Consensus 255 ~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 255 GGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 9999999999998 78888899999999999988776653 36788999999999999999999999999999
Q ss_pred CC
Q 001349 1093 LS 1094 (1094)
Q Consensus 1093 ls 1094 (1094)
++
T Consensus 335 ~~ 336 (340)
T 4aow_A 335 VT 336 (340)
T ss_dssp EE
T ss_pred CC
Confidence 73
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-34 Score=333.76 Aligned_cols=281 Identities=17% Similarity=0.280 Sum_probs=238.4
Q ss_pred EEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEE
Q 001349 798 DFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSG 873 (1094)
Q Consensus 798 ~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSg 873 (1094)
..|+.. .+...+.+|.+.|++++|+|+ +|+||+.||+|+|||+.++ .....+..|...|.+++|+|+|++|++|
T Consensus 49 ~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~--~~~~~~~~h~~~v~~~~~s~~g~~las~ 126 (380)
T 3iz6_a 49 VSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS--QKTHAIKLHCPWVMECAFAPNGQSVACG 126 (380)
T ss_dssp CCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTT--EEEEEEECCCTTCCCCEECTTSSEEEEC
T ss_pred cccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ccceEEecCCCCEEEEEECCCCCEEEEe
Confidence 345554 345678999999999999997 9999999999999999998 7888999999999999999999999999
Q ss_pred eCCCcEEEEECCCCce------EEEEecccCccceeeeecCceEEEeeCC-CeEEEEEeCCeEEEEcC------------
Q 001349 874 SLDKTARVWSIGNEEI------HCVQVHDIKDQIQNLAVSNSILCFIPQG-AGIKVHLRNGKTKLLNS------------ 934 (1094)
Q Consensus 874 s~DgtI~vWdi~~~~~------~~~~~~~~~~~V~~v~~~~~~~~fspdg-~~l~~~~~~g~i~l~~~------------ 934 (1094)
+.|++|++||+.++.. .......|...+.++. |.|++ ..+++++.|+.+++|+.
T Consensus 127 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~-------~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~ 199 (380)
T 3iz6_a 127 GLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQ-------YVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSE 199 (380)
T ss_dssp CSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCB-------CCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCC
T ss_pred eCCCcEEEEECCCCccccCCccceeeccCCCcceEEEE-------EecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecc
Confidence 9999999999975321 0111234566677766 77764 56899999999999974
Q ss_pred -----CCCceEEEEeC---CEEEEEEcCCeEEEEECCCC-ceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCE
Q 001349 935 -----SKYPKCLALVQ---GKVYCGCQDGAIQEIDLATG-TFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAA 1005 (1094)
Q Consensus 935 -----~~~v~~l~~s~---~~l~sgs~Dg~I~iwDl~~~-~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~ 1005 (1094)
...+.++.+.+ +.+++|+.||+|++||++.. ... ..+.+|...|++++|+|++.++++++.|+ +
T Consensus 200 ~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~------~~~~~h~~~v~~v~~~p~~~~l~s~s~D~-~ 272 (380)
T 3iz6_a 200 FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAV------RTYHGHEGDINSVKFFPDGQRFGTGSDDG-T 272 (380)
T ss_dssp SSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCC------EEECCCSSCCCEEEECTTSSEEEEECSSS-C
T ss_pred cCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcce------EEECCcCCCeEEEEEecCCCeEEEEcCCC-e
Confidence 23577788753 57999999999999999844 443 56778999999999999999999999997 9
Q ss_pred EEEEECCCCeEEEEecCC--------CCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEec---ccCCcceEEEEE
Q 001349 1006 VKMWSTSNYNMVGSLPTL--------SEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQ---TGTSGKVQCMAL 1072 (1094)
Q Consensus 1006 I~iwd~~~~~~~~~~~~~--------~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~---~~h~~~I~~l~~ 1072 (1094)
|++||++++..+..+... ..+++++|+|+ ++++|+.||.|++||..+++.+..+. .+|.+.|++++|
T Consensus 273 i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~ 352 (380)
T 3iz6_a 273 CRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGL 352 (380)
T ss_dssp EEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEE
T ss_pred EEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEE
Confidence 999999999998887631 24889999998 89999999999999999998887763 479999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCC
Q 001349 1073 DDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1073 Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
+|||++|++|+.||+|++|+++
T Consensus 353 s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 353 SSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp CSSSSEEEEECTTSCEEEEECC
T ss_pred CCCCCEEEEeeCCCCEEEEecC
Confidence 9999999999999999999974
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=322.13 Aligned_cols=275 Identities=15% Similarity=0.192 Sum_probs=222.8
Q ss_pred cCcEEEEeeCCCCeEEEeCCc---------ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEec
Q 001349 784 EMVKVLSNGHDSSADFWNHRE---------LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIR 852 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~~---------~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~ 852 (1094)
++.+|++|+.|++|++||... ....+.+|.+.|++++|+|+ ++++|+.||+|++||+.++ ..+..+.
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~--~~~~~~~ 115 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG--TTYKRFV 115 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSS--CEEEEEE
T ss_pred CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC--cEEEEEc
Confidence 788999999999999999852 34567899999999999996 9999999999999999998 7888999
Q ss_pred ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEE-ecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEE
Q 001349 853 EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQ-VHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL 931 (1094)
Q Consensus 853 ~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~-~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l 931 (1094)
+|.+.|++++|+|++++|++|+.|++|++||+......... ...+...|.++. |+|++....
T Consensus 116 ~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~~~---------- 178 (343)
T 2xzm_R 116 GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVR-------YSPIMKSAN---------- 178 (343)
T ss_dssp CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEE-------ECCCCCSCS----------
T ss_pred CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeee-------ecccccccc----------
Confidence 99999999999999999999999999999999854211111 114556677776 666653100
Q ss_pred EcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEEC
Q 001349 932 LNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWST 1011 (1094)
Q Consensus 932 ~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~ 1011 (1094)
.+......+++|+.||.|++||. ++... ..+.+|...|++++|+|++.++++++.|+ .|++||+
T Consensus 179 --------~~~~~~~~l~s~~~d~~i~iwd~-~~~~~------~~~~~h~~~v~~~~~s~~g~~l~sgs~dg-~v~iwd~ 242 (343)
T 2xzm_R 179 --------KVQPFAPYFASVGWDGRLKVWNT-NFQIR------YTFKAHESNVNHLSISPNGKYIATGGKDK-KLLIWDI 242 (343)
T ss_dssp --------CCCSSCCEEEEEETTSEEEEEET-TTEEE------EEEECCSSCEEEEEECTTSSEEEEEETTC-EEEEEES
T ss_pred --------ccCCCCCEEEEEcCCCEEEEEcC-CCcee------EEEcCccccceEEEECCCCCEEEEEcCCC-eEEEEEC
Confidence 00011235899999999999994 34333 45678999999999999999999999997 9999999
Q ss_pred C-CCeEEEEecCCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEE--Eec----------ccCCcceEEEEEcCCCC
Q 001349 1012 S-NYNMVGSLPTLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIE--TLQ----------TGTSGKVQCMALDDNEE 1077 (1094)
Q Consensus 1012 ~-~~~~~~~~~~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~--~l~----------~~h~~~I~~l~~Spdg~ 1077 (1094)
. .......+.+...|.+++|+|+ .+++++.|+.|++||+.+++... .+. .+|...|++++|+|+|+
T Consensus 243 ~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 322 (343)
T 2xzm_R 243 LNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK 322 (343)
T ss_dssp SCCSSCSEEEECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSC
T ss_pred CCCcccceeecCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCC
Confidence 4 4555566667778999999999 44556678889999998776433 432 16788899999999999
Q ss_pred EEEEEeCCCcEEEEeC
Q 001349 1078 FLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1078 ~L~sgs~DG~I~iWdl 1093 (1094)
+|++|+.||+|++|++
T Consensus 323 ~l~sg~~Dg~v~~w~~ 338 (343)
T 2xzm_R 323 KLFAGFTDGVIRTFSF 338 (343)
T ss_dssp CEEEEETTSEEEEEEE
T ss_pred eEEEecCCceEEEEEE
Confidence 9999999999999996
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-33 Score=316.94 Aligned_cols=278 Identities=16% Similarity=0.227 Sum_probs=224.1
Q ss_pred ceeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEe-cc-cCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 001349 805 LVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQI-RE-HTKAVTGLAILQSGEMLYSGSLDKTARVW 882 (1094)
Q Consensus 805 ~~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l-~~-H~~~V~sv~fspdg~~LaSgs~DgtI~vW 882 (1094)
....+.+|.+.|++++|++++|++|+.||+|++||+.++....+..+ .+ |.+.|++++|+|++++|++|+.|++|++|
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw 85 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIW 85 (330)
T ss_dssp EEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 34567899999999999999999999999999999988644556666 44 99999999999999999999999999999
Q ss_pred ECCCCc-----eEE-EEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC----------------CCCceE
Q 001349 883 SIGNEE-----IHC-VQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS----------------SKYPKC 940 (1094)
Q Consensus 883 di~~~~-----~~~-~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~----------------~~~v~~ 940 (1094)
|+..+. ... .....|...|.+++ |+|+|+++++++.|+.+++|+. ...|.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~-------~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~ 158 (330)
T 2hes_X 86 AKEESADRTFEMDLLAIIEGHENEVKGVA-------WSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKH 158 (330)
T ss_dssp EC-------CCCEEEEEEC----CEEEEE-------ECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEE
T ss_pred EcccCcCccccceeEEEEcCCCCcEEEEE-------ECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEE
Confidence 986421 122 22345778888888 9999999999999999999985 234788
Q ss_pred EEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC--ccEEEEEECCCCEEEEEECCCC--
Q 001349 941 LALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG--LVYTASTSLDGAAVKMWSTSNY-- 1014 (1094)
Q Consensus 941 l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~--~~~las~s~Dg~~I~iwd~~~~-- 1014 (1094)
+.|++ ..+++|+.|++|++||..++..... ..+.+|...|.+++|+|+ +.++++++.|+ +|++||+.++
T Consensus 159 v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~----~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~-~v~iw~~~~~~~ 233 (330)
T 2hes_X 159 VIWHPSEALLASSSYDDTVRIWKDYDDDWECV----AVLNGHEGTVWSSDFDKTEGVFRLCSGSDDS-TVRVWKYMGDDE 233 (330)
T ss_dssp EEECSSSSEEEEEETTSCEEEEEEETTEEEEE----EEECCCSSCEEEEEECCSSSSCEEEEEETTS-CEEEEEEEEECT
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCCeeEE----EEccCCCCcEEEEEecCCCCeeEEEEEeCCC-eEEEEEecCCCc
Confidence 88875 4699999999999999887632111 567789999999999998 77899999996 9999998754
Q ss_pred ------eEEEEec--CCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCc--EEEEecccCCc-ceEEEEEcC--CCCEEE
Q 001349 1015 ------NMVGSLP--TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQI--RIETLQTGTSG-KVQCMALDD--NEEFLV 1080 (1094)
Q Consensus 1015 ------~~~~~~~--~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~--~~~~l~~~h~~-~I~~l~~Sp--dg~~L~ 1080 (1094)
.+...+. |...|.+++|+++ ++++|+.||+|++||..++. .+.....+|.. .|++++|+| ++++|+
T Consensus 234 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~la 313 (330)
T 2hes_X 234 DDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILA 313 (330)
T ss_dssp TSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEE
T ss_pred cccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEE
Confidence 3444554 6788999999987 89999999999999998874 34444357877 899999999 789999
Q ss_pred EEeCCCcEEEEeCC
Q 001349 1081 IGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1081 sgs~DG~I~iWdls 1094 (1094)
+|+.||+|++||+.
T Consensus 314 s~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 314 TGGDDGIVNFWSLE 327 (330)
T ss_dssp EEETTSEEEEEEC-
T ss_pred EecCCCcEEEEEec
Confidence 99999999999974
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-33 Score=322.55 Aligned_cols=279 Identities=20% Similarity=0.315 Sum_probs=227.4
Q ss_pred hhccccccccccCcEEEEeeCCCCeEEEeCCc--ceeecccCC------------------CcEEEEEEeCC--EEEEEE
Q 001349 773 RELRKYSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSEN------------------GKVLSIACFRD--KIFSGH 830 (1094)
Q Consensus 773 ~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~------------------~~V~~l~fspd--~LaSgs 830 (1094)
...+....|++|+.++++|+ ++++++|+... ....+..|. ..|++++|+|+ +|++|+
T Consensus 64 ~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~ 142 (393)
T 1erj_A 64 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA 142 (393)
T ss_dssp SSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred CCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEc
Confidence 34455677888999999976 78999999873 333333332 34999999997 999999
Q ss_pred CCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCce
Q 001349 831 SDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSI 910 (1094)
Q Consensus 831 ~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~ 910 (1094)
.||+|++||+.++ +.+..+.+|...|++++|+|++++|++|+.|++|++||+.+++. .....+...+.++.
T Consensus 143 ~d~~i~iwd~~~~--~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~----- 213 (393)
T 1erj_A 143 EDRLIRIWDIENR--KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC--SLTLSIEDGVTTVA----- 213 (393)
T ss_dssp TTSCEEEEETTTT--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--EEEEECSSCEEEEE-----
T ss_pred CCCeEEEEECCCC--cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee--EEEEEcCCCcEEEE-----
Confidence 9999999999998 78889999999999999999999999999999999999999753 22233345555555
Q ss_pred EEEee-CCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccc-eeecCCCCCeEEEE
Q 001349 911 LCFIP-QGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGH-RKLLGKANPVHALQ 988 (1094)
Q Consensus 911 ~~fsp-dg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~-~~~~~h~~~V~sl~ 988 (1094)
|+| +|+ .+++|+.||.|++||++++.....+... ....+|...|++++
T Consensus 214 --~~~~~~~----------------------------~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 263 (393)
T 1erj_A 214 --VSPGDGK----------------------------YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV 263 (393)
T ss_dssp --ECSTTCC----------------------------EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEE
T ss_pred --EECCCCC----------------------------EEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEE
Confidence 666 444 4889999999999999999876543211 12367999999999
Q ss_pred EeCCccEEEEEECCCCEEEEEECCCC------------eEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCC
Q 001349 989 VHNGLVYTASTSLDGAAVKMWSTSNY------------NMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQ 1053 (1094)
Q Consensus 989 fs~~~~~las~s~Dg~~I~iwd~~~~------------~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~ 1053 (1094)
|+|++.++++++.|+ +|++||+++. .+...+. |...|.+++|+++ ++++|+.||.|++||..++
T Consensus 264 ~~~~g~~l~s~s~d~-~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~ 342 (393)
T 1erj_A 264 FTRDGQSVVSGSLDR-SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 342 (393)
T ss_dssp ECTTSSEEEEEETTS-EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred ECCCCCEEEEEeCCC-EEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 999999999999997 9999999753 2334444 7788999999987 8999999999999999999
Q ss_pred cEEEEecccCCcceEEEEEcC------CCCEEEEEeCCCcEEEEeC
Q 001349 1054 IRIETLQTGTSGKVQCMALDD------NEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1054 ~~~~~l~~~h~~~I~~l~~Sp------dg~~L~sgs~DG~I~iWdl 1093 (1094)
+++..+ .+|.+.|.+++|++ ++++|++|+.||+|++|++
T Consensus 343 ~~~~~l-~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 343 NPLLML-QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 387 (393)
T ss_dssp CEEEEE-ECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred eEEEEE-CCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcc
Confidence 999998 58999999999986 6889999999999999986
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=335.98 Aligned_cols=296 Identities=23% Similarity=0.396 Sum_probs=259.6
Q ss_pred cccccccccCcEEEEeeCCCCeEEEeCC-cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEec
Q 001349 776 RKYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIR 852 (1094)
Q Consensus 776 ~~~~~~~~d~~~l~s~s~dg~I~vWd~~-~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~ 852 (1094)
+....+.+++.++++++.|+.|++||.. +....+.+|...|.+++|+|+ .+++++.|++|++||... ..+..+.
T Consensus 224 v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~---~~~~~~~ 300 (577)
T 2ymu_A 224 VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG---QLLQTLT 300 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS---CEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC---cEEEEEe
Confidence 3455677889999999999999999987 566778899999999999997 999999999999999765 4678889
Q ss_pred ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEE
Q 001349 853 EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLL 932 (1094)
Q Consensus 853 ~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~ 932 (1094)
+|...|++++|+|++++|++++.||+|++||..+.... ....+...+.+++ |+|+|+.++++..++.+++|
T Consensus 301 ~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~--~~~~~~~~v~~~~-------~s~~g~~l~~~~~dg~v~~~ 371 (577)
T 2ymu_A 301 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQ--TLTGHSSSVWGVA-------FSPDGQTIASASDDKTVKLW 371 (577)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEE--EECCCSSCEEEEE-------ECTTSSEEEEEETTSEEEEE
T ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeE--EEeCCCCCEEEEE-------ECCCCCEEEEEeCCCEEEEE
Confidence 99999999999999999999999999999999876433 3345677888877 99999999999999999999
Q ss_pred cC-----------CCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEE
Q 001349 933 NS-----------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAST 999 (1094)
Q Consensus 933 ~~-----------~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~ 999 (1094)
+. ...|.+++|++ ..+++++.|+.|++||. +++.. ..+.+|...|++++|+|++.+++++
T Consensus 372 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~------~~~~~~~~~v~~~~~s~d~~~l~~~ 444 (577)
T 2ymu_A 372 NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLL------QTLTGHSSSVWGVAFSPDDQTIASA 444 (577)
T ss_dssp ETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEE------EEEECCSSCEEEEEECTTSSEEEEE
T ss_pred cCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEE------EEecCCCCCeEEEEECCCCCEEEEE
Confidence 74 45688999986 35999999999999995 45554 5667899999999999999999999
Q ss_pred ECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCC
Q 001349 1000 SLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNE 1076 (1094)
Q Consensus 1000 s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg 1076 (1094)
+.|+ +|++||. +++.+..+. |...|.+++|+|+ ++++++.|++|++||. +++.+..+ .+|.+.|++++|+|||
T Consensus 445 ~~d~-~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~-~~h~~~v~~l~~s~dg 520 (577)
T 2ymu_A 445 SDDK-TVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL-TGHSSSVRGVAFSPDG 520 (577)
T ss_dssp ETTS-EEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEE-ECCSSCEEEEEECTTS
T ss_pred cCCC-EEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEE-eCCCCCEEEEEEcCCC
Confidence 9996 9999997 456666665 7889999999998 8999999999999995 67888888 5899999999999999
Q ss_pred CEEEEEeCCCcEEEEeCC
Q 001349 1077 EFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1077 ~~L~sgs~DG~I~iWdls 1094 (1094)
++|++++.||+|++||.+
T Consensus 521 ~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 521 QTIASASDDKTVKLWNRN 538 (577)
T ss_dssp SCEEEEETTSEEEEECTT
T ss_pred CEEEEEECcCEEEEEeCC
Confidence 999999999999999963
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=307.43 Aligned_cols=278 Identities=18% Similarity=0.286 Sum_probs=235.0
Q ss_pred hhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCccee
Q 001349 772 LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHL 847 (1094)
Q Consensus 772 ~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~ 847 (1094)
|...+....+.+++.++++++.||.|++|+.. .....+.+|...|.+++|+|+ +|++|+.||+|++||+.++ .+
T Consensus 22 h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~--~~ 99 (312)
T 4ery_A 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KC 99 (312)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CE
T ss_pred cCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC--cE
Confidence 33445566788899999999999999999986 456678899999999999996 9999999999999999998 78
Q ss_pred EEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCC
Q 001349 848 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNG 927 (1094)
Q Consensus 848 ~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g 927 (1094)
+..+.+|...|.++.|+|++++|++|+.||+|++||+.+++. ......+..+|.++. |+|+|+
T Consensus 100 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~-------~~~~~~--------- 162 (312)
T 4ery_A 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVH-------FNRDGS--------- 162 (312)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEE-------ECTTSS---------
T ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE-EEEecCCCCcEEEEE-------EcCCCC---------
Confidence 889999999999999999999999999999999999998752 222234556676666 677666
Q ss_pred eEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEE
Q 001349 928 KTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVK 1007 (1094)
Q Consensus 928 ~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~ 1007 (1094)
.+++|+.||.|++||+++++....+ ...+...+..++|+|++.++++++.|+ .|+
T Consensus 163 -------------------~l~~~~~d~~i~~wd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~ 217 (312)
T 4ery_A 163 -------------------LIVSSSYDGLCRIWDTASGQCLKTL-----IDDDNPPVSFVKFSPNGKYILAATLDN-TLK 217 (312)
T ss_dssp -------------------EEEEEETTSCEEEEETTTCCEEEEE-----CCSSCCCEEEEEECTTSSEEEEEETTT-EEE
T ss_pred -------------------EEEEEeCCCcEEEEECCCCceeeEE-----eccCCCceEEEEECCCCCEEEEEcCCC-eEE
Confidence 3889999999999999998876422 234667899999999999999999997 999
Q ss_pred EEECCCCeEEEEec-CCCC--EEEEEEe-CC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEE
Q 001349 1008 MWSTSNYNMVGSLP-TLSE--VRAMVVS-SE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVI 1081 (1094)
Q Consensus 1008 iwd~~~~~~~~~~~-~~~~--v~~l~~s-pd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~s 1081 (1094)
+||+++++.+..+. |... .....++ ++ ++++|+.||.|++||+.+++.+..+ .+|.+.|.+++|+|+++++++
T Consensus 218 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s 296 (312)
T 4ery_A 218 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL-QGHTDVVISTACHPTENIIAS 296 (312)
T ss_dssp EEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECSSSSEEEE
T ss_pred EEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhh-hccCCcEEEEeecCcCCceEE
Confidence 99999999998887 3322 2223333 33 8999999999999999999999999 589999999999999999999
Q ss_pred Ee--CCCcEEEEeCC
Q 001349 1082 GT--SDGRIQAWGLS 1094 (1094)
Q Consensus 1082 gs--~DG~I~iWdls 1094 (1094)
++ .||+|++|+..
T Consensus 297 ~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 297 AALENDKTIKLWKSD 311 (312)
T ss_dssp EECTTTCCEEEEECC
T ss_pred EEccCCccEEEecCC
Confidence 97 69999999863
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=309.72 Aligned_cols=245 Identities=19% Similarity=0.261 Sum_probs=215.6
Q ss_pred ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 001349 805 LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVW 882 (1094)
Q Consensus 805 ~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vW 882 (1094)
...++.+|.+.|++++|+|+ +|++|+.||+|++||+.++ ..+..+..|...|.+++|+|++++|++|+.|++|++|
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ--VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC--ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 35677899999999999997 9999999999999999998 7889999999999999999999999999999999999
Q ss_pred ECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEEC
Q 001349 883 SIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDL 962 (1094)
Q Consensus 883 di~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl 962 (1094)
|+.+++. ......|...|.+++ |+|++.. +++|+.||+|++||+
T Consensus 83 d~~~~~~-~~~~~~h~~~v~~~~-------~~~~~~~----------------------------l~sgs~D~~v~lWd~ 126 (304)
T 2ynn_A 83 NYNTGEK-VVDFEAHPDYIRSIA-------VHPTKPY----------------------------VLSGSDDLTVKLWNW 126 (304)
T ss_dssp ETTTCCE-EEEEECCSSCEEEEE-------ECSSSSE----------------------------EEEEETTSCEEEEEG
T ss_pred ECCCCcE-EEEEeCCCCcEEEEE-------EcCCCCE----------------------------EEEECCCCeEEEEEC
Confidence 9999862 223345677777777 7777764 889999999999999
Q ss_pred CCCceeEEeccceeecCCCCCeEEEEEeC-CccEEEEEECCCCEEEEEECCCCeEEEEec--CCCCEEEEEEeC--C--E
Q 001349 963 ATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDGAAVKMWSTSNYNMVGSLP--TLSEVRAMVVSS--E--L 1035 (1094)
Q Consensus 963 ~~~~~~~~~~~~~~~~~h~~~V~sl~fs~-~~~~las~s~Dg~~I~iwd~~~~~~~~~~~--~~~~v~~l~~sp--d--~ 1035 (1094)
+++.... ..+.+|...|.+++|+| ++.++++++.|+ +|++||++++.....+. +...+..+.++| + +
T Consensus 127 ~~~~~~~-----~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~-~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 200 (304)
T 2ynn_A 127 ENNWALE-----QTFEGHEHFVMCVAFNPKDPSTFASGCLDR-TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY 200 (304)
T ss_dssp GGTTEEE-----EEECCCCSCEEEEEECTTCTTEEEEEETTS-EEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCE
T ss_pred CCCcchh-----hhhcccCCcEEEEEECCCCCCEEEEEeCCC-eEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCE
Confidence 8875442 46778999999999998 678999999997 99999998877666655 457799999976 3 8
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1036 VYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1036 l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
+++|+.||+|++||+.+++++..+ .+|...|++++|+|++++|++|+.||+|++||+.
T Consensus 201 l~s~s~D~~i~iWd~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 201 MITASDDLTIKIWDYQTKSCVATL-EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258 (304)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred EEEEcCCCeEEEEeCCCCccceee-CCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 999999999999999999999999 5899999999999999999999999999999973
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-32 Score=320.03 Aligned_cols=293 Identities=22% Similarity=0.336 Sum_probs=258.8
Q ss_pred ccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCC
Q 001349 779 SPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTK 856 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~ 856 (1094)
..+.+++.++++|+.||+|++||.. .....+.+|.+.|++++|+++++++|+.||+|++||+.++ ..+..+.+|..
T Consensus 123 ~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~h~~ 200 (445)
T 2ovr_B 123 TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETG--ECIHTLYGHTS 200 (445)
T ss_dssp EEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT--EEEEEECCCSS
T ss_pred EEEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcC--cEEEEECCCCC
Confidence 3577889999999999999999987 5567788999999999999999999999999999999999 78899999999
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC--
Q 001349 857 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS-- 934 (1094)
Q Consensus 857 ~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~-- 934 (1094)
.|.++.|+ ++.+++|+.||+|++||+.+++.. .....+...+.++. | +|..+++++.+|.+++|+.
T Consensus 201 ~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~-~~~~~~~~~v~~~~-------~--~~~~l~~~~~dg~i~iwd~~~ 268 (445)
T 2ovr_B 201 TVRCMHLH--EKRVVSGSRDATLRVWDIETGQCL-HVLMGHVAAVRCVQ-------Y--DGRRVVSGAYDFMVKVWDPET 268 (445)
T ss_dssp CEEEEEEE--TTEEEEEETTSEEEEEESSSCCEE-EEEECCSSCEEEEE-------E--CSSCEEEEETTSCEEEEEGGG
T ss_pred cEEEEEec--CCEEEEEeCCCEEEEEECCCCcEE-EEEcCCcccEEEEE-------E--CCCEEEEEcCCCEEEEEECCC
Confidence 99999995 678999999999999999987632 22334567777766 4 7889999999999999973
Q ss_pred ----------CCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCC
Q 001349 935 ----------SKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGA 1004 (1094)
Q Consensus 935 ----------~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~ 1004 (1094)
...+.++.+.+..+++|+.||.|++||+.+++.. ..+.+|...+.++.+++ .++++++.||
T Consensus 269 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~------~~~~~~~~~v~~~~~~~--~~l~~~~~dg- 339 (445)
T 2ovr_B 269 ETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCI------HTLTGHQSLTSGMELKD--NILVSGNADS- 339 (445)
T ss_dssp TEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEE------EEECCCCSCEEEEEEET--TEEEEEETTS-
T ss_pred CcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEE------EEEcCCcccEEEEEEeC--CEEEEEeCCC-
Confidence 4678999998889999999999999999999887 45667888999888864 4788888886
Q ss_pred EEEEEECCCCeEEEEec----CCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEec----ccCCcceEEEEEcCCC
Q 001349 1005 AVKMWSTSNYNMVGSLP----TLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQ----TGTSGKVQCMALDDNE 1076 (1094)
Q Consensus 1005 ~I~iwd~~~~~~~~~~~----~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~----~~h~~~I~~l~~Spdg 1076 (1094)
.|++||+++++.+..+. |...|.+++|+++++++|+.||.|++||+.+++.+..+. .+|.+.|++++|+|++
T Consensus 340 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 419 (445)
T 2ovr_B 340 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTK 419 (445)
T ss_dssp CEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSE
T ss_pred eEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCE
Confidence 99999999999998887 567899999999999999999999999999999888872 3678899999999999
Q ss_pred CEEEEEeCCCc----EEEEeCC
Q 001349 1077 EFLVIGTSDGR----IQAWGLS 1094 (1094)
Q Consensus 1077 ~~L~sgs~DG~----I~iWdls 1094 (1094)
.++++|+.||+ |.+||+.
T Consensus 420 ~~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 420 LVCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp EEEEEECSSSSSCCEEEEEECC
T ss_pred EEEEEcccCCCCccEEEEEECC
Confidence 99999999998 9999974
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-32 Score=315.71 Aligned_cols=298 Identities=12% Similarity=0.143 Sum_probs=250.2
Q ss_pred cccccccccCc-EEEEeeCCCCeEEEeC----Ccc--------eeeccc----------CCCcEEEEEEeCC--EEEEEE
Q 001349 776 RKYSPLAFEMV-KVLSNGHDSSADFWNH----REL--------VHVDSS----------ENGKVLSIACFRD--KIFSGH 830 (1094)
Q Consensus 776 ~~~~~~~~d~~-~l~s~s~dg~I~vWd~----~~~--------~~~~~~----------h~~~V~~l~fspd--~LaSgs 830 (1094)
+....+.+++. ++++++.||.|++|++ ... ...+.. |.+.|++++|+|+ +|++|+
T Consensus 48 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 127 (425)
T 1r5m_A 48 IVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGV 127 (425)
T ss_dssp CSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEE
T ss_pred eEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEe
Confidence 34566778898 9999999999999999 522 222222 6789999999997 999999
Q ss_pred CCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCcc----------
Q 001349 831 SDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQ---------- 900 (1094)
Q Consensus 831 ~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~---------- 900 (1094)
.||.|++|| .++ ..+..+.+|...|++++|+|++++|++++.||+|++||+.+++..... ..+...
T Consensus 128 ~dg~i~i~~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~ 203 (425)
T 1r5m_A 128 ENGELRLWN-KTG--ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHF-ELKETGGSSINAENHS 203 (425)
T ss_dssp TTSCEEEEE-TTS--CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEE-CCC-------------
T ss_pred CCCeEEEEe-CCC--CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEe-eccccCccceeecccc
Confidence 999999999 445 578889999999999999999999999999999999999988532222 112222
Q ss_pred -----ceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC------------CCCceEEEEeC--CEEEEEEcCCeEEEEE
Q 001349 901 -----IQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS------------SKYPKCLALVQ--GKVYCGCQDGAIQEID 961 (1094)
Q Consensus 901 -----V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~------------~~~v~~l~~s~--~~l~sgs~Dg~I~iwD 961 (1094)
+.++. |++++. ++++..+|.+.+|+. ...+.++.+++ ..+++++.||.|++||
T Consensus 204 ~~~~~~~~~~-------~~~~~~-~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d 275 (425)
T 1r5m_A 204 GDGSLGVDVE-------WVDDDK-FVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH 275 (425)
T ss_dssp --CCCBSCCE-------EEETTE-EEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEC
T ss_pred CCcceeeEEE-------EcCCCE-EEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 55555 888754 778888999999974 45688999985 4699999999999999
Q ss_pred CCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEE
Q 001349 962 LATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYL 1038 (1094)
Q Consensus 962 l~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~s 1038 (1094)
+.+++.. ..+.+|...|.++.|+|++ ++++++.|+ .|++||+.+++.+..+. |...+.+++|+|+ ++++
T Consensus 276 ~~~~~~~------~~~~~~~~~i~~~~~~~~~-~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 347 (425)
T 1r5m_A 276 GGNGNSQ------NCFYGHSQSIVSASWVGDD-KVISCSMDG-SVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAV 347 (425)
T ss_dssp SSSBSCS------EEECCCSSCEEEEEEETTT-EEEEEETTS-EEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEE
T ss_pred CCCCccc------eEecCCCccEEEEEECCCC-EEEEEeCCC-cEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEE
Confidence 9988776 4566788999999999999 888998886 99999999999998887 6789999999998 8999
Q ss_pred EEcCCeEEEEECCCCc--------------------EEEEecccCCc--ceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1039 GCKGGTVEIWDQKRQI--------------------RIETLQTGTSG--KVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1039 gs~dg~I~vwd~~t~~--------------------~~~~l~~~h~~--~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
|+.||.|++||+.+++ .+..+ .+|.. .|++++|+|++++|++++.||.|++||+.
T Consensus 348 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 348 AFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASY-QSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EETTSCEEEEECHHHHC--------------CEECCEEEEE-CCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred EECCCeEEEEECCCCccceeeeecccccccCcccchhhhhh-cCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 9999999999999888 88888 47765 99999999999999999999999999984
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=321.73 Aligned_cols=242 Identities=21% Similarity=0.366 Sum_probs=217.7
Q ss_pred eeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 001349 806 VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWS 883 (1094)
Q Consensus 806 ~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWd 883 (1094)
...+.+|.++|++++|+|+ +|++|+.||+|+|||+.++ ....++.+|.+.|++++|+|+|++|++|+.||+|++||
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~--~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD 178 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC--CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Confidence 4567899999999999996 9999999999999999998 67889999999999999999999999999999999999
Q ss_pred CCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECC
Q 001349 884 IGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA 963 (1094)
Q Consensus 884 i~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~ 963 (1094)
+.+++. ......|...|.++. |+|+|. .+++|+.|++|++||+.
T Consensus 179 ~~~~~~-~~~~~~h~~~V~~v~-------~~p~~~----------------------------~l~s~s~D~~i~~wd~~ 222 (410)
T 1vyh_C 179 FQGFEC-IRTMHGHDHNVSSVS-------IMPNGD----------------------------HIVSASRDKTIKMWEVQ 222 (410)
T ss_dssp TTSSCE-EECCCCCSSCEEEEE-------ECSSSS----------------------------EEEEEETTSEEEEEETT
T ss_pred CCCCce-eEEEcCCCCCEEEEE-------EeCCCC----------------------------EEEEEeCCCeEEEEECC
Confidence 988642 222334566777776 777766 48899999999999999
Q ss_pred CCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--------
Q 001349 964 TGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE-------- 1034 (1094)
Q Consensus 964 ~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd-------- 1034 (1094)
++..+ ..+.+|...|.++.|++++.++++++.|+ +|++||+.++.+...+. |...|.+++|+|+
T Consensus 223 ~~~~~------~~~~~h~~~v~~~~~~~~g~~l~s~s~D~-~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 295 (410)
T 1vyh_C 223 TGYCV------KTFTGHREWVRMVRPNQDGTLIASCSNDQ-TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISE 295 (410)
T ss_dssp TCCEE------EEEECCSSCEEEEEECTTSSEEEEEETTS-CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGG
T ss_pred CCcEE------EEEeCCCccEEEEEECCCCCEEEEEcCCC-eEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhh
Confidence 99887 56678999999999999999999999997 99999999999988887 7788999999983
Q ss_pred --------------EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1035 --------------LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1035 --------------~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
++++|+.||+|++||+.+++++..+ .+|.+.|++++|+|+|++|++|+.||+|++||+
T Consensus 296 ~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~-~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~ 367 (410)
T 1vyh_C 296 ATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL-VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367 (410)
T ss_dssp CCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred hccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEE-ECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 7999999999999999999999999 589999999999999999999999999999997
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-31 Score=304.92 Aligned_cols=269 Identities=15% Similarity=0.246 Sum_probs=242.4
Q ss_pred eecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 001349 807 HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSI 884 (1094)
Q Consensus 807 ~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi 884 (1094)
..+.+|.+.|++++|+|+ +|++|+.||.|++||+.++ ..+..+.+|.+.|++++|+|++++|++++.||+|++||+
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG--ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc--hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 457899999999999996 9999999999999999998 788999999999999999999999999999999999999
Q ss_pred CCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeC-----CeEEEEcCCC-----------------------
Q 001349 885 GNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRN-----GKTKLLNSSK----------------------- 936 (1094)
Q Consensus 885 ~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~-----g~i~l~~~~~----------------------- 936 (1094)
.+++.. ....+...+.++. |+|+++.++++..+ +.+.+|+...
T Consensus 104 ~~~~~~--~~~~~~~~v~~~~-------~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (369)
T 3zwl_B 104 SNGQCV--ATWKSPVPVKRVE-------FSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEG 174 (369)
T ss_dssp TTCCEE--EEEECSSCEEEEE-------ECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTT
T ss_pred CCCcEE--EEeecCCCeEEEE-------EccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcC
Confidence 998533 3333677888887 99999999999998 9999998421
Q ss_pred --CceEEEEeC--CEEEEEEcCCeEEEEECCC-CceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEEC
Q 001349 937 --YPKCLALVQ--GKVYCGCQDGAIQEIDLAT-GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWST 1011 (1094)
Q Consensus 937 --~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~-~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~ 1011 (1094)
.+.++.+++ ..+++|+.||.|++||+.+ +... ..+..|...|.+++|+|++.++++++.|+ .|++||+
T Consensus 175 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~v~d~ 247 (369)
T 3zwl_B 175 LDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYV------DSIDLHEKSISDMQFSPDLTYFITSSRDT-NSFLVDV 247 (369)
T ss_dssp CCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEE------EEEECCSSCEEEEEECTTSSEEEEEETTS-EEEEEET
T ss_pred ccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeE------EEEecCCCceeEEEECCCCCEEEEecCCc-eEEEEEC
Confidence 788888875 4799999999999999998 4554 56677889999999999999999999987 9999999
Q ss_pred CCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCC--------------eEEEEECCCCcEEEEecccCCcceEEEEEcCC
Q 001349 1012 SNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGG--------------TVEIWDQKRQIRIETLQTGTSGKVQCMALDDN 1075 (1094)
Q Consensus 1012 ~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg--------------~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spd 1075 (1094)
.+++.+..+.+...+..++|+|+ ++++++.++ .+++||..+++.+..+ .+|.+.|++++|+|+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~s~~ 326 (369)
T 3zwl_B 248 STLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV-QGHFGPLNTVAISPQ 326 (369)
T ss_dssp TTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEE-ECCSSCEEEEEECTT
T ss_pred CCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe-ecccCcEEEEEECCC
Confidence 99999999999999999999998 888888887 8999999999999999 589999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCC
Q 001349 1076 EEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1076 g~~L~sgs~DG~I~iWdls 1094 (1094)
+++|++++.||+|++|++.
T Consensus 327 ~~~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 327 GTSYASGGEDGFIRLHHFE 345 (369)
T ss_dssp SSEEEEEETTSEEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEECc
Confidence 9999999999999999974
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-32 Score=305.95 Aligned_cols=244 Identities=20% Similarity=0.334 Sum_probs=214.6
Q ss_pred eecccCCCcEEEEEEeCC------EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEE
Q 001349 807 HVDSSENGKVLSIACFRD------KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTAR 880 (1094)
Q Consensus 807 ~~~~~h~~~V~~l~fspd------~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~ 880 (1094)
....+|.+.|++++|+++ +|+||+.||+|+|||+.++.......+.+|...|.+++|++++.++++++.|++|+
T Consensus 26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~ 105 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 105 (321)
T ss_dssp EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 456789999999999863 89999999999999998875556678899999999999999999999999999999
Q ss_pred EEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEE
Q 001349 881 VWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEI 960 (1094)
Q Consensus 881 vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iw 960 (1094)
+||+.+++.. .....+...+.++. |+|+|+. +++|+.||.|++|
T Consensus 106 lWd~~~~~~~-~~~~~~~~~~~~~~-------~spdg~~----------------------------l~~g~~dg~v~i~ 149 (321)
T 3ow8_A 106 LWDLENGKQI-KSIDAGPVDAWTLA-------FSPDSQY----------------------------LATGTHVGKVNIF 149 (321)
T ss_dssp EEETTTTEEE-EEEECCTTCCCCEE-------ECTTSSE----------------------------EEEECTTSEEEEE
T ss_pred EEECCCCCEE-EEEeCCCccEEEEE-------ECCCCCE----------------------------EEEEcCCCcEEEE
Confidence 9999998522 22223445565655 8888874 7889999999999
Q ss_pred ECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEE
Q 001349 961 DLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVY 1037 (1094)
Q Consensus 961 Dl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~ 1037 (1094)
|+.++... ..+..|...|.+++|+|++.++++++.|| .|++||+++++.+..+. |...|.+++|+|+ +++
T Consensus 150 ~~~~~~~~------~~~~~~~~~v~~~~~spdg~~lasg~~dg-~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~ 222 (321)
T 3ow8_A 150 GVESGKKE------YSLDTRGKFILSIAYSPDGKYLASGAIDG-IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLV 222 (321)
T ss_dssp ETTTCSEE------EEEECSSSCEEEEEECTTSSEEEEEETTS-CEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEE
T ss_pred EcCCCcee------EEecCCCceEEEEEECCCCCEEEEEcCCC-eEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEE
Confidence 99999876 45567788999999999999999999997 99999999999999988 6788999999998 899
Q ss_pred EEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1038 LGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1038 sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
+|+.||+|++||+.+++....+ .+|...|++++|+|++++|++|+.||+|++||+.
T Consensus 223 s~s~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~ 278 (321)
T 3ow8_A 223 TASDDGYIKIYDVQHANLAGTL-SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG 278 (321)
T ss_dssp EECTTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEcCCCeEEEEECCCcceeEEE-cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC
Confidence 9999999999999999999998 5899999999999999999999999999999973
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=336.56 Aligned_cols=273 Identities=20% Similarity=0.298 Sum_probs=236.3
Q ss_pred eecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCc---ceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEE
Q 001349 807 HVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSI---LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTAR 880 (1094)
Q Consensus 807 ~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~---~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~ 880 (1094)
..+.+|++.|++++|+++ +|+||+.||+|++||+.+.. ......+.+|...|++++|+|+|++|+||+.||+|+
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~ 455 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR 455 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence 356799999999999974 89999999999999997642 135677899999999999999999999999999999
Q ss_pred EEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC---------------CCCceEEEEeC
Q 001349 881 VWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS---------------SKYPKCLALVQ 945 (1094)
Q Consensus 881 vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~---------------~~~v~~l~~s~ 945 (1094)
+||+.++.. ......|...|.++. |+|+++.+++++.|+.+++|+. ...|.++.|++
T Consensus 456 vwd~~~~~~-~~~~~~h~~~v~~~~-------~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~ 527 (694)
T 3dm0_A 456 LWDLAAGVS-TRRFVGHTKDVLSVA-------FSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP 527 (694)
T ss_dssp EEETTTTEE-EEEEECCSSCEEEEE-------ECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECS
T ss_pred EEECCCCcc-eeEEeCCCCCEEEEE-------EeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeC
Confidence 999999852 233446788899888 9999999999999999999984 34589999986
Q ss_pred C----EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec
Q 001349 946 G----KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP 1021 (1094)
Q Consensus 946 ~----~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~ 1021 (1094)
+ .+++|+.||+|++||+++++.. ..+.+|...|++++|+|++.++++++.|| +|++||+.+++.+..+.
T Consensus 528 ~~~~~~l~s~s~d~~v~vwd~~~~~~~------~~~~~h~~~v~~v~~spdg~~l~sg~~Dg-~i~iwd~~~~~~~~~~~ 600 (694)
T 3dm0_A 528 NTLQPTIVSASWDKTVKVWNLSNCKLR------STLAGHTGYVSTVAVSPDGSLCASGGKDG-VVLLWDLAEGKKLYSLE 600 (694)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTCCEE------EEECCCSSCEEEEEECTTSSEEEEEETTS-BCEEEETTTTEEEECCB
T ss_pred CCCcceEEEEeCCCeEEEEECCCCcEE------EEEcCCCCCEEEEEEeCCCCEEEEEeCCC-eEEEEECCCCceEEEec
Confidence 3 5999999999999999998876 56778999999999999999999999997 99999999999999988
Q ss_pred CCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEecccC------------------CcceEEEEEcCCCCEEEEE
Q 001349 1022 TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGT------------------SGKVQCMALDDNEEFLVIG 1082 (1094)
Q Consensus 1022 ~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~~~h------------------~~~I~~l~~Spdg~~L~sg 1082 (1094)
++..+.+++|+|+ .+++++.++.|+|||+.++..+..+...+ ...+++++|||||++|++|
T Consensus 601 ~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sg 680 (694)
T 3dm0_A 601 ANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSG 680 (694)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEE
T ss_pred CCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEE
Confidence 8889999999999 45555667789999999999888774211 1137899999999999999
Q ss_pred eCCCcEEEEeCC
Q 001349 1083 TSDGRIQAWGLS 1094 (1094)
Q Consensus 1083 s~DG~I~iWdls 1094 (1094)
+.||+|++|++.
T Consensus 681 s~Dg~i~iW~i~ 692 (694)
T 3dm0_A 681 YTDGVIRVWGIG 692 (694)
T ss_dssp ETTSEEEEEEC-
T ss_pred cCCCeEEEEecc
Confidence 999999999984
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-33 Score=322.89 Aligned_cols=305 Identities=11% Similarity=0.122 Sum_probs=254.0
Q ss_pred cccccccccCc-EEEEe----------eCCCCeEEEeCCcc----eeecccCCCcEEEEEEeCC--EEEEEECCCeEEEE
Q 001349 776 RKYSPLAFEMV-KVLSN----------GHDSSADFWNHREL----VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVW 838 (1094)
Q Consensus 776 ~~~~~~~~d~~-~l~s~----------s~dg~I~vWd~~~~----~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vW 838 (1094)
+....+++++. +++++ +.|+.|++||.... ......|.+.|++++|+|+ +|++|+.||+|++|
T Consensus 15 v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw 94 (416)
T 2pm9_A 15 TATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELY 94 (416)
T ss_dssp SCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEE
T ss_pred cceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEe
Confidence 34566778887 89999 89999999999732 2233468999999999997 99999999999999
Q ss_pred ecCCC--cceeEEEecccCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCc------eEE--EEecccCccceeeeec
Q 001349 839 TGRGS--ILHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEE------IHC--VQVHDIKDQIQNLAVS 907 (1094)
Q Consensus 839 d~~t~--~~~~~~~l~~H~~~V~sv~fspd-g~~LaSgs~DgtI~vWdi~~~~------~~~--~~~~~~~~~V~~v~~~ 907 (1094)
|+.+. ....+..+.+|.+.|++++|+|+ +++|++++.||+|++||+.+++ ... .....+...|.++.
T Consensus 95 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-- 172 (416)
T 2pm9_A 95 STNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA-- 172 (416)
T ss_dssp CCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEE--
T ss_pred ecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEE--
Confidence 99871 11478889999999999999998 8999999999999999999874 111 11234667788877
Q ss_pred CceEEEeeC-CCeEEEEEeCCeEEEEcC------------------CCCceEEEEeCC---EEEEEEcCC---eEEEEEC
Q 001349 908 NSILCFIPQ-GAGIKVHLRNGKTKLLNS------------------SKYPKCLALVQG---KVYCGCQDG---AIQEIDL 962 (1094)
Q Consensus 908 ~~~~~fspd-g~~l~~~~~~g~i~l~~~------------------~~~v~~l~~s~~---~l~sgs~Dg---~I~iwDl 962 (1094)
|+|+ +..++++..++.+++|+. ...+.++.|+++ .+++++.|+ .|++||+
T Consensus 173 -----~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~ 247 (416)
T 2pm9_A 173 -----WNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL 247 (416)
T ss_dssp -----ECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEET
T ss_pred -----eCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeC
Confidence 9999 788899999999999984 356889999863 699999999 9999999
Q ss_pred CCCc-eeEEeccceeec-CCCCCeEEEEEeC-CccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC---E
Q 001349 963 ATGT-FATIQTGHRKLL-GKANPVHALQVHN-GLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE---L 1035 (1094)
Q Consensus 963 ~~~~-~~~~~~~~~~~~-~h~~~V~sl~fs~-~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd---~ 1035 (1094)
+++. .. ..+. +|...|++++|+| ++.++++++.|+ .|++||+.+++.+..+. |...|.+++|+|+ +
T Consensus 248 ~~~~~~~------~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg-~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 320 (416)
T 2pm9_A 248 RNANTPL------QTLNQGHQKGILSLDWCHQDEHLLLSSGRDN-TVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDL 320 (416)
T ss_dssp TSTTSCS------BCCCSCCSSCEEEEEECSSCSSCEEEEESSS-EEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTE
T ss_pred CCCCCCc------EEeecCccCceeEEEeCCCCCCeEEEEeCCC-CEEEeeCCCCccceeecCCCCceEEEEECCCCCCE
Confidence 9874 33 4555 7899999999999 999999999997 99999999999999887 6788999999996 7
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEe----------------------------------cccCCcceEEEEEcCCCCEEEE
Q 001349 1036 VYLGCKGGTVEIWDQKRQIRIETL----------------------------------QTGTSGKVQCMALDDNEEFLVI 1081 (1094)
Q Consensus 1036 l~sgs~dg~I~vwd~~t~~~~~~l----------------------------------~~~h~~~I~~l~~Spdg~~L~s 1081 (1094)
+++++.||.|++||+.++...... ...|...+++++|+|||++|++
T Consensus 321 l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~ 400 (416)
T 2pm9_A 321 FACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQI 400 (416)
T ss_dssp EEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECB
T ss_pred EEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEE
Confidence 999999999999999876532211 0115678889999999999999
Q ss_pred EeCCCcEEEEeCC
Q 001349 1082 GTSDGRIQAWGLS 1094 (1094)
Q Consensus 1082 gs~DG~I~iWdls 1094 (1094)
|+.||+|+||++.
T Consensus 401 ~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 401 TPDGKGVSITNPK 413 (416)
T ss_dssp CTTSSCBCCBCCC
T ss_pred eCCCCeEEEEEec
Confidence 9999999999974
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-31 Score=297.22 Aligned_cols=300 Identities=12% Similarity=0.123 Sum_probs=252.1
Q ss_pred cccccccccCcEEEEeeCCCCeEEEeCCc--ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcc-eeEEE
Q 001349 776 RKYSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSIL-HLIQQ 850 (1094)
Q Consensus 776 ~~~~~~~~d~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~-~~~~~ 850 (1094)
+....+++||..++++..++.+..|.... ......+|.+.|++++|+|+ ++++++ ||.|++||+.++.. ..+..
T Consensus 12 v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~ 90 (337)
T 1gxr_A 12 AYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQ 90 (337)
T ss_dssp CCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEE
T ss_pred eeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeec
Confidence 34567888999999988888777776552 22334579999999999997 888888 99999999987621 23333
Q ss_pred ec--ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEE-EEecccCccceeeeecCceEEEeeCCCeEEEEEeCC
Q 001349 851 IR--EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHC-VQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNG 927 (1094)
Q Consensus 851 l~--~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~-~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g 927 (1094)
+. +|...|++++|+|++++|++++.||+|++||+.+++... .....+...+.++. |+|+++.+++++.+|
T Consensus 91 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~-------~~~~~~~l~~~~~dg 163 (337)
T 1gxr_A 91 LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA-------ISPDSKVCFSCCSDG 163 (337)
T ss_dssp EECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEE-------ECTTSSEEEEEETTS
T ss_pred ccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEE-------ECCCCCEEEEEeCCC
Confidence 33 799999999999999999999999999999999876323 33345667788877 999999999999999
Q ss_pred eEEEEcC------------CCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCc
Q 001349 928 KTKLLNS------------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL 993 (1094)
Q Consensus 928 ~i~l~~~------------~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~ 993 (1094)
.+.+|+. ...+.++.+++ ..+++++.||.|++||+++++....+ .|...+.+++|+|++
T Consensus 164 ~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-------~~~~~v~~~~~s~~~ 236 (337)
T 1gxr_A 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-------DFTSQIFSLGYCPTG 236 (337)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-------ECSSCEEEEEECTTS
T ss_pred cEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee-------cCCCceEEEEECCCC
Confidence 9999984 45688999975 47999999999999999998876432 356789999999999
Q ss_pred cEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEE
Q 001349 994 VYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMA 1071 (1094)
Q Consensus 994 ~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~ 1071 (1094)
.++++++.++ .|++||+.++.......|...+.+++|+|+ ++++++.||.|++||+.+++.+... .|...|++++
T Consensus 237 ~~l~~~~~~~-~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~--~~~~~v~~~~ 313 (337)
T 1gxr_A 237 EWLAVGMESS-NVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS--KESSSVLSCD 313 (337)
T ss_dssp SEEEEEETTS-CEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--ECSSCEEEEE
T ss_pred CEEEEEcCCC-cEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe--cCCCcEEEEE
Confidence 9999999886 999999999887666568899999999998 8999999999999999999988665 5888999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeC
Q 001349 1072 LDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1072 ~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
|+|++++|++++.||.|++|++
T Consensus 314 ~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 314 ISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ECTTSCEEEEEETTSCEEEEEE
T ss_pred ECCCCCEEEEecCCCeEEEEEE
Confidence 9999999999999999999996
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-30 Score=298.88 Aligned_cols=243 Identities=16% Similarity=0.273 Sum_probs=210.5
Q ss_pred ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 001349 805 LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVW 882 (1094)
Q Consensus 805 ~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vW 882 (1094)
....+.+|.+.|++++|+|+ +|++|+.||+|++||..++ ..+..+..|...|.+++|+|+|++|++|+.|++|++|
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT--NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC--CEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC--CcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 35678899999999999997 9999999999999999998 7888899999999999999999999999999999999
Q ss_pred ECCCCce--E-EEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEe-CCEEEEEEcCCeEE
Q 001349 883 SIGNEEI--H-CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV-QGKVYCGCQDGAIQ 958 (1094)
Q Consensus 883 di~~~~~--~-~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s-~~~l~sgs~Dg~I~ 958 (1094)
|+.++.. . ...... |...+.++.|. ++.+++++.|++|+
T Consensus 125 ~~~~~~~~~~~~~~~~~-------------------------------------h~~~v~~~~~~~~~~l~s~s~d~~i~ 167 (340)
T 1got_B 125 NLKTREGNVRVSRELAG-------------------------------------HTGYLSCCRFLDDNQIVTSSGDTTCA 167 (340)
T ss_dssp ETTTCSBSCEEEEEEEC-------------------------------------CSSCEEEEEEEETTEEEEEETTSCEE
T ss_pred ECccCCCcceeEEEecC-------------------------------------CCccEEEEEECCCCcEEEEECCCcEE
Confidence 9987531 1 111112 33344455554 35689999999999
Q ss_pred EEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--E
Q 001349 959 EIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--L 1035 (1094)
Q Consensus 959 iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~ 1035 (1094)
+||+.++... ..+.+|...|.+++|+|++.++++++.|+ +|++||++++.+...+. |...|.+++|+|+ +
T Consensus 168 ~wd~~~~~~~------~~~~~h~~~v~~~~~~~~~~~l~sg~~d~-~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~ 240 (340)
T 1got_B 168 LWDIETGQQT------TTFTGHTGDVMSLSLAPDTRLFVSGACDA-SAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 240 (340)
T ss_dssp EEETTTTEEE------EEECCCSSCEEEEEECTTSSEEEEEETTS-CEEEEETTTCSEEEEECCCSSCEEEEEECTTSSE
T ss_pred EEECCCCcEE------EEEcCCCCceEEEEECCCCCEEEEEeCCC-cEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCE
Confidence 9999999877 56678999999999999999999999997 99999999999999888 7788999999998 8
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEecc-cCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1036 VYLGCKGGTVEIWDQKRQIRIETLQT-GTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1036 l~sgs~dg~I~vwd~~t~~~~~~l~~-~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
+++|+.||+|++||+.+++.+..+.. .+...|++++|+|+|++|++|+.||+|++||+
T Consensus 241 l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~ 299 (340)
T 1got_B 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299 (340)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEc
Confidence 99999999999999999988877741 23347999999999999999999999999996
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-30 Score=311.23 Aligned_cols=289 Identities=18% Similarity=0.252 Sum_probs=241.1
Q ss_pred ccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEecccC
Q 001349 779 SPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHT 855 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~ 855 (1094)
..+.+++.++++|+.||+|++||.. .....+.+|.+.|++++|+++ .+++|+.||+|++||+.++ ..+..+.+|.
T Consensus 126 ~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~--~~~~~~~~h~ 203 (464)
T 3v7d_B 126 TCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKG--CCTHVFEGHN 203 (464)
T ss_dssp EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTT--EEEEEECCCS
T ss_pred EEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCC--cEEEEECCCC
Confidence 3567789999999999999999987 456677899999999999987 9999999999999999999 7889999999
Q ss_pred CCeEEEEEe--cCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEc
Q 001349 856 KAVTGLAIL--QSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN 933 (1094)
Q Consensus 856 ~~V~sv~fs--pdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~ 933 (1094)
+.|.+++|+ ++++++++|+.||+|++||+.++......... .....+. +.|++...... ....
T Consensus 204 ~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~--~~~~~~~-------~~~~~~~~~~~------~~~~ 268 (464)
T 3v7d_B 204 STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE--HDYPLVF-------HTPEENPYFVG------VLRG 268 (464)
T ss_dssp SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC--------CCSSEEE-------SCGGGCTTEEE------EECC
T ss_pred CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccccccccc--CCcceEe-------eccCCCeEEEE------EccC
Confidence 999999999 47899999999999999999986522211111 1111111 22322211111 1223
Q ss_pred CCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCC
Q 001349 934 SSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN 1013 (1094)
Q Consensus 934 ~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~ 1013 (1094)
+...+.++...++.+++|+.||.|++||+.+++.. ..+.+|...|.+++|++++.++++++.|| .|++||+.+
T Consensus 269 ~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~sg~~dg-~i~vwd~~~ 341 (464)
T 3v7d_B 269 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCL------YILSGHTDRIYSTIYDHERKRCISASMDT-TIRIWDLEN 341 (464)
T ss_dssp CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEE------EEECCCSSCEEEEEEETTTTEEEEEETTS-CEEEEETTT
T ss_pred ccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE------EEecCCCCCEEEEEEcCCCCEEEEEeCCC-cEEEEECCC
Confidence 56778888888899999999999999999999887 55678899999999999999999999997 999999999
Q ss_pred CeEEEEec-CCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1014 YNMVGSLP-TLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1014 ~~~~~~~~-~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
++++..+. |...|.++.++++++++|+.||.|++||+.++.....+. |...+..++|+++++++++|+ ||.|++||
T Consensus 342 ~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd 418 (464)
T 3v7d_B 342 GELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH--HTNLSAITTFYVSDNILVSGS-ENQFNIYN 418 (464)
T ss_dssp TEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEE--CTTCCCEEEEEECSSEEEEEE-TTEEEEEE
T ss_pred CcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeec--CCCCccEEEEEeCCCEEEEec-CCeEEEEE
Confidence 99999997 788999999999999999999999999999988777663 666788899999999999998 99999999
Q ss_pred CC
Q 001349 1093 LS 1094 (1094)
Q Consensus 1093 ls 1094 (1094)
+.
T Consensus 419 ~~ 420 (464)
T 3v7d_B 419 LR 420 (464)
T ss_dssp TT
T ss_pred CC
Confidence 73
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-30 Score=303.99 Aligned_cols=299 Identities=14% Similarity=0.137 Sum_probs=244.5
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCCcc--eeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecc
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHREL--VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIRE 853 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~~~--~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~ 853 (1094)
...+++++.++++++.||.|++||.... ...+..| ..+....|+++ +|++|+.||.|++||+.++ .....+.+
T Consensus 61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~ 137 (420)
T 3vl1_A 61 GNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN--LQREIDQA 137 (420)
T ss_dssp TCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC--EEEEETTS
T ss_pred ceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc--ceeeeccc
Confidence 4668889999999999999999999843 2333344 33444466765 9999999999999999988 77888889
Q ss_pred cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEc
Q 001349 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN 933 (1094)
Q Consensus 854 H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~ 933 (1094)
|.+.|++++|+|++++|++|+.||+|++||+.+++.. .....+...|.++. |+|+++.+++++.++.+++|+
T Consensus 138 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~h~~~v~~~~-------~~~~~~~l~s~~~d~~v~iwd 209 (420)
T 3vl1_A 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP-RTLIGHRATVTDIA-------IIDRGRNVLSASLDGTIRLWE 209 (420)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCC-EEEECCSSCEEEEE-------EETTTTEEEEEETTSCEEEEE
T ss_pred ccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCc-eEEcCCCCcEEEEE-------EcCCCCEEEEEcCCCcEEEeE
Confidence 9999999999999999999999999999999987632 22345678899888 999999999999999999998
Q ss_pred CC---------------CCceEEEE---------------------eC--CEEEEEEcCCeEEEEECCCCceeEEeccce
Q 001349 934 SS---------------KYPKCLAL---------------------VQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHR 975 (1094)
Q Consensus 934 ~~---------------~~v~~l~~---------------------s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~ 975 (1094)
.. ..+.++.+ ++ ..+++|+.||.|++||++++.....
T Consensus 210 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~----- 284 (420)
T 3vl1_A 210 CGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQ----- 284 (420)
T ss_dssp TTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEE-----
T ss_pred CCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEE-----
Confidence 53 23444444 22 3699999999999999999887643
Q ss_pred eecCCCCCeEEEEEeCCcc-EEEEEECCCCEEEEEECCCCeE-EEEec--CCCCEEEEEEeCC-EEEEEEcCCeEEEEEC
Q 001349 976 KLLGKANPVHALQVHNGLV-YTASTSLDGAAVKMWSTSNYNM-VGSLP--TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQ 1050 (1094)
Q Consensus 976 ~~~~h~~~V~sl~fs~~~~-~las~s~Dg~~I~iwd~~~~~~-~~~~~--~~~~v~~l~~spd-~l~sgs~dg~I~vwd~ 1050 (1094)
...+|...|++++|+|++. ++++++.|| .|++||++++.. +..+. +...+.++.+.++ ++++++.||.|++||+
T Consensus 285 ~~~~~~~~v~~~~~~~~~~~~l~~g~~dg-~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~ 363 (420)
T 3vl1_A 285 LPSKFTCSCNSLTVDGNNANYIYAGYENG-MLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDII 363 (420)
T ss_dssp ECCTTSSCEEEEEECSSCTTEEEEEETTS-EEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEE
T ss_pred cccccCCCceeEEEeCCCCCEEEEEeCCC-eEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEec
Confidence 2346788999999999998 999999987 999999998743 55555 5678888887766 8999999999999998
Q ss_pred CCCc---------EEEEecccCCcceEEEEEcCCCC---EEEEEeCCCcEEEEeCC
Q 001349 1051 KRQI---------RIETLQTGTSGKVQCMALDDNEE---FLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1051 ~t~~---------~~~~l~~~h~~~I~~l~~Spdg~---~L~sgs~DG~I~iWdls 1094 (1094)
.... ....+ .+|.+.|.+++|+|+++ .+++++.+|.+.+|+++
T Consensus 364 ~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 364 SDPESERPAIEFETPTFL-VSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp CCTTCCSCEECTTSCEEE-CCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred cCCCCCccceeccCccEE-ccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 7631 12233 46888999999999999 78888899999999974
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-30 Score=302.11 Aligned_cols=274 Identities=16% Similarity=0.176 Sum_probs=235.3
Q ss_pred eeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCc----ceeEEEecccCCCeEEEEEecC----C---CEEEEEe
Q 001349 806 VHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSI----LHLIQQIREHTKAVTGLAILQS----G---EMLYSGS 874 (1094)
Q Consensus 806 ~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~----~~~~~~l~~H~~~V~sv~fspd----g---~~LaSgs 874 (1094)
...+.+|.+.|++++|+|++|++|+.||+|++||+.++. ...+..+.+|...|++++|+|+ | ++|++++
T Consensus 9 ~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~ 88 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS 88 (397)
T ss_dssp EEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred hhhhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEc
Confidence 456789999999999999999999999999999999883 2368888899999999999999 9 9999999
Q ss_pred CCCcEEEEECCCCce----EEEEeccc-----CccceeeeecCceEEEe----eCCCe-EEEEEeCCeEEEEcCCC----
Q 001349 875 LDKTARVWSIGNEEI----HCVQVHDI-----KDQIQNLAVSNSILCFI----PQGAG-IKVHLRNGKTKLLNSSK---- 936 (1094)
Q Consensus 875 ~DgtI~vWdi~~~~~----~~~~~~~~-----~~~V~~v~~~~~~~~fs----pdg~~-l~~~~~~g~i~l~~~~~---- 936 (1094)
.||+|++||+.+++. .......+ ...|.++. |+ |++.. +++++.+|.+++|+...
T Consensus 89 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 161 (397)
T 1sq9_A 89 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK-------WGASNDRLLSHRLVATDVKGTTYIWKFHPFADE 161 (397)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEE-------EECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred CCCCEEEEEccCCcccccccceeecccccccCCCcEEEEE-------EeeccCCCCceEEEEEeCCCcEEEEeCCccccc
Confidence 999999999988762 02222333 47788887 89 99999 99999999999987432
Q ss_pred --------------------------CceEEEEeCC-EEEEEEcCCeEEEEECCCCceeEEeccceeecC---C---CCC
Q 001349 937 --------------------------YPKCLALVQG-KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLG---K---ANP 983 (1094)
Q Consensus 937 --------------------------~v~~l~~s~~-~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~---h---~~~ 983 (1094)
.+.++.|+++ .+++|+.||.|++||+++++.. ..+.. | ...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~h~~~~~~ 235 (397)
T 1sq9_A 162 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPL------YNFESQHSMINNSNS 235 (397)
T ss_dssp HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEE------EEEECCC---CCCCC
T ss_pred cccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCcee------EEEeccccccccCCc
Confidence 3667888753 8899999999999999998877 34555 7 889
Q ss_pred eEEEEEeCCccEEEEEECC---CCEEEEEECCCCeEEEEec--------------CCCCEEEEEEeCC--EEEEEEcCCe
Q 001349 984 VHALQVHNGLVYTASTSLD---GAAVKMWSTSNYNMVGSLP--------------TLSEVRAMVVSSE--LVYLGCKGGT 1044 (1094)
Q Consensus 984 V~sl~fs~~~~~las~s~D---g~~I~iwd~~~~~~~~~~~--------------~~~~v~~l~~spd--~l~sgs~dg~ 1044 (1094)
|.+++|+|++.++++++.| | .|++||+++++.+..+. |...|.+++|+|+ ++++|+.||.
T Consensus 236 i~~i~~~~~~~~l~~~~~d~~~g-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 314 (397)
T 1sq9_A 236 IRSVKFSPQGSLLAIAHDSNSFG-CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK 314 (397)
T ss_dssp EEEEEECSSTTEEEEEEEETTEE-EEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSE
T ss_pred cceEEECCCCCEEEEEecCCCCc-eEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCe
Confidence 9999999999999999988 7 99999999999888886 5788999999988 8999999999
Q ss_pred EEEEECCCCcEEEEecc-----cC---------------CcceEEEEEcCCC----------CEEEEEeCCCcEEEEeC
Q 001349 1045 VEIWDQKRQIRIETLQT-----GT---------------SGKVQCMALDDNE----------EFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1045 I~vwd~~t~~~~~~l~~-----~h---------------~~~I~~l~~Spdg----------~~L~sgs~DG~I~iWdl 1093 (1094)
|++||+.+++.+..+.. +| ...|++++|+|+| ++|++|+.||.|++|++
T Consensus 315 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~ 393 (397)
T 1sq9_A 315 LRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 393 (397)
T ss_dssp EEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred EEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEc
Confidence 99999999999999841 56 8899999999998 79999999999999997
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-30 Score=300.25 Aligned_cols=278 Identities=14% Similarity=0.120 Sum_probs=228.8
Q ss_pred hccccccccccCcEEEEeeCCCCeEEEeCCc----ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCccee
Q 001349 774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHRE----LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHL 847 (1094)
Q Consensus 774 ~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~----~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~ 847 (1094)
..+....+.+++.++++++.|+.|++||... ....+.+|.+.|++++|+|+ +|++|+.||+|++||+.++....
T Consensus 9 ~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 88 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP 88 (372)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeee
Confidence 3455667788999999999999999999873 56778899999999999986 99999999999999999885444
Q ss_pred EEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCce---EEEEecccCccceeeeecCceEEEeeCCCeEEEEE
Q 001349 848 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEI---HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHL 924 (1094)
Q Consensus 848 ~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~---~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~ 924 (1094)
...+..|...|++++|+|++++|++++.||.|++||++.+.. .......+...|.++. |+|+++
T Consensus 89 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~-------~~~~~~------ 155 (372)
T 1k8k_C 89 TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLD-------WHPNSV------ 155 (372)
T ss_dssp EEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEE-------ECTTSS------
T ss_pred eEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEE-------EcCCCC------
Confidence 555678999999999999999999999999999999988752 1122234456666666 666665
Q ss_pred eCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECC------------------CCceeEEeccceeecCCCCCeEE
Q 001349 925 RNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA------------------TGTFATIQTGHRKLLGKANPVHA 986 (1094)
Q Consensus 925 ~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~------------------~~~~~~~~~~~~~~~~h~~~V~s 986 (1094)
.+++|+.||.|++||+. ++... ..+.+|...|.+
T Consensus 156 ----------------------~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~ 207 (372)
T 1k8k_C 156 ----------------------LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELM------FESSSSCGWVHG 207 (372)
T ss_dssp ----------------------EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEE------EECCCCSSCEEE
T ss_pred ----------------------EEEEEcCCCCEEEEEcccccccccccccccccccchhhhe------EecCCCCCeEEE
Confidence 48889999999999964 44544 455688899999
Q ss_pred EEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC-EEEEEEcCCeEEEEECCC--Cc--------
Q 001349 987 LQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKR--QI-------- 1054 (1094)
Q Consensus 987 l~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t--~~-------- 1054 (1094)
++|+|++.++++++.|+ .|++||+++++++..+. |...+.+++|+|+ .+++++.||.|++||+.+ ++
T Consensus 208 ~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~ 286 (372)
T 1k8k_C 208 VCFSANGSRVAWVSHDS-TVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLD 286 (372)
T ss_dssp EEECSSSSEEEEEETTT-EEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCC
T ss_pred EEECCCCCEEEEEeCCC-EEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccC
Confidence 99999999999999997 99999999999998888 6678999999998 444444999999999987 42
Q ss_pred ------------------------EE------EEecccCCcceEEEEEc-CCC---CEEEEEeCCCcEEEEeC
Q 001349 1055 ------------------------RI------ETLQTGTSGKVQCMALD-DNE---EFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1055 ------------------------~~------~~l~~~h~~~I~~l~~S-pdg---~~L~sgs~DG~I~iWdl 1093 (1094)
.. ..+..+|.+.|++++|+ ++| ++|++|+.||+|++||+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~ 359 (372)
T 1k8k_C 287 VPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 359 (372)
T ss_dssp CC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred ccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEe
Confidence 10 33335899999999966 676 99999999999999996
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-30 Score=291.14 Aligned_cols=247 Identities=16% Similarity=0.208 Sum_probs=201.4
Q ss_pred eecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEec--CCCEEEEEeCCCcEEEE
Q 001349 807 HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ--SGEMLYSGSLDKTARVW 882 (1094)
Q Consensus 807 ~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fsp--dg~~LaSgs~DgtI~vW 882 (1094)
.++.+|.+.|++++|+|+ +|++|+.||+|+|||+.++....+.++.+|.+.|++++|++ +|++|+||+.||+|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 457799999999999996 99999999999999998654467889999999999999986 48999999999999999
Q ss_pred ECCCCceEE-EEecccCccceeeeecCceEEEeeC--CCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEE
Q 001349 883 SIGNEEIHC-VQVHDIKDQIQNLAVSNSILCFIPQ--GAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQE 959 (1094)
Q Consensus 883 di~~~~~~~-~~~~~~~~~V~~v~~~~~~~~fspd--g~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~i 959 (1094)
|+.++.... .....+...|.++. |+|+ |. .+++|+.||.|++
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~-------~~p~~~g~----------------------------~l~s~s~d~~v~~ 127 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQ-------WAPHEYGP----------------------------MLLVASSDGKVSV 127 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEE-------ECCGGGCS----------------------------EEEEEETTSEEEE
T ss_pred EcCCCceEEEEEeecCCCceeEEE-------eCcCCCCc----------------------------EEEEEECCCcEEE
Confidence 998864222 12223455566665 5554 33 4889999999999
Q ss_pred EECCCCceeEEeccceeecCCCCCeEEEEEeCC-------------ccEEEEEECCCCEEEEEECCCCe----EEEEec-
Q 001349 960 IDLATGTFATIQTGHRKLLGKANPVHALQVHNG-------------LVYTASTSLDGAAVKMWSTSNYN----MVGSLP- 1021 (1094)
Q Consensus 960 wDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~-------------~~~las~s~Dg~~I~iwd~~~~~----~~~~~~- 1021 (1094)
||++++.... ...+.+|...|.+++|+|+ +.++++++.|+ +|++||++++. ....+.
T Consensus 128 wd~~~~~~~~----~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~-~v~lwd~~~~~~~~~~~~~l~~ 202 (297)
T 2pm7_B 128 VEFKENGTTS----PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN-LVKIWKYNSDAQTYVLESTLEG 202 (297)
T ss_dssp EEBCSSSCBC----CEEEECCSSCEEEEEECCCC------------CCEEEEEETTS-CEEEEEEETTTTEEEEEEEECC
T ss_pred EEecCCCcee----eeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCC-cEEEEEEcCCCceEEEEEEecC
Confidence 9998764221 1356789999999999986 46899999997 99999998765 555666
Q ss_pred CCCCEEEEEEeCC-----EEEEEEcCCeEEEEECCCCc---EEEEec-ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1022 TLSEVRAMVVSSE-----LVYLGCKGGTVEIWDQKRQI---RIETLQ-TGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1022 ~~~~v~~l~~spd-----~l~sgs~dg~I~vwd~~t~~---~~~~l~-~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
|...|.+++|+|+ ++++|+.|++|+|||+.++. ....+. .+|...|++++|+|+|++|++++.||+|++|+
T Consensus 203 H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 203 HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (297)
T ss_dssp CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred CCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 7789999999995 79999999999999988743 122221 36788999999999999999999999999998
Q ss_pred C
Q 001349 1093 L 1093 (1094)
Q Consensus 1093 l 1093 (1094)
.
T Consensus 283 ~ 283 (297)
T 2pm7_B 283 E 283 (297)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.98 E-value=6.1e-30 Score=314.88 Aligned_cols=307 Identities=14% Similarity=0.166 Sum_probs=249.0
Q ss_pred ccccccccccCcEEEEeeCC----CCeEEEeCCcceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCccee
Q 001349 775 LRKYSPLAFEMVKVLSNGHD----SSADFWNHRELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHL 847 (1094)
Q Consensus 775 ~~~~~~~~~d~~~l~s~s~d----g~I~vWd~~~~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~ 847 (1094)
.+....+.+++.++++++.+ +.|.+||.......+.+|.+.|++++|+|+ .+++|+.||+|++||..++ +.
T Consensus 118 ~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~--~~ 195 (615)
T 1pgu_A 118 PISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF--KF 195 (615)
T ss_dssp CEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB--EE
T ss_pred cEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc--ce
Confidence 34456678899999999988 799999987888888999999999999996 8999999999999999988 78
Q ss_pred EEEecccCC---CeEEEEEecC-CCEEEEEeCCCcEEEEECCCCceEEEEec---ccCccceeeeecCceEEEeeCCCeE
Q 001349 848 IQQIREHTK---AVTGLAILQS-GEMLYSGSLDKTARVWSIGNEEIHCVQVH---DIKDQIQNLAVSNSILCFIPQGAGI 920 (1094)
Q Consensus 848 ~~~l~~H~~---~V~sv~fspd-g~~LaSgs~DgtI~vWdi~~~~~~~~~~~---~~~~~V~~v~~~~~~~~fspdg~~l 920 (1094)
+..+.+|.. .|++++|+|+ +++|++++.||+|++||+.+++....... .+...|.++. |+ ++..+
T Consensus 196 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~-------~~-~~~~l 267 (615)
T 1pgu_A 196 SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALS-------WL-DSQKF 267 (615)
T ss_dssp EEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEE-------ES-SSSEE
T ss_pred eeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEE-------Ec-CCCEE
Confidence 899999999 9999999999 99999999999999999998863333213 6778888887 77 77777
Q ss_pred EEEEeCCeEEEEcCC----------------CCceEEEE-eCCEEEEEEcCCeEEEEECCCCceeEEe------------
Q 001349 921 KVHLRNGKTKLLNSS----------------KYPKCLAL-VQGKVYCGCQDGAIQEIDLATGTFATIQ------------ 971 (1094)
Q Consensus 921 ~~~~~~g~i~l~~~~----------------~~v~~l~~-s~~~l~sgs~Dg~I~iwDl~~~~~~~~~------------ 971 (1094)
+++..++.+++|+.. ..+.++.+ .++.+++|+.||.|++||+.+++....+
T Consensus 268 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 347 (615)
T 1pgu_A 268 ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV 347 (615)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe
Confidence 777777777777742 12223333 2234555555555555554322111000
Q ss_pred --------------------------------------------------------------------------------
Q 001349 972 -------------------------------------------------------------------------------- 971 (1094)
Q Consensus 972 -------------------------------------------------------------------------------- 971 (1094)
T Consensus 348 ~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 427 (615)
T 1pgu_A 348 NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDD 427 (615)
T ss_dssp TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTS
T ss_pred cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCC
Confidence
Q ss_pred --------------------------------------cc-----------c--eeecCCCCCeEEEEEeCCccEEEEEE
Q 001349 972 --------------------------------------TG-----------H--RKLLGKANPVHALQVHNGLVYTASTS 1000 (1094)
Q Consensus 972 --------------------------------------~~-----------~--~~~~~h~~~V~sl~fs~~~~~las~s 1000 (1094)
.+ . ..+.+|...|++++|+|++.++++++
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 507 (615)
T 1pgu_A 428 DLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGD 507 (615)
T ss_dssp EEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEE
T ss_pred ceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcC
Confidence 00 0 23456888999999999999999999
Q ss_pred CCCCEEEEEECCCCeEEEEec--CCCCEEEEEEeC----------C--EEEEEEcCCeEEEEECCCC-cEEEEecccCCc
Q 001349 1001 LDGAAVKMWSTSNYNMVGSLP--TLSEVRAMVVSS----------E--LVYLGCKGGTVEIWDQKRQ-IRIETLQTGTSG 1065 (1094)
Q Consensus 1001 ~Dg~~I~iwd~~~~~~~~~~~--~~~~v~~l~~sp----------d--~l~sgs~dg~I~vwd~~t~-~~~~~l~~~h~~ 1065 (1094)
.|| .|++||+.+++.+..+. |...|++++|+| + ++++|+.||.|++||+.++ +++..+ .+|.+
T Consensus 508 ~dg-~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~h~~ 585 (615)
T 1pgu_A 508 VMG-KILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL-NAHKD 585 (615)
T ss_dssp TTS-CEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET-TSSTT
T ss_pred CCC-eEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhh-hcCcc
Confidence 997 99999999999998887 788999999999 7 8999999999999999998 677777 68999
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1066 KVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1066 ~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
.|++++|+|+++ |++++.||+|++|++.
T Consensus 586 ~v~~l~~s~~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 586 GVNNLLWETPST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp CEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred ceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence 999999999999 9999999999999974
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.98 E-value=4.9e-31 Score=312.13 Aligned_cols=275 Identities=15% Similarity=0.126 Sum_probs=223.4
Q ss_pred ecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEec-CCCEEEEEeCCCcEEEEE
Q 001349 808 VDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWS 883 (1094)
Q Consensus 808 ~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWd 883 (1094)
...+|...|+|++|+|. +||+|+.||+|+|||+.++.......+.+|.+.|++|+|+| ++++|+|||.||+|++||
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd 193 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD 193 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence 44578899999999983 89999999999999998876566677789999999999998 789999999999999999
Q ss_pred CCCCceEEEEec-ccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC-----------CCCceEEEEeC---CEE
Q 001349 884 IGNEEIHCVQVH-DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS-----------SKYPKCLALVQ---GKV 948 (1094)
Q Consensus 884 i~~~~~~~~~~~-~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~-----------~~~v~~l~~s~---~~l 948 (1094)
++++....+... .....+.++. |+|++..+++++.+|.+++|+. ...|.++.|++ ..+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~ 266 (435)
T 4e54_B 194 FKGNILRVFASSDTINIWFCSLD-------VSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFL 266 (435)
T ss_dssp TTSCEEEEEECCSSCSCCCCCEE-------EETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEE
T ss_pred ccCCceeEEeccCCCCccEEEEE-------ECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEE
Confidence 998754443332 2334455665 9999999999999999999984 45789999985 358
Q ss_pred EEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CC----
Q 001349 949 YCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TL---- 1023 (1094)
Q Consensus 949 ~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~---- 1023 (1094)
++|+.|+.|++||++++.....+ ....+|...|++++|+|++.++++++.|| +|++||+.++.....+. |.
T Consensus 267 ~s~s~d~~v~iwd~~~~~~~~~~---~~~~~h~~~v~~~~~spdg~~l~s~~~D~-~i~iwd~~~~~~~~~~~~~~~~~~ 342 (435)
T 4e54_B 267 ATASVDQTVKIWDLRQVRGKASF---LYSLPHRHPVNAACFSPDGARLLTTDQKS-EIRVYSASQWDCPLGLIPHPHRHF 342 (435)
T ss_dssp EEEETTSBCCEEETTTCCSSSCC---SBCCBCSSCEEECCBCTTSSEEEEEESSS-CEEEEESSSSSSEEEECCCCCCCC
T ss_pred EEecCcceeeEEecccccccceE---EEeeeccccccceeECCCCCeeEEEcCCC-EEEEEECCCCccceEEeccccccc
Confidence 89999999999999987654221 23357899999999999999999999997 99999999988776654 21
Q ss_pred --CCEEEEEEeCC--EEEEEE------------cCCeEEEEECCCCcEEEEecccCCcceEEE-EEcCCCCEEEEEeCCC
Q 001349 1024 --SEVRAMVVSSE--LVYLGC------------KGGTVEIWDQKRQIRIETLQTGTSGKVQCM-ALDDNEEFLVIGTSDG 1086 (1094)
Q Consensus 1024 --~~v~~l~~spd--~l~sgs------------~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l-~~Spdg~~L~sgs~DG 1086 (1094)
..+....|+|+ .+++++ .++.|++||..+++.+..+..+|...|.++ +|+|+|++|++|+ |+
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~ 421 (435)
T 4e54_B 343 QHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GY 421 (435)
T ss_dssp SSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SS
T ss_pred ccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CC
Confidence 12334456655 444443 346899999999999999877888889887 6999999999876 88
Q ss_pred cEEEEeCC
Q 001349 1087 RIQAWGLS 1094 (1094)
Q Consensus 1087 ~I~iWdls 1094 (1094)
+|+||++.
T Consensus 422 ~i~iW~~~ 429 (435)
T 4e54_B 422 HILIWSQQ 429 (435)
T ss_dssp EEEECCCC
T ss_pred cEEEEECC
Confidence 99999974
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.98 E-value=7.7e-30 Score=300.34 Aligned_cols=270 Identities=15% Similarity=0.264 Sum_probs=221.3
Q ss_pred ccccccCcEEEEeeCCCCeEEEeCCc--ceee--cccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEec
Q 001349 779 SPLAFEMVKVLSNGHDSSADFWNHRE--LVHV--DSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIR 852 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~dg~I~vWd~~~--~~~~--~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~ 852 (1094)
..++. .+.|++| .|++|+|||..+ .... ..+|.+.|++|+|+|+ +|++|+.||+|+|||+.++ +.+..+.
T Consensus 111 l~wS~-~n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~--~~~~~~~ 186 (420)
T 4gga_A 111 VDWSS-GNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ--KRLRNMT 186 (420)
T ss_dssp EEECT-TSEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEEC
T ss_pred EEECC-CCEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC--cEEEEEe
Confidence 33443 3456655 599999999873 3333 3468889999999997 9999999999999999999 8899999
Q ss_pred ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEE
Q 001349 853 EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLL 932 (1094)
Q Consensus 853 ~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~ 932 (1094)
+|...|.++.+ ++.+|++|+.|+++++||.............+...+..+. ++|+|.
T Consensus 187 ~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~-------~~~~g~-------------- 243 (420)
T 4gga_A 187 SHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR-------WAPDGR-------------- 243 (420)
T ss_dssp CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE-------ECTTSS--------------
T ss_pred CCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeee-------ecCCCC--------------
Confidence 99999998877 4689999999999999999886544444445566666665 666666
Q ss_pred cCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCc-cEEEE--EECCCCEEEEE
Q 001349 933 NSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL-VYTAS--TSLDGAAVKMW 1009 (1094)
Q Consensus 933 ~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~-~~las--~s~Dg~~I~iw 1009 (1094)
.+++++.||.|++||..+++..... ......|...|.+++|+|++ .++++ ++.|+ +|++|
T Consensus 244 --------------~l~s~~~D~~v~i~~~~~~~~~~~~--~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~-~I~iw 306 (420)
T 4gga_A 244 --------------HLASGGNDNLVNVWPSAPGEGGWVP--LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR-HIRIW 306 (420)
T ss_dssp --------------EEEEEETTSCEEEEESSCCSSCSCC--SEEECCCSSCEEEEEECTTCTTEEEEEECTTTC-EEEEE
T ss_pred --------------eeeeeeccccceEEeecccccccee--eeeecccCCceeeeeeCCCcccEEEEEeecCCC-EEEEE
Confidence 4888999999999999887643211 14566788999999999754 34444 34564 99999
Q ss_pred ECCCCeEEEEecCCCCEEEEEEeCC--EEEEEE--cCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCC
Q 001349 1010 STSNYNMVGSLPTLSEVRAMVVSSE--LVYLGC--KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSD 1085 (1094)
Q Consensus 1010 d~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs--~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~D 1085 (1094)
|+.++.+...+.++..+.++.|+++ .+++++ .||.|+|||+.+++++..+ .+|.+.|++++|+|||++|+||+.|
T Consensus 307 d~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l-~gH~~~V~~l~~spdg~~l~S~s~D 385 (420)
T 4gga_A 307 NVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL-KGHTSRVLSLTMSPDGATVASAAAD 385 (420)
T ss_dssp ETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSCEEEEETT
T ss_pred eCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEE-cCCCCCEEEEEEcCCCCEEEEEecC
Confidence 9999999999999999999999998 566554 7899999999999999999 5999999999999999999999999
Q ss_pred CcEEEEeC
Q 001349 1086 GRIQAWGL 1093 (1094)
Q Consensus 1086 G~I~iWdl 1093 (1094)
|+|+|||+
T Consensus 386 ~tvriWdv 393 (420)
T 4gga_A 386 ETLRLWRC 393 (420)
T ss_dssp TEEEEECC
T ss_pred CeEEEEEC
Confidence 99999997
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.98 E-value=6.1e-30 Score=299.20 Aligned_cols=270 Identities=16% Similarity=0.239 Sum_probs=227.1
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCCc--ceeecc-cCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEec
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDS-SENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIR 852 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~~--~~~~~~-~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~ 852 (1094)
...+.+++..+++++.|+.|++||... ...... .|.+.|++++|+|+ +|++|+.||.|++||+.++ ..+..+.
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~ 173 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ--TKLRTMA 173 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEEEEC
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC--eEEEEec
Confidence 344666678899999999999999873 333333 48999999999996 9999999999999999998 7888999
Q ss_pred ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEE
Q 001349 853 EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLL 932 (1094)
Q Consensus 853 ~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~ 932 (1094)
+|...|.+++| +++++++|+.||+|++||++...........+...|.++. |+|++.
T Consensus 174 ~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~-------------- 230 (401)
T 4aez_A 174 GHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLA-------WRSDGL-------------- 230 (401)
T ss_dssp CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE-------ECTTSS--------------
T ss_pred CCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEE-------EcCCCC--------------
Confidence 99999999999 5679999999999999999865433444445666777776 777665
Q ss_pred cCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCc-cEEEEEE--CCCCEEEEE
Q 001349 933 NSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL-VYTASTS--LDGAAVKMW 1009 (1094)
Q Consensus 933 ~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~-~~las~s--~Dg~~I~iw 1009 (1094)
.+++|+.||.|++||++++... ..+.+|...|.+++|+|++ .++++++ .|+ .|++|
T Consensus 231 --------------~l~s~~~d~~v~iwd~~~~~~~------~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~-~i~i~ 289 (401)
T 4aez_A 231 --------------QLASGGNDNVVQIWDARSSIPK------FTKTNHNAAVKAVAWCPWQSNLLATGGGTMDK-QIHFW 289 (401)
T ss_dssp --------------EEEEEETTSCEEEEETTCSSEE------EEECCCSSCCCEEEECTTSTTEEEEECCTTTC-EEEEE
T ss_pred --------------EEEEEeCCCeEEEccCCCCCcc------EEecCCcceEEEEEECCCCCCEEEEecCCCCC-EEEEE
Confidence 4889999999999999998876 4566788999999999965 5556654 565 99999
Q ss_pred ECCCCeEEEEecCCCCEEEEEEeCC--EEEE--EEcCCeEEEEECCCCcEEEE--ecccCCcceEEEEEcCCCCEEEEEe
Q 001349 1010 STSNYNMVGSLPTLSEVRAMVVSSE--LVYL--GCKGGTVEIWDQKRQIRIET--LQTGTSGKVQCMALDDNEEFLVIGT 1083 (1094)
Q Consensus 1010 d~~~~~~~~~~~~~~~v~~l~~spd--~l~s--gs~dg~I~vwd~~t~~~~~~--l~~~h~~~I~~l~~Spdg~~L~sgs 1083 (1094)
|+.+++++..+.++..+.+++|+|+ ++++ |+.||.|++||+.+++.... + .+|.+.|++++|+|+|++|++++
T Consensus 290 d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~-~~h~~~v~~~~~s~dg~~l~s~~ 368 (401)
T 4aez_A 290 NAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI-PAHDTRVLYSALSPDGRILSTAA 368 (401)
T ss_dssp ETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEE-ECCSSCCCEEEECTTSSEEEEEC
T ss_pred ECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEe-cCCCCCEEEEEECCCCCEEEEEe
Confidence 9999999999999999999999998 6777 44899999999998765544 4 48999999999999999999999
Q ss_pred CCCcEEEEeCC
Q 001349 1084 SDGRIQAWGLS 1094 (1094)
Q Consensus 1084 ~DG~I~iWdls 1094 (1094)
.||+|++|++.
T Consensus 369 ~dg~i~iw~~~ 379 (401)
T 4aez_A 369 SDENLKFWRVY 379 (401)
T ss_dssp TTSEEEEEECC
T ss_pred CCCcEEEEECC
Confidence 99999999973
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-30 Score=331.57 Aligned_cols=314 Identities=10% Similarity=0.105 Sum_probs=229.9
Q ss_pred ccccccccccCcEEEEeeCCCCeEEEeCCccee-ecccCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEec
Q 001349 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHRELVH-VDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIR 852 (1094)
Q Consensus 775 ~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~~~-~~~~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~ 852 (1094)
.+....|++++.++|+|+.||+|++|+...... ....|.+.|.+++|+|+ +|++++.|++|++||+.++ +++..+.
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~--~~~~~~~ 96 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQ--KVLTTVF 96 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTC--SEEEEEE
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCC--cEEEEEc
Confidence 445677888999999999999999999874332 23458899999999997 8999999999999999998 6777775
Q ss_pred ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEe----------cccCccceeeeecCc-------------
Q 001349 853 EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQV----------HDIKDQIQNLAVSNS------------- 909 (1094)
Q Consensus 853 ~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~----------~~~~~~V~~v~~~~~------------- 909 (1094)
|.+.|++++|+|++++|++|+.||+|++||+.++....... ..|..+|.++++++.
T Consensus 97 -~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~ 175 (902)
T 2oaj_A 97 -VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVT 175 (902)
T ss_dssp -CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCE
T ss_pred -CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCc
Confidence 77899999999999999999999999999999876422111 224455666554331
Q ss_pred ----------------------------------------eEEEeeCCCeEEEEEeCCeEEEEcCC--------------
Q 001349 910 ----------------------------------------ILCFIPQGAGIKVHLRNGKTKLLNSS-------------- 935 (1094)
Q Consensus 910 ----------------------------------------~~~fspdg~~l~~~~~~g~i~l~~~~-------------- 935 (1094)
.++|+|+|..+++++.||.+++|+..
T Consensus 176 vlWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~ 255 (902)
T 2oaj_A 176 LTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETE 255 (902)
T ss_dssp EEEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSC
T ss_pred EEEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccc
Confidence 24578888888888888888888641
Q ss_pred ----------------CCceEEEEe----CC---EEEEEEcC-----CeEEEEE--------------------------
Q 001349 936 ----------------KYPKCLALV----QG---KVYCGCQD-----GAIQEID-------------------------- 961 (1094)
Q Consensus 936 ----------------~~v~~l~~s----~~---~l~sgs~D-----g~I~iwD-------------------------- 961 (1094)
..|.+++|. ++ .+++|+.| +.+.+|+
T Consensus 256 ~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 335 (902)
T 2oaj_A 256 INVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMK 335 (902)
T ss_dssp TTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEE
T ss_pred cCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceE
Confidence 125566663 21 24444333 1444444
Q ss_pred ---------------------------------------------CCCCceeEE-e------------------------
Q 001349 962 ---------------------------------------------LATGTFATI-Q------------------------ 971 (1094)
Q Consensus 962 ---------------------------------------------l~~~~~~~~-~------------------------ 971 (1094)
+.+|..... .
T Consensus 336 ~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~ 415 (902)
T 2oaj_A 336 IFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNK 415 (902)
T ss_dssp EECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHH
T ss_pred EEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHH
Confidence 222211100 0
Q ss_pred ----------ccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEE----EE--e------cCCCCEEEE
Q 001349 972 ----------TGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMV----GS--L------PTLSEVRAM 1029 (1094)
Q Consensus 972 ----------~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~----~~--~------~~~~~v~~l 1029 (1094)
.....+.+|...+.+++|+|++.++++++.|+ +|++||+.++... .. + .|...|.++
T Consensus 416 ~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~Dg-tVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~sv 494 (902)
T 2oaj_A 416 LWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNG-SVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKI 494 (902)
T ss_dssp HHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTS-EEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEE
T ss_pred HHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCC-cEEEEECCCccccCCceEEeechhhcCCCCCCceeEE
Confidence 00001122333344445578899999999997 9999999876421 11 1 366789999
Q ss_pred EEeCC--EEEEEEcCCeEEEEECCCCc---------------------------------------------EEEEeccc
Q 001349 1030 VVSSE--LVYLGCKGGTVEIWDQKRQI---------------------------------------------RIETLQTG 1062 (1094)
Q Consensus 1030 ~~spd--~l~sgs~dg~I~vwd~~t~~---------------------------------------------~~~~l~~~ 1062 (1094)
+|+|| ++++|+.||+|+|||+.+++ ++..+ .+
T Consensus 495 afspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l-~~ 573 (902)
T 2oaj_A 495 SFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAV-HA 573 (902)
T ss_dssp EEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEE-CC
T ss_pred EecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEE-Ec
Confidence 99999 99999999999999987662 35666 57
Q ss_pred CCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1063 TSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1063 h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
|.+.|++++||||| +|++|+.||+|++||+.
T Consensus 574 h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~ 604 (902)
T 2oaj_A 574 NKGKTSAINNSNIG-FVGIAYAAGSLMLIDRR 604 (902)
T ss_dssp CSCSEEEEEECBTS-EEEEEETTSEEEEEETT
T ss_pred CCCcEEEEEecCCc-EEEEEeCCCcEEEEECC
Confidence 99999999999999 99999999999999973
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-29 Score=280.07 Aligned_cols=268 Identities=16% Similarity=0.171 Sum_probs=229.5
Q ss_pred cceeecccCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 001349 804 ELVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVW 882 (1094)
Q Consensus 804 ~~~~~~~~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vW 882 (1094)
+....+.+|.+.|++++|..+ +|++|+.||+|++||+.++ .....+..|...|.+++|+|++++|++|+.||.|++|
T Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQ--WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp EEEEEECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSS--EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred HHHHHhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCC--EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 355678899999999999333 9999999999999999988 7788888999999999999999999999999999999
Q ss_pred ECCCCc--eEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEc----------CCCCceEEEEe---CCE
Q 001349 883 SIGNEE--IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN----------SSKYPKCLALV---QGK 947 (1094)
Q Consensus 883 di~~~~--~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~----------~~~~v~~l~~s---~~~ 947 (1094)
++.... ........+...|.++. | ++..+++++.+|.+++|+ +...+.++.+. ++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~-------~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~ 157 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLS-------F--QDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENK 157 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEE-------E--ETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTE
T ss_pred EeeecCCCCcccchhhcccCEEEEE-------e--cCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCE
Confidence 987653 12223345677777776 5 678899999999999997 34567788775 467
Q ss_pred EEEEEcCCeEEEEECCCCceeEEeccceeecC-CCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCC
Q 001349 948 VYCGCQDGAIQEIDLATGTFATIQTGHRKLLG-KANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSE 1025 (1094)
Q Consensus 948 l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~-h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~ 1025 (1094)
+++++.||.|++||. +... ..+.. |...+.+++|++++. +++++.|| .|++||+++++.+..+. |...
T Consensus 158 l~~~~~d~~i~i~d~--~~~~------~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~ 227 (313)
T 3odt_A 158 FLTASADKTIKLWQN--DKVI------KTFSGIHNDVVRHLAVVDDGH-FISCSNDG-LIKLVDMHTGDVLRTYEGHESF 227 (313)
T ss_dssp EEEEETTSCEEEEET--TEEE------EEECSSCSSCEEEEEEEETTE-EEEEETTS-EEEEEETTTCCEEEEEECCSSC
T ss_pred EEEEECCCCEEEEec--CceE------EEEeccCcccEEEEEEcCCCe-EEEccCCC-eEEEEECCchhhhhhhhcCCce
Confidence 999999999999993 3333 33444 888999999999998 78888886 99999999999999888 7889
Q ss_pred EEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1026 VRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1026 v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
|.+++|+|+ .+++|+.||.|++||+.+++.+..+ ..|...|++++|+|+++ +++++.||.|++||+.
T Consensus 228 i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 228 VYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVI-TLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQE 295 (313)
T ss_dssp EEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEE-ECSSSCEEEEEECTTSC-EEEEETTSCEEEEESC
T ss_pred EEEEEEecCCCEEEEecCCEEEEEECCCCceeEEE-eccCceEEEEEEccCCC-EEEEeCCCcEEEEeCC
Confidence 999999999 8999999999999999999999999 58888999999999998 6679999999999974
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-30 Score=298.20 Aligned_cols=274 Identities=12% Similarity=0.166 Sum_probs=216.2
Q ss_pred ccccccccccC-cEEEEeeCCCCeEEEeCC--cceeec--ccCCCcEEEEEEeC-C--EEEEEECCCeEEEEecCCCcce
Q 001349 775 LRKYSPLAFEM-VKVLSNGHDSSADFWNHR--ELVHVD--SSENGKVLSIACFR-D--KIFSGHSDGTIKVWTGRGSILH 846 (1094)
Q Consensus 775 ~~~~~~~~~d~-~~l~s~s~dg~I~vWd~~--~~~~~~--~~h~~~V~~l~fsp-d--~LaSgs~Dg~I~vWd~~t~~~~ 846 (1094)
.+....+.+++ .++++|+.||.|++||.. ...... .+|.+.|.+++|+| + +|++|+.||+|++||+.+....
T Consensus 75 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 154 (383)
T 3ei3_B 75 RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQ 154 (383)
T ss_dssp CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEE
T ss_pred CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceE
Confidence 34455677787 899999999999999997 333333 37999999999999 3 9999999999999999975322
Q ss_pred eEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeC
Q 001349 847 LIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRN 926 (1094)
Q Consensus 847 ~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~ 926 (1094)
.+....+|...|++++|+|++++|++|+.||+|++||++... ......+...|.++. |+|++..
T Consensus 155 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~h~~~v~~~~-------~~~~~~~------- 218 (383)
T 3ei3_B 155 VFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHE--IFKEKLHKAKVTHAE-------FNPRCDW------- 218 (383)
T ss_dssp EEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCE--EEEEECSSSCEEEEE-------ECSSCTT-------
T ss_pred EEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCE--EEEeccCCCcEEEEE-------ECCCCCC-------
Confidence 333334455889999999999999999999999999996432 222334566777776 7777662
Q ss_pred CeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCC----CceeEEeccceeecCCCCCeEEEEEeC-CccEEEEEEC
Q 001349 927 GKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT----GTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSL 1001 (1094)
Q Consensus 927 g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~----~~~~~~~~~~~~~~~h~~~V~sl~fs~-~~~~las~s~ 1001 (1094)
.+++|+.|+.|++||+++ +... ..+ +|...|++++|+| ++.++++++.
T Consensus 219 --------------------~l~s~~~d~~i~iwd~~~~~~~~~~~------~~~-~~~~~v~~~~~s~~~~~~l~~~~~ 271 (383)
T 3ei3_B 219 --------------------LMATSSVDATVKLWDLRNIKDKNSYI------AEM-PHEKPVNAAYFNPTDSTKLLTTDQ 271 (383)
T ss_dssp --------------------EEEEEETTSEEEEEEGGGCCSTTCEE------EEE-ECSSCEEEEEECTTTSCEEEEEES
T ss_pred --------------------EEEEEeCCCEEEEEeCCCCCcccceE------EEe-cCCCceEEEEEcCCCCCEEEEEcC
Confidence 388999999999999998 4443 222 6889999999999 9999999999
Q ss_pred CCCEEEEEECCCCeEEEEec-C-------C----------CCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEeccc
Q 001349 1002 DGAAVKMWSTSNYNMVGSLP-T-------L----------SEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTG 1062 (1094)
Q Consensus 1002 Dg~~I~iwd~~~~~~~~~~~-~-------~----------~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~~~ 1062 (1094)
|+ .|++||++++.....+. | . ..+..++++|+ .+ +|+.||.|++||+.+++.+..+...
T Consensus 272 d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~ 349 (383)
T 3ei3_B 272 RN-EIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDP 349 (383)
T ss_dssp SS-EEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBT
T ss_pred CC-cEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCC
Confidence 97 99999999877655544 1 1 23444556665 23 6778999999999999999999532
Q ss_pred -CCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1063 -TSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1063 -h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
|.+.+..++|+|++++|++|+ ||+|++||++
T Consensus 350 ~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~ 381 (383)
T 3ei3_B 350 NAAGIISLNKFSPTGDVLASGM-GFNILIWNRE 381 (383)
T ss_dssp TBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC
T ss_pred CCCceEEEEEEecCccEEEEec-CCcEEEEecC
Confidence 567788889999999999997 9999999984
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=325.67 Aligned_cols=312 Identities=13% Similarity=0.123 Sum_probs=241.1
Q ss_pred cccccccccCcEEEEeeCCCCeEEEeCCcce-------------eecccCCCcEEEEEEeCC---EEEEEECCCeEEEEe
Q 001349 776 RKYSPLAFEMVKVLSNGHDSSADFWNHRELV-------------HVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWT 839 (1094)
Q Consensus 776 ~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~~-------------~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd 839 (1094)
+....+.+++.++++|+.||+|++||..... ....+|.+.|++++|+|+ .+++|+.||+| +||
T Consensus 101 V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd 179 (902)
T 2oaj_A 101 ITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYS 179 (902)
T ss_dssp EEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEE
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEE
Confidence 3456677899999999999999999997432 234679999999999994 89999999999 999
Q ss_pred cCCCcceeEEEeccc------------------CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEec------
Q 001349 840 GRGSILHLIQQIREH------------------TKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVH------ 895 (1094)
Q Consensus 840 ~~t~~~~~~~~l~~H------------------~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~------ 895 (1094)
+.++ .++..+..| ...|++++|+|+|++|++|+.||+|++||+++++.......
T Consensus 180 ~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~ 257 (902)
T 2oaj_A 180 LVEN--EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEIN 257 (902)
T ss_dssp TTTT--EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTT
T ss_pred CCCC--ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccC
Confidence 9998 677777665 57899999999999999999999999999998764332111
Q ss_pred -----------ccCccceeeeecC----c--eEEE---------------------------------------------
Q 001349 896 -----------DIKDQIQNLAVSN----S--ILCF--------------------------------------------- 913 (1094)
Q Consensus 896 -----------~~~~~V~~v~~~~----~--~~~f--------------------------------------------- 913 (1094)
.+..+|.+++|.+ + .+.+
T Consensus 258 ~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 337 (902)
T 2oaj_A 258 VPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIF 337 (902)
T ss_dssp SCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEE
T ss_pred CCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEE
Confidence 1233566666621 1 0000
Q ss_pred -------------ee----------CCCeEEEEEeCCeEEEEcCC-------------------CCceEEEE--------
Q 001349 914 -------------IP----------QGAGIKVHLRNGKTKLLNSS-------------------KYPKCLAL-------- 943 (1094)
Q Consensus 914 -------------sp----------dg~~l~~~~~~g~i~l~~~~-------------------~~v~~l~~-------- 943 (1094)
.+ ++..+++...+|.+++|+.. ..|+++++
T Consensus 338 ~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w 417 (902)
T 2oaj_A 338 PLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLW 417 (902)
T ss_dssp CCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHH
T ss_pred ecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHH
Confidence 00 12245556667888888742 23444444
Q ss_pred --------------------------eC--CEEEEEEcCCeEEEEECCCCceeE--Eeccceee-----cCCCCCeEEEE
Q 001349 944 --------------------------VQ--GKVYCGCQDGAIQEIDLATGTFAT--IQTGHRKL-----LGKANPVHALQ 988 (1094)
Q Consensus 944 --------------------------s~--~~l~sgs~Dg~I~iwDl~~~~~~~--~~~~~~~~-----~~h~~~V~sl~ 988 (1094)
++ ..+++|+.||+|++||+.++.... .+. ..+ .+|...|++++
T Consensus 418 ~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~--~~l~~~~~~~h~~~V~sva 495 (902)
T 2oaj_A 418 LGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFE--VNLSRTLNKAKELAVDKIS 495 (902)
T ss_dssp HHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEE--EEHHHHTTCSSSCCEEEEE
T ss_pred HHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEE--eechhhcCCCCCCceeEEE
Confidence 22 359999999999999999875310 000 011 27889999999
Q ss_pred EeCCccEEEEEECCCCEEEEEECCCC---------------------------------------------eEEEEec-C
Q 001349 989 VHNGLVYTASTSLDGAAVKMWSTSNY---------------------------------------------NMVGSLP-T 1022 (1094)
Q Consensus 989 fs~~~~~las~s~Dg~~I~iwd~~~~---------------------------------------------~~~~~~~-~ 1022 (1094)
|+|++.++++++.|| +|+|||+.++ +++..+. |
T Consensus 496 fspdg~~LAsgs~Dg-tV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h 574 (902)
T 2oaj_A 496 FAAETLELAVSIETG-DVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHAN 574 (902)
T ss_dssp EETTTTEEEEEETTS-CEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCC
T ss_pred ecCCCCeEEEEecCc-EEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcC
Confidence 999999999999997 9999999765 2355666 7
Q ss_pred CCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEE--ec---ccCCcceEEEEEc-----CCC---CEEEEEeCCCcE
Q 001349 1023 LSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIET--LQ---TGTSGKVQCMALD-----DNE---EFLVIGTSDGRI 1088 (1094)
Q Consensus 1023 ~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~--l~---~~h~~~I~~l~~S-----pdg---~~L~sgs~DG~I 1088 (1094)
.+.|++++|+|| ++++|+.|++|++||+.++..+.. +. .+|.+.|++++|+ ||| ++|++|+.||+|
T Consensus 575 ~~~V~svafSpdG~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv 654 (902)
T 2oaj_A 575 KGKTSAINNSNIGFVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEV 654 (902)
T ss_dssp SCSEEEEEECBTSEEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEE
T ss_pred CCcEEEEEecCCcEEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcE
Confidence 899999999999 899999999999999988877642 21 2789999999999 886 899999999999
Q ss_pred EEEeC
Q 001349 1089 QAWGL 1093 (1094)
Q Consensus 1089 ~iWdl 1093 (1094)
++||+
T Consensus 655 ~~wd~ 659 (902)
T 2oaj_A 655 ITYKI 659 (902)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.9e-30 Score=340.83 Aligned_cols=305 Identities=15% Similarity=0.215 Sum_probs=258.9
Q ss_pred hhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCccee
Q 001349 772 LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHL 847 (1094)
Q Consensus 772 ~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~ 847 (1094)
|...+....+++++.++++|+.||+|++||.. .....+.+|.+.|++++|+|+ +|++|+.||+|+|||+.++ +.
T Consensus 614 h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~--~~ 691 (1249)
T 3sfz_A 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG--KL 691 (1249)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CE
T ss_pred ccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC--ce
Confidence 33444566788899999999999999999997 456678899999999999997 9999999999999999999 78
Q ss_pred EEEecccCCCeEEEEEec--CCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEe
Q 001349 848 IQQIREHTKAVTGLAILQ--SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR 925 (1094)
Q Consensus 848 ~~~l~~H~~~V~sv~fsp--dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~ 925 (1094)
+..+.+|...|++++|+| ++.++++|+.||+|++||+.+++. ......+...|.++. |+|+|+.+++++.
T Consensus 692 ~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~-~~~~~~h~~~v~~~~-------~sp~~~~l~s~s~ 763 (1249)
T 3sfz_A 692 VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC-RNTMFGHTNSVNHCR-------FSPDDELLASCSA 763 (1249)
T ss_dssp EEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE-EEEECCCSSCEEEEE-------ECSSTTEEEEEES
T ss_pred EEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch-hheecCCCCCEEEEE-------EecCCCEEEEEEC
Confidence 999999999999999999 566999999999999999999863 233345778888887 8999999999999
Q ss_pred CCeEEEEcC-------------------------------------------------------------------CCCc
Q 001349 926 NGKTKLLNS-------------------------------------------------------------------SKYP 938 (1094)
Q Consensus 926 ~g~i~l~~~-------------------------------------------------------------------~~~v 938 (1094)
+|.+++|+. ...+
T Consensus 764 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v 843 (1249)
T 3sfz_A 764 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTI 843 (1249)
T ss_dssp SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCC
T ss_pred CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCce
Confidence 999999863 1234
Q ss_pred eEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeE
Q 001349 939 KCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNM 1016 (1094)
Q Consensus 939 ~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~ 1016 (1094)
.++.|++ ..+++|+.||.|++||+.++... ..+.+|...|++++|+|++.++++++.|| .|++||+.++..
T Consensus 844 ~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~------~~~~~h~~~v~~v~~spdg~~l~s~s~dg-~v~vw~~~~~~~ 916 (1249)
T 3sfz_A 844 QYCDFSPYDHLAVIALSQYCVELWNIDSRLKV------ADCRGHLSWVHGVMFSPDGSSFLTASDDQ-TIRVWETKKVCK 916 (1249)
T ss_dssp CEEEECSSTTEEEEECSSSCEEEEETTTTEEE------EEECCCSSCEEEEEECTTSSEEEEEETTS-CEEEEEHHHHHS
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcCCCcee------eecCCCccceEEEEECCCCCEEEEEeCCC-eEEEEEccccce
Confidence 5566654 45888888999999999888776 56678999999999999999999999997 999999653100
Q ss_pred -----------------------------E---------EEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEE
Q 001349 1017 -----------------------------V---------GSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRI 1056 (1094)
Q Consensus 1017 -----------------------------~---------~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~ 1056 (1094)
. ........+.+++|+|+ ++++|+.+|.|++||+.+++..
T Consensus 917 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~ 996 (1249)
T 3sfz_A 917 NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVF 996 (1249)
T ss_dssp CCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCE
T ss_pred eeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCcee
Confidence 0 00113467899999998 8999999999999999999998
Q ss_pred EEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1057 ETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1057 ~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
..+ .+|.+.|++++|+|+|++|++++.||+|++||+.
T Consensus 997 ~~~-~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~ 1033 (1249)
T 3sfz_A 997 SSG-VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ 1033 (1249)
T ss_dssp EEC-CCCSSCCCCEEECSSSSCEEEECSSSBEEEEETT
T ss_pred eec-ccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 888 5899999999999999999999999999999973
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=291.46 Aligned_cols=275 Identities=10% Similarity=0.099 Sum_probs=217.0
Q ss_pred cccccccCcEEEEeeCCC-------CeEEEeCCcc------------eeecccCCCcEEEEEEeCCEEEEEE--------
Q 001349 778 YSPLAFEMVKVLSNGHDS-------SADFWNHREL------------VHVDSSENGKVLSIACFRDKIFSGH-------- 830 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg-------~I~vWd~~~~------------~~~~~~h~~~V~~l~fspd~LaSgs-------- 830 (1094)
...|.+|+..|++||.+. .|++|++... ...+.+|...|.+++++++.+++|+
T Consensus 19 sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~~~~l~ 98 (365)
T 4h5i_A 19 GAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNENSTKIT 98 (365)
T ss_dssp EEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCCHHHHH
T ss_pred EEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCCccEEE
Confidence 466788999999987643 5999997521 1245688999999999998877764
Q ss_pred ---CCCeEEEEecCCCcc--eeEEEe-----cccCCCeEEEEEecCCCEEEEEe--CCCcEEEEECCCCceEEEEecccC
Q 001349 831 ---SDGTIKVWTGRGSIL--HLIQQI-----REHTKAVTGLAILQSGEMLYSGS--LDKTARVWSIGNEEIHCVQVHDIK 898 (1094)
Q Consensus 831 ---~Dg~I~vWd~~t~~~--~~~~~l-----~~H~~~V~sv~fspdg~~LaSgs--~DgtI~vWdi~~~~~~~~~~~~~~ 898 (1094)
.|+++++|++.+... ...... ..+...+.+++|||||+++++++ .|++|+|||+.+++. .....+.
T Consensus 99 s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~--~~~~~~~ 176 (365)
T 4h5i_A 99 QGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE--KFEIETR 176 (365)
T ss_dssp HTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE--EEEEECS
T ss_pred EecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE--EEEeCCC
Confidence 477899999876421 112221 23456689999999999987554 689999999999853 3333466
Q ss_pred ccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeec
Q 001349 899 DQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLL 978 (1094)
Q Consensus 899 ~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~ 978 (1094)
..|.+++ |+|||+. +++++ ++.+.+|+..++..... ....
T Consensus 177 ~~V~~v~-------fspdg~~----------------------------l~s~s-~~~~~~~~~~~~~~~~~----~~~~ 216 (365)
T 4h5i_A 177 GEVKDLH-------FSTDGKV----------------------------VAYIT-GSSLEVISTVTGSCIAR----KTDF 216 (365)
T ss_dssp SCCCEEE-------ECTTSSE----------------------------EEEEC-SSCEEEEETTTCCEEEE----ECCC
T ss_pred CceEEEE-------EccCCce----------------------------EEecc-ceeEEEEEeccCcceee----eecC
Confidence 7788887 8999885 55555 55677787777776532 3345
Q ss_pred CCCCCeEEEEEeCCccEEEEEECCCC---EEEEEECCCCeEE----EEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEE
Q 001349 979 GKANPVHALQVHNGLVYTASTSLDGA---AVKMWSTSNYNMV----GSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIW 1048 (1094)
Q Consensus 979 ~h~~~V~sl~fs~~~~~las~s~Dg~---~I~iwd~~~~~~~----~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vw 1048 (1094)
+|...|.+++|+|++.++++++.|++ .+++||+..+... ..+. |...|++++|+|| +|++|+.|++|+||
T Consensus 217 ~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iw 296 (365)
T 4h5i_A 217 DKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALV 296 (365)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred CCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEE
Confidence 68889999999999999999988764 6889998776532 2333 6788999999999 89999999999999
Q ss_pred ECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1049 DQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1049 d~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
|+.+++++..+..+|.+.|++++|||||++|+|||.|++|+||||.
T Consensus 297 d~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 297 KLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp ETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred ECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 9999999999877999999999999999999999999999999983
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=9.3e-30 Score=301.02 Aligned_cols=266 Identities=21% Similarity=0.352 Sum_probs=228.1
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccC
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHT 855 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~ 855 (1094)
...+.+++.++++|+.||.|++||.. .....+.+|.+.|++++|.+++|++|+.||+|++||+.++ ..+..+.+|.
T Consensus 136 v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h~ 213 (435)
T 1p22_A 136 VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTG--EMLNTLIHHC 213 (435)
T ss_dssp EEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSC--CEEEEECCCC
T ss_pred EEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCC--cEEEEEcCCC
Confidence 45677899999999999999999987 4567788999999999998889999999999999999999 7889999999
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC
Q 001349 856 KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS 935 (1094)
Q Consensus 856 ~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~ 935 (1094)
..|.+++|+ +.++++|+.||+|++||+.++....... .+..+.
T Consensus 214 ~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~-----------------------------------~~~~~~ 256 (435)
T 1p22_A 214 EAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRR-----------------------------------VLVGHR 256 (435)
T ss_dssp SCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEE-----------------------------------EECCCS
T ss_pred CcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeee-----------------------------------EecCCC
Confidence 999999996 4699999999999999998864211000 011233
Q ss_pred CCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCe
Q 001349 936 KYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN 1015 (1094)
Q Consensus 936 ~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~ 1015 (1094)
..|.++.+.++.+++|+.||.|++||+++++.. ..+.+|...|.++.++ +.++++++.|| .|++||+++++
T Consensus 257 ~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~------~~~~~~~~~v~~~~~~--~~~l~~g~~dg-~i~iwd~~~~~ 327 (435)
T 1p22_A 257 AAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFV------RTLNGHKRGIACLQYR--DRLVVSGSSDN-TIRLWDIECGA 327 (435)
T ss_dssp SCEEEEEEETTEEEEEETTSEEEEEETTTCCEE------EEEECCSSCEEEEEEE--TTEEEEEETTS-CEEEEETTTCC
T ss_pred CcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEE------EEEcCCCCcEEEEEeC--CCEEEEEeCCC-eEEEEECCCCC
Confidence 455666666678999999999999999999887 5667889999999995 56888999887 99999999999
Q ss_pred EEEEec-CCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCc---------EEEEecccCCcceEEEEEcCCCCEEEEEeCC
Q 001349 1016 MVGSLP-TLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQI---------RIETLQTGTSGKVQCMALDDNEEFLVIGTSD 1085 (1094)
Q Consensus 1016 ~~~~~~-~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~---------~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~D 1085 (1094)
++..+. |...|.++++++.++++|+.||.|++||+.++. ++..+ .+|.+.|++++| ++++|++|+.|
T Consensus 328 ~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~--~~~~l~s~s~D 404 (435)
T 1p22_A 328 CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL-VEHSGRVFRLQF--DEFQIVSSSHD 404 (435)
T ss_dssp EEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE-CCCSSCCCCEEE--CSSCEEECCSS
T ss_pred EEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeec-cCCCCCeEEEEe--CCCEEEEEeCC
Confidence 999988 778899999988899999999999999987766 78888 589999999999 78899999999
Q ss_pred CcEEEEeCC
Q 001349 1086 GRIQAWGLS 1094 (1094)
Q Consensus 1086 G~I~iWdls 1094 (1094)
|+|++||+.
T Consensus 405 g~i~iwd~~ 413 (435)
T 1p22_A 405 DTILIWDFL 413 (435)
T ss_dssp SEEEEEC--
T ss_pred CEEEEEECC
Confidence 999999973
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=295.50 Aligned_cols=282 Identities=17% Similarity=0.186 Sum_probs=231.5
Q ss_pred CCeEEEeCCcceeeccc--CCCcEEEEEEeCC---EEEEEECCCeEEEEec----CCCcc----eeEEEecc--------
Q 001349 795 SSADFWNHRELVHVDSS--ENGKVLSIACFRD---KIFSGHSDGTIKVWTG----RGSIL----HLIQQIRE-------- 853 (1094)
Q Consensus 795 g~I~vWd~~~~~~~~~~--h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~----~t~~~----~~~~~l~~-------- 853 (1094)
..+.+|++......+.. |.+.|++++|+|+ +|++|+.||.|++||+ .++.. .....+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (425)
T 1r5m_A 25 SIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASS 104 (425)
T ss_dssp ---------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC---
T ss_pred cccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccc
Confidence 34567888765555554 5699999999996 9999999999999999 87731 03344433
Q ss_pred --cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEE
Q 001349 854 --HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL 931 (1094)
Q Consensus 854 --H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l 931 (1094)
|.+.|++++|+|++++|++|+.||+|++||.... .......+...|.++. |+|+++.+++++.++.+++
T Consensus 105 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~--~~~~~~~~~~~v~~~~-------~~~~~~~l~~~~~d~~i~i 175 (425)
T 1r5m_A 105 GKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGA--LLNVLNFHRAPIVSVK-------WNKDGTHIISMDVENVTIL 175 (425)
T ss_dssp ---CBCEEEEEECTTSSEEEEEETTSCEEEEETTSC--EEEEECCCCSCEEEEE-------ECTTSSEEEEEETTCCEEE
T ss_pred cCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--eeeeccCCCccEEEEE-------ECCCCCEEEEEecCCeEEE
Confidence 6889999999999999999999999999995443 2333345678888888 9999999999999999999
Q ss_pred EcCCC------------C---------------ceEEEEe-CCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCC
Q 001349 932 LNSSK------------Y---------------PKCLALV-QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANP 983 (1094)
Q Consensus 932 ~~~~~------------~---------------v~~l~~s-~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~ 983 (1094)
|+... . +.++.+. ++.+++++.||.|++||+.++... ..+.+|...
T Consensus 176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~------~~~~~~~~~ 249 (425)
T 1r5m_A 176 WNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPT------GKLIGHHGP 249 (425)
T ss_dssp EETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCS------EEECCCSSC
T ss_pred EECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCcee------eeeccCCCc
Confidence 98532 1 6777776 477999999999999999998766 456678899
Q ss_pred eEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEecc
Q 001349 984 VHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQT 1061 (1094)
Q Consensus 984 V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~~ 1061 (1094)
|.+++|+|++.++++++.|+ .|++||+.+++.+..+. |...+.+++|+|+ .+++++.||.|++||+.+++.+..+ .
T Consensus 250 i~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~ 327 (425)
T 1r5m_A 250 ISVLEFNDTNKLLLSASDDG-TLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALS-I 327 (425)
T ss_dssp EEEEEEETTTTEEEEEETTS-CEEEECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEE-E
T ss_pred eEEEEECCCCCEEEEEcCCC-EEEEEECCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEec-c
Confidence 99999999999999999887 99999999998888887 7889999999999 9999999999999999999999888 4
Q ss_pred cCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1062 GTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1062 ~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
.|...|++++|+|++++|++++.||.|++||+
T Consensus 328 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~ 359 (425)
T 1r5m_A 328 VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDL 359 (425)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred cCCccEEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 78899999999999999999999999999997
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=289.19 Aligned_cols=250 Identities=19% Similarity=0.227 Sum_probs=207.1
Q ss_pred ceeecccCCC-cEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEE-ecccCCCeEEEEEecCCCEEEEEeCCCcEE
Q 001349 805 LVHVDSSENG-KVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQ-IREHTKAVTGLAILQSGEMLYSGSLDKTAR 880 (1094)
Q Consensus 805 ~~~~~~~h~~-~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~-l~~H~~~V~sv~fspdg~~LaSgs~DgtI~ 880 (1094)
....+.+|.+ .|++++|+|+ +|++|+.||+|+|||+.++...+... ..+|.+.|++++|+|+|++|++|+.|++|+
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~ 86 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTC 86 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEE
Confidence 4556778987 9999999997 99999999999999998874323333 368999999999999999999999999999
Q ss_pred EEECCCCceEEEE-ecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEE
Q 001349 881 VWSIGNEEIHCVQ-VHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQE 959 (1094)
Q Consensus 881 vWdi~~~~~~~~~-~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~i 959 (1094)
+||+.++...+.. ...|...|.+++ |+|+|+. +++|+.|++|++
T Consensus 87 iw~~~~~~~~~~~~~~~h~~~v~~v~-------~sp~~~~----------------------------l~s~s~D~~v~i 131 (345)
T 3fm0_A 87 IWKKNQDDFECVTTLEGHENEVKSVA-------WAPSGNL----------------------------LATCSRDKSVWV 131 (345)
T ss_dssp EEEECCC-EEEEEEECCCSSCEEEEE-------ECTTSSE----------------------------EEEEETTSCEEE
T ss_pred EEEccCCCeEEEEEccCCCCCceEEE-------EeCCCCE----------------------------EEEEECCCeEEE
Confidence 9999887644333 345677777777 7777764 889999999999
Q ss_pred EECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeE--EEEec-CCCCEEEEEEeCC--
Q 001349 960 IDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNM--VGSLP-TLSEVRAMVVSSE-- 1034 (1094)
Q Consensus 960 wDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~--~~~~~-~~~~v~~l~~spd-- 1034 (1094)
||+.++...... ..+.+|...|.+++|+|++.++++++.|+ +|++||..++.. ...+. |...|.+++|+|+
T Consensus 132 wd~~~~~~~~~~---~~~~~h~~~v~~~~~~p~~~~l~s~s~d~-~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~ 207 (345)
T 3fm0_A 132 WEVDEEDEYECV---SVLNSHTQDVKHVVWHPSQELLASASYDD-TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ 207 (345)
T ss_dssp EEECTTSCEEEE---EEECCCCSCEEEEEECSSSSCEEEEETTS-CEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSS
T ss_pred EECCCCCCeEEE---EEecCcCCCeEEEEECCCCCEEEEEeCCC-cEEEEEecCCCEEEEEEecCCCCceEEEEECCCCC
Confidence 999877543211 45678999999999999999999999997 999999988753 45555 7789999999998
Q ss_pred EEEEEEcCCeEEEEECCC---------------CcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1035 LVYLGCKGGTVEIWDQKR---------------QIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1035 ~l~sgs~dg~I~vwd~~t---------------~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
++++|+.||+|++||... .+++..+...|...|++++|+|++..|++++.|++|++|++
T Consensus 208 ~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~ 281 (345)
T 3fm0_A 208 RLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQE 281 (345)
T ss_dssp EEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEE
T ss_pred EEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEe
Confidence 899999999999999632 13455664458889999999999999999999999999985
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-30 Score=292.21 Aligned_cols=232 Identities=18% Similarity=0.149 Sum_probs=188.6
Q ss_pred ccccccCcEEEEeeCCCCeEEEeCCc--c----eeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEE
Q 001349 779 SPLAFEMVKVLSNGHDSSADFWNHRE--L----VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQ 850 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~dg~I~vWd~~~--~----~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~ 850 (1094)
..|.++ .++++|+.||+|+|||+.+ . .....+|.+.|++++|+|+ +|++|+.||+|++||+.++ +++.+
T Consensus 88 ~~~s~d-~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~--~~~~~ 164 (344)
T 4gqb_B 88 LTWVGE-RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ--VVLSS 164 (344)
T ss_dssp EEEETT-TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEE
T ss_pred EEEeCC-CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC--cEEEE
Confidence 334444 5789999999999999873 1 2334589999999999997 9999999999999999999 88999
Q ss_pred ecccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCceEEE-EecccCccceeeeecCceEEEeeCCCeEEEEEeCCe
Q 001349 851 IREHTKAVTGLAILQSG-EMLYSGSLDKTARVWSIGNEEIHCV-QVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 928 (1094)
Q Consensus 851 l~~H~~~V~sv~fspdg-~~LaSgs~DgtI~vWdi~~~~~~~~-~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~ 928 (1094)
+.+|.+.|++++|+|++ .+|++|+.||+|++||+++++.... ....+...+.++. |+|++..
T Consensus 165 ~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-------~~p~~~~--------- 228 (344)
T 4gqb_B 165 YRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLA-------WHPQQSE--------- 228 (344)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEE-------ECSSCTT---------
T ss_pred EcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeee-------ecCCCCc---------
Confidence 99999999999999987 5789999999999999998753221 1222233344444 5554432
Q ss_pred EEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCc-cEEEEEECCCCEEE
Q 001349 929 TKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL-VYTASTSLDGAAVK 1007 (1094)
Q Consensus 929 i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~-~~las~s~Dg~~I~ 1007 (1094)
.+++|+.||+|++||+++++.+ ..+.+|...|++++|+|++ .++++++.|+ +|+
T Consensus 229 ------------------~l~sg~~dg~v~~wd~~~~~~~------~~~~~h~~~v~~v~fsp~g~~~lasgs~D~-~i~ 283 (344)
T 4gqb_B 229 ------------------VFVFGDENGTVSLVDTKSTSCV------LSSAVHSQCVTGLVFSPHSVPFLASLSEDC-SLA 283 (344)
T ss_dssp ------------------EEEEEETTSEEEEEESCC--CC------EEEECCSSCEEEEEECSSSSCCEEEEETTS-CEE
T ss_pred ------------------ceEEeccCCcEEEEECCCCcEE------EEEcCCCCCEEEEEEccCCCeEEEEEeCCC-eEE
Confidence 4788999999999999999877 5677899999999999987 5789999996 999
Q ss_pred EEECCCCeEEEEecCCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCc
Q 001349 1008 MWSTSNYNMVGSLPTLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQI 1054 (1094)
Q Consensus 1008 iwd~~~~~~~~~~~~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~ 1054 (1094)
|||+.++++.....|...|++++|+|+ ++++|+.||+|++|++.+..
T Consensus 284 vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 284 VLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp EECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred EEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 999999988776668899999999987 67899999999999998754
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-29 Score=278.97 Aligned_cols=270 Identities=15% Similarity=0.270 Sum_probs=218.5
Q ss_pred ccccccCcEEEEeeCCCCeEEEeCCc--ceeec--ccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEec
Q 001349 779 SPLAFEMVKVLSNGHDSSADFWNHRE--LVHVD--SSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIR 852 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~dg~I~vWd~~~--~~~~~--~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~ 852 (1094)
..+++++ .|++ +.|++|+|||..+ ....+ .+|...|++++|+|+ +|++|+.||+|++||+.++ +++..+.
T Consensus 31 l~WS~~~-~lAv-g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~--~~~~~~~ 106 (318)
T 4ggc_A 31 VDWSSGN-VLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ--KRLRNMT 106 (318)
T ss_dssp EEECTTS-EEEE-EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEEEEE
T ss_pred EEECCCC-EEEE-EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc--eeEEEec
Confidence 3455544 5555 5699999999873 34443 468889999999996 9999999999999999999 8899999
Q ss_pred ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEE
Q 001349 853 EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLL 932 (1094)
Q Consensus 853 ~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~ 932 (1094)
+|...+.++.+ ++..+++|+.++.+++|+...+.........+...+..+. +.++++
T Consensus 107 ~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-------------- 163 (318)
T 4ggc_A 107 SHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR-------WAPDGR-------------- 163 (318)
T ss_dssp CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE-------ECTTSS--------------
T ss_pred CccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEE-------EcCCCC--------------
Confidence 99999887655 5789999999999999999887544444445555565555 556555
Q ss_pred cCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCcc---EEEEEECCCCEEEEE
Q 001349 933 NSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLV---YTASTSLDGAAVKMW 1009 (1094)
Q Consensus 933 ~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~---~las~s~Dg~~I~iw 1009 (1094)
.+++++.||.|++||+++++...... .....|...|.++.+++++. .+++++.+ ++|++|
T Consensus 164 --------------~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~i~lw 226 (318)
T 4ggc_A 164 --------------HLASGGNDNLVNVWPSAPGEGGWVPL--QTFTQHQGAVKAVAWCPWQSNVLATGGGTSD-RHIRIW 226 (318)
T ss_dssp --------------EEEEEETTSCEEEEESSCBTTBSCCS--EEECCCCSCEEEEEECTTSTTEEEEEECTTT-CEEEEE
T ss_pred --------------EEEEEecCcceeEEECCCCcccccce--eeecccCCceEEEEecCCCCcEEEEEecCCC-CEEEEE
Confidence 48899999999999999876442211 34566778999999987543 23444555 499999
Q ss_pred ECCCCeEEEEecCCCCEEEEEEeCC--EEEEE--EcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCC
Q 001349 1010 STSNYNMVGSLPTLSEVRAMVVSSE--LVYLG--CKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSD 1085 (1094)
Q Consensus 1010 d~~~~~~~~~~~~~~~v~~l~~spd--~l~sg--s~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~D 1085 (1094)
|...........+...+..+.|+++ .++++ +.||.|++||+.+++++.++ .+|.+.|++++|+|||++|+||+.|
T Consensus 227 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l-~gH~~~V~~l~~spdg~~l~S~s~D 305 (318)
T 4ggc_A 227 NVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL-KGHTSRVLSLTMSPDGATVASAAAD 305 (318)
T ss_dssp ETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSCEEEEETT
T ss_pred ecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEE-cCCCCCEEEEEEcCCCCEEEEEecC
Confidence 9999998888888999999999987 55544 47999999999999999999 5999999999999999999999999
Q ss_pred CcEEEEeC
Q 001349 1086 GRIQAWGL 1093 (1094)
Q Consensus 1086 G~I~iWdl 1093 (1094)
|+|+|||+
T Consensus 306 ~~v~iWd~ 313 (318)
T 4ggc_A 306 ETLRLWRC 313 (318)
T ss_dssp TEEEEECC
T ss_pred CeEEEEEC
Confidence 99999997
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-29 Score=283.89 Aligned_cols=268 Identities=17% Similarity=0.184 Sum_probs=218.9
Q ss_pred hhhcccccccccc-CcEEEEeeCCCCeEEEeCC-------cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecC
Q 001349 772 LRELRKYSPLAFE-MVKVLSNGHDSSADFWNHR-------ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR 841 (1094)
Q Consensus 772 ~~~~~~~~~~~~d-~~~l~s~s~dg~I~vWd~~-------~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~ 841 (1094)
|...+....+.++ +.++++|+.|++|++|+.. .....+.+|...|.+++|+|+ +|++|+.||+|++||+.
T Consensus 16 H~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~ 95 (319)
T 3frx_A 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVA 95 (319)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 3344444556654 4799999999999999975 235567899999999999997 99999999999999999
Q ss_pred CCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEE
Q 001349 842 GSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIK 921 (1094)
Q Consensus 842 t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~ 921 (1094)
++ +.+..+.+|.+.|.+++|+|++.+|++|+.|++|++||++... ......+...|.++.+.+... ..+++..++
T Consensus 96 ~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~--~~~~~~h~~~v~~~~~~~~~~-~~~~~~~l~ 170 (319)
T 3frx_A 96 TG--ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC--LATLLGHNDWVSQVRVVPNEK-ADDDSVTII 170 (319)
T ss_dssp TT--EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCE--EEEECCCSSCEEEEEECCC-------CCEEE
T ss_pred CC--CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--EEEEeccCCcEEEEEEccCCC-CCCCccEEE
Confidence 99 7889999999999999999999999999999999999998653 333445677888887332211 123566899
Q ss_pred EEEeCCeEEEEcC------------CCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEE
Q 001349 922 VHLRNGKTKLLNS------------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHAL 987 (1094)
Q Consensus 922 ~~~~~g~i~l~~~------------~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl 987 (1094)
+++.++.+++|+. ...|.++++++ ..+++|+.||.|++||+.+++.+..+ .. ...|.++
T Consensus 171 s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~------~~-~~~v~~~ 243 (319)
T 3frx_A 171 SAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL------SA-QDEVFSL 243 (319)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE------EC-CSCEEEE
T ss_pred EEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe------cC-CCcEEEE
Confidence 9999999999984 45789999986 46999999999999999999877433 22 3689999
Q ss_pred EEeCCccEEEEEECCCCEEEEEECCCCeEEEEec---------CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCC
Q 001349 988 QVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---------TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQ 1053 (1094)
Q Consensus 988 ~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~---------~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~ 1053 (1094)
+|+|++.++++++.+ .+++|++..+..+..+. +...+.+++|+|| ++++|+.||.|+|||+.++
T Consensus 244 ~~sp~~~~la~~~~~--~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 244 AFSPNRYWLAAATAT--GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EECSSSSEEEEEETT--EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEcCCCCEEEEEcCC--CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 999999999988754 69999999887776654 2456899999999 8999999999999998754
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-30 Score=341.71 Aligned_cols=304 Identities=17% Similarity=0.217 Sum_probs=242.1
Q ss_pred hccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeC--C--EEEEEECCCeEEEEecCCCccee
Q 001349 774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR--D--KIFSGHSDGTIKVWTGRGSILHL 847 (1094)
Q Consensus 774 ~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fsp--d--~LaSgs~Dg~I~vWd~~t~~~~~ 847 (1094)
..+....+++++.++++++.||+|++||.. .....+.+|.+.|.+++|+| + ++++|+.||+|++||+.++ .+
T Consensus 658 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~--~~ 735 (1249)
T 3sfz_A 658 DEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK--EC 735 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS--SE
T ss_pred CCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc--ch
Confidence 344456788899999999999999999997 45677889999999999998 3 8999999999999999999 78
Q ss_pred EEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEe---------------------------------
Q 001349 848 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQV--------------------------------- 894 (1094)
Q Consensus 848 ~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~--------------------------------- 894 (1094)
+..+.+|.+.|++++|+|+|+++++|+.||+|++||+.++.......
T Consensus 736 ~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 815 (1249)
T 3sfz_A 736 RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIV 815 (1249)
T ss_dssp EEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEE
T ss_pred hheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEE
Confidence 89999999999999999999999999999999999998764211110
Q ss_pred ---------------------cccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEc------------CCCCceEE
Q 001349 895 ---------------------HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN------------SSKYPKCL 941 (1094)
Q Consensus 895 ---------------------~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~------------~~~~v~~l 941 (1094)
..+...+.++. |+|++..++++..+|.+++|+ +...|.++
T Consensus 816 ~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~-------~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v 888 (1249)
T 3sfz_A 816 AAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCD-------FSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGV 888 (1249)
T ss_dssp EETTEEEEEETTTCCEEEEEECSSSSCCCEEE-------ECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred EcCCcEEEEEecCCCceeEEcCCCCCceEEEE-------EcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEE
Confidence 01222333333 455555555555555555443 23444555
Q ss_pred EEeC--CEEEEEEcCCeEEE------------------------------------------------------------
Q 001349 942 ALVQ--GKVYCGCQDGAIQE------------------------------------------------------------ 959 (1094)
Q Consensus 942 ~~s~--~~l~sgs~Dg~I~i------------------------------------------------------------ 959 (1094)
.|++ ..+++++.||.|++
T Consensus 889 ~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 968 (1249)
T 3sfz_A 889 MFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCC 968 (1249)
T ss_dssp EECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEE
T ss_pred EECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEE
Confidence 5543 23444445555554
Q ss_pred -------------------EECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEe
Q 001349 960 -------------------IDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL 1020 (1094)
Q Consensus 960 -------------------wDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~ 1020 (1094)
||+.++... ..+.+|...|++++|+|++.++++++.|| .|++||+.++......
T Consensus 969 ~sp~g~~l~~g~~~g~i~i~d~~~~~~~------~~~~~h~~~v~~l~~s~dg~~l~s~~~dg-~i~vwd~~~~~~~~~~ 1041 (1249)
T 3sfz_A 969 LSPHLEYVAFGDEDGAIKIIELPNNRVF------SSGVGHKKAVRHIQFTADGKTLISSSEDS-VIQVWNWQTGDYVFLQ 1041 (1249)
T ss_dssp ECTTSSEEEEEETTSCCEEEETTTTSCE------EECCCCSSCCCCEEECSSSSCEEEECSSS-BEEEEETTTTEEECCB
T ss_pred EcCCCCEEEEEcCCCCEEEEEcCCCcee------eecccCCCceEEEEECCCCCEEEEEcCCC-EEEEEECCCCceEEEe
Confidence 444444433 34568999999999999999999999997 9999999999988777
Q ss_pred cCCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1021 PTLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1021 ~~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
.|...+.++.|+++ .+++++.||.|++||+.+++....+ .+|.+.|++++|+|||++|++++.||+|++||+.
T Consensus 1042 ~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~-~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~ 1115 (1249)
T 3sfz_A 1042 AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDF-TCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD 1115 (1249)
T ss_dssp CCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEE-ECCSSCCCCEEECSSSSSCEEECCSSCCCEECSS
T ss_pred cCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEE-cccCCcEEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 78899999999998 8999999999999999999999998 5899999999999999999999999999999973
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.1e-31 Score=316.82 Aligned_cols=296 Identities=10% Similarity=0.078 Sum_probs=215.2
Q ss_pred cccCcEEEEeeCCCCeEEEeCCcc------eeecccCCCcEEEEEEeCC--------EEEEEECCCeEEEEecCCCcc--
Q 001349 782 AFEMVKVLSNGHDSSADFWNHREL------VHVDSSENGKVLSIACFRD--------KIFSGHSDGTIKVWTGRGSIL-- 845 (1094)
Q Consensus 782 ~~d~~~l~s~s~dg~I~vWd~~~~------~~~~~~h~~~V~~l~fspd--------~LaSgs~Dg~I~vWd~~t~~~-- 845 (1094)
.+++..+++++.|++|+||++... ...+.+|.+.|.+++|+|+ +|++|+.||+|++||+.++..
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~ 249 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV 249 (524)
T ss_dssp ------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence 466778899999999999998632 1345678899999999984 999999999999999987631
Q ss_pred -------eeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCC-
Q 001349 846 -------HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQG- 917 (1094)
Q Consensus 846 -------~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg- 917 (1094)
.+..++.+|...|++++|+++ ..|++|+.||+|++||++++.........|...|.++++ .|+|+|
T Consensus 250 ~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~-----~~s~~g~ 323 (524)
T 2j04_B 250 HVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVST-----AYSDFED 323 (524)
T ss_dssp SEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEE-----ECCTTSC
T ss_pred ccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEE-----EcCCCCC
Confidence 123477899999999999986 489999999999999999764222233456788888831 278888
Q ss_pred CeEEEEEeCCeEEEEcCC--------------CCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCC
Q 001349 918 AGIKVHLRNGKTKLLNSS--------------KYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKA 981 (1094)
Q Consensus 918 ~~l~~~~~~g~i~l~~~~--------------~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~ 981 (1094)
..+++++.|+++++|+.. ..+.+++|+| ..+++++.|++|++||++++... ..+.+|.
T Consensus 324 ~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~------~~l~gH~ 397 (524)
T 2j04_B 324 TVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAV------HPLVSRE 397 (524)
T ss_dssp CEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCC------EEEEECS
T ss_pred eEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccc------eeeecCC
Confidence 889999999999999852 2477899997 36899999999999999998875 4566899
Q ss_pred CCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec------CCCCEEEEEEeCC-EEEEEEcCCeEEEEECC-CC
Q 001349 982 NPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP------TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQK-RQ 1053 (1094)
Q Consensus 982 ~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~------~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~-t~ 1053 (1094)
..|++++|+|++.++++++.|+ +|++||+..+ ...... +...+..++|+|+ .++.... .+.+|+.. ++
T Consensus 398 ~~V~sva~Sp~g~~l~Sgs~Dg-tv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~--~~~~~~~~~~g 473 (524)
T 2j04_B 398 TTITAIGVSRLHPMVLAGSADG-SLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDS--SYEVYPLTVND 473 (524)
T ss_dssp SCEEEEECCSSCCBCEEEETTT-EEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEECC--CCCCCC-----
T ss_pred CceEEEEeCCCCCeEEEEECCC-EEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEccC--CceecccccCC
Confidence 9999999999999999999997 9999998653 221111 1224678899987 3333322 23344433 46
Q ss_pred cEEEEecccCCcceEEEEEcCCCC---EEEEEeCCCcEEEEeCC
Q 001349 1054 IRIETLQTGTSGKVQCMALDDNEE---FLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1054 ~~~~~l~~~h~~~I~~l~~Spdg~---~L~sgs~DG~I~iWdls 1094 (1094)
..+..+ .+|.+.|++++|+|++. ++++|+.||+|+||++.
T Consensus 474 ~~~~~l-~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 474 VSKAKI-DAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp ---------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred cceeee-cCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence 667777 58999999999999964 99999999999999973
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-30 Score=292.71 Aligned_cols=279 Identities=15% Similarity=0.200 Sum_probs=220.6
Q ss_pred cccccccccc----CcEEEEeeCCCCeEEEeCCc--ceeecc-----cCCCcEEEEEEeCC------EEEEEECCCeEEE
Q 001349 775 LRKYSPLAFE----MVKVLSNGHDSSADFWNHRE--LVHVDS-----SENGKVLSIACFRD------KIFSGHSDGTIKV 837 (1094)
Q Consensus 775 ~~~~~~~~~d----~~~l~s~s~dg~I~vWd~~~--~~~~~~-----~h~~~V~~l~fspd------~LaSgs~Dg~I~v 837 (1094)
.+....+.++ ...+++++.++.|++|+... ....+. .|.+.|++++|+|+ +|++|+.||+|++
T Consensus 20 ~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v 99 (366)
T 3k26_A 20 PLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRI 99 (366)
T ss_dssp CEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEE
T ss_pred ceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEE
Confidence 3334445542 34677777778999999872 222332 36788999999986 8999999999999
Q ss_pred EecCCCcceeEEEecccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCceEEEEe--cccCccceeeeecCceEEEe
Q 001349 838 WTGRGSILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQV--HDIKDQIQNLAVSNSILCFI 914 (1094)
Q Consensus 838 Wd~~t~~~~~~~~l~~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~~~~~~--~~~~~~V~~v~~~~~~~~fs 914 (1094)
||+.++ +.+..+.+|...|++++|+| ++++|++|+.||+|++||+.+++...... ..+...|.++. |+
T Consensus 100 ~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-------~~ 170 (366)
T 3k26_A 100 INPITM--QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSAD-------YD 170 (366)
T ss_dssp ECTTTC--CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEE-------EC
T ss_pred EEchhc--eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEE-------EC
Confidence 999998 78888999999999999999 99999999999999999999875322221 35667777776 77
Q ss_pred eCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEecc---------------------
Q 001349 915 PQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTG--------------------- 973 (1094)
Q Consensus 915 pdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~--------------------- 973 (1094)
|++.. +++|+.||.|++||+++++....+..
T Consensus 171 ~~~~~----------------------------l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (366)
T 3k26_A 171 LLGEK----------------------------IMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 222 (366)
T ss_dssp TTSSE----------------------------EEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCC
T ss_pred CCCCE----------------------------EEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccC
Confidence 77664 78889999999999987754421110
Q ss_pred -ceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeE--------------EEEec-CCCCEEEEEEeCC---
Q 001349 974 -HRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNM--------------VGSLP-TLSEVRAMVVSSE--- 1034 (1094)
Q Consensus 974 -~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~--------------~~~~~-~~~~v~~l~~spd--- 1034 (1094)
.....+|...|.++.|+ +.++++++.|+ .|++||+.++.. +..+. |...|.+++|+|+
T Consensus 223 ~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 299 (366)
T 3k26_A 223 DFSTRDIHRNYVDCVRWL--GDLILSKSCEN-AIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ 299 (366)
T ss_dssp SEEECSSCSSCCCEEEEE--TTEEEEECSSS-EEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS
T ss_pred ccccccCCcceEEEEEEc--CCEEEEEecCC-EEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC
Confidence 12233488999999999 55888988886 999999987643 55555 6778888888865
Q ss_pred -EEEEEEcCCeEEEEECCCCc----EEEEecccC--CcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1035 -LVYLGCKGGTVEIWDQKRQI----RIETLQTGT--SGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1035 -~l~sgs~dg~I~vwd~~t~~----~~~~l~~~h--~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
++++|+.||.|++||+.+++ ....+ .+| ...|++++|+|++++|++++.||.|++||+.
T Consensus 300 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 300 KMLALGNQVGKLYVWDLEVEDPHKAKCTTL-THHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SEEEEECTTSCEEEEECCSSSGGGCEEEEE-CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cEEEEEecCCcEEEEECCCCCCccccceEE-cccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 89999999999999999875 44466 456 7899999999999999999999999999974
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-29 Score=318.68 Aligned_cols=304 Identities=17% Similarity=0.158 Sum_probs=257.4
Q ss_pred hhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeE
Q 001349 773 RELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLI 848 (1094)
Q Consensus 773 ~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~ 848 (1094)
...+....+++++.++++++.||.|++||.. .....+.+|.+.|++++|+|+ +|++|+.||+|++||+.++ ..+
T Consensus 13 ~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~--~~~ 90 (814)
T 3mkq_A 13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG--EKV 90 (814)
T ss_dssp CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC--CEE
T ss_pred CCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC--cEE
Confidence 3445567788899999999999999999987 456677899999999999996 9999999999999999998 788
Q ss_pred EEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEee-CCCeEEEEEeCC
Q 001349 849 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP-QGAGIKVHLRNG 927 (1094)
Q Consensus 849 ~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fsp-dg~~l~~~~~~g 927 (1094)
..+.+|.+.|++++|+|++++|++++.||+|++||+.++.........+...|.++. |+| ++..+++++.+|
T Consensus 91 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~-------~~p~~~~~l~~~~~dg 163 (814)
T 3mkq_A 91 VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA-------FNPKDPSTFASGCLDR 163 (814)
T ss_dssp EEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEE-------EETTEEEEEEEEETTS
T ss_pred EEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEE-------EEcCCCCEEEEEeCCC
Confidence 889999999999999999999999999999999999987434444455678888888 999 888999999999
Q ss_pred eEEEEcCC-------------CCceEEEEeC----CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEe
Q 001349 928 KTKLLNSS-------------KYPKCLALVQ----GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVH 990 (1094)
Q Consensus 928 ~i~l~~~~-------------~~v~~l~~s~----~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs 990 (1094)
.+.+|+.. ..+.++.+++ ..+++|+.||.|++||+.++... ..+.+|...|.+++|+
T Consensus 164 ~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~------~~~~~~~~~v~~~~~~ 237 (814)
T 3mkq_A 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV------ATLEGHMSNVSFAVFH 237 (814)
T ss_dssp EEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEE------EEEECCSSCEEEEEEC
T ss_pred eEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEE------EEEcCCCCCEEEEEEc
Confidence 99999842 5688888864 46999999999999999998876 5567788999999999
Q ss_pred CCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCCE---EEEEEcCCeEEEEECCCCcEEEEec------
Q 001349 991 NGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSEL---VYLGCKGGTVEIWDQKRQIRIETLQ------ 1060 (1094)
Q Consensus 991 ~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd~---l~sgs~dg~I~vwd~~t~~~~~~l~------ 1060 (1094)
|++.++++++.|| .|++||+.+++.+..+. +...+.+++|+|+. +++++.++.+.+|++..+.....+.
T Consensus 238 ~~~~~l~~~~~dg-~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 316 (814)
T 3mkq_A 238 PTLPIIISGSEDG-TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLV 316 (814)
T ss_dssp SSSSEEEEEETTS-CEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEE
T ss_pred CCCCEEEEEeCCC-eEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEE
Confidence 9999999999997 99999999999998888 67899999999982 4555567778899876432221110
Q ss_pred ------------------------------------ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1061 ------------------------------------TGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1061 ------------------------------------~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
..+...+.+++|+|+|+++++++ ||.+.+|++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~ 384 (814)
T 3mkq_A 317 WSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTA 384 (814)
T ss_dssp EECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEET
T ss_pred EECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEEC
Confidence 12344678999999999999888 899999985
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.97 E-value=6.5e-29 Score=279.44 Aligned_cols=244 Identities=20% Similarity=0.335 Sum_probs=209.0
Q ss_pred ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 001349 805 LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVW 882 (1094)
Q Consensus 805 ~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vW 882 (1094)
....+.+|.+.|++++|+|+ +|++|+.||+|++||..++ .....+.+|...|.+++|+|++++|++|+.||+|++|
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc--ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 34567899999999999997 9999999999999999988 6788899999999999999999999999999999999
Q ss_pred ECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEEC
Q 001349 883 SIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDL 962 (1094)
Q Consensus 883 di~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl 962 (1094)
|+.+++.. .....+...|.++. |+|+++ .+++|+.||.|++||+
T Consensus 93 d~~~~~~~-~~~~~~~~~v~~~~-------~~~~~~----------------------------~l~s~~~d~~i~iwd~ 136 (312)
T 4ery_A 93 DVSSGKCL-KTLKGHSNYVFCCN-------FNPQSN----------------------------LIVSGSFDESVRIWDV 136 (312)
T ss_dssp ETTTCCEE-EEEECCSSCEEEEE-------ECSSSS----------------------------EEEEEETTSCEEEEET
T ss_pred ECCCCcEE-EEEcCCCCCEEEEE-------EcCCCC----------------------------EEEEEeCCCcEEEEEC
Confidence 99987522 22234556666665 666665 4889999999999999
Q ss_pred CCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec--CCCCEEEEEEeCC--EEEE
Q 001349 963 ATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP--TLSEVRAMVVSSE--LVYL 1038 (1094)
Q Consensus 963 ~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~--~~~~v~~l~~spd--~l~s 1038 (1094)
++++.. ..+..|..+|.++.|++++.++++++.|| .|++||+++++.+..+. +...+..++|+|+ ++++
T Consensus 137 ~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 209 (312)
T 4ery_A 137 KTGKCL------KTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 209 (312)
T ss_dssp TTCCEE------EEECCCSSCEEEEEECTTSSEEEEEETTS-CEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEE
T ss_pred CCCEEE------EEecCCCCcEEEEEEcCCCCEEEEEeCCC-cEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEE
Confidence 999877 45677889999999999999999999997 99999999998887775 5677999999998 8999
Q ss_pred EEcCCeEEEEECCCCcEEEEecccCCcce---EEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1039 GCKGGTVEIWDQKRQIRIETLQTGTSGKV---QCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1039 gs~dg~I~vwd~~t~~~~~~l~~~h~~~I---~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
++.||.|++||+.+++.+..+ .+|...+ ......+++.+|++|+.||.|++||+.
T Consensus 210 ~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~ 267 (312)
T 4ery_A 210 ATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 267 (312)
T ss_dssp EETTTEEEEEETTTTEEEEEE-CSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETT
T ss_pred EcCCCeEEEEECCCCcEEEEE-EecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECC
Confidence 999999999999999999888 4666543 233334678999999999999999973
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=300.85 Aligned_cols=281 Identities=13% Similarity=0.136 Sum_probs=210.0
Q ss_pred ccccccccccCcEEEEeeCCCCeEEEeCCc----ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCc-cee
Q 001349 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHRE----LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI-LHL 847 (1094)
Q Consensus 775 ~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~----~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~-~~~ 847 (1094)
.+....+.+++.++++++.|+.|++||... ....+.+|.+.|++++|+|+ +|++|+.||+|++||+.++. ...
T Consensus 13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~ 92 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQ 92 (377)
T ss_dssp CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCC
T ss_pred cEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceee
Confidence 345667888999999999999999999873 45677899999999999996 99999999999999999874 346
Q ss_pred EEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCce--EEEEecc-cCccceeeeecCceEEEeeCCCeEEEEE
Q 001349 848 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEI--HCVQVHD-IKDQIQNLAVSNSILCFIPQGAGIKVHL 924 (1094)
Q Consensus 848 ~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~--~~~~~~~-~~~~V~~v~~~~~~~~fspdg~~l~~~~ 924 (1094)
...+.+|...|++++|+|++++|++|+.|++|++||+++++. ....... +...|.++. |+|+++
T Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~-------~~~~~~------ 159 (377)
T 3dwl_C 93 TLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLD-------WHPNNV------ 159 (377)
T ss_dssp EEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEE-------ECTTSS------
T ss_pred eeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEE-------EcCCCC------
Confidence 788889999999999999999999999999999999998741 0111222 566677666 666665
Q ss_pred eCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeE------------EeccceeecCCCCCeEEEEEeCC
Q 001349 925 RNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFAT------------IQTGHRKLLGKANPVHALQVHNG 992 (1094)
Q Consensus 925 ~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~------------~~~~~~~~~~h~~~V~sl~fs~~ 992 (1094)
.+++|+.||.|++||+.++.... .......+ +|...|++++|+|+
T Consensus 160 ----------------------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~ 216 (377)
T 3dwl_C 160 ----------------------LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPS 216 (377)
T ss_dssp ----------------------EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTT
T ss_pred ----------------------EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCC
Confidence 38889999999999986432110 00011334 89999999999999
Q ss_pred ccEEEEEECCCCEEEEEECCCCeE----EEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCc-----------
Q 001349 993 LVYTASTSLDGAAVKMWSTSNYNM----VGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI----------- 1054 (1094)
Q Consensus 993 ~~~las~s~Dg~~I~iwd~~~~~~----~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~----------- 1054 (1094)
+.++++++.|| .|++||+.+++. +..+. |...|.+++|+|+ ++++|+.++.+ +|+.....
T Consensus 217 ~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 294 (377)
T 3dwl_C 217 GNALAYAGHDS-SVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGT 294 (377)
T ss_dssp SSCEEEEETTT-EEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCC
T ss_pred CCEEEEEeCCC-cEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccc
Confidence 99999999997 999999999876 55565 6788999999998 67777666655 66654111
Q ss_pred ----------------------------EEE------------EecccCCcceEEEEEcCCC-C---EEEEEeCCCcEEE
Q 001349 1055 ----------------------------RIE------------TLQTGTSGKVQCMALDDNE-E---FLVIGTSDGRIQA 1090 (1094)
Q Consensus 1055 ----------------------------~~~------------~l~~~h~~~I~~l~~Spdg-~---~L~sgs~DG~I~i 1090 (1094)
... .+...|.+.|+++++.+++ . .|+|||.||+|++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~i 374 (377)
T 3dwl_C 295 SKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVL 374 (377)
T ss_dssp CCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEE
T ss_pred cccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEE
Confidence 000 0112389999999976544 3 6999999999999
Q ss_pred EeC
Q 001349 1091 WGL 1093 (1094)
Q Consensus 1091 Wdl 1093 (1094)
||+
T Consensus 375 Wdl 377 (377)
T 3dwl_C 375 WTL 377 (377)
T ss_dssp ECC
T ss_pred ecC
Confidence 996
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-30 Score=290.88 Aligned_cols=247 Identities=19% Similarity=0.248 Sum_probs=196.4
Q ss_pred eecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEec--CCCEEEEEeCCCcEEEE
Q 001349 807 HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ--SGEMLYSGSLDKTARVW 882 (1094)
Q Consensus 807 ~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fsp--dg~~LaSgs~DgtI~vW 882 (1094)
..+.+|.+.|++++|+|+ +|++|+.||+|+|||+.++....+..+.+|.+.|++++|++ ++++|+||+.|++|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 356789999999999986 99999999999999998874446788999999999999986 48999999999999999
Q ss_pred ECCCCceEE-EEecccCccceeeeecCceEEEeeC--CCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEE
Q 001349 883 SIGNEEIHC-VQVHDIKDQIQNLAVSNSILCFIPQ--GAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQE 959 (1094)
Q Consensus 883 di~~~~~~~-~~~~~~~~~V~~v~~~~~~~~fspd--g~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~i 959 (1094)
|+.++.... .....|...|.++. |+|+ |. .+++|+.||+|++
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~-------~~p~~~g~----------------------------~lasgs~D~~i~l 131 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVC-------WAPHDYGL----------------------------ILACGSSDGAISL 131 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEE-------ECCTTTCS----------------------------CEEEECSSSCEEE
T ss_pred ECCCCcceEEEEccCCCCceEEEE-------ECCCCCCc----------------------------EEEEEcCCCCEEE
Confidence 999875322 22334566777776 6666 33 3889999999999
Q ss_pred EECCCCceeEEeccceeecCCCCCeEEEEEeCC-----------------ccEEEEEECCCCEEEEEECCCC---eEEEE
Q 001349 960 IDLATGTFATIQTGHRKLLGKANPVHALQVHNG-----------------LVYTASTSLDGAAVKMWSTSNY---NMVGS 1019 (1094)
Q Consensus 960 wDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~-----------------~~~las~s~Dg~~I~iwd~~~~---~~~~~ 1019 (1094)
||++++..... ...+.+|...|.++.|+|+ +.++++++.|+ +|++||+... .+...
T Consensus 132 wd~~~~~~~~~---~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~-~v~lWd~~~~~~~~~~~~ 207 (316)
T 3bg1_A 132 LTYTGEGQWEV---KKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDN-LIKLWKEEEDGQWKEEQK 207 (316)
T ss_dssp EEECSSSCEEE---CCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTS-BCCEEEECTTSCEEEEEC
T ss_pred EecCCCCCcce---eeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCC-eEEEEEeCCCCccceeee
Confidence 99987642211 1345688899999999987 36889999886 9999999755 45666
Q ss_pred ec-CCCCEEEEEEeCC------EEEEEEcCCeEEEEECCCC---c-EEEEecccCCcceEEEEEcCCCCEEEEEeCCCcE
Q 001349 1020 LP-TLSEVRAMVVSSE------LVYLGCKGGTVEIWDQKRQ---I-RIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRI 1088 (1094)
Q Consensus 1020 ~~-~~~~v~~l~~spd------~l~sgs~dg~I~vwd~~t~---~-~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I 1088 (1094)
+. |...|.+++|+|+ ++++|+.||+|++||+.+. . ....+ .+|.+.|++++|+|+|++|++|+.||+|
T Consensus 208 l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~-~~~~~~v~~v~~sp~g~~las~~~D~~v 286 (316)
T 3bg1_A 208 LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLL-HKFNDVVWHVSWSITANILAVSGGDNKV 286 (316)
T ss_dssp CBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEE-EECSSCEEEEEECTTTCCEEEEESSSCE
T ss_pred cccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhh-hcCCCcEEEEEEcCCCCEEEEEcCCCeE
Confidence 66 7788999999985 6999999999999998763 1 12233 4688899999999999999999999999
Q ss_pred EEEeC
Q 001349 1089 QAWGL 1093 (1094)
Q Consensus 1089 ~iWdl 1093 (1094)
++|+.
T Consensus 287 ~lw~~ 291 (316)
T 3bg1_A 287 TLWKE 291 (316)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99985
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=287.39 Aligned_cols=278 Identities=16% Similarity=0.213 Sum_probs=226.2
Q ss_pred eeecccCCCcEEEEEEeCC---EEEEEEC---CCeEEEEecCCCcceeEEEecccCCCeEEEEEecC---CCEEEEEeCC
Q 001349 806 VHVDSSENGKVLSIACFRD---KIFSGHS---DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS---GEMLYSGSLD 876 (1094)
Q Consensus 806 ~~~~~~h~~~V~~l~fspd---~LaSgs~---Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspd---g~~LaSgs~D 876 (1094)
.....+|.+.|++++|+|+ ++++|+. ||+|++||+.++....... .+|...|++++|+|+ |++|++|+.|
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLRE-IEKAKPIKCGTFGATSLQQRYLATGDFG 89 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEE-EEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceee-ecccCcEEEEEEcCCCCCCceEEEecCC
Confidence 3456789999999999995 5667776 9999999999884333333 379999999999998 7999999999
Q ss_pred CcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCC-----------------Cce
Q 001349 877 KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSK-----------------YPK 939 (1094)
Q Consensus 877 gtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~-----------------~v~ 939 (1094)
|+|++||+.+++........+...|.++.+.+. ++|+|+++.+++++.+|.+++|+... .+.
T Consensus 90 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~ 168 (357)
T 3i2n_A 90 GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGG-LGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCW 168 (357)
T ss_dssp SCEEEECTTSCSSCSEEECCCSSCEEEEEEESG-GGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEE
T ss_pred CeEEEEeCCCCCccEEEEEecccceEEEeeccc-cccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceE
Confidence 999999999876223334467888888864331 23789999999999999999998521 466
Q ss_pred EEEE----e--CCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeC---CccEEEEEECCCCEEEEEE
Q 001349 940 CLAL----V--QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN---GLVYTASTSLDGAAVKMWS 1010 (1094)
Q Consensus 940 ~l~~----s--~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~---~~~~las~s~Dg~~I~iwd 1010 (1094)
++.+ + +..+++|+.||.|++||++++... ....|...|.+++|+| ++.++++++.|| .|++||
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg-~i~i~d 240 (357)
T 3i2n_A 169 TVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALR-------WETNIKNGVCSLEFDRKDISMNKLVATSLEG-KFHVFD 240 (357)
T ss_dssp EEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEE-------EEEECSSCEEEEEESCSSSSCCEEEEEESTT-EEEEEE
T ss_pred EEEEEeccCCCCCEEEEEccCCeEEEEECccCcee-------eecCCCCceEEEEcCCCCCCCCEEEEECCCC-eEEEEe
Confidence 6773 2 356999999999999999998864 2345778999999999 899999999987 999999
Q ss_pred CCCCeEEEEe------cCCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCC-------------------cEEEEeccc
Q 001349 1011 TSNYNMVGSL------PTLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQ-------------------IRIETLQTG 1062 (1094)
Q Consensus 1011 ~~~~~~~~~~------~~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~-------------------~~~~~l~~~ 1062 (1094)
++++.....+ .|...|.+++|+|+ ++++|+.||.|++||+.++ +.+..+ .+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~ 319 (357)
T 3i2n_A 241 MRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV-TL 319 (357)
T ss_dssp EEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE-EC
T ss_pred CcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc-cc
Confidence 9876654333 37889999999998 6999999999999998754 356666 58
Q ss_pred CCcceEEEEEcCCCCEEE-EEeCCCcEEEEeCC
Q 001349 1063 TSGKVQCMALDDNEEFLV-IGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1063 h~~~I~~l~~Spdg~~L~-sgs~DG~I~iWdls 1094 (1094)
|.+.|++++|+|+|++|+ +++.||.|++||++
T Consensus 320 ~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 320 STQPISSLDWSPDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp CSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred CCCCeeEEEEcCCCCeEEEEecCCCcEEEEECC
Confidence 999999999999999998 89999999999974
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-30 Score=293.49 Aligned_cols=264 Identities=16% Similarity=0.200 Sum_probs=194.4
Q ss_pred cCcEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCC--EEEEEEC------CCeEEEEecCCCcc--eeEEEecc
Q 001349 784 EMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHS------DGTIKVWTGRGSIL--HLIQQIRE 853 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd--~LaSgs~------Dg~I~vWd~~t~~~--~~~~~l~~ 853 (1094)
+..+ +.++.+.....|+... .....|.+.|++++|+|| +|++|+. ||+|++|+..++.. .......+
T Consensus 16 ~~~~-~~~~g~~~~~~w~~p~--~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~ 92 (357)
T 4g56_B 16 ENLY-FQSNGSSKGSAWGRPV--TAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQ 92 (357)
T ss_dssp ---------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEE
T ss_pred cceE-EecCCCccccccCCCC--CCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCC
Confidence 3434 4444566778898763 234579999999999998 9999997 78899999876621 22334457
Q ss_pred cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceE---EEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEE
Q 001349 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIH---CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK 930 (1094)
Q Consensus 854 H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~---~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~ 930 (1094)
|...|++++|+|++. +++++.||+|+|||+.+++.. ......|...|.+++ |+|+|+
T Consensus 93 ~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~-------~spdg~------------ 152 (357)
T 4g56_B 93 TEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLS-------VFSDGT------------ 152 (357)
T ss_dssp CSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEE-------ECSSSS------------
T ss_pred CCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEE-------ECCCCC------------
Confidence 999999999999975 556888999999999887522 122334566677766 777766
Q ss_pred EEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCc-cEEEEEECCCCEEEEE
Q 001349 931 LLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL-VYTASTSLDGAAVKMW 1009 (1094)
Q Consensus 931 l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~-~~las~s~Dg~~I~iw 1009 (1094)
.+++|+.||.|++||+.+++.. ..+.+|...|++++|++++ .++++++.|+ +|++|
T Consensus 153 ----------------~l~sgs~dg~v~iwd~~~~~~~------~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg-~v~~w 209 (357)
T 4g56_B 153 ----------------QAVSGGKDFSVKVWDLSQKAVL------KSYNAHSSEVNCVAACPGKDTIFLSCGEDG-RILLW 209 (357)
T ss_dssp ----------------EEEEEETTSCEEEEETTTTEEE------EEECCCSSCEEEEEECTTCSSCEEEEETTS-CEEEC
T ss_pred ----------------EEEEEeCCCeEEEEECCCCcEE------EEEcCCCCCEEEEEEccCCCceeeeeccCC-ceEEE
Confidence 4889999999999999999887 5667899999999999876 4778888886 99999
Q ss_pred ECCCCeEEEEec---CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCC-CEEEEE
Q 001349 1010 STSNYNMVGSLP---TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNE-EFLVIG 1082 (1094)
Q Consensus 1010 d~~~~~~~~~~~---~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg-~~L~sg 1082 (1094)
|++++++...+. +...+.+++|+|+ ++++|+.|+.|++||+.+++.+..+ .+|...|++++|+|++ ++|++|
T Consensus 210 d~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~~lasg 288 (357)
T 4g56_B 210 DTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS-AVHSQNITGLAYSYHSSPFLASI 288 (357)
T ss_dssp CTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEE-CCCSSCEEEEEECSSSSCCEEEE
T ss_pred ECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEE-eccceeEEEEEEcCCCCCEEEEE
Confidence 999988776654 5677999999986 7999999999999999999999999 5899999999999987 579999
Q ss_pred eCCCcEEEEeCC
Q 001349 1083 TSDGRIQAWGLS 1094 (1094)
Q Consensus 1083 s~DG~I~iWdls 1094 (1094)
+.||+|+|||+.
T Consensus 289 s~D~~i~iwd~~ 300 (357)
T 4g56_B 289 SEDCTVAVLDAD 300 (357)
T ss_dssp ETTSCEEEECTT
T ss_pred eCCCEEEEEECC
Confidence 999999999973
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.9e-30 Score=301.16 Aligned_cols=277 Identities=11% Similarity=0.149 Sum_probs=220.9
Q ss_pred hhhccccccccc-cCcEEEEeeCCCCeEEEeCCc---c---e-eecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecC
Q 001349 772 LRELRKYSPLAF-EMVKVLSNGHDSSADFWNHRE---L---V-HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR 841 (1094)
Q Consensus 772 ~~~~~~~~~~~~-d~~~l~s~s~dg~I~vWd~~~---~---~-~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~ 841 (1094)
|...+....+.+ ++.++++|+.||+|++||... . . ....+|.+.|++++|+|+ +|++|+.||+|++||+.
T Consensus 62 h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~ 141 (437)
T 3gre_A 62 EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVN 141 (437)
T ss_dssp TTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEE
T ss_pred CCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEec
Confidence 444556677888 899999999999999999864 1 1 222269999999999995 99999999999999994
Q ss_pred ---CCcceeEEEec----------c--cCCCeEEEE--EecCCCEEEEEeCCCcEEEEECCCCceE-EEEecccCcccee
Q 001349 842 ---GSILHLIQQIR----------E--HTKAVTGLA--ILQSGEMLYSGSLDKTARVWSIGNEEIH-CVQVHDIKDQIQN 903 (1094)
Q Consensus 842 ---t~~~~~~~~l~----------~--H~~~V~sv~--fspdg~~LaSgs~DgtI~vWdi~~~~~~-~~~~~~~~~~V~~ 903 (1094)
++ .....+. . +...+.++. +++++.+|++|+.||+|++||+++++.. .+....+...|.+
T Consensus 142 ~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~ 219 (437)
T 3gre_A 142 HYQQE--SEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSS 219 (437)
T ss_dssp EEEET--TEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEE
T ss_pred cccCC--ceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEE
Confidence 44 2333222 2 556677777 5578999999999999999999987632 2222225677777
Q ss_pred eeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeec-CCCC
Q 001349 904 LAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLL-GKAN 982 (1094)
Q Consensus 904 v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~-~h~~ 982 (1094)
++ |+|++.. +++|+.||.|++||+++++.+. .+. +|..
T Consensus 220 ~~-------~s~~~~~----------------------------l~s~~~dg~i~iwd~~~~~~~~------~~~~~~~~ 258 (437)
T 3gre_A 220 IC-------IDEECCV----------------------------LILGTTRGIIDIWDIRFNVLIR------SWSFGDHA 258 (437)
T ss_dssp EE-------ECTTSCE----------------------------EEEEETTSCEEEEETTTTEEEE------EEBCTTCE
T ss_pred EE-------ECCCCCE----------------------------EEEEcCCCeEEEEEcCCccEEE------EEecCCCC
Confidence 77 7777764 8899999999999999988773 332 5677
Q ss_pred CeEEEEEe----CCccEEEEEECCCCEEEEEECCCCeEEEEec---------------------------CCCCEEEEEE
Q 001349 983 PVHALQVH----NGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---------------------------TLSEVRAMVV 1031 (1094)
Q Consensus 983 ~V~sl~fs----~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~---------------------------~~~~v~~l~~ 1031 (1094)
+|++++|+ +++.++++++.|| .|++||+++++++..+. |...|++++|
T Consensus 259 ~v~~~~~~~~~s~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~ 337 (437)
T 3gre_A 259 PITHVEVCQFYGKNSVIVVGGSSKT-FLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISV 337 (437)
T ss_dssp EEEEEEECTTTCTTEEEEEEESTTE-EEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEE
T ss_pred ceEEEEeccccCCCccEEEEEcCCC-cEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEE
Confidence 89999665 5688999999886 99999999999888776 3345888999
Q ss_pred eCC-EEEEEEcCCeEEEEECCCCcEEEEecc------------------------------------cCCcceEEEEEcC
Q 001349 1032 SSE-LVYLGCKGGTVEIWDQKRQIRIETLQT------------------------------------GTSGKVQCMALDD 1074 (1094)
Q Consensus 1032 spd-~l~sgs~dg~I~vwd~~t~~~~~~l~~------------------------------------~h~~~I~~l~~Sp 1074 (1094)
+++ ++++|+.||.|++||+.+++....+.. .|.+.|++++|++
T Consensus 338 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~ 417 (437)
T 3gre_A 338 SNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCE 417 (437)
T ss_dssp ETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEE
T ss_pred CCceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeec
Confidence 966 899999999999999999887776642 1888999999999
Q ss_pred C--CCEEEEEeCCCcEEEEe
Q 001349 1075 N--EEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1075 d--g~~L~sgs~DG~I~iWd 1092 (1094)
+ +.+|++|+.||+|+||+
T Consensus 418 ~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 418 VDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp SSSSEEEEEEETTSCEEEEC
T ss_pred cCCceEEEEEcCCceEEEeC
Confidence 8 78999999999999995
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.6e-29 Score=281.24 Aligned_cols=264 Identities=15% Similarity=0.236 Sum_probs=201.6
Q ss_pred cccccCcEEEEeeCCCCeEEEeCCc----ceeec-cc-CCCcEEEEEEeCC--EEEEEECCCeEEEEecCCC-----cce
Q 001349 780 PLAFEMVKVLSNGHDSSADFWNHRE----LVHVD-SS-ENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS-----ILH 846 (1094)
Q Consensus 780 ~~~~d~~~l~s~s~dg~I~vWd~~~----~~~~~-~~-h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~-----~~~ 846 (1094)
.+.+.+.++++|+.|++|++|++.. ....+ .+ |.+.|.+++|+|+ +|++|+.||+|++||+.+. ...
T Consensus 19 ~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~ 98 (330)
T 2hes_X 19 SFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMD 98 (330)
T ss_dssp EEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCE
T ss_pred eeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccce
Confidence 3445556999999999999999873 23333 34 9999999999996 9999999999999998532 125
Q ss_pred eEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC-c-eEEE-EecccCccceeeeecCceEEEeeCCCeEEEE
Q 001349 847 LIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNE-E-IHCV-QVHDIKDQIQNLAVSNSILCFIPQGAGIKVH 923 (1094)
Q Consensus 847 ~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~-~-~~~~-~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~ 923 (1094)
.+..+.+|.+.|++++|+|+|++|++|+.|++|++||+... . ..++ ....|...|.++. |+|++..++++
T Consensus 99 ~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~-------~~p~~~~l~s~ 171 (330)
T 2hes_X 99 LLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI-------WHPSEALLASS 171 (330)
T ss_dssp EEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE-------ECSSSSEEEEE
T ss_pred eEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE-------ECCCCCEEEEE
Confidence 67888999999999999999999999999999999999532 2 2333 3345778888888 99999999999
Q ss_pred EeCCeEEEEc--------------CCCCceEEEEeCC----EEEEEEcCCeEEEEECCCCcee--EEeccceeecC-CCC
Q 001349 924 LRNGKTKLLN--------------SSKYPKCLALVQG----KVYCGCQDGAIQEIDLATGTFA--TIQTGHRKLLG-KAN 982 (1094)
Q Consensus 924 ~~~g~i~l~~--------------~~~~v~~l~~s~~----~l~sgs~Dg~I~iwDl~~~~~~--~~~~~~~~~~~-h~~ 982 (1094)
+.|+.+++|+ |...|.++.|+++ .+++|+.|++|++||+.++... ........+.+ |..
T Consensus 172 s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~ 251 (330)
T 2hes_X 172 SYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR 251 (330)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSS
T ss_pred cCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccccccc
Confidence 9999999996 3457889999864 5899999999999998754210 00000123333 889
Q ss_pred CeEEEEEeCCccEEEEEECCCCEEEEEECCCCe--EEEEe-c-CCC-CEEEEEEeC--C--EEEEEEcCCeEEEEECCC
Q 001349 983 PVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN--MVGSL-P-TLS-EVRAMVVSS--E--LVYLGCKGGTVEIWDQKR 1052 (1094)
Q Consensus 983 ~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~--~~~~~-~-~~~-~v~~l~~sp--d--~l~sgs~dg~I~vwd~~t 1052 (1094)
.|.+++|++++ ++++++.|| +|++||..++. ..... . |.. .|.+++|+| + +|++|+.||+|++||+.+
T Consensus 252 ~v~~v~~s~~~-~l~s~~~dg-~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 252 QVYNVAWGFNG-LIASVGADG-VLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CEEEEEECTTS-CEEEEETTS-CEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ceEEEEEcCCC-EEEEEeCCC-EEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 99999999776 678888886 99999998774 33333 2 555 899999998 4 799999999999999864
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-28 Score=283.97 Aligned_cols=266 Identities=14% Similarity=0.147 Sum_probs=224.6
Q ss_pred HhhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCC---
Q 001349 771 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS--- 843 (1094)
Q Consensus 771 ~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~--- 843 (1094)
+|...+....+.+++.+|++|+.||+|++||.. ........|...|.+++|+|+ ++++|+.|+++++|++...
T Consensus 62 gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~ 141 (354)
T 2pbi_B 62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE 141 (354)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTC
T ss_pred CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccc
Confidence 455556677788899999999999999999976 445667789999999999997 9999999999999998643
Q ss_pred -cceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEee--CCCeE
Q 001349 844 -ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP--QGAGI 920 (1094)
Q Consensus 844 -~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fsp--dg~~l 920 (1094)
.......+.+|.+.|.++.|+|++..|++++.||+|++||+.+++.. .....|...|.++. |+| +|..+
T Consensus 142 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~-~~~~~h~~~v~~~~-------~~~~~~g~~l 213 (354)
T 2pbi_B 142 NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLL-QSFHGHGADVLCLD-------LAPSETGNTF 213 (354)
T ss_dssp CSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE-EEEECCSSCEEEEE-------ECCCSSCCEE
T ss_pred cccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEE-EEEcCCCCCeEEEE-------EEeCCCCCEE
Confidence 12345667789999999999999999999999999999999998632 22335677788877 655 67899
Q ss_pred EEEEeCCeEEEEcC------------CCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEE
Q 001349 921 KVHLRNGKTKLLNS------------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHA 986 (1094)
Q Consensus 921 ~~~~~~g~i~l~~~------------~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~s 986 (1094)
++++.||.+++|+. ...|.+++|++ ..+++|+.|++|++||++++.....+.. ..+...+.+
T Consensus 214 ~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~----~~~~~~~~~ 289 (354)
T 2pbi_B 214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK----ESIIFGASS 289 (354)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC----TTCCSCEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC----CCcccceeE
Confidence 99999999999984 45689999985 5799999999999999998876643321 233457899
Q ss_pred EEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEE
Q 001349 987 LQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWD 1049 (1094)
Q Consensus 987 l~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd 1049 (1094)
++|+|++.++++++.|+ +|++||+.++..+..+. |...|++++|+|+ ++++|+.||+|+||+
T Consensus 290 ~~~s~~g~~l~~g~~d~-~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 290 VDFSLSGRLLFAGYNDY-TINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEECTTSSEEEEEETTS-CEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEeCCCCEEEEEECCC-cEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999999999999986 99999999999888887 7889999999998 899999999999996
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-28 Score=302.91 Aligned_cols=297 Identities=14% Similarity=0.170 Sum_probs=255.1
Q ss_pred hhccccccccccCcEEEEeeCCCCeEEEeCC------cceeecccCCCc-EEEEEEeC--C--EEEEEECCCeEEEEecC
Q 001349 773 RELRKYSPLAFEMVKVLSNGHDSSADFWNHR------ELVHVDSSENGK-VLSIACFR--D--KIFSGHSDGTIKVWTGR 841 (1094)
Q Consensus 773 ~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~------~~~~~~~~h~~~-V~~l~fsp--d--~LaSgs~Dg~I~vWd~~ 841 (1094)
...+....+++++.++++++ ++.|++|+.. .....+.+|.+. |++++|+| + +|++|+.||+|++||+.
T Consensus 18 ~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~ 96 (615)
T 1pgu_A 18 RNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWT 96 (615)
T ss_dssp TTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEE
T ss_pred cCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCC
Confidence 34456677889999999998 8899999987 356778899999 99999999 6 99999999999999997
Q ss_pred CC------cceeEEEecccCCCeEEEEEecCCCEEEEEeCC----CcEEEEECCCCceEEEEecccCccceeeeecCceE
Q 001349 842 GS------ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD----KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSIL 911 (1094)
Q Consensus 842 t~------~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D----gtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~ 911 (1094)
++ ....+..+..|...|.+++|+|++++|++++.| +.|++||... .......+...|.++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~---~~~~~~~~~~~v~~~~------ 167 (615)
T 1pgu_A 97 FDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN---SLGEVSGHSQRINACH------ 167 (615)
T ss_dssp EEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC---EEEECCSCSSCEEEEE------
T ss_pred CCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCC---cceeeecCCccEEEEE------
Confidence 55 446788889999999999999999999999988 7899998332 3334456778888888
Q ss_pred EEeeCCC-eEEEEEeCCeEEEEcC------------CC---CceEEEEeCC---EEEEEEcCCeEEEEECCCCceeEEec
Q 001349 912 CFIPQGA-GIKVHLRNGKTKLLNS------------SK---YPKCLALVQG---KVYCGCQDGAIQEIDLATGTFATIQT 972 (1094)
Q Consensus 912 ~fspdg~-~l~~~~~~g~i~l~~~------------~~---~v~~l~~s~~---~l~sgs~Dg~I~iwDl~~~~~~~~~~ 972 (1094)
|+|++. .+++++.++.+++|+. .. .|.++.|+++ .+++|+.||.|++||+.+++...
T Consensus 168 -~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--- 243 (615)
T 1pgu_A 168 -LKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK--- 243 (615)
T ss_dssp -ECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEE---
T ss_pred -ECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeE---
Confidence 999998 7899999999999983 34 7999999865 69999999999999999998873
Q ss_pred cceee-c---CCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCC-----CCEEEEEEeC-CEEEEEEcC
Q 001349 973 GHRKL-L---GKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTL-----SEVRAMVVSS-ELVYLGCKG 1042 (1094)
Q Consensus 973 ~~~~~-~---~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~-----~~v~~l~~sp-d~l~sgs~d 1042 (1094)
.+ . +|...|.++.|+ ++.++++++.|+ .|++||+.+++.+..+... ..+.++.++. +++++|+.|
T Consensus 244 ---~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 318 (615)
T 1pgu_A 244 ---YIEDDQEPVQGGIFALSWL-DSQKFATVGADA-TIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 318 (615)
T ss_dssp ---ECCBTTBCCCSCEEEEEES-SSSEEEEEETTS-EEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETT
T ss_pred ---EecccccccCCceEEEEEc-CCCEEEEEcCCC-cEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECC
Confidence 34 4 788999999999 999999999996 9999999999999888844 6678888853 399999999
Q ss_pred CeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1043 GTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1043 g~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
|.|++||+.+++.+..+ .+|.+.|++++| |+ +++++.||.|++|++
T Consensus 319 g~i~~~d~~~~~~~~~~-~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~ 364 (615)
T 1pgu_A 319 GTLNFYELGHDEVLKTI-SGHNKGITALTV-NP---LISGSYDGRIMEWSS 364 (615)
T ss_dssp SCEEEEETTEEEEEEEE-CCCSSCEEEEET-TT---TEEEETTSCEEETTT
T ss_pred CCEEEEECCCCcEEEEE-eCCCCCEEEEEe-cC---cEEECCCCeEEEEEc
Confidence 99999999999999888 589899999999 87 888888888888875
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=294.97 Aligned_cols=276 Identities=14% Similarity=0.137 Sum_probs=228.2
Q ss_pred HhhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCC---
Q 001349 771 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS--- 843 (1094)
Q Consensus 771 ~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~--- 843 (1094)
+|...+....+.+++.+|++|+.||+|++||.. .....+.+|...|.+++|+|+ +|++|+.|++|++||+.+.
T Consensus 64 gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~ 143 (380)
T 3iz6_a 64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADR 143 (380)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSC
T ss_pred ccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccc
Confidence 455556677788899999999999999999987 456678899999999999997 9999999999999998753
Q ss_pred --cceeEEEecccCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCceEEEEe----cccCccceeeeecCceEEEee-
Q 001349 844 --ILHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEEIHCVQV----HDIKDQIQNLAVSNSILCFIP- 915 (1094)
Q Consensus 844 --~~~~~~~l~~H~~~V~sv~fspd-g~~LaSgs~DgtI~vWdi~~~~~~~~~~----~~~~~~V~~v~~~~~~~~fsp- 915 (1094)
.......+.+|.+.|.++.|+|+ +..|++|+.|++|++||+.+++...... ..+...|.++. |.+
T Consensus 144 ~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~-------~~~~ 216 (380)
T 3iz6_a 144 DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS-------INSL 216 (380)
T ss_dssp CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEE-------ECSS
T ss_pred cCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEE-------eecC
Confidence 12345667899999999999996 5679999999999999999986333221 24566777776 655
Q ss_pred CCCeEEEEEeCCeEEEEcC-------------CCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEecccee-ecC
Q 001349 916 QGAGIKVHLRNGKTKLLNS-------------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRK-LLG 979 (1094)
Q Consensus 916 dg~~l~~~~~~g~i~l~~~-------------~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~-~~~ 979 (1094)
++..+++++.|+.+++|+. ...|.+++|++ ..+++|+.||+|++||++++.....+..... ...
T Consensus 217 ~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~ 296 (380)
T 3iz6_a 217 NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDN 296 (380)
T ss_dssp SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCC
T ss_pred CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccccc
Confidence 7899999999999999984 34688999986 4699999999999999999988765443211 122
Q ss_pred CCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEe----c-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCC
Q 001349 980 KANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL----P-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKR 1052 (1094)
Q Consensus 980 h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~----~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t 1052 (1094)
+...|++++|+|++.++++++.|| .|++||+.+++.+..+ . |...|.+++|+|+ ++++|+.||+|++|++..
T Consensus 297 ~~~~v~~~~~s~~g~~l~~g~~dg-~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 297 ELPIVTSVAFSISGRLLFAGYSNG-DCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp SSCSCSEEEECSSSSEEEEECTTS-CEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred ccCceEEEEECCCCCEEEEEECCC-CEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 334589999999999999999987 9999999999888776 2 6788999999998 899999999999999876
Q ss_pred Cc
Q 001349 1053 QI 1054 (1094)
Q Consensus 1053 ~~ 1054 (1094)
.+
T Consensus 376 ~~ 377 (380)
T 3iz6_a 376 HR 377 (380)
T ss_dssp SS
T ss_pred Cc
Confidence 54
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.2e-29 Score=287.82 Aligned_cols=289 Identities=17% Similarity=0.185 Sum_probs=228.9
Q ss_pred CCeEEEeCC--cceeecccCCCcEEEEEEeC-C--EEEEEECCCeEEEEecCCCcceeEEEe-----------cccCCCe
Q 001349 795 SSADFWNHR--ELVHVDSSENGKVLSIACFR-D--KIFSGHSDGTIKVWTGRGSILHLIQQI-----------REHTKAV 858 (1094)
Q Consensus 795 g~I~vWd~~--~~~~~~~~h~~~V~~l~fsp-d--~LaSgs~Dg~I~vWd~~t~~~~~~~~l-----------~~H~~~V 858 (1094)
+.+++|+.. .....+.+|.+.|++++|+| + +|++|+.||+|++||+.++........ .+|...|
T Consensus 23 ~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 102 (408)
T 4a11_B 23 STRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSV 102 (408)
T ss_dssp HHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCE
T ss_pred CcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcE
Confidence 345566654 56677889999999999999 5 999999999999999998743222221 2599999
Q ss_pred EEEEEec-CCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEee---CCCeEEEEEeCCeEEEEcC
Q 001349 859 TGLAILQ-SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP---QGAGIKVHLRNGKTKLLNS 934 (1094)
Q Consensus 859 ~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fsp---dg~~l~~~~~~g~i~l~~~ 934 (1094)
++++|+| ++.+|++++.||+|++||+.+++ ......+...+..+. |+| ++..++++..++.+.+|+.
T Consensus 103 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~d~ 173 (408)
T 4a11_B 103 ETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ--TADVFNFEETVYSHH-------MSPVSTKHCLVAVGTRGPKVQLCDL 173 (408)
T ss_dssp EEEEECTTCTTCEEEEETTSEEEEEETTTTE--EEEEEECSSCEEEEE-------ECSSCSSCCEEEEEESSSSEEEEES
T ss_pred EEEEEccCCCcEEEEEeCCCeEEEeeCCCCc--cceeccCCCceeeeE-------eecCCCCCcEEEEEcCCCeEEEEeC
Confidence 9999999 78899999999999999999985 333344567777777 555 5568999999999999984
Q ss_pred ------------CCCceEEEEeCC---EEEEEEcCCeEEEEECCCCcee-EEec---------cceeecCCCCCeEEEEE
Q 001349 935 ------------SKYPKCLALVQG---KVYCGCQDGAIQEIDLATGTFA-TIQT---------GHRKLLGKANPVHALQV 989 (1094)
Q Consensus 935 ------------~~~v~~l~~s~~---~l~sgs~Dg~I~iwDl~~~~~~-~~~~---------~~~~~~~h~~~V~sl~f 989 (1094)
...|.++.|+++ .+++|+.||.|++||++++... ..+. ......+|...|.+++|
T Consensus 174 ~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 253 (408)
T 4a11_B 174 KSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF 253 (408)
T ss_dssp SSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE
T ss_pred CCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEE
Confidence 457899999863 4889999999999999887622 2111 01123578899999999
Q ss_pred eCCccEEEEEECCCCEEEEEECCCCeEEEEecC-------CCCEEEEEEeC-CEEEEEEcCCeEEEEECCCCcEEEEecc
Q 001349 990 HNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT-------LSEVRAMVVSS-ELVYLGCKGGTVEIWDQKRQIRIETLQT 1061 (1094)
Q Consensus 990 s~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~-------~~~v~~l~~sp-d~l~sgs~dg~I~vwd~~t~~~~~~l~~ 1061 (1094)
+|++.++++++.|| .|++||+.+++....+.. ........... ..+++++.++.|++||+.+++.+..+ .
T Consensus 254 ~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~ 331 (408)
T 4a11_B 254 TSDGLHLLTVGTDN-RMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML-K 331 (408)
T ss_dssp CTTSSEEEEEETTS-CEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE-C
T ss_pred cCCCCEEEEecCCC-eEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee-c
Confidence 99999999999997 999999998876544431 11111122222 26777888999999999999999999 5
Q ss_pred cCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1062 GTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1062 ~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
+|.+.|++++|+|++++|++|+.||.|++||+.
T Consensus 332 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 364 (408)
T 4a11_B 332 GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPS 364 (408)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEC
T ss_pred cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCC
Confidence 899999999999999999999999999999973
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.97 E-value=8.1e-28 Score=275.01 Aligned_cols=244 Identities=19% Similarity=0.299 Sum_probs=198.2
Q ss_pred ceeecccCCCcEEEEEE-----eC-C--EEEEEECCCeEEEEecCCCc-----ceeEEEecccCCCeEEEEEecCCCEEE
Q 001349 805 LVHVDSSENGKVLSIAC-----FR-D--KIFSGHSDGTIKVWTGRGSI-----LHLIQQIREHTKAVTGLAILQSGEMLY 871 (1094)
Q Consensus 805 ~~~~~~~h~~~V~~l~f-----sp-d--~LaSgs~Dg~I~vWd~~t~~-----~~~~~~l~~H~~~V~sv~fspdg~~La 871 (1094)
....+.+|.+.|++++| ++ + +|+||+.||+|++||+.++. ..+...+.+|...|++++|+|++.+++
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~ 92 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI 92 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEE
Confidence 45678899999999999 55 4 99999999999999987542 145678899999999999999999999
Q ss_pred EEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEE
Q 001349 872 SGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCG 951 (1094)
Q Consensus 872 Sgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sg 951 (1094)
+|+.|++|++||+.+++. ......|...|.++. |+|+|+. +++|
T Consensus 93 s~s~D~~v~lwd~~~~~~-~~~~~~h~~~v~~v~-------~sp~~~~----------------------------l~s~ 136 (343)
T 2xzm_R 93 SSSWDKTLRLWDLRTGTT-YKRFVGHQSEVYSVA-------FSPDNRQ----------------------------ILSA 136 (343)
T ss_dssp EEETTSEEEEEETTSSCE-EEEEECCCSCEEEEE-------ECSSTTE----------------------------EEEE
T ss_pred EEcCCCcEEEEECCCCcE-EEEEcCCCCcEEEEE-------ECCCCCE----------------------------EEEE
Confidence 999999999999998752 222334677787777 7887774 8889
Q ss_pred EcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCc----------cEEEEEECCCCEEEEEECCCCeEEEEec
Q 001349 952 CQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL----------VYTASTSLDGAAVKMWSTSNYNMVGSLP 1021 (1094)
Q Consensus 952 s~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~----------~~las~s~Dg~~I~iwd~~~~~~~~~~~ 1021 (1094)
+.|++|++||+....... . ....+|...|.++.|+|++ .++++++.|+ +|++||. ++.....+.
T Consensus 137 ~~d~~i~~wd~~~~~~~~-~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-~i~iwd~-~~~~~~~~~ 210 (343)
T 2xzm_R 137 GAEREIKLWNILGECKFS-S---AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDG-RLKVWNT-NFQIRYTFK 210 (343)
T ss_dssp ETTSCEEEEESSSCEEEE-C---CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTS-EEEEEET-TTEEEEEEE
T ss_pred cCCCEEEEEeccCCceee-e---ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCC-EEEEEcC-CCceeEEEc
Confidence 999999999998433221 1 1234788999999999886 6899999997 9999994 556666665
Q ss_pred -CCCCEEEEEEeCC--EEEEEEcCCeEEEEECC-CCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1022 -TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQK-RQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1022 -~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~-t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
|...|.+++|+|+ ++++|+.||.|++||+. .......+. +...|++++|+|++.+++++ .|+.|++|++
T Consensus 211 ~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~--~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~ 283 (343)
T 2xzm_R 211 AHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD--AGSTINQIAFNPKLQWVAVG-TDQGVKIFNL 283 (343)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE--CSSCEEEEEECSSSCEEEEE-ESSCEEEEES
T ss_pred CccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec--CCCcEEEEEECCCCCEEEEE-CCCCEEEEEe
Confidence 7889999999998 89999999999999994 444555553 45579999999999887655 5888999997
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-28 Score=276.59 Aligned_cols=274 Identities=12% Similarity=0.184 Sum_probs=225.8
Q ss_pred cceeecccCCCcEEEEEEeCC-----EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCc
Q 001349 804 ELVHVDSSENGKVLSIACFRD-----KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKT 878 (1094)
Q Consensus 804 ~~~~~~~~h~~~V~~l~fspd-----~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~Dgt 878 (1094)
.....+.+|.+.|++++|+|+ +|++|+.||+|++||+.+........+.+|.+.|++++|+|++++|++++.||+
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 109 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT 109 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCc
Confidence 456678899999999999984 899999999999999997332444788899999999999999999999999999
Q ss_pred EEEEECCCCceEEEEecccCccceeeeecCceEEE--eeCCCeEEEEEeCCeEEEEcCC-----------CCceEEEEeC
Q 001349 879 ARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCF--IPQGAGIKVHLRNGKTKLLNSS-----------KYPKCLALVQ 945 (1094)
Q Consensus 879 I~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~f--spdg~~l~~~~~~g~i~l~~~~-----------~~v~~l~~s~ 945 (1094)
|++||+.+++. .....+...|.++. | +|++..+++++.+|.+++|+.. ..+.++.+.+
T Consensus 110 v~iwd~~~~~~--~~~~~~~~~v~~~~-------~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 180 (368)
T 3mmy_A 110 AKMWDLSSNQA--IQIAQHDAPVKTIH-------WIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY 180 (368)
T ss_dssp EEEEETTTTEE--EEEEECSSCEEEEE-------EEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET
T ss_pred EEEEEcCCCCc--eeeccccCceEEEE-------EEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC
Confidence 99999999853 33456788899988 7 8899999999999999999953 3456677778
Q ss_pred CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccE----EEEEECCCCEEEEEECCCC---eEEE
Q 001349 946 GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVY----TASTSLDGAAVKMWSTSNY---NMVG 1018 (1094)
Q Consensus 946 ~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~----las~s~Dg~~I~iwd~~~~---~~~~ 1018 (1094)
+.+++++.++.+.+||+......... ....+...+.++.+.++... +++++.|| .|++||+... ....
T Consensus 181 ~~~~~~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg-~i~i~~~~~~~~~~~~~ 255 (368)
T 3mmy_A 181 PMAVVATAERGLIVYQLENQPSEFRR----IESPLKHQHRCVAIFKDKQNKPTGFALGSIEG-RVAIHYINPPNPAKDNF 255 (368)
T ss_dssp TEEEEEEGGGCEEEEECSSSCEEEEE----CCCSCSSCEEEEEEEECTTSCEEEEEEEETTS-EEEEEESSCSCHHHHSE
T ss_pred CeeEEEeCCCcEEEEEeccccchhhh----ccccccCCCceEEEcccCCCCCCeEEEecCCC-cEEEEecCCCCccccce
Confidence 88999999999999999887654321 11223445666666544333 88888886 9999999887 4455
Q ss_pred EecCC-C------------CEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEe
Q 001349 1019 SLPTL-S------------EVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGT 1083 (1094)
Q Consensus 1019 ~~~~~-~------------~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs 1083 (1094)
.+..+ . .|.+++|+|+ ++++|+.||.|++||+.+++++..+ .+|...|++++|+|+|++|++|+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~s 334 (368)
T 3mmy_A 256 TFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS-EQLDQPISACCFNHNGNIFAYAS 334 (368)
T ss_dssp EEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC-CCCSSCEEEEEECTTSSCEEEEE
T ss_pred eeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe-cCCCCCceEEEECCCCCeEEEEe
Confidence 55532 2 6999999998 8999999999999999999999999 58999999999999999999999
Q ss_pred CCCcEEEEe
Q 001349 1084 SDGRIQAWG 1092 (1094)
Q Consensus 1084 ~DG~I~iWd 1092 (1094)
.|+..+.|+
T Consensus 335 ~d~~~~~~~ 343 (368)
T 3mmy_A 335 SYDWSKGHE 343 (368)
T ss_dssp CCCSTTCGG
T ss_pred ccccccccc
Confidence 988655443
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-28 Score=272.74 Aligned_cols=252 Identities=19% Similarity=0.275 Sum_probs=203.9
Q ss_pred eeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCc--ceeEEEecccCCCeEEEEEec--CCCEEEEEeCCCcE
Q 001349 806 VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI--LHLIQQIREHTKAVTGLAILQ--SGEMLYSGSLDKTA 879 (1094)
Q Consensus 806 ~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~--~~~~~~l~~H~~~V~sv~fsp--dg~~LaSgs~DgtI 879 (1094)
...+.+|.+.|++++|+|+ +|++|+.||+|++||+.++. ......+.+|...|++++|+| ++++|++|+.||+|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 3567899999999999996 99999999999999998652 246777889999999999999 69999999999999
Q ss_pred EEEECCCCce--------EEEEecccCccceeeeecCceEEEeeC--CCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEE
Q 001349 880 RVWSIGNEEI--------HCVQVHDIKDQIQNLAVSNSILCFIPQ--GAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVY 949 (1094)
Q Consensus 880 ~vWdi~~~~~--------~~~~~~~~~~~V~~v~~~~~~~~fspd--g~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~ 949 (1094)
++||+.+++. .......+...|.++. |+|+ +. .++
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~~----------------------------~l~ 128 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVK-------FAPAHLGL----------------------------KLA 128 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEE-------ECCGGGCS----------------------------EEE
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEE-------EcCCCCCc----------------------------EEE
Confidence 9999988631 1222223445555555 5555 43 488
Q ss_pred EEEcCCeEEEEECCCCceeEEeccc-------eeecCCCCCeEEEEEeCC---ccEEEEEECCCCEEEEEECCCCeE--E
Q 001349 950 CGCQDGAIQEIDLATGTFATIQTGH-------RKLLGKANPVHALQVHNG---LVYTASTSLDGAAVKMWSTSNYNM--V 1017 (1094)
Q Consensus 950 sgs~Dg~I~iwDl~~~~~~~~~~~~-------~~~~~h~~~V~sl~fs~~---~~~las~s~Dg~~I~iwd~~~~~~--~ 1017 (1094)
+|+.||.|++||+++++....+... ....+|...+.++.|+|+ +.++++++.++ .+.+|+...+.. +
T Consensus 129 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~ 207 (351)
T 3f3f_A 129 CLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQ-AIIYQRGKDGKLHVA 207 (351)
T ss_dssp EEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTE-EEEEEECTTSCEEEE
T ss_pred EecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCC-cEEEEccCCCceeee
Confidence 9999999999999988754322110 112367889999999997 88999999886 888888877765 5
Q ss_pred EEec-CCCCEEEEEEeCC------EEEEEEcCCeEEEEECCCC-------------------------------------
Q 001349 1018 GSLP-TLSEVRAMVVSSE------LVYLGCKGGTVEIWDQKRQ------------------------------------- 1053 (1094)
Q Consensus 1018 ~~~~-~~~~v~~l~~spd------~l~sgs~dg~I~vwd~~t~------------------------------------- 1053 (1094)
..+. |...|.+++|+|+ ++++|+.||.|++||+.++
T Consensus 208 ~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (351)
T 3f3f_A 208 AKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEK 287 (351)
T ss_dssp EECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------------------------
T ss_pred eecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccccccccee
Confidence 5555 7789999999998 5999999999999998865
Q ss_pred ---------cEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1054 ---------IRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1054 ---------~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
+.+..+ .+|.+.|++++|+|++++|++|+.||.|++||++
T Consensus 288 ~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 336 (351)
T 3f3f_A 288 AELQSNLQVELLSEH-DDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKAT 336 (351)
T ss_dssp ---CCSEEEEEEEEE-CTTSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred eeecccccccEEEEE-ecccccEEEEEEcCCCCEEEEecCCCcEEEEecC
Confidence 566666 5899999999999999999999999999999974
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-27 Score=280.57 Aligned_cols=263 Identities=23% Similarity=0.402 Sum_probs=230.0
Q ss_pred eecccCCCc-EEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001349 807 HVDSSENGK-VLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIG 885 (1094)
Q Consensus 807 ~~~~~h~~~-V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~ 885 (1094)
..+.+|.+. ++++.++++++++|+.||+|++||+.++ +.+..+.+|.+.|+++.|+ ++++++|+.||+|++||+.
T Consensus 112 ~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~ 187 (445)
T 2ovr_B 112 KVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTG--KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE 187 (445)
T ss_dssp EEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTC--CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred EEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCC--cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence 456788876 5889999899999999999999999998 7889999999999999997 6799999999999999999
Q ss_pred CCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC------------CCCceEEEEeCCEEEEEEc
Q 001349 886 NEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS------------SKYPKCLALVQGKVYCGCQ 953 (1094)
Q Consensus 886 ~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~------------~~~v~~l~~s~~~l~sgs~ 953 (1094)
+++. ......+...|.++. | ++..+++++.+|.+++|+. ...+.++.+.++.+++|+.
T Consensus 188 ~~~~-~~~~~~h~~~v~~~~-------~--~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 257 (445)
T 2ovr_B 188 TGEC-IHTLYGHTSTVRCMH-------L--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAY 257 (445)
T ss_dssp TTEE-EEEECCCSSCEEEEE-------E--ETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEET
T ss_pred cCcE-EEEECCCCCcEEEEE-------e--cCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcC
Confidence 9853 223345677787766 4 4678999999999999984 4568899998888999999
Q ss_pred CCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEe
Q 001349 954 DGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVS 1032 (1094)
Q Consensus 954 Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s 1032 (1094)
||.|++||+++++.. ..+.+|...|.++.| ++.++++++.|| .|++||+++++.+..+. |...+.++.++
T Consensus 258 dg~i~iwd~~~~~~~------~~~~~~~~~v~~~~~--~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 328 (445)
T 2ovr_B 258 DFMVKVWDPETETCL------HTLQGHTNRVYSLQF--DGIHVVSGSLDT-SIRVWDVETGNCIHTLTGHQSLTSGMELK 328 (445)
T ss_dssp TSCEEEEEGGGTEEE------EEECCCSSCEEEEEE--CSSEEEEEETTS-CEEEEETTTCCEEEEECCCCSCEEEEEEE
T ss_pred CCEEEEEECCCCcEe------EEecCCCCceEEEEE--CCCEEEEEeCCC-eEEEEECCCCCEEEEEcCCcccEEEEEEe
Confidence 999999999998877 556688999999999 677889999987 99999999999999887 67889999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCcEEEEecc--cCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1033 SELVYLGCKGGTVEIWDQKRQIRIETLQT--GTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1033 pd~l~sgs~dg~I~vwd~~t~~~~~~l~~--~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
++++++|+.||.|++||+.+++.+..+.. .|...|++++|+ +++|++|+.||+|++||+.
T Consensus 329 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 329 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETT
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECC
Confidence 99999999999999999999999999852 388899999995 6899999999999999973
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-28 Score=279.46 Aligned_cols=249 Identities=16% Similarity=0.218 Sum_probs=206.0
Q ss_pred ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecC--CCEEEEEeCCCcEE
Q 001349 805 LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS--GEMLYSGSLDKTAR 880 (1094)
Q Consensus 805 ~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspd--g~~LaSgs~DgtI~ 880 (1094)
...++.+|.+.|++++|+|+ +|++|+.||+|+|||+.++....+..+.+|.+.|++++|+++ +++|++|+.||+|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 34567899999999999996 999999999999999985544788899999999999999987 99999999999999
Q ss_pred EEECCCCceEEEE-ecccCccceeeeecCceEEEeeC--CCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeE
Q 001349 881 VWSIGNEEIHCVQ-VHDIKDQIQNLAVSNSILCFIPQ--GAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAI 957 (1094)
Q Consensus 881 vWdi~~~~~~~~~-~~~~~~~V~~v~~~~~~~~fspd--g~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I 957 (1094)
+||+.+++..... ...+...|.++. |+|+ +. .+++++.||.|
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~~----------------------------~l~~~~~d~~i 127 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQ-------WAPHEYGP----------------------------LLLVASSDGKV 127 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEE-------ECCGGGCS----------------------------EEEEEETTSEE
T ss_pred EEEcCCCceeEeeeecCCCcceEEEE-------eCCCCCCC----------------------------EEEEecCCCcE
Confidence 9999998633333 234566777776 6666 44 48899999999
Q ss_pred EEEECCCCceeEEeccceeecCCCCCeEEEEEeC-------------CccEEEEEECCCCEEEEEECCCCe----EEEEe
Q 001349 958 QEIDLATGTFATIQTGHRKLLGKANPVHALQVHN-------------GLVYTASTSLDGAAVKMWSTSNYN----MVGSL 1020 (1094)
Q Consensus 958 ~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~-------------~~~~las~s~Dg~~I~iwd~~~~~----~~~~~ 1020 (1094)
++||+.++..... ..+.+|...|.+++|+| ++.++++++.|| .|++||++++. ....+
T Consensus 128 ~v~d~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~ 202 (379)
T 3jrp_A 128 SVVEFKENGTTSP----IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN-LVKIWKYNSDAQTYVLESTL 202 (379)
T ss_dssp EEEECCTTSCCCE----EEEECCTTCEEEEEECCCC----------CTTCEEEEEETTS-CEEEEEEETTTTEEEEEEEE
T ss_pred EEEecCCCCceee----EEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCC-eEEEEEecCCCcceeeEEEE
Confidence 9999998754322 34567899999999999 689999999997 99999998754 34455
Q ss_pred c-CCCCEEEEEEeCC-----EEEEEEcCCeEEEEECCCCc---EEEEe-cccCCcceEEEEEcCCCCEEEEEeCCCcEEE
Q 001349 1021 P-TLSEVRAMVVSSE-----LVYLGCKGGTVEIWDQKRQI---RIETL-QTGTSGKVQCMALDDNEEFLVIGTSDGRIQA 1090 (1094)
Q Consensus 1021 ~-~~~~v~~l~~spd-----~l~sgs~dg~I~vwd~~t~~---~~~~l-~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~i 1090 (1094)
. |...|.+++|+|+ ++++++.||.|++||+.++. ....+ ...|...|++++|+|+|++|++++.||.|++
T Consensus 203 ~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~i 282 (379)
T 3jrp_A 203 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 282 (379)
T ss_dssp CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEE
T ss_pred ecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEE
Confidence 5 6788999999986 79999999999999998864 22222 1247889999999999999999999999999
Q ss_pred EeC
Q 001349 1091 WGL 1093 (1094)
Q Consensus 1091 Wdl 1093 (1094)
|++
T Consensus 283 w~~ 285 (379)
T 3jrp_A 283 WKE 285 (379)
T ss_dssp EEE
T ss_pred EeC
Confidence 986
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=271.94 Aligned_cols=263 Identities=12% Similarity=0.144 Sum_probs=226.2
Q ss_pred eecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCc-ceeEEEecccCCCeEEEEEecCCC-EEEEEeCCCcEEEE
Q 001349 807 HVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI-LHLIQQIREHTKAVTGLAILQSGE-MLYSGSLDKTARVW 882 (1094)
Q Consensus 807 ~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~-~~~~~~l~~H~~~V~sv~fspdg~-~LaSgs~DgtI~vW 882 (1094)
....+|.+.|++++|+|+ +|++|+.||+|++||+.++. ......+.+|...|++++|+|+++ +|++|+.||+|++|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence 345689999999999986 99999999999999998873 113455668999999999999999 99999999999999
Q ss_pred EC-CCCceEEEEecc--cCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC--------------------CCCce
Q 001349 883 SI-GNEEIHCVQVHD--IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS--------------------SKYPK 939 (1094)
Q Consensus 883 di-~~~~~~~~~~~~--~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~--------------------~~~v~ 939 (1094)
|+ .+++. ..... +...|.++. |+| +..+++++.++.+++|+. ...+.
T Consensus 85 d~~~~~~~--~~~~~~~~~~~v~~l~-------~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 154 (342)
T 1yfq_A 85 DLIGSPSF--QALTNNEANLGICRIC-------KYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIF 154 (342)
T ss_dssp CSSSSSSE--EECBSCCCCSCEEEEE-------EET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEE
T ss_pred EeccCCce--EeccccCCCCceEEEE-------eCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceE
Confidence 99 88754 33344 788888888 899 999999999999999973 23589
Q ss_pred EEEEeCCEEEEEEcCCeEEEEECCC-CceeEEeccceeecCCCCCeEEEEEeC-CccEEEEEECCCCEEEEEECCCC---
Q 001349 940 CLALVQGKVYCGCQDGAIQEIDLAT-GTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDGAAVKMWSTSNY--- 1014 (1094)
Q Consensus 940 ~l~~s~~~l~sgs~Dg~I~iwDl~~-~~~~~~~~~~~~~~~h~~~V~sl~fs~-~~~~las~s~Dg~~I~iwd~~~~--- 1014 (1094)
++.++++.+++++.||.|++||+++ +..... .....|...|.+++|+| ++.++++++.|| .|++||+...
T Consensus 155 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg-~i~i~~~~~~~~~ 229 (342)
T 1yfq_A 155 TMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT----IEESGLKYQIRDVALLPKEQEGYACSSIDG-RVAVEFFDDQGDD 229 (342)
T ss_dssp EEEECSSEEEEEESTTEEEEEESSCCTTCCCE----EEECSCSSCEEEEEECSGGGCEEEEEETTS-EEEEEECCTTCCS
T ss_pred EEEecCCcEEEEeCCCeEEEEECCccccccce----eeecCCCCceeEEEECCCCCCEEEEEecCC-cEEEEEEcCCCcc
Confidence 9999998899999999999999998 553211 23456778999999999 999999999987 9999999876
Q ss_pred ---eEEEEec-CCC---------CEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccC-CcceEEEEEcCCCCE
Q 001349 1015 ---NMVGSLP-TLS---------EVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGT-SGKVQCMALDDNEEF 1078 (1094)
Q Consensus 1015 ---~~~~~~~-~~~---------~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h-~~~I~~l~~Spdg~~ 1078 (1094)
+....+. |.. .|.+++|+|+ ++++|+.||.|++||+.+++.+..+. +| .+.|++++ |++++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~h~~~v~~~~--~~~~~ 306 (342)
T 1yfq_A 230 YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA-KFNEDSVVKIA--CSDNI 306 (342)
T ss_dssp TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-CCSSSEEEEEE--ECSSE
T ss_pred cccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhh-cccCCCceEec--CCCCe
Confidence 6666666 433 8999999997 79999999999999999999999985 66 99999999 99999
Q ss_pred EEEEeCCCc
Q 001349 1079 LVIGTSDGR 1087 (1094)
Q Consensus 1079 L~sgs~DG~ 1087 (1094)
|++|+.||+
T Consensus 307 l~s~s~Dg~ 315 (342)
T 1yfq_A 307 LCLATSDDT 315 (342)
T ss_dssp EEEEEECTH
T ss_pred EEEEecCCc
Confidence 999999998
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-28 Score=288.58 Aligned_cols=278 Identities=12% Similarity=0.193 Sum_probs=214.3
Q ss_pred hccccccccccCcEEEEeeCCCCeEEEeCCc-------------ceeecccCC------------CcEEEEEEeCC----
Q 001349 774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHRE-------------LVHVDSSEN------------GKVLSIACFRD---- 824 (1094)
Q Consensus 774 ~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~-------------~~~~~~~h~------------~~V~~l~fspd---- 824 (1094)
..+....+++++.+|++|+.||.|+||+... ....+.+|. +.|++++|+|+
T Consensus 29 ~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~ 108 (447)
T 3dw8_B 29 DIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAA 108 (447)
T ss_dssp GSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSS
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcc
Confidence 3455677888999999999999999999873 356778898 88999999985
Q ss_pred EEEEEECCCeEEEEecCCCcce-------------------------------------eEEE-ecccCCCeEEEEEecC
Q 001349 825 KIFSGHSDGTIKVWTGRGSILH-------------------------------------LIQQ-IREHTKAVTGLAILQS 866 (1094)
Q Consensus 825 ~LaSgs~Dg~I~vWd~~t~~~~-------------------------------------~~~~-l~~H~~~V~sv~fspd 866 (1094)
.|++|+.||+|++||+.++... +... ..+|...|++++|+|+
T Consensus 109 ~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 188 (447)
T 3dw8_B 109 QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSD 188 (447)
T ss_dssp EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTT
T ss_pred eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCC
Confidence 7999999999999999864210 1112 3689999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEE--------ecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCc
Q 001349 867 GEMLYSGSLDKTARVWSIGNEEIHCVQ--------VHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYP 938 (1094)
Q Consensus 867 g~~LaSgs~DgtI~vWdi~~~~~~~~~--------~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v 938 (1094)
+++|++| .||+|++||+.++. .... ...+...|.++. |+|+|.
T Consensus 189 ~~~l~s~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~-------~~p~~~-------------------- 239 (447)
T 3dw8_B 189 YETYLSA-DDLRINLWHLEITD-RSFNIVDIKPANMEELTEVITAAE-------FHPNSC-------------------- 239 (447)
T ss_dssp SSEEEEE-CSSEEEEEETTEEE-EEEEEEECCCSSGGGCCCCEEEEE-------ECSSCT--------------------
T ss_pred CCEEEEe-CCCeEEEEECCCCC-ceeeeeecccccccccCcceEEEE-------ECCCCC--------------------
Confidence 9999998 79999999998532 2222 223445555555 566551
Q ss_pred eEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCC------------CeEEEEEeCCccEEEEEECCCCEE
Q 001349 939 KCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKAN------------PVHALQVHNGLVYTASTSLDGAAV 1006 (1094)
Q Consensus 939 ~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~------------~V~sl~fs~~~~~las~s~Dg~~I 1006 (1094)
..+++|+.||.|++||++++..... ....+.+|.. .|.+++|+|++.++++++. + .|
T Consensus 240 -------~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~-~v 308 (447)
T 3dw8_B 240 -------NTFVYSSSKGTIRLCDMRASALCDR--HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-L-SV 308 (447)
T ss_dssp -------TEEEEEETTSCEEEEETTTCSSSCT--TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-S-EE
T ss_pred -------cEEEEEeCCCeEEEEECcCCccccc--eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-C-eE
Confidence 1489999999999999999875100 0033445544 8999999999999999887 5 99
Q ss_pred EEEECCC-CeEEEEecCCCC----------------EEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEec-------
Q 001349 1007 KMWSTSN-YNMVGSLPTLSE----------------VRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQ------- 1060 (1094)
Q Consensus 1007 ~iwd~~~-~~~~~~~~~~~~----------------v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~------- 1060 (1094)
++||+++ ++++..+..+.. +..++|+|+ ++++|+.||.|++||+.+++.+....
T Consensus 309 ~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~ 388 (447)
T 3dw8_B 309 KVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKP 388 (447)
T ss_dssp EEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCT
T ss_pred EEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeeccccccc
Confidence 9999997 888877774433 334899998 89999999999999999988764221
Q ss_pred ------------------------ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1061 ------------------------TGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1061 ------------------------~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
..+...|..++|+|++++|++++.++ +++|.
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 389 RTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp TCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred ccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeec
Confidence 02345789999999999999998876 77775
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=289.33 Aligned_cols=277 Identities=14% Similarity=0.181 Sum_probs=217.3
Q ss_pred ccccccccCcEEEEeeCCCCeEEEeCC-cceeec-ccCCCcEEEEEEeC-C--EEEEEECCCeEEEEecCC---Cc-cee
Q 001349 777 KYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVD-SSENGKVLSIACFR-D--KIFSGHSDGTIKVWTGRG---SI-LHL 847 (1094)
Q Consensus 777 ~~~~~~~d~~~l~s~s~dg~I~vWd~~-~~~~~~-~~h~~~V~~l~fsp-d--~LaSgs~Dg~I~vWd~~t---~~-~~~ 847 (1094)
.+..+.+++..+++++ .|+.. ..+..+ .+|.+.|++++|+| + +|++|+.||+|+|||+.+ +. ...
T Consensus 31 ~~~~f~~~~~~~~~~~------~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 104 (437)
T 3gre_A 31 DYKEFGPIQEIVRSPN------MGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSS 104 (437)
T ss_dssp GCGGGCCCCCCCCCCC------GGGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSC
T ss_pred chhhcCCccccccccc------cccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccce
Confidence 3455677777777655 38766 445556 88999999999999 6 999999999999999876 42 122
Q ss_pred EEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC---CCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEE
Q 001349 848 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIG---NEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHL 924 (1094)
Q Consensus 848 ~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~---~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~ 924 (1094)
...+ +|.+.|++++|+|++++|++|+.||+|++||+. +++....... ..+..+. |+|++
T Consensus 105 ~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~---~~i~~~~-------~~~~~------- 166 (437)
T 3gre_A 105 SLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNC---ECIRKIN-------LKNFG------- 166 (437)
T ss_dssp SEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEE---EEEEEEE-------GGGGS-------
T ss_pred eeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeecccc---ceeEEEE-------ccCcc-------
Confidence 3343 599999999999999999999999999999995 4432111111 1344443 33321
Q ss_pred eCCeEEEEcCCCCceEEEEe----CCEEEEEEcCCeEEEEECCCCceeEEeccceeecC--CCCCeEEEEEeCCccEEEE
Q 001349 925 RNGKTKLLNSSKYPKCLALV----QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLG--KANPVHALQVHNGLVYTAS 998 (1094)
Q Consensus 925 ~~g~i~l~~~~~~v~~l~~s----~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~--h~~~V~sl~fs~~~~~las 998 (1094)
+...+.++.+. +..+++|+.||.|++||+++++... .+.+ |...|++++|+|++.++++
T Consensus 167 ---------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~------~~~~~~h~~~v~~~~~s~~~~~l~s 231 (437)
T 3gre_A 167 ---------KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQ------IIENSPRHGAVSSICIDEECCVLIL 231 (437)
T ss_dssp ---------SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEE------EEECCGGGCCEEEEEECTTSCEEEE
T ss_pred ---------cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeE------EEccCCCCCceEEEEECCCCCEEEE
Confidence 12334444432 3469999999999999999998874 4444 7889999999999999999
Q ss_pred EECCCCEEEEEECCCCeEEEEec--CCCCEEEEEEeCC------EEEEEEcCCeEEEEECCCCcEEEEeccc--------
Q 001349 999 TSLDGAAVKMWSTSNYNMVGSLP--TLSEVRAMVVSSE------LVYLGCKGGTVEIWDQKRQIRIETLQTG-------- 1062 (1094)
Q Consensus 999 ~s~Dg~~I~iwd~~~~~~~~~~~--~~~~v~~l~~spd------~l~sgs~dg~I~vwd~~t~~~~~~l~~~-------- 1062 (1094)
++.|| .|++||+++++++..+. |...|.+++|+|. ++++|+.||.|++||+.+++.+..+...
T Consensus 232 ~~~dg-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 310 (437)
T 3gre_A 232 GTTRG-IIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEH 310 (437)
T ss_dssp EETTS-CEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGG
T ss_pred EcCCC-eEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccce
Confidence 99997 99999999999999874 6778999977764 7999999999999999999988887411
Q ss_pred -----------------CCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1063 -----------------TSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1063 -----------------h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
|...|++++|+ ++++|++|+.||+|++||+.
T Consensus 311 ~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~ 358 (437)
T 3gre_A 311 FLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLN 358 (437)
T ss_dssp GSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETT
T ss_pred ecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECC
Confidence 56679999999 78999999999999999973
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-27 Score=276.99 Aligned_cols=236 Identities=22% Similarity=0.401 Sum_probs=196.4
Q ss_pred cCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCC------------------CeEEEEEecCCCEE
Q 001349 811 SENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTK------------------AVTGLAILQSGEML 870 (1094)
Q Consensus 811 ~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~------------------~V~sv~fspdg~~L 870 (1094)
+|.+.|.+++|+|+ +|++|+ |+++++|++.++ ..+..+..|.. .|++++|+|+|++|
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDG--SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTC--CEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCC--CEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence 69999999999997 888876 789999999998 56666665532 49999999999999
Q ss_pred EEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEE
Q 001349 871 YSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYC 950 (1094)
Q Consensus 871 aSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~s 950 (1094)
++|+.||+|++||+.+++. ......|...|.++. |+|+|. .+++
T Consensus 139 ~s~~~d~~i~iwd~~~~~~-~~~~~~h~~~v~~~~-------~~p~~~----------------------------~l~s 182 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRKI-VMILQGHEQDIYSLD-------YFPSGD----------------------------KLVS 182 (393)
T ss_dssp EEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEE-------ECTTSS----------------------------EEEE
T ss_pred EEEcCCCeEEEEECCCCcE-EEEEccCCCCEEEEE-------EcCCCC----------------------------EEEE
Confidence 9999999999999998752 223345667777776 777776 4889
Q ss_pred EEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeC-CccEEEEEECCCCEEEEEECCCCeEEEEe--------c
Q 001349 951 GCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDGAAVKMWSTSNYNMVGSL--------P 1021 (1094)
Q Consensus 951 gs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~-~~~~las~s~Dg~~I~iwd~~~~~~~~~~--------~ 1021 (1094)
|+.|++|++||+++++....+ .+...+.+++|+| ++.++++++.|+ .|++||++++..+..+ .
T Consensus 183 ~s~d~~v~iwd~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~s~d~-~v~iwd~~~~~~~~~~~~~~~~~~~ 254 (393)
T 1erj_A 183 GSGDRTVRIWDLRTGQCSLTL-------SIEDGVTTVAVSPGDGKYIAAGSLDR-AVRVWDSETGFLVERLDSENESGTG 254 (393)
T ss_dssp EETTSEEEEEETTTTEEEEEE-------ECSSCEEEEEECSTTCCEEEEEETTS-CEEEEETTTCCEEEEEC------CC
T ss_pred ecCCCcEEEEECCCCeeEEEE-------EcCCCcEEEEEECCCCCEEEEEcCCC-cEEEEECCCCcEEEeecccccCCCC
Confidence 999999999999998876432 2456799999998 899999999997 9999999999887776 2
Q ss_pred CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCC------------cEEEEecccCCcceEEEEEcCCCCEEEEEeCCCc
Q 001349 1022 TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQ------------IRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGR 1087 (1094)
Q Consensus 1022 ~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~------------~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~ 1087 (1094)
|...|.+++|+|+ ++++|+.||+|++||+.+. .+...+ .+|...|.+++|+|++.+|++|+.||+
T Consensus 255 h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~sgs~D~~ 333 (393)
T 1erj_A 255 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY-IGHKDFVLSVATTQNDEYILSGSKDRG 333 (393)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEE-ECCSSCEEEEEECGGGCEEEEEETTSE
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEE-ecccCcEEEEEECCCCCEEEEEeCCCe
Confidence 6678999999998 8999999999999998753 344556 589999999999999999999999999
Q ss_pred EEEEeCC
Q 001349 1088 IQAWGLS 1094 (1094)
Q Consensus 1088 I~iWdls 1094 (1094)
|++||+.
T Consensus 334 v~iwd~~ 340 (393)
T 1erj_A 334 VLFWDKK 340 (393)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 9999963
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=287.71 Aligned_cols=272 Identities=11% Similarity=0.150 Sum_probs=228.6
Q ss_pred CcEEEEEEeCC---EEEEE----------ECCCeEEEEecCCCcce-eEEEecccCCCeEEEEEecCCCEEEEEeCCCcE
Q 001349 814 GKVLSIACFRD---KIFSG----------HSDGTIKVWTGRGSILH-LIQQIREHTKAVTGLAILQSGEMLYSGSLDKTA 879 (1094)
Q Consensus 814 ~~V~~l~fspd---~LaSg----------s~Dg~I~vWd~~t~~~~-~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI 879 (1094)
..|.+++|+|+ ++++| +.||+|++||+.++... .+..+ .|...|++++|+|++++|++|+.||+|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v 91 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSL 91 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeE
Confidence 45788999986 89999 89999999999987322 33333 589999999999999999999999999
Q ss_pred EEEECCC---CceEEEEecccCccceeeeecCceEEEeeC-CCeEEEEEeCCeEEEEcCC--------------------
Q 001349 880 RVWSIGN---EEIHCVQVHDIKDQIQNLAVSNSILCFIPQ-GAGIKVHLRNGKTKLLNSS-------------------- 935 (1094)
Q Consensus 880 ~vWdi~~---~~~~~~~~~~~~~~V~~v~~~~~~~~fspd-g~~l~~~~~~g~i~l~~~~-------------------- 935 (1094)
++||+.+ +.........+...|.++. |+|+ +..+++++.++.+++|+..
T Consensus 92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~-------~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 164 (416)
T 2pm9_A 92 ELYSTNEANNAINSMARFSNHSSSVKTVK-------FNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSS 164 (416)
T ss_dssp EEECCSSTTSCCCEEEECCCSSSCCCEEE-------ECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCS
T ss_pred EEeecccccccccchhhccCCccceEEEE-------EcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCC
Confidence 9999987 2223444456788899888 9998 8899999999999999742
Q ss_pred -CCceEEEEeCC---EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCc-cEEEEEECCC--CEEEE
Q 001349 936 -KYPKCLALVQG---KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL-VYTASTSLDG--AAVKM 1008 (1094)
Q Consensus 936 -~~v~~l~~s~~---~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~-~~las~s~Dg--~~I~i 1008 (1094)
..+.++.|+++ .+++++.||.|++||+++++....+.......+|...|.+++|+|++ .++++++.|+ +.|++
T Consensus 165 ~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~ 244 (416)
T 2pm9_A 165 VDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILI 244 (416)
T ss_dssp SCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCE
T ss_pred CCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEE
Confidence 34778999853 69999999999999999998876554443344558899999999986 6788887763 18999
Q ss_pred EECCCC-eEEEEec--CCCCEEEEEEeC-C--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCC-CEEEE
Q 001349 1009 WSTSNY-NMVGSLP--TLSEVRAMVVSS-E--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNE-EFLVI 1081 (1094)
Q Consensus 1009 wd~~~~-~~~~~~~--~~~~v~~l~~sp-d--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg-~~L~s 1081 (1094)
||++++ .+...+. |...|.+++|+| + ++++++.||.|++||+.+++.+..+ .+|.+.|++++|+|++ .+|++
T Consensus 245 ~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~l~s 323 (416)
T 2pm9_A 245 WDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQF-PARGNWCFKTKFAPEAPDLFAC 323 (416)
T ss_dssp EETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEE-ECSSSCCCCEEECTTCTTEEEE
T ss_pred EeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceee-cCCCCceEEEEECCCCCCEEEE
Confidence 999986 5666665 778999999998 5 8999999999999999999999999 5899999999999999 89999
Q ss_pred EeCCCcEEEEeCC
Q 001349 1082 GTSDGRIQAWGLS 1094 (1094)
Q Consensus 1082 gs~DG~I~iWdls 1094 (1094)
++.||+|++||+.
T Consensus 324 ~~~d~~i~iw~~~ 336 (416)
T 2pm9_A 324 ASFDNKIEVQTLQ 336 (416)
T ss_dssp CCSSSEEEEEESC
T ss_pred EecCCcEEEEEcc
Confidence 9999999999974
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-28 Score=282.11 Aligned_cols=263 Identities=18% Similarity=0.198 Sum_probs=212.8
Q ss_pred EEEEeeCCCCeEEEeCCc------ceeecccCCCcEEEEEEeC-C--EEEEEECCCeEEEEecCCCcc-----eeEEEec
Q 001349 787 KVLSNGHDSSADFWNHRE------LVHVDSSENGKVLSIACFR-D--KIFSGHSDGTIKVWTGRGSIL-----HLIQQIR 852 (1094)
Q Consensus 787 ~l~s~s~dg~I~vWd~~~------~~~~~~~h~~~V~~l~fsp-d--~LaSgs~Dg~I~vWd~~t~~~-----~~~~~l~ 852 (1094)
.+++++.||.|+||++.. ....+.+|.+.|++++|+| + +|++|+.||+|++||+.++.. ..+..+.
T Consensus 49 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~ 128 (402)
T 2aq5_A 49 LICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE 128 (402)
T ss_dssp EEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE
T ss_pred EEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEec
Confidence 344578999999999862 3445778999999999998 5 999999999999999988733 4577888
Q ss_pred ccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCceEEEEe-cccCccceeeeecCceEEEeeCCCeEEEEEeCCeEE
Q 001349 853 EHTKAVTGLAILQSG-EMLYSGSLDKTARVWSIGNEEIHCVQV-HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK 930 (1094)
Q Consensus 853 ~H~~~V~sv~fspdg-~~LaSgs~DgtI~vWdi~~~~~~~~~~-~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~ 930 (1094)
+|...|++++|+|++ ++|++|+.||+|++||+.+++...... ..+...|.++. |+|+|+.
T Consensus 129 ~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~----------- 190 (402)
T 2aq5_A 129 GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVD-------WSRDGAL----------- 190 (402)
T ss_dssp CCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEE-------ECTTSSC-----------
T ss_pred CCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEE-------ECCCCCE-----------
Confidence 999999999999998 699999999999999999985332221 45677777777 7777764
Q ss_pred EEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceee-cCCCCC-eEEEEEeCCccEEEEE---ECCCCE
Q 001349 931 LLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKL-LGKANP-VHALQVHNGLVYTAST---SLDGAA 1005 (1094)
Q Consensus 931 l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~-~~h~~~-V~sl~fs~~~~~las~---s~Dg~~ 1005 (1094)
+++|+.||.|++||+++++... .+ .+|... +.++.|++++.+++++ +.|+ .
T Consensus 191 -----------------l~~~~~d~~i~iwd~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~-~ 246 (402)
T 2aq5_A 191 -----------------ICTSCRDKRVRVIEPRKGTVVA------EKDRPHEGTRPVHAVFVSEGKILTTGFSRMSER-Q 246 (402)
T ss_dssp -----------------EEEEETTSEEEEEETTTTEEEE------EEECSSCSSSCCEEEECSTTEEEEEEECTTCCE-E
T ss_pred -----------------EEEEecCCcEEEEeCCCCceee------eeccCCCCCcceEEEEcCCCcEEEEeccCCCCc-e
Confidence 8889999999999999988773 34 466655 8999999999999998 5665 9
Q ss_pred EEEEECCCCeE---EEEecCCCCEEEEEEeCC--EEE-EEEcCCeEEEEECCCCcE-EEEec-ccCCcceEEEEEcCCCC
Q 001349 1006 VKMWSTSNYNM---VGSLPTLSEVRAMVVSSE--LVY-LGCKGGTVEIWDQKRQIR-IETLQ-TGTSGKVQCMALDDNEE 1077 (1094)
Q Consensus 1006 I~iwd~~~~~~---~~~~~~~~~v~~l~~spd--~l~-sgs~dg~I~vwd~~t~~~-~~~l~-~~h~~~I~~l~~Spdg~ 1077 (1094)
|++||++++.. ...+.+...+.+++|+|+ +++ +|+.||.|++||+.+++. +..+. ..|.+.|.+++|+|++.
T Consensus 247 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~ 326 (402)
T 2aq5_A 247 VALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRG 326 (402)
T ss_dssp EEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGG
T ss_pred EEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccc
Confidence 99999998654 334457788999999998 565 566899999999999873 33332 12568999999999998
Q ss_pred EEEEEeCCCcEEEEeC
Q 001349 1078 FLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1078 ~L~sgs~DG~I~iWdl 1093 (1094)
++++ .++.+++|++
T Consensus 327 ~~~s--~~~~~~~~~l 340 (402)
T 2aq5_A 327 LEVN--KCEIARFYKL 340 (402)
T ss_dssp SCGG--GTEEEEEEEE
T ss_pred ccee--cceeEEEEEc
Confidence 8764 5779999986
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=268.37 Aligned_cols=255 Identities=15% Similarity=0.195 Sum_probs=199.1
Q ss_pred hhhccccccccccCcEEEEeeCCCCeEEEeCC----cceeecccCCCcEEEEEEeC----CEEEEEECCCeEEEEecCCC
Q 001349 772 LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFR----DKIFSGHSDGTIKVWTGRGS 843 (1094)
Q Consensus 772 ~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~----~~~~~~~~h~~~V~~l~fsp----d~LaSgs~Dg~I~vWd~~t~ 843 (1094)
|...+....|++++.+|++|+.|++|++||.. .....+.+|.+.|++++|++ ++|+||+.||+|++||+.++
T Consensus 8 h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~ 87 (297)
T 2pm7_B 8 HNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENG 87 (297)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSS
T ss_pred CcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCC
Confidence 44455567788899999999999999999985 35678889999999999975 39999999999999999987
Q ss_pred cceeEEEecccCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCc-eEEEEecccCccceeeeecCceEEEeeCCCeE
Q 001349 844 ILHLIQQIREHTKAVTGLAILQS--GEMLYSGSLDKTARVWSIGNEE-IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGI 920 (1094)
Q Consensus 844 ~~~~~~~l~~H~~~V~sv~fspd--g~~LaSgs~DgtI~vWdi~~~~-~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l 920 (1094)
....+..+.+|...|.+++|+|+ |.+|++|+.||+|++||++++. ........+...|.++. |+|++..-
T Consensus 88 ~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~-------~~p~~~~~ 160 (297)
T 2pm7_B 88 RWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS-------WAPATIEE 160 (297)
T ss_dssp CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEE-------ECCCC---
T ss_pred ceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEe-------ecCCcccc
Confidence 55567788899999999999997 8999999999999999998763 22233345667788877 66654210
Q ss_pred EEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCc---cEEE
Q 001349 921 KVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL---VYTA 997 (1094)
Q Consensus 921 ~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~---~~la 997 (1094)
.+. .........+++|+.|++|++||++++....... ..+.+|...|.+++|+|++ .+++
T Consensus 161 -----~~~----------~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~--~~l~~H~~~V~~v~~sp~~~~~~~la 223 (297)
T 2pm7_B 161 -----DGE----------HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE--STLEGHSDWVRDVAWSPTVLLRSYMA 223 (297)
T ss_dssp ------------------------CCEEEEEETTSCEEEEEEETTTTEEEEE--EEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred -----ccc----------CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEE--EEecCCCCceEEEEECCCCCCceEEE
Confidence 000 0000012469999999999999998776321111 4678899999999999984 8999
Q ss_pred EEECCCCEEEEEECCCCe---EEEEe---cCCCCEEEEEEeCC--EEEEEEcCCeEEEEECC
Q 001349 998 STSLDGAAVKMWSTSNYN---MVGSL---PTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQK 1051 (1094)
Q Consensus 998 s~s~Dg~~I~iwd~~~~~---~~~~~---~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~ 1051 (1094)
+++.|+ +|++||+.+.. ....+ .+...|.+++|+|+ +|++++.||+|++|+..
T Consensus 224 s~s~D~-~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 224 SVSQDR-TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEETTS-CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEECCC-cEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 999996 99999997642 22233 25678999999998 89999999999999976
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=273.97 Aligned_cols=246 Identities=15% Similarity=0.160 Sum_probs=210.5
Q ss_pred ecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001349 808 VDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIG 885 (1094)
Q Consensus 808 ~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~ 885 (1094)
.+..|.++|++++|+|+ +|++|+.||.|++||+.++....+..+.+|...|++++|+|++++|++++.||+|++||+.
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 34568999999999997 9999999999999999998444889999999999999999999999999999999999998
Q ss_pred CCceE-EEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCC
Q 001349 886 NEEIH-CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT 964 (1094)
Q Consensus 886 ~~~~~-~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~ 964 (1094)
+++.. ......+...|.++. |+|+++ .+++|+.||.|++||+..
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~-------~~~~~~----------------------------~l~~~~~d~~v~i~d~~~ 127 (372)
T 1k8k_C 83 GRTWKPTLVILRINRAARCVR-------WAPNEK----------------------------KFAVGSGSRVISICYFEQ 127 (372)
T ss_dssp TTEEEEEEECCCCSSCEEEEE-------ECTTSS----------------------------EEEEEETTSSEEEEEEET
T ss_pred CCeeeeeEEeecCCCceeEEE-------ECCCCC----------------------------EEEEEeCCCEEEEEEecC
Confidence 87533 233345666777776 777766 388899999999999998
Q ss_pred CceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEEC------------------CCCeEEEEec-CCCC
Q 001349 965 GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWST------------------SNYNMVGSLP-TLSE 1025 (1094)
Q Consensus 965 ~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~------------------~~~~~~~~~~-~~~~ 1025 (1094)
+....... ....+|...|.+++|+|++.++++++.|| .|++||+ ..+..+..+. |...
T Consensus 128 ~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (372)
T 1k8k_C 128 ENDWWVCK--HIKKPIRSTVLSLDWHPNSVLLAAGSCDF-KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW 204 (372)
T ss_dssp TTTEEEEE--EECTTCCSCEEEEEECTTSSEEEEEETTS-CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC
T ss_pred CCcceeee--eeecccCCCeeEEEEcCCCCEEEEEcCCC-CEEEEEcccccccccccccccccccchhhheEecCCCCCe
Confidence 77422111 23357889999999999999999999987 9999995 4677888886 7788
Q ss_pred EEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1026 VRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1026 v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
+.+++|+|+ ++++++.||.|++||+.+++.+..+ .+|...|++++|+|++.+|++| .||.|++|++
T Consensus 205 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~ 272 (372)
T 1k8k_C 205 VHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL-ASETLPLLAVTFITESSLVAAG-HDCFPVLFTY 272 (372)
T ss_dssp EEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE-ECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEE-ccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEc
Confidence 999999998 8999999999999999999999999 4888899999999999988887 8999999986
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-26 Score=262.69 Aligned_cols=260 Identities=14% Similarity=0.179 Sum_probs=224.1
Q ss_pred hccccccccccCcEEEEeeCCCCeEEEeCCc-----ceeecc--cCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCc
Q 001349 774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHRE-----LVHVDS--SENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI 844 (1094)
Q Consensus 774 ~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~-----~~~~~~--~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~ 844 (1094)
..+....+.+++.++++++ ||.|++|+... ...... +|...|.+++|+|+ +|++|+.||.|++||+.++.
T Consensus 52 ~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 130 (337)
T 1gxr_A 52 EVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT 130 (337)
T ss_dssp SCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-
T ss_pred CceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC
Confidence 3445667788999999999 99999999872 122222 79999999999996 99999999999999999885
Q ss_pred ceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEE
Q 001349 845 LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHL 924 (1094)
Q Consensus 845 ~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~ 924 (1094)
......+.+|...|++++|+|+++++++++.||.|++||+.+++. ......+...+.++. |+|+++.+++++
T Consensus 131 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~-~~~~~~~~~~i~~~~-------~~~~~~~l~~~~ 202 (337)
T 1gxr_A 131 PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL-VRQFQGHTDGASCID-------ISNDGTKLWTGG 202 (337)
T ss_dssp -EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEE-------ECTTSSEEEEEE
T ss_pred cceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCce-eeeeecccCceEEEE-------ECCCCCEEEEEe
Confidence 457788889999999999999999999999999999999998752 223334677888887 999999999999
Q ss_pred eCCeEEEEcC-----------CCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeC
Q 001349 925 RNGKTKLLNS-----------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN 991 (1094)
Q Consensus 925 ~~g~i~l~~~-----------~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~ 991 (1094)
.+|.+++|+. ...+.++.+++ ..+++++.||.|++||+.++... .+..|...|.++.|+|
T Consensus 203 ~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-------~~~~~~~~v~~~~~~~ 275 (337)
T 1gxr_A 203 LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-------QLHLHESCVLSLKFAY 275 (337)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-------EECCCSSCEEEEEECT
T ss_pred cCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-------EEcCCccceeEEEECC
Confidence 9999999985 35688888875 46999999999999999988753 4567889999999999
Q ss_pred CccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEEC
Q 001349 992 GLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQ 1050 (1094)
Q Consensus 992 ~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~ 1050 (1094)
++.++++++.|| .|++||+.+++.+....+...+.+++|+|+ ++++++.||.|++||+
T Consensus 276 ~~~~l~~~~~dg-~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 276 CGKWFVSTGKDN-LLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TSSEEEEEETTS-EEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCCEEEEecCCC-cEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 999999999987 999999999999888889999999999998 8999999999999996
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.96 E-value=6.4e-27 Score=265.15 Aligned_cols=267 Identities=19% Similarity=0.241 Sum_probs=222.0
Q ss_pred HHhhhcccccccccc-CcEEEEeeCCCCeEEEeCCc-------ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEe
Q 001349 770 KGLRELRKYSPLAFE-MVKVLSNGHDSSADFWNHRE-------LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWT 839 (1094)
Q Consensus 770 ~~~~~~~~~~~~~~d-~~~l~s~s~dg~I~vWd~~~-------~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd 839 (1094)
++|...+....+.++ +.+|+|||.|++|+|||+.. ....+.+|.+.|.+++|+|+ +|++|+.||.|++|+
T Consensus 35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~ 114 (340)
T 4aow_A 35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD 114 (340)
T ss_dssp CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEe
Confidence 456666667778876 67999999999999999762 34667899999999999997 999999999999999
Q ss_pred cCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCC--
Q 001349 840 GRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQG-- 917 (1094)
Q Consensus 840 ~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg-- 917 (1094)
.... ........+...+..+.+++++.+|++|+.|+.+++||+............+...+..+. |++++
T Consensus 115 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~ 185 (340)
T 4aow_A 115 LTTG--TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR-------FSPNSSN 185 (340)
T ss_dssp TTTT--EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEE-------ECSCSSS
T ss_pred eccc--ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceE-------EccCCCC
Confidence 9988 677777888999999999999999999999999999999887555555556677787777 66654
Q ss_pred CeEEEEEeCCeEEEEcC------------CCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCC
Q 001349 918 AGIKVHLRNGKTKLLNS------------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANP 983 (1094)
Q Consensus 918 ~~l~~~~~~g~i~l~~~------------~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~ 983 (1094)
..+++++.++.+++|+. ...|.+++|++ ..+++|+.||.|++||++++..+..+ . +...
T Consensus 186 ~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~------~-~~~~ 258 (340)
T 4aow_A 186 PIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL------D-GGDI 258 (340)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE------E-CSSC
T ss_pred cEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeee------c-CCce
Confidence 45677888899999874 45789999986 46999999999999999998877433 2 3368
Q ss_pred eEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec----------CCCCEEEEEEeCC--EEEEEEcCCeEEEEECC
Q 001349 984 VHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP----------TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQK 1051 (1094)
Q Consensus 984 V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~----------~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~ 1051 (1094)
|.++.|+|++.+++++ .|+ .|++||++++..+..+. |...|++++|+|| +|++|+.||.|+|||+.
T Consensus 259 v~~~~~~~~~~~~~~~-~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 259 INALCFSPNRYWLCAA-TGP-SIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp EEEEEECSSSSEEEEE-ETT-EEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred EEeeecCCCCceeecc-CCC-EEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 9999999998776655 465 99999999988776653 4678999999998 89999999999999999
Q ss_pred CCc
Q 001349 1052 RQI 1054 (1094)
Q Consensus 1052 t~~ 1054 (1094)
+|+
T Consensus 337 tGt 339 (340)
T 4aow_A 337 IGT 339 (340)
T ss_dssp C--
T ss_pred CcC
Confidence 885
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-27 Score=299.61 Aligned_cols=271 Identities=19% Similarity=0.279 Sum_probs=236.2
Q ss_pred ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 001349 805 LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVW 882 (1094)
Q Consensus 805 ~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vW 882 (1094)
..+.+.+|.+.|++++|+|+ +|++|+.||+|+|||+.++ ..+..+.+|.+.|++++|+|+|++|++|+.||+|++|
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ--VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCC--ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 34677899999999999997 9999999999999999998 7888999999999999999999999999999999999
Q ss_pred ECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC-------------CCCceEEEEeC---C
Q 001349 883 SIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS-------------SKYPKCLALVQ---G 946 (1094)
Q Consensus 883 di~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~-------------~~~v~~l~~s~---~ 946 (1094)
|+.+++.. .....+...|.++. |+|+|..+++++.+|.+++|+. ...+.++.|++ .
T Consensus 83 ~~~~~~~~-~~~~~~~~~v~~~~-------~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 154 (814)
T 3mkq_A 83 NYNTGEKV-VDFEAHPDYIRSIA-------VHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154 (814)
T ss_dssp ETTTCCEE-EEEECCSSCEEEEE-------ECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEE
T ss_pred ECCCCcEE-EEEecCCCCEEEEE-------EeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCC
Confidence 99988632 23345678898888 9999999999999999999973 45689999987 3
Q ss_pred EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeC--CccEEEEEECCCCEEEEEECCCCeEEEEec-CC
Q 001349 947 KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN--GLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TL 1023 (1094)
Q Consensus 947 ~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~--~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~ 1023 (1094)
.+++|+.||.|++||+.++...... ...|...+.+++|+| ++.++++++.|| .|++||+.+++.+..+. |.
T Consensus 155 ~l~~~~~dg~v~vwd~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~ 228 (814)
T 3mkq_A 155 TFASGCLDRTVKVWSLGQSTPNFTL-----TTGQERGVNYVDYYPLPDKPYMITASDDL-TIKIWDYQTKSCVATLEGHM 228 (814)
T ss_dssp EEEEEETTSEEEEEETTCSSCSEEE-----ECCCTTCCCEEEECCSTTCCEEEEECTTS-EEEEEETTTTEEEEEEECCS
T ss_pred EEEEEeCCCeEEEEECCCCcceeEE-----ecCCCCCEEEEEEEECCCCCEEEEEeCCC-EEEEEECCCCcEEEEEcCCC
Confidence 5999999999999999888765322 223448899999998 999999999886 99999999999999888 77
Q ss_pred CCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCC--EEEEEeCCCcEEEEeC
Q 001349 1024 SEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE--FLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1024 ~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~--~L~sgs~DG~I~iWdl 1093 (1094)
..|.+++|+|+ ++++|+.||.|++||+.+++.+..+ ..|...|++++|+|+|. +++++ .|+.+.+|++
T Consensus 229 ~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 300 (814)
T 3mkq_A 229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL-NVGLERSWCIATHPTGRKNYIASG-FDNGFTVLSL 300 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEE-CCSSSSEEEEEECTTCGGGEEEEE-ETTEEEEEEC
T ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ecCCCcEEEEEEccCCCceEEEEE-eCCCEEEEEc
Confidence 89999999998 8999999999999999999999999 47888999999999997 45554 5667888875
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-26 Score=259.37 Aligned_cols=265 Identities=19% Similarity=0.232 Sum_probs=222.9
Q ss_pred hccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCc-ceeE
Q 001349 774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI-LHLI 848 (1094)
Q Consensus 774 ~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~-~~~~ 848 (1094)
..+....+ +++.++++++.||.|++||.. ........|.+.|.+++|+|+ ++++|+.||.|++|++.... ...+
T Consensus 19 ~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~ 97 (313)
T 3odt_A 19 QDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPL 97 (313)
T ss_dssp SCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-
T ss_pred CCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcc
Confidence 34444556 789999999999999999987 345677789999999999996 99999999999999987542 2457
Q ss_pred EEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEee-CCCeEEEEEeCC
Q 001349 849 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP-QGAGIKVHLRNG 927 (1094)
Q Consensus 849 ~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fsp-dg~~l~~~~~~g 927 (1094)
..+.+|...|.++.| +++++++++.||+|++|| .+. .......+..++.++. |.| ++..+++++.+|
T Consensus 98 ~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~-~~~~~~~~~~~v~~~~-------~~~~~~~~l~~~~~d~ 165 (313)
T 3odt_A 98 YTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGS-LVYNLQAHNASVWDAK-------VVSFSENKFLTASADK 165 (313)
T ss_dssp CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTE-EEEEEECCSSCEEEEE-------EEETTTTEEEEEETTS
T ss_pred cchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCc-EEEecccCCCceeEEE-------EccCCCCEEEEEECCC
Confidence 778899999999999 578999999999999999 332 3333445677888877 777 899999999999
Q ss_pred eEEEEc-----------CCCCceEEEEeC-CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccE
Q 001349 928 KTKLLN-----------SSKYPKCLALVQ-GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVY 995 (1094)
Q Consensus 928 ~i~l~~-----------~~~~v~~l~~s~-~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~ 995 (1094)
.+++|+ +...+.++.+++ +.+++|+.||.|++||+++++.. ..+.+|...|++++|+|++ .
T Consensus 166 ~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~------~~~~~~~~~i~~~~~~~~~-~ 238 (313)
T 3odt_A 166 TIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVL------RTYEGHESFVYCIKLLPNG-D 238 (313)
T ss_dssp CEEEEETTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEE------EEEECCSSCEEEEEECTTS-C
T ss_pred CEEEEecCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhh------hhhhcCCceEEEEEEecCC-C
Confidence 999998 356788999974 67999999999999999999877 5567889999999999999 5
Q ss_pred EEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEe
Q 001349 996 TASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETL 1059 (1094)
Q Consensus 996 las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l 1059 (1094)
+++++.|| .|++||+.+++.+..+. +...|.+++|+|+ .+++++.||.|++||+.+++.....
T Consensus 239 l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 239 IVSCGEDR-TVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp EEEEETTS-EEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGGGCCC--
T ss_pred EEEEecCC-EEEEEECCCCceeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCCceeehh
Confidence 77888886 99999999999998888 6678999999999 6778999999999999988765544
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=283.98 Aligned_cols=244 Identities=12% Similarity=0.079 Sum_probs=194.0
Q ss_pred cccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 001349 809 DSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGN 886 (1094)
Q Consensus 809 ~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~ 886 (1094)
...|.++|++++|+|+ +|++|+.||+|++||+.++.+..+..+.+|.+.|++++|+|++++|++++.||+|++||+.+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 3456789999999996 99999999999999999875567788899999999999999999999999999999999998
Q ss_pred Cc-e-EEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCC
Q 001349 887 EE-I-HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT 964 (1094)
Q Consensus 887 ~~-~-~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~ 964 (1094)
+. . .......+...|.++. |+|+++. +++|+.|+.|++||+.+
T Consensus 87 ~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~----------------------------l~~~~~d~~i~iwd~~~ 131 (377)
T 3dwl_C 87 DGTWKQTLVLLRLNRAATFVR-------WSPNEDK----------------------------FAVGSGARVISVCYFEQ 131 (377)
T ss_dssp --CCCCEEECCCCSSCEEEEE-------CCTTSSC----------------------------CEEEESSSCEEECCC--
T ss_pred CCceeeeeEecccCCceEEEE-------ECCCCCE----------------------------EEEEecCCeEEEEEECC
Confidence 74 1 2333344566666666 6666653 88899999999999998
Q ss_pred CceeEEeccceeecC-CCCCeEEEEEeCCccEEEEEECCCCEEEEEECC------------------CCeEEEEecCCCC
Q 001349 965 GTFATIQTGHRKLLG-KANPVHALQVHNGLVYTASTSLDGAAVKMWSTS------------------NYNMVGSLPTLSE 1025 (1094)
Q Consensus 965 ~~~~~~~~~~~~~~~-h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~------------------~~~~~~~~~~~~~ 1025 (1094)
+..... ...+.+ |...|++++|+|++.++++++.|+ .|++||+. .++++..+.|...
T Consensus 132 ~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (377)
T 3dwl_C 132 ENDWWV---SKHLKRPLRSTILSLDWHPNNVLLAAGCADR-KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGW 207 (377)
T ss_dssp ---CCC---CEEECSSCCSCEEEEEECTTSSEEEEEESSS-CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSS
T ss_pred ccccee---eeEeecccCCCeEEEEEcCCCCEEEEEeCCC-EEEEEEEEecccCCCccccccccccchhhhhhcccCCce
Confidence 763110 134555 899999999999999999999997 99999985 3556666667888
Q ss_pred EEEEEEeCC--EEEEEEcCCeEEEEECCCCcE----EEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1026 VRAMVVSSE--LVYLGCKGGTVEIWDQKRQIR----IETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1026 v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~----~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
|.+++|+|+ ++++|+.||.|++||+.+++. +..+ .+|...|++++|+|+|++|++|+.|+.+ +|+.
T Consensus 208 v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~ 279 (377)
T 3dwl_C 208 VHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITV-KLSQLPLRSLLWANESAIVAAGYNYSPI-LLQG 279 (377)
T ss_dssp EEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCE-ECSSSCEEEEEEEETTEEEEEESSSSEE-EECC
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEee-cCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEe
Confidence 999999998 899999999999999999887 6667 5899999999999999999999877666 6654
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-26 Score=291.52 Aligned_cols=263 Identities=19% Similarity=0.282 Sum_probs=216.1
Q ss_pred hhhcccccccccc-CcEEEEeeCCCCeEEEeCCc-------ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecC
Q 001349 772 LRELRKYSPLAFE-MVKVLSNGHDSSADFWNHRE-------LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR 841 (1094)
Q Consensus 772 ~~~~~~~~~~~~d-~~~l~s~s~dg~I~vWd~~~-------~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~ 841 (1094)
|...+....+.++ +..|++|+.|++|++|++.. ....+.+|.+.|.+++|+|+ +|+||+.||+|+|||+.
T Consensus 381 H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~ 460 (694)
T 3dm0_A 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLA 460 (694)
T ss_dssp CSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 3334444555554 46899999999999999862 24567899999999999997 99999999999999999
Q ss_pred CCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEe--cccCccceeeeecCceEEEeeCC--
Q 001349 842 GSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQV--HDIKDQIQNLAVSNSILCFIPQG-- 917 (1094)
Q Consensus 842 t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~--~~~~~~V~~v~~~~~~~~fspdg-- 917 (1094)
++ ..+..+.+|.+.|++++|+|++++|+||+.|++|++||+.......+.. ..|...|.++. |+|++
T Consensus 461 ~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~-------~~~~~~~ 531 (694)
T 3dm0_A 461 AG--VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVR-------FSPNTLQ 531 (694)
T ss_dssp TT--EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEE-------ECSCSSS
T ss_pred CC--cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEE-------EeCCCCc
Confidence 98 7888999999999999999999999999999999999987653222221 24667788887 88887
Q ss_pred CeEEEEEeCCeEEEEcC------------CCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCC
Q 001349 918 AGIKVHLRNGKTKLLNS------------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANP 983 (1094)
Q Consensus 918 ~~l~~~~~~g~i~l~~~------------~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~ 983 (1094)
..+++++.|+.+++|+. ...|.++++++ ..+++|+.||+|++||+.+++.+.. +. +...
T Consensus 532 ~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~------~~-~~~~ 604 (694)
T 3dm0_A 532 PTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS------LE-ANSV 604 (694)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEEC------CB-CSSC
T ss_pred ceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE------ec-CCCc
Confidence 57899999999999984 45789999986 4699999999999999999987632 22 3467
Q ss_pred eEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCC--------------------CCEEEEEEeCC--EEEEEEc
Q 001349 984 VHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTL--------------------SEVRAMVVSSE--LVYLGCK 1041 (1094)
Q Consensus 984 V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~--------------------~~v~~l~~spd--~l~sgs~ 1041 (1094)
|.+++|+|++.++++++ ++ .|++||+.++..+..+... ..+++++|+|+ +|++|+.
T Consensus 605 v~~~~~sp~~~~l~~~~-~~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~ 682 (694)
T 3dm0_A 605 IHALCFSPNRYWLCAAT-EH-GIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYT 682 (694)
T ss_dssp EEEEEECSSSSEEEEEE-TT-EEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEET
T ss_pred EEEEEEcCCCcEEEEEc-CC-CEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcC
Confidence 99999999999888776 43 7999999999888776421 13788999998 8999999
Q ss_pred CCeEEEEECCC
Q 001349 1042 GGTVEIWDQKR 1052 (1094)
Q Consensus 1042 dg~I~vwd~~t 1052 (1094)
||+|+|||+..
T Consensus 683 Dg~i~iW~i~~ 693 (694)
T 3dm0_A 683 DGVIRVWGIGR 693 (694)
T ss_dssp TSEEEEEEC--
T ss_pred CCeEEEEeccC
Confidence 99999999853
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=270.43 Aligned_cols=264 Identities=14% Similarity=0.155 Sum_probs=197.0
Q ss_pred HHHHHHhhhccccccccccCcEEEEeeCCCCeEEEeCCc----ceeecccCCCcEEEEEEeC----CEEEEEECCCeEEE
Q 001349 766 KDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE----LVHVDSSENGKVLSIACFR----DKIFSGHSDGTIKV 837 (1094)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~----~~~~~~~h~~~V~~l~fsp----d~LaSgs~Dg~I~v 837 (1094)
...+.+|...+....|.+++.+|++|+.|++|++||... ....+.+|.+.|++++|++ ++|+||+.||+|++
T Consensus 6 ~~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 6 NTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp --------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred eeecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 344567777788888999999999999999999999863 3566789999999999974 39999999999999
Q ss_pred EecCCCcceeEEEecccCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCc-eEEE-EecccCccceeeeecCceEEE
Q 001349 838 WTGRGSILHLIQQIREHTKAVTGLAILQS--GEMLYSGSLDKTARVWSIGNEE-IHCV-QVHDIKDQIQNLAVSNSILCF 913 (1094)
Q Consensus 838 Wd~~t~~~~~~~~l~~H~~~V~sv~fspd--g~~LaSgs~DgtI~vWdi~~~~-~~~~-~~~~~~~~V~~v~~~~~~~~f 913 (1094)
||+.++....+..+.+|...|++++|+|+ |.+|++|+.||+|++||+.++. .... ....+...+.++. |
T Consensus 86 Wd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~-------~ 158 (316)
T 3bg1_A 86 WREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVS-------W 158 (316)
T ss_dssp ECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCE-------E
T ss_pred EECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEE-------E
Confidence 99998755677788999999999999997 8899999999999999998763 2111 1234566777776 6
Q ss_pred eeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCc
Q 001349 914 IPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL 993 (1094)
Q Consensus 914 spdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~ 993 (1094)
+|++..- . +.++...- .......+++|+.|++|++||+..+..... ...+.+|...|.+++|+|++
T Consensus 159 ~~~~~~~-------~--~~~~~~~~--~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~---~~~l~~h~~~V~~v~~sp~~ 224 (316)
T 3bg1_A 159 APAVVPG-------S--LIDHPSGQ--KPNYIKRFASGGCDNLIKLWKEEEDGQWKE---EQKLEAHSDWVRDVAWAPSI 224 (316)
T ss_dssp CCCCCC---------------CCSC--CCCCCCBEECCBTTSBCCEEEECTTSCEEE---EECCBCCSSCEEEEECCCCS
T ss_pred ccccCCc-------c--cccccccc--CccccceEEEecCCCeEEEEEeCCCCccce---eeecccCCCceEEEEecCCC
Confidence 6664210 0 00000000 000013589999999999999975531111 14677899999999999986
Q ss_pred ----cEEEEEECCCCEEEEEECCCC---e-EEEEe-cCCCCEEEEEEeCC--EEEEEEcCCeEEEEECC
Q 001349 994 ----VYTASTSLDGAAVKMWSTSNY---N-MVGSL-PTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQK 1051 (1094)
Q Consensus 994 ----~~las~s~Dg~~I~iwd~~~~---~-~~~~~-~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~ 1051 (1094)
.++++++.|+ +|++||+.+. . ....+ .|...|.+++|+|+ +|++|+.||+|++|+..
T Consensus 225 ~~~~~~las~s~D~-~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 225 GLPTSTIASCSQDG-RVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp SCSCCEEEEEETTC-EEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CCCCceEEEEcCCC-eEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 7899999997 9999998762 1 11222 36788999999998 89999999999999975
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-26 Score=262.28 Aligned_cols=268 Identities=14% Similarity=0.141 Sum_probs=226.2
Q ss_pred hhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCccee
Q 001349 772 LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHL 847 (1094)
Q Consensus 772 ~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~ 847 (1094)
|...+....+.+++.++++++.||.|++||.. .....+.+|.+.|++++|+|+ +|++++.||+|++||+.++ +.
T Consensus 31 h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~ 108 (369)
T 3zwl_B 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG--QC 108 (369)
T ss_dssp CSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC--CE
T ss_pred eeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--cE
Confidence 44455567788899999999999999999987 456778899999999999986 9999999999999999998 67
Q ss_pred EEEecccCCCeEEEEEecCCCEEEEEeCC-----CcEEEEECCCCce------------EEEEecccCccceeeeecCce
Q 001349 848 IQQIREHTKAVTGLAILQSGEMLYSGSLD-----KTARVWSIGNEEI------------HCVQVHDIKDQIQNLAVSNSI 910 (1094)
Q Consensus 848 ~~~l~~H~~~V~sv~fspdg~~LaSgs~D-----gtI~vWdi~~~~~------------~~~~~~~~~~~V~~v~~~~~~ 910 (1094)
+..+. |...|.+++|+|+++++++++.+ |.|++||+..+.. .....+.....+.++.
T Consensus 109 ~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 182 (369)
T 3zwl_B 109 VATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAG----- 182 (369)
T ss_dssp EEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEE-----
T ss_pred EEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEE-----
Confidence 77776 89999999999999999999999 9999999977541 1111111122566665
Q ss_pred EEEeeCCCeEEEEEeCCeEEEEcCC-------------CCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccce
Q 001349 911 LCFIPQGAGIKVHLRNGKTKLLNSS-------------KYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHR 975 (1094)
Q Consensus 911 ~~fspdg~~l~~~~~~g~i~l~~~~-------------~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~ 975 (1094)
|+|+++.++++..+|.+.+|+.. ..|.++.|++ ..+++++.||.|++||+.+++....+.
T Consensus 183 --~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--- 257 (369)
T 3zwl_B 183 --WSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE--- 257 (369)
T ss_dssp --ECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---
T ss_pred --EcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec---
Confidence 99999999999999999999853 4588888875 469999999999999999998874332
Q ss_pred eecCCCCCeEEEEEeCCccEEEEEECCCC-------------EEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEE
Q 001349 976 KLLGKANPVHALQVHNGLVYTASTSLDGA-------------AVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLG 1039 (1094)
Q Consensus 976 ~~~~h~~~V~sl~fs~~~~~las~s~Dg~-------------~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sg 1039 (1094)
+...+..+.|+|++.++++++.++. .+++||..+++.+..+. |...|.+++|+|+ ++++|
T Consensus 258 ----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 333 (369)
T 3zwl_B 258 ----TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASG 333 (369)
T ss_dssp ----CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred ----CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEE
Confidence 5678999999999999999987753 79999999999998888 7889999999998 89999
Q ss_pred EcCCeEEEEECCCCcEE
Q 001349 1040 CKGGTVEIWDQKRQIRI 1056 (1094)
Q Consensus 1040 s~dg~I~vwd~~t~~~~ 1056 (1094)
+.||.|++|++.++...
T Consensus 334 ~~dg~v~iw~~~~~~~~ 350 (369)
T 3zwl_B 334 GEDGFIRLHHFEKSYFD 350 (369)
T ss_dssp ETTSEEEEEEECHHHHT
T ss_pred cCCCeEEEEECccccch
Confidence 99999999999876543
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=268.78 Aligned_cols=258 Identities=10% Similarity=0.113 Sum_probs=217.3
Q ss_pred cccccCcEEEEeeCCCCeEEEeCCc--------ceeecccCCCcEEEEEEeCC---------EEEEEECCCeEEEEecCC
Q 001349 780 PLAFEMVKVLSNGHDSSADFWNHRE--------LVHVDSSENGKVLSIACFRD---------KIFSGHSDGTIKVWTGRG 842 (1094)
Q Consensus 780 ~~~~d~~~l~s~s~dg~I~vWd~~~--------~~~~~~~h~~~V~~l~fspd---------~LaSgs~Dg~I~vWd~~t 842 (1094)
.+.+++.++++++.||.|++|+... ....+.+|...|++++|+|+ +|++|+.||+|++||+.+
T Consensus 21 ~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~ 100 (397)
T 1sq9_A 21 SVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITR 100 (397)
T ss_dssp EEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEE
T ss_pred EEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccC
Confidence 3444558999999999999999972 46777899999999999964 899999999999999998
Q ss_pred Cccee-----EEEeccc-----CCCeEEEEEe----cCCCE-EEEEeCCCcEEEEECCC------Cc-eE-----EEEe-
Q 001349 843 SILHL-----IQQIREH-----TKAVTGLAIL----QSGEM-LYSGSLDKTARVWSIGN------EE-IH-----CVQV- 894 (1094)
Q Consensus 843 ~~~~~-----~~~l~~H-----~~~V~sv~fs----pdg~~-LaSgs~DgtI~vWdi~~------~~-~~-----~~~~- 894 (1094)
+ .. +..+..| ...|++++|+ |++++ |++++.||.|++||+.+ ++ .. .+..
T Consensus 101 ~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 178 (397)
T 1sq9_A 101 E--DETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT 178 (397)
T ss_dssp C--TTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEE
T ss_pred C--cccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeee
Confidence 7 44 7788888 5999999999 99999 99999999999999988 43 22 3332
Q ss_pred ----cccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC------------------CCCceEEEEeC--CEEEE
Q 001349 895 ----HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS------------------SKYPKCLALVQ--GKVYC 950 (1094)
Q Consensus 895 ----~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~------------------~~~v~~l~~s~--~~l~s 950 (1094)
..+...+.++. |+|++ .++++..+|.+.+|+. ...+.++.|++ ..+++
T Consensus 179 ~~~~~~~~~~i~~~~-------~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~ 250 (397)
T 1sq9_A 179 VESPMTPSQFATSVD-------ISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI 250 (397)
T ss_dssp ECCSSSSCCCCCEEE-------ECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEE
T ss_pred eccccCCCCCceEEE-------ECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEE
Confidence 34567788877 99999 9999999999999873 45688888875 56999
Q ss_pred EEcC---CeEEEEECCCCceeEEeccceeecC-------------CCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCC
Q 001349 951 GCQD---GAIQEIDLATGTFATIQTGHRKLLG-------------KANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY 1014 (1094)
Q Consensus 951 gs~D---g~I~iwDl~~~~~~~~~~~~~~~~~-------------h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~ 1014 (1094)
++.| |.|++||+.+++.+. .+.+ |...|.+++|+|++.++++++.|| .|++||+.++
T Consensus 251 ~~~d~~~g~i~i~d~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~ 323 (397)
T 1sq9_A 251 AHDSNSFGCITLYETEFGERIG------SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG-KLRFWDVKTK 323 (397)
T ss_dssp EEEETTEEEEEEEETTTCCEEE------EECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS-EEEEEETTTT
T ss_pred EecCCCCceEEEEECCCCcccc------eeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCC-eEEEEEcCCC
Confidence 9999 999999999998774 4444 889999999999999999999987 9999999999
Q ss_pred eEEEEec-------C---------------CCCEEEEEEeCC------------EEEEEEcCCeEEEEECCCCc
Q 001349 1015 NMVGSLP-------T---------------LSEVRAMVVSSE------------LVYLGCKGGTVEIWDQKRQI 1054 (1094)
Q Consensus 1015 ~~~~~~~-------~---------------~~~v~~l~~spd------------~l~sgs~dg~I~vwd~~t~~ 1054 (1094)
+.+..+. | ...|.+++|+|+ ++++|+.||.|++||+.+|+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 324 ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 9998887 4 688999999998 79999999999999998764
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.8e-27 Score=274.49 Aligned_cols=263 Identities=13% Similarity=0.145 Sum_probs=217.4
Q ss_pred cEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEE
Q 001349 815 KVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCV 892 (1094)
Q Consensus 815 ~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~ 892 (1094)
.+++++|+|+ +|++|+.||+|++||+.++ .....+..| ..+....|++++++|++|+.||+|++||+.+++ ..
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~--~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~ 132 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIR--DGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL--QR 132 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSE--ETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE--EE
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEeccc--ceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc--ee
Confidence 3457899986 9999999999999999887 445555555 445556789999999999999999999999874 33
Q ss_pred Ee-cccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC------------CCCceEEEEeC--CEEEEEEcCCeE
Q 001349 893 QV-HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS------------SKYPKCLALVQ--GKVYCGCQDGAI 957 (1094)
Q Consensus 893 ~~-~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~------------~~~v~~l~~s~--~~l~sgs~Dg~I 957 (1094)
.. ..+...|.++. |+|+++.+++++.++.+++|+. ...|.+++|++ ..+++|+.||.|
T Consensus 133 ~~~~~h~~~v~~~~-------~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v 205 (420)
T 3vl1_A 133 EIDQAHVSEITKLK-------FFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTI 205 (420)
T ss_dssp EETTSSSSCEEEEE-------ECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred eecccccCccEEEE-------ECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcE
Confidence 33 46788999988 9999999999999999999984 45689999985 469999999999
Q ss_pred EEEECCCCceeEEeccceeecCCC---------------------CCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeE
Q 001349 958 QEIDLATGTFATIQTGHRKLLGKA---------------------NPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNM 1016 (1094)
Q Consensus 958 ~iwDl~~~~~~~~~~~~~~~~~h~---------------------~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~ 1016 (1094)
++||+++++....+..+ ..|. ..+.+++|+|++.++++++.|| .|++||+++++.
T Consensus 206 ~iwd~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~i~d~~~~~~ 281 (420)
T 3vl1_A 206 RLWECGTGTTIHTFNRK---ENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG-VITVHNVFSKEQ 281 (420)
T ss_dssp EEEETTTTEEEEEECBT---TBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS-CEEEEETTTCCE
T ss_pred EEeECCCCceeEEeecC---CCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC-eEEEEECCCCce
Confidence 99999999887554322 1233 4444555578899999999997 999999999988
Q ss_pred EEEec--CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCcE-EEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEE
Q 001349 1017 VGSLP--TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIR-IETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQA 1090 (1094)
Q Consensus 1017 ~~~~~--~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~~-~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~i 1090 (1094)
...+. |...|.+++|+|+ ++++|+.||.|++||+.+++. +..+...|...|+++.| +++++|++++.||+|++
T Consensus 282 ~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~i 360 (420)
T 3vl1_A 282 TIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKL 360 (420)
T ss_dssp EEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEE
T ss_pred eEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEE
Confidence 87776 5688999999998 899999999999999998754 67775457778888865 57889999999999999
Q ss_pred EeCC
Q 001349 1091 WGLS 1094 (1094)
Q Consensus 1091 Wdls 1094 (1094)
|++.
T Consensus 361 w~~~ 364 (420)
T 3vl1_A 361 DIIS 364 (420)
T ss_dssp EEEC
T ss_pred Eecc
Confidence 9963
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.5e-27 Score=270.07 Aligned_cols=243 Identities=13% Similarity=0.141 Sum_probs=198.6
Q ss_pred eeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEec-CCCEEEEEeCCCcEEE
Q 001349 806 VHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARV 881 (1094)
Q Consensus 806 ~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fsp-dg~~LaSgs~DgtI~v 881 (1094)
...+.+|.+.|++++|+|+ +|++|+.||+|++||+.++.........+|.+.|++++|+| ++++|++++.||+|++
T Consensus 66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i 145 (383)
T 3ei3_B 66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTL 145 (383)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEE
Confidence 3456789999999999985 89999999999999999884444444457999999999999 7899999999999999
Q ss_pred EECCCCceEEEEec-ccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEE
Q 001349 882 WSIGNEEIHCVQVH-DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEI 960 (1094)
Q Consensus 882 Wdi~~~~~~~~~~~-~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iw 960 (1094)
||+.+.....+... .+...|.++. |+|+++ .+++|+.||.|++|
T Consensus 146 wd~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~----------------------------~l~~~~~d~~i~i~ 190 (383)
T 3ei3_B 146 RDFSGSVIQVFAKTDSWDYWYCCVD-------VSVSRQ----------------------------MLATGDSTGRLLLL 190 (383)
T ss_dssp EETTSCEEEEEECCCCSSCCEEEEE-------EETTTT----------------------------EEEEEETTSEEEEE
T ss_pred EECCCCceEEEeccCCCCCCeEEEE-------ECCCCC----------------------------EEEEECCCCCEEEE
Confidence 99997544333322 2335566666 777776 38889999999999
Q ss_pred ECCCCceeEEeccceeecCCCCCeEEEEEeCCcc-EEEEEECCCCEEEEEECCC----CeEEEEecCCCCEEEEEEeC-C
Q 001349 961 DLATGTFATIQTGHRKLLGKANPVHALQVHNGLV-YTASTSLDGAAVKMWSTSN----YNMVGSLPTLSEVRAMVVSS-E 1034 (1094)
Q Consensus 961 Dl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~-~las~s~Dg~~I~iwd~~~----~~~~~~~~~~~~v~~l~~sp-d 1034 (1094)
|++ +... ..+.+|...|.+++|+|++. ++++++.|+ .|++||+++ +.++..+.|...|.+++|+| +
T Consensus 191 d~~-~~~~------~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 262 (383)
T 3ei3_B 191 GLD-GHEI------FKEKLHKAKVTHAEFNPRCDWLMATSSVDA-TVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 262 (383)
T ss_dssp ETT-SCEE------EEEECSSSCEEEEEECSSCTTEEEEEETTS-EEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTT
T ss_pred ECC-CCEE------EEeccCCCcEEEEEECCCCCCEEEEEeCCC-EEEEEeCCCCCcccceEEEecCCCceEEEEEcCCC
Confidence 994 5554 46678999999999999998 899999986 999999997 77888888999999999999 6
Q ss_pred --EEEEEEcCCeEEEEECCCCcEEEEecccCC-----------------cceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1035 --LVYLGCKGGTVEIWDQKRQIRIETLQTGTS-----------------GKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1035 --~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~-----------------~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
++++++.||.|++||+.+++....+. +|. +.+..++|+|||++ +|+.||+|++||+.
T Consensus 263 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~ 338 (383)
T 3ei3_B 263 STKLLTTDQRNEIRVYSSYDWSKPDQII-IHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDAN 338 (383)
T ss_dssp SCEEEEEESSSEEEEEETTBTTSCSEEE-ECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETT
T ss_pred CCEEEEEcCCCcEEEEECCCCccccccc-cccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecC
Confidence 89999999999999999887766653 332 23445677777766 77899999999973
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.5e-26 Score=270.41 Aligned_cols=264 Identities=17% Similarity=0.266 Sum_probs=215.5
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeC--C--EEEEEECCCeEEEEecCCCcce-----
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR--D--KIFSGHSDGTIKVWTGRGSILH----- 846 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fsp--d--~LaSgs~Dg~I~vWd~~t~~~~----- 846 (1094)
...+.+++ .+++|+.||+|++||.. .....+.+|.+.|.+++|++ + ++++|+.||+|++||+.++...
T Consensus 167 ~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 245 (464)
T 3v7d_B 167 ALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGE 245 (464)
T ss_dssp EEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-----
T ss_pred EEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccc
Confidence 34444445 99999999999999987 45677889999999999984 3 8999999999999999876321
Q ss_pred ----------------eEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCce
Q 001349 847 ----------------LIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSI 910 (1094)
Q Consensus 847 ----------------~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~ 910 (1094)
.+..+.+|...|.++ +++++++++|+.||+|++||+.+++. ......+...|.++.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~----- 317 (464)
T 3v7d_B 246 EHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKC-LYILSGHTDRIYSTI----- 317 (464)
T ss_dssp -CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEE-----
T ss_pred cCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcE-EEEecCCCCCEEEEE-----
Confidence 266788999999887 57899999999999999999998752 222234566677766
Q ss_pred EEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEe
Q 001349 911 LCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVH 990 (1094)
Q Consensus 911 ~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs 990 (1094)
|+|+++ .+++|+.||.|++||+.+++.. ..+.+|...|.++.|+
T Consensus 318 --~~~~~~----------------------------~l~sg~~dg~i~vwd~~~~~~~------~~~~~h~~~v~~~~~~ 361 (464)
T 3v7d_B 318 --YDHERK----------------------------RCISASMDTTIRIWDLENGELM------YTLQGHTALVGLLRLS 361 (464)
T ss_dssp --EETTTT----------------------------EEEEEETTSCEEEEETTTTEEE------EEECCCSSCEEEEEEC
T ss_pred --EcCCCC----------------------------EEEEEeCCCcEEEEECCCCcEE------EEEeCCCCcEEEEEEc
Confidence 777766 4889999999999999999887 5667899999999997
Q ss_pred CCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceE
Q 001349 991 NGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQ 1068 (1094)
Q Consensus 991 ~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~ 1068 (1094)
+.++++++.|| .|++||+.++.....+.+...+..++|+++ ++++|+ ||.|++||+.+++.+..+..+|.+.|+
T Consensus 362 --~~~l~s~s~dg-~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~ 437 (464)
T 3v7d_B 362 --DKFLVSAAADG-SIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIW 437 (464)
T ss_dssp --SSEEEEEETTS-EEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEE
T ss_pred --CCEEEEEeCCC-cEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEE
Confidence 46889999997 999999999888888777777777788777 788877 899999999999999875568899999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEE
Q 001349 1069 CMALDDNEEFLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1069 ~l~~Spdg~~L~sgs~DG~I~iW 1091 (1094)
+++|+ ++.++++++.||.+.+|
T Consensus 438 ~v~~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 438 SVNFK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp EEEEE-TTEEEEEEEETTEEEEE
T ss_pred EEEec-CCEEEEEEEeCCeEEEE
Confidence 99997 44556666777765544
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-27 Score=269.84 Aligned_cols=246 Identities=13% Similarity=0.192 Sum_probs=202.5
Q ss_pred eeecccCCCcEEEEEEeC-----C-EEEEEECCCeEEEEecCCCcceeEEEecc-----cCCCeEEEEEecC----CCEE
Q 001349 806 VHVDSSENGKVLSIACFR-----D-KIFSGHSDGTIKVWTGRGSILHLIQQIRE-----HTKAVTGLAILQS----GEML 870 (1094)
Q Consensus 806 ~~~~~~h~~~V~~l~fsp-----d-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~-----H~~~V~sv~fspd----g~~L 870 (1094)
.....+|.+.|++++|+| + .+++++.+|.|++||+.++ ..+..+.. |...|++++|+|+ |.+|
T Consensus 11 ~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l 88 (366)
T 3k26_A 11 NSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ--GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLL 88 (366)
T ss_dssp EEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG--GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEE
T ss_pred EEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC--cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEE
Confidence 345668999999999997 2 6777777889999999977 44444443 6678999999998 6799
Q ss_pred EEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEee-CCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEE
Q 001349 871 YSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP-QGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVY 949 (1094)
Q Consensus 871 aSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fsp-dg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~ 949 (1094)
++|+.||+|++||+.+++... ....+...|.++. |+| ++. .++
T Consensus 89 ~~~~~dg~i~v~d~~~~~~~~-~~~~~~~~i~~~~-------~~~~~~~----------------------------~l~ 132 (366)
T 3k26_A 89 AVAGSRGIIRIINPITMQCIK-HYVGHGNAINELK-------FHPRDPN----------------------------LLL 132 (366)
T ss_dssp EEEETTCEEEEECTTTCCEEE-EEESCCSCEEEEE-------ECSSCTT----------------------------EEE
T ss_pred EEecCCCEEEEEEchhceEee-eecCCCCcEEEEE-------ECCCCCC----------------------------EEE
Confidence 999999999999999875322 2234566777776 666 554 488
Q ss_pred EEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec--------
Q 001349 950 CGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-------- 1021 (1094)
Q Consensus 950 sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-------- 1021 (1094)
+|+.||.|++||+.+++....+. .+.+|...|.+++|+|++.++++++.|| .|++||+++++....+.
T Consensus 133 s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~ 208 (366)
T 3k26_A 133 SVSKDHALRLWNIQTDTLVAIFG---GVEGHRDEVLSADYDLLGEKIMSCGMDH-SLKLWRINSKRMMNAIKESYDYNPN 208 (366)
T ss_dssp EEETTSCEEEEETTTTEEEEEEC---STTSCSSCEEEEEECTTSSEEEEEETTS-CEEEEESCSHHHHHHHHHHHTCCGG
T ss_pred EEeCCCeEEEEEeecCeEEEEec---ccccccCceeEEEECCCCCEEEEecCCC-CEEEEECCCCccccccceeEEecCC
Confidence 99999999999999988764321 1257899999999999999999999997 99999998765443332
Q ss_pred ---------------------CCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcE--------------EEEecccCCcc
Q 001349 1022 ---------------------TLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIR--------------IETLQTGTSGK 1066 (1094)
Q Consensus 1022 ---------------------~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~--------------~~~l~~~h~~~ 1066 (1094)
|...|.+++|+++++++++.||.|++||+.++.. +..+ .+|...
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 287 (366)
T 3k26_A 209 KTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRF-DYSQCD 287 (366)
T ss_dssp GCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEE-ECSSCC
T ss_pred CCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccc-cccCCc
Confidence 7788999999988999999999999999987643 6666 588899
Q ss_pred eEEEEEcCC--CCEEEEEeCCCcEEEEeCC
Q 001349 1067 VQCMALDDN--EEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1067 I~~l~~Spd--g~~L~sgs~DG~I~iWdls 1094 (1094)
|++++|+|+ +++|++|+.||.|++||+.
T Consensus 288 v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~ 317 (366)
T 3k26_A 288 IWYMRFSMDFWQKMLALGNQVGKLYVWDLE 317 (366)
T ss_dssp SSCCCCEECTTSSEEEEECTTSCEEEEECC
T ss_pred EEEEEEcCCCCCcEEEEEecCCcEEEEECC
Confidence 999999999 9999999999999999974
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.8e-27 Score=267.23 Aligned_cols=276 Identities=11% Similarity=0.105 Sum_probs=213.7
Q ss_pred hccccccccccCcEE-EEeeC---CCCeEEEeCCcc--e-eecccCCCcEEEEEEeC-----CEEEEEECCCeEEEEecC
Q 001349 774 ELRKYSPLAFEMVKV-LSNGH---DSSADFWNHREL--V-HVDSSENGKVLSIACFR-----DKIFSGHSDGTIKVWTGR 841 (1094)
Q Consensus 774 ~~~~~~~~~~d~~~l-~s~s~---dg~I~vWd~~~~--~-~~~~~h~~~V~~l~fsp-----d~LaSgs~Dg~I~vWd~~ 841 (1094)
..+....+.+++..+ ++++. ||.|++||.... . ....+|.+.|++++|+| ++|++|+.||+|++||+.
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 98 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLE 98 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTT
T ss_pred CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCC
Confidence 344556677778655 56665 999999998732 2 22347999999999997 389999999999999999
Q ss_pred CCcceeEEEecccCCCeEEEEE------ecCCCEEEEEeCCCcEEEEECCCCc--eEEEEeccc--CccceeeeecCceE
Q 001349 842 GSILHLIQQIREHTKAVTGLAI------LQSGEMLYSGSLDKTARVWSIGNEE--IHCVQVHDI--KDQIQNLAVSNSIL 911 (1094)
Q Consensus 842 t~~~~~~~~l~~H~~~V~sv~f------spdg~~LaSgs~DgtI~vWdi~~~~--~~~~~~~~~--~~~V~~v~~~~~~~ 911 (1094)
++. ..+..+.+|.+.|+++.| +|++++|++++.||+|++||+.++. ...+..+.. ...+.++.+..
T Consensus 99 ~~~-~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--- 174 (357)
T 3i2n_A 99 APE-MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGN--- 174 (357)
T ss_dssp SCS-SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEEC---
T ss_pred CCC-ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEe---
Confidence 883 277888999999999955 6799999999999999999999875 222222211 33666665332
Q ss_pred EEeeCCCeEEEEEeCCeEEEEcC-----------CCCceEEEEeC-----CEEEEEEcCCeEEEEECCCCceeEEeccce
Q 001349 912 CFIPQGAGIKVHLRNGKTKLLNS-----------SKYPKCLALVQ-----GKVYCGCQDGAIQEIDLATGTFATIQTGHR 975 (1094)
Q Consensus 912 ~fspdg~~l~~~~~~g~i~l~~~-----------~~~v~~l~~s~-----~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~ 975 (1094)
+|+|++..++++..+|.+++|+. ...+.++.|++ +.+++|+.||.|++||++++.....+.. .
T Consensus 175 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~ 253 (357)
T 3i2n_A 175 AYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFAS-V 253 (357)
T ss_dssp CCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEE-E
T ss_pred ccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceee-e
Confidence 27899999999999999999984 46789999975 5699999999999999987665422211 1
Q ss_pred eecCCCCCeEEEEEeCCcc-EEEEEECCCCEEEEEECCCC-------------------eEEEEec-CCCCEEEEEEeCC
Q 001349 976 KLLGKANPVHALQVHNGLV-YTASTSLDGAAVKMWSTSNY-------------------NMVGSLP-TLSEVRAMVVSSE 1034 (1094)
Q Consensus 976 ~~~~h~~~V~sl~fs~~~~-~las~s~Dg~~I~iwd~~~~-------------------~~~~~~~-~~~~v~~l~~spd 1034 (1094)
.+.+|...|++++|+|++. ++++++.|| .|++||++++ ..+..+. |...|.+++|+|+
T Consensus 254 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 332 (357)
T 3i2n_A 254 SEKAHKSTVWQVRHLPQNRELFLTAGGAG-GLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPD 332 (357)
T ss_dssp EEECCSSCEEEEEEETTEEEEEEEEETTS-EEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSS
T ss_pred ccCCCcCCEEEEEECCCCCcEEEEEeCCC-cEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCC
Confidence 3348999999999999988 899999987 9999999754 3455555 7788999999998
Q ss_pred --EEE-EEEcCCeEEEEECCCCcE
Q 001349 1035 --LVY-LGCKGGTVEIWDQKRQIR 1055 (1094)
Q Consensus 1035 --~l~-sgs~dg~I~vwd~~t~~~ 1055 (1094)
+++ +|+.||.|++||+.+.+.
T Consensus 333 ~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 333 KRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp STTEEEEEETTSEEEEEEECC---
T ss_pred CCeEEEEecCCCcEEEEECCCccc
Confidence 566 899999999999987654
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-27 Score=277.83 Aligned_cols=269 Identities=11% Similarity=0.099 Sum_probs=200.0
Q ss_pred ccccccc-cCcEEEEeeCCCCeEEEeCCc----ceeecccCCCcEEEEEEeC-C--EEEEEECCCeEEEEecCCCcceeE
Q 001349 777 KYSPLAF-EMVKVLSNGHDSSADFWNHRE----LVHVDSSENGKVLSIACFR-D--KIFSGHSDGTIKVWTGRGSILHLI 848 (1094)
Q Consensus 777 ~~~~~~~-d~~~l~s~s~dg~I~vWd~~~----~~~~~~~h~~~V~~l~fsp-d--~LaSgs~Dg~I~vWd~~t~~~~~~ 848 (1094)
....|.+ ++..||+|+.||+|+|||+.. ....+.+|.+.|++++|+| + +|+||+.||+|++||+.++....+
T Consensus 123 ~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~ 202 (435)
T 4e54_B 123 TSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVF 202 (435)
T ss_dssp EEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEE
T ss_pred EEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEE
Confidence 3445554 567899999999999999862 2344568999999999997 3 999999999999999988733223
Q ss_pred EEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCC-eEEEEEeCC
Q 001349 849 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGA-GIKVHLRNG 927 (1094)
Q Consensus 849 ~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~-~l~~~~~~g 927 (1094)
.....+...+.+++|+|++++|++|+.||+|++||+++.... ....|...|.++. |+|++. .+++++.|+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~--~~~~h~~~v~~v~-------~~p~~~~~~~s~s~d~ 273 (435)
T 4e54_B 203 ASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELW--NLRMHKKKVTHVA-------LNPCCDWFLATASVDQ 273 (435)
T ss_dssp ECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCC--CSBCCSSCEEEEE-------ECTTCSSEEEEEETTS
T ss_pred eccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeE--EEecccceEEeee-------ecCCCceEEEEecCcc
Confidence 333344556889999999999999999999999999875332 2345678888887 999887 567788999
Q ss_pred eEEEEcC---------------CCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEe
Q 001349 928 KTKLLNS---------------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVH 990 (1094)
Q Consensus 928 ~i~l~~~---------------~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs 990 (1094)
.+++|+. ...|.+++|++ ..|++|+.||.|++||+.++.....+..+.........+....|+
T Consensus 274 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (435)
T 4e54_B 274 TVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWH 353 (435)
T ss_dssp BCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEEC
T ss_pred eeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEc
Confidence 9999973 34688999985 479999999999999999988764433221111111223344566
Q ss_pred CCccEEEEEE-----------CCCCEEEEEECCCCeEEEEec--CCCCEEEE-EEeCC--EEEEEEcCCeEEEEECCCCc
Q 001349 991 NGLVYTASTS-----------LDGAAVKMWSTSNYNMVGSLP--TLSEVRAM-VVSSE--LVYLGCKGGTVEIWDQKRQI 1054 (1094)
Q Consensus 991 ~~~~~las~s-----------~Dg~~I~iwd~~~~~~~~~~~--~~~~v~~l-~~spd--~l~sgs~dg~I~vwd~~t~~ 1054 (1094)
+++.++++++ .+++.|++||..+++.+..+. |...|.++ +|+|+ +|++|+ |+.|+|||+.+++
T Consensus 354 ~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 354 PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 6665555543 234589999999999988875 56778777 69998 676665 8899999999886
Q ss_pred E
Q 001349 1055 R 1055 (1094)
Q Consensus 1055 ~ 1055 (1094)
.
T Consensus 433 ~ 433 (435)
T 4e54_B 433 T 433 (435)
T ss_dssp -
T ss_pred e
Confidence 5
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.4e-27 Score=274.88 Aligned_cols=272 Identities=11% Similarity=0.152 Sum_probs=201.0
Q ss_pred cCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCc---------ceeEEEecccC------------CCeEEEEEecCC
Q 001349 811 SENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI---------LHLIQQIREHT------------KAVTGLAILQSG 867 (1094)
Q Consensus 811 ~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~---------~~~~~~l~~H~------------~~V~sv~fspdg 867 (1094)
.|.+.|++++|+|+ +|++|+.||.|+|||+.++. ......+.+|. +.|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 46799999999996 99999999999999998762 12578889998 889999999998
Q ss_pred --CEEEEEeCCCcEEEEECCCCceEEEEec--ccC------ccceeeeecCceEEEeeCCCeEEEEEeCCeEEE--EcCC
Q 001349 868 --EMLYSGSLDKTARVWSIGNEEIHCVQVH--DIK------DQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL--LNSS 935 (1094)
Q Consensus 868 --~~LaSgs~DgtI~vWdi~~~~~~~~~~~--~~~------~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l--~~~~ 935 (1094)
.+|++++.||+|++||+.++........ ... ..+..+.+ ..+.+.+ . ... ....+. ..|.
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~-~-~~~--~~~~~~~~~~h~ 177 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRV----PVFRPMD-L-MVE--ASPRRIFANAHT 177 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCC----CEEEEEE-E-EEE--EEEEEEECSCCS
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEe----ccccchh-e-eee--ccceEEeccCCC
Confidence 8999999999999999987532111000 000 01111110 0012221 0 010 111222 2477
Q ss_pred CCceEEEEeC--CEEEEEEcCCeEEEEECCCC-ceeEEec-cceeecCCCCCeEEEEEeCCc-cEEEEEECCCCEEEEEE
Q 001349 936 KYPKCLALVQ--GKVYCGCQDGAIQEIDLATG-TFATIQT-GHRKLLGKANPVHALQVHNGL-VYTASTSLDGAAVKMWS 1010 (1094)
Q Consensus 936 ~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~-~~~~~~~-~~~~~~~h~~~V~sl~fs~~~-~~las~s~Dg~~I~iwd 1010 (1094)
..|.+++|++ ..+++| .||.|++||+.++ .....+. ....+.+|...|++++|+|++ .++++++.|| .|++||
T Consensus 178 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg-~i~iwd 255 (447)
T 3dw8_B 178 YHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKG-TIRLCD 255 (447)
T ss_dssp SCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTS-CEEEEE
T ss_pred cceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCC-eEEEEE
Confidence 8899999986 457777 8999999999843 3332211 012466899999999999998 8999999997 999999
Q ss_pred CCCCeE----EEEecCC-C------------CEEEEEEeCC--EEEEEEcCCeEEEEECCC-CcEEEEecccCCcc----
Q 001349 1011 TSNYNM----VGSLPTL-S------------EVRAMVVSSE--LVYLGCKGGTVEIWDQKR-QIRIETLQTGTSGK---- 1066 (1094)
Q Consensus 1011 ~~~~~~----~~~~~~~-~------------~v~~l~~spd--~l~sgs~dg~I~vwd~~t-~~~~~~l~~~h~~~---- 1066 (1094)
++++.. +..+..+ . .|.+++|+|+ ++++++. |.|++||+.+ ++++..+ .+|...
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~-~~~~~~~~~l 333 (447)
T 3dw8_B 256 MRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETY-QVHEYLRSKL 333 (447)
T ss_dssp TTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCE-ESCGGGTTTH
T ss_pred CcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccccee-eccccccccc
Confidence 999886 6777643 3 8999999998 8888888 9999999997 8888888 466532
Q ss_pred -----------eEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1067 -----------VQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1067 -----------I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
+..++|+|++++|++|+.||.|++||+.
T Consensus 334 ~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~ 372 (447)
T 3dw8_B 334 CSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRN 372 (447)
T ss_dssp HHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETT
T ss_pred cccccccccccceEEEECCCCCEEEEeccCCEEEEEEcC
Confidence 3349999999999999999999999973
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-27 Score=289.22 Aligned_cols=235 Identities=12% Similarity=0.136 Sum_probs=179.9
Q ss_pred EEEEEECCCeEEEEecCCCccee--EEEecccCCCeEEEEEecC------CCEEEEEeCCCcEEEEECCCCceEEEEecc
Q 001349 825 KIFSGHSDGTIKVWTGRGSILHL--IQQIREHTKAVTGLAILQS------GEMLYSGSLDKTARVWSIGNEEIHCVQVHD 896 (1094)
Q Consensus 825 ~LaSgs~Dg~I~vWd~~t~~~~~--~~~l~~H~~~V~sv~fspd------g~~LaSgs~DgtI~vWdi~~~~~~~~~~~~ 896 (1094)
.+++++.||+|+|||+.++.... ..++.+|.+.|++++|+|+ +.+|++|+.||+|++||+.++.........
T Consensus 175 ~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~ 254 (524)
T 2j04_B 175 MFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM 254 (524)
T ss_dssp -------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC
T ss_pred hhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee
Confidence 67889999999999998874222 3456778899999999996 579999999999999999875311000000
Q ss_pred cCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC-CEEEEEEcCCeEEEEECCCCceeEEeccce
Q 001349 897 IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ-GKVYCGCQDGAIQEIDLATGTFATIQTGHR 975 (1094)
Q Consensus 897 ~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~-~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~ 975 (1094)
...+ ...+-.+...|.+++|++ +.|++|+.||+|++||++++.... .
T Consensus 255 ~~~p---------------------------~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~-----~ 302 (524)
T 2j04_B 255 CEKP---------------------------SLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPS-----F 302 (524)
T ss_dssp CCSC---------------------------SEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCS-----E
T ss_pred ecCc---------------------------eEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCce-----E
Confidence 0000 011223456677888764 579999999999999999764321 3
Q ss_pred eecCCCCCeEEE--EEeCCc-cEEEEEECCCCEEEEEECCCCeEEEEec-CC--CCEEEEEEeCC--EEEEEEcCCeEEE
Q 001349 976 KLLGKANPVHAL--QVHNGL-VYTASTSLDGAAVKMWSTSNYNMVGSLP-TL--SEVRAMVVSSE--LVYLGCKGGTVEI 1047 (1094)
Q Consensus 976 ~~~~h~~~V~sl--~fs~~~-~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~--~~v~~l~~spd--~l~sgs~dg~I~v 1047 (1094)
.+.+|...|+++ .|++++ .++++++.|+ +|+|||++++++...+. |. ..|.+++|+|+ .+++++.|++|++
T Consensus 303 ~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~-tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~l 381 (524)
T 2j04_B 303 YDQVHDSYILSVSTAYSDFEDTVVSTVAVDG-YFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRA 381 (524)
T ss_dssp EEECSSSCEEEEEEECCTTSCCEEEEEETTS-EEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEE
T ss_pred EeecccccEEEEEEEcCCCCCeEEEEeccCC-eEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEE
Confidence 467899999999 467877 8999999997 99999999887665554 22 35889999997 7999999999999
Q ss_pred EECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1048 WDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1048 wd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
||++++.++.++ .+|.+.|++++|||+|++|++|+.||+|++||+
T Consensus 382 wd~~~~~~~~~l-~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~ 426 (524)
T 2j04_B 382 VPSRAAFAVHPL-VSRETTITAIGVSRLHPMVLAGSADGSLIITNA 426 (524)
T ss_dssp EETTCTTCCEEE-EECSSCEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred EECcccccceee-ecCCCceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence 999999988888 489999999999999999999999999999986
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.4e-27 Score=266.92 Aligned_cols=262 Identities=9% Similarity=0.057 Sum_probs=201.1
Q ss_pred cccccCcEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecC---------CCcceeEEE
Q 001349 780 PLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGR---------GSILHLIQQ 850 (1094)
Q Consensus 780 ~~~~d~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~---------t~~~~~~~~ 850 (1094)
.+..++..+++|+.||+|++||............+.|.++.|+|+ +++|+.|++|++|+.. ++ ..+..
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~--~~~~~ 119 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTN--KVLRE 119 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTC--CEEEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCCc--ceeEE
Confidence 344678899999999999999987432222222567888889999 9999999999999766 33 33444
Q ss_pred ec-ccCCCeEEEEEec--CCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCC
Q 001349 851 IR-EHTKAVTGLAILQ--SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNG 927 (1094)
Q Consensus 851 l~-~H~~~V~sv~fsp--dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g 927 (1094)
+. +|.+.|.+++|+| +++++++|+.||+|++||+.+++........+...+.++. |+|+|..
T Consensus 120 ~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~-------~~pdg~~-------- 184 (343)
T 3lrv_A 120 IEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGV-------LHKDSLL-------- 184 (343)
T ss_dssp EECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEE-------ECTTSCE--------
T ss_pred eecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEE-------ECCCCCE--------
Confidence 43 6778999999999 9999999999999999999998653333334455677766 7787764
Q ss_pred eEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecC-CCCCeEEEEEeCCccEEEEEECCCCEE
Q 001349 928 KTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLG-KANPVHALQVHNGLVYTASTSLDGAAV 1006 (1094)
Q Consensus 928 ~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~-h~~~V~sl~fs~~~~~las~s~Dg~~I 1006 (1094)
+++|+.||.|++||+++++... ..+.+ |..+|++++|+|++.++++++ ++ .|
T Consensus 185 --------------------lasg~~dg~i~iwd~~~~~~~~-----~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~-~v 237 (343)
T 3lrv_A 185 --------------------LALYSPDGILDVYNLSSPDQAS-----SRFPVDEEAKIKEVKFADNGYWMVVEC-DQ-TV 237 (343)
T ss_dssp --------------------EEEECTTSCEEEEESSCTTSCC-----EECCCCTTSCEEEEEECTTSSEEEEEE-SS-BE
T ss_pred --------------------EEEEcCCCEEEEEECCCCCCCc-----cEEeccCCCCEEEEEEeCCCCEEEEEe-CC-eE
Confidence 7889999999999999988651 23445 899999999999999999998 65 99
Q ss_pred EEEECCCCeEEEEec----CCCCE--EEEEEeCC--EEEEEEc-CCeEEEEECCCCcEEEEecccCCcceEEEEEcC---
Q 001349 1007 KMWSTSNYNMVGSLP----TLSEV--RAMVVSSE--LVYLGCK-GGTVEIWDQKRQIRIETLQTGTSGKVQCMALDD--- 1074 (1094)
Q Consensus 1007 ~iwd~~~~~~~~~~~----~~~~v--~~l~~spd--~l~sgs~-dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Sp--- 1074 (1094)
++||+++++.+..+. +...+ .+++|+|+ ++++++. |+.|+||++.+....... ..+..++|++
T Consensus 238 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~ 312 (343)
T 3lrv_A 238 VCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTA 312 (343)
T ss_dssp EEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-----EEEEECCC----C
T ss_pred EEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-----cCceeEecCcccc
Confidence 999999887655443 12223 46999998 8899888 999999999766543332 4677888888
Q ss_pred CCCEEEEEeCCCcEEEE
Q 001349 1075 NEEFLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1075 dg~~L~sgs~DG~I~iW 1091 (1094)
++..+++++.||.+.+|
T Consensus 313 ~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 313 DFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp CCCEEEEEEETTEEEEE
T ss_pred ccceeEEEecCCceEEE
Confidence 88899999999988876
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.2e-27 Score=294.89 Aligned_cols=248 Identities=16% Similarity=0.202 Sum_probs=204.0
Q ss_pred eeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecC--CCEEEEEeCCCcEEE
Q 001349 806 VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS--GEMLYSGSLDKTARV 881 (1094)
Q Consensus 806 ~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspd--g~~LaSgs~DgtI~v 881 (1094)
..++.+|.+.|++++|+|+ +|++|+.||+|+|||+.++....+..+.+|.+.|++++|+|+ +++|++|+.||+|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 3567899999999999986 899999999999999986555788899999999999999987 999999999999999
Q ss_pred EECCCCceEEE-EecccCccceeeeecCceEEEeeC--CCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEE
Q 001349 882 WSIGNEEIHCV-QVHDIKDQIQNLAVSNSILCFIPQ--GAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQ 958 (1094)
Q Consensus 882 Wdi~~~~~~~~-~~~~~~~~V~~v~~~~~~~~fspd--g~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~ 958 (1094)
||+.++..... ....+...|.++. |+|+ |. .+++|+.||.|+
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~-------~sp~~~~~----------------------------~l~sgs~dg~I~ 126 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQ-------WAPHEYGP----------------------------LLLVASSDGKVS 126 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEE-------ECCGGGCS----------------------------EEEEEETTSEEE
T ss_pred EECCCCcccccccccCCCCCeEEEE-------ECCCCCCC----------------------------EEEEEeCCCcEE
Confidence 99998753333 3334667777776 6776 54 488999999999
Q ss_pred EEECCCCceeEEeccceeecCCCCCeEEEEEeC-------------CccEEEEEECCCCEEEEEECCCC----eEEEEec
Q 001349 959 EIDLATGTFATIQTGHRKLLGKANPVHALQVHN-------------GLVYTASTSLDGAAVKMWSTSNY----NMVGSLP 1021 (1094)
Q Consensus 959 iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~-------------~~~~las~s~Dg~~I~iwd~~~~----~~~~~~~ 1021 (1094)
+||++++..... ..+.+|...|.++.|+| ++.++++++.|| .|++||++++ .....+.
T Consensus 127 vwdl~~~~~~~~----~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~~~~ 201 (753)
T 3jro_A 127 VVEFKENGTTSP----IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN-LVKIWKYNSDAQTYVLESTLE 201 (753)
T ss_dssp EEECCSSSCCCC----EEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTS-CEEEEEEETTTTEEEEEEEEC
T ss_pred EEEeecCCCcce----eEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCC-eEEEEeccCCcccceeeeeec
Confidence 999998754321 35568899999999999 588999999997 9999999876 4555555
Q ss_pred -CCCCEEEEEEeCC-----EEEEEEcCCeEEEEECCCCc-----EEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEE
Q 001349 1022 -TLSEVRAMVVSSE-----LVYLGCKGGTVEIWDQKRQI-----RIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQA 1090 (1094)
Q Consensus 1022 -~~~~v~~l~~spd-----~l~sgs~dg~I~vwd~~t~~-----~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~i 1090 (1094)
|...|.+++|+|+ ++++|+.||.|++||+.++. ..... .+|.+.|++++|+|+|++|++|+.||.|++
T Consensus 202 ~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~l~s~s~Dg~I~v 280 (753)
T 3jro_A 202 GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKE-EKFPDVLWRASWSLSGNVLALSGGDNKVTL 280 (753)
T ss_dssp CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSS-SCCSSCCCCEEECTTTCCEEEECSSSCEEC
T ss_pred CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEecc-CCCCCceEEEEEcCCCCEEEEEcCCCEEEE
Confidence 7889999999986 69999999999999998864 22222 358889999999999999999999999999
Q ss_pred EeCC
Q 001349 1091 WGLS 1094 (1094)
Q Consensus 1091 Wdls 1094 (1094)
|++.
T Consensus 281 wd~~ 284 (753)
T 3jro_A 281 WKEN 284 (753)
T ss_dssp CBCC
T ss_pred EecC
Confidence 9974
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-25 Score=264.00 Aligned_cols=234 Identities=26% Similarity=0.433 Sum_probs=203.2
Q ss_pred cccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 001349 809 DSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE 888 (1094)
Q Consensus 809 ~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~ 888 (1094)
..+|...|+++.|.++++++|+.||+|++||+.++ +.+..+.+|.+.|++++| ++++|++|+.||+|++||+.+++
T Consensus 129 ~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~ 204 (435)
T 1p22_A 129 RSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTL--ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE 204 (435)
T ss_dssp CCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSC--CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC
T ss_pred ccCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCC--eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc
Confidence 34678899999998889999999999999999998 788999999999999998 78999999999999999999874
Q ss_pred eEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCcee
Q 001349 889 IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFA 968 (1094)
Q Consensus 889 ~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~ 968 (1094)
... ... .+...|.++.++++.+++|+.||.|++||+.++...
T Consensus 205 ~~~-~~~-------------------------------------~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~ 246 (435)
T 1p22_A 205 MLN-TLI-------------------------------------HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI 246 (435)
T ss_dssp EEE-EEC-------------------------------------CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCC
T ss_pred EEE-EEc-------------------------------------CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCc
Confidence 211 111 123445666666778999999999999999987754
Q ss_pred EEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCCEEEEEEcCCeEEE
Q 001349 969 TIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSELVYLGCKGGTVEI 1047 (1094)
Q Consensus 969 ~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd~l~sgs~dg~I~v 1047 (1094)
... ..+.+|...|.++.| ++.++++++.|| .|++||+++++.+..+. |...+.++.++++++++|+.||.|++
T Consensus 247 ~~~---~~~~~~~~~v~~~~~--~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~i 320 (435)
T 1p22_A 247 TLR---RVLVGHRAAVNVVDF--DDKYIVSASGDR-TIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRL 320 (435)
T ss_dssp EEE---EEECCCSSCEEEEEE--ETTEEEEEETTS-EEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEE
T ss_pred eee---eEecCCCCcEEEEEe--CCCEEEEEeCCC-eEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEE
Confidence 221 356789999999999 567889999886 99999999999999988 77889999999999999999999999
Q ss_pred EECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1048 WDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1048 wd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
||+.+++++..+ .+|...|++++| ++.+|++|+.||+|++||+
T Consensus 321 wd~~~~~~~~~~-~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 321 WDIECGACLRVL-EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp EETTTCCEEEEE-CCCSSCEEEEEC--CSSEEEEEETTSCEEEEEH
T ss_pred EECCCCCEEEEE-eCCcCcEEEEEe--cCCEEEEEeCCCcEEEEEC
Confidence 999999999999 589999999999 7899999999999999996
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-26 Score=269.94 Aligned_cols=246 Identities=16% Similarity=0.180 Sum_probs=200.2
Q ss_pred eecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCC--------CcceeEEEecccCCCeEEEEEecCCC-EEEEEe
Q 001349 807 HVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRG--------SILHLIQQIREHTKAVTGLAILQSGE-MLYSGS 874 (1094)
Q Consensus 807 ~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t--------~~~~~~~~l~~H~~~V~sv~fspdg~-~LaSgs 874 (1094)
.....|.+.|++++|+|+ +|++|+.||.|++||+.+ +....+..+.+|...|++++|+|++. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 345679999999999995 899999999999999986 22367788899999999999999988 999999
Q ss_pred CCCcEEEEECCCCce--E----EEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEE
Q 001349 875 LDKTARVWSIGNEEI--H----CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKV 948 (1094)
Q Consensus 875 ~DgtI~vWdi~~~~~--~----~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l 948 (1094)
.||+|++||+.++.. . ......+...|.++. |+|++. ..+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~-------~~p~~~---------------------------~~l 247 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA-------WHLLHE---------------------------SLF 247 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEE-------ECSSCT---------------------------TEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeE-------EeCCCC---------------------------CEE
Confidence 999999999987421 0 011112333344443 333221 258
Q ss_pred EEEEcCCeEEEEECCCCc---eeEEeccceeecCCCCCeEEEEEeCCcc-EEEEEECCCCEEEEEECCC-CeEEEEec-C
Q 001349 949 YCGCQDGAIQEIDLATGT---FATIQTGHRKLLGKANPVHALQVHNGLV-YTASTSLDGAAVKMWSTSN-YNMVGSLP-T 1022 (1094)
Q Consensus 949 ~sgs~Dg~I~iwDl~~~~---~~~~~~~~~~~~~h~~~V~sl~fs~~~~-~las~s~Dg~~I~iwd~~~-~~~~~~~~-~ 1022 (1094)
++++.||.|++||++++. .. ..+..|...|++++|+|++. ++++++.|| .|++||+++ +.++..+. |
T Consensus 248 ~s~~~dg~i~i~d~~~~~~~~~~------~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg-~v~vwd~~~~~~~~~~~~~h 320 (430)
T 2xyi_A 248 GSVADDQKLMIWDTRNNNTSKPS------HTVDAHTAEVNCLSFNPYSEFILATGSADK-TVALWDLRNLKLKLHSFESH 320 (430)
T ss_dssp EEEETTSEEEEEETTCSCSSSCS------EEEECCSSCEEEEEECSSCTTEEEEEETTS-EEEEEETTCTTSCSEEEECC
T ss_pred EEEeCCCeEEEEECCCCCCCcce------eEeecCCCCeEEEEeCCCCCCEEEEEeCCC-eEEEEeCCCCCCCeEEeecC
Confidence 899999999999999873 33 34568899999999999876 688888886 999999997 56677776 7
Q ss_pred CCCEEEEEEeCC---EEEEEEcCCeEEEEECCC--------------CcEEEEecccCCcceEEEEEcCCCC-EEEEEeC
Q 001349 1023 LSEVRAMVVSSE---LVYLGCKGGTVEIWDQKR--------------QIRIETLQTGTSGKVQCMALDDNEE-FLVIGTS 1084 (1094)
Q Consensus 1023 ~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t--------------~~~~~~l~~~h~~~I~~l~~Spdg~-~L~sgs~ 1084 (1094)
...|.+++|+|+ ++++++.||.|+|||+.. .+.+..+ .+|.+.|++++|+|+++ +|++++.
T Consensus 321 ~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~s~ 399 (430)
T 2xyi_A 321 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH-GGHTAKISDFSWNPNEPWIICSVSE 399 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEEC-CCCSSCEEEEEECSSSTTEEEEEET
T ss_pred CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEc-CCCCCCceEEEECCCCCCEEEEEEC
Confidence 889999999997 699999999999999987 3566666 58999999999999999 9999999
Q ss_pred CCcEEEEeCC
Q 001349 1085 DGRIQAWGLS 1094 (1094)
Q Consensus 1085 DG~I~iWdls 1094 (1094)
||.|++|++.
T Consensus 400 dg~i~iw~~~ 409 (430)
T 2xyi_A 400 DNIMQVWQMA 409 (430)
T ss_dssp TSEEEEEEEC
T ss_pred CCCEEEeEcc
Confidence 9999999974
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-25 Score=259.70 Aligned_cols=305 Identities=12% Similarity=0.118 Sum_probs=208.9
Q ss_pred hhhccccccccc-cCcEEEEeeCCCCeEEEeCCcc--eeec-------------ccCCCcEEEEEEeC-C--EEEEEECC
Q 001349 772 LRELRKYSPLAF-EMVKVLSNGHDSSADFWNHREL--VHVD-------------SSENGKVLSIACFR-D--KIFSGHSD 832 (1094)
Q Consensus 772 ~~~~~~~~~~~~-d~~~l~s~s~dg~I~vWd~~~~--~~~~-------------~~h~~~V~~l~fsp-d--~LaSgs~D 832 (1094)
|...+....+.+ ++.++++++.||.|++||.... .... .+|.+.|.+++|+| + +|++++.|
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 121 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD 121 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC
Confidence 334445566777 8999999999999999998731 1111 35999999999998 4 89999999
Q ss_pred CeEEEEecCCCcceeEEEecccCCCeEEEEEecC---CCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCc
Q 001349 833 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS---GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNS 909 (1094)
Q Consensus 833 g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspd---g~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~ 909 (1094)
|.|++||+.++ ..+..+. |...+.++.|++. +.++++++.||.|++||+.+++.. .....+...|.++.
T Consensus 122 ~~i~iwd~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~v~~~~---- 193 (408)
T 4a11_B 122 KTLKVWDTNTL--QTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS-HILQGHRQEILAVS---- 193 (408)
T ss_dssp SEEEEEETTTT--EEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC-EEECCCCSCEEEEE----
T ss_pred CeEEEeeCCCC--ccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee-eeecCCCCcEEEEE----
Confidence 99999999998 5666664 7889999999984 459999999999999999987632 22334677888888
Q ss_pred eEEEeeCCCe-EEEEEeCCeEEEEcC----------------------------CCCceEEEEeC--CEEEEEEcCCeEE
Q 001349 910 ILCFIPQGAG-IKVHLRNGKTKLLNS----------------------------SKYPKCLALVQ--GKVYCGCQDGAIQ 958 (1094)
Q Consensus 910 ~~~fspdg~~-l~~~~~~g~i~l~~~----------------------------~~~v~~l~~s~--~~l~sgs~Dg~I~ 958 (1094)
|+|++.. +++++.+|.+++|+. ...|.++.|++ ..+++++.||.|+
T Consensus 194 ---~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 270 (408)
T 4a11_B 194 ---WSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMR 270 (408)
T ss_dssp ---ECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred ---ECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEE
Confidence 9999995 889999999999974 24588999986 4699999999999
Q ss_pred EEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--E
Q 001349 959 EIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--L 1035 (1094)
Q Consensus 959 iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~ 1035 (1094)
+||+.++............................. ++.++.++ .|++||+.+++.+..+. |...|.+++|+|+ +
T Consensus 271 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 348 (408)
T 4a11_B 271 LWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSE-FVFVPYGS-TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQE 348 (408)
T ss_dssp EEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSC-EEEEEETT-EEEEEETTTCCEEEEECCCSSCEEEEEEETTTTE
T ss_pred EEECCCCccceeccccccccccccceeEEecCCCce-EEEEecCC-EEEEEECcCCcceeeeccCCCeEEEEEEcCCCCE
Confidence 999999876543322111111111122222233344 44445565 99999999999999998 7789999999998 8
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcC-CCCEEEEEeCCCcEEEEeC
Q 001349 1036 VYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDD-NEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1036 l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Sp-dg~~L~sgs~DG~I~iWdl 1093 (1094)
+++|+.||.|++||+.+++.+.... .+. ....+.+ +...+.+++.||.+++|+.
T Consensus 349 l~s~~~dg~i~iw~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~W~~ 403 (408)
T 4a11_B 349 LYSGSRDCNILAWVPSLYEPVPDDD-ETT---TKSQLNPAFEDAWSSSDEEGGTSAWSH 403 (408)
T ss_dssp EEEEETTSCEEEEEECC------------------------------------------
T ss_pred EEEECCCCeEEEEeCCCCCccCCCC-ceE---eccccccccceeecccCccCceeecCC
Confidence 9999999999999999998876653 221 1122333 3345567778999999975
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-26 Score=266.93 Aligned_cols=273 Identities=12% Similarity=0.118 Sum_probs=187.6
Q ss_pred cccCcEEEEeeCCCCeEEEeCCcc-----------eeecccCCCcEEEEEEeC--------------------C--EEEE
Q 001349 782 AFEMVKVLSNGHDSSADFWNHREL-----------VHVDSSENGKVLSIACFR--------------------D--KIFS 828 (1094)
Q Consensus 782 ~~d~~~l~s~s~dg~I~vWd~~~~-----------~~~~~~h~~~V~~l~fsp--------------------d--~LaS 828 (1094)
.++...++..+.++.|.+|+.... ......|...+..+.|++ + ++++
T Consensus 27 ~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las 106 (393)
T 4gq1_A 27 SPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLAC 106 (393)
T ss_dssp SGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CCEEEEEEEE
T ss_pred CCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecCCCCCEEEE
Confidence 344445666667888999975410 011122344555555442 2 7999
Q ss_pred EECCCeEEEEecCCCcce---eEEEecccCCCeEEEEEec--------CCCEEEEEeCCCcEEEEECCCCceEEEEeccc
Q 001349 829 GHSDGTIKVWTGRGSILH---LIQQIREHTKAVTGLAILQ--------SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDI 897 (1094)
Q Consensus 829 gs~Dg~I~vWd~~t~~~~---~~~~l~~H~~~V~sv~fsp--------dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~ 897 (1094)
|+.|++|++||..++... .+..+.+|.+.|++++|+| ||++|+|||.|++|+|||+.++. .......+
T Consensus 107 ~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~-~~~~~~~~ 185 (393)
T 4gq1_A 107 VCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG-PILAGYPL 185 (393)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE-EEEEEEEC
T ss_pred EeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc-eeeeecCC
Confidence 999999999999987322 2344689999999999998 88999999999999999998764 33444455
Q ss_pred CccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccc---
Q 001349 898 KDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGH--- 974 (1094)
Q Consensus 898 ~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~--- 974 (1094)
..++.+++ |+|++.. .+++|+.||+|++||+++++........
T Consensus 186 ~~~v~~v~-------~~p~~~~---------------------------~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~ 231 (393)
T 4gq1_A 186 SSPGISVQ-------FRPSNPN---------------------------QLIVGERNGNIRIFDWTLNLSAEENSQTELV 231 (393)
T ss_dssp SSCEEEEE-------EETTEEE---------------------------EEEEEETTSEEEEEETTCCC----------C
T ss_pred CCCcEEEE-------ECCCCCc---------------------------eEEecCCCCEEEEEECCCCcccccccccCCc
Confidence 66777776 7776643 3888999999999999887654322110
Q ss_pred ----------------eeecCCCCCeEEEEEe-CCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEE--------
Q 001349 975 ----------------RKLLGKANPVHALQVH-NGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRA-------- 1028 (1094)
Q Consensus 975 ----------------~~~~~h~~~V~sl~fs-~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~-------- 1028 (1094)
....+|...+.++.|+ +++..+++++.|+ ++++||+..+.....+. +...+..
T Consensus 232 ~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~-~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~ 310 (393)
T 4gq1_A 232 KNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSG-AWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQ 310 (393)
T ss_dssp SCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTS-EEEEEEC-------------------CCSCSEE
T ss_pred ccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCC-CEEEEECccCCCCceEeeecCccccEEEccccc
Confidence 1234688889999997 7999999999886 99999998776555443 2222222
Q ss_pred ----------EEEeCC----EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1029 ----------MVVSSE----LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1029 ----------l~~spd----~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
..+++. ++++|+.||+|++||+.+++....+ .+|...|++++|||||++|++++.|| +.+|.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~-~~~~~~V~svafspdG~~LA~as~~G-v~lvr 386 (393)
T 4gq1_A 311 GISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIP-IQLGMPIVDFCWHQDGSHLAIATEGS-VLLTR 386 (393)
T ss_dssp EECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEE-EECSSCEEEEEECTTSSEEEEEESSE-EEEEE
T ss_pred cccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEe-cCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEE
Confidence 233332 5777889999999999999988877 47888999999999999999999777 44554
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-25 Score=255.66 Aligned_cols=272 Identities=12% Similarity=0.152 Sum_probs=199.7
Q ss_pred cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEE-EEEeCCCcEE
Q 001349 804 ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEML-YSGSLDKTAR 880 (1094)
Q Consensus 804 ~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~L-aSgs~DgtI~ 880 (1094)
..+.....|.+.|++++|+|| +|++|+.|| ++|||..++ ...... +...+..+.+.++++.+ ++++.|++|+
T Consensus 10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 84 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPV--AHIMSQ--EMRHLSKVRMLHRTNYVAFVTGVKEVVH 84 (355)
T ss_dssp ---------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTE--EEEEEE--ECSCCCEEEECTTSSEEEEECSSTTEEE
T ss_pred CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCc--ceeeee--ecCCeEEEEEcCCCCEEEEEECCccEEE
Confidence 344456789999999999997 888887765 789999877 444333 22358888999988877 5677889999
Q ss_pred EEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCC----------ceEEEEeCCEEEE
Q 001349 881 VWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKY----------PKCLALVQGKVYC 950 (1094)
Q Consensus 881 vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~----------v~~l~~s~~~l~s 950 (1094)
+||+.+++. +....+...|.++. |++++ +++ ..++.+++|+.... ...+.++++.+++
T Consensus 85 iWd~~~~~~--~~~~~~~~~v~~v~-------~~~~~--~~~-~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~ 152 (355)
T 3vu4_A 85 IWDDVKKQD--VSRIKVDAPVKDLF-------LSREF--IVV-SYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVY 152 (355)
T ss_dssp EEETTTTEE--EEEEECSSCEEEEE-------ECSSE--EEE-EETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEE
T ss_pred EEECCCCcE--EEEEECCCceEEEE-------EcCCE--EEE-EEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEE
Confidence 999999853 33344567888877 55443 222 34788999987544 2234455567666
Q ss_pred --EEcCCeEEEEECCCCceeEE---------ecc-ceeecCCCCCeEEEEEeCCccEEEEEECCCCE-EEEEECCCCeEE
Q 001349 951 --GCQDGAIQEIDLATGTFATI---------QTG-HRKLLGKANPVHALQVHNGLVYTASTSLDGAA-VKMWSTSNYNMV 1017 (1094)
Q Consensus 951 --gs~Dg~I~iwDl~~~~~~~~---------~~~-~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~-I~iwd~~~~~~~ 1017 (1094)
|+.||.|++||+.++..... ... ...+.+|...|++++|+|++.++++++.|+ + |++||+++++++
T Consensus 153 ~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~-~~v~iwd~~~~~~~ 231 (355)
T 3vu4_A 153 SNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDG-TIIRVFKTEDGVLV 231 (355)
T ss_dssp EESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTC-SEEEEEETTTCCEE
T ss_pred eCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCC-CEEEEEECCCCcEE
Confidence 58999999999998651100 000 256789999999999999999999999997 7 999999999999
Q ss_pred EEec---CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcE--EEE--------------------ecccCCcceEEE
Q 001349 1018 GSLP---TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIR--IET--------------------LQTGTSGKVQCM 1070 (1094)
Q Consensus 1018 ~~~~---~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~--~~~--------------------l~~~h~~~I~~l 1070 (1094)
..+. |...|.+++|+|+ ++++|+.|++|++||+..+.. ... +...+......+
T Consensus 232 ~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (355)
T 3vu4_A 232 REFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKI 311 (355)
T ss_dssp EEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEE
T ss_pred EEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEE
Confidence 9997 7889999999998 899999999999999976531 111 111122234779
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1071 ALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1071 ~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
+|++||++|++++.||++++|++
T Consensus 312 a~~~d~~~l~~~~~dg~~~~~~~ 334 (355)
T 3vu4_A 312 AWISESSLVVVWPHTRMIETFKV 334 (355)
T ss_dssp EESSSSEEEEEETTTTEEEEEEE
T ss_pred EEeCCCCEEEEEeCCCeEEEEEE
Confidence 99999999999999999999986
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=258.69 Aligned_cols=257 Identities=15% Similarity=0.167 Sum_probs=202.2
Q ss_pred HhhhccccccccccCcEEEEeeCCCCeEEEeCC----cceeecccCCCcEEEEEEeC----CEEEEEECCCeEEEEecCC
Q 001349 771 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFR----DKIFSGHSDGTIKVWTGRG 842 (1094)
Q Consensus 771 ~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~----~~~~~~~~h~~~V~~l~fsp----d~LaSgs~Dg~I~vWd~~t 842 (1094)
+|...+....+.+++.++++++.||.|++|+.. .....+.+|.+.|++++|++ ++|++|+.||+|++||+.+
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 88 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 88 (379)
T ss_dssp ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEET
T ss_pred CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCC
Confidence 344555667788899999999999999999986 34567789999999999984 4999999999999999999
Q ss_pred CcceeEEEecccCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCc-eEEEEecccCccceeeeecCceEEEeeCCCe
Q 001349 843 SILHLIQQIREHTKAVTGLAILQS--GEMLYSGSLDKTARVWSIGNEE-IHCVQVHDIKDQIQNLAVSNSILCFIPQGAG 919 (1094)
Q Consensus 843 ~~~~~~~~l~~H~~~V~sv~fspd--g~~LaSgs~DgtI~vWdi~~~~-~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~ 919 (1094)
+....+..+.+|...|++++|+|+ +.+|++++.||+|++||+.++. ........+...|.++. |+|....
T Consensus 89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~ 161 (379)
T 3jrp_A 89 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS-------WAPATIE 161 (379)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEE-------ECCCC--
T ss_pred CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEE-------EcCcccc
Confidence 855588888999999999999999 9999999999999999999874 23334445667777777 5553211
Q ss_pred EEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC---ccEE
Q 001349 920 IKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG---LVYT 996 (1094)
Q Consensus 920 l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~---~~~l 996 (1094)
..... .....+..+++|+.||.|++||++++....... ..+.+|...|++++|+|+ +.++
T Consensus 162 ~~~~~---------------~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~h~~~v~~~~~sp~~~~~~~l 224 (379)
T 3jrp_A 162 EDGEH---------------NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE--STLEGHSDWVRDVAWSPTVLLRSYL 224 (379)
T ss_dssp -----------------------CTTCEEEEEETTSCEEEEEEETTTTEEEEE--EEECCCSSCEEEEEECCCCSSSEEE
T ss_pred ccccc---------------cCCCCCCEEEEEeCCCeEEEEEecCCCcceeeE--EEEecccCcEeEEEECCCCCCCCeE
Confidence 00000 000012358999999999999998776432222 467789999999999999 8999
Q ss_pred EEEECCCCEEEEEECCCCe---EEEEec---CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCC
Q 001349 997 ASTSLDGAAVKMWSTSNYN---MVGSLP---TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKR 1052 (1094)
Q Consensus 997 as~s~Dg~~I~iwd~~~~~---~~~~~~---~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t 1052 (1094)
++++.|| .|++||+.++. ....+. +...|.+++|+|+ ++++++.||.|++||+..
T Consensus 225 ~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 225 ASVSQDR-TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp EEEETTS-CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred EEEeCCC-EEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 9999997 99999998863 222222 6788999999998 899999999999999874
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-25 Score=253.01 Aligned_cols=259 Identities=14% Similarity=0.196 Sum_probs=202.3
Q ss_pred HhhhccccccccccCcEEEEeeCCCCeEEEeCCc------ceeecccCCCcEEEEEEeC---C-EEEEEECCCeEEEEec
Q 001349 771 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE------LVHVDSSENGKVLSIACFR---D-KIFSGHSDGTIKVWTG 840 (1094)
Q Consensus 771 ~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~------~~~~~~~h~~~V~~l~fsp---d-~LaSgs~Dg~I~vWd~ 840 (1094)
+|...+....+.+++.+|++++.||.|++||... ....+.+|.+.|++++|+| . +|++|+.||+|++||+
T Consensus 9 gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~ 88 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEE 88 (351)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred ccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEec
Confidence 3445566677888999999999999999999872 4556678999999999997 2 9999999999999999
Q ss_pred CCCcc-------eeEEEecccCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceE
Q 001349 841 RGSIL-------HLIQQIREHTKAVTGLAILQS--GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSIL 911 (1094)
Q Consensus 841 ~t~~~-------~~~~~l~~H~~~V~sv~fspd--g~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~ 911 (1094)
.++.. ..+..+.+|.+.|++++|+|+ +++|++++.||+|++||+.+++.... ......+..+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~~~~~~------ 160 (351)
T 3f3f_A 89 DPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRS--WTLTSEMKVLS------ 160 (351)
T ss_dssp CTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTC--CEEEEEEESCS------
T ss_pred CCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcc--ccccccccccc------
Confidence 87632 457888899999999999999 99999999999999999988641100 00000000000
Q ss_pred EEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC-----CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEE
Q 001349 912 CFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ-----GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHA 986 (1094)
Q Consensus 912 ~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~-----~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~s 986 (1094)
+.+. .+...+.++.+++ ..+++++.|+.+.+|+...+..... ..+.+|...|++
T Consensus 161 -~~~~----------------~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~h~~~i~~ 219 (351)
T 3f3f_A 161 -IPPA----------------NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA----AKLPGHKSLIRS 219 (351)
T ss_dssp -CCCS----------------SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE----EECCCCCSCEEE
T ss_pred -cccC----------------CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee----eecCCCCcceeE
Confidence 1111 1234456666643 4699999999998898887765322 456789999999
Q ss_pred EEEeCCc----cEEEEEECCCCEEEEEECCCC----------------------------------------------eE
Q 001349 987 LQVHNGL----VYTASTSLDGAAVKMWSTSNY----------------------------------------------NM 1016 (1094)
Q Consensus 987 l~fs~~~----~~las~s~Dg~~I~iwd~~~~----------------------------------------------~~ 1016 (1094)
++|+|++ .++++++.|| .|++||++++ ..
T Consensus 220 ~~~~p~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (351)
T 3f3f_A 220 ISWAPSIGRWYQLIATGCKDG-RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVEL 298 (351)
T ss_dssp EEECCCSSCSSEEEEEEETTS-CEEEEEEEECC---------------------------------------CCSEEEEE
T ss_pred EEECCCCCCcceEEEEEcCCC-eEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccE
Confidence 9999998 8999999997 9999999864 45
Q ss_pred EEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEe
Q 001349 1017 VGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETL 1059 (1094)
Q Consensus 1017 ~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l 1059 (1094)
+..+. |...|++++|+|+ ++++|+.||.|++||+.+++.+..+
T Consensus 299 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 299 LSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp EEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred EEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 55555 6788999999998 8999999999999999988765554
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=272.75 Aligned_cols=261 Identities=11% Similarity=0.065 Sum_probs=204.7
Q ss_pred hccccccccccCcEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecc
Q 001349 774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIRE 853 (1094)
Q Consensus 774 ~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~ 853 (1094)
..+....+++||.++|+++.|++|+ |.... ..+.+|.+.|.+++|+|+- .++++.+|+.... .+..+ .
T Consensus 16 ~~v~sv~~SpDG~~iASas~D~TV~--d~~~~-~~l~gh~~~v~~V~FsPdg-----~~~~~~~~~~~~~---~~~~~-~ 83 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTFPDISIG--QPKYA-KDINCNSKNLFHVKEFPLE-----FENKLDFELAQQN---GLLNS-Q 83 (588)
T ss_dssp SSSCCEEECTTSCEEEECSSSEEEE--EECCC-SCCSSBGGGTEEEEEECCC-----CCCTTTTSCCCSS---CSSTT-S
T ss_pred ccEEEEEECCCCCEEEEEcCCceee--ccccc-ceecCCCccEEEEEECCCC-----CcceEEEEeCCCc---eEeec-C
Confidence 3455788999999999999999999 65433 3447999999999999975 4555555554332 22233 5
Q ss_pred cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCc-----cceeeeecCceEEEeeCCCeEEEEEeCCe
Q 001349 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKD-----QIQNLAVSNSILCFIPQGAGIKVHLRNGK 928 (1094)
Q Consensus 854 H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~-----~V~~v~~~~~~~~fspdg~~l~~~~~~g~ 928 (1094)
|...|++++|||||++||+++.||+|++||..+ ++....+.. .+.+++ |+|||+.
T Consensus 84 ~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~----~l~~l~~~~~~~~~sv~sva-------fSPDG~~--------- 143 (588)
T 2j04_A 84 PVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK----MLTNLDSKGNLSSRTYHCFE-------WNPIESS--------- 143 (588)
T ss_dssp CSCCEEEEEECSSSSCEEEEETTSCEEEEETTE----EEEECCCSSCSTTTCEEEEE-------ECSSSSC---------
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc----eeeeccCCCccccccEEEEE-------EcCCCCE---------
Confidence 688999999999999999999999999999544 222222333 377766 8999985
Q ss_pred EEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCce-------eEEeccceeecCCCCCeEEEEEeCCccEEEEEEC
Q 001349 929 TKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTF-------ATIQTGHRKLLGKANPVHALQVHNGLVYTASTSL 1001 (1094)
Q Consensus 929 i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~-------~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~ 1001 (1094)
|++|+.||+|++||+.++.. +..+. ....+|...|.+++|+|++ +++++.
T Consensus 144 -------------------LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~--~~~~gh~~~V~sVawSPdg--Laass~ 200 (588)
T 2j04_A 144 -------------------IVVGNEDGELQFFSIRKNSENTPEFYFESSIR--LSDAGSKDWVTHIVWYEDV--LVAALS 200 (588)
T ss_dssp -------------------EEEEETTSEEEEEECCCCTTTCCCCEEEEEEE--CSCTTCCCCEEEEEEETTE--EEEEET
T ss_pred -------------------EEEEcCCCEEEEEECCCCccccccceeeeeee--cccccccccEEEEEEcCCc--EEEEeC
Confidence 88999999999999998753 22111 1136788999999999999 667777
Q ss_pred CCCEEEEEECCCCeE---EEEec--CCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEE--cC
Q 001349 1002 DGAAVKMWSTSNYNM---VGSLP--TLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMAL--DD 1074 (1094)
Q Consensus 1002 Dg~~I~iwd~~~~~~---~~~~~--~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~--Sp 1074 (1094)
|+ +|++||+.++.. .+++. |...|.+++|+...+++++ +++|++||+.+++..... .+|.+.|++++| +|
T Consensus 201 D~-tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~~~~~~-~gh~~~V~~va~~~s~ 277 (588)
T 2j04_A 201 NN-SVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYSISSLK-TGSLENFHIIPLNHEK 277 (588)
T ss_dssp TC-CEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTEEEEEE-CSCCSCCCEEEETTCS
T ss_pred CC-eEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCeEEEEE-cCCCceEEEEEeeeCC
Confidence 75 999999988773 35563 5678999999955888887 699999999988774444 379999999999 99
Q ss_pred CCCEEEEEeCCCcEEEEeC
Q 001349 1075 NEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1075 dg~~L~sgs~DG~I~iWdl 1093 (1094)
|+..|++++.||+ ++|.+
T Consensus 278 d~~~La~a~edG~-klw~~ 295 (588)
T 2j04_A 278 ESTILLMSNKTSY-KVLLE 295 (588)
T ss_dssp SCEEEEECSSCEE-EEEES
T ss_pred CCCEEEEEcCCCC-EEEee
Confidence 9999999999999 99986
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.4e-25 Score=257.15 Aligned_cols=253 Identities=17% Similarity=0.190 Sum_probs=196.4
Q ss_pred ccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEec
Q 001349 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIR 852 (1094)
Q Consensus 775 ~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~ 852 (1094)
.+....+.+++.++++|+.||.|++||.. .....+.+|.+.|.+++|+++++++|+.||+|++||+.... ..+..+.
T Consensus 136 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~ 214 (401)
T 4aez_A 136 YVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIAN-HQIGTLQ 214 (401)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSS-CEEEEEE
T ss_pred CEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCc-ceeeEEc
Confidence 34456677899999999999999999987 45677789999999999999999999999999999998542 5778889
Q ss_pred ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEE
Q 001349 853 EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLL 932 (1094)
Q Consensus 853 ~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~ 932 (1094)
+|.+.|.+++|+|++++|++|+.||+|++||+.+++. ......+...|.++. |+|++..
T Consensus 215 ~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~v~~~~-------~~p~~~~------------- 273 (401)
T 4aez_A 215 GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIP-KFTKTNHNAAVKAVA-------WCPWQSN------------- 273 (401)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSE-EEEECCCSSCCCEEE-------ECTTSTT-------------
T ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCc-cEEecCCcceEEEEE-------ECCCCCC-------------
Confidence 9999999999999999999999999999999998752 223334566777776 7776654
Q ss_pred cCCCCceEEEEeCCEEEEEE--cCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEE--CCCCEEEE
Q 001349 933 NSSKYPKCLALVQGKVYCGC--QDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS--LDGAAVKM 1008 (1094)
Q Consensus 933 ~~~~~v~~l~~s~~~l~sgs--~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s--~Dg~~I~i 1008 (1094)
.+++|+ .||.|++||+.+++....+ .+...|.+++|++++.++++++ .|| .|++
T Consensus 274 --------------ll~~~~gs~d~~i~i~d~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~g~~dg-~i~v 331 (401)
T 4aez_A 274 --------------LLATGGGTMDKQIHFWNAATGARVNTV-------DAGSQVTSLIWSPHSKEIMSTHGFPDN-NLSI 331 (401)
T ss_dssp --------------EEEEECCTTTCEEEEEETTTCCEEEEE-------ECSSCEEEEEECSSSSEEEEEECTTTC-EEEE
T ss_pred --------------EEEEecCCCCCEEEEEECCCCCEEEEE-------eCCCcEEEEEECCCCCeEEEEeecCCC-cEEE
Confidence 255554 7999999999999877433 2457899999999999998854 665 9999
Q ss_pred EECCCCeEEEEe--c-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEE
Q 001349 1009 WSTSNYNMVGSL--P-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMA 1071 (1094)
Q Consensus 1009 wd~~~~~~~~~~--~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~ 1071 (1094)
||+.++...... . |...|.+++|+|+ ++++|+.||.|++||+.+++.+......+......+.
T Consensus 332 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~i~ 399 (401)
T 4aez_A 332 WSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPIPITKTPSSSIT 399 (401)
T ss_dssp EEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------------------
T ss_pred EecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccccccCCCcccee
Confidence 999987665543 3 7788999999998 8999999999999999999877665333333444443
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-24 Score=252.64 Aligned_cols=275 Identities=12% Similarity=0.127 Sum_probs=216.3
Q ss_pred ccccccCcEEEEeeCCCCeEEEeCCc--cee-----ecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEE
Q 001349 779 SPLAFEMVKVLSNGHDSSADFWNHRE--LVH-----VDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQ 849 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~dg~I~vWd~~~--~~~-----~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~ 849 (1094)
..+.+++..+++++.++.|++||..+ ... .+.+|.+.|.+++|+++ ++++++.||.|++||+.++ +.+.
T Consensus 128 ~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~--~~~~ 205 (433)
T 3bws_A 128 VRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL--AYKA 205 (433)
T ss_dssp CEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC--CEEE
T ss_pred EEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc--eEEE
Confidence 44555677888888899999999873 223 34589999999999875 8999999999999999988 6788
Q ss_pred EecccCCCeEEEEEecCCCEEE-EEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCe
Q 001349 850 QIREHTKAVTGLAILQSGEMLY-SGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 928 (1094)
Q Consensus 850 ~l~~H~~~V~sv~fspdg~~La-Sgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~ 928 (1094)
.+..|...+.+++|+|++++++ +++.|++|++||+.+++ ..........+.++. |+|+|+.++++..++.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~-------~~~~g~~l~~~~~~~~ 276 (433)
T 3bws_A 206 TVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL--EIRKTDKIGLPRGLL-------LSKDGKELYIAQFSAS 276 (433)
T ss_dssp EEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE--EEEECCCCSEEEEEE-------ECTTSSEEEEEEEESC
T ss_pred EEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc--EEEEecCCCCceEEE-------EcCCCCEEEEEECCCC
Confidence 8889999999999999999885 45579999999999874 333333344455555 8888876433322110
Q ss_pred EEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEE-EEEECCCCEEE
Q 001349 929 TKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYT-ASTSLDGAAVK 1007 (1094)
Q Consensus 929 i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~l-as~s~Dg~~I~ 1007 (1094)
.+. +.||.|++||+.+++..... .|...+..++|+|++..+ ++++.++ .|+
T Consensus 277 ------------------~~~--~~dg~i~~~d~~~~~~~~~~-------~~~~~~~~~~~~~~g~~l~~~~~~~~-~v~ 328 (433)
T 3bws_A 277 ------------------NQE--SGGGRLGIYSMDKEKLIDTI-------GPPGNKRHIVSGNTENKIYVSDMCCS-KIE 328 (433)
T ss_dssp ------------------TTC--SCCEEEEEEETTTTEEEEEE-------EEEECEEEEEECSSTTEEEEEETTTT-EEE
T ss_pred ------------------ccc--cCCCeEEEEECCCCcEEeec-------cCCCCcceEEECCCCCEEEEEecCCC-EEE
Confidence 000 15889999999988765332 344578899999998654 5555664 999
Q ss_pred EEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEc---------------CCeEEEEECCCCcEEEEecccCCcceEEE
Q 001349 1008 MWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCK---------------GGTVEIWDQKRQIRIETLQTGTSGKVQCM 1070 (1094)
Q Consensus 1008 iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~---------------dg~I~vwd~~t~~~~~~l~~~h~~~I~~l 1070 (1094)
+||+.+++.+..+.+...+.+++|+|+ ++++++. ||.|++||..+++.+..+. + ...+.++
T Consensus 329 v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~-~-~~~~~~~ 406 (433)
T 3bws_A 329 VYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE-A-GNQPTGL 406 (433)
T ss_dssp EEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE-C-SSSEEEE
T ss_pred EEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec-C-CCCCceE
Confidence 999999999999988889999999998 6777776 5799999999999998885 3 4579999
Q ss_pred EEcCCCCEEEEEeC-CCcEEEEeCC
Q 001349 1071 ALDDNEEFLVIGTS-DGRIQAWGLS 1094 (1094)
Q Consensus 1071 ~~Spdg~~L~sgs~-DG~I~iWdls 1094 (1094)
+|+|||++|++++. ||+|++|++.
T Consensus 407 ~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 407 DVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEcCCCCEEEEEECCCCeEEEEEec
Confidence 99999999998875 9999999974
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=6e-24 Score=246.44 Aligned_cols=260 Identities=10% Similarity=0.121 Sum_probs=206.8
Q ss_pred CcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EE-EEEECCCeEEEEecCCCcceeEEEecccCCCeE
Q 001349 785 MVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KI-FSGHSDGTIKVWTGRGSILHLIQQIREHTKAVT 859 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~L-aSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~ 859 (1094)
+..+++++.|+.|++||.. +....+..| ..+.+++|+|+ ++ ++++.|++|++||+.++ +.+..+..|. .+.
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~--~~~~~~~~~~-~v~ 77 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN--NVIATVPAGS-SPQ 77 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT--EEEEEEECSS-SEE
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEEeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCC--eEEEEEECCC-Ccc
Confidence 3467889999999999987 344455555 45899999997 44 77889999999999998 6777776555 899
Q ss_pred EEEEecCCCEEE-EEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCc
Q 001349 860 GLAILQSGEMLY-SGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYP 938 (1094)
Q Consensus 860 sv~fspdg~~La-Sgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v 938 (1094)
+++|+|+|++|+ +++.|++|++||+.+++.. ........+.++. |+|+|+.+
T Consensus 78 ~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~--~~~~~~~~~~~~~-------~s~dg~~l------------------ 130 (391)
T 1l0q_A 78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVA--GTVKTGKSPLGLA-------LSPDGKKL------------------ 130 (391)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEEE--EEEECSSSEEEEE-------ECTTSSEE------------------
T ss_pred ceEECCCCCEEEEEECCCCEEEEEECCCCeEE--EEEeCCCCcceEE-------ECCCCCEE------------------
Confidence 999999999875 4556799999999998532 2222334455555 77887752
Q ss_pred eEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEE-EEECCCCEEEEEECCCCeEE
Q 001349 939 KCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTA-STSLDGAAVKMWSTSNYNMV 1017 (1094)
Q Consensus 939 ~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~la-s~s~Dg~~I~iwd~~~~~~~ 1017 (1094)
+++++.|+.|++||+.+++.... +..+ ..+..++|++++.+++ +++.+ +.|++||+.+++..
T Consensus 131 ---------~~~~~~~~~v~~~d~~~~~~~~~------~~~~-~~~~~~~~~~dg~~l~~~~~~~-~~v~~~d~~~~~~~ 193 (391)
T 1l0q_A 131 ---------YVTNNGDKTVSVINTVTKAVINT------VSVG-RSPKGIAVTPDGTKVYVANFDS-MSISVIDTVTNSVI 193 (391)
T ss_dssp ---------EEEETTTTEEEEEETTTTEEEEE------EECC-SSEEEEEECTTSSEEEEEETTT-TEEEEEETTTTEEE
T ss_pred ---------EEEeCCCCEEEEEECCCCcEEEE------EecC-CCcceEEECCCCCEEEEEeCCC-CEEEEEECCCCeEE
Confidence 36777899999999999887643 2333 4679999999998774 55555 59999999999999
Q ss_pred EEecCCCCEEEEEEeCC--EEEEEE---cCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEE-EEEeCCCcEEEE
Q 001349 1018 GSLPTLSEVRAMVVSSE--LVYLGC---KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFL-VIGTSDGRIQAW 1091 (1094)
Q Consensus 1018 ~~~~~~~~v~~l~~spd--~l~sgs---~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L-~sgs~DG~I~iW 1091 (1094)
..+.+...+.+++|+|+ ++++++ .++.|++||+.+++.+..+. .|. .+.+++|+|||++| ++++.||.|++|
T Consensus 194 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~ 271 (391)
T 1l0q_A 194 DTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP-VGP-DPAGIAVTPDGKKVYVALSFXNTVSVI 271 (391)
T ss_dssp EEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE-CCS-SEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEe-cCC-CccEEEEccCCCEEEEEcCCCCEEEEE
Confidence 98888889999999998 677777 68999999999999988885 443 58999999999987 677889999999
Q ss_pred eCC
Q 001349 1092 GLS 1094 (1094)
Q Consensus 1092 dls 1094 (1094)
|+.
T Consensus 272 d~~ 274 (391)
T 1l0q_A 272 DTA 274 (391)
T ss_dssp ETT
T ss_pred ECC
Confidence 973
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-24 Score=258.55 Aligned_cols=235 Identities=11% Similarity=0.068 Sum_probs=187.6
Q ss_pred CCCcEEEEEEeCC--E-EEEEECCCeEEEEecC--CCcceeEEEec--ccCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 001349 812 ENGKVLSIACFRD--K-IFSGHSDGTIKVWTGR--GSILHLIQQIR--EHTKAVTGLAILQSGEMLYSGSLDKTARVWSI 884 (1094)
Q Consensus 812 h~~~V~~l~fspd--~-LaSgs~Dg~I~vWd~~--t~~~~~~~~l~--~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi 884 (1094)
|.+.|++++|+|+ + +++|+.||+|++||+. ++ ..+..+. .|...|++++|+|+|++|++|+.||.|++|++
T Consensus 101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~ 178 (450)
T 2vdu_B 101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK--NVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDI 178 (450)
T ss_dssp CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS--SCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC--ceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEec
Confidence 4557999999997 6 4899999999999998 77 5666665 67799999999999999999999999999999
Q ss_pred CCCceEE--E-EecccCccceeeeecCceEEEeeC---CCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEE
Q 001349 885 GNEEIHC--V-QVHDIKDQIQNLAVSNSILCFIPQ---GAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQ 958 (1094)
Q Consensus 885 ~~~~~~~--~-~~~~~~~~V~~v~~~~~~~~fspd---g~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~ 958 (1094)
.++.... . ....+...|.++. |+|+ ++ .+++|+.|+.|+
T Consensus 179 ~~~~~~~~~~~~~~~h~~~v~~~~-------~sp~~~~~~----------------------------~l~s~~~d~~i~ 223 (450)
T 2vdu_B 179 NSIPEEKFTQEPILGHVSMLTDVH-------LIKDSDGHQ----------------------------FIITSDRDEHIK 223 (450)
T ss_dssp TSCCCSSCCCCCSEECSSCEEEEE-------EEECTTSCE----------------------------EEEEEETTSCEE
T ss_pred CCcccccccceeeecccCceEEEE-------EcCCCCCCc----------------------------EEEEEcCCCcEE
Confidence 8764210 0 1123455566665 6666 44 488999999999
Q ss_pred EEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecC----------------
Q 001349 959 EIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT---------------- 1022 (1094)
Q Consensus 959 iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~---------------- 1022 (1094)
+||+.++..+.. .+.+|...|++++|+ ++.++++++.|+ +|++||+.+++++..+..
T Consensus 224 vwd~~~~~~~~~-----~~~~h~~~v~~~~~s-d~~~l~s~~~d~-~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (450)
T 2vdu_B 224 ISHYPQCFIVDK-----WLFGHKHFVSSICCG-KDYLLLSAGGDD-KIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPP 296 (450)
T ss_dssp EEEESCTTCEEE-----ECCCCSSCEEEEEEC-STTEEEEEESSS-EEEEEETTTCCEEEEEECHHHHGGGCCTTSBC--
T ss_pred EEECCCCceeee-----eecCCCCceEEEEEC-CCCEEEEEeCCC-eEEEEECCCCcEeeeecchhhhhhhhhhcccccc
Confidence 999999887632 245799999999999 999999999986 999999999998887752
Q ss_pred ----------CCCEEEEEEeCC--EEEEEE-cCCeEEEEEC--CCC---cEEEEecccCCcceEEEEEcCCCCEEEEE-e
Q 001349 1023 ----------LSEVRAMVVSSE--LVYLGC-KGGTVEIWDQ--KRQ---IRIETLQTGTSGKVQCMALDDNEEFLVIG-T 1083 (1094)
Q Consensus 1023 ----------~~~v~~l~~spd--~l~sgs-~dg~I~vwd~--~t~---~~~~~l~~~h~~~I~~l~~Spdg~~L~sg-s 1083 (1094)
...+..++|+|+ ++++++ .|+.|++||+ .++ +.+..+. +| +.|++++|+|++ ++++. +
T Consensus 297 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~-~~-~~v~~~~~~~~~-~~v~~~~ 373 (450)
T 2vdu_B 297 RFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIIT-FP-YNVISLSAHNDE-FQVTLDN 373 (450)
T ss_dssp --------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEE-CS-SCEEEEEEETTE-EEEEECC
T ss_pred cccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEec-cC-CceEEEEecCCc-EEEEEec
Confidence 246899999988 888888 8999999999 555 6677774 56 789999999965 44444 3
Q ss_pred C------CCcEEEEeC
Q 001349 1084 S------DGRIQAWGL 1093 (1094)
Q Consensus 1084 ~------DG~I~iWdl 1093 (1094)
. +..|.+|.+
T Consensus 374 ~~~~~~~~~~i~v~~~ 389 (450)
T 2vdu_B 374 KESSGVQKNFAKFIEY 389 (450)
T ss_dssp TTCCSSCCCSEEEEEE
T ss_pred ccCCCCCCcceEEEEE
Confidence 2 455888865
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-24 Score=241.04 Aligned_cols=265 Identities=14% Similarity=0.087 Sum_probs=194.1
Q ss_pred EEEEeeCCCCeEEEeCC-----cceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEecccCCCe
Q 001349 787 KVLSNGHDSSADFWNHR-----ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAV 858 (1094)
Q Consensus 787 ~l~s~s~dg~I~vWd~~-----~~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V 858 (1094)
.+++++ ..+|++|+.. +..+.+..|..+|..+.|.|| ++..+ -=+-|...|
T Consensus 56 ~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--------------------~~~~~~~~v 114 (356)
T 2w18_A 56 CIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVA--------------------LGNLEIREI 114 (356)
T ss_dssp EEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEE--------------------ECSSSEEEE
T ss_pred EEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeee--------------------eccccccce
Confidence 455555 4689999986 456788899999999999996 22221 112245678
Q ss_pred EEEEEecC----CCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC
Q 001349 859 TGLAILQS----GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS 934 (1094)
Q Consensus 859 ~sv~fspd----g~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~ 934 (1094)
++++|+|| ++++++++.+ +++|++.++++.......+...|..+. |+|+|+.+... ..+
T Consensus 115 ~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~d~~V~~~~-------~s~dG~~~~s~--------~~~ 177 (356)
T 2w18_A 115 RALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLSDQQVEVMT-------FAEDGGGKENQ--------FLM 177 (356)
T ss_dssp EEECC------CCEEEEEEEEE--EEEEEETTTEEEEEESSSTTCEEEEEE-------ECTTSCEEEEE--------EEC
T ss_pred EEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEecccCCCCcEEEEE-------ECCCCceeeee--------ccC
Confidence 89999999 8999998854 888999887544433445677888877 88888876532 234
Q ss_pred CCCceEEEEeC-----CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEE------------E
Q 001349 935 SKYPKCLALVQ-----GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYT------------A 997 (1094)
Q Consensus 935 ~~~v~~l~~s~-----~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~l------------a 997 (1094)
...+..++|++ ..+++|+.|++|++||+.+|+.+..+.++. .+...+.+++|+|++.++ +
T Consensus 178 ~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~---~~v~~v~~vafSpdG~~lvs~s~~~~~w~la 254 (356)
T 2w18_A 178 PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDD---SYQASVCHKAYSEMGLLFIVLSHPCAKESES 254 (356)
T ss_dssp CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC------CCCEEEEEEETTEEEEEEC---------
T ss_pred CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCC---cceeeeEEEEECCCCCEEEEeccCCCcceee
Confidence 55566666654 579999999999999999999885443211 122467888999999887 4
Q ss_pred EEECCCCEEEEEECCCCeEEEEec------CCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcceE-EE
Q 001349 998 STSLDGAAVKMWSTSNYNMVGSLP------TLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQ-CM 1070 (1094)
Q Consensus 998 s~s~Dg~~I~iwd~~~~~~~~~~~------~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~-~l 1070 (1094)
+++.|+ +|++||..+++.+..+. |...+.+..++...+++|+.|++|+|||+.+++++.++. +|...+. ++
T Consensus 255 SGs~D~-tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~-gH~~~vvs~v 332 (356)
T 2w18_A 255 LRSPVF-QLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLP-PVSDQHWSFV 332 (356)
T ss_dssp ---CCE-EEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEEC-CC--CCCCEE
T ss_pred ccCCCc-EEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEec-CCCCCeEEEE
Confidence 566664 99999999999877652 334466666666689999999999999999999999994 7776554 68
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1071 ALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1071 ~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
+|||||++|++|+.||+|+|||+.
T Consensus 333 afSPDG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 333 KWSGTDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp EECSSSSEEEEECTTSCEEEEEEC
T ss_pred EECCCCCEEEEEECCCcEEEecCC
Confidence 999999999999999999999964
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-24 Score=255.90 Aligned_cols=244 Identities=16% Similarity=0.193 Sum_probs=198.4
Q ss_pred ccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEec
Q 001349 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIR 852 (1094)
Q Consensus 775 ~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~ 852 (1094)
.+....|++++.++++|+.||+|++||+. .....+.+|...|.+++|++.++++|+.|+++++||..... ..+..+.
T Consensus 149 ~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~-~~~~~~~ 227 (420)
T 4gga_A 149 YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAE-HHVATLS 227 (420)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSS-CEEEEEE
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccc-eeeEEec
Confidence 44567788899999999999999999997 45677889999999999999999999999999999998754 5678889
Q ss_pred ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCce---EEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeE
Q 001349 853 EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEI---HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKT 929 (1094)
Q Consensus 853 ~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~---~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i 929 (1094)
+|...+..+.|+|+|.++++++.||.|++|+..+++. .......+...|.++. |+|++..++.
T Consensus 228 ~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~-------~~p~~~~~la------- 293 (420)
T 4gga_A 228 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA-------WCPWQSNVLA------- 293 (420)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEE-------ECTTCTTEEE-------
T ss_pred ccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeee-------eCCCcccEEE-------
Confidence 9999999999999999999999999999999988641 1122233455555555 5555543211
Q ss_pred EEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEE--CCCCEEE
Q 001349 930 KLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS--LDGAAVK 1007 (1094)
Q Consensus 930 ~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s--~Dg~~I~ 1007 (1094)
.++|+.|++|++||+.++..... +.. ...+.++.|++++..+++++ .|+ .|+
T Consensus 294 ------------------~~~gs~D~~I~iwd~~t~~~~~~------~~~-~~~v~~~~~~~~~~~lv~~sg~~d~-~I~ 347 (420)
T 4gga_A 294 ------------------TGGGTSDRHIRIWNVCSGACLSA------VDA-HSQVCSILWSPHYKELISGHGFAQN-QLV 347 (420)
T ss_dssp ------------------EEECTTTCEEEEEETTTTEEEEE------EEC-SSCEEEEEEETTTTEEEEEECTTTC-CEE
T ss_pred ------------------EEeecCCCEEEEEeCCcccccee------ecc-ccceeeeeecCCCCeEEEEEecCCC-EEE
Confidence 23456899999999999988743 222 35789999999888887765 454 999
Q ss_pred EEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEe
Q 001349 1008 MWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETL 1059 (1094)
Q Consensus 1008 iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l 1059 (1094)
|||+.+++++..+. |.+.|++++|+|| +|++|+.||+|+|||+....+....
T Consensus 348 iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~ 402 (420)
T 4gga_A 348 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRR 402 (420)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC---
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchh
Confidence 99999999999998 7889999999998 8999999999999999876655554
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6e-25 Score=256.65 Aligned_cols=238 Identities=18% Similarity=0.203 Sum_probs=189.4
Q ss_pred EEEEEEeCC---EEEEEECCCeEEEEecCCCcc--eeEEEecccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCce
Q 001349 816 VLSIACFRD---KIFSGHSDGTIKVWTGRGSIL--HLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEEI 889 (1094)
Q Consensus 816 V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~--~~~~~l~~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~ 889 (1094)
...++++|+ ++++|+.||.|+|||+.+... ..+..+.+|.+.|++++|+| ++++|++|+.||+|++||+.++..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 446889997 445688999999999865411 23456789999999999999 999999999999999999988631
Q ss_pred ------EEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECC
Q 001349 890 ------HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA 963 (1094)
Q Consensus 890 ------~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~ 963 (1094)
.......|...|.++. |+|++. ..+++|+.||.|++||+.
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~-------~~p~~~---------------------------~~l~s~~~dg~i~iwd~~ 162 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVA-------WHPTAQ---------------------------NVLLSAGCDNVILVWDVG 162 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEE-------ECSSBT---------------------------TEEEEEETTSCEEEEETT
T ss_pred ccccCCceEEecCCCCeEEEEE-------ECcCCC---------------------------CEEEEEcCCCEEEEEECC
Confidence 1112223444555554 555542 248899999999999999
Q ss_pred CCceeEEeccceee--cCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEe-c-CCCC-EEEEEEeCC--EE
Q 001349 964 TGTFATIQTGHRKL--LGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL-P-TLSE-VRAMVVSSE--LV 1036 (1094)
Q Consensus 964 ~~~~~~~~~~~~~~--~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~-~-~~~~-v~~l~~spd--~l 1036 (1094)
+++.. ..+ .+|...|++++|+|++.++++++.|| .|++||+++++.+..+ . |... +.++.|+|+ ++
T Consensus 163 ~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 235 (402)
T 2aq5_A 163 TGAAV------LTLGPDVHPDTIYSVDWSRDGALICTSCRDK-RVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKIL 235 (402)
T ss_dssp TTEEE------EEECTTTCCSCEEEEEECTTSSCEEEEETTS-EEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEE
T ss_pred CCCcc------EEEecCCCCCceEEEEECCCCCEEEEEecCC-cEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEE
Confidence 99876 445 67899999999999999999999997 9999999999999888 4 4444 899999998 77
Q ss_pred EEE---EcCCeEEEEECCCCcE-EEEecccCCcceEEEEEcCCCCEEEE-EeCCCcEEEEeCC
Q 001349 1037 YLG---CKGGTVEIWDQKRQIR-IETLQTGTSGKVQCMALDDNEEFLVI-GTSDGRIQAWGLS 1094 (1094)
Q Consensus 1037 ~sg---s~dg~I~vwd~~t~~~-~~~l~~~h~~~I~~l~~Spdg~~L~s-gs~DG~I~iWdls 1094 (1094)
++| +.|+.|++||+.+++. +......|...|.+++|+|++++|++ |+.||.|++||+.
T Consensus 236 ~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~ 298 (402)
T 2aq5_A 236 TTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEIT 298 (402)
T ss_dssp EEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEEC
T ss_pred EEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEec
Confidence 777 6899999999998664 33443357778999999999999964 5579999999973
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-24 Score=248.49 Aligned_cols=231 Identities=10% Similarity=0.095 Sum_probs=178.2
Q ss_pred cccccCcEEEEe-----------eCCCCeEEEeCCcc---e--------eecccCCCcEEEEEEeCC--EEE--EEECCC
Q 001349 780 PLAFEMVKVLSN-----------GHDSSADFWNHREL---V--------HVDSSENGKVLSIACFRD--KIF--SGHSDG 833 (1094)
Q Consensus 780 ~~~~d~~~l~s~-----------s~dg~I~vWd~~~~---~--------~~~~~h~~~V~~l~fspd--~La--Sgs~Dg 833 (1094)
.+.+++..+++| +.|+.+++|++... . .....+...+.+++|+|| +++ +|+.|+
T Consensus 78 s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~ 157 (365)
T 4h5i_A 78 AIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPA 157 (365)
T ss_dssp EEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSC
T ss_pred EEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCC
Confidence 455566666554 56788999987521 1 112234567999999997 544 556899
Q ss_pred eEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEE-EEecccCccceeeeecCceEE
Q 001349 834 TIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHC-VQVHDIKDQIQNLAVSNSILC 912 (1094)
Q Consensus 834 ~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~-~~~~~~~~~V~~v~~~~~~~~ 912 (1094)
+|+|||+.++ .++..+. |.+.|++++|+|||+++++++.|+ +++|+..++.... .....+...|.++.
T Consensus 158 ~i~iwd~~~~--~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~------- 226 (365)
T 4h5i_A 158 IMRIIDPSDL--TEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSLSKIN------- 226 (365)
T ss_dssp EEEEEETTTT--EEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEEEEEE-------
T ss_pred EEEEeECCCC--cEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCCCCCCEEEEE-------
Confidence 9999999998 6777774 888999999999999999998665 6666666665332 23334566777777
Q ss_pred EeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCC----eEEEEECCCCceeEEeccceeecCCCCCeEEEE
Q 001349 913 FIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDG----AIQEIDLATGTFATIQTGHRKLLGKANPVHALQ 988 (1094)
Q Consensus 913 fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg----~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~ 988 (1094)
|+|+|+. +++++.|+ .++.||+..+....... ..+.+|...|++++
T Consensus 227 fspdg~~----------------------------l~~~s~d~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~V~~~~ 276 (365)
T 4h5i_A 227 FIADDTV----------------------------LIAASLKKGKGIVLTKISIKSGNTSVLRS--KQVTNRFKGITSMD 276 (365)
T ss_dssp EEETTEE----------------------------EEEEEESSSCCEEEEEEEEETTEEEEEEE--EEEESSCSCEEEEE
T ss_pred EcCCCCE----------------------------EEEEecCCcceeEEeecccccceecceee--eeecCCCCCeEeEE
Confidence 8898876 44555554 57888887765432222 46778999999999
Q ss_pred EeCCccEEEEEECCCCEEEEEECCCCeEEEEec--CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCC
Q 001349 989 VHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP--TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKR 1052 (1094)
Q Consensus 989 fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~--~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t 1052 (1094)
|+|++.++++++.|+ +|+|||+.+++++.++. |...|++++|+|| +|++||.|++|+|||+..
T Consensus 277 ~Spdg~~lasgs~D~-~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 277 VDMKGELAVLASNDN-SIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp ECTTSCEEEEEETTS-CEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred ECCCCCceEEEcCCC-EEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 999999999999997 99999999999998864 7899999999999 899999999999999864
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-24 Score=247.36 Aligned_cols=258 Identities=14% Similarity=0.165 Sum_probs=204.5
Q ss_pred hhhcccccccccc---CcEEEEeeCCCCeEEEeCCc----ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCC
Q 001349 772 LRELRKYSPLAFE---MVKVLSNGHDSSADFWNHRE----LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG 842 (1094)
Q Consensus 772 ~~~~~~~~~~~~d---~~~l~s~s~dg~I~vWd~~~----~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t 842 (1094)
|...+....+.++ +.++++|+.||.|++||... ....+.+|.+.|++++|+|+ +|++|+.||+|++||+.+
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 117 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSS 117 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCC
Confidence 4445556677777 69999999999999999873 22567889999999999996 999999999999999999
Q ss_pred CcceeEEEecccCCCeEEEEE--ecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeE
Q 001349 843 SILHLIQQIREHTKAVTGLAI--LQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGI 920 (1094)
Q Consensus 843 ~~~~~~~~l~~H~~~V~sv~f--spdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l 920 (1094)
+ ..+. +.+|...|++++| +|++++|++++.||+|++||+.+++..... .....+.+ +.+.+..+
T Consensus 118 ~--~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~~~~---------~~~~~~~~ 183 (368)
T 3mmy_A 118 N--QAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVL--QLPERCYC---------ADVIYPMA 183 (368)
T ss_dssp T--EEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEE--ECSSCEEE---------EEEETTEE
T ss_pred C--Ccee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEE--ecCCCceE---------EEecCCee
Confidence 8 4444 5679999999999 889999999999999999999987532222 12223333 44455678
Q ss_pred EEEEeCCeEEEEcCCC--------------CceEEEEe--C----CEEEEEEcCCeEEEEECCCCc---eeEEeccceee
Q 001349 921 KVHLRNGKTKLLNSSK--------------YPKCLALV--Q----GKVYCGCQDGAIQEIDLATGT---FATIQTGHRKL 977 (1094)
Q Consensus 921 ~~~~~~g~i~l~~~~~--------------~v~~l~~s--~----~~l~sgs~Dg~I~iwDl~~~~---~~~~~~~~~~~ 977 (1094)
+++..++.+.+|+... .+.++.+. . ..+++|+.||.|++||+.... .. ..+
T Consensus 184 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~------~~~ 257 (368)
T 3mmy_A 184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDN------FTF 257 (368)
T ss_dssp EEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHS------EEE
T ss_pred EEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccc------eee
Confidence 8888888898888642 34444443 2 239999999999999999873 23 233
Q ss_pred cCCCC------------CeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcC
Q 001349 978 LGKAN------------PVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKG 1042 (1094)
Q Consensus 978 ~~h~~------------~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~d 1042 (1094)
.+|.. +|++++|+|++.++++++.|| .|++||+.+++++..+. |...|.+++|+|+ ++++|+.|
T Consensus 258 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d 336 (368)
T 3mmy_A 258 KCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDG-RFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSY 336 (368)
T ss_dssp ECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTS-CEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECC
T ss_pred eeeecccccccccccccceEEEEEecCCCEEEEEccCC-eEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecc
Confidence 34443 799999999999999999997 99999999999999988 6889999999998 89999988
Q ss_pred CeEEEEEC
Q 001349 1043 GTVEIWDQ 1050 (1094)
Q Consensus 1043 g~I~vwd~ 1050 (1094)
+..+.|++
T Consensus 337 ~~~~~~~~ 344 (368)
T 3mmy_A 337 DWSKGHEF 344 (368)
T ss_dssp CSTTCGGG
T ss_pred cccccccc
Confidence 75555443
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-24 Score=242.61 Aligned_cols=261 Identities=13% Similarity=0.136 Sum_probs=209.5
Q ss_pred hhccccccccccCcEEEEeeCCCCeEEEeCCc-c----eeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEec-CCC
Q 001349 773 RELRKYSPLAFEMVKVLSNGHDSSADFWNHRE-L----VHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTG-RGS 843 (1094)
Q Consensus 773 ~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~-~----~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~-~t~ 843 (1094)
...+....+.+++.++++++.||.|++|+... . .....+|.+.|++++|+|+ +|++|+.||.|++||+ .++
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 90 (342)
T 1yfq_A 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP 90 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC
Confidence 34455667788999999999999999999872 2 4556689999999999974 7999999999999999 887
Q ss_pred cceeEEEecc--cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC---------CceEEEEecccCccceeeeecCceEE
Q 001349 844 ILHLIQQIRE--HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGN---------EEIHCVQVHDIKDQIQNLAVSNSILC 912 (1094)
Q Consensus 844 ~~~~~~~l~~--H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~---------~~~~~~~~~~~~~~V~~v~~~~~~~~ 912 (1094)
....+.+ |...|++++|+| ++++++++.||+|++||+.+ ++ ......+...+.++.
T Consensus 91 ---~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~------- 157 (342)
T 1yfq_A 91 ---SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNL--NSNNTKVKNKIFTMD------- 157 (342)
T ss_dssp ---SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEES--CSSSSSSCCCEEEEE-------
T ss_pred ---ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCC--eeeEEeeCCceEEEE-------
Confidence 3477888 999999999999 99999999999999999876 42 222334667788877
Q ss_pred EeeCCCeEEEEEeCCeEEEEcCCC---------------CceEEEEeC---CEEEEEEcCCeEEEEECCCC------cee
Q 001349 913 FIPQGAGIKVHLRNGKTKLLNSSK---------------YPKCLALVQ---GKVYCGCQDGAIQEIDLATG------TFA 968 (1094)
Q Consensus 913 fspdg~~l~~~~~~g~i~l~~~~~---------------~v~~l~~s~---~~l~sgs~Dg~I~iwDl~~~------~~~ 968 (1094)
|+|++ ++++..++.+.+|+... .+.++.+++ ..+++|+.||.|++||+..+ ...
T Consensus 158 ~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~ 235 (342)
T 1yfq_A 158 TNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR 235 (342)
T ss_dssp ECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred ecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccc
Confidence 77766 88888899999998543 477888876 56999999999999999876 444
Q ss_pred EEecccee---ecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-C-CCCEEEEEEeCCEEEEEEcCC
Q 001349 969 TIQTGHRK---LLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-T-LSEVRAMVVSSELVYLGCKGG 1043 (1094)
Q Consensus 969 ~~~~~~~~---~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~-~~~v~~l~~spd~l~sgs~dg 1043 (1094)
..+..+.. -.+|...|++++|+|++.++++++.|| .|++||+.+++.+..+. | ...|.+++....++++|+.||
T Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~Dg 314 (342)
T 1yfq_A 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG-IISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDD 314 (342)
T ss_dssp EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTS-CEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECT
T ss_pred eeeecccccccccccceeEEEEEEcCCCCEEEEecCCc-eEEEEcCccHhHhhhhhcccCCCceEecCCCCeEEEEecCC
Confidence 32222111 012344999999999999999999987 99999999999999988 5 788999992223999999999
Q ss_pred e-EEEEE
Q 001349 1044 T-VEIWD 1049 (1094)
Q Consensus 1044 ~-I~vwd 1049 (1094)
+ .+.|.
T Consensus 315 ~~~~~~~ 321 (342)
T 1yfq_A 315 TFKTNAA 321 (342)
T ss_dssp HHHHCSS
T ss_pred ccccccc
Confidence 8 55554
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.7e-24 Score=251.93 Aligned_cols=202 Identities=12% Similarity=0.139 Sum_probs=166.9
Q ss_pred ccCCCeEEEEEecCCCEE-EEEeCCCcEEEEECC--CCc-eEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCe
Q 001349 853 EHTKAVTGLAILQSGEML-YSGSLDKTARVWSIG--NEE-IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 928 (1094)
Q Consensus 853 ~H~~~V~sv~fspdg~~L-aSgs~DgtI~vWdi~--~~~-~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~ 928 (1094)
+|.+.|++++|+|+|++| ++|+.||+|++||+. +++ ...+....+...|.++. |+|+|+.
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~-------~sp~~~~--------- 163 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAIS-------IAEDDTT--------- 163 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEE-------ECTTSSE---------
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEE-------EcCCCCE---------
Confidence 345579999999999996 899999999999998 664 33333334556677766 7777764
Q ss_pred EEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC---ccEEEEEECCCCE
Q 001349 929 TKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG---LVYTASTSLDGAA 1005 (1094)
Q Consensus 929 i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~---~~~las~s~Dg~~ 1005 (1094)
+++|+.||.|++||+.++..... ....+.+|...|++++|+|+ +.++++++.|+ +
T Consensus 164 -------------------l~~~~~~g~v~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~-~ 221 (450)
T 2vdu_B 164 -------------------VIIADKFGDVYSIDINSIPEEKF--TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDE-H 221 (450)
T ss_dssp -------------------EEEEETTSEEEEEETTSCCCSSC--CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTS-C
T ss_pred -------------------EEEEeCCCcEEEEecCCcccccc--cceeeecccCceEEEEEcCCCCCCcEEEEEcCCC-c
Confidence 78889999999999988765410 01256788999999999999 99999999996 9
Q ss_pred EEEEECCCCeEEEEec--CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEeccc-------------------
Q 001349 1006 VKMWSTSNYNMVGSLP--TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTG------------------- 1062 (1094)
Q Consensus 1006 I~iwd~~~~~~~~~~~--~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~------------------- 1062 (1094)
|++||+.++..+..+. |...|.+++|+ + ++++|+.|++|++||+.+++++..+..+
T Consensus 222 i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (450)
T 2vdu_B 222 IKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQN 300 (450)
T ss_dssp EEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC------
T ss_pred EEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccc
Confidence 9999999998887743 77899999998 6 9999999999999999999988888421
Q ss_pred -----CCcceEEEEEcCCCCEEEEEe-CCCcEEEEeC
Q 001349 1063 -----TSGKVQCMALDDNEEFLVIGT-SDGRIQAWGL 1093 (1094)
Q Consensus 1063 -----h~~~I~~l~~Spdg~~L~sgs-~DG~I~iWdl 1093 (1094)
+...|.+++|+|++++|++++ .|+.|++|++
T Consensus 301 ~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 301 ENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp ----CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred cccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 234699999999999999999 8999999997
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-24 Score=276.16 Aligned_cols=262 Identities=15% Similarity=0.174 Sum_probs=204.1
Q ss_pred HHHHhhhccccccccccCcEEEEeeCCCCeEEEeCC----cceeecccCCCcEEEEEEeC----CEEEEEECCCeEEEEe
Q 001349 768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFR----DKIFSGHSDGTIKVWT 839 (1094)
Q Consensus 768 ~~~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~----~~~~~~~~h~~~V~~l~fsp----d~LaSgs~Dg~I~vWd 839 (1094)
.+++|...+....+++++.++++|+.||+|++||.. .....+.+|.+.|++++|++ ++|++|+.||+|++||
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd 83 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence 345677777788888999999999999999999986 34567889999999999985 3999999999999999
Q ss_pred cCCCcceeEEEecccCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCc-eEEEEecccCccceeeeecCceEEEeeC
Q 001349 840 GRGSILHLIQQIREHTKAVTGLAILQS--GEMLYSGSLDKTARVWSIGNEE-IHCVQVHDIKDQIQNLAVSNSILCFIPQ 916 (1094)
Q Consensus 840 ~~t~~~~~~~~l~~H~~~V~sv~fspd--g~~LaSgs~DgtI~vWdi~~~~-~~~~~~~~~~~~V~~v~~~~~~~~fspd 916 (1094)
+.++....+..+.+|...|++++|+|+ ++++++|+.||+|++||+.++. ........+...|.++. |+|.
T Consensus 84 ~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~-------~~p~ 156 (753)
T 3jro_A 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS-------WAPA 156 (753)
T ss_dssp EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEE-------ECCC
T ss_pred CCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEE-------ecCc
Confidence 999855588889999999999999999 9999999999999999998873 22333345667777777 5553
Q ss_pred CCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC---c
Q 001349 917 GAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG---L 993 (1094)
Q Consensus 917 g~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~---~ 993 (1094)
..... +. ......+..+++|+.||.|++||++++....... ..+.+|...|++++|+|+ +
T Consensus 157 ~~~~~-----~~----------~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~--~~~~~h~~~V~~l~~sp~~~~~ 219 (753)
T 3jro_A 157 TIEED-----GE----------HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE--STLEGHSDWVRDVAWSPTVLLR 219 (753)
T ss_dssp C------------------------CGGGCCEEEEETTSCEEEEEEETTTTEEEEE--EEECCCSSCEEEEEECCCCSSS
T ss_pred ccccc-----cc----------cccCCCCCEEEEEECCCeEEEEeccCCcccceee--eeecCCCCcEEEEEeccCCCCC
Confidence 11000 00 0000012358999999999999998875432211 467789999999999999 8
Q ss_pred cEEEEEECCCCEEEEEECCCCeE-----EE-EecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCc
Q 001349 994 VYTASTSLDGAAVKMWSTSNYNM-----VG-SLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI 1054 (1094)
Q Consensus 994 ~~las~s~Dg~~I~iwd~~~~~~-----~~-~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~ 1054 (1094)
.++++++.|| .|++||+.++.. .. ...+...|++++|+|+ ++++|+.||.|++||+.++.
T Consensus 220 ~~l~s~s~Dg-~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 220 SYLASVSQDR-TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EEEEEEESSS-CEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred CEEEEEecCC-EEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 9999999997 999999988641 11 1126788999999998 89999999999999998643
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-23 Score=232.58 Aligned_cols=239 Identities=17% Similarity=0.206 Sum_probs=195.3
Q ss_pred ccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEec
Q 001349 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIR 852 (1094)
Q Consensus 775 ~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~ 852 (1094)
.+....+.+++.++++|+.||+|++|+.. +......+|...+.++.+.++.+++|+.++.+++|+..++. ..+..+.
T Consensus 69 ~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~-~~~~~~~ 147 (318)
T 4ggc_A 69 YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAE-HHVATLS 147 (318)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSS-CEEEEEE
T ss_pred eEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCc-eeEEEEc
Confidence 34556788899999999999999999998 45677889999999999999999999999999999988764 5677888
Q ss_pred ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCce---EEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeE
Q 001349 853 EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEI---HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKT 929 (1094)
Q Consensus 853 ~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~---~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i 929 (1094)
+|...+..+.|+++++++++++.||+|++||+.+++. .......+...|..+. ++|++..++
T Consensus 148 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~~~~-------- 212 (318)
T 4ggc_A 148 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA-------WCPWQSNVL-------- 212 (318)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEE-------ECTTSTTEE--------
T ss_pred CccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEE-------ecCCCCcEE--------
Confidence 9999999999999999999999999999999988641 1122223344455544 555444321
Q ss_pred EEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEE--CCCCEEE
Q 001349 930 KLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS--LDGAAVK 1007 (1094)
Q Consensus 930 ~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s--~Dg~~I~ 1007 (1094)
.+++++.++.|++||...+.... ...+...+..+.|++++..+++++ .|+ .|+
T Consensus 213 -----------------~~~~~~~~~~i~lwd~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~~~sg~~d~-~i~ 267 (318)
T 4ggc_A 213 -----------------ATGGGTSDRHIRIWNVCSGACLS-------AVDAHSQVCSILWSPHYKELISGHGFAQN-QLV 267 (318)
T ss_dssp -----------------EEEECTTTCEEEEEETTTCCEEE-------EEECSSCEEEEEEETTTTEEEEEECTTTC-CEE
T ss_pred -----------------EEEecCCCCEEEEEecccccccc-------cccceeeeeeeeecccccceEEEEEcCCC-EEE
Confidence 14567889999999999887653 234567899999999888777654 554 999
Q ss_pred EEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCc
Q 001349 1008 MWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI 1054 (1094)
Q Consensus 1008 iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~ 1054 (1094)
+||+.+++++.++. |.+.|++++|+|| +|++|+.||+|+|||+....
T Consensus 268 iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 268 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 99999999999998 7889999999998 89999999999999987643
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.2e-25 Score=259.74 Aligned_cols=266 Identities=12% Similarity=0.077 Sum_probs=207.4
Q ss_pred HhhhccccccccccCcEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeE
Q 001349 771 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLI 848 (1094)
Q Consensus 771 ~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~ 848 (1094)
+|........+.|+| .++++.+|+..........|...|++++|||+ +||+++.||+|++||..+ ++
T Consensus 50 gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~----~l 118 (588)
T 2j04_A 50 CNSKNLFHVKEFPLE-------FENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK----ML 118 (588)
T ss_dssp SBGGGTEEEEEECCC-------CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE----EE
T ss_pred CCCccEEEEEECCCC-------CcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc----ee
Confidence 344555556666666 56666667655333333367899999999997 999999999999999543 66
Q ss_pred EEecccCC-----CeEEEEEecCCCEEEEEeCCCcEEEEECCCCce--------EEEE--ecccCccceeeeecCceEEE
Q 001349 849 QQIREHTK-----AVTGLAILQSGEMLYSGSLDKTARVWSIGNEEI--------HCVQ--VHDIKDQIQNLAVSNSILCF 913 (1094)
Q Consensus 849 ~~l~~H~~-----~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~--------~~~~--~~~~~~~V~~v~~~~~~~~f 913 (1094)
..+. |.. .|.+++|||||++|++|+.||+|++||+.++.. ..+. ...|...|.+++ |
T Consensus 119 ~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVa-------w 190 (588)
T 2j04_A 119 TNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIV-------W 190 (588)
T ss_dssp EECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEE-------E
T ss_pred eecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEE-------E
Confidence 6677 766 499999999999999999999999999998752 2221 134567899998 9
Q ss_pred eeCCCeEEEEEeCCeEEEEcCC----------------CCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceee
Q 001349 914 IPQGAGIKVHLRNGKTKLLNSS----------------KYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKL 977 (1094)
Q Consensus 914 spdg~~l~~~~~~g~i~l~~~~----------------~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~ 977 (1094)
+||| +++++.|+.+++|+.. ..|.+++|+++.+++++ +++|++||+.++.... ..
T Consensus 191 SPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~~~~------~~ 261 (588)
T 2j04_A 191 YEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYSISS------LK 261 (588)
T ss_dssp ETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTEEEE------EE
T ss_pred cCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCeEEE------EE
Confidence 9999 7888889999988741 24777888866788886 7999999999887642 22
Q ss_pred cCCCCCeEEEEE--eCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcE
Q 001349 978 LGKANPVHALQV--HNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIR 1055 (1094)
Q Consensus 978 ~~h~~~V~sl~f--s~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~ 1055 (1094)
.+|...|..+.| +|++..+++++.|| + ++|... .++++||..++++.|+++++|+...+.
T Consensus 262 ~gh~~~V~~va~~~s~d~~~La~a~edG-~-klw~~d---------------~~~~spd~~l~a~~d~~v~lW~~~g~~- 323 (588)
T 2j04_A 262 TGSLENFHIIPLNHEKESTILLMSNKTS-Y-KVLLED---------------ELHVTADNIIAPYLEKKFKKWSTIWNE- 323 (588)
T ss_dssp CSCCSCCCEEEETTCSSCEEEEECSSCE-E-EEEESS---------------SEEEECCCSSHHHHHHHHHHTTTTTTS-
T ss_pred cCCCceEEEEEeeeCCCCCEEEEEcCCC-C-EEEeec---------------cEEECCCceEEEEcCCEEEEEECCCCc-
Confidence 379999999999 99999999998887 7 999987 255889865555569999999976554
Q ss_pred EEEecccCCcceEEEEEcCCCCEEEEEeC
Q 001349 1056 IETLQTGTSGKVQCMALDDNEEFLVIGTS 1084 (1094)
Q Consensus 1056 ~~~l~~~h~~~I~~l~~Spdg~~L~sgs~ 1084 (1094)
+..+ .+...|.+++|||||+.+|+++.
T Consensus 324 l~~~--~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 324 FNNY--ETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp SSSS--CCEEEEEEEEECTTSSEEEEEEE
T ss_pred eeee--ccceEEEEEEECCCCCEEEEEEe
Confidence 3344 23567999999999999998874
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-24 Score=244.47 Aligned_cols=219 Identities=12% Similarity=0.099 Sum_probs=169.6
Q ss_pred CEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC---------ceEEEEe
Q 001349 824 DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNE---------EIHCVQV 894 (1094)
Q Consensus 824 d~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~---------~~~~~~~ 894 (1094)
.++++|+.||+|++||+.++ +.+..+. .+.|.++.|+|+ +++++.|++|++|+.... +......
T Consensus 49 ~~l~sg~~Dg~v~iwd~~~~--~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~ 121 (343)
T 3lrv_A 49 WVCMCRCEDGALHFTQLKDS--KTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIE 121 (343)
T ss_dssp EEEEEEEETTEEEEEEESSS--SCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred CEEEEECCCCcEEEEECCCC--cEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEee
Confidence 38999999999999999998 5666665 567888999988 999999999999988752 1111111
Q ss_pred cccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC----CEEEEEEcCCeEEEEECCCCceeEE
Q 001349 895 HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ----GKVYCGCQDGAIQEIDLATGTFATI 970 (1094)
Q Consensus 895 ~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~----~~l~sgs~Dg~I~iwDl~~~~~~~~ 970 (1094)
..+ ...|.++.+++ ..+++|+.||+|++||+++++....
T Consensus 122 ~~~-------------------------------------~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~ 164 (343)
T 3lrv_A 122 VDS-------------------------------------ANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIV 164 (343)
T ss_dssp CCC-------------------------------------SSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEE
T ss_pred cCC-------------------------------------CCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEE
Confidence 112 23344444443 2588999999999999999987532
Q ss_pred eccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEE-EEec--CCCCEEEEEEeCC--EEEEEEcCCeE
Q 001349 971 QTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMV-GSLP--TLSEVRAMVVSSE--LVYLGCKGGTV 1045 (1094)
Q Consensus 971 ~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~-~~~~--~~~~v~~l~~spd--~l~sgs~dg~I 1045 (1094)
.. ..|...|++++|+|++.++++++.|| .|++||+++++.. ..+. |...|.+++|+|+ ++++++ ++.|
T Consensus 165 ~~-----~~~~~~i~~~~~~pdg~~lasg~~dg-~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v 237 (343)
T 3lrv_A 165 HS-----AKSDVEYSSGVLHKDSLLLALYSPDG-ILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTV 237 (343)
T ss_dssp EC-----CCSSCCCCEEEECTTSCEEEEECTTS-CEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBE
T ss_pred Ee-----cCCCCceEEEEECCCCCEEEEEcCCC-EEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeE
Confidence 21 23556799999999999999999997 9999999998877 6665 5789999999998 888888 5599
Q ss_pred EEEECCCCcEEEEecc--cCCcceE--EEEEcCCCCEEEEEeC-CCcEEEEeC
Q 001349 1046 EIWDQKRQIRIETLQT--GTSGKVQ--CMALDDNEEFLVIGTS-DGRIQAWGL 1093 (1094)
Q Consensus 1046 ~vwd~~t~~~~~~l~~--~h~~~I~--~l~~Spdg~~L~sgs~-DG~I~iWdl 1093 (1094)
++||+++++.+..+.. .|...+. +++|+|+|++|++++. |+.|++|++
T Consensus 238 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~ 290 (343)
T 3lrv_A 238 VCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKF 290 (343)
T ss_dssp EEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEE
Confidence 9999999876655421 1333343 6999999999999998 999999986
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.91 E-value=5e-23 Score=243.02 Aligned_cols=235 Identities=12% Similarity=0.144 Sum_probs=187.6
Q ss_pred ccccccc-CcEEEEeeCCCCeEEEeCCc------------ceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecC
Q 001349 778 YSPLAFE-MVKVLSNGHDSSADFWNHRE------------LVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGR 841 (1094)
Q Consensus 778 ~~~~~~d-~~~l~s~s~dg~I~vWd~~~------------~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~ 841 (1094)
...+.++ +..+++++.||.|++|++.. ....+.+|.+.|++++|+|+ +|++|+.||+|++||+.
T Consensus 133 ~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 212 (430)
T 2xyi_A 133 RARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN 212 (430)
T ss_dssp EEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETT
T ss_pred EEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCC
Confidence 3445554 67999999999999999863 34566789999999999985 99999999999999998
Q ss_pred CCc-----ceeEEEecccCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCc--eEEEEecccCccceeeeecCceEEE
Q 001349 842 GSI-----LHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVWSIGNEE--IHCVQVHDIKDQIQNLAVSNSILCF 913 (1094)
Q Consensus 842 t~~-----~~~~~~l~~H~~~V~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~--~~~~~~~~~~~~V~~v~~~~~~~~f 913 (1094)
++. ......+.+|...|++++|+| ++.+|++++.||+|++||++++. ........+...|.++. |
T Consensus 213 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~-------~ 285 (430)
T 2xyi_A 213 ATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLS-------F 285 (430)
T ss_dssp SCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEE-------E
T ss_pred CCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEE-------e
Confidence 731 122466779999999999999 78899999999999999999762 11112224455566665 6
Q ss_pred eeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCC-ceeEEeccceeecCCCCCeEEEEEeCC
Q 001349 914 IPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATG-TFATIQTGHRKLLGKANPVHALQVHNG 992 (1094)
Q Consensus 914 spdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~-~~~~~~~~~~~~~~h~~~V~sl~fs~~ 992 (1094)
+|++.. .+++|+.||.|++||+++. ..+ ..+.+|...|+++.|+|+
T Consensus 286 ~p~~~~---------------------------~l~tg~~dg~v~vwd~~~~~~~~------~~~~~h~~~v~~i~~sp~ 332 (430)
T 2xyi_A 286 NPYSEF---------------------------ILATGSADKTVALWDLRNLKLKL------HSFESHKDEIFQVQWSPH 332 (430)
T ss_dssp CSSCTT---------------------------EEEEEETTSEEEEEETTCTTSCS------EEEECCSSCEEEEEECSS
T ss_pred CCCCCC---------------------------EEEEEeCCCeEEEEeCCCCCCCe------EEeecCCCCEEEEEECCC
Confidence 666553 3789999999999999984 333 466778999999999998
Q ss_pred c-cEEEEEECCCCEEEEEECCC--------------CeEEEEec-CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCC
Q 001349 993 L-VYTASTSLDGAAVKMWSTSN--------------YNMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQ 1053 (1094)
Q Consensus 993 ~-~~las~s~Dg~~I~iwd~~~--------------~~~~~~~~-~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~ 1053 (1094)
+ .++++++.|| .|++||+.. ...+..+. |...|.+++|+|+ ++++++.||.|+||++...
T Consensus 333 ~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 333 NETILASSGTDR-RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CTTEEEEEETTS-CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCCEEEEEeCCC-cEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 8 4688888886 999999986 24555555 6678999999998 7999999999999998753
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.91 E-value=7.1e-23 Score=235.32 Aligned_cols=232 Identities=9% Similarity=0.062 Sum_probs=167.9
Q ss_pred EEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeC
Q 001349 837 VWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQ 916 (1094)
Q Consensus 837 vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspd 916 (1094)
+|++.+. ..+.+...|.+.|++++|+|||++|++|+.|| +++||+.+++....... . .+..+. +.++
T Consensus 3 i~s~~~~--~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~-~~~~~~-------~~~~ 69 (355)
T 3vu4_A 3 LGSMITR--NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--R-HLSKVR-------MLHR 69 (355)
T ss_dssp ------------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--S-CCCEEE-------ECTT
T ss_pred ccccccc--CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--C-CeEEEE-------EcCC
Confidence 5666666 56777889999999999999999999998876 78999988643222221 1 344444 7777
Q ss_pred CCeEE-EEEeCCeEEEEcC-----------CCCceEEEEeCCEEEEEEcCCeEEEEECCCC-ceeEEeccceeecCCCCC
Q 001349 917 GAGIK-VHLRNGKTKLLNS-----------SKYPKCLALVQGKVYCGCQDGAIQEIDLATG-TFATIQTGHRKLLGKANP 983 (1094)
Q Consensus 917 g~~l~-~~~~~g~i~l~~~-----------~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~-~~~~~~~~~~~~~~h~~~ 983 (1094)
++.++ ++..++.+++|+. ...|.++.++++.++++ .|+.|++||+.++ +.+.. +.. +
T Consensus 70 ~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~-~~~~i~i~d~~~~~~~~~~------~~~---~ 139 (355)
T 3vu4_A 70 TNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVS-YGDVISVFKFGNPWKRITD------DIR---F 139 (355)
T ss_dssp SSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEE-ETTEEEEEESSTTCCBSSC------CEE---E
T ss_pred CCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEE-EcCEEEEEECCCCceeeEE------ecc---C
Confidence 77774 4556689999985 34688888888877665 4889999999988 54422 211 3
Q ss_pred eEEEEEeCCccEEEE--EECCCCEEEEEECCCCe---------------E-EEEec-CCCCEEEEEEeCC--EEEEEEcC
Q 001349 984 VHALQVHNGLVYTAS--TSLDGAAVKMWSTSNYN---------------M-VGSLP-TLSEVRAMVVSSE--LVYLGCKG 1042 (1094)
Q Consensus 984 V~sl~fs~~~~~las--~s~Dg~~I~iwd~~~~~---------------~-~~~~~-~~~~v~~l~~spd--~l~sgs~d 1042 (1094)
...+++++ .+++. ++.|| .|++||+.++. + +..+. |...|.+++|+|+ ++++|+.|
T Consensus 140 ~~~~~~s~--~~la~~sg~~~g-~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d 216 (355)
T 3vu4_A 140 GGVCEFSN--GLLVYSNEFNLG-QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQD 216 (355)
T ss_dssp EEEEEEET--TEEEEEESSCTT-CEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CceEEEEc--cEEEEeCCCcCc-EEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCC
Confidence 44556667 34444 45665 99999999865 1 45555 7889999999998 89999999
Q ss_pred Ce-EEEEECCCCcEEEEeccc-CCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1043 GT-VEIWDQKRQIRIETLQTG-TSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1043 g~-I~vwd~~t~~~~~~l~~~-h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
|+ |++||+.+++++..+..+ |.+.|++++|+|||++|++++.||+|++||+.
T Consensus 217 ~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~ 270 (355)
T 3vu4_A 217 GTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIF 270 (355)
T ss_dssp CSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred CCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence 98 999999999999999645 99999999999999999999999999999973
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-23 Score=241.86 Aligned_cols=254 Identities=9% Similarity=0.009 Sum_probs=169.1
Q ss_pred ccccccCcEEEEeeCCCCeEEEeCCc-------ceeecccCCCcEEEEEEeC--------C--EEEEEECCCeEEEEecC
Q 001349 779 SPLAFEMVKVLSNGHDSSADFWNHRE-------LVHVDSSENGKVLSIACFR--------D--KIFSGHSDGTIKVWTGR 841 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~dg~I~vWd~~~-------~~~~~~~h~~~V~~l~fsp--------d--~LaSgs~Dg~I~vWd~~ 841 (1094)
..+.+++..+++++.|++|++||... ....+.+|.+.|.+++|+| | +|+||+.|++|+|||+.
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~ 174 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT 174 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC
Confidence 34566788999999999999999862 2345789999999999986 3 99999999999999998
Q ss_pred CCcceeEEEecccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeE
Q 001349 842 GSILHLIQQIREHTKAVTGLAILQSG-EMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGI 920 (1094)
Q Consensus 842 t~~~~~~~~l~~H~~~V~sv~fspdg-~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l 920 (1094)
++ .++..+.+|...|.+++|+|++ .+|++|+.||+|++||+.+++...... .+........ ++++....
T Consensus 175 ~~--~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~-~~~~~~~~~~-------~s~~~~~~ 244 (393)
T 4gq1_A 175 DE--GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENS-QTELVKNPWL-------LTLNTLPL 244 (393)
T ss_dssp TT--EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-----------CSCCCS-------EEEESGGG
T ss_pred CC--ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccccccc-ccCCcccceE-------Eecccccc
Confidence 87 6777788899999999999986 589999999999999999875221111 1111111111 11111100
Q ss_pred EEEEeCCeEEEEcCCCCceEEEEe---CCEEEEEEcCCeEEEEECCCCceeEEeccc-------------eeecCCCCCe
Q 001349 921 KVHLRNGKTKLLNSSKYPKCLALV---QGKVYCGCQDGAIQEIDLATGTFATIQTGH-------------RKLLGKANPV 984 (1094)
Q Consensus 921 ~~~~~~g~i~l~~~~~~v~~l~~s---~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~-------------~~~~~h~~~V 984 (1094)
. .......+...+.++.+. +..+++++.|+++++||+.++.....+..+ .....+...+
T Consensus 245 ~-----~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (393)
T 4gq1_A 245 V-----NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLL 319 (393)
T ss_dssp C-----------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSS
T ss_pred e-----eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcce
Confidence 0 001112355678888876 256999999999999999887654322111 0111122222
Q ss_pred EEEEEe--CCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEEC
Q 001349 985 HALQVH--NGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQ 1050 (1094)
Q Consensus 985 ~sl~fs--~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~ 1050 (1094)
...|+ .++.++++++.|| +|++||+.++.....+. |...|.+++|+|| +|++++.+| +.+|.+
T Consensus 320 -~~~~~~~~~~~~~~sgs~Dg-~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 320 -GACPHPRYMDYFATAHSQHG-LIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp -CCEECSSCTTEEEEEETTTT-EEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred -eEEEccCCCCEEEEEECCCC-EEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 22333 2556777777776 99999999988766655 7889999999999 899998776 555543
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.6e-22 Score=233.91 Aligned_cols=257 Identities=11% Similarity=0.103 Sum_probs=200.2
Q ss_pred EeeCCCCeEEEeCCc------ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEE-----EecccCC
Q 001349 790 SNGHDSSADFWNHRE------LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQ-----QIREHTK 856 (1094)
Q Consensus 790 s~s~dg~I~vWd~~~------~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~-----~l~~H~~ 856 (1094)
+++.++.+.+|.+.. ....+.. ...+.+++|+|+ ++++++.|++|++||+.++ +.+. .+.+|.+
T Consensus 94 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~~ 170 (433)
T 3bws_A 94 RKPEELNEKLIALDKEGITHRFISRFKT-GFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSG--QTVRLSPPEKYKKKLG 170 (433)
T ss_dssp SSGGGGTTCEEECCBTTCSEEEEEEEEC-SSCBCCCEESSSSEEEEEBTTSSSEEEEETTTC--CEEEECCCHHHHTTCC
T ss_pred cccCCCceEEEEECCCCCcceEEEEEcC-CCCceEEEEeCCCeEEEEeCCCCeEEEEECCCC--eEeeecCcccccccCC
Confidence 455666566665531 2222333 345669999986 7777888999999999988 4555 4558999
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCC
Q 001349 857 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSK 936 (1094)
Q Consensus 857 ~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~ 936 (1094)
.|++++|++++.++++++.|++|++||+.+++.... ...+...+.++. |+|+|+.+
T Consensus 171 ~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~-~~~~~~~~~~~~-------~~~~~~~l---------------- 226 (433)
T 3bws_A 171 FVETISIPEHNELWVSQMQANAVHVFDLKTLAYKAT-VDLTGKWSKILL-------YDPIRDLV---------------- 226 (433)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEE-EECSSSSEEEEE-------EETTTTEE----------------
T ss_pred ceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEE-EcCCCCCeeEEE-------EcCCCCEE----------------
Confidence 999999999999999999999999999998753222 223455566665 77777752
Q ss_pred CceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEEC--------CCCEEEE
Q 001349 937 YPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSL--------DGAAVKM 1008 (1094)
Q Consensus 937 ~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~--------Dg~~I~i 1008 (1094)
+++++.|+.|++||+.+++....+ .. ...+.+++|+|++.++++++. |+ .|++
T Consensus 227 -----------~~~~~~~~~i~~~d~~~~~~~~~~------~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg-~i~~ 287 (433)
T 3bws_A 227 -----------YCSNWISEDISVIDRKTKLEIRKT------DK-IGLPRGLLLSKDGKELYIAQFSASNQESGGG-RLGI 287 (433)
T ss_dssp -----------EEEETTTTEEEEEETTTTEEEEEC------CC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCE-EEEE
T ss_pred -----------EEEecCCCcEEEEECCCCcEEEEe------cC-CCCceEEEEcCCCCEEEEEECCCCccccCCC-eEEE
Confidence 345557999999999998876332 22 345899999999988888773 54 9999
Q ss_pred EECCCCeEEEEecCCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeC-
Q 001349 1009 WSTSNYNMVGSLPTLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTS- 1084 (1094)
Q Consensus 1009 wd~~~~~~~~~~~~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~- 1084 (1094)
||+.+++.+..+.+...+.+++|+|+ .+++++.++.|++||+.+++.+..+. +...+.+++|+|+|+++++++.
T Consensus 288 ~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~ 365 (433)
T 3bws_A 288 YSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP--VFDKPNTIALSPDGKYLYVSCRG 365 (433)
T ss_dssp EETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEECC
T ss_pred EECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec--CCCCCCeEEEcCCCCEEEEEecC
Confidence 99999998888877778999999998 45666899999999999999888884 6678999999999999988876
Q ss_pred --------------CCcEEEEeCC
Q 001349 1085 --------------DGRIQAWGLS 1094 (1094)
Q Consensus 1085 --------------DG~I~iWdls 1094 (1094)
||.|++||+.
T Consensus 366 ~~~~~~~~~~~g~~dg~v~~~d~~ 389 (433)
T 3bws_A 366 PNHPTEGYLKKGLVLGKVYVIDTT 389 (433)
T ss_dssp CCCTTTCTTSCCSSCCEEEEEETT
T ss_pred CCccccccccccccceEEEEEECC
Confidence 5799999973
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.89 E-value=6e-21 Score=221.15 Aligned_cols=267 Identities=15% Similarity=0.179 Sum_probs=200.6
Q ss_pred cccccccCcEE-EEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EE-EEEECCCeEEEEecCCCcceeEEEe
Q 001349 778 YSPLAFEMVKV-LSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KI-FSGHSDGTIKVWTGRGSILHLIQQI 851 (1094)
Q Consensus 778 ~~~~~~d~~~l-~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~L-aSgs~Dg~I~vWd~~t~~~~~~~~l 851 (1094)
...+.+++.++ ++++.|+.|++||.. +....+..| ..+.+++|+|+ ++ ++++.|+.|++||+.++ +.+..+
T Consensus 36 ~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~--~~~~~~ 112 (391)
T 1l0q_A 36 GAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN--TVAGTV 112 (391)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT--EEEEEE
T ss_pred eEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC-CCccceEECCCCCEEEEEECCCCEEEEEECCCC--eEEEEE
Confidence 45677788876 677799999999986 333444444 49999999996 55 55667799999999998 666666
Q ss_pred cccCCCeEEEEEecCCCEE-EEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEE
Q 001349 852 REHTKAVTGLAILQSGEML-YSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK 930 (1094)
Q Consensus 852 ~~H~~~V~sv~fspdg~~L-aSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~ 930 (1094)
.. ...+.+++|+|+|+++ ++++.|++|++||+.+++.. ........+..+. |+|+|+.+
T Consensus 113 ~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~--~~~~~~~~~~~~~-------~~~dg~~l---------- 172 (391)
T 1l0q_A 113 KT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI--NTVSVGRSPKGIA-------VTPDGTKV---------- 172 (391)
T ss_dssp EC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE--EEEECCSSEEEEE-------ECTTSSEE----------
T ss_pred eC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE--EEEecCCCcceEE-------ECCCCCEE----------
Confidence 54 4578999999999977 78888999999999987532 2222233445544 78887752
Q ss_pred EEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEE---CCCCEEE
Q 001349 931 LLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS---LDGAAVK 1007 (1094)
Q Consensus 931 l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s---~Dg~~I~ 1007 (1094)
+++++.|+.|++||+.+++..... .+...+.+++|++++.++++++ .++ .|+
T Consensus 173 -----------------~~~~~~~~~v~~~d~~~~~~~~~~-------~~~~~~~~~~~~~~g~~l~~~~~~~~~~-~v~ 227 (391)
T 1l0q_A 173 -----------------YVANFDSMSISVIDTVTNSVIDTV-------KVEAAPSGIAVNPEGTKAYVTNVDKYFN-TVS 227 (391)
T ss_dssp -----------------EEEETTTTEEEEEETTTTEEEEEE-------ECSSEEEEEEECTTSSEEEEEEECSSCC-EEE
T ss_pred -----------------EEEeCCCCEEEEEECCCCeEEEEE-------ecCCCccceEECCCCCEEEEEecCcCCC-cEE
Confidence 356778899999999998776332 2345789999999998888877 454 999
Q ss_pred EEECCCCeEEEEecCCCCEEEEEEeCC--EE-EEEEcCCeEEEEECCCCcEEEEecccCCcceE---EEE----------
Q 001349 1008 MWSTSNYNMVGSLPTLSEVRAMVVSSE--LV-YLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQ---CMA---------- 1071 (1094)
Q Consensus 1008 iwd~~~~~~~~~~~~~~~v~~l~~spd--~l-~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~---~l~---------- 1071 (1094)
+||+.+++.+..+..+..+.+++|+|+ ++ ++++.|+.|++||+.+++.+..+. .|..+.. .+.
T Consensus 228 ~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 306 (391)
T 1l0q_A 228 MIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMA-VGKNPYASGQFIGSIPVQPVYPS 306 (391)
T ss_dssp EEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEECCSSCEEECSSCCCCCB
T ss_pred EEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE-CCcCCCccceeeecccccccccc
Confidence 999999999999887778999999998 55 566889999999999999888874 3433211 122
Q ss_pred --EcCCC----------CEEEEEeCCCcEEEEeC
Q 001349 1072 --LDDNE----------EFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1072 --~Spdg----------~~L~sgs~DG~I~iWdl 1093 (1094)
|+.+. -.+...+.|.++++|++
T Consensus 307 a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~ 340 (391)
T 1l0q_A 307 ADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDF 340 (391)
T ss_dssp CCEEESCCSSEEETTCCEEEEECCBSCSEEEEEC
T ss_pred cccccccccccccccceEEEEeCCCCceEEEEEC
Confidence 22221 23556667889999997
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-21 Score=226.18 Aligned_cols=265 Identities=13% Similarity=0.064 Sum_probs=201.0
Q ss_pred ccccCc-EEEEee----CCC----CeEEEeC--Cc--ce--eecccCCCcEEEEEEe----------------CCEEEEE
Q 001349 781 LAFEMV-KVLSNG----HDS----SADFWNH--RE--LV--HVDSSENGKVLSIACF----------------RDKIFSG 829 (1094)
Q Consensus 781 ~~~d~~-~l~s~s----~dg----~I~vWd~--~~--~~--~~~~~h~~~V~~l~fs----------------pd~LaSg 829 (1094)
+...+. .+++|+ .+| .|++||. .+ .+ ..+.+|...+..++++ ...++.+
T Consensus 70 w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~ 149 (415)
T 2hqs_A 70 WSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYV 149 (415)
T ss_dssp HHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEE
T ss_pred HHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEE
Confidence 334444 566776 457 8999999 53 22 3467888888777766 3466666
Q ss_pred ECC------CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCC---cEEEEECCCCceEEEEecccCcc
Q 001349 830 HSD------GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDK---TARVWSIGNEEIHCVQVHDIKDQ 900 (1094)
Q Consensus 830 s~D------g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~Dg---tI~vWdi~~~~~~~~~~~~~~~~ 900 (1094)
+.+ ++|++||+.++ ....+.+|...|.+++|+|||++|++++.|+ +|++||+.+++... ...+...
T Consensus 150 s~~~~~~~~~~i~i~d~~g~---~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~--l~~~~~~ 224 (415)
T 2hqs_A 150 VQTNGGQFPYELRVSDYDGY---NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--VASFPRH 224 (415)
T ss_dssp EECSSSSCCEEEEEEETTSC---SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE--EECCSSC
T ss_pred EecCCCCccceEEEEcCCCC---CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE--eecCCCc
Confidence 554 79999999865 4567778999999999999999999999885 99999999986543 3334556
Q ss_pred ceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCC--eEEEEECCCCceeEEeccceeec
Q 001349 901 IQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDG--AIQEIDLATGTFATIQTGHRKLL 978 (1094)
Q Consensus 901 V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg--~I~iwDl~~~~~~~~~~~~~~~~ 978 (1094)
+.++. |+|||+.++ ++++.|+ .|++||+.+++.. .+.
T Consensus 225 ~~~~~-------~spdg~~la---------------------------~~~~~~g~~~i~~~d~~~~~~~-------~l~ 263 (415)
T 2hqs_A 225 NGAPA-------FSPDGSKLA---------------------------FALSKTGSLNLYVMDLASGQIR-------QVT 263 (415)
T ss_dssp EEEEE-------ECTTSSEEE---------------------------EEECTTSSCEEEEEETTTCCEE-------ECC
T ss_pred ccCEE-------EcCCCCEEE---------------------------EEEecCCCceEEEEECCCCCEE-------eCc
Confidence 66666 999998643 2444444 4999999988753 455
Q ss_pred CCCCCeEEEEEeCCccEEEEEECCCC--EEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcC---CeEEEEECC
Q 001349 979 GKANPVHALQVHNGLVYTASTSLDGA--AVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKG---GTVEIWDQK 1051 (1094)
Q Consensus 979 ~h~~~V~sl~fs~~~~~las~s~Dg~--~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~d---g~I~vwd~~ 1051 (1094)
.|...+.++.|+|++.+++.++.+++ .|.+||+.+++......+...+..++|+|| ++++++.+ +.|++||+.
T Consensus 264 ~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~ 343 (415)
T 2hqs_A 264 DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA 343 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT
T ss_pred CCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECC
Confidence 67788999999999998888876433 688889988775443346678889999998 67776653 589999999
Q ss_pred CCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCC---cEEEEeCC
Q 001349 1052 RQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDG---RIQAWGLS 1094 (1094)
Q Consensus 1052 t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG---~I~iWdls 1094 (1094)
+++.. .+ ..|. .+.+++|+|||++|++++.++ .|++||+.
T Consensus 344 ~~~~~-~l-~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 344 TGGVQ-VL-SSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp TCCEE-EC-CCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred CCCEE-Ee-cCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence 98874 45 3444 899999999999999988877 79999863
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-20 Score=226.02 Aligned_cols=299 Identities=10% Similarity=0.054 Sum_probs=222.2
Q ss_pred ccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEec--CCCcceeEEEeccc
Q 001349 781 LAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTG--RGSILHLIQQIREH 854 (1094)
Q Consensus 781 ~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~--~t~~~~~~~~l~~H 854 (1094)
+.+++..+++++.|++|.+||.. +....+..+.. +.+++|+|| ++++++.|++|++||+ .++ +.+.++. +
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~--~~~~~i~-~ 220 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEP--TKVAEIK-I 220 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSC--EEEEEEE-C
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCC--cEEEEEe-c
Confidence 55678889999999999999987 34555553333 899999997 9999999999999999 777 6778876 5
Q ss_pred CCCeEEEEEec----CCCEEEEEeC-CCcEEEEECCCCceE-EEEecc--------c-CccceeeeecCceEEEeeCCCe
Q 001349 855 TKAVTGLAILQ----SGEMLYSGSL-DKTARVWSIGNEEIH-CVQVHD--------I-KDQIQNLAVSNSILCFIPQGAG 919 (1094)
Q Consensus 855 ~~~V~sv~fsp----dg~~LaSgs~-DgtI~vWdi~~~~~~-~~~~~~--------~-~~~V~~v~~~~~~~~fspdg~~ 919 (1094)
...+..++|+| ||+++++++. +++|.+||..+++.. .+.... + ...+..+. ++|++..
T Consensus 221 g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~-------~s~~~~~ 293 (543)
T 1nir_A 221 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAII-------ASHEHPE 293 (543)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEE-------ECSSSSE
T ss_pred CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEE-------ECCCCCE
Confidence 56789999999 9999999985 899999999987632 222211 1 11344444 8887776
Q ss_pred EEEE-EeCCeEEEEcCC-------------CCceEEEEeC-C-EEEEE-EcCCeEEEEECCCCceeEEeccceeecCCCC
Q 001349 920 IKVH-LRNGKTKLLNSS-------------KYPKCLALVQ-G-KVYCG-CQDGAIQEIDLATGTFATIQTGHRKLLGKAN 982 (1094)
Q Consensus 920 l~~~-~~~g~i~l~~~~-------------~~v~~l~~s~-~-~l~sg-s~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~ 982 (1094)
+++. ..++.+.+|+.. ..+..+.|++ + +++++ ..+++|.+||..+++....+... ...|..
T Consensus 294 ~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g--~~ph~g 371 (543)
T 1nir_A 294 FIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG--KTPHPG 371 (543)
T ss_dssp EEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS--SSBCCT
T ss_pred EEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccC--CCCCCC
Confidence 5544 445788888753 3455677875 3 45554 46899999999999887544311 123544
Q ss_pred CeEEEEEeCC-ccEEEEEECCCCEEEEEECCC-------CeEEEEec-CCCCEEEEEEeCC--EEEEEE-------cCCe
Q 001349 983 PVHALQVHNG-LVYTASTSLDGAAVKMWSTSN-------YNMVGSLP-TLSEVRAMVVSSE--LVYLGC-------KGGT 1044 (1094)
Q Consensus 983 ~V~sl~fs~~-~~~las~s~Dg~~I~iwd~~~-------~~~~~~~~-~~~~v~~l~~spd--~l~sgs-------~dg~ 1044 (1094)
....+ ++|+ +.++++++.++++|.+||+.+ +++++++. +...+..+.++|| ++++++ .+++
T Consensus 372 ~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~ 450 (543)
T 1nir_A 372 RGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS 450 (543)
T ss_dssp TCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTC
T ss_pred CCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCce
Confidence 43333 4666 777777764334999999998 89999998 5567788999999 788876 2779
Q ss_pred EEEEECCCCcEE-EEec-------ccCCcceEEEEEcCCCCEEEEEe-----CCCcEEEEeC
Q 001349 1045 VEIWDQKRQIRI-ETLQ-------TGTSGKVQCMALDDNEEFLVIGT-----SDGRIQAWGL 1093 (1094)
Q Consensus 1045 I~vwd~~t~~~~-~~l~-------~~h~~~I~~l~~Spdg~~L~sgs-----~DG~I~iWdl 1093 (1094)
|.|||+.+++.. ..+. ..+...+..+.|+|||+.++++. .|+.|.|||.
T Consensus 451 v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 451 VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD 512 (543)
T ss_dssp EEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEET
T ss_pred EEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEEC
Confidence 999999999877 4442 24567899999999999988763 4799999996
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-20 Score=209.54 Aligned_cols=224 Identities=13% Similarity=0.076 Sum_probs=154.0
Q ss_pred cccccccc----CcEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCCEEEEEE---CCCeEEEEecC-CCcceeE
Q 001349 777 KYSPLAFE----MVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGH---SDGTIKVWTGR-GSILHLI 848 (1094)
Q Consensus 777 ~~~~~~~d----~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd~LaSgs---~Dg~I~vWd~~-t~~~~~~ 848 (1094)
+...+++| +.++++++.+ +++|++ ....+++++ .|++|++|++. ++ +.+
T Consensus 115 ~sla~spd~~~~~~~l~s~g~~--~~v~~l-------------------~~g~lv~ss~~g~d~~V~~~~~s~dG--~~~ 171 (356)
T 2w18_A 115 RALFCSSDDESEKQVLLKSGNI--KAVLGL-------------------TKRRLVSSSGTLSDQQVEVMTFAEDG--GGK 171 (356)
T ss_dssp EEECC------CCEEEEEEEEE--EEEEEE-------------------TTTEEEEEESSSTTCEEEEEEECTTS--CEE
T ss_pred EEEEECCCccccccEEEeCCCe--EEEEec-------------------CCCcEEEecccCCCCcEEEEEECCCC--cee
Confidence 34555666 6667766643 555643 122444444 49999999994 46 677
Q ss_pred EEecccCCCeEEEEEec---CCCEEEEEeCCCcEEEEECCCCce-EEEEecc-cCccceeeeecCceEEEeeCCCeEEEE
Q 001349 849 QQIREHTKAVTGLAILQ---SGEMLYSGSLDKTARVWSIGNEEI-HCVQVHD-IKDQIQNLAVSNSILCFIPQGAGIKVH 923 (1094)
Q Consensus 849 ~~l~~H~~~V~sv~fsp---dg~~LaSgs~DgtI~vWdi~~~~~-~~~~~~~-~~~~V~~v~~~~~~~~fspdg~~l~~~ 923 (1094)
..+.+|...+..++|++ ++.+|+|||.|++|+|||+.+|+. +.+..+. +...+.+++ |+|+|..+++.
T Consensus 172 ~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~va-------fSpdG~~lvs~ 244 (356)
T 2w18_A 172 ENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKA-------YSEMGLLFIVL 244 (356)
T ss_dssp EEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEE-------EEETTEEEEEE
T ss_pred eeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEE-------ECCCCCEEEEe
Confidence 88889999999999999 789999999999999999999963 3332111 122344444 99999887766
Q ss_pred EeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC
Q 001349 924 LRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG 1003 (1094)
Q Consensus 924 ~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg 1003 (1094)
..+.. .| .+++|+.|++|++||..+++.+..+.... ..+|...+.+..+ ++.++++++.|+
T Consensus 245 s~~~~--~w--------------~laSGs~D~tIklWd~~tgk~l~v~~~~~-p~Gh~~~~lsg~~--sg~~lASgS~Dg 305 (356)
T 2w18_A 245 SHPCA--KE--------------SESLRSPVFQLIVINPKTTLSVGVMLYCL-PPGQAGRFLEGDV--KDHCAAAILTSG 305 (356)
T ss_dssp C----------------------------CCEEEEEEETTTTEEEEEEEECC-CTTCCCCEEEEEE--ETTEEEEEETTS
T ss_pred ccCCC--cc--------------eeeccCCCcEEEEEECCCCEEEEEEEeec-cCCCcceeEcccc--CCCEEEEEcCCC
Confidence 54322 12 37899999999999999998774332100 2366655444443 377899999996
Q ss_pred CEEEEEECCCCeEEEEec-CCCCE-EEEEEeCC--EEEEEEcCCeEEEEEC
Q 001349 1004 AAVKMWSTSNYNMVGSLP-TLSEV-RAMVVSSE--LVYLGCKGGTVEIWDQ 1050 (1094)
Q Consensus 1004 ~~I~iwd~~~~~~~~~~~-~~~~v-~~l~~spd--~l~sgs~dg~I~vwd~ 1050 (1094)
+|+|||+.+++++.++. |...+ ..++|+|| ++++|+.|++|+|||.
T Consensus 306 -TIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 306 -TIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp -CEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred -cEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 99999999999999998 44444 46899998 8999999999999995
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-19 Score=201.95 Aligned_cols=269 Identities=13% Similarity=0.150 Sum_probs=191.9
Q ss_pred CcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEEC-CCeEEEEecCCCccee-EEEecccCCCe
Q 001349 785 MVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHS-DGTIKVWTGRGSILHL-IQQIREHTKAV 858 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~-Dg~I~vWd~~t~~~~~-~~~l~~H~~~V 858 (1094)
...+++++.++.|.+||.. +.......+...+ +++|+|+ ++++++. ++.|.+||..++ .. ...+..+..++
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~~~ 86 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLE--PPKVVAIQEGQSSM 86 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSS--SCEEEEEEECSSCC
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCC--ceeEEecccCCCCc
Confidence 3357888899999999987 3444445556667 9999996 5555554 899999999998 44 66676677766
Q ss_pred EEEEEecCCCEEEEEeCCC---cEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC
Q 001349 859 TGLAILQSGEMLYSGSLDK---TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS 935 (1094)
Q Consensus 859 ~sv~fspdg~~LaSgs~Dg---tI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~ 935 (1094)
.+++|+|+|++++++..++ +|.+||+.+++... ..........+. |+|+|+.+
T Consensus 87 ~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~~~-------~spdg~~l--------------- 142 (331)
T 3u4y_A 87 ADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIS--TIPIPYDAVGIA-------ISPNGNGL--------------- 142 (331)
T ss_dssp CCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEE--EEECCTTEEEEE-------ECTTSSCE---------------
T ss_pred cceEECCCCCEEEEecCCCCcccEEEEECCCCCeEE--EEECCCCccceE-------ECCCCCEE---------------
Confidence 6699999999999555553 89999999885322 222233344444 88888753
Q ss_pred CCceEEEEeCCEEEEEEcCCe-EEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCC
Q 001349 936 KYPKCLALVQGKVYCGCQDGA-IQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY 1014 (1094)
Q Consensus 936 ~~v~~l~~s~~~l~sgs~Dg~-I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~ 1014 (1094)
++++..++. |.+|++.......... ... ......+..++|+|++.+++.++..++.|.+||+.++
T Consensus 143 ------------~~~~~~~~~~i~~~~~~~~g~~~~~~-~~~-~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 208 (331)
T 3u4y_A 143 ------------ILIDRSSANTVRRFKIDADGVLFDTG-QEF-ISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNP 208 (331)
T ss_dssp ------------EEEEETTTTEEEEEEECTTCCEEEEE-EEE-ECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSST
T ss_pred ------------EEEecCCCceEEEEEECCCCcEeecC-Ccc-ccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 344455577 8999987654332221 112 2334568999999999866665554459999999998
Q ss_pred eE---EEEecCCCCEEEEEEeCC--EEEEEE-cCCeEEEEECCCCcE--EEEeccc---CCc---ceEEEEEcCCCCEEE
Q 001349 1015 NM---VGSLPTLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQKRQIR--IETLQTG---TSG---KVQCMALDDNEEFLV 1080 (1094)
Q Consensus 1015 ~~---~~~~~~~~~v~~l~~spd--~l~sgs-~dg~I~vwd~~t~~~--~~~l~~~---h~~---~I~~l~~Spdg~~L~ 1080 (1094)
+. +..+.....+..++|+|| ++++++ .++.|.+||..+++. +..+... +.. .+..++|+|||++|+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 288 (331)
T 3u4y_A 209 ENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLF 288 (331)
T ss_dssp TSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEE
T ss_pred cccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEE
Confidence 88 888887788889999998 565554 578899999999887 4444211 112 235689999999886
Q ss_pred EEe-CCCcEEEEeCC
Q 001349 1081 IGT-SDGRIQAWGLS 1094 (1094)
Q Consensus 1081 sgs-~DG~I~iWdls 1094 (1094)
+++ .++.|.+||++
T Consensus 289 v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 289 ISANISRELKVFTIS 303 (331)
T ss_dssp EEETTTTEEEEEETT
T ss_pred EecCCCCcEEEEEec
Confidence 655 46799999974
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=8.5e-19 Score=198.22 Aligned_cols=267 Identities=11% Similarity=0.199 Sum_probs=185.7
Q ss_pred EEEEeeCCCCeEEEeCC---cc-eeecccCCCcEEEEEEeCC--EEEEEECC-CeEEEEecC--CCcceeEEEecccCCC
Q 001349 787 KVLSNGHDSSADFWNHR---EL-VHVDSSENGKVLSIACFRD--KIFSGHSD-GTIKVWTGR--GSILHLIQQIREHTKA 857 (1094)
Q Consensus 787 ~l~s~s~dg~I~vWd~~---~~-~~~~~~h~~~V~~l~fspd--~LaSgs~D-g~I~vWd~~--t~~~~~~~~l~~H~~~ 857 (1094)
.+++++.|+.|++|+.. .. ......|...+.+++|+|+ +|++++.+ +.|.+|++. ++....+..+..+. .
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~ 85 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-S 85 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-C
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-C
Confidence 45555789999999985 11 1222457788999999997 78888876 999999998 66555566665544 7
Q ss_pred eEEEEEecCCCEEEEEeC-CCcEEEEECCCCc-eEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC
Q 001349 858 VTGLAILQSGEMLYSGSL-DKTARVWSIGNEE-IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS 935 (1094)
Q Consensus 858 V~sv~fspdg~~LaSgs~-DgtI~vWdi~~~~-~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~ 935 (1094)
+..++|+|+|+++++++. ++.|.+||+..+. ............+..+. |+|+|+.
T Consensus 86 ~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-------~s~dg~~---------------- 142 (343)
T 1ri6_A 86 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSAN-------ISPDNRT---------------- 142 (343)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCE-------ECTTSSE----------------
T ss_pred CcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEE-------ECCCCCE----------------
Confidence 899999999998877665 8899999995432 22333333333444444 8888875
Q ss_pred CCceEEEEeCCEEEEEE-cCCeEEEEECCC-CceeEEeccceeec-CCCCCeEEEEEeCCccEEEEEECCCCEEEEEECC
Q 001349 936 KYPKCLALVQGKVYCGC-QDGAIQEIDLAT-GTFATIQTGHRKLL-GKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS 1012 (1094)
Q Consensus 936 ~~v~~l~~s~~~l~sgs-~Dg~I~iwDl~~-~~~~~~~~~~~~~~-~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~ 1012 (1094)
+++++ .++.|.+||+.+ ++....... ... .....+..++|+|++.+++.++..++.|.+||+.
T Consensus 143 ------------l~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~ 208 (343)
T 1ri6_A 143 ------------LWVPALKQDRICLFTVSDDGHLVAQDPA--EVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELK 208 (343)
T ss_dssp ------------EEEEEGGGTEEEEEEECTTSCEEEEEEE--EEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESS
T ss_pred ------------EEEecCCCCEEEEEEecCCCceeeeccc--ccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 44555 789999999987 654322100 111 2235788999999998776665444599999995
Q ss_pred C--CeE--EEEec---C----CCCEEEEEEeCC--EEE-EEEcCCeEEEEECC--C--CcEEEEecccCCcceEEEEEcC
Q 001349 1013 N--YNM--VGSLP---T----LSEVRAMVVSSE--LVY-LGCKGGTVEIWDQK--R--QIRIETLQTGTSGKVQCMALDD 1074 (1094)
Q Consensus 1013 ~--~~~--~~~~~---~----~~~v~~l~~spd--~l~-sgs~dg~I~vwd~~--t--~~~~~~l~~~h~~~I~~l~~Sp 1074 (1094)
. +.. ...+. . ...+..++|+|+ +++ ++..++.|++||+. + .+.+..+. .+. .+.+++|+|
T Consensus 209 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~-~~~-~~~~~~~s~ 286 (343)
T 1ri6_A 209 DPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP-TET-QPRGFNVDH 286 (343)
T ss_dssp CTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE-CSS-SCCCEEECT
T ss_pred CCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec-CCC-ccceEEECC
Confidence 3 432 22222 1 245778999998 565 44578999999998 3 34555553 333 389999999
Q ss_pred CCCEEEEEe-CCCcEEEEeC
Q 001349 1075 NEEFLVIGT-SDGRIQAWGL 1093 (1094)
Q Consensus 1075 dg~~L~sgs-~DG~I~iWdl 1093 (1094)
||++|++++ .++.|.+|++
T Consensus 287 dg~~l~~~~~~~~~v~v~~~ 306 (343)
T 1ri6_A 287 SGKYLIAAGQKSHHISVYEI 306 (343)
T ss_dssp TSSEEEEECTTTCEEEEEEE
T ss_pred CCCEEEEecCCCCeEEEEEE
Confidence 999888887 6899999964
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.84 E-value=6.8e-19 Score=206.63 Aligned_cols=242 Identities=12% Similarity=0.097 Sum_probs=186.7
Q ss_pred CcEEEEeeCC------CCeEEEeCC-cceeecccCCCcEEEEEEeCC--EEEEEECCC---eEEEEecCCCcceeEEEec
Q 001349 785 MVKVLSNGHD------SSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDG---TIKVWTGRGSILHLIQQIR 852 (1094)
Q Consensus 785 ~~~l~s~s~d------g~I~vWd~~-~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg---~I~vWd~~t~~~~~~~~l~ 852 (1094)
+.++++++.+ +.|++||.. .....+.+|.+.|.+++|+|| .|++++.|+ .|++||+.++ +. ..+.
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg--~~-~~l~ 219 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG--AV-RQVA 219 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC--CE-EEEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC--cE-EEee
Confidence 5566665554 799999987 345677789999999999997 899998885 9999999998 33 3566
Q ss_pred ccCCCeEEEEEecCCCEEE-EEeCCCc--EEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeE
Q 001349 853 EHTKAVTGLAILQSGEMLY-SGSLDKT--ARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKT 929 (1094)
Q Consensus 853 ~H~~~V~sv~fspdg~~La-Sgs~Dgt--I~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i 929 (1094)
.|.+.+.+++|+|||++|+ +++.|+. |++||+.+++.. ....+...+.++. |+|||+.+
T Consensus 220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~--~l~~~~~~~~~~~-------~spdg~~l--------- 281 (415)
T 2hqs_A 220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR--QVTDGRSNNTEPT-------WFPDSQNL--------- 281 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE--ECCCCSSCEEEEE-------ECTTSSEE---------
T ss_pred cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE--eCcCCCCcccceE-------ECCCCCEE---------
Confidence 7888999999999999888 6766665 999999987643 3344455666666 89999864
Q ss_pred EEEcCCCCceEEEEeCCEEEEEEc-CC--eEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC--C
Q 001349 930 KLLNSSKYPKCLALVQGKVYCGCQ-DG--AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG--A 1004 (1094)
Q Consensus 930 ~l~~~~~~v~~l~~s~~~l~sgs~-Dg--~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg--~ 1004 (1094)
++++. ++ .|.+||+.++... .+..|...+.+++|+|++.+++.++.++ .
T Consensus 282 -------------------~~~s~~~g~~~i~~~d~~~~~~~-------~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~ 335 (415)
T 2hqs_A 282 -------------------AFTSDQAGRPQVYKVNINGGAPQ-------RITWEGSQNQDADVSSDGKFMVMVSSNGGQQ 335 (415)
T ss_dssp -------------------EEEECTTSSCEEEEEETTSSCCE-------ECCCSSSEEEEEEECTTSSEEEEEEECSSCE
T ss_pred -------------------EEEECCCCCcEEEEEECCCCCEE-------EEecCCCcccCeEECCCCCEEEEEECcCCce
Confidence 33443 34 6778899887643 3344566788999999999998887652 3
Q ss_pred EEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCC---eEEEEECCCCcEEEEecccCCcceEEEEEcCCC
Q 001349 1005 AVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGG---TVEIWDQKRQIRIETLQTGTSGKVQCMALDDNE 1076 (1094)
Q Consensus 1005 ~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg---~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg 1076 (1094)
.|.+||+.+++.. .+..+..+.+++|+|| ++++++.++ .|++||+.. .....+ .+|.+.|++++|+|.-
T Consensus 336 ~i~~~d~~~~~~~-~l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g-~~~~~l-~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 336 HIAKQDLATGGVQ-VLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG-RFKARL-PATDGQVKFPAWSPYL 409 (415)
T ss_dssp EEEEEETTTCCEE-ECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTS-CCEEEC-CCSSSEEEEEEECCCC
T ss_pred EEEEEECCCCCEE-EecCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC-CcEEEe-eCCCCCCcCCcccccc
Confidence 8999999988774 4544448999999998 677777666 899999874 456667 5788999999999964
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=6.4e-19 Score=213.86 Aligned_cols=255 Identities=11% Similarity=0.080 Sum_probs=196.9
Q ss_pred EeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEC--CCCceEEEEecc
Q 001349 821 CFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSI--GNEEIHCVQVHD 896 (1094)
Q Consensus 821 fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi--~~~~~~~~~~~~ 896 (1094)
|+|+ ++++++.|++|.+||..++ +++.++..+.. +..++|+|||++|++++.|++|++||+ .+++ .+....
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~--~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~--~~~~i~ 219 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSK--KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT--KVAEIK 219 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTC--CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE--EEEEEE
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCc--eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCc--EEEEEe
Confidence 6665 8888999999999999999 67888874333 899999999999999999999999999 6654 333333
Q ss_pred cCccceeeeecCceEEEee----CCCeEEEEE-eCCeEEEEcCCC-----------------------CceEEEEeC--C
Q 001349 897 IKDQIQNLAVSNSILCFIP----QGAGIKVHL-RNGKTKLLNSSK-----------------------YPKCLALVQ--G 946 (1094)
Q Consensus 897 ~~~~V~~v~~~~~~~~fsp----dg~~l~~~~-~~g~i~l~~~~~-----------------------~v~~l~~s~--~ 946 (1094)
....+..++ |+| ||+++++++ .++.+.+|+... .+..+.+++ +
T Consensus 220 ~g~~p~~va-------~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~ 292 (543)
T 1nir_A 220 IGIEARSVE-------SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHP 292 (543)
T ss_dssp CCSEEEEEE-------ECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSS
T ss_pred cCCCcceEE-------eCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCC
Confidence 444556665 999 999998887 479999997421 355667764 2
Q ss_pred -EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec----
Q 001349 947 -KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---- 1021 (1094)
Q Consensus 947 -~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~---- 1021 (1094)
.+++...++.|.+||+.+++.... .. ..+...+..+.|+|++.++++++.++++|.+||+.+++++..+.
T Consensus 293 ~~~vs~~~~g~i~vvd~~~~~~l~~----~~-i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ 367 (543)
T 1nir_A 293 EFIVNVKETGKVLLVNYKDIDNLTV----TS-IGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKT 367 (543)
T ss_dssp EEEEEETTTTEEEEEECTTSSSCEE----EE-EECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred EEEEEECCCCeEEEEEecCCCccee----EE-eccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCC
Confidence 366777899999999988765431 11 23456688899999999877666544599999999999988876
Q ss_pred -CCCCEEEEEEeCC---EEEEEE-cCCeEEEEECCC-------CcEEEEecccCCcceEEEEEcCCCCEEEEEe------
Q 001349 1022 -TLSEVRAMVVSSE---LVYLGC-KGGTVEIWDQKR-------QIRIETLQTGTSGKVQCMALDDNEEFLVIGT------ 1083 (1094)
Q Consensus 1022 -~~~~v~~l~~spd---~l~sgs-~dg~I~vwd~~t-------~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs------ 1083 (1094)
|.+....+ ++|+ .++++. .|++|.|||+.+ ++++.++. +|.+.+..++|+|||++|++++
T Consensus 368 ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~-~~g~~~~~v~~~pdg~~l~v~~~~~~~~ 445 (543)
T 1nir_A 368 PHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ-GQGGGSLFIKTHPKSSHLYVDTTFNPDA 445 (543)
T ss_dssp BCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE-CSCSCCCCEECCTTCCEEEECCTTCSSH
T ss_pred CCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEE-cCCCCceEEEcCCCCCcEEEecCCCCCc
Confidence 33333333 4666 455554 589999999998 89999994 7888889999999999999987
Q ss_pred -CCCcEEEEeCC
Q 001349 1084 -SDGRIQAWGLS 1094 (1094)
Q Consensus 1084 -~DG~I~iWdls 1094 (1094)
.+++|.+||+.
T Consensus 446 ~~~~~v~v~d~~ 457 (543)
T 1nir_A 446 RISQSVAVFDLK 457 (543)
T ss_dssp HHHTCEEEEETT
T ss_pred ccCceEEEEECC
Confidence 37799999974
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.4e-19 Score=193.98 Aligned_cols=249 Identities=12% Similarity=0.058 Sum_probs=180.9
Q ss_pred EeeCCCCeEEEeCCc-ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCC-CcceeEEEeccc-CCCeEEEEEe
Q 001349 790 SNGHDSSADFWNHRE-LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG-SILHLIQQIREH-TKAVTGLAIL 864 (1094)
Q Consensus 790 s~s~dg~I~vWd~~~-~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t-~~~~~~~~l~~H-~~~V~sv~fs 864 (1094)
.++.|+.|++||... ....+..|.+.|.+++|+|+ +|++++ ++.|++||+.+ + ........| ...|.+++|+
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDP--SPEKVDTGFATICNNDHGIS 93 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCC--SCEECCCTTCCCBCSCCEEC
T ss_pred CCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCC--CceEeccccccccccceEEC
Confidence 456789999999873 34456678999999999997 777776 88999999998 7 455555555 4778999999
Q ss_pred cCCCEEEEEe--CCCcEEEEEC--CCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceE
Q 001349 865 QSGEMLYSGS--LDKTARVWSI--GNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKC 940 (1094)
Q Consensus 865 pdg~~LaSgs--~DgtI~vWdi--~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~ 940 (1094)
|||++|++++ .++.++||.+ .++....+ .....+..+. |+|+|+.+
T Consensus 94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~-------~spdg~~l-------------------- 143 (297)
T 2ojh_A 94 PDGALYAISDKVEFGKSAIYLLPSTGGTPRLM---TKNLPSYWHG-------WSPDGKSF-------------------- 143 (297)
T ss_dssp TTSSEEEEEECTTTSSCEEEEEETTCCCCEEC---CSSSSEEEEE-------ECTTSSEE--------------------
T ss_pred CCCCEEEEEEeCCCCcceEEEEECCCCceEEe---ecCCCccceE-------ECCCCCEE--------------------
Confidence 9999999999 3455666654 45432221 1122344444 88888763
Q ss_pred EEEeCCEEEEEEcCCeEEEEECC--CCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECC-CCeEE
Q 001349 941 LALVQGKVYCGCQDGAIQEIDLA--TGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS-NYNMV 1017 (1094)
Q Consensus 941 l~~s~~~l~sgs~Dg~I~iwDl~--~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~-~~~~~ 1017 (1094)
+++++.|+.+++|++. ++.. ..+..|...+.++.|+|++.+++.++..++.+++|++. .+...
T Consensus 144 -------~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~ 209 (297)
T 2ojh_A 144 -------TYCGIRDQVFDIYSMDIDSGVE-------TRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSV 209 (297)
T ss_dssp -------EEEEEETTEEEEEEEETTTCCE-------EECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCE
T ss_pred -------EEEECCCCceEEEEEECCCCcc-------eEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCc
Confidence 3466778888888853 3433 34456677899999999999887776433489999876 44455
Q ss_pred EEec-CCCCEEEEEEeCC--EEEEEEcC-----------CeEEEEECCCCcEE--EEecccCCcceEEEEEcCCCCEEEE
Q 001349 1018 GSLP-TLSEVRAMVVSSE--LVYLGCKG-----------GTVEIWDQKRQIRI--ETLQTGTSGKVQCMALDDNEEFLVI 1081 (1094)
Q Consensus 1018 ~~~~-~~~~v~~l~~spd--~l~sgs~d-----------g~I~vwd~~t~~~~--~~l~~~h~~~I~~l~~Spdg~~L~s 1081 (1094)
..+. +...+..+.|+|+ ++++++.+ +.|++||+.+++.. ..+ .+|...+.+++|+|||++|++
T Consensus 210 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~ 288 (297)
T 2ojh_A 210 ERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDL-FGGQGTMNSPNWSPDGDEFAY 288 (297)
T ss_dssp EECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEE-EESTTTSCSCCBCTTSSEEEE
T ss_pred EEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeecc-CCCCcccccceECCCCCEEEE
Confidence 5555 5667889999998 67776654 56999999988653 333 367788999999999999988
Q ss_pred EeCCC
Q 001349 1082 GTSDG 1086 (1094)
Q Consensus 1082 gs~DG 1086 (1094)
++.|.
T Consensus 289 ~~~~~ 293 (297)
T 2ojh_A 289 VRYFP 293 (297)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 87654
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-18 Score=219.34 Aligned_cols=308 Identities=11% Similarity=0.065 Sum_probs=211.3
Q ss_pred cccccccccCcEEEEeeC-CC-----CeEEEeCCc--ceeecccCC------------------------CcEEEEEEeC
Q 001349 776 RKYSPLAFEMVKVLSNGH-DS-----SADFWNHRE--LVHVDSSEN------------------------GKVLSIACFR 823 (1094)
Q Consensus 776 ~~~~~~~~d~~~l~s~s~-dg-----~I~vWd~~~--~~~~~~~h~------------------------~~V~~l~fsp 823 (1094)
.....+++||+++++++. |+ .|.+||..+ .......|. ..|.+++|+|
T Consensus 39 ~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Sp 118 (741)
T 2ecf_A 39 LMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSP 118 (741)
T ss_dssp CEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECT
T ss_pred CCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECC
Confidence 345678889999999998 88 899999873 333333332 2378999999
Q ss_pred C--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccc
Q 001349 824 D--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQI 901 (1094)
Q Consensus 824 d--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V 901 (1094)
| +|++++. ++|++||+.++.......+..|...+..++|||||++|+.++. +.|++||+.+++...+.... ...+
T Consensus 119 Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~-~~~~ 195 (741)
T 2ecf_A 119 DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADG-STTI 195 (741)
T ss_dssp TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCC-CSSE
T ss_pred CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCC-ccce
Confidence 7 7888776 9999999988710034456778889999999999999999885 68999999987543322211 1111
Q ss_pred ee-e--------eecCceEEEeeCCCeEEEEEeCC---------------------------------eEEEEcCCC---
Q 001349 902 QN-L--------AVSNSILCFIPQGAGIKVHLRNG---------------------------------KTKLLNSSK--- 936 (1094)
Q Consensus 902 ~~-v--------~~~~~~~~fspdg~~l~~~~~~g---------------------------------~i~l~~~~~--- 936 (1094)
.. + ......+.|+|||+.+++...++ .+.+|+..+
T Consensus 196 ~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 275 (741)
T 2ecf_A 196 GNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQ 275 (741)
T ss_dssp EESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCC
T ss_pred eccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCc
Confidence 00 0 00012345999999999887664 666777433
Q ss_pred ------------CceEEEEeC--CEEEEEEc-----CCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEE
Q 001349 937 ------------YPKCLALVQ--GKVYCGCQ-----DGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTA 997 (1094)
Q Consensus 937 ------------~v~~l~~s~--~~l~sgs~-----Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~la 997 (1094)
.+..+.| + ..|++++. ++.|.+||+.+++......... .+....+..+.|+|++.+++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~~~~~~spdg~~~~ 352 (741)
T 2ecf_A 276 TQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS--PTWVPLHNSLRFLDDGSILW 352 (741)
T ss_dssp CEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC--SSCCCCCSCCEECTTSCEEE
T ss_pred eEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC--CCcCCcCCceEECCCCeEEE
Confidence 2345666 4 35665543 5689999999998764432110 11111456889999999888
Q ss_pred EEECCCCEEEEEECC-CCeEEEEec-CCCCEEEE-EEeCC--EE-EEEEcCC--eEEEEECCC-CcEEEEecccCCcceE
Q 001349 998 STSLDGAAVKMWSTS-NYNMVGSLP-TLSEVRAM-VVSSE--LV-YLGCKGG--TVEIWDQKR-QIRIETLQTGTSGKVQ 1068 (1094)
Q Consensus 998 s~s~Dg~~I~iwd~~-~~~~~~~~~-~~~~v~~l-~~spd--~l-~sgs~dg--~I~vwd~~t-~~~~~~l~~~h~~~I~ 1068 (1094)
+++.|| .++||.+. ++. ...+. +...+..+ .|+|| .+ ++++.++ .++||++.. +.....+. + ...+.
T Consensus 353 ~~~~~g-~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~-~-~~~~~ 428 (741)
T 2ecf_A 353 SSERTG-FQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS-K-APGMH 428 (741)
T ss_dssp EECTTS-SCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC-C-SCSEE
T ss_pred EecCCC-ccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc-c-CCCce
Confidence 887775 67777665 344 56665 56678777 59998 45 4555565 899999864 55566663 3 55788
Q ss_pred EEEEcCCCCEEEEEeCC----CcEEEEeC
Q 001349 1069 CMALDDNEEFLVIGTSD----GRIQAWGL 1093 (1094)
Q Consensus 1069 ~l~~Spdg~~L~sgs~D----G~I~iWdl 1093 (1094)
.++|||||++|+....+ +.+.+|+.
T Consensus 429 ~~~~spdg~~l~~~~~~~~~p~~~~l~~~ 457 (741)
T 2ecf_A 429 SASFARNASVYVDSWSNNSTPPQIELFRA 457 (741)
T ss_dssp EEEECTTSSEEEEEEEETTEEEEEEEEET
T ss_pred EEEECCCCCEEEEEecCCCCCCeEEEEEc
Confidence 99999999988866543 45777764
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.9e-18 Score=191.40 Aligned_cols=256 Identities=10% Similarity=0.077 Sum_probs=183.3
Q ss_pred cEEEEeeCCCCeEEEeCCc--ceeecc-cCCC-cEEEEEEeCC--E-EEEEECCCeEEEEecCCCcceeEEEecc-c---
Q 001349 786 VKVLSNGHDSSADFWNHRE--LVHVDS-SENG-KVLSIACFRD--K-IFSGHSDGTIKVWTGRGSILHLIQQIRE-H--- 854 (1094)
Q Consensus 786 ~~l~s~s~dg~I~vWd~~~--~~~~~~-~h~~-~V~~l~fspd--~-LaSgs~Dg~I~vWd~~t~~~~~~~~l~~-H--- 854 (1094)
.++++++.++.|.+||..+ ....+. ++.. .+..++|+|+ . +++++.++.|.+||+.++ +.+..+.. +
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~ 79 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG--ETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC--CEEEEEECCBTTE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCC--CeEeeEEcCCccc
Confidence 4789999999999999873 233332 2222 5889999996 4 556667899999999988 55555542 2
Q ss_pred -CCCeEEEEEecCCCEEEEEe------------CCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEE
Q 001349 855 -TKAVTGLAILQSGEMLYSGS------------LDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIK 921 (1094)
Q Consensus 855 -~~~V~sv~fspdg~~LaSgs------------~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~ 921 (1094)
...+..++|+|+|+++++++ .++.|.+||+.+++.. ........+..+. |+|+|+.
T Consensus 80 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~--~~~~~~~~~~~~~-------~s~dg~~-- 148 (337)
T 1pby_B 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR--KAFEAPRQITMLA-------WARDGSK-- 148 (337)
T ss_dssp EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE--EEEECCSSCCCEE-------ECTTSSC--
T ss_pred ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEE--EEEeCCCCcceeE-------ECCCCCE--
Confidence 23678899999999999886 5799999999987532 2222233344444 8888875
Q ss_pred EEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEEC
Q 001349 922 VHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSL 1001 (1094)
Q Consensus 922 ~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~ 1001 (1094)
++++ ++.|.+||+.+++........ .+..+ +.|+|++..++..+.
T Consensus 149 --------------------------l~~~--~~~i~~~d~~~~~~~~~~~~~----~~~~~---~~~s~dg~~l~~~~~ 193 (337)
T 1pby_B 149 --------------------------LYGL--GRDLHVMDPEAGTLVEDKPIQ----SWEAE---TYAQPDVLAVWNQHE 193 (337)
T ss_dssp --------------------------EEEE--SSSEEEEETTTTEEEEEECST----TTTTT---TBCCCBCCCCCCCCT
T ss_pred --------------------------EEEe--CCeEEEEECCCCcEeeeeecc----ccCCC---ceeCCCccEEeeecc
Confidence 3344 678999999988776432211 11122 256777665544333
Q ss_pred CCC-----------------------EEEEEECCCCeEEEEec---CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCC
Q 001349 1002 DGA-----------------------AVKMWSTSNYNMVGSLP---TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQ 1053 (1094)
Q Consensus 1002 Dg~-----------------------~I~iwd~~~~~~~~~~~---~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~ 1053 (1094)
+++ .|.+||+.+++.. .+. +...+.+++|+|| +++++ ++.|++||+.++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~ 270 (337)
T 1pby_B 194 SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN 270 (337)
T ss_dssp TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT
T ss_pred CCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCC
Confidence 322 4789999998765 332 4567889999998 67766 799999999999
Q ss_pred cEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1054 IRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1054 ~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
+.+..+.. ...+.+++|+|||++|++++.++.|++||+.
T Consensus 271 ~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~ 309 (337)
T 1pby_B 271 ASIKRVPL--PHSYYSVNVSTDGSTVWLGGALGDLAAYDAE 309 (337)
T ss_dssp EEEEEEEC--SSCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred cCcceecC--CCceeeEEECCCCCEEEEEcCCCcEEEEECc
Confidence 98888753 3468899999999999999999999999973
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-17 Score=186.79 Aligned_cols=262 Identities=13% Similarity=0.129 Sum_probs=193.1
Q ss_pred ccccccCcEEEEeeC-------CCCeEEEeCCc--ceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcce
Q 001349 779 SPLAFEMVKVLSNGH-------DSSADFWNHRE--LVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILH 846 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~-------dg~I~vWd~~~--~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~ 846 (1094)
..+++++.++++++. ++.|.+||..+ ...... +...+..++|+++ .++++..++.|.+||..++ +
T Consensus 46 ~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~--~ 122 (353)
T 3vgz_A 46 MAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH-NDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTG--E 122 (353)
T ss_dssp EEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE-ESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTC--C
T ss_pred eEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe-cCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCC--e
Confidence 456778888877764 56899999873 223332 2345788999996 4555566899999999998 5
Q ss_pred eEEEecccCCC---------eEEEEEecCCCEEEEEe--CCCcEEEEECCCCceEEEEecc-cCccceeeeecCceEEEe
Q 001349 847 LIQQIREHTKA---------VTGLAILQSGEMLYSGS--LDKTARVWSIGNEEIHCVQVHD-IKDQIQNLAVSNSILCFI 914 (1094)
Q Consensus 847 ~~~~l~~H~~~---------V~sv~fspdg~~LaSgs--~DgtI~vWdi~~~~~~~~~~~~-~~~~V~~v~~~~~~~~fs 914 (1094)
.+..+..+... +.+++|+|+|+++++++ .++.|.+||..+++.. .... ....+..+. |+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~-------~s 193 (353)
T 3vgz_A 123 VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLK--TAIQNTGKMSTGLA-------LD 193 (353)
T ss_dssp EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEE--EEECCCCTTCCCCE-------EE
T ss_pred eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceE--EEecCCCCccceEE-------EC
Confidence 66666554432 78999999999887776 4789999999987532 2222 223344444 88
Q ss_pred eCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCcc
Q 001349 915 PQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLV 994 (1094)
Q Consensus 915 pdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~ 994 (1094)
|+|+. +++++.++.|.+||+.+++....... ...++...+..++|+|++.
T Consensus 194 ~dg~~----------------------------l~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~s~dg~ 243 (353)
T 3vgz_A 194 SEGKR----------------------------LYTTNADGELITIDTADNKILSRKKL--LDDGKEHFFINISLDTARQ 243 (353)
T ss_dssp TTTTE----------------------------EEEECTTSEEEEEETTTTEEEEEEEC--CCSSSCCCEEEEEEETTTT
T ss_pred CCCCE----------------------------EEEEcCCCeEEEEECCCCeEEEEEEc--CCCCCCcccceEEECCCCC
Confidence 88875 66677789999999999887644321 1123455788999999998
Q ss_pred EEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEE-cCCeEEEEECCCCcEEEEecccCCcceEEEE
Q 001349 995 YTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQKRQIRIETLQTGTSGKVQCMA 1071 (1094)
Q Consensus 995 ~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs-~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~ 1071 (1094)
+++.++.+++.|.+||..+++.+..+..... ..++|+|+ ++++++ .++.|.+||..+++.+..+. ....+.+++
T Consensus 244 ~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~ 320 (353)
T 3vgz_A 244 RAFITDSKAAEVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD--TPTHPNSLA 320 (353)
T ss_dssp EEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE--CCSEEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe--cCCCCCeEE
Confidence 7777766656999999999998888874433 56899988 565555 68999999999999988885 334789999
Q ss_pred EcCCCCEEEEEeCC
Q 001349 1072 LDDNEEFLVIGTSD 1085 (1094)
Q Consensus 1072 ~Spdg~~L~sgs~D 1085 (1094)
|+|||++|++++.+
T Consensus 321 ~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 321 LSADGKTLYVSVKQ 334 (353)
T ss_dssp ECTTSCEEEEEEEC
T ss_pred EcCCCCEEEEEEcc
Confidence 99999977776655
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.8e-17 Score=187.22 Aligned_cols=262 Identities=11% Similarity=0.120 Sum_probs=178.9
Q ss_pred CCCCeEEEeCCc--c--ee-ecccCCCcEEEEEEeCC-EEEEEEC---CCeEEEEecCCCcceeEEEecccCCCeEEEEE
Q 001349 793 HDSSADFWNHRE--L--VH-VDSSENGKVLSIACFRD-KIFSGHS---DGTIKVWTGRGSILHLIQQIREHTKAVTGLAI 863 (1094)
Q Consensus 793 ~dg~I~vWd~~~--~--~~-~~~~h~~~V~~l~fspd-~LaSgs~---Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~f 863 (1094)
.++.|.+|+++. . .. ....+...+..++|+|| .+++++. ++.|++||+.++..+.+..+..|...+..++|
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence 356688887752 1 11 22345677888999997 4555544 68999999988755566666678888999999
Q ss_pred ecCCCEEEEEe-CCCcEEEEECC-CCceEEEEecccC--c--------cceeeeecCceEEEeeCCCeEEEEEeCCeEEE
Q 001349 864 LQSGEMLYSGS-LDKTARVWSIG-NEEIHCVQVHDIK--D--------QIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL 931 (1094)
Q Consensus 864 spdg~~LaSgs-~DgtI~vWdi~-~~~~~~~~~~~~~--~--------~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l 931 (1094)
+|||++|++++ .+++|.+|++. ++....+...... . .+..+. |+|+|+ +
T Consensus 94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~-------~spdg~-l----------- 154 (347)
T 3hfq_A 94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTD-------LTPDNR-L----------- 154 (347)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEE-------ECTTSC-E-----------
T ss_pred CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEE-------ECCCCc-E-----------
Confidence 99999998888 68999999995 4433333322111 1 122333 667666 2
Q ss_pred EcCCCCceEEEEeCCEEEEEEcCCeEEEEECC-CCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEE
Q 001349 932 LNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA-TGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWS 1010 (1094)
Q Consensus 932 ~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~-~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd 1010 (1094)
+++...++.|.+||+. ++....... ........+..++|+|++.+++..+..++.|.+|+
T Consensus 155 ----------------~v~~~~~~~v~~~~~~~~g~~~~~~~---~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~ 215 (347)
T 3hfq_A 155 ----------------AVIDLGSDKVYVYNVSDAGQLSEQSV---LTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLK 215 (347)
T ss_dssp ----------------EEEETTTTEEEEEEECTTSCEEEEEE---EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ----------------EEEeCCCCEEEEEEECCCCcEEEeee---EEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 4455567889999998 554432110 01112346788999999997766655556999999
Q ss_pred CCC--CeE--EEEec-CC------CCEEEEEEeCC--EE-EEEEcCCeEEEEECCC---CcEEEEecccCCcceEEEEEc
Q 001349 1011 TSN--YNM--VGSLP-TL------SEVRAMVVSSE--LV-YLGCKGGTVEIWDQKR---QIRIETLQTGTSGKVQCMALD 1073 (1094)
Q Consensus 1011 ~~~--~~~--~~~~~-~~------~~v~~l~~spd--~l-~sgs~dg~I~vwd~~t---~~~~~~l~~~h~~~I~~l~~S 1073 (1094)
+.. ++. +..+. .. ..+..++|+|| ++ +++..++.|.+||+.. .+.+..+ ..+...+..++|+
T Consensus 216 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~-~~~~~~~~~~~~s 294 (347)
T 3hfq_A 216 YDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQI-STEGDFPRDFDLD 294 (347)
T ss_dssp EETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEE-ECSSSCCCEEEEC
T ss_pred ecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEE-ecCCCCcCeEEEC
Confidence 874 543 22332 11 45889999999 55 4556689999999873 2455555 3455678999999
Q ss_pred CCCCEEEEEeCC-CcEEEEeC
Q 001349 1074 DNEEFLVIGTSD-GRIQAWGL 1093 (1094)
Q Consensus 1074 pdg~~L~sgs~D-G~I~iWdl 1093 (1094)
|||++|++++.+ +.|.+|++
T Consensus 295 pdg~~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 295 PTEAFVVVVNQNTDNATLYAR 315 (347)
T ss_dssp TTSSEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEEEcCCCcEEEEEE
Confidence 999998888764 89999954
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-18 Score=216.88 Aligned_cols=310 Identities=9% Similarity=0.030 Sum_probs=205.1
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCC---cEEEEEEeCC--EEEEEECC---------CeEEEEecC
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENG---KVLSIACFRD--KIFSGHSD---------GTIKVWTGR 841 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~---~V~~l~fspd--~LaSgs~D---------g~I~vWd~~ 841 (1094)
...+++||.++++ +.||+|++||.. +....+.+|.. .|.+++|||| +|++++.+ +.|++||+.
T Consensus 21 ~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~ 99 (723)
T 1xfd_A 21 EAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP 99 (723)
T ss_dssp CCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred ccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECC
Confidence 4567788987766 789999999987 34455556654 4999999998 88888764 788899999
Q ss_pred CCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccc-ee-ee---------ecCce
Q 001349 842 GSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQI-QN-LA---------VSNSI 910 (1094)
Q Consensus 842 t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V-~~-v~---------~~~~~ 910 (1094)
++....+....+|...+..++|||||+.|+.++. +.|++||+.+++...+.... ...+ .. +. -....
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~-~~~~~~~g~~~~v~~ee~~~~~~~ 177 (723)
T 1xfd_A 100 HGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTG-KEGVIYNGLSDWLYEEEILKTHIA 177 (723)
T ss_dssp SCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCC-BTTTEEEEECCHHHHHTTSSSSEE
T ss_pred CCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCC-CCCceECcccceeEEEEeccCcce
Confidence 9843333333456666999999999999999987 79999999988644433221 1111 00 00 00012
Q ss_pred EEEeeCCCeEEEEEeCC-eEEEEcC-------CCCceEEEEeC-CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCC
Q 001349 911 LCFIPQGAGIKVHLRNG-KTKLLNS-------SKYPKCLALVQ-GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKA 981 (1094)
Q Consensus 911 ~~fspdg~~l~~~~~~g-~i~l~~~-------~~~v~~l~~s~-~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~ 981 (1094)
+.|+|||+.++....++ .+.+|.. ...+..+.+.. +.. ..+..|++||+.+++....+........+.
T Consensus 178 ~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~---~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~ 254 (723)
T 1xfd_A 178 HWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSE---NPSISLHVIGLNGPTHDLEMMPPDDPRMRE 254 (723)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSC---CCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred EEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCC---CCeeEEEEEECCCCceeEEeeCCccCCCcc
Confidence 44999999998887653 3444432 12344555542 110 223489999999887543333222223346
Q ss_pred CCeEEEEEeCCccEEEEEECC---CCEEEEEECCCCeEEEEec--CCCCE----EEEEEeCC--EEE-E-EEcCC-----
Q 001349 982 NPVHALQVHNGLVYTASTSLD---GAAVKMWSTSNYNMVGSLP--TLSEV----RAMVVSSE--LVY-L-GCKGG----- 1043 (1094)
Q Consensus 982 ~~V~sl~fs~~~~~las~s~D---g~~I~iwd~~~~~~~~~~~--~~~~v----~~l~~spd--~l~-s-gs~dg----- 1043 (1094)
..+..++|+||+.++++.+.. ...|.+||+.+++....+. +...+ ..++|+|| .++ . +..++
T Consensus 255 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~ 334 (723)
T 1xfd_A 255 YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKF 334 (723)
T ss_dssp EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCE
T ss_pred ceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcce
Confidence 678999999999988766432 2489999999988766554 33333 37899998 344 3 55667
Q ss_pred -eEEEEE-CCCCc--EEEEecccCCcceEEEEEcCCCCEEEEEeCC---CcEEEEeC
Q 001349 1044 -TVEIWD-QKRQI--RIETLQTGTSGKVQCMALDDNEEFLVIGTSD---GRIQAWGL 1093 (1094)
Q Consensus 1044 -~I~vwd-~~t~~--~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~D---G~I~iWdl 1093 (1094)
.|++|| ..++. +...+..++......++|+|||+.|+..+.+ +.+++|++
T Consensus 335 ~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 391 (723)
T 1xfd_A 335 YHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSA 391 (723)
T ss_dssp EEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEE
T ss_pred eEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEE
Confidence 577777 34444 1445533333333346999999999766655 78999986
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-17 Score=218.22 Aligned_cols=296 Identities=11% Similarity=0.060 Sum_probs=223.9
Q ss_pred cccccccccCcEEEEeeCC------CCeEEEeCCc-ceeecccCCCcE-------EEEEEeCC--EEEEEECC------C
Q 001349 776 RKYSPLAFEMVKVLSNGHD------SSADFWNHRE-LVHVDSSENGKV-------LSIACFRD--KIFSGHSD------G 833 (1094)
Q Consensus 776 ~~~~~~~~d~~~l~s~s~d------g~I~vWd~~~-~~~~~~~h~~~V-------~~l~fspd--~LaSgs~D------g 833 (1094)
.....|++||++|++++.+ ..|.+|+... ....+..|.+.+ .+++|+|| ++++++.+ .
T Consensus 55 v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~ 134 (1045)
T 1k32_A 55 INNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMT 134 (1045)
T ss_dssp EEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCC
T ss_pred ccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccc
Confidence 4456788999999988654 4788999873 356677888888 99999997 77777754 4
Q ss_pred eEEEEecCCCccee-----------------------------------------------EEEecccCCCeEEEEEecC
Q 001349 834 TIKVWTGRGSILHL-----------------------------------------------IQQIREHTKAVTGLAILQS 866 (1094)
Q Consensus 834 ~I~vWd~~t~~~~~-----------------------------------------------~~~l~~H~~~V~sv~fspd 866 (1094)
.|++||+.++.... ...+.+|...+.++.|+++
T Consensus 135 ~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d 214 (1045)
T 1k32_A 135 CLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH 214 (1045)
T ss_dssp EEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT
T ss_pred eEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC
Confidence 68888876652110 1233567888889999988
Q ss_pred CCEEEEEeCCCcEEEEECCC--CceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC---------
Q 001349 867 GEMLYSGSLDKTARVWSIGN--EEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS--------- 935 (1094)
Q Consensus 867 g~~LaSgs~DgtI~vWdi~~--~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~--------- 935 (1094)
.++++++.|+++++|.++. +....+. .+. .+... .|+|||+.++.. .++.+.+|+..
T Consensus 215 -~l~~~~~~dg~~~l~~~~~~g~~~~~l~--~~~-~~~~~-------~~SpDG~~la~~-~~~~i~~~d~~~~~l~~l~~ 282 (1045)
T 1k32_A 215 -RIYFITDIDGFGQIYSTDLDGKDLRKHT--SFT-DYYPR-------HLNTDGRRILFS-KGGSIYIFNPDTEKIEKIEI 282 (1045)
T ss_dssp -EEEEEECTTSSCEEEEEETTSCSCEECC--CCC-SSCEE-------EEEESSSCEEEE-ETTEEEEECTTTCCEEECCC
T ss_pred -EEEEEEeccCceEEEEEeCCCCcceEec--CCC-Cccee-------eEcCCCCEEEEE-eCCEEEEecCCceEeeeecc
Confidence 6777888889999998653 2222222 111 23333 499999988887 58888888741
Q ss_pred -------------CCceEEEEe-CC--EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCC-CeEEEEEeCCccEEEE
Q 001349 936 -------------KYPKCLALV-QG--KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKAN-PVHALQVHNGLVYTAS 998 (1094)
Q Consensus 936 -------------~~v~~l~~s-~~--~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~-~V~sl~fs~~~~~las 998 (1094)
..+.++.|+ ++ .+++++ ++.|.+|+..++... .+..|.. .+..+.|+ ++..++.
T Consensus 283 ~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~s-dg~~l~~ 353 (1045)
T 1k32_A 283 GDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-------KVPEPLRIRYVRRGGD-TKVAFIH 353 (1045)
T ss_dssp CCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-------ECSCCSCEEEEEECSS-SEEEEEE
T ss_pred CcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-------EccCCCcceEEeeeEc-CCCeEEE
Confidence 147889998 63 366666 899999999887653 3445666 78999999 9998888
Q ss_pred EECCCCEEE-EEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCC
Q 001349 999 TSLDGAAVK-MWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDN 1075 (1094)
Q Consensus 999 ~s~Dg~~I~-iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spd 1075 (1094)
++.++ .+. +||+.++.......+...+..++|+|| ++++++.++.|++||+.+++....+ .+|.+.+.+++||||
T Consensus 354 ~s~~~-~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~-~~~~~~v~~~~~SpD 431 (1045)
T 1k32_A 354 GTREG-DFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE-RSREAMITDFTISDN 431 (1045)
T ss_dssp EETTE-EEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSSCCCCEEECTT
T ss_pred EECCC-ceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEec-cCCCCCccceEECCC
Confidence 88764 888 999988765544345678999999999 8999999999999999999887776 478889999999999
Q ss_pred CCEEEEEeCCC----------cEEEEeCC
Q 001349 1076 EEFLVIGTSDG----------RIQAWGLS 1094 (1094)
Q Consensus 1076 g~~L~sgs~DG----------~I~iWdls 1094 (1094)
|++|++++.++ .|++||+.
T Consensus 432 G~~la~~~~~~~~~~~~~~~~~i~l~d~~ 460 (1045)
T 1k32_A 432 SRFIAYGFPLKHGETDGYVMQAIHVYDME 460 (1045)
T ss_dssp SCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred CCeEEEEecCccccccCCCCCeEEEEECC
Confidence 99999887654 89999973
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-17 Score=209.90 Aligned_cols=296 Identities=10% Similarity=0.067 Sum_probs=201.2
Q ss_pred CcEEEEeeCCCCeEEEeCCcce---eecccCC-----------------CcEEEEEEeCC-EEEEEECCCeEEEEecCCC
Q 001349 785 MVKVLSNGHDSSADFWNHRELV---HVDSSEN-----------------GKVLSIACFRD-KIFSGHSDGTIKVWTGRGS 843 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~~~~---~~~~~h~-----------------~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~ 843 (1094)
+..+++++.++ | +||..+.. ..+..|. ..|.+++|+|| .++.+ .|++|++||+.++
T Consensus 35 g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~ 111 (706)
T 2z3z_A 35 GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLF-TQGGLVGFDMLAR 111 (706)
T ss_dssp TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEEEE-ETTEEEEEETTTT
T ss_pred CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEEEE-ECCEEEEEECCCC
Confidence 67778888888 8 99987322 3333332 56999999998 44444 4699999999988
Q ss_pred cceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-----CceEEEEecccCccc-eeee------ecCceE
Q 001349 844 ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGN-----EEIHCVQVHDIKDQI-QNLA------VSNSIL 911 (1094)
Q Consensus 844 ~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~-----~~~~~~~~~~~~~~V-~~v~------~~~~~~ 911 (1094)
.. ..+..|...+.+++|||||++|+++ .|++|++||+.+ ++...+..... ..+ ..+. -....+
T Consensus 112 --~~-~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~-~~~~~g~~~~~ee~~~~~~~ 186 (706)
T 2z3z_A 112 --KV-TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGT-ETLVYGQAVHQREFGIEKGT 186 (706)
T ss_dssp --EE-EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCB-TTEEESSCCGGGCTTCCCSE
T ss_pred --ce-EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCC-CCeEcccchhhhhcCCCceE
Confidence 33 3445677789999999999999985 679999999998 75333222111 111 0000 001234
Q ss_pred EEeeCCCeEEEEEe---------------------------------CCeEEEEcCC--------------CCceEEEEe
Q 001349 912 CFIPQGAGIKVHLR---------------------------------NGKTKLLNSS--------------KYPKCLALV 944 (1094)
Q Consensus 912 ~fspdg~~l~~~~~---------------------------------~g~i~l~~~~--------------~~v~~l~~s 944 (1094)
.|+|||+.+++... +..+.+|+.. ..+.++.|+
T Consensus 187 ~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 266 (706)
T 2z3z_A 187 FWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWS 266 (706)
T ss_dssp EECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEEC
T ss_pred EECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEE
Confidence 49999999998872 3456777642 246788888
Q ss_pred C--CEEEEEEcCC-----eEEEEECCCCc-eeEEeccceeecCCCCCeEEEEEeC--CccEEEEEECCCCEEEEEECC-C
Q 001349 945 Q--GKVYCGCQDG-----AIQEIDLATGT-FATIQTGHRKLLGKANPVHALQVHN--GLVYTASTSLDGAAVKMWSTS-N 1013 (1094)
Q Consensus 945 ~--~~l~sgs~Dg-----~I~iwDl~~~~-~~~~~~~~~~~~~h~~~V~sl~fs~--~~~~las~s~Dg~~I~iwd~~-~ 1013 (1094)
+ ..+++++.|+ .|.+||+.+++ ....... ........+..+.|+| ++.++++++.|| .++||++. +
T Consensus 267 pdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~--~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g-~~~l~~~~~~ 343 (706)
T 2z3z_A 267 PDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVE--TDKHYVEPLHPLTFLPGSNNQFIWQSRRDG-WNHLYLYDTT 343 (706)
T ss_dssp TTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEE--ECSSCCCCCSCCEECTTCSSEEEEEECTTS-SCEEEEEETT
T ss_pred CCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEc--cCCCeECccCCceeecCCCCEEEEEEccCC-ccEEEEEECC
Confidence 5 3588877776 89999999984 3322110 0011112346789999 999988887776 78898876 5
Q ss_pred CeEEEEec-CCCCEEE-EEEeCC--EEEE-EEcCC----eEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeC
Q 001349 1014 YNMVGSLP-TLSEVRA-MVVSSE--LVYL-GCKGG----TVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTS 1084 (1094)
Q Consensus 1014 ~~~~~~~~-~~~~v~~-l~~spd--~l~s-gs~dg----~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~ 1084 (1094)
+..+..+. +...+.. ++|+|| .++. ++.++ .|+.||..+++ ...+. |...+.+++|||||++++.++.
T Consensus 344 ~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~--~~~~~~~~~~spdg~~l~~~~~ 420 (706)
T 2z3z_A 344 GRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT--PESGMHRTQLSPDGSAIIDIFQ 420 (706)
T ss_dssp SCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC--CSSSEEEEEECTTSSEEEEEEE
T ss_pred CCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc--CCCceEEEEECCCCCEEEEEec
Confidence 66667776 4556766 799998 4544 44554 77888888776 44452 6667999999999998887654
Q ss_pred C----CcEEEEeCC
Q 001349 1085 D----GRIQAWGLS 1094 (1094)
Q Consensus 1085 D----G~I~iWdls 1094 (1094)
+ +.|++||+.
T Consensus 421 ~~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 421 SPTVPRKVTVTNIG 434 (706)
T ss_dssp CSSCSCEEEEEESS
T ss_pred CCCCCcEEEEEECC
Confidence 4 569999863
|
| >1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-19 Score=162.18 Aligned_cols=78 Identities=23% Similarity=0.375 Sum_probs=70.5
Q ss_pred CCCCCCCCceeccCccccccCcEEcCCc-ccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHhCCC
Q 001349 155 IGKHTPPKDFVCPITTHIFDDPVTLETG-QTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPG 233 (1094)
Q Consensus 155 ~~~~~~~~~~~CpIc~~~~~dPv~~~cG-htfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~~~~ 233 (1094)
.....+|++|.||||+++|+|||+++|| |+|||.||++||.. +.+||.|++++....++ ||..|+++|+.|+.+++.
T Consensus 14 ~~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~-pn~~Lk~~I~~~~~~~~~ 91 (98)
T 1wgm_A 14 ETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIR-PNTELKEKIQRWLAERKQ 91 (98)
T ss_dssp CCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSE-ECHHHHHHHHHHHHHSTT
T ss_pred hhhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhce-EcHHHHHHHHHHHHHcch
Confidence 3445678899999999999999999999 99999999999986 56899999999999997 999999999999998754
Q ss_pred C
Q 001349 234 G 234 (1094)
Q Consensus 234 ~ 234 (1094)
.
T Consensus 92 ~ 92 (98)
T 1wgm_A 92 Q 92 (98)
T ss_dssp C
T ss_pred h
Confidence 3
|
| >2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B | Back alignment and structure |
|---|
Probab=99.76 E-value=4.6e-19 Score=161.95 Aligned_cols=75 Identities=25% Similarity=0.467 Sum_probs=69.0
Q ss_pred CCCCCCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHhCC
Q 001349 156 GKHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNP 232 (1094)
Q Consensus 156 ~~~~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~~~ 232 (1094)
....+|++|.||||+++|+|||+++|||+|||.||..||.. +.+||.|++++....++ ||..|+++|+.|+..+.
T Consensus 22 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~-pn~~Lk~~I~~~~~~~~ 96 (100)
T 2kre_A 22 DYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLE-PVPELKEQIQAWMREKQ 96 (100)
T ss_dssp SCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSE-ECHHHHHHHHHHHHTTT
T ss_pred hhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhce-ECHHHHHHHHHHHHHhh
Confidence 34567889999999999999999999999999999999985 67899999999999997 99999999999998765
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-16 Score=209.98 Aligned_cols=290 Identities=12% Similarity=0.047 Sum_probs=217.1
Q ss_pred ccccCcEEEEeeC------------CCCeEEEeCC--cceeecccCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcc
Q 001349 781 LAFEMVKVLSNGH------------DSSADFWNHR--ELVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSIL 845 (1094)
Q Consensus 781 ~~~d~~~l~s~s~------------dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~ 845 (1094)
+++ | .+++++. +...++|... .....+.+|.+.+.++.|+++ ++++++.||+++||++....
T Consensus 159 ~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g- 235 (1045)
T 1k32_A 159 FAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDG- 235 (1045)
T ss_dssp EET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTS-
T ss_pred eCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCC-
Confidence 455 6 7777653 3456777543 233444789999999999998 66677888999999865321
Q ss_pred eeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecc---------cCccceeeeecCceEEEe-e
Q 001349 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHD---------IKDQIQNLAVSNSILCFI-P 915 (1094)
Q Consensus 846 ~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~---------~~~~V~~v~~~~~~~~fs-p 915 (1094)
.....+..|. .+...+|+|||++|+.++ ++.|.+||+..+.+..+.... +...+.++. |+ |
T Consensus 236 ~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~-------~S~p 306 (1045)
T 1k32_A 236 KDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAED-------FSPL 306 (1045)
T ss_dssp CSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEE-------EEEC
T ss_pred CcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCceEeeeeccCcccccccccccccccceee-------ecCC
Confidence 2345555565 467789999999998874 899999999654333111100 112355555 99 9
Q ss_pred CCCeEEEEEeCCeEEEEcCC-----------C-CceEEEEeCC-EEEEEEcCCeEE-EEECCCCceeEEeccceeecCCC
Q 001349 916 QGAGIKVHLRNGKTKLLNSS-----------K-YPKCLALVQG-KVYCGCQDGAIQ-EIDLATGTFATIQTGHRKLLGKA 981 (1094)
Q Consensus 916 dg~~l~~~~~~g~i~l~~~~-----------~-~v~~l~~s~~-~l~sgs~Dg~I~-iwDl~~~~~~~~~~~~~~~~~h~ 981 (1094)
||+.+++.. ++.+.+|+.. . .+..+.|+++ .++.++.++.+. +||+.++... .+.+|.
T Consensus 307 dG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~-------~l~~~~ 378 (1045)
T 1k32_A 307 DGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-------KFEENL 378 (1045)
T ss_dssp GGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-------ECCCCC
T ss_pred CCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEcCCCeEEEEECCCceEEEEECCCCCce-------EecCCc
Confidence 999988877 7777777642 2 4556666632 478888888888 9999887653 233677
Q ss_pred CCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcC----------CeEEEE
Q 001349 982 NPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKG----------GTVEIW 1048 (1094)
Q Consensus 982 ~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~d----------g~I~vw 1048 (1094)
..+..++|+|++.++++++.++ .|++||+.+++...... |...+..++|+|| ++++++.+ +.|++|
T Consensus 379 ~~~~~~~~SpDG~~la~~~~~~-~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~ 457 (1045)
T 1k32_A 379 GNVFAMGVDRNGKFAVVANDRF-EIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVY 457 (1045)
T ss_dssp CSEEEEEECTTSSEEEEEETTS-EEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEE
T ss_pred cceeeeEECCCCCEEEEECCCC-eEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEE
Confidence 8899999999999999998886 99999999998877774 6778899999999 67776654 489999
Q ss_pred ECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1049 DQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1049 d~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
|+.+++ +..+ ..|...+..++|+|||++|++++.++...+|+.
T Consensus 458 d~~~g~-~~~l-~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 458 DMEGRK-IFAA-TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp ETTTTE-EEEC-SCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred ECCCCc-EEEe-eCCCcccCCceEcCCCCEEEEEecccCCcCcch
Confidence 999987 5566 467788999999999999999999888888864
|
| >2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.2e-19 Score=157.53 Aligned_cols=74 Identities=26% Similarity=0.468 Sum_probs=67.8
Q ss_pred CCCCCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHhCC
Q 001349 157 KHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNP 232 (1094)
Q Consensus 157 ~~~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~~~ 232 (1094)
...+|++|.||||+++|+|||+++|||+||+.||+.||.. +.+||.|++++....++ ||..|+++|+.|+..+.
T Consensus 8 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~-pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 8 YSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLE-PVPELKEQIQAWMREKQ 81 (85)
T ss_dssp CTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCE-ECHHHHHHHHHHHHHHH
T ss_pred hhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcc-hHHHHHHHHHHHHHHhh
Confidence 3467889999999999999999999999999999999996 56899999999998997 99999999999997653
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.7e-17 Score=204.62 Aligned_cols=261 Identities=7% Similarity=0.018 Sum_probs=194.3
Q ss_pred CCcEEEEEEeCC--EEEEEEC-CC-----eEEEEecCCCcceeEEEecccC------------------------CCeEE
Q 001349 813 NGKVLSIACFRD--KIFSGHS-DG-----TIKVWTGRGSILHLIQQIREHT------------------------KAVTG 860 (1094)
Q Consensus 813 ~~~V~~l~fspd--~LaSgs~-Dg-----~I~vWd~~t~~~~~~~~l~~H~------------------------~~V~s 860 (1094)
...|.+++|+|| +|++++. || +|++||+.++ +....+..|. ..|.+
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSG--QTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTC--CEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCC--ceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 567999999997 8999988 88 9999999998 4444444433 23889
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCC---ceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCC
Q 001349 861 LAILQSGEMLYSGSLDKTARVWSIGNE---EIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKY 937 (1094)
Q Consensus 861 v~fspdg~~LaSgs~DgtI~vWdi~~~---~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~ 937 (1094)
++|||||++|++++. ++|++||+.++ .... ...+...+..+. |+|||+.++... ++.+.+|+..+.
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~--l~~~~~~~~~~~-------~SPDG~~la~~~-~~~i~~~d~~~g 182 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQ--LTHGEGFATDAK-------LSPKGGFVSFIR-GRNLWVIDLASG 182 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCCB--CCCSSSCEEEEE-------ECTTSSEEEEEE-TTEEEEEETTTT
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEEE--cccCCccccccc-------CCCCCCEEEEEe-CCcEEEEecCCC
Confidence 999999999999987 89999999987 4332 223345566666 999999988776 568888875321
Q ss_pred ----------------------------ceEEEEeC--CEEEEEEcCC--------------------------------
Q 001349 938 ----------------------------PKCLALVQ--GKVYCGCQDG-------------------------------- 955 (1094)
Q Consensus 938 ----------------------------v~~l~~s~--~~l~sgs~Dg-------------------------------- 955 (1094)
+..+.|++ ..|++++.|+
T Consensus 183 ~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~ 262 (741)
T 2ecf_A 183 RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ 262 (741)
T ss_dssp EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence 36688886 3488877765
Q ss_pred -eEEEEECCC-CceeEEeccceeecCCCCCeEEEEEeCCccEEEEEEC----CCCEEEEEECCCCeEEEEecCC--C---
Q 001349 956 -AIQEIDLAT-GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSL----DGAAVKMWSTSNYNMVGSLPTL--S--- 1024 (1094)
Q Consensus 956 -~I~iwDl~~-~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~----Dg~~I~iwd~~~~~~~~~~~~~--~--- 1024 (1094)
.|.+||+.+ ++....... ..|...+..++| ||+.+++..+. +...|.+||+.+++....+... .
T Consensus 263 ~~l~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 337 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDLG----KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVP 337 (741)
T ss_dssp EEEEEECSSTTCCCEEECCC----SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCC
T ss_pred eEEEEEECCCCCceEEecCC----CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCC
Confidence 889999988 775432111 146678999999 99998887654 1248999999999877766532 2
Q ss_pred CEEEEEEeCC--EEEEEEcCCeEEEEECC-CCcEEEEecccCCcceEEE-EEcCCCCEEEE-EeCCC--cEEEEeC
Q 001349 1025 EVRAMVVSSE--LVYLGCKGGTVEIWDQK-RQIRIETLQTGTSGKVQCM-ALDDNEEFLVI-GTSDG--RIQAWGL 1093 (1094)
Q Consensus 1025 ~v~~l~~spd--~l~sgs~dg~I~vwd~~-t~~~~~~l~~~h~~~I~~l-~~Spdg~~L~s-gs~DG--~I~iWdl 1093 (1094)
.+..++|+|| ++++++.||.++||.+. +++ ...+ ..|...|..+ .|+|||+.|+. ++.++ .+++|++
T Consensus 338 ~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l-~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~ 411 (741)
T 2ecf_A 338 LHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAAL-THGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAV 411 (741)
T ss_dssp CCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEES-CCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEE
T ss_pred cCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeee-eecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEE
Confidence 3468899998 78888889988888765 344 6666 4667778887 59999997754 55555 8999975
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-16 Score=175.14 Aligned_cols=222 Identities=13% Similarity=0.083 Sum_probs=158.2
Q ss_pred EEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-CceEEEEecccCccceeeee
Q 001349 828 SGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGN-EEIHCVQVHDIKDQIQNLAV 906 (1094)
Q Consensus 828 Sgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~-~~~~~~~~~~~~~~V~~v~~ 906 (1094)
+++.|++|++||+.++ .. ..+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++...+........+.++.
T Consensus 17 ~~~~~~~i~~~d~~~~--~~-~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~- 91 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTR--KM-RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHG- 91 (297)
T ss_dssp -CCCCEEEEEEETTTT--EE-EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCE-
T ss_pred CCCcceeEEEEeCCCC--ce-eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceE-
Confidence 3467899999999988 33 34556899999999999999999987 78999999998 7644333222234555555
Q ss_pred cCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEE
Q 001349 907 SNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHA 986 (1094)
Q Consensus 907 ~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~s 986 (1094)
|+|+|+.+++...+. .....|..||..++... .+..+ ..+..
T Consensus 92 ------~spdg~~l~~~~~~~------------------------~~~~~l~~~~~~~~~~~-------~~~~~-~~~~~ 133 (297)
T 2ojh_A 92 ------ISPDGALYAISDKVE------------------------FGKSAIYLLPSTGGTPR-------LMTKN-LPSYW 133 (297)
T ss_dssp ------ECTTSSEEEEEECTT------------------------TSSCEEEEEETTCCCCE-------ECCSS-SSEEE
T ss_pred ------ECCCCCEEEEEEeCC------------------------CCcceEEEEECCCCceE-------EeecC-CCccc
Confidence 899998643332110 01234555565555432 22222 34889
Q ss_pred EEEeCCccEEE-EEECCCCEEEEEEC--CCCeEEEEecCCCCEEEEEEeCC--EEEEEE-cCCeEEEEECC-CCcEEEEe
Q 001349 987 LQVHNGLVYTA-STSLDGAAVKMWST--SNYNMVGSLPTLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQK-RQIRIETL 1059 (1094)
Q Consensus 987 l~fs~~~~~la-s~s~Dg~~I~iwd~--~~~~~~~~~~~~~~v~~l~~spd--~l~sgs-~dg~I~vwd~~-t~~~~~~l 1059 (1094)
+.|+|++.+++ +++.++ .+++|++ .++.......+...+.++.|+|+ .++.++ .++.+++|++. .+..+..+
T Consensus 134 ~~~spdg~~l~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 212 (297)
T 2ojh_A 134 HGWSPDGKSFTYCGIRDQ-VFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI 212 (297)
T ss_dssp EEECTTSSEEEEEEEETT-EEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC
T ss_pred eEECCCCCEEEEEECCCC-ceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE
Confidence 99999998777 566665 8999985 44544443446788999999998 566555 58999999876 45556666
Q ss_pred cccCCcceEEEEEcCCCCEEEEEeCC-----------CcEEEEeCC
Q 001349 1060 QTGTSGKVQCMALDDNEEFLVIGTSD-----------GRIQAWGLS 1094 (1094)
Q Consensus 1060 ~~~h~~~I~~l~~Spdg~~L~sgs~D-----------G~I~iWdls 1094 (1094)
..|...+..++|+|||++|++++.+ +.|++||+.
T Consensus 213 -~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~ 257 (297)
T 2ojh_A 213 -TDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMD 257 (297)
T ss_dssp -CCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETT
T ss_pred -ecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecC
Confidence 4677789999999999999988876 569999873
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-16 Score=194.88 Aligned_cols=275 Identities=12% Similarity=0.066 Sum_probs=189.5
Q ss_pred HHHHHHHhhhccccccccccCcEEEEeeC-CCCeEEEeCCc-ceeecccCC-CcEEEEEEeCC-EEEEEEC---CCeEEE
Q 001349 765 MKDIMKGLRELRKYSPLAFEMVKVLSNGH-DSSADFWNHRE-LVHVDSSEN-GKVLSIACFRD-KIFSGHS---DGTIKV 837 (1094)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~d~~~l~s~s~-dg~I~vWd~~~-~~~~~~~h~-~~V~~l~fspd-~LaSgs~---Dg~I~v 837 (1094)
++...+.+...+....+++||++|++++. ||+++||++.. ....+..|. ..+..++|+|| ++++++. +...++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l 92 (582)
T 3o4h_A 13 VRDVERLIAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHAL 92 (582)
T ss_dssp HHHHHHHHHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEE
T ss_pred HHHHHHHhccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCeEEEEeccCCCCcceEE
Confidence 33443444445667788999999999887 99999999862 223344455 68999999999 6666664 455666
Q ss_pred EecCC--CcceeEEEecccCCCeEEEEEecCCC--EEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEE
Q 001349 838 WTGRG--SILHLIQQIREHTKAVTGLAILQSGE--MLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCF 913 (1094)
Q Consensus 838 Wd~~t--~~~~~~~~l~~H~~~V~sv~fspdg~--~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~f 913 (1094)
|.+.. .. ... .+..+. .+...+|+|||+ .+++++.|+ +.+||+.+++...+.... . .++. |
T Consensus 93 ~~~~~~~~g-~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~--~--~~~~-------~ 157 (582)
T 3o4h_A 93 FKVNTSRPG-EEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLP--G--FGFV-------S 157 (582)
T ss_dssp EEEETTSTT-CCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEES--S--CEEE-------E
T ss_pred EEEeccCCC-ccc-cccCCC-CceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCC--C--ceEE-------E
Confidence 65433 21 122 333222 344668888875 444455554 559999998654444322 1 3444 9
Q ss_pred eeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCc
Q 001349 914 IPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL 993 (1094)
Q Consensus 914 spdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~ 993 (1094)
+|||+.++....++ +..+.|++||+.+++.. .+.+|...+..++|+||+
T Consensus 158 spDG~~la~~~~~~------------------------~~~~~i~~~d~~~g~~~-------~l~~~~~~~~~~~~SpDG 206 (582)
T 3o4h_A 158 DIRGDLIAGLGFFG------------------------GGRVSLFTSNLSSGGLR-------VFDSGEGSFSSASISPGM 206 (582)
T ss_dssp EEETTEEEEEEEEE------------------------TTEEEEEEEETTTCCCE-------EECCSSCEEEEEEECTTS
T ss_pred CCCCCEEEEEEEcC------------------------CCCeEEEEEcCCCCCce-------EeecCCCccccceECCCC
Confidence 99999754332221 01167999999988763 455677789999999999
Q ss_pred cEEEEEECCC-CEEEEEECCCCeEEEEec-CCCCEEEEE--------EeCC--EEEEEEcCCeEEEEECCCCcEEEEecc
Q 001349 994 VYTASTSLDG-AAVKMWSTSNYNMVGSLP-TLSEVRAMV--------VSSE--LVYLGCKGGTVEIWDQKRQIRIETLQT 1061 (1094)
Q Consensus 994 ~~las~s~Dg-~~I~iwd~~~~~~~~~~~-~~~~v~~l~--------~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~ 1061 (1094)
.+++++..++ ..|++||+.+++.. .+. +...+..++ |+|| .+++++.+|++++|++ ++...
T Consensus 207 ~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---- 279 (582)
T 3o4h_A 207 KVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---- 279 (582)
T ss_dssp CEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC----
T ss_pred CEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec----
Confidence 9999666553 28999999998877 544 444555566 9999 7888999999999999 66544
Q ss_pred cCCcceEEEEEcCCCCEEEEEeCCCc---EEEEeC
Q 001349 1062 GTSGKVQCMALDDNEEFLVIGTSDGR---IQAWGL 1093 (1094)
Q Consensus 1062 ~h~~~I~~l~~Spdg~~L~sgs~DG~---I~iWdl 1093 (1094)
.+.+.|.+++|+ ||+++++++.+.+ |.+||.
T Consensus 280 ~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 280 APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcC
Confidence 234678999999 9999999888754 666664
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-15 Score=171.82 Aligned_cols=241 Identities=10% Similarity=0.097 Sum_probs=172.9
Q ss_pred CCcEEEEEEeCC--EEEEEEC-------CCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEE-EEeCCCcEEEE
Q 001349 813 NGKVLSIACFRD--KIFSGHS-------DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLY-SGSLDKTARVW 882 (1094)
Q Consensus 813 ~~~V~~l~fspd--~LaSgs~-------Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~La-Sgs~DgtI~vW 882 (1094)
...+..++|+|+ ++++++. ++.|.+||..++ +.+..+.. ...+..++|+|+|++++ +...++.|.+|
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~--~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL--EVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC--CEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC--eEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence 456789999996 6666663 578999999998 56666653 44578899999999555 45557999999
Q ss_pred ECCCCceEEEEecccCcc-ceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEE--cCCeEEE
Q 001349 883 SIGNEEIHCVQVHDIKDQ-IQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGC--QDGAIQE 959 (1094)
Q Consensus 883 di~~~~~~~~~~~~~~~~-V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs--~Dg~I~i 959 (1094)
|..+++............ -..-...+..+.|+|+|+. +++++ .++.|.+
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~----------------------------l~~~~~~~~~~i~~ 168 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNT----------------------------VYISGIGKESVIWV 168 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTE----------------------------EEEEEESSSCEEEE
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCE----------------------------EEEEecCCCceEEE
Confidence 999986432222111110 0000000112337777775 33333 4788999
Q ss_pred EECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecC-----CCCEEEEEEeCC
Q 001349 960 IDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT-----LSEVRAMVVSSE 1034 (1094)
Q Consensus 960 wDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~-----~~~v~~l~~spd 1034 (1094)
||+.+++.... +..+...+..++|++++.+++.++.++ .|.+||..+++....+.. ...+..++|+|+
T Consensus 169 ~d~~~~~~~~~------~~~~~~~~~~~~~s~dg~~l~~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 241 (353)
T 3vgz_A 169 VDGGNIKLKTA------IQNTGKMSTGLALDSEGKRLYTTNADG-ELITIDTADNKILSRKKLLDDGKEHFFINISLDTA 241 (353)
T ss_dssp EETTTTEEEEE------ECCCCTTCCCCEEETTTTEEEEECTTS-EEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETT
T ss_pred EcCCCCceEEE------ecCCCCccceEEECCCCCEEEEEcCCC-eEEEEECCCCeEEEEEEcCCCCCCcccceEEECCC
Confidence 99999887633 333445578899999999888888775 999999999998887763 345788999988
Q ss_pred --EEEEEEc-CCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEe-CCCcEEEEeCC
Q 001349 1035 --LVYLGCK-GGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGT-SDGRIQAWGLS 1094 (1094)
Q Consensus 1035 --~l~sgs~-dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs-~DG~I~iWdls 1094 (1094)
++++++. ++.|.+||..+++.+..+..++ ...++|+|||+++++++ .++.|.+||+.
T Consensus 242 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 302 (353)
T 3vgz_A 242 RQRAFITDSKAAEVLVVDTRNGNILAKVAAPE---SLAVLFNPARNEAYVTHRQAGKVSVIDAK 302 (353)
T ss_dssp TTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC---CceEEECCCCCEEEEEECCCCeEEEEECC
Confidence 5666654 5999999999999988885333 26799999999666555 68999999973
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.9e-16 Score=174.03 Aligned_cols=223 Identities=9% Similarity=0.059 Sum_probs=161.4
Q ss_pred EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCceEEEEecccCcccee
Q 001349 825 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSL-DKTARVWSIGNEEIHCVQVHDIKDQIQN 903 (1094)
Q Consensus 825 ~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~-DgtI~vWdi~~~~~~~~~~~~~~~~V~~ 903 (1094)
.+++++.+++|++||..++ +.+..+..+...+ .++|+|+|+++++++. ++.|.+||..+++...........+..+
T Consensus 12 ~~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 88 (331)
T 3u4y_A 12 GIVVEQHLRRISFFSTDTL--EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMAD 88 (331)
T ss_dssp EEEEEGGGTEEEEEETTTC--CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCC
T ss_pred EEEEecCCCeEEEEeCccc--ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccc
Confidence 6888889999999999998 5666666666677 9999999997776665 8999999999886422222222333322
Q ss_pred eeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcC-C--eEEEEECCCCceeEEeccceeecCC
Q 001349 904 LAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQD-G--AIQEIDLATGTFATIQTGHRKLLGK 980 (1094)
Q Consensus 904 v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~D-g--~I~iwDl~~~~~~~~~~~~~~~~~h 980 (1094)
+. |+|+|+.+ +++..+ + .|.+||+.+++....+. +
T Consensus 89 ~~-------~s~dg~~l----------------------------~~~~~~~~~~~i~v~d~~~~~~~~~~~-------~ 126 (331)
T 3u4y_A 89 VD-------ITPDDQFA----------------------------VTVTGLNHPFNMQSYSFLKNKFISTIP-------I 126 (331)
T ss_dssp EE-------ECTTSSEE----------------------------EECCCSSSSCEEEEEETTTTEEEEEEE-------C
T ss_pred eE-------ECCCCCEE----------------------------EEecCCCCcccEEEEECCCCCeEEEEE-------C
Confidence 44 88888863 333333 2 89999999988764322 2
Q ss_pred CCCeEEEEEeCCccEEEEEECCCCE-EEEEECCCCeEE-----EEecCCCCEEEEEEeCC--EEEEE-EcCCeEEEEECC
Q 001349 981 ANPVHALQVHNGLVYTASTSLDGAA-VKMWSTSNYNMV-----GSLPTLSEVRAMVVSSE--LVYLG-CKGGTVEIWDQK 1051 (1094)
Q Consensus 981 ~~~V~sl~fs~~~~~las~s~Dg~~-I~iwd~~~~~~~-----~~~~~~~~v~~l~~spd--~l~sg-s~dg~I~vwd~~ 1051 (1094)
......++|+|++.+++.++.+++. |.+|++.....+ ..+.....+..++|+|+ +++++ ..++.|++||+.
T Consensus 127 ~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 206 (331)
T 3u4y_A 127 PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQ 206 (331)
T ss_dssp CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECC
Confidence 3456899999998755544444336 999998753322 23345667899999998 45554 468999999999
Q ss_pred CCcE---EEEecccCCcceEEEEEcCCCCEEEEEe-CCCcEEEEeCC
Q 001349 1052 RQIR---IETLQTGTSGKVQCMALDDNEEFLVIGT-SDGRIQAWGLS 1094 (1094)
Q Consensus 1052 t~~~---~~~l~~~h~~~I~~l~~Spdg~~L~sgs-~DG~I~iWdls 1094 (1094)
+++. +..+. +...+..++|+|||+++++++ .++.|.+||+.
T Consensus 207 ~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~ 251 (331)
T 3u4y_A 207 NPENITLLNAVG--TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQL 251 (331)
T ss_dssp STTSCEEEEEEE--CSSCCCCEEECTTSSEEEEECSSEEEEEEEETT
T ss_pred CCcccceeeecc--CCCCCceEEECCCCCEEEEEEcCCCEEEEEECC
Confidence 9988 77774 345788999999999776655 57889999963
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-15 Score=172.69 Aligned_cols=262 Identities=9% Similarity=0.106 Sum_probs=172.2
Q ss_pred ccccccccCcEEEEeeCC-CCeEEEeCC----cc--eeecccCCCcEEEEEEeCC--EEEEEE-CCCeEEEEecCCCc-c
Q 001349 777 KYSPLAFEMVKVLSNGHD-SSADFWNHR----EL--VHVDSSENGKVLSIACFRD--KIFSGH-SDGTIKVWTGRGSI-L 845 (1094)
Q Consensus 777 ~~~~~~~d~~~l~s~s~d-g~I~vWd~~----~~--~~~~~~h~~~V~~l~fspd--~LaSgs-~Dg~I~vWd~~t~~-~ 845 (1094)
....+++++.++++++.+ +.|.+|++. .. ......+ +.+.+++|+|+ ++++++ .++.|.+||+.++. .
T Consensus 41 ~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~ 119 (343)
T 1ri6_A 41 QPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV 119 (343)
T ss_dssp CCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEE
T ss_pred ceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccc
Confidence 345677889988888887 999999986 21 1222333 37899999997 565555 58999999994321 1
Q ss_pred eeEEEecccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCC-CceEEEE----ecccCccceeeeecCceEEEeeCCCe
Q 001349 846 HLIQQIREHTKAVTGLAILQSGEMLYSGS-LDKTARVWSIGN-EEIHCVQ----VHDIKDQIQNLAVSNSILCFIPQGAG 919 (1094)
Q Consensus 846 ~~~~~l~~H~~~V~sv~fspdg~~LaSgs-~DgtI~vWdi~~-~~~~~~~----~~~~~~~V~~v~~~~~~~~fspdg~~ 919 (1094)
..+..+..+ ..+.+++|+|+|+++++++ .|+.|++||+.+ ++..... .......+..+. |+|+|+.
T Consensus 120 ~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~pdg~~ 191 (343)
T 1ri6_A 120 GVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMV-------FHPNEQY 191 (343)
T ss_dssp EEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEE-------ECTTSSE
T ss_pred cccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEE-------ECCCCCE
Confidence 445555443 4589999999999888887 899999999987 6543222 111122333343 7777765
Q ss_pred EEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCC--CceeEEeccceeec-C--CCCCeEEEEEeCCcc
Q 001349 920 IKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT--GTFATIQTGHRKLL-G--KANPVHALQVHNGLV 994 (1094)
Q Consensus 920 l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~--~~~~~~~~~~~~~~-~--h~~~V~sl~fs~~~~ 994 (1094)
+ ++++..++.|.+||+.. +........ ..+. + ....+..++|+|++.
T Consensus 192 l---------------------------~~~~~~~~~i~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~i~~s~dg~ 243 (343)
T 1ri6_A 192 A---------------------------YCVNELNSSVDVWELKDPHGNIECVQTL-DMMPENFSDTRWAADIHITPDGR 243 (343)
T ss_dssp E---------------------------EEEETTTTEEEEEESSCTTSCCEEEEEE-ECSCTTCCSCCCEEEEEECTTSS
T ss_pred E---------------------------EEEeCCCCEEEEEEecCCCCcEEEEeec-cccCccccccCCccceEECCCCC
Confidence 2 33444788999999953 433211110 1111 1 134677899999998
Q ss_pred EEEEEECCCCEEEEEECC----CCeEEEEecCCCCEEEEEEeCC--EEEEEE-cCCeEEEE--ECCCCc--EEEEecccC
Q 001349 995 YTASTSLDGAAVKMWSTS----NYNMVGSLPTLSEVRAMVVSSE--LVYLGC-KGGTVEIW--DQKRQI--RIETLQTGT 1063 (1094)
Q Consensus 995 ~las~s~Dg~~I~iwd~~----~~~~~~~~~~~~~v~~l~~spd--~l~sgs-~dg~I~vw--d~~t~~--~~~~l~~~h 1063 (1094)
+++.+...++.|.+||+. +.+.+..+.....+..++|+|+ ++++++ .++.|.+| |..+++ .+..+..
T Consensus 244 ~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-- 321 (343)
T 1ri6_A 244 HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-- 321 (343)
T ss_dssp EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC--
T ss_pred EEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc--
Confidence 776555433599999998 2345555655555889999998 677776 68999999 555664 3444432
Q ss_pred CcceEEEEEcCCCC
Q 001349 1064 SGKVQCMALDDNEE 1077 (1094)
Q Consensus 1064 ~~~I~~l~~Spdg~ 1077 (1094)
.....+++|.++.+
T Consensus 322 g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 322 GQGPMWVVVNAHEG 335 (343)
T ss_dssp SSSCCEEEEEEEC-
T ss_pred CCCCeeEEEEcccC
Confidence 24567888887654
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.73 E-value=5.4e-15 Score=169.36 Aligned_cols=278 Identities=10% Similarity=0.117 Sum_probs=178.0
Q ss_pred CcEEEEee----CCCCeEEEeCC----cceeecccCCCcEEEEEEeCC--EEEEEECC----CeEEEEecCC--CcceeE
Q 001349 785 MVKVLSNG----HDSSADFWNHR----ELVHVDSSENGKVLSIACFRD--KIFSGHSD----GTIKVWTGRG--SILHLI 848 (1094)
Q Consensus 785 ~~~l~s~s----~dg~I~vWd~~----~~~~~~~~h~~~V~~l~fspd--~LaSgs~D----g~I~vWd~~t--~~~~~~ 848 (1094)
..+++.|+ .++.|.+|.+. ........|...+..++|+|| +|++++.+ |.|.+|++.. +....+
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 34566664 35689999774 111111126778889999997 78888876 8999998865 544555
Q ss_pred EEecccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCc-eE---EEEecccCccc--eeeeecCceEEEeeCCCeEE
Q 001349 849 QQIREHTKAVTGLAILQSGEMLYSGS-LDKTARVWSIGNEE-IH---CVQVHDIKDQI--QNLAVSNSILCFIPQGAGIK 921 (1094)
Q Consensus 849 ~~l~~H~~~V~sv~fspdg~~LaSgs-~DgtI~vWdi~~~~-~~---~~~~~~~~~~V--~~v~~~~~~~~fspdg~~l~ 921 (1094)
.....+......+++ ++++|++++ .+++|.+|++.... .. .........+. ......+..++|+|+|+.+
T Consensus 93 ~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l- 169 (361)
T 3scy_A 93 NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYL- 169 (361)
T ss_dssp EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEE-
T ss_pred eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEE-
Confidence 555556667788888 888877776 57899999997532 11 00011000000 0000000123367777643
Q ss_pred EEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCce------eEEe-ccceeecCCCCCeEEEEEeCCcc
Q 001349 922 VHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTF------ATIQ-TGHRKLLGKANPVHALQVHNGLV 994 (1094)
Q Consensus 922 ~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~------~~~~-~~~~~~~~h~~~V~sl~fs~~~~ 994 (1094)
++++..++.|.+|++..... +... ........+...+..++|+|++.
T Consensus 170 --------------------------~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~ 223 (361)
T 3scy_A 170 --------------------------LADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGK 223 (361)
T ss_dssp --------------------------EEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred --------------------------EEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCC
Confidence 33344578899998875442 1110 00011223345678999999999
Q ss_pred EEEEEECCCCEEEEEECCCCeE--EEEec----CCCCEEEEEEeCC--EEEEEEc--CCeEEEEECC--CCc--EEEEec
Q 001349 995 YTASTSLDGAAVKMWSTSNYNM--VGSLP----TLSEVRAMVVSSE--LVYLGCK--GGTVEIWDQK--RQI--RIETLQ 1060 (1094)
Q Consensus 995 ~las~s~Dg~~I~iwd~~~~~~--~~~~~----~~~~v~~l~~spd--~l~sgs~--dg~I~vwd~~--t~~--~~~~l~ 1060 (1094)
+++..+..++.|.+||+.++.. +..+. +...+..++|+|| +++++.. ++.|.+|++. +++ .+..+.
T Consensus 224 ~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~ 303 (361)
T 3scy_A 224 FAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL 303 (361)
T ss_dssp EEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE
T ss_pred EEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec
Confidence 8877775445999999987754 33332 2355789999999 6766655 4899999985 454 444453
Q ss_pred ccCCcceEEEEEcCCCCEEEEEe-CCCcEEEEeC
Q 001349 1061 TGTSGKVQCMALDDNEEFLVIGT-SDGRIQAWGL 1093 (1094)
Q Consensus 1061 ~~h~~~I~~l~~Spdg~~L~sgs-~DG~I~iWdl 1093 (1094)
. ...+.+++|+|||++|++++ .++.|.+|++
T Consensus 304 -~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~ 335 (361)
T 3scy_A 304 -T-GIHPRNFIITPNGKYLLVACRDTNVIQIFER 335 (361)
T ss_dssp -C-SSCCCEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred -C-CCCCceEEECCCCCEEEEEECCCCCEEEEEE
Confidence 2 45788999999999988887 6789999754
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.72 E-value=5e-16 Score=176.00 Aligned_cols=239 Identities=9% Similarity=0.039 Sum_probs=164.0
Q ss_pred EEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccC-CCeEEEEEecCCCEEE-EEeCCCcEEEEECCCCceEEEEe
Q 001349 819 IACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHT-KAVTGLAILQSGEMLY-SGSLDKTARVWSIGNEEIHCVQV 894 (1094)
Q Consensus 819 l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~-~~V~sv~fspdg~~La-Sgs~DgtI~vWdi~~~~~~~~~~ 894 (1094)
++++++ ++++++.+++|++||..++ +.+..+..+. ..+..++|+|+|++++ +++.++.|.+||+.+++......
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASD--TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTT--EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCC--cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 445554 8899999999999999998 6666665443 2578999999998664 55578999999999886332222
Q ss_pred ccc-----CccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeE
Q 001349 895 HDI-----KDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFAT 969 (1094)
Q Consensus 895 ~~~-----~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~ 969 (1094)
... ...+.. +.|+|+|+.+++...+... ... .-+..++.|.+||+.+++...
T Consensus 83 ~~~~~~~~~~~~~~-------~~~spdg~~l~~~~~~~~~--------------~~~--~~~~~~~~i~~~d~~~~~~~~ 139 (349)
T 1jmx_B 83 LSSVPGEVGRSMYS-------FAISPDGKEVYATVNPTQR--------------LND--HYVVKPPRLEVFSTADGLEAK 139 (349)
T ss_dssp SCCSTTEEEECSSC-------EEECTTSSEEEEEEEEEEE--------------CSS--CEEECCCEEEEEEGGGGGGBC
T ss_pred cccccccccccccc-------eEECCCCCEEEEEcccccc--------------ccc--ccccCCCeEEEEECCCccccc
Confidence 111 111333 4489999876554422000 000 001224899999998854321
Q ss_pred EeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCC-------------------------
Q 001349 970 IQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLS------------------------- 1024 (1094)
Q Consensus 970 ~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~------------------------- 1024 (1094)
.. ... .+...+.+++|+|++.++ .++ + .|.+||..+++.+..+....
T Consensus 140 ~~---~~~-~~~~~~~~~~~s~dg~l~-~~~--~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (349)
T 1jmx_B 140 PV---RTF-PMPRQVYLMRAADDGSLY-VAG--P-DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFS 211 (349)
T ss_dssp CS---EEE-ECCSSCCCEEECTTSCEE-EES--S-SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEE
T ss_pred ee---eec-cCCCcccceeECCCCcEE-Ecc--C-cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEE
Confidence 11 111 223468889999999844 442 2 59999999988777665221
Q ss_pred --------------------------------------------CEEEEEEeC-C--EEEEEEcCCeEEEEECCCCcEEE
Q 001349 1025 --------------------------------------------EVRAMVVSS-E--LVYLGCKGGTVEIWDQKRQIRIE 1057 (1094)
Q Consensus 1025 --------------------------------------------~v~~l~~sp-d--~l~sgs~dg~I~vwd~~t~~~~~ 1057 (1094)
.+..++++| | +++++ ++.|++||+.+++.+.
T Consensus 212 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~ 289 (349)
T 1jmx_B 212 MLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIK 289 (349)
T ss_dssp EEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEE
T ss_pred eeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEE
Confidence 244566778 7 66666 8899999999999888
Q ss_pred EecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1058 TLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1058 ~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
.+..+ ..+.+++|+|||++|++++.++.|++||+.
T Consensus 290 ~~~~~--~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~ 324 (349)
T 1jmx_B 290 AANLD--HTYYCVAFDKKGDKLYLGGTFNDLAVFNPD 324 (349)
T ss_dssp EEECS--SCCCEEEECSSSSCEEEESBSSEEEEEETT
T ss_pred EEcCC--CCccceEECCCCCEEEEecCCCeEEEEecc
Confidence 87533 357899999999999988899999999973
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.72 E-value=6.6e-16 Score=182.13 Aligned_cols=201 Identities=11% Similarity=0.076 Sum_probs=147.3
Q ss_pred cccccccccCcEEEEeeCCCCeEEEeCCccee-----------------ecccCCCcEEEEEEeCC--EEE----EEECC
Q 001349 776 RKYSPLAFEMVKVLSNGHDSSADFWNHRELVH-----------------VDSSENGKVLSIACFRD--KIF----SGHSD 832 (1094)
Q Consensus 776 ~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~~~-----------------~~~~h~~~V~~l~fspd--~La----Sgs~D 832 (1094)
.+...++.++..+++++.++ +++|+...... ....|.+.|++++|+|+ +|+ +|+.|
T Consensus 39 ~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d 117 (434)
T 2oit_A 39 SSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYG 117 (434)
T ss_dssp CBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTE
T ss_pred ccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCC
Confidence 34556677788999999888 88887542110 11235678999999996 777 78899
Q ss_pred CeEEEEecCCC-----c----ceeEEEecccCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCceEEEEecccCccce
Q 001349 833 GTIKVWTGRGS-----I----LHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQ 902 (1094)
Q Consensus 833 g~I~vWd~~t~-----~----~~~~~~l~~H~~~V~sv~fspd-g~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~ 902 (1094)
|+|+|||+.++ . ...+..+.+|.+.|++++|+|+ +.+|++++.||+|++||++++. .......+...|.
T Consensus 118 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~-~~~~~~~~~~~v~ 196 (434)
T 2oit_A 118 SIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV-KVCATLPSTVAVT 196 (434)
T ss_dssp EEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE-EEEEEECGGGCEE
T ss_pred ceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc-ceeeccCCCCcee
Confidence 99999998653 1 1235667789999999999997 8999999999999999999874 2233344566777
Q ss_pred eeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceee-cCCC
Q 001349 903 NLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKL-LGKA 981 (1094)
Q Consensus 903 ~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~-~~h~ 981 (1094)
+++ |+|+|+. +++|+.||.|++||++ +.....+..+... ..|.
T Consensus 197 ~v~-------wspdg~~----------------------------lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~ 240 (434)
T 2oit_A 197 SVC-------WSPKGKQ----------------------------LAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHP 240 (434)
T ss_dssp EEE-------ECTTSSC----------------------------EEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSC
T ss_pred EEE-------EcCCCCE----------------------------EEEEcCCCcEEEEccC-CcccccccCCcccCCCCc
Confidence 777 8888774 7889999999999998 5544333222111 1244
Q ss_pred CCeEEEEEeCCccEEEEEE-CCC-----CEEEEEECCCC
Q 001349 982 NPVHALQVHNGLVYTASTS-LDG-----AAVKMWSTSNY 1014 (1094)
Q Consensus 982 ~~V~sl~fs~~~~~las~s-~Dg-----~~I~iwd~~~~ 1014 (1094)
..|.++.|++++.++++.+ .+| ..+++||+++.
T Consensus 241 ~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 241 VRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred eeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 5899999999988886654 332 24999999864
|
| >1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.6e-18 Score=149.10 Aligned_cols=73 Identities=47% Similarity=0.894 Sum_probs=67.9
Q ss_pred CCCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHhCC
Q 001349 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNP 232 (1094)
Q Consensus 159 ~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~~~ 232 (1094)
.++++|.||||+++|.|||+++|||+||+.||.+|+..+...||.||+.+....+. ||..|+++|+.|+++++
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~-~n~~l~~~i~~~~~~~~ 76 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLT-PNYVLKSLIALWCESNG 76 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCE-ECTTTHHHHHHHHHHSC
T ss_pred CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCc-cCHHHHHHHHHHHHHcC
Confidence 46779999999999999999999999999999999987677899999999988887 99999999999998765
|
| >2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C | Back alignment and structure |
|---|
Probab=99.71 E-value=6.3e-18 Score=169.34 Aligned_cols=75 Identities=25% Similarity=0.426 Sum_probs=68.4
Q ss_pred CCCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHhCCCC
Q 001349 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGG 234 (1094)
Q Consensus 159 ~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~~~~~ 234 (1094)
.+|++|.||||+++|.|||+++|||+||+.||..||..+..+||.|+++++...++ ||..|+++|+.|+..++..
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~-pN~~Lk~~Ie~~~~~~~~~ 176 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLI-PNLAMKEVIDAFIQENGWV 176 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCE-ECHHHHHHHHHHHHHCTTC
T ss_pred CCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCc-chHHHHHHHHHHHHHCCCc
Confidence 45679999999999999999999999999999999987544799999999998997 9999999999999988653
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=9.8e-16 Score=192.23 Aligned_cols=260 Identities=12% Similarity=0.009 Sum_probs=185.2
Q ss_pred cccccccccCcEEEEeeCCCCeEEEeCCcc-eeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCC-----Cccee
Q 001349 776 RKYSPLAFEMVKVLSNGHDSSADFWNHREL-VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG-----SILHL 847 (1094)
Q Consensus 776 ~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~-~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t-----~~~~~ 847 (1094)
+....+++| .+++.+ .++.|++||..+. ...+..+.+.+.+++|+|| .|++ +.|+.|++||+.+ + ..
T Consensus 84 v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~~g--~~ 158 (706)
T 2z3z_A 84 SFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEGMS--RA 158 (706)
T ss_dssp CEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSCCC--CC
T ss_pred ceeEEECCC-CeEEEE-ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEE-EECCeEEEEecCcccccCC--Cc
Confidence 344567778 655555 4599999999742 3344567788999999997 7777 4789999999998 7 34
Q ss_pred EEEecccCCC--------------eEEEEEecCCCEEEEEe---------------------------------CCCcEE
Q 001349 848 IQQIREHTKA--------------VTGLAILQSGEMLYSGS---------------------------------LDKTAR 880 (1094)
Q Consensus 848 ~~~l~~H~~~--------------V~sv~fspdg~~LaSgs---------------------------------~DgtI~ 880 (1094)
......+... +.++.|||||++|++++ .+++|+
T Consensus 159 ~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~ 238 (706)
T 2z3z_A 159 IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVG 238 (706)
T ss_dssp EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEE
T ss_pred EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEE
Confidence 4433333333 48899999999999998 457899
Q ss_pred EEECCCCceEEEEec-ccCccceeeeecCceEEEeeCCCeEEEEEeCC-----eEEEEcCCCC-----------------
Q 001349 881 VWSIGNEEIHCVQVH-DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNG-----KTKLLNSSKY----------------- 937 (1094)
Q Consensus 881 vWdi~~~~~~~~~~~-~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g-----~i~l~~~~~~----------------- 937 (1094)
+||+.+++...+... .+...+..+. |+|||+.+++...++ .+.+|+....
T Consensus 239 ~~d~~~~~~~~~~~~~~~~~~~~~~~-------~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~ 311 (706)
T 2z3z_A 239 IYHLATGKTVYLQTGEPKEKFLTNLS-------WSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEP 311 (706)
T ss_dssp EEETTTTEEEECCCCSCTTCEEEEEE-------ECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred EEECCCCceEeeccCCCCceeEeeEE-------EECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence 999999864333221 2344566666 999999998877665 7777775332
Q ss_pred ceEEEEeC---C-EEEEEEcCCeEEEEECC-CCceeEEeccceeecCCCCCeEE-EEEeCCccEEEEEECCCC----EEE
Q 001349 938 PKCLALVQ---G-KVYCGCQDGAIQEIDLA-TGTFATIQTGHRKLLGKANPVHA-LQVHNGLVYTASTSLDGA----AVK 1007 (1094)
Q Consensus 938 v~~l~~s~---~-~l~sgs~Dg~I~iwDl~-~~~~~~~~~~~~~~~~h~~~V~s-l~fs~~~~~las~s~Dg~----~I~ 1007 (1094)
+.++.|++ + .+++++.||.+++|++. ++... ..+..|...+.. +.|+|++..++..+.+++ .|.
T Consensus 312 ~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~------~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~ 385 (706)
T 2z3z_A 312 LHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLI------RQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFY 385 (706)
T ss_dssp CSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEE------EECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEE
T ss_pred cCCceeecCCCCEEEEEEccCCccEEEEEECCCCEE------EecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEE
Confidence 23456764 3 47778888999999876 45544 344556667876 799999987776665543 778
Q ss_pred EEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEc-C---CeEEEEECCCCc
Q 001349 1008 MWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCK-G---GTVEIWDQKRQI 1054 (1094)
Q Consensus 1008 iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~-d---g~I~vwd~~t~~ 1054 (1094)
.||..++. ...+.+...+..++|+|| +++.++. + +.|++||+.+++
T Consensus 386 ~~d~~~~~-~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 386 CIDIKGGK-TKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEETTCCC-CEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred EEEcCCCC-ceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 88887765 455667778999999998 5555433 3 569999998887
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-16 Score=197.95 Aligned_cols=240 Identities=8% Similarity=0.023 Sum_probs=168.8
Q ss_pred CcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCC---CeEEEEEecCCCEEEEEeCC---------CcE
Q 001349 814 GKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTK---AVTGLAILQSGEMLYSGSLD---------KTA 879 (1094)
Q Consensus 814 ~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~---~V~sv~fspdg~~LaSgs~D---------gtI 879 (1094)
..+.+++|+|| ++++ +.||+|++||+.++ +....+..|.. .|.+++|||||++|++++.+ +.|
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g--~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i 93 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETN--TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYY 93 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGC--CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCC--cEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeE
Confidence 34678899997 5555 78999999999998 55666666665 49999999999999999875 778
Q ss_pred EEEECCCCceEEEEecc-cCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEE
Q 001349 880 RVWSIGNEEIHCVQVHD-IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQ 958 (1094)
Q Consensus 880 ~vWdi~~~~~~~~~~~~-~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~ 958 (1094)
.+||+.+++...+.... +...+..+. |+|||+.+ +.++. +.|+
T Consensus 94 ~~~d~~~~~~~~l~~~~~~~~~~~~~~-------~SPdG~~l----------------------------a~~~~-~~i~ 137 (723)
T 1xfd_A 94 VLSKIPHGDPQSLDPPEVSNAKLQYAG-------WGPKGQQL----------------------------IFIFE-NNIY 137 (723)
T ss_dssp EEEESSSCCCEECCCTTCCSCCCSBCC-------BCSSTTCE----------------------------EEEET-TEEE
T ss_pred EEEECCCCceEeccCCccccccccccE-------ECCCCCEE----------------------------EEEEC-CeEE
Confidence 89999998643332221 222355555 99999864 34443 6888
Q ss_pred EEECCCCceeEEecccee---ecCCC---------CCeEEEEEeCCccEEEEEECCC-----------------------
Q 001349 959 EIDLATGTFATIQTGHRK---LLGKA---------NPVHALQVHNGLVYTASTSLDG----------------------- 1003 (1094)
Q Consensus 959 iwDl~~~~~~~~~~~~~~---~~~h~---------~~V~sl~fs~~~~~las~s~Dg----------------------- 1003 (1094)
+||+.+++.......... +.++. ..+.++.|+||+.+++.++.++
T Consensus 138 ~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (723)
T 1xfd_A 138 YCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYH 217 (723)
T ss_dssp EESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEE
T ss_pred EEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceecc
Confidence 999888776533221100 01111 1337899999999988887542
Q ss_pred ----------CEEEEEECCCCeEEEEecC-------CCCEEEEEEeCC--EEEEEEc----CCeEEEEECCCCcEEEEec
Q 001349 1004 ----------AAVKMWSTSNYNMVGSLPT-------LSEVRAMVVSSE--LVYLGCK----GGTVEIWDQKRQIRIETLQ 1060 (1094)
Q Consensus 1004 ----------~~I~iwd~~~~~~~~~~~~-------~~~v~~l~~spd--~l~sgs~----dg~I~vwd~~t~~~~~~l~ 1060 (1094)
..|++||+.+++....+.. ...+..++|+|| ++++.+. +..|++||+.+++....+.
T Consensus 218 ~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~ 297 (723)
T 1xfd_A 218 YPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE 297 (723)
T ss_dssp CCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE
T ss_pred CCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEE
Confidence 1799999998876555552 456889999999 5555543 3579999999998777664
Q ss_pred ccCCcceE----EEEEcCCCCEEEE--EeCCC------cEEEEe
Q 001349 1061 TGTSGKVQ----CMALDDNEEFLVI--GTSDG------RIQAWG 1092 (1094)
Q Consensus 1061 ~~h~~~I~----~l~~Spdg~~L~s--gs~DG------~I~iWd 1092 (1094)
..+.+.+. .++|||||+.|+. +..+| .|.+||
T Consensus 298 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 298 DESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp EECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred eccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 34444443 8899999997764 45677 566676
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.69 E-value=6e-16 Score=189.72 Aligned_cols=230 Identities=10% Similarity=0.075 Sum_probs=168.8
Q ss_pred CCCcEEEEEEeCC--EEEEEEC-CCeEEEEecCCCcceeEEEecccC-CCeEEEEEecCCCEEEEEeC---CCcEEEEEC
Q 001349 812 ENGKVLSIACFRD--KIFSGHS-DGTIKVWTGRGSILHLIQQIREHT-KAVTGLAILQSGEMLYSGSL---DKTARVWSI 884 (1094)
Q Consensus 812 h~~~V~~l~fspd--~LaSgs~-Dg~I~vWd~~t~~~~~~~~l~~H~-~~V~sv~fspdg~~LaSgs~---DgtI~vWdi 884 (1094)
+..+|++++|+|| .|++++. ||+++||++.++ .. ..+..|. ..|.+++|+|| +++++++. +...++|.+
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g--~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG--ET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT--EE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCC--Cc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEE
Confidence 3567999999997 8888776 999999999777 33 4455555 68999999999 78887775 555667655
Q ss_pred CC---CceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEE
Q 001349 885 GN---EEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEID 961 (1094)
Q Consensus 885 ~~---~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwD 961 (1094)
+. +... .... ...+... .|+|+|+.+ +++.+.++.+.+||
T Consensus 96 ~~~~~g~~~--~l~~-~~~~~~~-------~~s~dg~~~---------------------------~~~s~~~~~~~l~d 138 (582)
T 3o4h_A 96 NTSRPGEEQ--RLEA-VKPMRIL-------SGVDTGEAV---------------------------VFTGATEDRVALYA 138 (582)
T ss_dssp ETTSTTCCE--ECTT-SCSBEEE-------EEEECSSCE---------------------------EEEEECSSCEEEEE
T ss_pred eccCCCccc--cccC-CCCceee-------eeCCCCCeE---------------------------EEEecCCCCceEEE
Confidence 43 2212 1111 1122222 388888753 33344445555999
Q ss_pred CCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC---CEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EE
Q 001349 962 LATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG---AAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LV 1036 (1094)
Q Consensus 962 l~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg---~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l 1036 (1094)
+.+++..... .+.. .++.|+||+.++++++.++ ..|++||+.+++...-..+...+..++|||| .+
T Consensus 139 ~~~g~~~~l~-------~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l 209 (582)
T 3o4h_A 139 LDGGGLRELA-------RLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVT 209 (582)
T ss_dssp EETTEEEEEE-------EESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEE
T ss_pred ccCCcEEEee-------cCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEE
Confidence 9988765322 1222 7899999999999777651 3799999998887644447778999999999 78
Q ss_pred EEEEcCC--eEEEEECCCCcEEEEecccCCcceEEEE--------EcCCCCEEEEEeCCCcEEEEeC
Q 001349 1037 YLGCKGG--TVEIWDQKRQIRIETLQTGTSGKVQCMA--------LDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1037 ~sgs~dg--~I~vwd~~t~~~~~~l~~~h~~~I~~l~--------~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
+++..++ .|++||+.+++.. .+ .+|...+..++ |+|||.++++++.||++++|++
T Consensus 210 ~~~~~~~~~~i~~~d~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 210 AGLETAREARLVTVDPRDGSVE-DL-ELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp EEEECSSCEEEEEECTTTCCEE-EC-CCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred EEccCCCeeEEEEEcCCCCcEE-Ec-cCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 8777888 8999999999877 55 57777777777 9999999999999999999985
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-14 Score=163.56 Aligned_cols=261 Identities=9% Similarity=0.024 Sum_probs=178.9
Q ss_pred cccccCcEEEEeeCCCCeEEEeCCc--ceeecccCC-CcEEEEEEeCC--E-EEEEECCCeEEEEecCCCcceeEEEecc
Q 001349 780 PLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSEN-GKVLSIACFRD--K-IFSGHSDGTIKVWTGRGSILHLIQQIRE 853 (1094)
Q Consensus 780 ~~~~d~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~-~~V~~l~fspd--~-LaSgs~Dg~I~vWd~~t~~~~~~~~l~~ 853 (1094)
.+..++..+++++.++.|.+||..+ ....+..+. ..+..++|+|+ + ++++..++.|.+||+.++ +.+..+..
T Consensus 6 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~--~~~~~~~~ 83 (349)
T 1jmx_B 6 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC--KNTFHANL 83 (349)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT--EEEEEEES
T ss_pred cccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC--cEEEEEEc
Confidence 3456678899999999999999873 333333332 35789999986 4 456667899999999988 55655543
Q ss_pred c------CCCeEEEEEecCCCEEEEEeCC------------CcEEEEECCCCce-EEEEecccCccceeeeecCceEEEe
Q 001349 854 H------TKAVTGLAILQSGEMLYSGSLD------------KTARVWSIGNEEI-HCVQVHDIKDQIQNLAVSNSILCFI 914 (1094)
Q Consensus 854 H------~~~V~sv~fspdg~~LaSgs~D------------gtI~vWdi~~~~~-~~~~~~~~~~~V~~v~~~~~~~~fs 914 (1094)
+ ...+..++|+|||+++++++.+ +.|.+||+.+++. ...........+.++. |+
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-------~s 156 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMR-------AA 156 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEE-------EC
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCccccee-------EC
Confidence 2 2337889999999999999865 8999999987541 1122222233455555 99
Q ss_pred eCCCeEEEEEeCCeEEEEcCCCCc--eEEEEeC---------------------C---EE--EEEE-----------cCC
Q 001349 915 PQGAGIKVHLRNGKTKLLNSSKYP--KCLALVQ---------------------G---KV--YCGC-----------QDG 955 (1094)
Q Consensus 915 pdg~~l~~~~~~g~i~l~~~~~~v--~~l~~s~---------------------~---~l--~sgs-----------~Dg 955 (1094)
|+|+ +.+. ++.+.+|+....- ..+.... . .. +.-+ ...
T Consensus 157 ~dg~-l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 233 (349)
T 1jmx_B 157 DDGS-LYVA--GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY 233 (349)
T ss_dssp TTSC-EEEE--SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred CCCc-EEEc--cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccce
Confidence 9998 5553 4458888764321 1111110 0 00 0001 011
Q ss_pred eEEEEECCCCceeEEeccceeecCCCCCeEEEEEeC-CccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC
Q 001349 956 AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE 1034 (1094)
Q Consensus 956 ~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~-~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd 1034 (1094)
.+..+|..+++.... .+..+...+..++|+| ++.+++++ ++ .|.+||+.+++.+..+.....+.+++|+|+
T Consensus 234 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~sp~dg~~l~~~--~~-~v~~~d~~~~~~~~~~~~~~~~~~~~~s~d 305 (349)
T 1jmx_B 234 GYLSVDLKTGKTHTQ-----EFADLTELYFTGLRSPKDPNQIYGV--LN-RLAKYDLKQRKLIKAANLDHTYYCVAFDKK 305 (349)
T ss_dssp EEEEEETTTCCEEEE-----EEEECSSCEEEEEECSSCTTEEEEE--ES-EEEEEETTTTEEEEEEECSSCCCEEEECSS
T ss_pred eEEEEeccCCcEEec-----ccccCCCcceeeEecCCCCCEEEEE--cC-eEEEEECccCeEEEEEcCCCCccceEECCC
Confidence 223366666654321 1223456788999999 99888877 54 999999999999888886667889999998
Q ss_pred --EEEEEEcCCeEEEEECCCCcEEEEec
Q 001349 1035 --LVYLGCKGGTVEIWDQKRQIRIETLQ 1060 (1094)
Q Consensus 1035 --~l~sgs~dg~I~vwd~~t~~~~~~l~ 1060 (1094)
++++++.++.|++||..+++.+..+.
T Consensus 306 g~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 306 GDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp SSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred CCEEEEecCCCeEEEEeccccceeeeee
Confidence 67778889999999999999888885
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-15 Score=177.92 Aligned_cols=249 Identities=10% Similarity=0.121 Sum_probs=163.0
Q ss_pred CCeEEEeCCcceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCc--------ceeEEE-----ecccCCCeE
Q 001349 795 SSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI--------LHLIQQ-----IREHTKAVT 859 (1094)
Q Consensus 795 g~I~vWd~~~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~--------~~~~~~-----l~~H~~~V~ 859 (1094)
+.+++|+... ..+...++.++++++ ++++|+.|| |+||+..... ...+.. ...|.+.|+
T Consensus 23 ~~vri~~~~~-----~~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (434)
T 2oit_A 23 KKVRIFDSPE-----ELPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIH 96 (434)
T ss_dssp CEEECSCCCS-----SCCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEE
T ss_pred eeEEecCCcc-----ccCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCccc
Confidence 4678876532 123456788999985 899999888 8998753110 001111 123667899
Q ss_pred EEEEecCCCEEE----EEeCCCcEEEEECCCC-----c----eEEEE-ecccCccceeeeecCceEEEeeCCCeEEEEEe
Q 001349 860 GLAILQSGEMLY----SGSLDKTARVWSIGNE-----E----IHCVQ-VHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR 925 (1094)
Q Consensus 860 sv~fspdg~~La----Sgs~DgtI~vWdi~~~-----~----~~~~~-~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~ 925 (1094)
+++|+|+|++|+ +|+.|++|+|||+.++ + ..... ...|...|.++. |+|++.
T Consensus 97 ~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~-------~~p~~~------- 162 (434)
T 2oit_A 97 HLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMK-------WNPTVP------- 162 (434)
T ss_dssp EEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEE-------ECSSCT-------
T ss_pred EEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEE-------ECCCCC-------
Confidence 999999999999 7889999999998764 1 01111 122344555555 555421
Q ss_pred CCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCE
Q 001349 926 NGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAA 1005 (1094)
Q Consensus 926 ~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~ 1005 (1094)
..+++++.||+|++||++++... ....+|...|++++|+|++.++++++.|| +
T Consensus 163 --------------------~~las~s~Dg~v~iwD~~~~~~~------~~~~~~~~~v~~v~wspdg~~lasgs~dg-~ 215 (434)
T 2oit_A 163 --------------------SMVAVCLADGSIAVLQVTETVKV------CATLPSTVAVTSVCWSPKGKQLAVGKQNG-T 215 (434)
T ss_dssp --------------------TEEEEEETTSCEEEEEESSSEEE------EEEECGGGCEEEEEECTTSSCEEEEETTS-C
T ss_pred --------------------CEEEEEECCCeEEEEEcCCCcce------eeccCCCCceeEEEEcCCCCEEEEEcCCC-c
Confidence 24889999999999999988554 33456788999999999999999999997 9
Q ss_pred EEEEECCCCeEEEEec-C-------CCCEEEEEEeCC--EEE-EEEcCC------eEEEEECCCCc-----EEEEecc--
Q 001349 1006 VKMWSTSNYNMVGSLP-T-------LSEVRAMVVSSE--LVY-LGCKGG------TVEIWDQKRQI-----RIETLQT-- 1061 (1094)
Q Consensus 1006 I~iwd~~~~~~~~~~~-~-------~~~v~~l~~spd--~l~-sgs~dg------~I~vwd~~t~~-----~~~~l~~-- 1061 (1094)
|++||.+ ++....+. + ...+.++.|+++ +++ .++.+| .+++|++.+.+ ....+..
T Consensus 216 v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~ 294 (434)
T 2oit_A 216 VVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPC 294 (434)
T ss_dssp EEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSS
T ss_pred EEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCC
Confidence 9999998 55555554 2 127899999998 332 244443 38999987642 2222211
Q ss_pred ----cCCcceEEEEEcCCCCEEEEEeC-CCcEEEE
Q 001349 1062 ----GTSGKVQCMALDDNEEFLVIGTS-DGRIQAW 1091 (1094)
Q Consensus 1062 ----~h~~~I~~l~~Spdg~~L~sgs~-DG~I~iW 1091 (1094)
+...+-..+.+-+|.+++++++. .+.|.++
T Consensus 295 ~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl 329 (434)
T 2oit_A 295 YGSCTERQHHYYLSYIEEWDLVLAASAASTEVSIL 329 (434)
T ss_dssp CCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEE
T ss_pred CCCCCCcCcceeeehhccCCEEEEecCCCCceeEE
Confidence 12222233444477777766654 3334443
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.6e-14 Score=162.57 Aligned_cols=242 Identities=11% Similarity=0.148 Sum_probs=159.2
Q ss_pred cccccccCcEEEEeeC---CCCeEEEeCCc----ceeecccCCCcEEEEEEeCC--EEEEEE-CCCeEEEEecC-CCcce
Q 001349 778 YSPLAFEMVKVLSNGH---DSSADFWNHRE----LVHVDSSENGKVLSIACFRD--KIFSGH-SDGTIKVWTGR-GSILH 846 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~---dg~I~vWd~~~----~~~~~~~h~~~V~~l~fspd--~LaSgs-~Dg~I~vWd~~-t~~~~ 846 (1094)
...+++|++ +++++. ++.|.+|++.. .......|...+..++|+|+ +|++++ .+++|.+||+. ++...
T Consensus 44 ~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~ 122 (347)
T 3hfq_A 44 YLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALT 122 (347)
T ss_dssp CEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEE
T ss_pred eEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCee
Confidence 355677888 555544 68999999862 22333457788899999997 777777 78999999995 44334
Q ss_pred eEEEecc---------cCCCeEEEEEecCCCEEEEEeCCCcEEEEECC-CCceEEEEec--ccCccceeeeecCceEEEe
Q 001349 847 LIQQIRE---------HTKAVTGLAILQSGEMLYSGSLDKTARVWSIG-NEEIHCVQVH--DIKDQIQNLAVSNSILCFI 914 (1094)
Q Consensus 847 ~~~~l~~---------H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~-~~~~~~~~~~--~~~~~V~~v~~~~~~~~fs 914 (1094)
.+..+.. +...+.+++|+|||+++++...++.|++|++. +++....... .....+..+ +|+
T Consensus 123 ~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~-------~~s 195 (347)
T 3hfq_A 123 LTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHL-------VFS 195 (347)
T ss_dssp EEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEE-------EEC
T ss_pred ecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceE-------EEC
Confidence 4444432 12348899999999977777778999999998 5543332221 111223333 488
Q ss_pred eCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCC--CceeEEeccceeecC---CCCCeEEEEE
Q 001349 915 PQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT--GTFATIQTGHRKLLG---KANPVHALQV 989 (1094)
Q Consensus 915 pdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~--~~~~~~~~~~~~~~~---h~~~V~sl~f 989 (1094)
|||+.+ ++++..++.|.+|++.. ++....... ..... ....+..++|
T Consensus 196 pdg~~l---------------------------~v~~~~~~~v~v~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~i~~ 247 (347)
T 3hfq_A 196 PDGQYA---------------------------FLAGELSSQIASLKYDTQTGAFTQLGIV-KTIPADYTAHNGAAAIRL 247 (347)
T ss_dssp TTSSEE---------------------------EEEETTTTEEEEEEEETTTTEEEEEEEE-ESSCTTCCSCCEEEEEEE
T ss_pred CCCCEE---------------------------EEEeCCCCEEEEEEecCCCCceEEeeee-eecCCCCCCCCcceeEEE
Confidence 888753 33455678888888774 443211100 00000 1135889999
Q ss_pred eCCccEEEE-EECCCCEEEEEECCC---CeEEEEec-CCCCEEEEEEeCC--EEEEEEc-CCeEEEE--ECCCCcEE
Q 001349 990 HNGLVYTAS-TSLDGAAVKMWSTSN---YNMVGSLP-TLSEVRAMVVSSE--LVYLGCK-GGTVEIW--DQKRQIRI 1056 (1094)
Q Consensus 990 s~~~~~las-~s~Dg~~I~iwd~~~---~~~~~~~~-~~~~v~~l~~spd--~l~sgs~-dg~I~vw--d~~t~~~~ 1056 (1094)
+|++.+++. ...+ +.|.+||+.. ...+..+. +...+..++|+|| ++++++. ++.|.+| |..+++..
T Consensus 248 spdG~~l~v~~~~~-~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 248 SHDGHFLYVSNRGY-NTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp CTTSCEEEEEEETT-TEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CCCCCEEEEEeCCC-CEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 999987744 4445 4999999972 24555555 3566889999998 6777765 5899999 55667654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-14 Score=166.50 Aligned_cols=268 Identities=9% Similarity=0.079 Sum_probs=172.6
Q ss_pred EEEEeeCC--CCeEEEeCC--cc-eeec----ccCCCcEEEEEEeCC--EEEEEECCCeEEEEecC-CCcceeEEEeccc
Q 001349 787 KVLSNGHD--SSADFWNHR--EL-VHVD----SSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR-GSILHLIQQIREH 854 (1094)
Q Consensus 787 ~l~s~s~d--g~I~vWd~~--~~-~~~~----~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~-t~~~~~~~~l~~H 854 (1094)
+++.|++. +.|.+|+++ +. .... ..+...+..++|+|+ +|++++.+ .|.+||+. ++....+.....+
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 35555553 467777653 21 1111 123457889999997 78888888 99999997 7732222222211
Q ss_pred CCCeEEEEEecCCCE--EEEEe-------------CCCcEEEEECCC-CceE-EEEec--ccCccceeeeecCceEEEee
Q 001349 855 TKAVTGLAILQSGEM--LYSGS-------------LDKTARVWSIGN-EEIH-CVQVH--DIKDQIQNLAVSNSILCFIP 915 (1094)
Q Consensus 855 ~~~V~sv~fspdg~~--LaSgs-------------~DgtI~vWdi~~-~~~~-~~~~~--~~~~~V~~v~~~~~~~~fsp 915 (1094)
+.+..++|+|||++ +++++ .+|++.+|++.. ++.. .+... .....+..+. |+|
T Consensus 83 -g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~sp 154 (365)
T 1jof_A 83 -GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMV-------FDP 154 (365)
T ss_dssp -SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEE-------ECT
T ss_pred -CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEE-------ECC
Confidence 23566899999994 55553 689999999973 5432 12211 1223344444 788
Q ss_pred CCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEE-cCCeEEEEECC-CCceeEEeccceeecCCCCCeEEEEEeCCc
Q 001349 916 QGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGC-QDGAIQEIDLA-TGTFATIQTGHRKLLGKANPVHALQVHNGL 993 (1094)
Q Consensus 916 dg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs-~Dg~I~iwDl~-~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~ 993 (1094)
||+. ++++. .++.|.+||+. +++...... .....|...+..++|+|++
T Consensus 155 dG~~----------------------------l~~~~~~~~~v~~~~~~~~g~~~~~~~--~~~~~~g~~p~~~~~spdg 204 (365)
T 1jof_A 155 TETY----------------------------LYSADLTANKLWTHRKLASGEVELVGS--VDAPDPGDHPRWVAMHPTG 204 (365)
T ss_dssp TSSE----------------------------EEEEETTTTEEEEEEECTTSCEEEEEE--EECSSTTCCEEEEEECTTS
T ss_pred CCCE----------------------------EEEEcCCCCEEEEEEECCCCCEEEeee--EecCCCCCCCCEeEECCCC
Confidence 8875 44433 36789999998 676532211 1111245678999999999
Q ss_pred cEEEEEECCCCEEEEEECC--CCeEE---EEec---CC----C-------CEEEEE-EeCC--EEEEEEcC-C-----eE
Q 001349 994 VYTASTSLDGAAVKMWSTS--NYNMV---GSLP---TL----S-------EVRAMV-VSSE--LVYLGCKG-G-----TV 1045 (1094)
Q Consensus 994 ~~las~s~Dg~~I~iwd~~--~~~~~---~~~~---~~----~-------~v~~l~-~spd--~l~sgs~d-g-----~I 1045 (1094)
.+++.++..++.|.+|++. +++.. ..+. .. . .+..++ |+|| ++++++.+ + .|
T Consensus 205 ~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i 284 (365)
T 1jof_A 205 NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYI 284 (365)
T ss_dssp SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEE
T ss_pred CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeE
Confidence 9888877655699999865 56542 2222 11 2 488999 9998 66666542 3 89
Q ss_pred EEEECC-CCcEEEE--ecccCCcceEEEEEcC---CCCEEEEEeCC-CcEEEEeC
Q 001349 1046 EIWDQK-RQIRIET--LQTGTSGKVQCMALDD---NEEFLVIGTSD-GRIQAWGL 1093 (1094)
Q Consensus 1046 ~vwd~~-t~~~~~~--l~~~h~~~I~~l~~Sp---dg~~L~sgs~D-G~I~iWdl 1093 (1094)
.+|++. +++.... +...+...+..++|+| ||++|++++.+ ++|.+|++
T Consensus 285 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~ 339 (365)
T 1jof_A 285 AGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW 339 (365)
T ss_dssp EEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred EEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence 999996 6665432 1123444577899999 89999999865 89999986
|
| >2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.6e-17 Score=147.03 Aligned_cols=72 Identities=29% Similarity=0.530 Sum_probs=63.5
Q ss_pred CCceeccCccccccCcEEcC-CcccccHHhHHHHHHhC-----CCCCCC--CCcC-CCCCCCCChhHHHHHHHHHHHHhC
Q 001349 161 PKDFVCPITTHIFDDPVTLE-TGQTYERRAIQEWIERG-----NSSCPI--TRQK-LSSTKLPKTNYVLKRLIASWQEQN 231 (1094)
Q Consensus 161 ~~~~~CpIc~~~~~dPv~~~-cGhtfc~~ci~~~~~~~-----~~~CP~--c~~~-~~~~~~~~pN~~l~~~i~~~~~~~ 231 (1094)
+++|.||||+++|.|||+++ |||+||+.||..||..+ ...||+ |++. +...+++ ||..|+++|+.|+..+
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~-pn~~L~~~I~~~~~~~ 83 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLI-QDEALRRAIENHNKKR 83 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEE-ECHHHHHHHHHHHTTC
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCc-CCHHHHHHHHHHHHHh
Confidence 45899999999999999995 99999999999999863 347999 7776 8888897 9999999999999876
Q ss_pred CC
Q 001349 232 PG 233 (1094)
Q Consensus 232 ~~ 233 (1094)
..
T Consensus 84 ~r 85 (94)
T 2yu4_A 84 HR 85 (94)
T ss_dssp CS
T ss_pred cc
Confidence 53
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.3e-16 Score=192.92 Aligned_cols=303 Identities=9% Similarity=0.030 Sum_probs=191.2
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCCc--ceeecccCCC---cEEEEEEeCC--EEEEEEC---------CCeEEEEecC
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENG---KVLSIACFRD--KIFSGHS---------DGTIKVWTGR 841 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~---~V~~l~fspd--~LaSgs~---------Dg~I~vWd~~ 841 (1094)
...+++|+.+++ .+.|+.|++||... ......+|.. .|.+++|||| +|++++. |++|++||+.
T Consensus 20 ~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLH-QSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEE-ECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 345667885444 45699999999873 3344444433 4899999997 7887766 7999999999
Q ss_pred CCcceeE--EEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCcccee-e---------eecCc
Q 001349 842 GSILHLI--QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQN-L---------AVSNS 909 (1094)
Q Consensus 842 t~~~~~~--~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~-v---------~~~~~ 909 (1094)
++. .+ ..+ ...+..++|||||+.|+.++ |++|++||+.+++...+........+.. . .....
T Consensus 99 ~g~--~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~ 172 (719)
T 1z68_A 99 NGE--FVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKY 172 (719)
T ss_dssp TTE--ECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSC
T ss_pred CCc--cccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcc
Confidence 983 31 222 35688999999999999986 6899999999886433322222111110 0 00012
Q ss_pred eEEEeeCCCeEEEEEeC-CeEEEEc-----CC--CCceEEEEeC-CEEEEEEcCCeEEEEECCCCcee--EEeccceeec
Q 001349 910 ILCFIPQGAGIKVHLRN-GKTKLLN-----SS--KYPKCLALVQ-GKVYCGCQDGAIQEIDLATGTFA--TIQTGHRKLL 978 (1094)
Q Consensus 910 ~~~fspdg~~l~~~~~~-g~i~l~~-----~~--~~v~~l~~s~-~~l~sgs~Dg~I~iwDl~~~~~~--~~~~~~~~~~ 978 (1094)
...|+|||+.++....+ +.+..|. .. ..+..+.+.. +. ...+..|++||+.+++.. ........+.
T Consensus 173 ~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~---~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 249 (719)
T 1z68_A 173 ALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGA---KNPVVRIFIIDTTYPAYVGPQEVPVPAMIA 249 (719)
T ss_dssp CEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTS---CCCEEEEEEEESSCHHHHCCEECCCCHHHH
T ss_pred cEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCC---CCCeeEEEEEECCCCCccceeEccCCccCC
Confidence 34599999999987765 2222221 01 1111122110 00 012237899999987642 1111112345
Q ss_pred CCCCCeEEEEEeCCccEEEEEECCC---CEEEEEE----CCCCeEEEEe-----cCCCCEE-----EEEEeCC--EE-E-
Q 001349 979 GKANPVHALQVHNGLVYTASTSLDG---AAVKMWS----TSNYNMVGSL-----PTLSEVR-----AMVVSSE--LV-Y- 1037 (1094)
Q Consensus 979 ~h~~~V~sl~fs~~~~~las~s~Dg---~~I~iwd----~~~~~~~~~~-----~~~~~v~-----~l~~spd--~l-~- 1037 (1094)
+|...+..++|+||+.++++....+ ..|.+|| ..+++....+ .+...+. .+.|+|| .+ +
T Consensus 250 ~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 329 (719)
T 1z68_A 250 SSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKI 329 (719)
T ss_dssp TSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEE
T ss_pred CCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEE
Confidence 6788899999999988777643221 2588899 8777655444 2444555 7899998 33 3
Q ss_pred EEEcCC--eEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCC-----CcEEEEeC
Q 001349 1038 LGCKGG--TVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSD-----GRIQAWGL 1093 (1094)
Q Consensus 1038 sgs~dg--~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~D-----G~I~iWdl 1093 (1094)
++..+| .|++||+.+++ ...+ ..+...+..+.++ +++.|+..+.+ +.+++|.+
T Consensus 330 ~~~~~g~~~l~~~~~~~~~-~~~l-t~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~ 389 (719)
T 1z68_A 330 FSDKDGYKHIHYIKDTVEN-AIQI-TSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRI 389 (719)
T ss_dssp EECTTSCEEEEEESSCSTT-CEEC-SCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEE
T ss_pred EEccCCceEEEEEECCCCc-eEec-ccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEE
Confidence 344555 57778887776 4455 3455568888888 88877766665 88899975
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-14 Score=162.41 Aligned_cols=249 Identities=12% Similarity=0.060 Sum_probs=176.5
Q ss_pred ccccccccCcEE-EEeeCCCCeEEEeCCc--ceeecc-cC----CCcEEEEEEeCC--EEEEEE------------CCCe
Q 001349 777 KYSPLAFEMVKV-LSNGHDSSADFWNHRE--LVHVDS-SE----NGKVLSIACFRD--KIFSGH------------SDGT 834 (1094)
Q Consensus 777 ~~~~~~~d~~~l-~s~s~dg~I~vWd~~~--~~~~~~-~h----~~~V~~l~fspd--~LaSgs------------~Dg~ 834 (1094)
....+++++.++ ++++.++.|.+||..+ ....+. ++ ...+.+++|+|+ ++++++ .++.
T Consensus 37 ~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~ 116 (337)
T 1pby_B 37 MVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTR 116 (337)
T ss_dssp CCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCE
T ss_pred cceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCce
Confidence 345577788765 5566678999999873 222222 22 226778999986 777775 5799
Q ss_pred EEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEe
Q 001349 835 IKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFI 914 (1094)
Q Consensus 835 I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fs 914 (1094)
|.+||+.++ +.+..+.. ...+.+++|+|||++|+++ ++.|.+||+.+++....... ......+. |+
T Consensus 117 i~v~d~~~~--~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~--~~~~~~~~-------~s 182 (337)
T 1pby_B 117 VALYDAETL--SRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPI--QSWEAETY-------AQ 182 (337)
T ss_dssp EEEEETTTT--EEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECS--TTTTTTTB-------CC
T ss_pred EEEEECCCC--cEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeec--cccCCCce-------eC
Confidence 999999988 56666653 4568889999999988888 68899999998863322211 11111112 78
Q ss_pred eCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCC----------eEEEEECCCCceeEEeccceeecCCCCCe
Q 001349 915 PQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDG----------AIQEIDLATGTFATIQTGHRKLLGKANPV 984 (1094)
Q Consensus 915 pdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg----------~I~iwDl~~~~~~~~~~~~~~~~~h~~~V 984 (1094)
|+|..+.+....+....+ ....+..++ .|.+||+.+++.. . ..+..+...+
T Consensus 183 ~dg~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~----~~~~~~~~~~ 243 (337)
T 1pby_B 183 PDVLAVWNQHESSGVMAT--------------PFYTARKDIDPADPTAYRTGLLTMDLETGEMA-M----REVRIMDVFY 243 (337)
T ss_dssp CBCCCCCCCCTTTTEEEE--------------EEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-E----EEEEECSSCE
T ss_pred CCccEEeeeccCCCceee--------------eeeccccccccccccccccceEEEeCCCCCce-E----eecCCCCCce
Confidence 888865444332221100 011122222 6899999998875 2 2334456678
Q ss_pred EEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecc
Q 001349 985 HALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQT 1061 (1094)
Q Consensus 985 ~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~ 1061 (1094)
..++|+|++.+++++ ++ .|.+||+.+++.+..+.....+.+++|+|+ ++++++.++.|++||+.+++.+..+..
T Consensus 244 ~~~~~s~dg~~l~~~--~~-~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 244 FSTAVNPAKTRAFGA--YN-VLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp EEEEECTTSSEEEEE--ES-EEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred eeEEECCCCCEEEEe--CC-eEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 899999999988877 44 999999999999888887777889999998 788888899999999999999888853
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.64 E-value=7.8e-14 Score=159.63 Aligned_cols=260 Identities=15% Similarity=0.157 Sum_probs=169.7
Q ss_pred cccccccCcEEEEeeCC----CCeEEEeCCc------ceeecccCCCcEEEEEEeCCEEEEEE-CCCeEEEEecCCCc-c
Q 001349 778 YSPLAFEMVKVLSNGHD----SSADFWNHRE------LVHVDSSENGKVLSIACFRDKIFSGH-SDGTIKVWTGRGSI-L 845 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~d----g~I~vWd~~~------~~~~~~~h~~~V~~l~fspd~LaSgs-~Dg~I~vWd~~t~~-~ 845 (1094)
...+++|++++++++.+ +.|.+|++.. .+.....+...+..+++..+++++++ .+++|.+|++.+.. .
T Consensus 54 ~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~ 133 (361)
T 3scy_A 54 YLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGAL 133 (361)
T ss_dssp SEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCB
T ss_pred eEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcC
Confidence 45677889999988886 7999998752 12223335667888888445666655 68999999997531 1
Q ss_pred eeEE---Eecc--------cCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCc-------eEE-----EEecccCccc
Q 001349 846 HLIQ---QIRE--------HTKAVTGLAILQSGEMLYSGS-LDKTARVWSIGNEE-------IHC-----VQVHDIKDQI 901 (1094)
Q Consensus 846 ~~~~---~l~~--------H~~~V~sv~fspdg~~LaSgs-~DgtI~vWdi~~~~-------~~~-----~~~~~~~~~V 901 (1094)
..+. ...+ +...+.+++|+|||+++++++ .++.|++|+++... +.. ..........
T Consensus 134 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 213 (361)
T 3scy_A 134 LPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGP 213 (361)
T ss_dssp CSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCE
T ss_pred cccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCC
Confidence 1111 1111 233468899999999776655 48899999987643 111 1111222223
Q ss_pred eeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEE-cCCeEEEEECCCCceeEEeccceeecCC
Q 001349 902 QNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGC-QDGAIQEIDLATGTFATIQTGHRKLLGK 980 (1094)
Q Consensus 902 ~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs-~Dg~I~iwDl~~~~~~~~~~~~~~~~~h 980 (1094)
..+. |+|||+. +++++ .++.|.+||+.++....... ......+
T Consensus 214 ~~~~-------~spdg~~----------------------------l~v~~~~~~~v~v~~~~~g~~~~~~~-~~~~~~~ 257 (361)
T 3scy_A 214 RHLI-------FNSDGKF----------------------------AYLINEIGGTVIAFRYADGMLDEIQT-VAADTVN 257 (361)
T ss_dssp EEEE-------ECTTSSE----------------------------EEEEETTTCEEEEEEEETTEEEEEEE-EESCSSC
T ss_pred eEEE-------EcCCCCE----------------------------EEEEcCCCCeEEEEEecCCceEEeEE-EecCCCC
Confidence 3333 7777775 44444 68899999998775432211 1122334
Q ss_pred CCCeEEEEEeCCccEEEEEECC-CCEEEEEECC--CCe--EEEEecCCCCEEEEEEeCC--EEEEEE-cCCeEEEE--EC
Q 001349 981 ANPVHALQVHNGLVYTASTSLD-GAAVKMWSTS--NYN--MVGSLPTLSEVRAMVVSSE--LVYLGC-KGGTVEIW--DQ 1050 (1094)
Q Consensus 981 ~~~V~sl~fs~~~~~las~s~D-g~~I~iwd~~--~~~--~~~~~~~~~~v~~l~~spd--~l~sgs-~dg~I~vw--d~ 1050 (1094)
......++|+|++.+++.+..+ ++.|.+|++. ++. .+..+.....+..++|+|| ++++++ .++.|.+| |.
T Consensus 258 ~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 258 AQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp CCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred CCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 4567899999999988776665 4599999995 444 4444545567889999998 677777 67999996 55
Q ss_pred CCCcEEEEecccCCcceEEEEEc
Q 001349 1051 KRQIRIETLQTGTSGKVQCMALD 1073 (1094)
Q Consensus 1051 ~t~~~~~~l~~~h~~~I~~l~~S 1073 (1094)
.+++........+...+.|+.|.
T Consensus 338 ~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 338 ATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp TTCCEEECSCCEECSSEEEEEEE
T ss_pred CCCcEeecceeeeCCCCeEEEEc
Confidence 57776554433355578999886
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.1e-16 Score=173.67 Aligned_cols=76 Identities=26% Similarity=0.451 Sum_probs=69.5
Q ss_pred CCCCCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHhCCC
Q 001349 157 KHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPG 233 (1094)
Q Consensus 157 ~~~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~~~~ 233 (1094)
...+|++|.||||+++|.|||+++||||||+.||..|+..+..+||.|+++++...++ ||..|+++|+.|+..++.
T Consensus 202 ~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~-~n~~l~~~i~~~~~~~~~ 277 (281)
T 2c2l_A 202 KRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLI-PNLAMKEVIDAFISENGW 277 (281)
T ss_dssp CCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCE-ECHHHHHHHHHHHTTCSC
T ss_pred CCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCc-ccHHHHHHHHHHHHHCCC
Confidence 3466789999999999999999999999999999999998665699999999988997 999999999999987764
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-13 Score=158.36 Aligned_cols=273 Identities=7% Similarity=-0.054 Sum_probs=176.2
Q ss_pred ccccccCcEEEEeeC-CCC--eEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEe
Q 001349 779 SPLAFEMVKVLSNGH-DSS--ADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQI 851 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~-dg~--I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l 851 (1094)
..+++||++|++.+. ++. |.+||.. .......+|...+..+.|+|| .|+.++.++.|++||+.++. ....+
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~--~~~~~ 118 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLE--ENVVY 118 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCC--EEEEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCc--ceeee
Confidence 568899999999888 675 6666765 334444556555557789997 89999999999999999984 44444
Q ss_pred cccCCCeEEEE--EecCCCEEEEE----------------------eCCCcEEEEECCCCceEEEEecccCccceeeeec
Q 001349 852 REHTKAVTGLA--ILQSGEMLYSG----------------------SLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVS 907 (1094)
Q Consensus 852 ~~H~~~V~sv~--fspdg~~LaSg----------------------s~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~ 907 (1094)
..+...+.... ++|++.+++.. +.++.|.+||+.+++...+.. ....+..+.
T Consensus 119 ~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~--~~~~~~~~~-- 194 (388)
T 3pe7_A 119 QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQ--ENQWLGHPI-- 194 (388)
T ss_dssp ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEE--ESSCEEEEE--
T ss_pred echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeec--CCccccccE--
Confidence 45555554444 48999988743 244679999999986544432 234455555
Q ss_pred CceEEEee-CCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCC--CCe
Q 001349 908 NSILCFIP-QGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKA--NPV 984 (1094)
Q Consensus 908 ~~~~~fsp-dg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~--~~V 984 (1094)
|+| ||+.++.....+. ...+..|.++|..++... .+..+. ..+
T Consensus 195 -----~sp~dg~~l~~~~~~~~----------------------~~~~~~l~~~d~~~~~~~-------~l~~~~~~~~~ 240 (388)
T 3pe7_A 195 -----YRPYDDSTVAFCHEGPH----------------------DLVDARMWLINEDGTNMR-------KVKTHAEGESC 240 (388)
T ss_dssp -----EETTEEEEEEEEECSCT----------------------TTSSCSEEEEETTSCCCE-------ESCCCCTTEEE
T ss_pred -----ECCCCCCEEEEEEecCC----------------------CCCcceEEEEeCCCCceE-------EeeeCCCCccc
Confidence 888 8876543322110 001347888887766543 222232 257
Q ss_pred EEEEEeCCccEEEEEEC-CCC---EEEEEECCCCeEEEEecCCCC------EEEEEEeCC--EEEEE---------EcCC
Q 001349 985 HALQVHNGLVYTASTSL-DGA---AVKMWSTSNYNMVGSLPTLSE------VRAMVVSSE--LVYLG---------CKGG 1043 (1094)
Q Consensus 985 ~sl~fs~~~~~las~s~-Dg~---~I~iwd~~~~~~~~~~~~~~~------v~~l~~spd--~l~sg---------s~dg 1043 (1094)
....|+|++..++..+. ++. .|.+||+.+++.......... .....|+|| .++.. ..+.
T Consensus 241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~ 320 (388)
T 3pe7_A 241 THEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDP 320 (388)
T ss_dssp EEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCC
T ss_pred ccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCC
Confidence 78899999986655443 222 399999998874332221110 111357777 34432 4567
Q ss_pred eEEEEECCCCcEEEEecccCCc-----------ceEEEEEcCCCCEEEEEe-CCCcEEEEeC
Q 001349 1044 TVEIWDQKRQIRIETLQTGTSG-----------KVQCMALDDNEEFLVIGT-SDGRIQAWGL 1093 (1094)
Q Consensus 1044 ~I~vwd~~t~~~~~~l~~~h~~-----------~I~~l~~Spdg~~L~sgs-~DG~I~iWdl 1093 (1094)
.|++||+.+++.. .+ ..|.. .+.+++|+|||+.|+.++ .+|...+|.+
T Consensus 321 ~i~~~d~~~~~~~-~l-~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 321 FLYVFNMKNGTQH-RV-ARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp EEEEEETTTTEEE-EE-EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred EEEEEeccCCceE-Ee-ccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 8999999988753 34 23444 578899999999887665 5777777754
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.7e-15 Score=186.49 Aligned_cols=236 Identities=13% Similarity=0.072 Sum_probs=160.5
Q ss_pred EEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEecccCC---CeEEEEEecCCCEEEEEeC---------CCcEEEEEC
Q 001349 818 SIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTK---AVTGLAILQSGEMLYSGSL---------DKTARVWSI 884 (1094)
Q Consensus 818 ~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~---~V~sv~fspdg~~LaSgs~---------DgtI~vWdi 884 (1094)
+++|+|+ .++..+.||+|++||+.++ .....+.+|.. .|.+++|||||++|++++. |++|++||+
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETG--QSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSC--CEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCC--cEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 6789997 5555667999999999998 55555555544 4899999999999999887 789999999
Q ss_pred CCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCC
Q 001349 885 GNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT 964 (1094)
Q Consensus 885 ~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~ 964 (1094)
.+++. .........+..+. |+|||+.+ +.+ .|+.|++||+.+
T Consensus 98 ~~g~~--~~~~~l~~~~~~~~-------~SPDG~~l----------------------------a~~-~~~~i~~~~~~~ 139 (719)
T 1z68_A 98 SNGEF--VRGNELPRPIQYLC-------WSPVGSKL----------------------------AYV-YQNNIYLKQRPG 139 (719)
T ss_dssp TTTEE--CCSSCCCSSBCCEE-------ECSSTTCE----------------------------EEE-ETTEEEEESSTT
T ss_pred CCCcc--ccceecCcccccce-------ECCCCCEE----------------------------EEE-ECCeEEEEeCCC
Confidence 99853 10011123444444 99999864 333 367899999988
Q ss_pred CceeEEeccc---eeecCCCCC---------eEEEEEeCCccEEEEEECCCC----------------------------
Q 001349 965 GTFATIQTGH---RKLLGKANP---------VHALQVHNGLVYTASTSLDGA---------------------------- 1004 (1094)
Q Consensus 965 ~~~~~~~~~~---~~~~~h~~~---------V~sl~fs~~~~~las~s~Dg~---------------------------- 1004 (1094)
+......... ..+.||... ..++.|+||+.++++++.|++
T Consensus 140 g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~ 219 (719)
T 1z68_A 140 DPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGA 219 (719)
T ss_dssp SCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTS
T ss_pred CCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCC
Confidence 7765321110 011222222 258999999999998876531
Q ss_pred -----EEEEEECCCCeEE--EEe------c-CCCCEEEEEEeCC--EEEEEEcC----CeEEEEE----CCCCcEEEEec
Q 001349 1005 -----AVKMWSTSNYNMV--GSL------P-TLSEVRAMVVSSE--LVYLGCKG----GTVEIWD----QKRQIRIETLQ 1060 (1094)
Q Consensus 1005 -----~I~iwd~~~~~~~--~~~------~-~~~~v~~l~~spd--~l~sgs~d----g~I~vwd----~~t~~~~~~l~ 1060 (1094)
.|++||+.+++.. ..+ . +...+..++|+|| ++++.... ..|.+|| ..+++....+.
T Consensus 220 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~ 299 (719)
T 1z68_A 220 KNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQE 299 (719)
T ss_dssp CCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGE
T ss_pred CCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEe
Confidence 7889999887642 111 1 5567899999999 44443322 3488999 87776544332
Q ss_pred ---ccCCcceE-----EEEEcCCCCEEEE--EeCCCc--EEEEeC
Q 001349 1061 ---TGTSGKVQ-----CMALDDNEEFLVI--GTSDGR--IQAWGL 1093 (1094)
Q Consensus 1061 ---~~h~~~I~-----~l~~Spdg~~L~s--gs~DG~--I~iWdl 1093 (1094)
.+|.+.+. .+.|+|||+.|+. +..+|. |.+||+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~ 344 (719)
T 1z68_A 300 HIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKD 344 (719)
T ss_dssp EEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESS
T ss_pred cccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEEC
Confidence 36777776 8899999996543 545664 555554
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=8e-13 Score=151.79 Aligned_cols=284 Identities=11% Similarity=0.142 Sum_probs=181.7
Q ss_pred cCcEEEEee------CCCCeEEEeCCc--ceeecccCCCcEEEEEEeCC--EEEEEE----------CCCeEEEEecCCC
Q 001349 784 EMVKVLSNG------HDSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGH----------SDGTIKVWTGRGS 843 (1094)
Q Consensus 784 d~~~l~s~s------~dg~I~vWd~~~--~~~~~~~h~~~V~~l~fspd--~LaSgs----------~Dg~I~vWd~~t~ 843 (1094)
++.+++... .|+.|.+||..+ ....+..+..+ .++|+|| ++++++ .+++|.+||..+.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 566555532 478999999763 33444444444 8999997 777765 3678999999987
Q ss_pred cceeEEEeccc------CCCeEEEEEecCCCEEEEEeC--CCcEEEEECCCCceEEEEe-cccCccceeeeecCc----e
Q 001349 844 ILHLIQQIREH------TKAVTGLAILQSGEMLYSGSL--DKTARVWSIGNEEIHCVQV-HDIKDQIQNLAVSNS----I 910 (1094)
Q Consensus 844 ~~~~~~~l~~H------~~~V~sv~fspdg~~LaSgs~--DgtI~vWdi~~~~~~~~~~-~~~~~~V~~v~~~~~----~ 910 (1094)
+.+.++..+ ......++|+|||++|+++.. +++|.+||+.+++. +.. ...... ..+.+.+. .
T Consensus 92 --~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~--~~~~i~~~~~-~~v~~~p~~~~~~ 166 (361)
T 2oiz_A 92 --TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDY--VEDVTAAAGC-WSVIPQPNRPRSF 166 (361)
T ss_dssp --CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEE--EEEEGGGTTE-EEEEECTTSSSEE
T ss_pred --cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcE--EEEEecCCCc-ceeEEcCCCCeeE
Confidence 566666432 345678999999999998874 68999999999843 333 322211 11111111 2
Q ss_pred EEEeeCCCeEEEEEeC-CeEE-------EEcCCCCceEEE--EeCCEEEEEEcCCeEEEEECCCCceeEEe--ccce--e
Q 001349 911 LCFIPQGAGIKVHLRN-GKTK-------LLNSSKYPKCLA--LVQGKVYCGCQDGAIQEIDLATGTFATIQ--TGHR--K 976 (1094)
Q Consensus 911 ~~fspdg~~l~~~~~~-g~i~-------l~~~~~~v~~l~--~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~--~~~~--~ 976 (1094)
+.++++|+.+.+.... +.+. +|+.......+. ..+..++..+.++.|.+||+..+...... .... .
T Consensus 167 ~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~ 246 (361)
T 2oiz_A 167 MTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDED 246 (361)
T ss_dssp EEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHH
T ss_pred EEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccc
Confidence 3456666655544332 3332 222221111111 12346677778999999999765432111 0000 0
Q ss_pred ec-C-CCCCeEEEEEeCCccEEEEEEC-C---------CCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcC
Q 001349 977 LL-G-KANPVHALQVHNGLVYTASTSL-D---------GAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKG 1042 (1094)
Q Consensus 977 ~~-~-h~~~V~sl~fs~~~~~las~s~-D---------g~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~d 1042 (1094)
.. + .......++|++++..+..+.. + +..|.+||+.+++.+.++..+. +.+++|+|| ++++++.
T Consensus 247 ~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~- 324 (361)
T 2oiz_A 247 KAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG- 324 (361)
T ss_dssp HHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-
T ss_pred cccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-
Confidence 00 0 0011123688988665554432 1 1389999999999999998666 999999998 7887776
Q ss_pred CeEEEEECCCC--cEEEEecccCCcceEEEEEcCCCC
Q 001349 1043 GTVEIWDQKRQ--IRIETLQTGTSGKVQCMALDDNEE 1077 (1094)
Q Consensus 1043 g~I~vwd~~t~--~~~~~l~~~h~~~I~~l~~Spdg~ 1077 (1094)
++|.|||..++ +.+.++ ..+......++++|||.
T Consensus 325 ~~v~v~D~~t~~l~~~~~i-~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 325 GNVNVYDISQPEPKLLRTI-EGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SCEEEEECSSSSCEEEEEE-TTSCSSEEEEEECCCSC
T ss_pred CeEEEEECCCCcceeeEEe-ccCCCCcEEEEecCCCC
Confidence 99999999999 999887 35666789999999986
|
| >3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.4e-15 Score=136.32 Aligned_cols=74 Identities=22% Similarity=0.460 Sum_probs=64.5
Q ss_pred CCCCCceeccCccccccCcEEcC-CcccccHHhHHHHHHhC-CCCCCCCCcCC-CCCCCCChhHHHHHHHHHHHHhCC
Q 001349 158 HTPPKDFVCPITTHIFDDPVTLE-TGQTYERRAIQEWIERG-NSSCPITRQKL-SSTKLPKTNYVLKRLIASWQEQNP 232 (1094)
Q Consensus 158 ~~~~~~~~CpIc~~~~~dPv~~~-cGhtfc~~ci~~~~~~~-~~~CP~c~~~~-~~~~~~~pN~~l~~~i~~~~~~~~ 232 (1094)
..+++++.||||+++|.+||+++ |||+||+.||..|+... ...||.||+.+ ....+. +|..|+++|+.|+..++
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~-~n~~l~~~i~~~~~~~~ 84 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALI-ANKFLRQAVNNFKNETG 84 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCE-ECHHHHHHHHHHHHHHT
T ss_pred ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccC-cCHHHHHHHHHHHHHHh
Confidence 35667999999999999999999 99999999999999753 35799999997 455675 99999999999998654
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=6.4e-13 Score=167.69 Aligned_cols=305 Identities=10% Similarity=0.007 Sum_probs=191.1
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCc-----EEEEEEeCC--EEEEEECC---------CeEEEEe
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGK-----VLSIACFRD--KIFSGHSD---------GTIKVWT 839 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~-----V~~l~fspd--~LaSgs~D---------g~I~vWd 839 (1094)
...+.+|+.+++++ |++|++||.. .....+.+|... ...+.|||| +|+.++.+ +.+.+||
T Consensus 21 ~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d 98 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (740)
T ss_dssp CEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEE
Confidence 45577788888886 9999999987 344555666532 344789998 78888776 5677999
Q ss_pred cCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCcccee-ee---------ecCc
Q 001349 840 GRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQN-LA---------VSNS 909 (1094)
Q Consensus 840 ~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~-v~---------~~~~ 909 (1094)
+.++ + ...+..|.+.+...+|||||+.||.++ |+.|++||..+++...+........+.. .. -...
T Consensus 99 ~~~~--~-~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~ 174 (740)
T 4a5s_A 99 LNKR--Q-LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS 174 (740)
T ss_dssp TTTT--E-ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred CCCC--c-EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCc
Confidence 9998 3 345677888999999999999999885 6899999999886443332222211110 00 0112
Q ss_pred eEEEeeCCCeEEEEEeCC------------------------------------eEEEEcCCC---C-------------
Q 001349 910 ILCFIPQGAGIKVHLRNG------------------------------------KTKLLNSSK---Y------------- 937 (1094)
Q Consensus 910 ~~~fspdg~~l~~~~~~g------------------------------------~i~l~~~~~---~------------- 937 (1094)
...|+|||+.|+....+. .+.+|+..+ .
T Consensus 175 ~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~ 254 (740)
T 4a5s_A 175 ALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS 254 (740)
T ss_dssp CEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHH
T ss_pred ceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCcc
Confidence 345999999998765331 355666544 2
Q ss_pred -------ceEEEEeC-CE-EEEEEc----CCeEEEEECCCCc----eeEEeccceee--cCCCCCeE-----EEEEeCCc
Q 001349 938 -------PKCLALVQ-GK-VYCGCQ----DGAIQEIDLATGT----FATIQTGHRKL--LGKANPVH-----ALQVHNGL 993 (1094)
Q Consensus 938 -------v~~l~~s~-~~-l~sgs~----Dg~I~iwDl~~~~----~~~~~~~~~~~--~~h~~~V~-----sl~fs~~~ 993 (1094)
+..++|++ ++ ++.... +..|.+||+.+++ +... ..+ .+|...|. ...|+||+
T Consensus 255 ~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~----~~l~~~~~~~~v~~~~~~~p~fspDG 330 (740)
T 4a5s_A 255 MLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVA----RQHIEMSTTGWVGRFRPSEPHFTLDG 330 (740)
T ss_dssp HHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGG----GCEEEECSSSCSSSSSCCCCEECTTS
T ss_pred CCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEE----EEeeeccCCceEccCcCCCceEcCCC
Confidence 34556664 55 333322 2369999999887 2211 111 33444443 67899999
Q ss_pred cEEE-EEECC-C-CEEEEEECCCCeEEEEecCCCCEEEEE-EeCCEE-EEEEc----CC--eEEEEECCCCcEEEEecc-
Q 001349 994 VYTA-STSLD-G-AAVKMWSTSNYNMVGSLPTLSEVRAMV-VSSELV-YLGCK----GG--TVEIWDQKRQIRIETLQT- 1061 (1094)
Q Consensus 994 ~~la-s~s~D-g-~~I~iwd~~~~~~~~~~~~~~~v~~l~-~spd~l-~sgs~----dg--~I~vwd~~t~~~~~~l~~- 1061 (1094)
..++ ..+.+ | ..|.+||..++.......+...+..+. ++.+.+ ++++. .+ .|+..++..+.....+..
T Consensus 331 ~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~ 410 (740)
T 4a5s_A 331 NSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCE 410 (740)
T ss_dssp SEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTT
T ss_pred CEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccc
Confidence 8776 55533 2 378889988766554333555565544 554444 44443 23 455556555544334431
Q ss_pred --cCCcceEEEEEcCCCCEEEEEeCC---CcEEEEe
Q 001349 1062 --GTSGKVQCMALDDNEEFLVIGTSD---GRIQAWG 1092 (1094)
Q Consensus 1062 --~h~~~I~~l~~Spdg~~L~sgs~D---G~I~iWd 1092 (1094)
+....+....||||+++++..... ..+.+++
T Consensus 411 ~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~ 446 (740)
T 4a5s_A 411 LNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHS 446 (740)
T ss_dssp TSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEE
T ss_pred cCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEE
Confidence 123568899999999987654433 2455554
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-12 Score=146.89 Aligned_cols=227 Identities=12% Similarity=0.079 Sum_probs=154.0
Q ss_pred CeEEEEecCCCcceeEEEec-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc--eEEEEecccCccceeeeecCc
Q 001349 833 GTIKVWTGRGSILHLIQQIR-EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE--IHCVQVHDIKDQIQNLAVSNS 909 (1094)
Q Consensus 833 g~I~vWd~~t~~~~~~~~l~-~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~--~~~~~~~~~~~~V~~v~~~~~ 909 (1094)
++|.+||..++ +.+..+. ++-.....++|+|+|+++++.+.++.|++||..... ...+........-.
T Consensus 69 ~~i~~~d~~~g--~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~------- 139 (329)
T 3fvz_A 69 DTILVIDPNNA--EILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQ------- 139 (329)
T ss_dssp CCEEEECTTTC--CEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCST-------
T ss_pred CcEEEEECCCC--eEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCc-------
Confidence 58999999988 4555543 455678999999999999998889999999987642 11111100000000
Q ss_pred eEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC--CEEEEEE--cCCeEEEEECCCCceeEEecccee----ecCCC
Q 001349 910 ILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ--GKVYCGC--QDGAIQEIDLATGTFATIQTGHRK----LLGKA 981 (1094)
Q Consensus 910 ~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~--~~l~sgs--~Dg~I~iwDl~~~~~~~~~~~~~~----~~~h~ 981 (1094)
..-..+..+++++ +.++++. .++.|++|| .++.....+..... ..++-
T Consensus 140 -----------------------~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~ 195 (329)
T 3fvz_A 140 -----------------------NHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQF 195 (329)
T ss_dssp -----------------------TCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEE
T ss_pred -----------------------cccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCccc
Confidence 0011233333432 2344443 478888888 45665543321100 01222
Q ss_pred CCeEEEEEeCC-ccEEEEEECCCCEEEEEECCCCeEEEEec---CCCCEEEEEEeCCEEEEEE--------cCCeEEEEE
Q 001349 982 NPVHALQVHNG-LVYTASTSLDGAAVKMWSTSNYNMVGSLP---TLSEVRAMVVSSELVYLGC--------KGGTVEIWD 1049 (1094)
Q Consensus 982 ~~V~sl~fs~~-~~~las~s~Dg~~I~iwd~~~~~~~~~~~---~~~~v~~l~~spd~l~sgs--------~dg~I~vwd 1049 (1094)
.....++++++ +.++++...+ +.|++||..+++.+..+. +...+..++++|..++... .++.|++||
T Consensus 196 ~~p~gia~d~~~g~l~v~d~~~-~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~ 274 (329)
T 3fvz_A 196 SVPHSLALVPHLDQLCVADREN-GRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMN 274 (329)
T ss_dssp SCEEEEEEETTTTEEEEEETTT-TEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEE
T ss_pred CCCcEEEEECCCCEEEEEECCC-CEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEE
Confidence 45889999998 6666666555 499999999899888885 4567889999997444432 245899999
Q ss_pred CCCCcEEEEec--ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1050 QKRQIRIETLQ--TGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1050 ~~t~~~~~~l~--~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
..+++.+..+. .++...+.+++++|+|.++++...+++|++|++
T Consensus 275 ~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~ 320 (329)
T 3fvz_A 275 FSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTL 320 (329)
T ss_dssp TTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred cCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence 99999998873 256667999999999988888889999999986
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=8.3e-14 Score=175.82 Aligned_cols=238 Identities=12% Similarity=0.104 Sum_probs=158.4
Q ss_pred CcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCC-----eEEEEEecCCCEEEEEeCC---------C
Q 001349 814 GKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKA-----VTGLAILQSGEMLYSGSLD---------K 877 (1094)
Q Consensus 814 ~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~-----V~sv~fspdg~~LaSgs~D---------g 877 (1094)
....++.|+|| +++++ ||+|++||+.++ .+...+.+|... ...+.|||||++|+.++.+ +
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYG--NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTC--CEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCC--ceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 34568999997 66665 999999999999 566667777643 2447899999999999886 5
Q ss_pred cEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeE
Q 001349 878 TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAI 957 (1094)
Q Consensus 878 tI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I 957 (1094)
.+.+||+.+++.. ....+...+.... |||||+.++ .+ .|+.|
T Consensus 93 ~~~~~d~~~~~~~--~l~~~~~~~~~~~-------~SPdG~~la----------------------------~~-~~~~i 134 (740)
T 4a5s_A 93 SYDIYDLNKRQLI--TEERIPNNTQWVT-------WSPVGHKLA----------------------------YV-WNNDI 134 (740)
T ss_dssp EEEEEETTTTEEC--CSSCCCTTEEEEE-------ECSSTTCEE----------------------------EE-ETTEE
T ss_pred EEEEEECCCCcEE--EcccCCCcceeeE-------ECCCCCEEE----------------------------EE-ECCeE
Confidence 5679999998533 2333445566665 999999743 33 35778
Q ss_pred EEEECCCCceeEEec-cc--eeecCCC---------CCeEEEEEeCCccEEEEEECCCC---------------------
Q 001349 958 QEIDLATGTFATIQT-GH--RKLLGKA---------NPVHALQVHNGLVYTASTSLDGA--------------------- 1004 (1094)
Q Consensus 958 ~iwDl~~~~~~~~~~-~~--~~~~~h~---------~~V~sl~fs~~~~~las~s~Dg~--------------------- 1004 (1094)
++||+.++....... +. ..+.++. .....+.|+||+..++..+.|+.
T Consensus 135 ~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~ 214 (740)
T 4a5s_A 135 YVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTV 214 (740)
T ss_dssp EEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEE
T ss_pred EEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcce
Confidence 888888776543211 10 0122222 12235889999998888764332
Q ss_pred --------------EEEEEECCC---C---eEEEEec------CCCCEEEEEEeCC--EEEEEEc----CCeEEEEECCC
Q 001349 1005 --------------AVKMWSTSN---Y---NMVGSLP------TLSEVRAMVVSSE--LVYLGCK----GGTVEIWDQKR 1052 (1094)
Q Consensus 1005 --------------~I~iwd~~~---~---~~~~~~~------~~~~v~~l~~spd--~l~sgs~----dg~I~vwd~~t 1052 (1094)
.|++||+.+ + +...... +...+..++|+|| .++.... +..|++||+.+
T Consensus 215 ~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t 294 (740)
T 4a5s_A 215 RVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE 294 (740)
T ss_dssp EEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred eecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence 588899988 7 3332221 4566889999999 3443322 34799999998
Q ss_pred Cc----EE---EEecccCCcceE-----EEEEcCCCCEEE-EEe-CCC--cEEEEeC
Q 001349 1053 QI----RI---ETLQTGTSGKVQ-----CMALDDNEEFLV-IGT-SDG--RIQAWGL 1093 (1094)
Q Consensus 1053 ~~----~~---~~l~~~h~~~I~-----~l~~Spdg~~L~-sgs-~DG--~I~iWdl 1093 (1094)
++ +. ..+..+|.+.|. ...|+|||+.|+ ..+ .+| .|++||+
T Consensus 295 g~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~ 351 (740)
T 4a5s_A 295 SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQI 351 (740)
T ss_dssp TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEET
T ss_pred CccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEEC
Confidence 87 21 111234655554 789999999877 665 344 5777765
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-12 Score=150.38 Aligned_cols=241 Identities=11% Similarity=0.106 Sum_probs=154.3
Q ss_pred EEEEEECC--CeEEEEec--CCCcceeEEEec-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC-CCceEEEEecccC
Q 001349 825 KIFSGHSD--GTIKVWTG--RGSILHLIQQIR-EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIG-NEEIHCVQVHDIK 898 (1094)
Q Consensus 825 ~LaSgs~D--g~I~vWd~--~t~~~~~~~~l~-~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~-~~~~~~~~~~~~~ 898 (1094)
.++.|++. +.|.+|++ .++....+.... ++...+..++|+|||++|++++.+ +|.+|++. +++..........
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 46667664 57888765 466433333322 244568899999999999999988 99999997 7754332222111
Q ss_pred ccceeeeecCceEEEeeCCCeEEEEEe-CCeEEEEcCCCCceEEEEeCCEEEEEE----cCCeEEEEECC-CCceeEEec
Q 001349 899 DQIQNLAVSNSILCFIPQGAGIKVHLR-NGKTKLLNSSKYPKCLALVQGKVYCGC----QDGAIQEIDLA-TGTFATIQT 972 (1094)
Q Consensus 899 ~~V~~v~~~~~~~~fspdg~~l~~~~~-~g~i~l~~~~~~v~~l~~s~~~l~sgs----~Dg~I~iwDl~-~~~~~~~~~ 972 (1094)
..+..+. |+|||+.+.+... .+.. ...+. .+|.+.+|++. +++......
T Consensus 83 g~~~~~~-------~spdg~~l~~~~~~~~~~------------------~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~ 137 (365)
T 1jof_A 83 GHPRAND-------ADTNTRAIFLLAAKQPPY------------------AVYANPFYKFAGYGNVFSVSETGKLEKNVQ 137 (365)
T ss_dssp SSGGGGC-------TTSCCEEEEEEECSSTTC------------------CEEEEEESSSCCEEEEEEECTTCCEEEEEE
T ss_pred CCCccEE-------ECCCCCEEEEEEecCCcc------------------eeccceeecCCceEEEEccCCCCcCcceEe
Confidence 2233344 8888885321111 1100 00111 68899999997 455432211
Q ss_pred cceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECC-CCeEE--EEec---CCCCEEEEEEeCC--EEEEEEc-CC
Q 001349 973 GHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS-NYNMV--GSLP---TLSEVRAMVVSSE--LVYLGCK-GG 1043 (1094)
Q Consensus 973 ~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~-~~~~~--~~~~---~~~~v~~l~~spd--~l~sgs~-dg 1043 (1094)
. ....+...+.+++|+|++.+++++...+..|++||+. +++.. ..+. +...+..++|+|| ++++++. ++
T Consensus 138 ~--~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~ 215 (365)
T 1jof_A 138 N--YEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGN 215 (365)
T ss_dssp E--EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred e--EEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCC
Confidence 0 0012456799999999998887776544599999998 67643 3343 3567999999998 6777664 78
Q ss_pred eEEEEECC--CCcEE---EEec---c---cCCc------ceEEEE-EcCCCCEEEEEeCCC------cEEEEeC
Q 001349 1044 TVEIWDQK--RQIRI---ETLQ---T---GTSG------KVQCMA-LDDNEEFLVIGTSDG------RIQAWGL 1093 (1094)
Q Consensus 1044 ~I~vwd~~--t~~~~---~~l~---~---~h~~------~I~~l~-~Spdg~~L~sgs~DG------~I~iWdl 1093 (1094)
.|.+|++. +++.. ..+. . +|.. .+..++ |+|||++|++++.++ +|.+|++
T Consensus 216 ~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~ 289 (365)
T 1jof_A 216 RICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKL 289 (365)
T ss_dssp EEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred eEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEE
Confidence 99999765 56542 2221 1 1222 588999 999999988776432 8999987
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.53 E-value=3.9e-12 Score=143.56 Aligned_cols=267 Identities=10% Similarity=0.010 Sum_probs=172.1
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccC
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHT 855 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~ 855 (1094)
...+.+++..++..+.++.++.|. ......+..+...+.+++|+++ +++++..++.|.+||..++. .......+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~--~~~~~~~~~ 86 (333)
T 2dg1_A 10 TLFYSGKSNSAVPIISESELQTIT-AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE--IKRPFVSHK 86 (333)
T ss_dssp BCCSCGGGGCSSCCCCGGGSCEEE-CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC--EEEEEECSS
T ss_pred eeeecCCccceeEEeecccCcccc-cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc--EEEEeeCCC
Confidence 344555566666667888999993 3444555667778899999986 66678889999999999883 333333567
Q ss_pred CCeEEEEEecCCCEEEEEeCC----CcEEEEECCCCceEEEEe-cccCccceeeeecCceEEEeeCCCeEEEEEeCCeEE
Q 001349 856 KAVTGLAILQSGEMLYSGSLD----KTARVWSIGNEEIHCVQV-HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK 930 (1094)
Q Consensus 856 ~~V~sv~fspdg~~LaSgs~D----gtI~vWdi~~~~~~~~~~-~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~ 930 (1094)
..+.+++|+++|+++++...+ +.|.+||..++....... ......+..+. ++|+|+.++....+..
T Consensus 87 ~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~-------~d~~g~l~v~~~~~~~-- 157 (333)
T 2dg1_A 87 ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMV-------FDSKGGFYFTDFRGYS-- 157 (333)
T ss_dssp SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEE-------ECTTSCEEEEECCCBT--
T ss_pred CCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceE-------ECCCCCEEEEeccccc--
Confidence 889999999999988887776 689999998876442221 11122334443 6777653221110000
Q ss_pred EEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEE-EEECCCCEEEEE
Q 001349 931 LLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTA-STSLDGAAVKMW 1009 (1094)
Q Consensus 931 l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~la-s~s~Dg~~I~iw 1009 (1094)
....+.|..||..+++..... .+...+..++|++++.++. +.+.+ +.|.+|
T Consensus 158 --------------------~~~~~~l~~~~~~~~~~~~~~-------~~~~~~~~i~~~~dg~~l~v~~~~~-~~i~~~ 209 (333)
T 2dg1_A 158 --------------------TNPLGGVYYVSPDFRTVTPII-------QNISVANGIALSTDEKVLWVTETTA-NRLHRI 209 (333)
T ss_dssp --------------------TBCCEEEEEECTTSCCEEEEE-------EEESSEEEEEECTTSSEEEEEEGGG-TEEEEE
T ss_pred --------------------cCCCceEEEEeCCCCEEEEee-------cCCCcccceEECCCCCEEEEEeCCC-CeEEEE
Confidence 001345666776655543221 1123578899999987544 43344 489999
Q ss_pred ECCC-CeEEEE--------ecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCC------cceEEEEE
Q 001349 1010 STSN-YNMVGS--------LPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTS------GKVQCMAL 1072 (1094)
Q Consensus 1010 d~~~-~~~~~~--------~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~------~~I~~l~~ 1072 (1094)
|..+ +..... +.....+..++++++ +.++...++.|.+||. +++.+..+. .+. ..+.+++|
T Consensus 210 d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~-~~~~~~g~~~~~~~~~~ 287 (333)
T 2dg1_A 210 ALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQIL-IPGRDEGHMLRSTHPQF 287 (333)
T ss_dssp EECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEE-CTTGGGTCSCBCCEEEE
T ss_pred EecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEE-cCCCccccccCcceEEE
Confidence 9963 332211 112246788999987 4444456789999998 566666663 222 26899999
Q ss_pred cCCCCEEEEEeCCC
Q 001349 1073 DDNEEFLVIGTSDG 1086 (1094)
Q Consensus 1073 Spdg~~L~sgs~DG 1086 (1094)
+||++.|+.++.+|
T Consensus 288 ~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 288 IPGTNQLIICSNDI 301 (333)
T ss_dssp CTTSCEEEEEEECG
T ss_pred CCCCCEEEEEeCcc
Confidence 99988777666653
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=7.1e-12 Score=138.18 Aligned_cols=236 Identities=11% Similarity=0.118 Sum_probs=159.8
Q ss_pred ccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEec------ccCCCeEEEEEe-cCCCEEEEEeC-CCcE
Q 001349 810 SSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIR------EHTKAVTGLAIL-QSGEMLYSGSL-DKTA 879 (1094)
Q Consensus 810 ~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~------~H~~~V~sv~fs-pdg~~LaSgs~-DgtI 879 (1094)
.+|-..+.+++++++ ++++...++.|.+||..+. .+..+. +|...+..++++ +++.++++... ++.|
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~---~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i 102 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR---FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQI 102 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSC---EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCCCc---EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEE
Confidence 356678999999986 6777788999999998743 445443 345678999995 67777666643 8899
Q ss_pred EEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEE
Q 001349 880 RVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQE 959 (1094)
Q Consensus 880 ~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~i 959 (1094)
++||.. ++............+..++ ++++|+. +++...++.|.+
T Consensus 103 ~~~d~~-g~~~~~~~~~~~~~~~~i~-------~~~~g~l----------------------------~v~~~~~~~i~~ 146 (286)
T 1q7f_A 103 QIYNQY-GQFVRKFGATILQHPRGVT-------VDNKGRI----------------------------IVVECKVMRVII 146 (286)
T ss_dssp EEECTT-SCEEEEECTTTCSCEEEEE-------ECTTSCE----------------------------EEEETTTTEEEE
T ss_pred EEECCC-CcEEEEecCccCCCceEEE-------EeCCCCE----------------------------EEEECCCCEEEE
Confidence 999944 4322111111112233333 6666652 334445778999
Q ss_pred EECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCC---CCEEEEEEeCC--
Q 001349 960 IDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTL---SEVRAMVVSSE-- 1034 (1094)
Q Consensus 960 wDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~---~~v~~l~~spd-- 1034 (1094)
||.. +.....+. ..++...+..+++++++.+.++...++ .|++||. ++..+..+... ..+..++++++
T Consensus 147 ~~~~-g~~~~~~~----~~~~~~~p~~i~~~~~g~l~v~~~~~~-~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~ 219 (286)
T 1q7f_A 147 FDQN-GNVLHKFG----CSKHLEFPNGVVVNDKQEIFISDNRAH-CVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGE 219 (286)
T ss_dssp ECTT-SCEEEEEE----CTTTCSSEEEEEECSSSEEEEEEGGGT-EEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCC
T ss_pred EcCC-CCEEEEeC----CCCccCCcEEEEECCCCCEEEEECCCC-EEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCC
Confidence 9864 44443221 113445689999999988777766664 9999997 45666666532 57899999988
Q ss_pred EEEEEEcCC-eEEEEECCCCcEEEEeccc-CCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1035 LVYLGCKGG-TVEIWDQKRQIRIETLQTG-TSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1035 ~l~sgs~dg-~I~vwd~~t~~~~~~l~~~-h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
++++...++ .|.+||. +++.+..+..+ ....+.+++|+|+|+++++ +.|++|++|++
T Consensus 220 l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~ 278 (286)
T 1q7f_A 220 ILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRY 278 (286)
T ss_dssp EEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEEC
T ss_pred EEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEc
Confidence 455555565 9999995 56666666322 1224789999999987776 67999999986
|
| >3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-14 Score=139.63 Aligned_cols=67 Identities=16% Similarity=0.257 Sum_probs=60.8
Q ss_pred CceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCC-CCCCChhHHHHHHHHHHHH
Q 001349 162 KDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSS-TKLPKTNYVLKRLIASWQE 229 (1094)
Q Consensus 162 ~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~-~~~~~pN~~l~~~i~~~~~ 229 (1094)
+++.||||+++|.+||+++|||+||+.||..|+..+...||.||+.+.. ..+. +|..|++++++|..
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~-~n~~l~~~i~~~~p 118 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQ-VNQPLQTVLNQLFP 118 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCC-CCHHHHHHHHHHST
T ss_pred cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCC-CCHHHHHHHHHHcc
Confidence 3899999999999999999999999999999998656689999999987 5665 99999999998864
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=5.8e-12 Score=144.61 Aligned_cols=251 Identities=12% Similarity=0.201 Sum_probs=164.6
Q ss_pred CCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEe----------CCCcEEEEECCCCceE-EEEecccCc
Q 001349 831 SDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGS----------LDKTARVWSIGNEEIH-CVQVHDIKD 899 (1094)
Q Consensus 831 ~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs----------~DgtI~vWdi~~~~~~-~~~~~~~~~ 899 (1094)
.|++|.+||..++ +.+.++..+..+ .++|+|||+++++++ .+++|.+||..+++.. .+......
T Consensus 29 ~d~~v~v~D~~t~--~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~- 103 (361)
T 2oiz_A 29 TESRVHVYDYTNG--KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR- 103 (361)
T ss_dssp GGCEEEEEETTTC--CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB-
T ss_pred ccCeEEEEECCCC--eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc-
Confidence 4789999999998 567777766555 899999999999986 3678999999887532 22221100
Q ss_pred cceeeeecCceEEEeeCCCeEEEEEe--CCeEEEEcCCCCc--eE---------EEEeC---CEEEEEEcCCeEEEEECC
Q 001349 900 QIQNLAVSNSILCFIPQGAGIKVHLR--NGKTKLLNSSKYP--KC---------LALVQ---GKVYCGCQDGAIQEIDLA 963 (1094)
Q Consensus 900 ~V~~v~~~~~~~~fspdg~~l~~~~~--~g~i~l~~~~~~v--~~---------l~~s~---~~l~sgs~Dg~I~iwDl~ 963 (1094)
. .....+..+.|+|||+++.+.+. ++.+.+|+....- .. +.+.+ ..+++.+.||.+.+|+..
T Consensus 104 -~-~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~ 181 (361)
T 2oiz_A 104 -V-QGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLG 181 (361)
T ss_dssp -C-CBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEEC
T ss_pred -c-ccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEEC
Confidence 0 00012334459999999998876 4789999875431 11 22222 357889999999999986
Q ss_pred C-CceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCe--EEEEecC-----------CCCEEEE
Q 001349 964 T-GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN--MVGSLPT-----------LSEVRAM 1029 (1094)
Q Consensus 964 ~-~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~--~~~~~~~-----------~~~v~~l 1029 (1094)
. ++..........+..+..++ .+.+++++..++..+.++ .|.+||+.... ....+.. ......+
T Consensus 182 ~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~-~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~ 259 (361)
T 2oiz_A 182 EDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYG-NVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLV 259 (361)
T ss_dssp TTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTS-EEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCE
T ss_pred CCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCC-eEEEEEecCCCceecccccccCccccccccccCCeeEE
Confidence 5 55431111001122222222 223345555555556665 89999987543 2222210 0111126
Q ss_pred EEeCC--EEEEEEc-----------CCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1030 VVSSE--LVYLGCK-----------GGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1030 ~~spd--~l~sgs~-----------dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
+++++ .++++.. .+.|.+||..+++.+.++. .+. +.+++|+|||++|++++. ++|.+||..
T Consensus 260 a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~-~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~ 333 (361)
T 2oiz_A 260 GLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIP-GRD--ALSMTIDQQRNLMLTLDG-GNVNVYDIS 333 (361)
T ss_dssp EEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEE-CTT--CCEEEEETTTTEEEEECS-SCEEEEECS
T ss_pred EEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEe-cCC--eeEEEECCCCCEEEEeCC-CeEEEEECC
Confidence 88887 5555543 3589999999999999995 444 999999999999998887 999999963
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-12 Score=150.69 Aligned_cols=272 Identities=7% Similarity=-0.072 Sum_probs=167.0
Q ss_pred ccccccccCcEEEEeeCC---CCeEEEeCCcc-eeecccCCCcE-EEEEEeCC--EEEEEECCCeEEEEecCCCcceeEE
Q 001349 777 KYSPLAFEMVKVLSNGHD---SSADFWNHREL-VHVDSSENGKV-LSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQ 849 (1094)
Q Consensus 777 ~~~~~~~d~~~l~s~s~d---g~I~vWd~~~~-~~~~~~h~~~V-~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~ 849 (1094)
....+++||++++..... ..|.+|+.... ...+..+...+ ..+.|+|| .|+.++.++.|++||+.++. ...
T Consensus 39 ~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~--~~~ 116 (396)
T 3c5m_A 39 YQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLE--EQV 116 (396)
T ss_dssp TSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC--EEE
T ss_pred ecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCC--cEE
Confidence 345688899998776543 35677787632 22233333333 34789997 89899999999999999884 333
Q ss_pred EecccCCCeEE-------------------EEEecCCCEEEEE-----eCCCcEEEEECCCCceEEEEecccCccceeee
Q 001349 850 QIREHTKAVTG-------------------LAILQSGEMLYSG-----SLDKTARVWSIGNEEIHCVQVHDIKDQIQNLA 905 (1094)
Q Consensus 850 ~l~~H~~~V~s-------------------v~fspdg~~LaSg-----s~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~ 905 (1094)
....+...... +.|+|+++.++.+ ..+..|.+||+.+++...+. .....+..+.
T Consensus 117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~--~~~~~~~~~~ 194 (396)
T 3c5m_A 117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH--QDTAWLGHPI 194 (396)
T ss_dssp EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE--EESSCEEEEE
T ss_pred EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec--cCCcccccce
Confidence 33334443222 3456777766544 35668999999887644433 2233444444
Q ss_pred ecCceEEEee-CCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCC--CC
Q 001349 906 VSNSILCFIP-QGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGK--AN 982 (1094)
Q Consensus 906 ~~~~~~~fsp-dg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h--~~ 982 (1094)
|+| +|+.++....++. ......|.+||+.++.... +..+ ..
T Consensus 195 -------~sp~dg~~l~~~~~~~~----------------------~~~~~~l~~~d~~~~~~~~-------l~~~~~~~ 238 (396)
T 3c5m_A 195 -------YRPFDDSTVGFCHEGPH----------------------DLVDARMWLVNEDGSNVRK-------IKEHAEGE 238 (396)
T ss_dssp -------EETTEEEEEEEEECSCS----------------------SSCSCCCEEEETTSCCCEE-------SSCCCTTE
T ss_pred -------ECCCCCCEEEEEecCCC----------------------CCCCceEEEEECCCCceeE-------eeccCCCc
Confidence 777 5654432211000 0001468888987665331 1122 23
Q ss_pred CeEEEEEeCCccEEEEEECCC----CEEEEEECCCCeEEEEecCCCCEEEEEEeC-C--EEEEEE---------------
Q 001349 983 PVHALQVHNGLVYTASTSLDG----AAVKMWSTSNYNMVGSLPTLSEVRAMVVSS-E--LVYLGC--------------- 1040 (1094)
Q Consensus 983 ~V~sl~fs~~~~~las~s~Dg----~~I~iwd~~~~~~~~~~~~~~~v~~l~~sp-d--~l~sgs--------------- 1040 (1094)
.+..+.|+|++.+++..+.++ +.|.+||+.+++......... .. +.|+| | ++++++
T Consensus 239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~ 316 (396)
T 3c5m_A 239 SCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNI 316 (396)
T ss_dssp EEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CC
T ss_pred cccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeecccccccc
Confidence 577899999998766654431 259999998886544332222 33 88998 7 555543
Q ss_pred -cCCeEEEEECCCCcEEEEecccCCc-----------ceEEEEEcCCCCEEEEEeC-CCcEEEEe
Q 001349 1041 -KGGTVEIWDQKRQIRIETLQTGTSG-----------KVQCMALDDNEEFLVIGTS-DGRIQAWG 1092 (1094)
Q Consensus 1041 -~dg~I~vwd~~t~~~~~~l~~~h~~-----------~I~~l~~Spdg~~L~sgs~-DG~I~iWd 1092 (1094)
.++.|++||+.+++.. .+. .+.. .+..++|+|||+.|+.++. +|...+|.
T Consensus 317 ~~~~~i~~~d~~~~~~~-~l~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~ 379 (396)
T 3c5m_A 317 ENDPFLYVLNTKAKSAQ-KLC-KHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYI 379 (396)
T ss_dssp CCCCEEEEEETTTTBCC-EEE-ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred CCCCcEEEEecccCceE-Ecc-CCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEE
Confidence 3478999999888753 332 3333 2567899999998877664 56666664
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.4e-11 Score=152.51 Aligned_cols=275 Identities=14% Similarity=0.071 Sum_probs=174.0
Q ss_pred cccccccCcEEEEeeCCC-C--eEEEeCC----cce------eecccCCCcEEEEEEeCC--EEEEEECC-C----eEEE
Q 001349 778 YSPLAFEMVKVLSNGHDS-S--ADFWNHR----ELV------HVDSSENGKVLSIACFRD--KIFSGHSD-G----TIKV 837 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg-~--I~vWd~~----~~~------~~~~~h~~~V~~l~fspd--~LaSgs~D-g----~I~v 837 (1094)
.....++|.+++....++ . -.+|-.. ... ....+|+..+..++|||| +|+.++.+ | +|++
T Consensus 76 ~~~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v 155 (710)
T 2xdw_A 76 YSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKF 155 (710)
T ss_dssp ECCCEEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEE
T ss_pred CCCCEEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEE
Confidence 333458899877654432 1 2455442 111 112235557899999997 66655443 3 8999
Q ss_pred EecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCc----------------EEEEECCCCceE--EEEe-cccC
Q 001349 838 WTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKT----------------ARVWSIGNEEIH--CVQV-HDIK 898 (1094)
Q Consensus 838 Wd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~Dgt----------------I~vWdi~~~~~~--~~~~-~~~~ 898 (1094)
||+.++ ..+.....+. .+..++|+|||+.|+.++.|+. |++|++.+++.. .+.. ..+.
T Consensus 156 ~d~~tg--~~~~~~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~ 232 (710)
T 2xdw_A 156 MKVDGA--KELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEP 232 (710)
T ss_dssp EETTTT--EEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCT
T ss_pred EECCCC--CCCcccccCc-ccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCC
Confidence 999998 4443222222 3678999999999999998876 999999887522 2211 1123
Q ss_pred ccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCC------Cc-eeEEe
Q 001349 899 DQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT------GT-FATIQ 971 (1094)
Q Consensus 899 ~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~------~~-~~~~~ 971 (1094)
..+..+. |+|||+.+++....+. ..+..|.+||+.+ +. ..
T Consensus 233 ~~~~~~~-------~SpDg~~l~~~~~~~~-----------------------~~~~~l~~~d~~~~~~~~~~~~~~--- 279 (710)
T 2xdw_A 233 KWMGGAE-------LSDDGRYVLLSIREGC-----------------------DPVNRLWYCDLQQESNGITGILKW--- 279 (710)
T ss_dssp TCEEEEE-------ECTTSCEEEEEEECSS-----------------------SSCCEEEEEEGGGSSSSSCSSCCC---
T ss_pred eEEEEEE-------EcCCCCEEEEEEEccC-----------------------CCccEEEEEECcccccccCCccce---
Confidence 3344444 8999997654432210 0156889999876 42 12
Q ss_pred ccceeecCCCCCeEEEEEeCCccEEEEEECCC---CEEEEEECCCCeE---EEEecCCC--CEEEEEEeCC--EEEEEEc
Q 001349 972 TGHRKLLGKANPVHALQVHNGLVYTASTSLDG---AAVKMWSTSNYNM---VGSLPTLS--EVRAMVVSSE--LVYLGCK 1041 (1094)
Q Consensus 972 ~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg---~~I~iwd~~~~~~---~~~~~~~~--~v~~l~~spd--~l~sgs~ 1041 (1094)
..+..+...+.. .|++++..++..+..+ ..|.+||+.++.. ...+.+.. .+..+.|+++ +++++..
T Consensus 280 ---~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~ 355 (710)
T 2xdw_A 280 ---VKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLH 355 (710)
T ss_dssp ---EEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEE
T ss_pred ---EEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEE
Confidence 233444445554 3666666555554432 3799999987642 22233433 6888999844 6677777
Q ss_pred CC--eEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEE-e---CCCcEEEEeC
Q 001349 1042 GG--TVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIG-T---SDGRIQAWGL 1093 (1094)
Q Consensus 1042 dg--~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sg-s---~DG~I~iWdl 1093 (1094)
++ .|++||+.+|+.+..+. .+.+.|..+.++|+++.++.. + ..++|+.||+
T Consensus 356 ~g~~~l~~~~~~~g~~~~~l~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 412 (710)
T 2xdw_A 356 DVKNTLQLHDLATGALLKIFP-LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL 412 (710)
T ss_dssp TTEEEEEEEETTTCCEEEEEC-CCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred CCEEEEEEEECCCCCEEEecC-CCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 87 46677887888777774 567789999999999766533 2 2478999986
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.46 E-value=3.9e-12 Score=158.08 Aligned_cols=278 Identities=9% Similarity=0.027 Sum_probs=173.9
Q ss_pred hccccccccccCcEEEEe--eCCCCeEEEeCC--cceeecccCCCcEE---------EEEEe--CC--E-EEEEEC-CCe
Q 001349 774 ELRKYSPLAFEMVKVLSN--GHDSSADFWNHR--ELVHVDSSENGKVL---------SIACF--RD--K-IFSGHS-DGT 834 (1094)
Q Consensus 774 ~~~~~~~~~~d~~~l~s~--s~dg~I~vWd~~--~~~~~~~~h~~~V~---------~l~fs--pd--~-LaSgs~-Dg~ 834 (1094)
.......++.+..++++. +.++...||... .....+..|...+. ...|+ || . |+.++. ++.
T Consensus 24 ~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~ 103 (662)
T 3azo_A 24 GRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQR 103 (662)
T ss_dssp SCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCC
T ss_pred CccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCe
Confidence 333333344444455555 457889999853 33445566666666 66676 65 6 665544 567
Q ss_pred EEEEecC--C-CcceeEEEecc-----cCCCeEEEEEecCCCEEEEEeCC----------CcEEEEECCC------CceE
Q 001349 835 IKVWTGR--G-SILHLIQQIRE-----HTKAVTGLAILQSGEMLYSGSLD----------KTARVWSIGN------EEIH 890 (1094)
Q Consensus 835 I~vWd~~--t-~~~~~~~~l~~-----H~~~V~sv~fspdg~~LaSgs~D----------gtI~vWdi~~------~~~~ 890 (1094)
|.+|++. + +. ...+.. |...+.+++|+|||+.|++++.| .+|++||+.+ ++..
T Consensus 104 l~~~~~~~~g~~~---~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 180 (662)
T 3azo_A 104 LYAFEPDAPGGAV---PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR 180 (662)
T ss_dssp EEEECTTSTTCCC---CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE
T ss_pred EEEEcCCCCCCCC---CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee
Confidence 8888876 3 52 334444 67789999999999999999887 5899999988 6543
Q ss_pred EEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECC-CC---c
Q 001349 891 CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA-TG---T 966 (1094)
Q Consensus 891 ~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~-~~---~ 966 (1094)
.+. ......+..+. |+|||+.++...+++....| ....|.+||+. ++ .
T Consensus 181 ~l~-~~~~~~~~~~~-------~SpDG~~la~~~~~~~~~~~--------------------~~~~i~~~d~~~~g~~~~ 232 (662)
T 3azo_A 181 ELS-DDAHRFVTGPR-------LSPDGRQAVWLAWDHPRMPW--------------------EGTELKTARVTEDGRFAD 232 (662)
T ss_dssp ESS-CSCSSEECCCE-------ECTTSSEEEEEEECTTCCTT--------------------TCEEEEEEEECTTSCEEE
T ss_pred EEE-ecCCCcccCce-------ECCCCCEEEEEECCCCCCCC--------------------CCcEEEEEEECCCCcccc
Confidence 222 02233444444 99999986654433210000 12468999998 56 2
Q ss_pred eeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCC-EEEEEECCCCeEEEEecCCCC---------EEEEEEeCC--
Q 001349 967 FATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGA-AVKMWSTSNYNMVGSLPTLSE---------VRAMVVSSE-- 1034 (1094)
Q Consensus 967 ~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~-~I~iwd~~~~~~~~~~~~~~~---------v~~l~~spd-- 1034 (1094)
.. ....+|...+..+.|+||+.+++++..++. .|.+||..+++......+... +..++|+++
T Consensus 233 ~~------~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~ 306 (662)
T 3azo_A 233 TR------TLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGL 306 (662)
T ss_dssp EE------EEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSC
T ss_pred cE------EeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCE
Confidence 22 122345678999999999987777665531 567777767765544333221 457888876
Q ss_pred EEEEEEcCCeEEEE--ECCCCcEEEEecccCCcceEEE-EEcCCCCEEEEEeCCCcEEEE
Q 001349 1035 LVYLGCKGGTVEIW--DQKRQIRIETLQTGTSGKVQCM-ALDDNEEFLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1035 ~l~sgs~dg~I~vw--d~~t~~~~~~l~~~h~~~I~~l-~~Spdg~~L~sgs~DG~I~iW 1091 (1094)
++++++. +.++|| |..+++ +..+ ..|.+.+..+ +++.+.-++++++.+....+|
T Consensus 307 ~~~~~~~-~~~~l~~~d~~~~~-~~~l-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 307 IAVVHGK-GAAVLGILDPESGE-LVDA-AGPWTEWAATLTVSGTRAVGVAASPRTAYEVV 363 (662)
T ss_dssp EEEEEBS-SSCEEEEEETTTTE-EEEC-CSSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred EEEEEEc-CccEEEEEECCCCc-EEEe-cCCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence 7777888 999999 665565 5666 4677777777 554333344455555544444
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-12 Score=161.53 Aligned_cols=250 Identities=10% Similarity=-0.007 Sum_probs=167.4
Q ss_pred eecccCCCcEEEEEEeCC--EEEEE--ECCCeEEEEecCCCcceeEEEecccCCCeE---------EEEEe--cCCCE-E
Q 001349 807 HVDSSENGKVLSIACFRD--KIFSG--HSDGTIKVWTGRGSILHLIQQIREHTKAVT---------GLAIL--QSGEM-L 870 (1094)
Q Consensus 807 ~~~~~h~~~V~~l~fspd--~LaSg--s~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~---------sv~fs--pdg~~-L 870 (1094)
..+.+|...|..++|+++ +++++ +.++...||....+ .....+..|...+. ...|+ |||+. |
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~l 94 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD--GAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLL 94 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT--SCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCC--CCcceeCCCCccccccccccCCccceeeeecCCCeEE
Confidence 456679999999999998 44455 45889999996444 34566777776666 66676 99998 7
Q ss_pred EEEeC-CCcEEEEECC--C-CceEEEEecc---cCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEE
Q 001349 871 YSGSL-DKTARVWSIG--N-EEIHCVQVHD---IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLAL 943 (1094)
Q Consensus 871 aSgs~-DgtI~vWdi~--~-~~~~~~~~~~---~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~ 943 (1094)
+.++. +..|.+|++. + +....+.... +...+..+. |+|||+.++....+..- .
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~-------~spDg~~l~~~~~~~~~-----~-------- 154 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPV-------LLPERGEVWCMAEEFTG-----E-------- 154 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEE-------EETTTTEEEEEEEEECS-----S--------
T ss_pred EEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcE-------ECCCCCEEEEEEecccC-----C--------
Confidence 76654 5667777776 3 4433322211 233444444 99999976544332100 0
Q ss_pred eCCEEEEEEcCCeEEEEECCC------CceeEEeccceeec-CCCCCeEEEEEeCCccEEEEEECCC-------CEEEEE
Q 001349 944 VQGKVYCGCQDGAIQEIDLAT------GTFATIQTGHRKLL-GKANPVHALQVHNGLVYTASTSLDG-------AAVKMW 1009 (1094)
Q Consensus 944 s~~~l~sgs~Dg~I~iwDl~~------~~~~~~~~~~~~~~-~h~~~V~sl~fs~~~~~las~s~Dg-------~~I~iw 1009 (1094)
.+ ......|.+||+.+ +... .+. .+...+..+.|+||+.+++..+.++ ..|.+|
T Consensus 155 ~~-----~~~~~~i~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~ 222 (662)
T 3azo_A 155 GP-----SDVRRFLAAVPLDGSAAADRSAVR-------ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTA 222 (662)
T ss_dssp ST-----TCEEEEEEEEETTSTTTTCGGGSE-------ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEE
T ss_pred CC-----CCceeEEEEEECCCCccccCCcee-------EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEE
Confidence 00 00115789999987 5542 233 4445778899999999998777543 489999
Q ss_pred ECC-CC---eEEEEec-CCCCEEEEEEeCC--EEEEEEcCC--eEEEEECCCCcEEEEecccCCcc--------eEEEEE
Q 001349 1010 STS-NY---NMVGSLP-TLSEVRAMVVSSE--LVYLGCKGG--TVEIWDQKRQIRIETLQTGTSGK--------VQCMAL 1072 (1094)
Q Consensus 1010 d~~-~~---~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg--~I~vwd~~t~~~~~~l~~~h~~~--------I~~l~~ 1072 (1094)
|+. ++ ....... +...+..+.|+|| ++++++.++ .|++||..+++..... .++... +..++|
T Consensus 223 d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~-~~~~~~~~p~w~~~~~~~~~ 301 (662)
T 3azo_A 223 RVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLC-RREEEFAGPLWTPGMRWFAP 301 (662)
T ss_dssp EECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESS-CCSSBSSCCCCSTTCCSEEE
T ss_pred EECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecc-cccccccCccccccCceEeE
Confidence 998 56 4433333 3678999999998 677777777 6777777677654433 333322 567899
Q ss_pred cCCCCEEEEEeCCCcEEEEe
Q 001349 1073 DDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1073 Spdg~~L~sgs~DG~I~iWd 1092 (1094)
+|+++++++++. |+++||.
T Consensus 302 ~~~~~~~~~~~~-~~~~l~~ 320 (662)
T 3azo_A 302 LANGLIAVVHGK-GAAVLGI 320 (662)
T ss_dssp CTTSCEEEEEBS-SSCEEEE
T ss_pred eCCCEEEEEEEc-CccEEEE
Confidence 999999999998 9999994
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.9e-12 Score=157.02 Aligned_cols=277 Identities=10% Similarity=0.002 Sum_probs=175.1
Q ss_pred hccccccccccCcEEEEeeCCC---CeEEEeCC----cceeec------ccCCCcEEEEEEeCC--EEE-----EEECCC
Q 001349 774 ELRKYSPLAFEMVKVLSNGHDS---SADFWNHR----ELVHVD------SSENGKVLSIACFRD--KIF-----SGHSDG 833 (1094)
Q Consensus 774 ~~~~~~~~~~d~~~l~s~s~dg---~I~vWd~~----~~~~~~------~~h~~~V~~l~fspd--~La-----Sgs~Dg 833 (1094)
.........++|.+++....++ .-.+|-.. .....+ .+|+..+.+++|||| +|+ +|+.+.
T Consensus 68 ~~~~~~~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~ 147 (695)
T 2bkl_A 68 YTDSVSTPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEA 147 (695)
T ss_dssp SCCEECCCEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCC
T ss_pred ccccCCCCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceE
Confidence 3344555568999888776654 35566543 111121 246667999999998 555 334457
Q ss_pred eEEEEecCCCcceeEEEecccCCCe--EEEEEecCCCEEEEEeCCCc-------------EEEEECCCCce--EEEEe-c
Q 001349 834 TIKVWTGRGSILHLIQQIREHTKAV--TGLAILQSGEMLYSGSLDKT-------------ARVWSIGNEEI--HCVQV-H 895 (1094)
Q Consensus 834 ~I~vWd~~t~~~~~~~~l~~H~~~V--~sv~fspdg~~LaSgs~Dgt-------------I~vWdi~~~~~--~~~~~-~ 895 (1094)
+|++||+.++. .+. ..+...+ ..++|+|||+.|+.++.|.+ |++|++.++.. ..+.. .
T Consensus 148 ~i~v~dl~tg~--~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~ 223 (695)
T 2bkl_A 148 VLHVIDVDSGE--WSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERT 223 (695)
T ss_dssp EEEEEETTTCC--BCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCC
T ss_pred EEEEEECCCCC--CcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecC
Confidence 89999999984 320 1122223 67999999999999998877 99999998762 22222 1
Q ss_pred ccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccce
Q 001349 896 DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHR 975 (1094)
Q Consensus 896 ~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~ 975 (1094)
.+...+..+. |+|||+.+++...++. ....|.+||..++...
T Consensus 224 ~~~~~~~~~~-------~SpDG~~l~~~~~~~~------------------------~~~~l~~~~~~~~~~~------- 265 (695)
T 2bkl_A 224 GDPTTFLQSD-------LSRDGKYLFVYILRGW------------------------SENDVYWKRPGEKDFR------- 265 (695)
T ss_dssp CCTTCEEEEE-------ECTTSCCEEEEEEETT------------------------TEEEEEEECTTCSSCE-------
T ss_pred CCCEEEEEEE-------ECCCCCEEEEEEeCCC------------------------CceEEEEEcCCCCceE-------
Confidence 2223455555 8999987644332210 0125666665555433
Q ss_pred eecCCCCCeEEEEEeCCccEEEEEECC--CCEEEEEECCCCeE---EEEecC--CCCEEEEEEeCC-EEEEEEcCCeEEE
Q 001349 976 KLLGKANPVHALQVHNGLVYTASTSLD--GAAVKMWSTSNYNM---VGSLPT--LSEVRAMVVSSE-LVYLGCKGGTVEI 1047 (1094)
Q Consensus 976 ~~~~h~~~V~sl~fs~~~~~las~s~D--g~~I~iwd~~~~~~---~~~~~~--~~~v~~l~~spd-~l~sgs~dg~I~v 1047 (1094)
.+..+...+....++++. +++....+ ...|.+||+.++.. ...+.+ ...+..++++.+ ++++...|+..++
T Consensus 266 ~l~~~~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l 344 (695)
T 2bkl_A 266 LLVKGVGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEV 344 (695)
T ss_dssp EEEECSSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEE
T ss_pred EeecCCCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEE
Confidence 233344455566665555 55554422 25899999987653 333333 445788888877 6777888998888
Q ss_pred EECC-CCcEEEEecccCCcceEEEEEcCCCCEEEEEe----CCCcEEEEeC
Q 001349 1048 WDQK-RQIRIETLQTGTSGKVQCMALDDNEEFLVIGT----SDGRIQAWGL 1093 (1094)
Q Consensus 1048 wd~~-t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs----~DG~I~iWdl 1093 (1094)
|.+. +++....+...+.+.|..++++||++.++... ..++|++||+
T Consensus 345 ~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~ 395 (695)
T 2bkl_A 345 RVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSV 395 (695)
T ss_dssp EEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEET
T ss_pred EEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence 8654 46666666433366788899999998776332 3478999986
|
| >3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.8e-14 Score=146.09 Aligned_cols=71 Identities=17% Similarity=0.376 Sum_probs=63.4
Q ss_pred CCCCceeccCccccccCcEEc-CCcccccHHhHHHHHHhC-CCCCCC--CCcCCCCCCCCChhHHHHHHHHHHHHh
Q 001349 159 TPPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERG-NSSCPI--TRQKLSSTKLPKTNYVLKRLIASWQEQ 230 (1094)
Q Consensus 159 ~~~~~~~CpIc~~~~~dPv~~-~cGhtfc~~ci~~~~~~~-~~~CP~--c~~~~~~~~~~~pN~~l~~~i~~~~~~ 230 (1094)
....+|.||||+++|+|||+. .|||+||+.||..||..+ ...||+ |++.+...++. ||..|+++|+.|+.+
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~-pN~~L~~lve~~k~r 251 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFV-RDPIMELRCKIAKMK 251 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEE-ECHHHHHHHHHHHHH
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCC-cCHHHHHHHHHHHHH
Confidence 345689999999999999985 999999999999999863 346999 99999999997 999999999999875
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.2e-11 Score=137.99 Aligned_cols=250 Identities=9% Similarity=-0.023 Sum_probs=159.4
Q ss_pred cCcEEEEee---------CCCCeEEEeCCcc-eeecccCCCcEEEEEEeCC--EEEEEECC---C--eEEEEecCCCcce
Q 001349 784 EMVKVLSNG---------HDSSADFWNHREL-VHVDSSENGKVLSIACFRD--KIFSGHSD---G--TIKVWTGRGSILH 846 (1094)
Q Consensus 784 d~~~l~s~s---------~dg~I~vWd~~~~-~~~~~~h~~~V~~l~fspd--~LaSgs~D---g--~I~vWd~~t~~~~ 846 (1094)
||.+++... .++.|.+|+.... ...+ ..+..+.|+|| .|+.++.+ + .|.+||+.++ .
T Consensus 23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g--~ 96 (347)
T 2gop_A 23 KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETL--S 96 (347)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTT--E
T ss_pred CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCC--c
Confidence 888877642 3567888888732 2222 56889999997 67766543 3 4888898887 3
Q ss_pred eEEEecccCCCeEEEEEecCCCEEEEEeCC---------------------------CcEEEEECCCCce-EEEEecccC
Q 001349 847 LIQQIREHTKAVTGLAILQSGEMLYSGSLD---------------------------KTARVWSIGNEEI-HCVQVHDIK 898 (1094)
Q Consensus 847 ~~~~l~~H~~~V~sv~fspdg~~LaSgs~D---------------------------gtI~vWdi~~~~~-~~~~~~~~~ 898 (1094)
...... +.. +..+.|+|||+.|+.++.+ ..|.+||+.+++. ..+.. .
T Consensus 97 ~~~l~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~---~ 171 (347)
T 2gop_A 97 SKKILE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK---P 171 (347)
T ss_dssp EEEEEE-ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE---E
T ss_pred eEEEEc-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC---C
Confidence 333332 334 9999999999999888743 5688999988864 33332 2
Q ss_pred ccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEc-CCeEEEEECCCCceeEEeccceee
Q 001349 899 DQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQ-DGAIQEIDLATGTFATIQTGHRKL 977 (1094)
Q Consensus 899 ~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~-Dg~I~iwDl~~~~~~~~~~~~~~~ 977 (1094)
.+..+. |+||| .+++...++.. . ... ...|.++| +++... +
T Consensus 172 -~~~~~~-------~spdg-~~~~~~~~~~~-------~-------------~~~~~~~l~~~d--~~~~~~-------l 213 (347)
T 2gop_A 172 -RFSSGI-------WHRDK-IVVNVPHREII-------P-------------QYFKFWDIYIWE--DGKEEK-------M 213 (347)
T ss_dssp -TTCEEE-------EETTE-EEEEEECCCSS-------C-------------CSSCCEEEEEEE--TTEEEE-------E
T ss_pred -Cccccc-------CCCCe-EEEEEeccccc-------c-------------cccccccEEEeC--CCceEE-------e
Confidence 455554 88888 43333221100 0 000 12344555 444322 1
Q ss_pred cCCCCCeEEEEEeCCccEEEEEECCC-------CEEEEEECCCCeEEEEec-CCCCEEE-EEEeCC-EEEEEEcCCeEEE
Q 001349 978 LGKANPVHALQVHNGLVYTASTSLDG-------AAVKMWSTSNYNMVGSLP-TLSEVRA-MVVSSE-LVYLGCKGGTVEI 1047 (1094)
Q Consensus 978 ~~h~~~V~sl~fs~~~~~las~s~Dg-------~~I~iwd~~~~~~~~~~~-~~~~v~~-l~~spd-~l~sgs~dg~I~v 1047 (1094)
..+ ..+..+ +|++.+++..+.++ ..|.+|| +++...... +...+.. +.|+ | ++++++.++.+++
T Consensus 214 ~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg~~~~~~~~~~~~l 287 (347)
T 2gop_A 214 FEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GKVYFTLFEEGSVNL 287 (347)
T ss_dssp EEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TEEEEEEEETTEEEE
T ss_pred ccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-CcEEEEEecCCcEEE
Confidence 122 344444 88888777766442 3788888 555444333 3466775 8898 7 6778889999999
Q ss_pred EECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcE-EEEeC
Q 001349 1048 WDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRI-QAWGL 1093 (1094)
Q Consensus 1048 wd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I-~iWdl 1093 (1094)
| +.+++....+ .+.+.|.+++|+| .++++++.+++. .+|.+
T Consensus 288 ~-~~~g~~~~~~--~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 288 Y-IWDGEIKPIA--KGRHWIMGFDVDE--IVVYLKETATRLRELFTW 329 (347)
T ss_dssp E-EESSSEEEEE--CSSSEEEEEEESS--SEEEEEECSSSCCEEEEE
T ss_pred E-EcCCceEEEe--cCCCeEEeeeeeC--cEEEEEcCCCChHHheEe
Confidence 9 8777654444 3567899999999 677888777765 77754
|
| >1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.6e-14 Score=140.10 Aligned_cols=68 Identities=22% Similarity=0.357 Sum_probs=61.9
Q ss_pred CCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCC-CCCChhHHHHHHHHHHHH
Q 001349 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSST-KLPKTNYVLKRLIASWQE 229 (1094)
Q Consensus 161 ~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~-~~~~pN~~l~~~i~~~~~ 229 (1094)
++++.||||+++|.+||+++|||+||+.||..|+..+...||.||..+... .+. +|..|+++++.|..
T Consensus 76 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~-~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMI-PNEILQTLLDLFFP 144 (150)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCC-BCHHHHHHHHHHST
T ss_pred ccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCC-CCHHHHHHHHHHhh
Confidence 348999999999999999999999999999999997666899999999987 675 99999999999874
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.5e-12 Score=144.70 Aligned_cols=268 Identities=10% Similarity=-0.023 Sum_probs=164.8
Q ss_pred ceeecccCCCcEEE-----EEEeCC--EEEEEEC-CC--eEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEe
Q 001349 805 LVHVDSSENGKVLS-----IACFRD--KIFSGHS-DG--TIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGS 874 (1094)
Q Consensus 805 ~~~~~~~h~~~V~~-----l~fspd--~LaSgs~-Dg--~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs 874 (1094)
....+..|.+.... .+|+|| +|+.++. +| .|.+||+.++ .......+|...+..+.|+|||+.|+.++
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g--~~~~lt~~~~~~~~~~~~spdg~~l~~~~ 99 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ--VATQLTEGRGDNTFGGFLSPDDDALFYVK 99 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTC--EEEECCCSSCBCSSSCEECTTSSEEEEEE
T ss_pred ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCC--ceEEeeeCCCCCccceEEcCCCCEEEEEe
Confidence 34455666666666 889997 7777776 67 4888899988 55555566666666788999999999999
Q ss_pred CCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcC
Q 001349 875 LDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQD 954 (1094)
Q Consensus 875 ~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~D 954 (1094)
.++.|++||+.+++...+.... ...+.... ..++|+|+.++....++.- |..... ...+ ...+....+
T Consensus 100 ~~~~l~~~d~~~g~~~~~~~~~-~~~~~~~~-----~~~~~dg~~l~~~~~~~~~--~~~~~~--~~~~--~~~~~~~~~ 167 (388)
T 3pe7_A 100 DGRNLMRVDLATLEENVVYQVP-AEWVGYGT-----WVANSDCTKLVGIEIRRED--WVPLTD--WKKF--HEFYFTKPC 167 (388)
T ss_dssp TTTEEEEEETTTCCEEEEEECC-TTEEEEEE-----EEECTTSSEEEEEEEEGGG--CCCCCS--HHHH--HHHGGGCCC
T ss_pred CCCeEEEEECCCCcceeeeech-hhcccccc-----eeECCCCCeeccccccCcc--cccccc--cchh--hhhhccCCc
Confidence 9999999999998744433321 12222221 1257888776542211100 000000 0000 000112345
Q ss_pred CeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeC-CccEEEEEECCC-----CEEEEEECCCCeEEEEecCC--CCE
Q 001349 955 GAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDG-----AAVKMWSTSNYNMVGSLPTL--SEV 1026 (1094)
Q Consensus 955 g~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~-~~~~las~s~Dg-----~~I~iwd~~~~~~~~~~~~~--~~v 1026 (1094)
+.|.+||+.+++... +..+...+..+.|+| ++..++..+.++ ..|.+||...+.......+. ..+
T Consensus 168 ~~l~~~d~~~g~~~~-------l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 240 (388)
T 3pe7_A 168 CRLMRVDLKTGESTV-------ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESC 240 (388)
T ss_dssp EEEEEEETTTCCEEE-------EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEE
T ss_pred ceEEEEECCCCceEE-------eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCccc
Confidence 789999999987643 233456789999999 998887776531 26888887765543333333 357
Q ss_pred EEEEEeCC--EEEE-EEcCC----eEEEEECCCCcEE--EEecccCCcc---eEEEEEcCCCCEEEEE---------eCC
Q 001349 1027 RAMVVSSE--LVYL-GCKGG----TVEIWDQKRQIRI--ETLQTGTSGK---VQCMALDDNEEFLVIG---------TSD 1085 (1094)
Q Consensus 1027 ~~l~~spd--~l~s-gs~dg----~I~vwd~~t~~~~--~~l~~~h~~~---I~~l~~Spdg~~L~sg---------s~D 1085 (1094)
..+.|+|| .|+. +..++ .|++||+.+++.. ..+. ++... ...++|+|||+.|+.. ..+
T Consensus 241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 319 (388)
T 3pe7_A 241 THEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMP-ACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIEND 319 (388)
T ss_dssp EEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEEC-CEEEEEECTTSSEEEEEECCC------------CCC
T ss_pred ccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCC-CceeeeecCCCCeEccCCCcceeEeeeccccccCCC
Confidence 78899998 3443 33322 3999999998743 3331 21110 1223799999988754 456
Q ss_pred CcEEEEeCC
Q 001349 1086 GRIQAWGLS 1094 (1094)
Q Consensus 1086 G~I~iWdls 1094 (1094)
+.|++||+.
T Consensus 320 ~~i~~~d~~ 328 (388)
T 3pe7_A 320 PFLYVFNMK 328 (388)
T ss_dssp CEEEEEETT
T ss_pred CEEEEEecc
Confidence 689999863
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-11 Score=134.99 Aligned_cols=219 Identities=10% Similarity=0.075 Sum_probs=154.3
Q ss_pred eCC-EEEEEECCCeEEEEecCCCcceeEEEecccC-CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCc
Q 001349 822 FRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHT-KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKD 899 (1094)
Q Consensus 822 spd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~-~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~ 899 (1094)
+|+ +|++++.|+.|.+||..++ +.+.++..+. ..+.++.++|+|++++ +.++.|..||. +|+...........
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG--~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~ 77 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTK--EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGC 77 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTT--EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTC
T ss_pred CCCcEEEeeCCCCEEEEEECCCC--eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCc
Confidence 455 8999999999999999999 7888888776 4789999999999988 45778999999 56422221111112
Q ss_pred cceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEc-CCeEEEEECCCCceeEEeccceeec
Q 001349 900 QIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQ-DGAIQEIDLATGTFATIQTGHRKLL 978 (1094)
Q Consensus 900 ~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~-Dg~I~iwDl~~~~~~~~~~~~~~~~ 978 (1094)
.+.++. +.++|+.+ ++.+. ++.|..+|. +|+.+..+.......
T Consensus 78 ~~~~~~-------~~~dG~~l----------------------------v~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~ 121 (276)
T 3no2_A 78 EMQTAR-------ILPDGNAL----------------------------VAWCGHPSTILEVNM-KGEVLSKTEFETGIE 121 (276)
T ss_dssp EEEEEE-------ECTTSCEE----------------------------EEEESTTEEEEEECT-TSCEEEEEEECCSCS
T ss_pred cccccE-------ECCCCCEE----------------------------EEecCCCCEEEEEeC-CCCEEEEEeccCCCC
Confidence 344433 67777753 34444 556666664 455543332111111
Q ss_pred CCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEE
Q 001349 979 GKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRI 1056 (1094)
Q Consensus 979 ~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~ 1056 (1094)
++......+.+.+++.++++...++ .|..||.. |+.+.++.....+.++.+.++ .+++++.++.|..||..+|+.+
T Consensus 122 ~~~~~~~~v~~~~~G~~lv~~~~~~-~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~ 199 (276)
T 3no2_A 122 RPHAQFRQINKNKKGNYLVPLFATS-EVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIV 199 (276)
T ss_dssp SGGGSCSCCEECTTSCEEEEETTTT-EEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEE
T ss_pred cccccccCceECCCCCEEEEecCCC-EEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEE
Confidence 2223445567789999998887775 99999998 999999986666667777766 6777777889999999999999
Q ss_pred EEeccc-----CCcceEEEEEcCCCCEEEEEe
Q 001349 1057 ETLQTG-----TSGKVQCMALDDNEEFLVIGT 1083 (1094)
Q Consensus 1057 ~~l~~~-----h~~~I~~l~~Spdg~~L~sgs 1083 (1094)
..+... ....+..++..++|.++++..
T Consensus 200 w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 200 RRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred EEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 988421 112478899999999888773
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.9e-11 Score=134.14 Aligned_cols=250 Identities=10% Similarity=0.046 Sum_probs=161.6
Q ss_pred eecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 001349 807 HVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWS 883 (1094)
Q Consensus 807 ~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWd 883 (1094)
..+..+.....+++|+|+ +++++..++.|..||..++ ...+..+...+.+++|+++|+++++...++.|.+||
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d 96 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ----LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQR 96 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC----EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC----eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEc
Confidence 334455667889999985 6888889999999999876 344556778899999999999888887788999999
Q ss_pred CCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECC
Q 001349 884 IGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA 963 (1094)
Q Consensus 884 i~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~ 963 (1094)
..+++...+........ ...+..++++|+|+.+++....|....+.... .......+.|..||..
T Consensus 97 ~~~g~~~~~~~~~~~~~----~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~-----------~~~~~~~~~l~~~~~~ 161 (296)
T 3e5z_A 97 EPGGEWESIADSFEGKK----LNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYG-----------GEMELPGRWVFRLAPD 161 (296)
T ss_dssp STTCCEEEEECEETTEE----CCCCCCEEECTTSCEEEEECSHHHHCGGGSSC-----------CCCCSSSCEEEEECTT
T ss_pred CCCCcEEEEeeccCCCC----CCCCCCEEECCCCCEEEECCcccccccccccc-----------ccccCCCcEEEEECCC
Confidence 98876443322111100 01122344778777433211000000000000 0000013456666655
Q ss_pred CCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECC-CCeE---EEEec-CCCCEEEEEEeCC-EEE
Q 001349 964 TGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS-NYNM---VGSLP-TLSEVRAMVVSSE-LVY 1037 (1094)
Q Consensus 964 ~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~-~~~~---~~~~~-~~~~v~~l~~spd-~l~ 1037 (1094)
+... .+..+......++|+|++..+++.+.+ +.|.+||+. ++.. ...+. +...+.+++++++ .++
T Consensus 162 -g~~~-------~~~~~~~~~~gi~~s~dg~~lv~~~~~-~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~ 232 (296)
T 3e5z_A 162 -GTLS-------APIRDRVKPNGLAFLPSGNLLVSDTGD-NATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIW 232 (296)
T ss_dssp -SCEE-------EEECCCSSEEEEEECTTSCEEEEETTT-TEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEE
T ss_pred -CCEE-------EeecCCCCCccEEECCCCCEEEEeCCC-CeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEE
Confidence 4432 223344567899999999888555545 499999987 5554 23332 3445678999988 566
Q ss_pred EEEcCCeEEEEECCCCcEEEEecccCCcceEEEEE-cCCCCEEEEEeCCCcE
Q 001349 1038 LGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMAL-DDNEEFLVIGTSDGRI 1088 (1094)
Q Consensus 1038 sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~-Spdg~~L~sgs~DG~I 1088 (1094)
++. ++.|.+||.. ++.+..+. .+.. +++++| +|+++.|++++.+|..
T Consensus 233 v~~-~~~v~~~~~~-g~~~~~~~-~~~~-~~~~~f~~~d~~~L~v~t~~~l~ 280 (296)
T 3e5z_A 233 ASA-GDGVHVLTPD-GDELGRVL-TPQT-TSNLCFGGPEGRTLYMTVSTEFW 280 (296)
T ss_dssp EEE-TTEEEEECTT-SCEEEEEE-CSSC-CCEEEEESTTSCEEEEEETTEEE
T ss_pred EEc-CCeEEEECCC-CCEEEEEE-CCCC-ceeEEEECCCCCEEEEEcCCeEE
Confidence 666 8899999986 77777774 4555 999999 5899999998887543
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.3e-11 Score=135.35 Aligned_cols=257 Identities=10% Similarity=-0.011 Sum_probs=172.8
Q ss_pred CCCCeEEEeCCcce--eec-c-----cCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEE
Q 001349 793 HDSSADFWNHRELV--HVD-S-----SENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAI 863 (1094)
Q Consensus 793 ~dg~I~vWd~~~~~--~~~-~-----~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~f 863 (1094)
.+++|.+||..+.. ... . ........+.+.++ .+++...+++|.+||..++ +.+.++. .......+++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~--~~~~~i~-~~~~p~~i~~ 91 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTF--KEVGRIT-GFTSPRYIHF 91 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTC--CEEEEEE-CCSSEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECccc--EEEEEcC-CCCCCcEEEE
Confidence 47899999987322 111 1 12245688888887 4455556799999999998 6777774 4567899999
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEE
Q 001349 864 LQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLAL 943 (1094)
Q Consensus 864 spdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~ 943 (1094)
+++++..++...++.|.+||..+++....... .... .....+..+++
T Consensus 92 ~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~--g~~~-------------------------------~~~~~p~~i~~ 138 (328)
T 3dsm_A 92 LSDEKAYVTQIWDYRIFIINPKTYEITGYIEC--PDMD-------------------------------MESGSTEQMVQ 138 (328)
T ss_dssp EETTEEEEEEBSCSEEEEEETTTTEEEEEEEC--TTCC-------------------------------TTTCBCCCEEE
T ss_pred eCCCeEEEEECCCCeEEEEECCCCeEEEEEEc--CCcc-------------------------------ccCCCcceEEE
Confidence 99985555544899999999998753221111 1100 00001122233
Q ss_pred eCCEEEEEE--cCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECC---------CCEEEEEECC
Q 001349 944 VQGKVYCGC--QDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLD---------GAAVKMWSTS 1012 (1094)
Q Consensus 944 s~~~l~sgs--~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~D---------g~~I~iwd~~ 1012 (1094)
.++.++++. .++.|.+||+.+++....... ......+.+++++.+.+++..+ .+.|.+||..
T Consensus 139 ~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-------g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~ 211 (328)
T 3dsm_A 139 YGKYVYVNCWSYQNRILKIDTETDKVVDELTI-------GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE 211 (328)
T ss_dssp ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC-------SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT
T ss_pred ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-------CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECC
Confidence 344566665 488999999999887643321 1235678899988877776543 1489999999
Q ss_pred CCeEEEEecC--CCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEE-ecccCCcceEEEEEcC-CCCEEEEE----
Q 001349 1013 NYNMVGSLPT--LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIET-LQTGTSGKVQCMALDD-NEEFLVIG---- 1082 (1094)
Q Consensus 1013 ~~~~~~~~~~--~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~-l~~~h~~~I~~l~~Sp-dg~~L~sg---- 1082 (1094)
+++....+.. ...+..++++|+ .++++.. .|.+||..+++.... +...+......++++| ++.+.++.
T Consensus 212 t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y 289 (328)
T 3dsm_A 212 TFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDY 289 (328)
T ss_dssp TTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTS
T ss_pred CCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEccccc
Confidence 9998877763 457899999986 6666554 899999998875321 1111245789999999 55555665
Q ss_pred eCCCcEEEEeCC
Q 001349 1083 TSDGRIQAWGLS 1094 (1094)
Q Consensus 1083 s~DG~I~iWdls 1094 (1094)
..+|+|.+||..
T Consensus 290 ~~~~~V~v~d~~ 301 (328)
T 3dsm_A 290 QQQGIVYRYSPQ 301 (328)
T ss_dssp SSEEEEEEECTT
T ss_pred ccCCEEEEECCC
Confidence 578999999863
|
| >2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.1e-14 Score=129.28 Aligned_cols=69 Identities=17% Similarity=0.358 Sum_probs=62.7
Q ss_pred CCceeccCccccccCcEEc-CCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHhC
Q 001349 161 PKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQN 231 (1094)
Q Consensus 161 ~~~~~CpIc~~~~~dPv~~-~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~~ 231 (1094)
++++.||||++.|.+||++ +|||+||+.||..|+.. ...||.||+.+....+. +|..|+++++.++...
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~-~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLK-NNRILDELVKSLNFAR 89 (99)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCE-ECHHHHHHHHHHHHHH
T ss_pred CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCC-cCHHHHHHHHHHHHHH
Confidence 3479999999999999998 99999999999999986 45899999999988886 9999999999998754
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-10 Score=128.21 Aligned_cols=231 Identities=7% Similarity=0.099 Sum_probs=153.2
Q ss_pred ccccccCcEEEEeeCCCCeEEEeCCc-ceeecc------cCCCcEEEEEEe-CC-EEEEEEC--CCeEEEEecCCCccee
Q 001349 779 SPLAFEMVKVLSNGHDSSADFWNHRE-LVHVDS------SENGKVLSIACF-RD-KIFSGHS--DGTIKVWTGRGSILHL 847 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~dg~I~vWd~~~-~~~~~~------~h~~~V~~l~fs-pd-~LaSgs~--Dg~I~vWd~~t~~~~~ 847 (1094)
..+.+++..+++...++.|.+||... ....+. +|...+.++++. ++ .++.++. ++.|.+||. ++ ..
T Consensus 35 v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-~g--~~ 111 (286)
T 1q7f_A 35 VAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YG--QF 111 (286)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TS--CE
T ss_pred EEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-CC--cE
Confidence 34556778888888899999999773 222221 344678999995 54 5555543 899999994 45 35
Q ss_pred EEEec-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeC
Q 001349 848 IQQIR-EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRN 926 (1094)
Q Consensus 848 ~~~l~-~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~ 926 (1094)
+..+. .+...+.+++++++|+++++.+.++.|.+||........+........+..++ ++++|+.
T Consensus 112 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~-------~~~~g~l------- 177 (286)
T 1q7f_A 112 VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVV-------VNDKQEI------- 177 (286)
T ss_dssp EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEE-------ECSSSEE-------
T ss_pred EEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEE-------ECCCCCE-------
Confidence 55553 34567899999999998888888899999997653222221111112223333 5555432
Q ss_pred CeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEE
Q 001349 927 GKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAV 1006 (1094)
Q Consensus 927 g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I 1006 (1094)
+++.+.++.|++||.. +..+..+.. .++...+..+++++++.++++...+++.|
T Consensus 178 ---------------------~v~~~~~~~i~~~~~~-g~~~~~~~~----~g~~~~p~~i~~d~~G~l~v~~~~~~~~i 231 (286)
T 1q7f_A 178 ---------------------FISDNRAHCVKVFNYE-GQYLRQIGG----EGITNYPIGVGINSNGEILIADNHNNFNL 231 (286)
T ss_dssp ---------------------EEEEGGGTEEEEEETT-CCEEEEESC----TTTSCSEEEEEECTTCCEEEEECSSSCEE
T ss_pred ---------------------EEEECCCCEEEEEcCC-CCEEEEEcc----CCccCCCcEEEECCCCCEEEEeCCCCEEE
Confidence 3344567899999974 444432211 12335788999999998888776553389
Q ss_pred EEEECCCCeEEEEec-C--CCCEEEEEEeCC-EEEEEEcCCeEEEEECCCC
Q 001349 1007 KMWSTSNYNMVGSLP-T--LSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQ 1053 (1094)
Q Consensus 1007 ~iwd~~~~~~~~~~~-~--~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~ 1053 (1094)
.+||. +++.+..+. + ...+.+++++|+ .+++++.+++|++|+....
T Consensus 232 ~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 232 TIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQL 281 (286)
T ss_dssp EEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSCC
T ss_pred EEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEcccc
Confidence 99995 566666665 2 234789999998 5555578999999997654
|
| >3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=7e-14 Score=128.40 Aligned_cols=71 Identities=15% Similarity=0.236 Sum_probs=64.0
Q ss_pred CCceeccCccccccCcEE-cCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHhCC
Q 001349 161 PKDFVCPITTHIFDDPVT-LETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNP 232 (1094)
Q Consensus 161 ~~~~~CpIc~~~~~dPv~-~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~~~ 232 (1094)
.+++.||||+++|.+||+ ++|||+||+.||..|+......||.||..+....+. +|+.+.++++.......
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~-~~~~~~~i~~~~~~l~~ 91 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELV-NCRWAEEVTQQLDTLQL 91 (100)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCE-ECTTHHHHHHHHHHHCC
T ss_pred CCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhH-hhHHHHHHHHHHHHHHH
Confidence 348999999999999999 999999999999999998656899999999988887 99999999998877643
|
| >2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=8.7e-14 Score=123.97 Aligned_cols=65 Identities=20% Similarity=0.465 Sum_probs=56.3
Q ss_pred CCCCceeccCccccccCcEEcCCcccccHHhHHHHHHhC-----CCCCCCCCcCCCCCCCCChhHHHHHHH
Q 001349 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERG-----NSSCPITRQKLSSTKLPKTNYVLKRLI 224 (1094)
Q Consensus 159 ~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~-----~~~CP~c~~~~~~~~~~~pN~~l~~~i 224 (1094)
.+.+++.||||++.|.+|++++|||+||+.||..|+... ...||.||+.+....+. +|+.|+++|
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~-~n~~l~~~v 84 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLK-PNLHVANIV 84 (85)
T ss_dssp CCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCE-ECSCCCSSC
T ss_pred hCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCC-cCHHHHHhh
Confidence 455689999999999999999999999999999999873 55799999999988886 887765543
|
| >1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=6.6e-14 Score=132.69 Aligned_cols=66 Identities=21% Similarity=0.355 Sum_probs=60.4
Q ss_pred CCceeccCccccccCcEEc-CCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHh
Q 001349 161 PKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQ 230 (1094)
Q Consensus 161 ~~~~~CpIc~~~~~dPv~~-~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~ 230 (1094)
.+++.||||+++|.+||++ +|||+||+.||..|+. ..||.||..+....+. +|+.|+++++.+...
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~-~n~~l~~l~~~~~~~ 86 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLK-INRQLDSMIQLCSKL 86 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCC-CCHHHHHHHHHHHHH
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCcccccc-ccHHHHHHHHHHHHH
Confidence 3489999999999999999 9999999999999987 5799999999888887 999999999998764
|
| >2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.9e-14 Score=126.33 Aligned_cols=64 Identities=25% Similarity=0.485 Sum_probs=55.3
Q ss_pred CCCCceeccCccccccCcEEcCCcccccHHhHHHHHHhC------CCCCCCCCcCCCCCCCCChhHHHHHH
Q 001349 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERG------NSSCPITRQKLSSTKLPKTNYVLKRL 223 (1094)
Q Consensus 159 ~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~------~~~CP~c~~~~~~~~~~~pN~~l~~~ 223 (1094)
.+++++.||||++.|.+|++++|||+||+.||.+|+... ...||.||+.+....+. +|+.|+++
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~-~n~~l~~l 77 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQ-ANQHLANI 77 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGG-TCSSSCCC
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCC-cCHHHHHh
Confidence 345689999999999999999999999999999999863 45799999999988886 88876554
|
| >2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=5.9e-13 Score=114.93 Aligned_cols=61 Identities=21% Similarity=0.414 Sum_probs=49.4
Q ss_pred CCCCCCceeccCccccccCcEEcC-CcccccHHhHHHHHHhC-CCCCCCCCcCCCCCCCCChh
Q 001349 157 KHTPPKDFVCPITTHIFDDPVTLE-TGQTYERRAIQEWIERG-NSSCPITRQKLSSTKLPKTN 217 (1094)
Q Consensus 157 ~~~~~~~~~CpIc~~~~~dPv~~~-cGhtfc~~ci~~~~~~~-~~~CP~c~~~~~~~~~~~pN 217 (1094)
...+++++.||||+++|.+||+++ |||+||+.||.+|+... ...||.||+.+...+.+.+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 345566999999999999999999 99999999999999864 35799999985543332255
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-09 Score=132.80 Aligned_cols=296 Identities=11% Similarity=0.108 Sum_probs=195.2
Q ss_pred CcEEEEeeCCCCeEEEeCCc--ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecC--CCcceeEEEecccCCCe
Q 001349 785 MVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR--GSILHLIQQIREHTKAV 858 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~--t~~~~~~~~l~~H~~~V 858 (1094)
...+++...++.|.+||..+ .+..+. ....+..+.|+|| ++++++.||.|.+||+. ++ +.+.++.... ..
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~--~~v~~i~~G~-~P 242 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVLD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP--TTVAEIKIGS-EA 242 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC--CEEEEEECCS-EE
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEEe-CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCC--cEeEEEecCC-CC
Confidence 45778888899999999874 333332 2345779999997 88889999999999996 66 5667776433 46
Q ss_pred EEEEEe----cCCCEEEEEeC-CCcEEEEECCCCceE-EEEeccc--------Cc-cceeeeecCceEEEeeCCCeEEEE
Q 001349 859 TGLAIL----QSGEMLYSGSL-DKTARVWSIGNEEIH-CVQVHDI--------KD-QIQNLAVSNSILCFIPQGAGIKVH 923 (1094)
Q Consensus 859 ~sv~fs----pdg~~LaSgs~-DgtI~vWdi~~~~~~-~~~~~~~--------~~-~V~~v~~~~~~~~fspdg~~l~~~ 923 (1094)
..++|+ |||+++++++. +++|.|||..+.+.. .+..... .. .+..+. +++++..+.+.
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~-------~s~~~~~~vv~ 315 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAIL-------ASHYRPEFIVN 315 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEE-------ECSSSSEEEEE
T ss_pred ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEE-------EcCCCCEEEEE
Confidence 789999 69998888775 599999999887532 2222110 01 233333 66666554444
Q ss_pred Ee-CCeEEEEcCC-------------CCceEEEEeC--CEEEEEE-cCCeEEEEECCCCceeEEeccceeecCCCCCeEE
Q 001349 924 LR-NGKTKLLNSS-------------KYPKCLALVQ--GKVYCGC-QDGAIQEIDLATGTFATIQTGHRKLLGKANPVHA 986 (1094)
Q Consensus 924 ~~-~g~i~l~~~~-------------~~v~~l~~s~--~~l~sgs-~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~s 986 (1094)
.. .|.+.+++.. .....+.|++ .+++++. .++.|.++|+.+++........ ....|.+.-..
T Consensus 316 ~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vg-g~~Phpg~g~~ 394 (567)
T 1qks_A 316 VKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTG-GQTPHPGRGAN 394 (567)
T ss_dssp ETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS-SSSBCCTTCEE
T ss_pred ecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEecc-CcCCCCcccee
Confidence 33 3666666643 3455667775 3455544 6789999999999876543210 11234322222
Q ss_pred EEEeCC-ccEEEEEECCCCEEEEEECCC-------CeEEEEecCC-CCEEEEEEeCC--EEEEEEc-------CCeEEEE
Q 001349 987 LQVHNG-LVYTASTSLDGAAVKMWSTSN-------YNMVGSLPTL-SEVRAMVVSSE--LVYLGCK-------GGTVEIW 1048 (1094)
Q Consensus 987 l~fs~~-~~~las~s~Dg~~I~iwd~~~-------~~~~~~~~~~-~~v~~l~~spd--~l~sgs~-------dg~I~vw 1048 (1094)
+ ++|+ +.+.++....+++|.++|..+ .+.++++... ..-..+.++|+ ++++... .++|.||
T Consensus 395 ~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~ 473 (567)
T 1qks_A 395 F-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVF 473 (567)
T ss_dssp E-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEE
T ss_pred e-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEE
Confidence 2 5776 555555543334999999987 6788888743 33345778888 7777653 4699999
Q ss_pred ECCCC-----c-EEEEecc-------cCCcceEEEEEcCCCCEEEEEeC-----CCcEEEEeC
Q 001349 1049 DQKRQ-----I-RIETLQT-------GTSGKVQCMALDDNEEFLVIGTS-----DGRIQAWGL 1093 (1094)
Q Consensus 1049 d~~t~-----~-~~~~l~~-------~h~~~I~~l~~Spdg~~L~sgs~-----DG~I~iWdl 1093 (1094)
|+.+. . .+..+.. .....+..+.|+|+|+.+..+.. ++.|.|+|.
T Consensus 474 d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~ 536 (567)
T 1qks_A 474 DIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDD 536 (567)
T ss_dssp EGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEET
T ss_pred ECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEEC
Confidence 99876 2 2233321 12347899999999998877643 789999885
|
| >3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=1e-13 Score=131.15 Aligned_cols=67 Identities=27% Similarity=0.412 Sum_probs=59.5
Q ss_pred CCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCC-------CCCCChhHHHHHHHHHHH
Q 001349 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSS-------TKLPKTNYVLKRLIASWQ 228 (1094)
Q Consensus 161 ~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~-------~~~~~pN~~l~~~i~~~~ 228 (1094)
.+++.||||+++|.+||+++|||+||+.||..|+..+...||.||+.+.. ..+. +|..|.++|++|.
T Consensus 13 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~-~n~~l~~~i~~~~ 86 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSL-VNVELWTIIQKHY 86 (115)
T ss_dssp HHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCC-BCHHHHHHHHHHS
T ss_pred CCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccch-hhHHHHHHHHHHC
Confidence 44899999999999999999999999999999998766789999999863 5565 7999999999875
|
| >2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-13 Score=122.46 Aligned_cols=65 Identities=20% Similarity=0.527 Sum_probs=56.2
Q ss_pred CCCCCceeccCccccccCcEEcCCcccccHHhHHHHHHh-----CCCCCCCCCcCCCCCCCCChhHHHHHH
Q 001349 158 HTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIER-----GNSSCPITRQKLSSTKLPKTNYVLKRL 223 (1094)
Q Consensus 158 ~~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~-----~~~~CP~c~~~~~~~~~~~pN~~l~~~ 223 (1094)
..+.+++.||||++.|.+|++++|||+||+.||..|+.. +...||.||+.+....+. +|+.|+++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~-~n~~l~~~ 83 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR-PNRHVANI 83 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCC-CSCCCCCC
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcC-ccHHHHHh
Confidence 345668999999999999999999999999999999986 355799999999988886 88776554
|
| >2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.7e-13 Score=126.62 Aligned_cols=68 Identities=18% Similarity=0.386 Sum_probs=60.0
Q ss_pred CCCceeccCccccccCcEEc-CCcccccHHhHHHHHHhCCCCCCCCCcCCCCC----CCCChhHHHHHHHHHHHH
Q 001349 160 PPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSST----KLPKTNYVLKRLIASWQE 229 (1094)
Q Consensus 160 ~~~~~~CpIc~~~~~dPv~~-~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~----~~~~pN~~l~~~i~~~~~ 229 (1094)
+++++.||||+++|.+||++ +|||+||+.||..|+.. ...||.||..+... .+. +|..|.++++.+..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~-~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIR-SDKTLQDIVYKLVP 84 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEE-ECHHHHHHHHHHST
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccC-cCHHHHHHHHHHhh
Confidence 34589999999999999997 99999999999999987 46799999998875 565 89999999998763
|
| >2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=8.5e-13 Score=111.24 Aligned_cols=55 Identities=13% Similarity=0.353 Sum_probs=49.0
Q ss_pred CCCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCC
Q 001349 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKL 213 (1094)
Q Consensus 159 ~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~ 213 (1094)
.+++++.||||++.+.+|++++|||+||+.||.+|+..+...||.||+.+...++
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 4566899999999999999999999999999999997656689999999887654
|
| >3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A | Back alignment and structure |
|---|
Probab=99.35 E-value=3.3e-13 Score=128.06 Aligned_cols=78 Identities=22% Similarity=0.340 Sum_probs=66.2
Q ss_pred CCCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHhCCCCCCC
Q 001349 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGGLDL 237 (1094)
Q Consensus 159 ~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~~~~~~~~ 237 (1094)
.+++++.||||+++|.+||+++|||+||+.||..|+..+...||.||..+....+. +|..+.+.|..+.-.-+...|.
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~-~~~~l~~~i~~l~v~C~n~gC~ 91 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLF-PDNFAKREILSLMVKCPNEGCL 91 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCE-ECHHHHHHHHTSEEECSSTTCC
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcc-cCHHHHHHHccceeECCCCCCC
Confidence 55669999999999999999999999999999999987655899999999988887 9999999998766443333343
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.4e-09 Score=116.61 Aligned_cols=261 Identities=11% Similarity=0.084 Sum_probs=169.3
Q ss_pred ccccCcEEEEeeCCCCeEEEeCCcceeec--ccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCC
Q 001349 781 LAFEMVKVLSNGHDSSADFWNHRELVHVD--SSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTK 856 (1094)
Q Consensus 781 ~~~d~~~l~s~s~dg~I~vWd~~~~~~~~--~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~ 856 (1094)
+.+++...++...++.|.+||........ ..+...+.++++.++ ++++...++.|..||.... .....+..+..
T Consensus 22 ~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~--~~~~~~~~~~~ 99 (299)
T 2z2n_A 22 VSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGI--IKEYTLPNPDS 99 (299)
T ss_dssp ECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC--EEEEECSSTTC
T ss_pred ECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCc--EEEEeCCCcCC
Confidence 44567766666667889999987322222 234578999999886 5555555889999998633 22222333556
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCC
Q 001349 857 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSK 936 (1094)
Q Consensus 857 ~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~ 936 (1094)
.+.++++.++|.++++...++.|.+||. +++............+..+. +.++|.
T Consensus 100 ~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~-------~~~~g~------------------ 153 (299)
T 2z2n_A 100 APYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFIT-------LGSDNA------------------ 153 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEE-------ECTTSC------------------
T ss_pred CceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEE-------EcCCCC------------------
Confidence 7899999999998888878889999998 55433222211112222322 444443
Q ss_pred CceEEEEeCCEEEEEE-cCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCe
Q 001349 937 YPKCLALVQGKVYCGC-QDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN 1015 (1094)
Q Consensus 937 ~v~~l~~s~~~l~sgs-~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~ 1015 (1094)
++++. .++.|..||. +++.... ....+...+..+++++++.+.++...++ .|.+||. ++.
T Consensus 154 -----------l~v~~~~~~~i~~~~~-~g~~~~~-----~~~~~~~~~~~i~~~~~g~l~v~~~~~~-~i~~~~~-~g~ 214 (299)
T 2z2n_A 154 -----------LWFTENQNNAIGRITE-SGDITEF-----KIPTPASGPVGITKGNDDALWFVEIIGN-KIGRITT-SGE 214 (299)
T ss_dssp -----------EEEEETTTTEEEEECT-TCCEEEE-----ECSSTTCCEEEEEECTTSSEEEEETTTT-EEEEECT-TCC
T ss_pred -----------EEEEeCCCCEEEEEcC-CCcEEEe-----eCCCCCCcceeEEECCCCCEEEEccCCc-eEEEECC-CCc
Confidence 44433 4678999998 6665421 1122345688999999888766654444 8999999 665
Q ss_pred EEEE-ec-CCCCEEEEEEeCC-EEEEEE-cCCeEEEEECCCCcEEEEe-cccCCcceEEEEEcCCCCEEEEEeCCCcEEE
Q 001349 1016 MVGS-LP-TLSEVRAMVVSSE-LVYLGC-KGGTVEIWDQKRQIRIETL-QTGTSGKVQCMALDDNEEFLVIGTSDGRIQA 1090 (1094)
Q Consensus 1016 ~~~~-~~-~~~~v~~l~~spd-~l~sgs-~dg~I~vwd~~t~~~~~~l-~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~i 1090 (1094)
.... .. +...+.+++++++ .++++. .++.|.+||. +++. ..+ ...+...+.++++ ++|.+.++.+ .+.|..
T Consensus 215 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~ 290 (299)
T 2z2n_A 215 ITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGK 290 (299)
T ss_dssp EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEE
T ss_pred EEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEE
Confidence 4332 22 3467899999987 555555 6789999998 4543 333 2244567999999 8888777655 455655
Q ss_pred Ee
Q 001349 1091 WG 1092 (1094)
Q Consensus 1091 Wd 1092 (1094)
++
T Consensus 291 ~~ 292 (299)
T 2z2n_A 291 LT 292 (299)
T ss_dssp EE
T ss_pred EE
Confidence 55
|
| >2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.4e-13 Score=117.52 Aligned_cols=62 Identities=18% Similarity=0.230 Sum_probs=51.9
Q ss_pred CCCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHH
Q 001349 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRL 223 (1094)
Q Consensus 159 ~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~ 223 (1094)
...+++.||||++.|.+||+++|||+||+.||.+|+.. ...||.||+.+. ..+. +|..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~-~~~~l~~~ 72 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFN-PAKELMAK 72 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCE-ECHHHHHH
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCC-cHHHHHHH
Confidence 34458999999999999999999999999999999987 557999999997 4554 88655433
|
| >2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2.8e-13 Score=111.17 Aligned_cols=54 Identities=19% Similarity=0.426 Sum_probs=49.1
Q ss_pred ceeccCccccccCcEEc-CCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhH
Q 001349 163 DFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNY 218 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~-~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~ 218 (1094)
.|.||||+++|.|||++ +|||+|||.||++|+.. +.+||.+++++...+++ ||.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Li-p~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIV-EIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCE-ECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcE-ECc
Confidence 68999999999999999 99999999999999987 45699999999999997 774
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.9e-11 Score=139.29 Aligned_cols=245 Identities=8% Similarity=-0.051 Sum_probs=153.1
Q ss_pred EEEEEEeCC--EEEEEEC-C--CeEEEEecCCCcceeEEEecccCCC-eEEEEEecCCCEEEEEeCCCcEEEEECCCCce
Q 001349 816 VLSIACFRD--KIFSGHS-D--GTIKVWTGRGSILHLIQQIREHTKA-VTGLAILQSGEMLYSGSLDKTARVWSIGNEEI 889 (1094)
Q Consensus 816 V~~l~fspd--~LaSgs~-D--g~I~vWd~~t~~~~~~~~l~~H~~~-V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~ 889 (1094)
+..++|+|| +|+.... + ..|.+||+.++ .... +..+... ...+.|+|||++|+.++.++.|++||+.+++.
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~--~~~~-l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~ 114 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQ--QAVQ-LTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE 114 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTT--EEEE-CCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCC--cEEE-eecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc
Confidence 677899997 6555543 3 47888899888 3333 3333333 33478999999999999999999999998864
Q ss_pred EEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC--CEEEEE-----EcCCeEEEEEC
Q 001349 890 HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ--GKVYCG-----CQDGAIQEIDL 962 (1094)
Q Consensus 890 ~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~--~~l~sg-----s~Dg~I~iwDl 962 (1094)
..+...... ++++|+.++....++...++.. ...+++ ..++.+ ..+..|.+||+
T Consensus 115 ~~~~~~~~~--------------~~~~g~~l~~~~~~~~~~~~~~-----~~~~spdg~~~~~~~~~~~~~~~~l~~~d~ 175 (396)
T 3c5m_A 115 QVIYTVDEE--------------WKGYGTWVANSDCTKLVGIEIL-----KRDWQPLTSWEKFAEFYHTNPTCRLIKVDI 175 (396)
T ss_dssp EEEEECCTT--------------EEEEEEEEECTTSSEEEEEEEE-----GGGCCCCCSHHHHHHHHHTCCCEEEEEEET
T ss_pred EEEEecccc--------------cCCCCCEEEeccCCcccccccc-----ccccCCCCcceeeeeeccCCCcceEEEEEC
Confidence 443332110 4445544443322222222210 011111 112221 35668999999
Q ss_pred CCCceeEEeccceeecCCCCCeEEEEEeC-CccEEEEEECCC-----CEEEEEECCCCeEEEEecC--CCCEEEEEEeCC
Q 001349 963 ATGTFATIQTGHRKLLGKANPVHALQVHN-GLVYTASTSLDG-----AAVKMWSTSNYNMVGSLPT--LSEVRAMVVSSE 1034 (1094)
Q Consensus 963 ~~~~~~~~~~~~~~~~~h~~~V~sl~fs~-~~~~las~s~Dg-----~~I~iwd~~~~~~~~~~~~--~~~v~~l~~spd 1034 (1094)
.+++..... .+...+..+.|+| ++..++..+.++ ..|.+||+..+.......+ ...+..+.|+||
T Consensus 176 ~~g~~~~~~-------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spd 248 (396)
T 3c5m_A 176 ETGELEVIH-------QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPD 248 (396)
T ss_dssp TTCCEEEEE-------EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTT
T ss_pred CCCcEEeec-------cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCC
Confidence 988765322 3456788999999 777666655432 2688899876654333332 235788999998
Q ss_pred --EEEEEEcC-----CeEEEEECCCCcEEEEecccCCcceEEEEEcC-CCCEEEEEe----------------CCCcEEE
Q 001349 1035 --LVYLGCKG-----GTVEIWDQKRQIRIETLQTGTSGKVQCMALDD-NEEFLVIGT----------------SDGRIQA 1090 (1094)
Q Consensus 1035 --~l~sgs~d-----g~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Sp-dg~~L~sgs----------------~DG~I~i 1090 (1094)
.++.++.+ +.|++||+.+++...... .. ... +.|+| ||+++++++ .++.|++
T Consensus 249 g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~--~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~ 324 (396)
T 3c5m_A 249 GSAMAYVSYFKGQTDRVIYKANPETLENEEVMV--MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYV 324 (396)
T ss_dssp SSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE--CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEE
T ss_pred CCEEEEEecCCCCccceEEEEECCCCCeEEeee--CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEE
Confidence 45555433 459999999887544331 11 133 89999 999888765 3478999
Q ss_pred EeC
Q 001349 1091 WGL 1093 (1094)
Q Consensus 1091 Wdl 1093 (1094)
||+
T Consensus 325 ~d~ 327 (396)
T 3c5m_A 325 LNT 327 (396)
T ss_dssp EET
T ss_pred Eec
Confidence 986
|
| >2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.8e-12 Score=111.29 Aligned_cols=58 Identities=17% Similarity=0.248 Sum_probs=51.0
Q ss_pred CCCCCceeccCccccccCcEEc-CCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChh
Q 001349 158 HTPPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTN 217 (1094)
Q Consensus 158 ~~~~~~~~CpIc~~~~~dPv~~-~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN 217 (1094)
..+.+++.||||++.|.+|+++ +|||+||+.||.+|+.. ...||.||+.+...++. +|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~-~~ 68 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPL-SG 68 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSC-CC
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccc-cc
Confidence 3455699999999999999997 99999999999999987 56899999999887775 44
|
| >2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B | Back alignment and structure |
|---|
Probab=99.30 E-value=6.3e-13 Score=134.27 Aligned_cols=72 Identities=22% Similarity=0.408 Sum_probs=61.0
Q ss_pred CCCCceeccCccccccCcEEc-CCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHh
Q 001349 159 TPPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQ 230 (1094)
Q Consensus 159 ~~~~~~~CpIc~~~~~dPv~~-~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~ 230 (1094)
.+.+++.||||++.|.+||++ +|||+||+.||..|+..+...||.||..+.....+.||..|.++|..+...
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~ 122 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPS 122 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC--
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcc
Confidence 344589999999999999997 999999999999999976778999999986543334999999999998653
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=5e-10 Score=126.49 Aligned_cols=239 Identities=11% Similarity=0.019 Sum_probs=157.7
Q ss_pred ccccccCcEEEEeeCC------------------------CCeEEEeCC--cceeec-ccCCCcEEEEEEeCC--EEEEE
Q 001349 779 SPLAFEMVKVLSNGHD------------------------SSADFWNHR--ELVHVD-SSENGKVLSIACFRD--KIFSG 829 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~d------------------------g~I~vWd~~--~~~~~~-~~h~~~V~~l~fspd--~LaSg 829 (1094)
..+.++|..+++...+ +.|.+||.. ...... .++-..+..++++++ ++++.
T Consensus 29 va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d 108 (329)
T 3fvz_A 29 VALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTD 108 (329)
T ss_dssp EEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEE
T ss_pred EEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEE
Confidence 4456678888877776 479999986 222222 244568899999986 77788
Q ss_pred ECCCeEEEEecCCCcceeEEEe---------cccCCCeEEEEEec-CCCEEEEEe-CCCcEEEEECCCCceEEEEecccC
Q 001349 830 HSDGTIKVWTGRGSILHLIQQI---------REHTKAVTGLAILQ-SGEMLYSGS-LDKTARVWSIGNEEIHCVQVHDIK 898 (1094)
Q Consensus 830 s~Dg~I~vWd~~t~~~~~~~~l---------~~H~~~V~sv~fsp-dg~~LaSgs-~DgtI~vWdi~~~~~~~~~~~~~~ 898 (1094)
..++.|++||..+.. ..+..+ .++......++|+| +|.++++.+ .++.|++||........+......
T Consensus 109 ~~~~~v~~~~~~g~~-~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~ 187 (329)
T 3fvz_A 109 VALHQVFKLDPHSKE-GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSG 187 (329)
T ss_dssp TTTTEEEEECTTCSS-CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEECCS
T ss_pred CCCCEEEEEeCCCCe-EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCC
Confidence 889999999986541 244554 34555789999999 888888887 689999999544222111111100
Q ss_pred cc-ceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCE-EEEEEcCCeEEEEECCCCceeEEecccee
Q 001349 899 DQ-IQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGK-VYCGCQDGAIQEIDLATGTFATIQTGHRK 976 (1094)
Q Consensus 899 ~~-V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~-l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~ 976 (1094)
.. ...-...+..++++|++ +. +++...++.|++||..+|+.+..+.
T Consensus 188 ~~~~~~~~~~p~gia~d~~~----------------------------g~l~v~d~~~~~I~~~~~~~G~~~~~~~---- 235 (329)
T 3fvz_A 188 SSPRPGQFSVPHSLALVPHL----------------------------DQLCVADRENGRIQCFKTDTKEFVREIK---- 235 (329)
T ss_dssp SSCCTTEESCEEEEEEETTT----------------------------TEEEEEETTTTEEEEEETTTCCEEEEEC----
T ss_pred CCCCCcccCCCcEEEEECCC----------------------------CEEEEEECCCCEEEEEECCCCcEEEEEe----
Confidence 00 00000011222344442 23 4455567899999999888775432
Q ss_pred ecCCCCCeEEEEEeCCccEEEEEEC------CCCEEEEEECCCCeEEEEec----CCCCEEEEEEeCC--EEEEEEcCCe
Q 001349 977 LLGKANPVHALQVHNGLVYTASTSL------DGAAVKMWSTSNYNMVGSLP----TLSEVRAMVVSSE--LVYLGCKGGT 1044 (1094)
Q Consensus 977 ~~~h~~~V~sl~fs~~~~~las~s~------Dg~~I~iwd~~~~~~~~~~~----~~~~v~~l~~spd--~l~sgs~dg~ 1044 (1094)
...+...+..++|+| +..+...+. .+..|++||..+++.+..+. +...+.+++++++ .+++...++.
T Consensus 236 ~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~ 314 (329)
T 3fvz_A 236 HASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNT 314 (329)
T ss_dssp CTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCC
T ss_pred ccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCE
Confidence 134566788999999 444444321 12389999999999998874 4567999999998 5566667899
Q ss_pred EEEEECC
Q 001349 1045 VEIWDQK 1051 (1094)
Q Consensus 1045 I~vwd~~ 1051 (1094)
|++|++.
T Consensus 315 I~~~~~~ 321 (329)
T 3fvz_A 315 VWKFTLT 321 (329)
T ss_dssp EEEEEEE
T ss_pred EEEEeCC
Confidence 9999975
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.30 E-value=3.2e-10 Score=123.35 Aligned_cols=232 Identities=13% Similarity=0.050 Sum_probs=151.6
Q ss_pred cEEEEEEeCC--EEE-EEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEE
Q 001349 815 KVLSIACFRD--KIF-SGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHC 891 (1094)
Q Consensus 815 ~V~~l~fspd--~La-Sgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~ 891 (1094)
...+++++++ +++ +.+.++.|.+||..++. .......+...+.+++++++|+++++.. ++.|.+||..++....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG--TTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcc--cceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee
Confidence 7789999886 444 44678999999987652 2222223445788999999999666665 8899999988754221
Q ss_pred EEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEe
Q 001349 892 VQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQ 971 (1094)
Q Consensus 892 ~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~ 971 (1094)
... .....+..+. +.++|+. +++...++.|.+||..+......
T Consensus 102 ~~~-~~~~~p~~i~-------~~~~g~l----------------------------~v~~~~~~~i~~~~~~~~~~~~~- 144 (270)
T 1rwi_B 102 LPF-DGLNYPEGLA-------VDTQGAV----------------------------YVADRGNNRVVKLAAGSKTQTVL- 144 (270)
T ss_dssp CCC-CSCSSEEEEE-------ECTTCCE----------------------------EEEEGGGTEEEEECTTCCSCEEC-
T ss_pred eec-CCcCCCcceE-------ECCCCCE----------------------------EEEECCCCEEEEEECCCceeEee-
Confidence 111 1112223332 5555542 23334567888887655443211
Q ss_pred ccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC-EEEEEE-cCCeEEEE
Q 001349 972 TGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE-LVYLGC-KGGTVEIW 1048 (1094)
Q Consensus 972 ~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd-~l~sgs-~dg~I~vw 1048 (1094)
.......+..+++++++.+.++...++ .|.+||........... +...+.+++++++ .++++. .++.|.+|
T Consensus 145 -----~~~~~~~p~~i~~~~~g~l~v~~~~~~-~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~ 218 (270)
T 1rwi_B 145 -----PFTGLNDPDGVAVDNSGNVYVTDTDNN-RVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKL 218 (270)
T ss_dssp -----CCCSCCSCCCEEECTTCCEEEEEGGGT-EEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEE
T ss_pred -----ccccCCCceeEEEeCCCCEEEEECCCC-EEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEE
Confidence 112224567899999888776665554 89999988766544322 3367899999998 555554 57899999
Q ss_pred ECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1049 DQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1049 d~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
|........ ....+...+.+++++++|+++++...+++|++|++
T Consensus 219 ~~~~~~~~~-~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~ 262 (270)
T 1rwi_B 219 LAGSTTSTV-LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS 262 (270)
T ss_dssp CTTCSCCEE-CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred cCCCCccee-eccCCCCCceeEEECCCCCEEEEECCCCEEEEEcC
Confidence 987655433 32234457899999999998888889999999986
|
| >2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.4e-12 Score=110.95 Aligned_cols=56 Identities=23% Similarity=0.580 Sum_probs=48.5
Q ss_pred CCCCCceeccCccccccCcEEcCCcccccHHhHHHHHHh--CCCCCCCCCcCCCCCCC
Q 001349 158 HTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIER--GNSSCPITRQKLSSTKL 213 (1094)
Q Consensus 158 ~~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~--~~~~CP~c~~~~~~~~~ 213 (1094)
..+++++.||||++.|.+|++++|||+||+.||..|+.. +...||.||+.+...++
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 345669999999999999999999999999999999973 35579999999876654
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.5e-10 Score=141.58 Aligned_cols=277 Identities=9% Similarity=0.028 Sum_probs=168.4
Q ss_pred cccccccccCcEEEEeeCCCC---eEEEeCCc------ceee-------cccCCCcEEEEEEeCC--EEEEEECC-----
Q 001349 776 RKYSPLAFEMVKVLSNGHDSS---ADFWNHRE------LVHV-------DSSENGKVLSIACFRD--KIFSGHSD----- 832 (1094)
Q Consensus 776 ~~~~~~~~d~~~l~s~s~dg~---I~vWd~~~------~~~~-------~~~h~~~V~~l~fspd--~LaSgs~D----- 832 (1094)
.......++|.+++....++. -.+|.... .... ..+|+..+..++|||| +|+.++.+
T Consensus 109 ~~~~~p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~ 188 (741)
T 1yr2_A 109 ERFGLPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDW 188 (741)
T ss_dssp CEECCCEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSE
T ss_pred cccCCCEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCce
Confidence 334455689998887665543 55675421 1122 1234447889999997 66655443
Q ss_pred CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCc--------------EEEEECCCCce--EEEEe-c
Q 001349 833 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKT--------------ARVWSIGNEEI--HCVQV-H 895 (1094)
Q Consensus 833 g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~Dgt--------------I~vWdi~~~~~--~~~~~-~ 895 (1094)
.+|++||+.++. .+.. ..+...+..++|+|| +.|+.++.|+. |++|++.++.. ..+.. .
T Consensus 189 ~~i~v~dl~tg~--~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~ 264 (741)
T 1yr2_A 189 RTVKFVGVADGK--PLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATP 264 (741)
T ss_dssp EEEEEEETTTCC--EEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCT
T ss_pred EEEEEEECCCCC--CCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccC
Confidence 369999999984 3332 112222357899999 99998887665 88999987652 12221 1
Q ss_pred ccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCC--ceeEEecc
Q 001349 896 DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATG--TFATIQTG 973 (1094)
Q Consensus 896 ~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~--~~~~~~~~ 973 (1094)
.+...+..+. |+|||+.+++...++. ..+..|.+||+.++ ...
T Consensus 265 ~~~~~~~~~~-------~SpDG~~l~~~~~~~~-----------------------~~~~~l~~~d~~~~~~~~~----- 309 (741)
T 1yr2_A 265 ELPKRGHGAS-------VSSDGRWVVITSSEGT-----------------------DPVNTVHVARVTNGKIGPV----- 309 (741)
T ss_dssp TCTTCEEEEE-------ECTTSCEEEEEEECTT-----------------------CSCCEEEEEEEETTEECCC-----
T ss_pred CCCeEEEEEE-------ECCCCCEEEEEEEccC-----------------------CCcceEEEEECCCCCCccc-----
Confidence 1112344444 8999987654433220 02347889998876 301
Q ss_pred ceeecCCCCCeEEEEEeCCccEEEEEECCC---CEEEEEECCCC--eEEEEecC-CCCEEEEEEeCC-EEEEEEcCCeEE
Q 001349 974 HRKLLGKANPVHALQVHNGLVYTASTSLDG---AAVKMWSTSNY--NMVGSLPT-LSEVRAMVVSSE-LVYLGCKGGTVE 1046 (1094)
Q Consensus 974 ~~~~~~h~~~V~sl~fs~~~~~las~s~Dg---~~I~iwd~~~~--~~~~~~~~-~~~v~~l~~spd-~l~sgs~dg~I~ 1046 (1094)
..+..+...+....+ +++..++..+.++ ..|.+||+.++ .....+.+ ...+..+.++.+ ++++...|+..+
T Consensus 310 -~~l~~~~~~~~~~~~-~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~ 387 (741)
T 1yr2_A 310 -TALIPDLKAQWDFVD-GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQ 387 (741)
T ss_dssp -EEEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEE
T ss_pred -EEecCCCCceEEEEe-ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEE
Confidence 223333334444433 5666555555432 36999999874 33333443 344667888877 677778888877
Q ss_pred EEECC-CCcEEEEecccCCcceEEEEEcCCCCEEE-EEe---CCCcEEEEeC
Q 001349 1047 IWDQK-RQIRIETLQTGTSGKVQCMALDDNEEFLV-IGT---SDGRIQAWGL 1093 (1094)
Q Consensus 1047 vwd~~-t~~~~~~l~~~h~~~I~~l~~Spdg~~L~-sgs---~DG~I~iWdl 1093 (1094)
||.+. +++....+...+.+.|..+.++||++.|+ +.+ ..++|++||+
T Consensus 388 l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 439 (741)
T 1yr2_A 388 VLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP 439 (741)
T ss_dssp EEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred EEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence 77554 46666666433466789999999987655 322 3478999986
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.9e-10 Score=127.61 Aligned_cols=223 Identities=10% Similarity=0.051 Sum_probs=137.5
Q ss_pred CCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCC---C--cEEEEECCCCceEEEEecccCccceeeee
Q 001349 832 DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD---K--TARVWSIGNEEIHCVQVHDIKDQIQNLAV 906 (1094)
Q Consensus 832 Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D---g--tI~vWdi~~~~~~~~~~~~~~~~V~~v~~ 906 (1094)
++.|.+||+.++.. ..+ ..+..+.|||||++|+.++.+ + .|.+||+.+++...+... .. +..+.
T Consensus 42 ~~~l~~~d~~~~~~---~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~--~~-~~~~~- 110 (347)
T 2gop_A 42 ENTIVIENLKNNAR---RFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA--KN-IRSLE- 110 (347)
T ss_dssp EEEEEEEETTTCCE---EEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE--SE-EEEEE-
T ss_pred cceEEEEeCCCCce---EEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC--CC-cccee-
Confidence 67899999998842 223 568899999999999988764 3 378888888764443332 22 55555
Q ss_pred cCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEe-CCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeE
Q 001349 907 SNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV-QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVH 985 (1094)
Q Consensus 907 ~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s-~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~ 985 (1094)
|+|||+.++....+..-. .....+..+.+. ++.-+.......|.+||+.+++....+. . . .+.
T Consensus 111 ------wspdg~~l~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~------~-~-~~~ 174 (347)
T 2gop_A 111 ------WNEDSRKLLIVGFKRRED--EDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFE------K-P-RFS 174 (347)
T ss_dssp ------ECTTSSEEEEEEECCCC-----------CCCC---------CEEEEEEEETTTTEEEEEEE------E-E-TTC
T ss_pred ------ECCCCCEEEEEEccCCCc--CCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeec------C-C-Ccc
Confidence 999999888776431000 000000011110 1111111234679999999887632221 1 2 577
Q ss_pred EEEEeCCccEEEEEECCC--------CEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcC--------CeEEE
Q 001349 986 ALQVHNGLVYTASTSLDG--------AAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKG--------GTVEI 1047 (1094)
Q Consensus 986 sl~fs~~~~~las~s~Dg--------~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~d--------g~I~v 1047 (1094)
.+.|+|++ +++++..++ ..|.++| +++......+ ..+..+ +|| .++.++.+ +.|++
T Consensus 175 ~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~ 248 (347)
T 2gop_A 175 SGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYI 248 (347)
T ss_dssp EEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEE
T ss_pred cccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEE
Confidence 89999999 766665442 1455555 5554333334 445444 776 56665533 47888
Q ss_pred EECCCCcEEEEecccCCcceEE-EEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1048 WDQKRQIRIETLQTGTSGKVQC-MALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1048 wd~~t~~~~~~l~~~h~~~I~~-l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
|| +++. ..+..+|...+.. +.|+ || ++++++.+|.+++| +
T Consensus 249 ~d--~~~~-~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~ 289 (347)
T 2gop_A 249 YD--GKEV-MGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-I 289 (347)
T ss_dssp EC--SSCE-EESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-E
T ss_pred EC--CCce-EeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-E
Confidence 88 5554 3443566778886 9999 88 99999999999999 6
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.2e-11 Score=150.54 Aligned_cols=314 Identities=13% Similarity=0.091 Sum_probs=222.0
Q ss_pred HHHHhhhccccchHhHHHHHHHHHHHHHhc--cchHHHHhhchhHHHhhhHhhhccC-CchHHHHHHHHHHHhhcccccc
Q 001349 271 HAITSLCMSEILNESEMAVLQIERCWLEAS--MELDIQIMLSKPAVINGFVEILFNS-VDPRVLEATIFLLSELGSRDKS 347 (1094)
Q Consensus 271 ~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~--~~~~~~~~~~~~~v~~~~v~~L~~s-~~~~v~~~av~~L~~l~s~~~~ 347 (1094)
..+..+..++.-.-++.|+..+.+++.... .+..+...++...++..|+.+|... .+.++++.|+..|.+| +.+..
T Consensus 333 ~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayL-S~~~~ 411 (810)
T 3now_A 333 DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYL-TLDAE 411 (810)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHH-TTSHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH-hCCcH
Confidence 334444433332235667777777765332 2222332344456677788888775 3889999999999999 66777
Q ss_pred hhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCCh------------------------------------HHH
Q 001349 348 VIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPST------------------------------------RTL 387 (1094)
Q Consensus 348 ~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~------------------------------------~~~ 387 (1094)
++..|+...+.++.|+.+|+++ ...|+.+|.+|.... ..+
T Consensus 412 vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~V 491 (810)
T 3now_A 412 CKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVL 491 (810)
T ss_dssp HHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHH
Confidence 8889998788999999999987 578999999996532 233
Q ss_pred HHhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHH
Q 001349 388 IEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVG 467 (1094)
Q Consensus 388 ~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 467 (1094)
+.-|.+|+|+.+|.+++..- +..|+.+|.+| +.+.+++..+++.|++|.|+..|++|+.+.|..|+.
T Consensus 492 veaGaVp~LV~LL~s~s~~v-------qe~Aa~aL~NL------A~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~ 558 (810)
T 3now_A 492 ANEGITTALCALAKTESHNS-------QELIARVLNAV------CGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQ 558 (810)
T ss_dssp HHTTHHHHHHHHHTCCCHHH-------HHHHHHHHHHH------HTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHCcCHHHHHHHHcCCCHHH-------HHHHHHHHHHH------cCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHH
Confidence 44456699999999865321 55666667777 445679999999999999999999999999999999
Q ss_pred HHHHHhhccCcchhh--HhhhcCchhHHHHHHhcCC-chhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHH
Q 001349 468 ILLRCMQEDGKCRNS--IADKAELAPVMESFMAASD-GERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLV 544 (1094)
Q Consensus 468 ~l~~~~~~~~~~r~~--~~~~~~~~~~~~l~~~~~~-~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~ 544 (1094)
.|.+++.......-+ ....+.++||++||.+... ..++.|+..|..|...+ .+..+.|-++|.++. |+.
T Consensus 559 AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~-----d~~~~~Ii~aG~l~~---Lv~ 630 (810)
T 3now_A 559 ALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMN-----ESVRQRIIKEQGVSK---IEY 630 (810)
T ss_dssp HHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-----HHHHHHHHHTTHHHH---HHH
T ss_pred HHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC-----HHHHHHHHHcCCHHH---HHH
Confidence 998765543221111 0123589999999986533 44567888888887763 344455667787766 777
Q ss_pred HHhhcCCccchhHHHHHHhhhcccCCCCCCccH--HHHHHHHHHHhhcCCChHHHHHHHHHHHhccc
Q 001349 545 YLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYR--EEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 609 (1094)
Q Consensus 545 ~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~r--eea~~~~~~~l~~~~~~~~~~~~~~~~~~l~g 609 (1094)
+|.+..+.-+--++.+|.+|-.-.+.+. .+- .+++..|+..|... ...+|..|+.||.+|+.
T Consensus 631 LL~s~~~~Vq~~A~~~L~NLa~~~~~~~--~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALanLt~ 694 (810)
T 3now_A 631 YLMEDHLYLTRAAAQCLCNLVMSEDVIK--MFEGNNDRVKFLALLCEDE-DEETATACAGALAIITS 694 (810)
T ss_dssp HHHSCCTTHHHHHHHHHHHHTTSHHHHH--HHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHhCChHHHH--HHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhC
Confidence 7777777777778888888866322221 222 25888898888775 45789999999999874
|
| >4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-12 Score=128.13 Aligned_cols=63 Identities=29% Similarity=0.581 Sum_probs=53.3
Q ss_pred ceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHH
Q 001349 163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQE 229 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~ 229 (1094)
++.||||++.|.+||+++|||+||+.||..|+.. ...||.||+.+... . +|..+...|+.+..
T Consensus 53 ~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~--~-~~~~~~~~i~~~~~ 115 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSK--T-YSLVLDNCINKMVN 115 (138)
T ss_dssp HSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE--E-ECHHHHHHHHHHHT
T ss_pred cCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCC--C-CccchhHHHHHHHH
Confidence 7899999999999999999999999999999987 55799999988643 2 46677777776653
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.28 E-value=2.3e-10 Score=128.95 Aligned_cols=234 Identities=12% Similarity=0.132 Sum_probs=159.7
Q ss_pred CcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEE
Q 001349 814 GKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHC 891 (1094)
Q Consensus 814 ~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~ 891 (1094)
..|.++.|+++ .++..+.++.++.| .+ .....+..+...+.+++|+++|++++++..++.|.+||..+++...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~ 80 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TA--EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR 80 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---EC--EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---cc--ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE
Confidence 44667778875 55666788999999 33 4566677788888999999999988888899999999999876443
Q ss_pred EEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcC----CeEEEEECCCCce
Q 001349 892 VQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQD----GAIQEIDLATGTF 967 (1094)
Q Consensus 892 ~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~D----g~I~iwDl~~~~~ 967 (1094)
... .....+.++. ++++|+. +++...+ +.|.+||..++..
T Consensus 81 ~~~-~~~~~~~~i~-------~~~dg~l----------------------------~v~~~~~~~~~~~i~~~d~~~~~~ 124 (333)
T 2dg1_A 81 PFV-SHKANPAAIK-------IHKDGRL----------------------------FVCYLGDFKSTGGIFAATENGDNL 124 (333)
T ss_dssp EEE-CSSSSEEEEE-------ECTTSCE----------------------------EEEECTTSSSCCEEEEECTTSCSC
T ss_pred Eee-CCCCCcceEE-------ECCCCcE----------------------------EEEeCCCCCCCceEEEEeCCCCEE
Confidence 321 2234455554 6666653 2233333 5899999888765
Q ss_pred eEEeccceeecCCCCCeEEEEEeCCccEEEEEECC-----CCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEE-
Q 001349 968 ATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLD-----GAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLG- 1039 (1094)
Q Consensus 968 ~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~D-----g~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sg- 1039 (1094)
...... ..+...+..+.+++++.+.++...+ ...|..||..+++......+...+..++|+|+ .++.+
T Consensus 125 ~~~~~~----~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~ 200 (333)
T 2dg1_A 125 QDIIED----LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTE 200 (333)
T ss_dssp EEEECS----SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred EEEEcc----CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEe
Confidence 422211 1234578999999999887776431 12577777665554433334456789999998 45554
Q ss_pred EcCCeEEEEECCC-CcEEEEe-------cccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1040 CKGGTVEIWDQKR-QIRIETL-------QTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1040 s~dg~I~vwd~~t-~~~~~~l-------~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
+.++.|++||..+ +..+..+ ..++ ..+..++++++|+++++...++.|.+||.
T Consensus 201 ~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 201 TTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK 261 (333)
T ss_dssp GGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred CCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC
Confidence 4678999999864 3322211 0122 46889999999998888878899999985
|
| >2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.5e-12 Score=105.72 Aligned_cols=47 Identities=28% Similarity=0.638 Sum_probs=41.8
Q ss_pred CCCCCceeccCccccccCcEEcCCcccccHHhHHHHHHh--CCCCCCCC
Q 001349 158 HTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIER--GNSSCPIT 204 (1094)
Q Consensus 158 ~~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~--~~~~CP~c 204 (1094)
..+.+++.||||++.|.+||+++|||+||+.||.+|+.. +...||.|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 345669999999999999999999999999999999985 35579998
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-10 Score=138.71 Aligned_cols=321 Identities=13% Similarity=0.079 Sum_probs=220.1
Q ss_pred HHHHHHhhhccccchHhHHHHHHHHHHHHHhccc-hHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhccc-cc
Q 001349 269 LKHAITSLCMSEILNESEMAVLQIERCWLEASME-LDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSR-DK 346 (1094)
Q Consensus 269 l~~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~-~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~-~~ 346 (1094)
+...|..|.+. ..+.++.|+..|..++....++ ..|...++.|. ||.+| .|.+..+++.|+.+|.+|+.. +.
T Consensus 50 i~~LV~~L~s~-~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~----LV~LL-~s~~~~vq~~Aa~AL~nLa~~~~~ 123 (584)
T 3l6x_A 50 LPEVIAMLGFR-LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPV----LVGLL-DHPKKEVHLGACGALKNISFGRDQ 123 (584)
T ss_dssp HHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH----HHHGG-GCSSHHHHHHHHHHHHHHTSSSCH
T ss_pred HHHHHHHHCCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHH----HHHHH-CCCCHHHHHHHHHHHHHHHccCCH
Confidence 45556666544 3345678888888888755554 44555556665 44444 568899999999999999875 57
Q ss_pred chhhhhccCCCcHHHHHHHHhcC-----hHHHHHHHHhcCCChHHHHHhh--hhHHHHHHHH---hccccc----ccc--
Q 001349 347 SVIHTLTRVESDVERIVALFKKG-----LLEAVVLIDLLRPSTRTLIEMD--MMESLMTVIK---KKEEDF----LKM-- 410 (1094)
Q Consensus 347 ~~~~~i~~~~~~~~~L~~lLk~g-----~~~Aa~~l~~L~~~~~~~~~~~--~~~~Ll~~l~---~~~~~~----~~~-- 410 (1094)
.++..|.. .|+++.|+.+|+++ ...|+.+|++|+..++++..|. .+|+|+++|- +|..+. .+.
T Consensus 124 ~nk~~I~~-~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~ 202 (584)
T 3l6x_A 124 DNKIAIKN-CDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRH 202 (584)
T ss_dssp HHHHHHHH-TTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------C
T ss_pred HHHHHHHH-cCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccc
Confidence 78888875 57999999999984 4677889999999888887774 3499999873 221110 000
Q ss_pred cc--CchhhHHHHHHHHhcCCcccccc-cchhhhccchh-HHHHHHhhhc------ccHHHHHHHHHHHHHHhhc-----
Q 001349 411 CL--KPKSVSVLLLGQMIGDSEESIVS-SIANTIVSSKV-FESVISSLEA------EWAEERIAAVGILLRCMQE----- 475 (1094)
Q Consensus 411 ~~--~~~~aa~~~l~~l~~~~~~~~~~-~~~~~~~~~~~-~~~l~~~l~~------~~~~~~~~~~~~l~~~~~~----- 475 (1094)
.. .-...|...|.+| +... +++.+|+..+| ++.||..++. .+.+..++|+.+|.++.-.
T Consensus 203 ~~d~~V~~nAa~~L~NL------s~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~ 276 (584)
T 3l6x_A 203 IEWESVLTNTAGCLRNV------SSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREI 276 (584)
T ss_dssp CCCHHHHHHHHHHHHHH------TSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHS
T ss_pred cccHHHHHHHHHHHHHH------hcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccc
Confidence 00 1123455556666 3333 45888887555 5899999985 3567788898888553211
Q ss_pred --------------------cCcchhhHhhhcCchhHHHHHHh-cCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcC
Q 001349 476 --------------------DGKCRNSIADKAELAPVMESFMA-ASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEG 534 (1094)
Q Consensus 476 --------------------~~~~r~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~ 534 (1094)
+...-..+.+...+++++.||+. .+...++.|+.+|.+|...+ ......+...|.+++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~-~~~~~~~~~~v~~~~ 355 (584)
T 3l6x_A 277 PQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGR-WTYGRYIRSALRQEK 355 (584)
T ss_dssp TTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHTSHH
T ss_pred cchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCC-ccccHHHHHHHHHcC
Confidence 01111222333456678888865 46677888999999997643 222344555677777
Q ss_pred cchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCC-------ChHHHHHHHHHHHhc
Q 001349 535 TYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSD-------YPAAQLAAAKTIVSL 607 (1094)
Q Consensus 535 ~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~-------~~~~~~~~~~~~~~l 607 (1094)
+++. |+.+|++..++-+--++.+|-.|..- +........+++..||..|.+++ ...++..|+.+|.|+
T Consensus 356 glp~---Lv~LL~s~~~~v~~~A~~aL~nLs~~--~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL 430 (584)
T 3l6x_A 356 ALSA---IADLLTNEHERVVKAASGALRNLAVD--ARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEV 430 (584)
T ss_dssp HHHH---HHHGGGCSCHHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHH
T ss_pred cHHH---HHHHHcCCCHHHHHHHHHHHHHHhCC--hhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHH
Confidence 7666 88899988888888899999998863 33344558999999999999875 235677888999887
Q ss_pred c
Q 001349 608 Q 608 (1094)
Q Consensus 608 ~ 608 (1094)
.
T Consensus 431 ~ 431 (584)
T 3l6x_A 431 I 431 (584)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.27 E-value=7.2e-09 Score=119.12 Aligned_cols=263 Identities=10% Similarity=-0.034 Sum_probs=162.7
Q ss_pred ccCcEEEEeeC--CC---CeEEEeCCcc--eeecccCCCcEEEEEEeCC--EEEEEE----------CCCeEEEEecCCC
Q 001349 783 FEMVKVLSNGH--DS---SADFWNHREL--VHVDSSENGKVLSIACFRD--KIFSGH----------SDGTIKVWTGRGS 843 (1094)
Q Consensus 783 ~d~~~l~s~s~--dg---~I~vWd~~~~--~~~~~~h~~~V~~l~fspd--~LaSgs----------~Dg~I~vWd~~t~ 843 (1094)
+++.+++.... .+ +|.+||..+. ...+.....+ .++|+|| +++.+. .+++|.+||..+.
T Consensus 30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~ 107 (373)
T 2mad_H 30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF 107 (373)
T ss_pred CCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC
Confidence 56776655543 22 7899998743 2233222233 9999997 666654 3688999999887
Q ss_pred cceeEEEeccc-------CCCeEEEEEecCCCEEEEEeC--CCcEEEEECCCCceEEEEe-cccCccceeeeecCceEEE
Q 001349 844 ILHLIQQIREH-------TKAVTGLAILQSGEMLYSGSL--DKTARVWSIGNEEIHCVQV-HDIKDQIQNLAVSNSILCF 913 (1094)
Q Consensus 844 ~~~~~~~l~~H-------~~~V~sv~fspdg~~LaSgs~--DgtI~vWdi~~~~~~~~~~-~~~~~~V~~v~~~~~~~~f 913 (1094)
+.+.++.-. ...-..+.|+|||++|+++.. +++|.++| .+++.. .. ...... + .+
T Consensus 108 --~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~--~~~i~~~~~---~-------~~ 172 (373)
T 2mad_H 108 --LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSD--DQLLSSPTC---Y-------HI 172 (373)
T ss_pred --cEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEE--eEEcCCCce---E-------EE
Confidence 555554321 123457999999999999874 57899999 887532 22 211111 1 14
Q ss_pred eeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCe-EEEEEeCC
Q 001349 914 IPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPV-HALQVHNG 992 (1094)
Q Consensus 914 spdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V-~sl~fs~~ 992 (1094)
.|++.. .+++.+.||.+.+||. +++..........+ ....++ ....+.++
T Consensus 173 ~~~~~~---------------------------~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~-~~~~p~~~~~~~~~~ 223 (373)
T 2mad_H 173 HPGAPS---------------------------TFYLLCAQGGLAKTDH-AGGAAGAGLVGAML-TAAQNLLTQPAQANK 223 (373)
T ss_pred EeCCCc---------------------------eEEEEcCCCCEEEEEC-CCcEEEEEeccccc-cCCcceeecceeEec
Confidence 444432 3556678899999999 77765221100001 111121 22344443
Q ss_pred ccEEEEEECCCCEEEEEECCCCe--EEEEecC-----------CCCEEEEEEeCC--EEEEEEc----------CCeEEE
Q 001349 993 LVYTASTSLDGAAVKMWSTSNYN--MVGSLPT-----------LSEVRAMVVSSE--LVYLGCK----------GGTVEI 1047 (1094)
Q Consensus 993 ~~~las~s~Dg~~I~iwd~~~~~--~~~~~~~-----------~~~v~~l~~spd--~l~sgs~----------dg~I~v 1047 (1094)
+..++..+.++ .+.+.|+.++. .+..+.. ......+.+++| .++++.. ++.|.+
T Consensus 224 ~~~~~~~~~~~-~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~V 302 (373)
T 2mad_H 224 SGRIVWPVYSG-KILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS 302 (373)
T ss_pred CCEEEEEcCCc-eEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEE
Confidence 32222222344 89999987542 2233321 223444778887 5665543 368999
Q ss_pred EECCCCcEEEEecccCCcceEEEEEcCCCC-EEEEEe-CCCcEEEEeCC
Q 001349 1048 WDQKRQIRIETLQTGTSGKVQCMALDDNEE-FLVIGT-SDGRIQAWGLS 1094 (1094)
Q Consensus 1048 wd~~t~~~~~~l~~~h~~~I~~l~~Spdg~-~L~sgs-~DG~I~iWdls 1094 (1094)
+|..+++.+.++..++ ...+++|+|||+ .++++. .++.|.+||+.
T Consensus 303 ID~~t~~vv~~i~~g~--~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~ 349 (373)
T 2mad_H 303 VTGLVGQTSSQISLGH--DVDAISVAQDGGPDLYALSAGTEVLHIYDAG 349 (373)
T ss_pred EECCCCEEEEEEECCC--CcCeEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence 9999999999996443 689999999999 788877 58999999973
|
| >1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-12 Score=123.58 Aligned_cols=67 Identities=16% Similarity=0.457 Sum_probs=58.7
Q ss_pred CceeccCccccccCcEEcCCcccccHHhHHHHHHhCC--CCCCCCCcCCCCCCCCChhHHHHHHHHHHHH
Q 001349 162 KDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGN--SSCPITRQKLSSTKLPKTNYVLKRLIASWQE 229 (1094)
Q Consensus 162 ~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~--~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~ 229 (1094)
+++.||||++.|.+|++++|||+||+.||..|+.... ..||.||..+....+. +|..+.++++.+..
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~-~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ-ESTRFSQLVEELLK 88 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCB-CCCSSSHHHHHHHH
T ss_pred CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcC-ccHHHHHHHHHHHH
Confidence 3789999999999999999999999999999998632 4799999999988886 88888777777764
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-10 Score=137.44 Aligned_cols=318 Identities=14% Similarity=0.092 Sum_probs=217.0
Q ss_pred HHHHHhhhccccchHhHHHHHHHHHHHHHhccch-HHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccch
Q 001349 270 KHAITSLCMSEILNESEMAVLQIERCWLEASMEL-DIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSV 348 (1094)
Q Consensus 270 ~~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~~-~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~ 348 (1094)
...+..|.+. ..+.++.|+..++.++.....++ .+...++.|. ++++|. +.++.+++.|+..|.+|+..++.+
T Consensus 5 ~~lv~~L~s~-~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~----Lv~lL~-s~~~~~~~~A~~aL~nLa~~~~~~ 78 (457)
T 1xm9_A 5 PKAVQYLSSQ-DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICK----LVDLLR-SPNQNVQQAAAGALRNLVFRSTTN 78 (457)
T ss_dssp HHHHHHHHSS-CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHH----HHHHTT-SSCHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHH----HHHHHc-CCCHHHHHHHHHHHHHHhcCCHHH
Confidence 3445555543 33557888888888885444444 5555555544 555544 678899999999999998877788
Q ss_pred hhhhccCCCcHHHHHHHHh-cC----hHHHHHHHHhcCCChHH---HHHhhhhHHHHHHHHh--------cccccccccc
Q 001349 349 IHTLTRVESDVERIVALFK-KG----LLEAVVLIDLLRPSTRT---LIEMDMMESLMTVIKK--------KEEDFLKMCL 412 (1094)
Q Consensus 349 ~~~i~~~~~~~~~L~~lLk-~g----~~~Aa~~l~~L~~~~~~---~~~~~~~~~Ll~~l~~--------~~~~~~~~~~ 412 (1094)
+..|.+ .|+++.|+.+|+ ++ ..+|+.+|++|+..+++ +.. +.+|+|+.+|.. ...+ .+-..
T Consensus 79 k~~i~~-~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~-~~e~~ 155 (457)
T 1xm9_A 79 KLETRR-QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNM-SREVV 155 (457)
T ss_dssp HHHHHH-TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC----------CC
T ss_pred HHHHHH-cCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccch-hcccc
Confidence 888875 479999999998 76 67888999999665544 445 777999999942 1100 00000
Q ss_pred Cc--hhhHHHHHHHHhcCCcccccccchhhhccc-hhHHHHHHhhhcc------cHHHHHHHHHHHHHHhh---------
Q 001349 413 KP--KSVSVLLLGQMIGDSEESIVSSIANTIVSS-KVFESVISSLEAE------WAEERIAAVGILLRCMQ--------- 474 (1094)
Q Consensus 413 ~~--~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~------~~~~~~~~~~~l~~~~~--------- 474 (1094)
.+ ...|...|.+| +.+++++..+++. |+++.|+..++.+ +.+..+.++.+|..+.-
T Consensus 156 ~~~v~~~a~~aL~nL------s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~ 229 (457)
T 1xm9_A 156 DPEVFFNATGCLRNL------SSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTR 229 (457)
T ss_dssp CHHHHHHHHHHHHHH------TTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCH
T ss_pred cHHHHHHHHHHHHHH------ccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcch
Confidence 11 12455567666 2336889999997 9999999999863 33445666666544320
Q ss_pred -----------------------------------------ccCcchhhHhhhcCchhHHHHHHhc-CCchhHHHHHHHH
Q 001349 475 -----------------------------------------EDGKCRNSIADKAELAPVMESFMAA-SDGERFEIVCFLS 512 (1094)
Q Consensus 475 -----------------------------------------~~~~~r~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~l~ 512 (1094)
.+......+.+.+.+++++.||... +...++.|...|.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~ 309 (457)
T 1xm9_A 230 YRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQ 309 (457)
T ss_dssp HHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred hhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 0111223455566778899988775 4566777899999
Q ss_pred HHHhccccchhHHH-HHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcC
Q 001349 513 ELVKLNRRTFNEQI-LHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNS 591 (1094)
Q Consensus 513 el~~~~r~~~~~~~-l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~ 591 (1094)
.|...+... ..++ ...|.+.|.++. |+.+|++...+-+--|+.+|-.|.. +++.....++++|..|++.|..+
T Consensus 310 nl~~~~~~~-~~~~~~~~v~~~~~l~~---Lv~LL~~~~~~v~~~A~~aL~nls~--~~~~~~~i~~~~i~~Lv~lL~~~ 383 (457)
T 1xm9_A 310 NLTASKGLM-SSGMSQLIGLKEKGLPQ---IARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLTSH 383 (457)
T ss_dssp HHTTCSSSH-HHHHHHHHHTTSCCHHH---HHHHTTCSCHHHHHHHHHHHHHHHT--SGGGHHHHHHHTHHHHHHTTTSC
T ss_pred HhccCcCcc-hHHHHHHHHHHcCCchH---HHHHHhCCCHhHHHHHHHHHHHHhc--CHHHHHHHHHhhhHHHHHhccCC
Confidence 987654322 2233 345667888776 8889988888777788888888865 44444555789999999999988
Q ss_pred CC-----hHHHHHHHHHHHhcc
Q 001349 592 DY-----PAAQLAAAKTIVSLQ 608 (1094)
Q Consensus 592 ~~-----~~~~~~~~~~~~~l~ 608 (1094)
+. ..++..++.+|.++.
T Consensus 384 ~~~~~~~~~v~~~~l~~l~ni~ 405 (457)
T 1xm9_A 384 TGNTSNSEDILSSACYTVRNLM 405 (457)
T ss_dssp CSCSTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHH
Confidence 65 246777888888864
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-09 Score=124.96 Aligned_cols=284 Identities=13% Similarity=0.114 Sum_probs=181.5
Q ss_pred cccCcEEEEeeC-----CCCeEEEeCCc--ceeecccCCCcEEEEEEeCC--EEEEEE----------CCCeEEEEecCC
Q 001349 782 AFEMVKVLSNGH-----DSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGH----------SDGTIKVWTGRG 842 (1094)
Q Consensus 782 ~~d~~~l~s~s~-----dg~I~vWd~~~--~~~~~~~h~~~V~~l~fspd--~LaSgs----------~Dg~I~vWd~~t 842 (1094)
.+++.+++.... ++.|.+.|..+ .+........+ . ++++|| +++.++ .++.|.+||..+
T Consensus 41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t 118 (386)
T 3sjl_D 41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT 118 (386)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence 467877666644 67899999873 33333333334 4 999997 454443 468899999999
Q ss_pred CcceeEEEeccc-------CCCeEEEEEecCCCEEEEEeC--CCcEEEEECCCCceEEEEecccCccceeee-ecC-ceE
Q 001349 843 SILHLIQQIREH-------TKAVTGLAILQSGEMLYSGSL--DKTARVWSIGNEEIHCVQVHDIKDQIQNLA-VSN-SIL 911 (1094)
Q Consensus 843 ~~~~~~~~l~~H-------~~~V~sv~fspdg~~LaSgs~--DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~-~~~-~~~ 911 (1094)
+ +.+.++.-. ...-..+.|+|||++++++.. +++|.++|+.+++.. ........ ..+. ... ...
T Consensus 119 ~--~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv--~tI~v~g~-~~~~P~g~~~~~ 193 (386)
T 3sjl_D 119 L--LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFK--RMLDVPDC-YHIFPTAPDTFF 193 (386)
T ss_dssp C--CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEE--EEEECCSE-EEEEEEETTEEE
T ss_pred C--eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEE--EEEECCCc-ceeecCCCceeE
Confidence 8 566665421 124567999999999998864 689999999998632 22222211 1110 000 123
Q ss_pred EEeeCCCeEEEEEeC-CeEE-----EEcCCC-Cce-EEEEe--CCEEEEEEcCCeEEEEECCCCceeEEeccceee----
Q 001349 912 CFIPQGAGIKVHLRN-GKTK-----LLNSSK-YPK-CLALV--QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKL---- 977 (1094)
Q Consensus 912 ~fspdg~~l~~~~~~-g~i~-----l~~~~~-~v~-~l~~s--~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~---- 977 (1094)
.+++||+.+.+.... +.+. +++... .+. ...|. +++++..+.+|.|.+.|..++....... ...+
T Consensus 194 ~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~-~~~~~~~~ 272 (386)
T 3sjl_D 194 MHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPA-VEALTEAE 272 (386)
T ss_dssp EEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCC-EESSCHHH
T ss_pred EECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecc-eecccccc
Confidence 578888887777654 5542 122111 111 12443 5777778889999999998765321100 0000
Q ss_pred --cC-CCCCeEEEEEeCCccEEEEEEC---------CCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC---EEEEEE-c
Q 001349 978 --LG-KANPVHALQVHNGLVYTASTSL---------DGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE---LVYLGC-K 1041 (1094)
Q Consensus 978 --~~-h~~~V~sl~fs~~~~~las~s~---------Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd---~l~sgs-~ 1041 (1094)
.+ .......+++++++..+..... .++.|.++|+.+++.+.++.-...+.++++++| ++++.. .
T Consensus 273 ~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~ 352 (386)
T 3sjl_D 273 RADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTG 352 (386)
T ss_dssp HHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETT
T ss_pred ccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCC
Confidence 00 1122335677876665555432 124899999999999999987778899999998 566654 4
Q ss_pred CCeEEEEECCCCcEEEEecccCCcceEEEEEcCC
Q 001349 1042 GGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDN 1075 (1094)
Q Consensus 1042 dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spd 1075 (1094)
++.|.|+|..+++.+.++.. .+.-+.+.+++|
T Consensus 353 ~~~VsViD~~t~k~~~~i~~--~~~p~~l~~s~d 384 (386)
T 3sjl_D 353 DKTLYIHDAESGEELRSVNQ--LGHGPQVITTAD 384 (386)
T ss_dssp TTEEEEEETTTCCEEEEECC--CCSSCCEEEECC
T ss_pred CCeEEEEECCCCcEEEEecC--CCCCceeEECCc
Confidence 89999999999999999953 334566777766
|
| >1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-12 Score=123.73 Aligned_cols=71 Identities=24% Similarity=0.309 Sum_probs=60.6
Q ss_pred CCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHh
Q 001349 160 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQ 230 (1094)
Q Consensus 160 ~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~ 230 (1094)
+++++.||||+++|.+||+++|||+||+.||.+|+..+...||.||..+....+..++..+.+++..+.-.
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v~ 90 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMVK 90 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEEE
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcCC
Confidence 34589999999999999999999999999999999986668999999998877754777787777665543
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.24 E-value=5.7e-11 Score=142.87 Aligned_cols=316 Identities=10% Similarity=0.074 Sum_probs=228.2
Q ss_pred HHHHHHhhhccccchHhHHHHHHHHHHHHHhccch---HHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccc
Q 001349 269 LKHAITSLCMSEILNESEMAVLQIERCWLEASMEL---DIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRD 345 (1094)
Q Consensus 269 l~~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~~---~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~ 345 (1094)
++++|..+.+ +..+.+.+|+..+|++-... .|+ .+..+| ++.-||++|-.+.++.++..|..+|.++.+.+
T Consensus 59 i~~~v~~l~s-~d~~~q~~a~~~~rklls~e-~~ppi~~ii~~G----~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~ 132 (510)
T 3ul1_B 59 VEDIVKGINS-NNLESQLQATQAARKLLSRE-KQPPIDNIIRAG----LIPKFVSFLGKTDCSPIQFESAWALTNIASGT 132 (510)
T ss_dssp HHHHHHHHTS-SCHHHHHHHHHHHHHHHTCS-SCCCHHHHHHTT----HHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHhcCC-CCchHHHHHHCC----CHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC
Confidence 4566777754 44566888999998875332 233 333333 44447777777777899999999999998888
Q ss_pred cchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCC-hHHH---HHhhhhHHHHHHHHhccccccccccCchhh
Q 001349 346 KSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPS-TRTL---IEMDMMESLMTVIKKKEEDFLKMCLKPKSV 417 (1094)
Q Consensus 346 ~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~-~~~~---~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~a 417 (1094)
...++.|+. .|+++.|+.+|+++ ...|+.+|.+|... ++.. ..-+.+++|+.+|........ ...-...
T Consensus 133 ~e~~~~vv~-~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~--~~~~~~~ 209 (510)
T 3ul1_B 133 SEQTKAVVD-GGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL--ACGYLRN 209 (510)
T ss_dssp HHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGS--CHHHHHH
T ss_pred HHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhh--hHHHHHH
Confidence 878887774 56999999999987 67888899999654 3333 334556999999987532210 0011122
Q ss_pred HHHHHHHHhcCCcccccccchhhh-ccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHH
Q 001349 418 SVLLLGQMIGDSEESIVSSIANTI-VSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESF 496 (1094)
Q Consensus 418 a~~~l~~l~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~ 496 (1094)
+...+.++.. +..+...+ ...+++|.|+..+..++.+.+..|+.+|..+.........++.+.+.++.|+++|
T Consensus 210 a~~~L~nl~~------~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL 283 (510)
T 3ul1_B 210 LTWTLSNLCR------NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 283 (510)
T ss_dssp HHHHHHHHHC------CCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHhh------cccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhh
Confidence 3334444422 22222222 2357789999999999999999999999888777777778889999999999999
Q ss_pred HhcCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCcc
Q 001349 497 MAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIY 576 (1094)
Q Consensus 497 ~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~ 576 (1094)
.+.+...+..++..|..+...+ ....+.|-+.|.+.. |+.+|++..++-+--+|..|.+|..-.+.....+.
T Consensus 284 ~~~~~~v~~~al~aL~nl~~~~-----~~~~~~i~~~g~l~~---L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~ 355 (510)
T 3ul1_B 284 GATELPIVTPALRAIGNIVTGT-----DEQTQKVIDAGALAV---FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVV 355 (510)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSC-----HHHHHHHHHTTGGGG---CC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred cCCChhhhhHHHHHHHHhhcCC-----HHHHHHHhhccchHH---HHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 9988888888999999987653 233345556777776 66677777777788899999999764444455566
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHHHhcc
Q 001349 577 REEAIDTLISCLRNSDYPAAQLAAAKTIVSLQ 608 (1094)
Q Consensus 577 reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 608 (1094)
..+.++.|+..|.+++ ..+|..|+.||.|+.
T Consensus 356 ~~g~i~~Lv~lL~~~~-~~v~~~Aa~aL~Nl~ 386 (510)
T 3ul1_B 356 NHGLVPFLVGVLSKAD-FKTQKEAAWAITNYT 386 (510)
T ss_dssp HTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHH
Confidence 6788999999998775 467999999999976
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.3e-08 Score=111.85 Aligned_cols=235 Identities=9% Similarity=0.067 Sum_probs=155.7
Q ss_pred cCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 001349 811 SENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE 888 (1094)
Q Consensus 811 ~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~ 888 (1094)
.+...+.++++.++ +.++...++.|.+||.. +.. .......+...+.+++++++|.++++...++.|..||.. ++
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 88 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI-TEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI 88 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe-EEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc
Confidence 45578999999986 44444457899999988 532 222223456789999999999988887778899999986 33
Q ss_pred eEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEE-EcCCeEEEEECCCCce
Q 001349 889 IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCG-CQDGAIQEIDLATGTF 967 (1094)
Q Consensus 889 ~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sg-s~Dg~I~iwDl~~~~~ 967 (1094)
............+..+. +.++|. ++++ ..++.|..||. ++..
T Consensus 89 ~~~~~~~~~~~~~~~i~-------~~~~g~-----------------------------l~v~~~~~~~i~~~d~-~g~~ 131 (299)
T 2z2n_A 89 IKEYTLPNPDSAPYGIT-------EGPNGD-----------------------------IWFTEMNGNRIGRITD-DGKI 131 (299)
T ss_dssp EEEEECSSTTCCEEEEE-------ECTTSC-----------------------------EEEEETTTTEEEEECT-TCCE
T ss_pred EEEEeCCCcCCCceeeE-------ECCCCC-----------------------------EEEEecCCceEEEECC-CCCE
Confidence 22222111112222222 444443 4443 35678889988 5554
Q ss_pred eEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEE-ec-CCCCEEEEEEeCC-EEEEEE-cCC
Q 001349 968 ATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGS-LP-TLSEVRAMVVSSE-LVYLGC-KGG 1043 (1094)
Q Consensus 968 ~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~-~~-~~~~v~~l~~spd-~l~sgs-~dg 1043 (1094)
... ....+...+..+++++++.+.++...++ .|..||. +++.... .. ....+.+++++++ .++.+. .++
T Consensus 132 ~~~-----~~~~~~~~~~~i~~~~~g~l~v~~~~~~-~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~ 204 (299)
T 2z2n_A 132 REY-----ELPNKGSYPSFITLGSDNALWFTENQNN-AIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGN 204 (299)
T ss_dssp EEE-----ECSSTTCCEEEEEECTTSCEEEEETTTT-EEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTT
T ss_pred EEe-----cCCCCCCCCceEEEcCCCCEEEEeCCCC-EEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCc
Confidence 321 1122345688999999887777665444 8999999 6665442 22 3456889999987 445444 578
Q ss_pred eEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1044 TVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1044 ~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
.|.+||. +++........+...+.+++++++|++.++...++.|..||.
T Consensus 205 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 205 KIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp EEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred eEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 9999999 666443222234567999999999997776667788998874
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.24 E-value=2.9e-11 Score=137.29 Aligned_cols=263 Identities=14% Similarity=0.140 Sum_probs=194.6
Q ss_pred hHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC---------------hHHHHHHHHhcCCChH-HHHHh-
Q 001349 328 PRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG---------------LLEAVVLIDLLRPSTR-TLIEM- 390 (1094)
Q Consensus 328 ~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g---------------~~~Aa~~l~~L~~~~~-~~~~~- 390 (1094)
...+..|+.+|.+++ .+..+++.|.. .|.+++|+.+|+.. ..+|+.+|.+|...+. ++..+
T Consensus 46 ~~~~~~A~~aL~nls-~d~e~R~~i~~-~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~ 123 (354)
T 3nmw_A 46 EHQICPAVCVLMKLS-FDEEHRHAMNE-LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123 (354)
T ss_dssp GGTHHHHHHHHHHHH-TSHHHHHHHHH-TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHc-CCHHHHHHHHH-cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344668899999995 45667777774 56999999999521 4689999999986554 66555
Q ss_pred --hh-hHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhh-hcccHHHHHHHH
Q 001349 391 --DM-MESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSL-EAEWAEERIAAV 466 (1094)
Q Consensus 391 --~~-~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~~ 466 (1094)
+. +|+||.+|++++.+. +..|...|..|-.. .+..++..|++.|+||.|++.| +.++.+.+..|+
T Consensus 124 ~~~GaIp~LV~LL~s~~~~v-------~~~A~~aL~nLs~~----~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~ 192 (354)
T 3nmw_A 124 SMKGCMRALVAQLKSESEDL-------QQVIASVLRNLSWR----ADVNSKKTLREVGSVKALMECALEVKKESTLKSVL 192 (354)
T ss_dssp HCHHHHHHHHHGGGCSCHHH-------HHHHHHHHHHHHTT----CCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HcCCcHHHHHHHHCCCCHHH-------HHHHHHHHHHHhcc----CCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHH
Confidence 34 699999999764332 45566667777221 2356889999999999999975 678888898888
Q ss_pred HHHHHHhhccCcchhhHh-hhcCchhHHHHHHhcCCc----hhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHH
Q 001349 467 GILLRCMQEDGKCRNSIA-DKAELAPVMESFMAASDG----ERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHT 541 (1094)
Q Consensus 467 ~~l~~~~~~~~~~r~~~~-~~~~~~~~~~l~~~~~~~----~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~ 541 (1094)
.+|..+...+...|..+. ..+.+++|+++|++.++. .+..|...|..|...= +...+..+.|.+.|.+..
T Consensus 193 ~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~--a~~~~~~~~i~~~g~i~~--- 267 (354)
T 3nmw_A 193 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI--ATNEDHRQILRENNCLQT--- 267 (354)
T ss_dssp HHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHTTTHHHH---
T ss_pred HHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhc--cCCHHHHHHHHHcCCHHH---
Confidence 888776553445566666 799999999999887654 5677788888775410 012334456777777666
Q ss_pred HHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhccc
Q 001349 542 LLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 609 (1094)
Q Consensus 542 ~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~g 609 (1094)
|+..|++...+-+--++..|.+|..-.+..+.-+.++++++.|++.|++++ ..+|+.|+.||.+|.-
T Consensus 268 Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~-~~i~~~A~~aL~nL~~ 334 (354)
T 3nmw_A 268 LLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH-KMIAMGSAAALRNLMA 334 (354)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSS-HHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHc
Confidence 899999888888888999999997532333445668899999999998764 4679999999999873
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.23 E-value=3.6e-11 Score=136.54 Aligned_cols=203 Identities=14% Similarity=0.072 Sum_probs=153.2
Q ss_pred chHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCC--hHHHHHh---hhhHHHH
Q 001349 327 DPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPS--TRTLIEM---DMMESLM 397 (1094)
Q Consensus 327 ~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~--~~~~~~~---~~~~~Ll 397 (1094)
+..+++.|..+|.+|...+..++..|...+|.++.|+.+|+++ ...|+.+|.+|... ++++..+ +.+|+||
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 4678999999999997666667777766677899999999987 56788899999763 5666555 4559999
Q ss_pred HHHHhccccccccccCchhhHHHHHHHHhcCCcccc-cccchhhhc-cchhHHHHHHhhhcccH----HHHHHHHHHHHH
Q 001349 398 TVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESI-VSSIANTIV-SSKVFESVISSLEAEWA----EERIAAVGILLR 471 (1094)
Q Consensus 398 ~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~-~~~~~~~~~-~~~~~~~l~~~l~~~~~----~~~~~~~~~l~~ 471 (1094)
++|....+.. -+..|...|..| +. +.+++.+|+ ..|+|+.|++.|..++. +-+..|+.+|.+
T Consensus 177 ~lL~~~~~~~------~~~~A~~aL~nL------s~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~n 244 (354)
T 3nmw_A 177 ECALEVKKES------TLKSVLSALWNL------SAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRN 244 (354)
T ss_dssp HHHHHCCCHH------HHHHHHHHHHHH------HTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHH
T ss_pred HHHhcCCCHH------HHHHHHHHHHHH------HccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHH
Confidence 9875532221 134455556666 33 446778888 89999999999997654 467778887766
Q ss_pred Hhh---ccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhh
Q 001349 472 CMQ---EDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQT 548 (1094)
Q Consensus 472 ~~~---~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~ 548 (1094)
+.. .+...|..+.+.+.+++|+++|++++...+..|...|..|... ..+..+.|.+.|.++. |+..|++
T Consensus 245 Ls~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-----~~~~~~~i~~~G~i~~---Lv~LL~s 316 (354)
T 3nmw_A 245 VSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-----NPKDQEALWDMGAVSM---LKNLIHS 316 (354)
T ss_dssp HHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-----CHHHHHHHHHTTHHHH---HHTTTTC
T ss_pred HHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCC-----CHHHHHHHHHCCCHHH---HHHHHhC
Confidence 554 4778899999999999999999999999999999999999654 2344566777888776 5555543
Q ss_pred c
Q 001349 549 A 549 (1094)
Q Consensus 549 ~ 549 (1094)
.
T Consensus 317 ~ 317 (354)
T 3nmw_A 317 K 317 (354)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=3.9e-12 Score=106.79 Aligned_cols=55 Identities=20% Similarity=0.402 Sum_probs=48.7
Q ss_pred CceeccCccc-cccCc----EEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChh
Q 001349 162 KDFVCPITTH-IFDDP----VTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTN 217 (1094)
Q Consensus 162 ~~~~CpIc~~-~~~dP----v~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN 217 (1094)
+++.||||++ ++.+| ++++|||+||+.||.+|+..+...||.||+.+...++. ++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~-~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFR-VQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCE-EE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccce-ee
Confidence 3789999999 99999 57899999999999999887667899999999888775 55
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1e-08 Score=124.09 Aligned_cols=229 Identities=10% Similarity=0.012 Sum_probs=156.9
Q ss_pred EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC--CCceEEEEecccCccce
Q 001349 825 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIG--NEEIHCVQVHDIKDQIQ 902 (1094)
Q Consensus 825 ~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~--~~~~~~~~~~~~~~~V~ 902 (1094)
++++...+++|.+||..++ +.+.++.. ...+..+.|+|||+++++++.|+.|.+||+. +++ ............
T Consensus 169 ~~V~~~~~~~V~viD~~t~--~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~--~v~~i~~G~~P~ 243 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTY--EIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT--TVAEIKIGSEAR 243 (567)
T ss_dssp EEEEETTTTEEEEEETTTC--CEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC--EEEEEECCSEEE
T ss_pred EEEEeCCCCeEEEEECCCC--eEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc--EeEEEecCCCCc
Confidence 6777788999999999998 67777753 4467899999999999999999999999996 543 222222222233
Q ss_pred eeeecCceEEEe----eCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEecccee-e
Q 001349 903 NLAVSNSILCFI----PQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRK-L 977 (1094)
Q Consensus 903 ~v~~~~~~~~fs----pdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~-~ 977 (1094)
.+. |+ |||+++ +++...+++|.++|..+.+.+........ .
T Consensus 244 ~ia-------~s~~~~pDGk~l---------------------------~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~ 289 (567)
T 1qks_A 244 SIE-------TSKMEGWEDKYA---------------------------IAGAYWPPQYVIMDGETLEPKKIQSTRGMTY 289 (567)
T ss_dssp EEE-------ECCSTTCTTTEE---------------------------EEEEEETTEEEEEETTTCCEEEEEECCEECT
T ss_pred eeE-------EccccCCCCCEE---------------------------EEEEccCCeEEEEECCCCcEEEEEecccccc
Confidence 444 88 688874 33445568899999988887754432110 1
Q ss_pred cC---CC-CCeEEEEEeCCccEEEEEECCCCEEEEEECCCCe--EEEEecCCCCEEEEEEeCC--EEEEEE-cCCeEEEE
Q 001349 978 LG---KA-NPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN--MVGSLPTLSEVRAMVVSSE--LVYLGC-KGGTVEIW 1048 (1094)
Q Consensus 978 ~~---h~-~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~--~~~~~~~~~~v~~l~~spd--~l~sgs-~dg~I~vw 1048 (1094)
.+ |. ..+..+.+++++..++....+.+.|.++|..+.. .+..+........+.|+|+ +++++. .++.|.+|
T Consensus 290 ~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~Vi 369 (567)
T 1qks_A 290 DEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVI 369 (567)
T ss_dssp TTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEE
T ss_pred ccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEE
Confidence 11 22 2577888887755555554555699999998753 3344445667788999998 555554 67999999
Q ss_pred ECCCCcEEEEecc----cCCcceEEEEEcCCCCEE-EEEe-CCCcEEEEeC
Q 001349 1049 DQKRQIRIETLQT----GTSGKVQCMALDDNEEFL-VIGT-SDGRIQAWGL 1093 (1094)
Q Consensus 1049 d~~t~~~~~~l~~----~h~~~I~~l~~Spdg~~L-~sgs-~DG~I~iWdl 1093 (1094)
|..+++.+..+.. .|.+.-..+ ++|++..+ +++. .+++|.+||.
T Consensus 370 D~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~ 419 (567)
T 1qks_A 370 DTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGT 419 (567)
T ss_dssp ETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEEC
T ss_pred ECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecC
Confidence 9999998887754 243322222 68875444 4543 4689999985
|
| >3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=9.7e-13 Score=128.30 Aligned_cols=71 Identities=11% Similarity=0.265 Sum_probs=58.6
Q ss_pred CCCCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCC---------CCCCChhHHHHHHHHHHH
Q 001349 158 HTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSS---------TKLPKTNYVLKRLIASWQ 228 (1094)
Q Consensus 158 ~~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~---------~~~~~pN~~l~~~i~~~~ 228 (1094)
..++++|.||||+++|.+||+++|||+||+.||.+|+..+...||.||..+.. ..++ ||..+++.|.+..
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~-~d~~~~~~i~~L~ 104 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAF-PDNAARREVESLP 104 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCE-ECHHHHHHHHTSE
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhc-ccHHHHHHHcccc
Confidence 35667999999999999999999999999999999998766689999986532 2454 8888888887544
Q ss_pred H
Q 001349 229 E 229 (1094)
Q Consensus 229 ~ 229 (1094)
-
T Consensus 105 v 105 (141)
T 3knv_A 105 A 105 (141)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.22 E-value=4.6e-09 Score=116.81 Aligned_cols=251 Identities=7% Similarity=0.028 Sum_probs=148.8
Q ss_pred CCCcEEEEEEeCC--EEEE-------EECCCeEEEEecCCCcceeEEE--ecccCCCeEEEEEecC-CCEEEEEeCCCcE
Q 001349 812 ENGKVLSIACFRD--KIFS-------GHSDGTIKVWTGRGSILHLIQQ--IREHTKAVTGLAILQS-GEMLYSGSLDKTA 879 (1094)
Q Consensus 812 h~~~V~~l~fspd--~LaS-------gs~Dg~I~vWd~~t~~~~~~~~--l~~H~~~V~sv~fspd-g~~LaSgs~DgtI 879 (1094)
.-....+++|+++ ++++ +..++.|.+||..++....+.. ..++...+.+++++++ |+++++.. ++.|
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l 94 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGL 94 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCE
Confidence 3445688999875 5555 4778999999988874322111 0125577999999999 76555544 4479
Q ss_pred EEEECCCCceEEE-Eeccc---CccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCC
Q 001349 880 RVWSIGNEEIHCV-QVHDI---KDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDG 955 (1094)
Q Consensus 880 ~vWdi~~~~~~~~-~~~~~---~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg 955 (1094)
.+||.. ++...+ ..... ...+..+ ++.++|+..+....++.. ... +.. ......+
T Consensus 95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i-------~~d~~g~l~v~~~~~~~~----~~~------~~~---~~~~~~~ 153 (314)
T 1pjx_A 95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDC-------AFDYEGNLWITAPAGEVA----PAD------YTR---SMQEKFG 153 (314)
T ss_dssp EEEETT-SCEEECCSBCTTSCBCBCCCEE-------EECTTSCEEEEECBCBCT----TSC------CCB---TTSSSCE
T ss_pred EEEeCC-CCEEEEEeccCCCccccCCcCE-------EECCCCCEEEEecCcccc----ccc------ccc---cccCCCC
Confidence 999998 654322 11100 0122333 366666532221111000 000 000 0000014
Q ss_pred eEEEEECCCCceeEEeccceeecCCCCCeEEEEEe----CCccEEEEEECCCCEEEEEECC-CCeE-----EEEecCC--
Q 001349 956 AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVH----NGLVYTASTSLDGAAVKMWSTS-NYNM-----VGSLPTL-- 1023 (1094)
Q Consensus 956 ~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs----~~~~~las~s~Dg~~I~iwd~~-~~~~-----~~~~~~~-- 1023 (1094)
.|..||.. ++..... .+......++++ +++..+..+...++.|.+||.. ++.. ...+...
T Consensus 154 ~l~~~~~~-g~~~~~~-------~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~ 225 (314)
T 1pjx_A 154 SIYCFTTD-GQMIQVD-------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE 225 (314)
T ss_dssp EEEEECTT-SCEEEEE-------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS
T ss_pred eEEEECCC-CCEEEec-------cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC
Confidence 56677765 5443211 122346788999 9986554443333489999986 4542 2223222
Q ss_pred CCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEE-EEeCCCcEEEEeC
Q 001349 1024 SEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLV-IGTSDGRIQAWGL 1093 (1094)
Q Consensus 1024 ~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~-sgs~DG~I~iWdl 1093 (1094)
..+..++++++ +.++...++.|.+||..+++.+..+. .+...+.+++|+|+|+.|+ +...++.|..|++
T Consensus 226 ~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~ 297 (314)
T 1pjx_A 226 GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR-CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE-CSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred CCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe-CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence 56889999987 44444578899999998787766663 4556899999999999554 4555688999886
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-09 Score=137.49 Aligned_cols=240 Identities=9% Similarity=0.016 Sum_probs=156.8
Q ss_pred ccccccccCcEEEEeeCCC-----CeEEEeCCcceee-cccCCCcEEEEEEeCC--EEEEEECCCe--------------
Q 001349 777 KYSPLAFEMVKVLSNGHDS-----SADFWNHRELVHV-DSSENGKVLSIACFRD--KIFSGHSDGT-------------- 834 (1094)
Q Consensus 777 ~~~~~~~d~~~l~s~s~dg-----~I~vWd~~~~~~~-~~~h~~~V~~l~fspd--~LaSgs~Dg~-------------- 834 (1094)
....+++||++++.++.++ .|++||..+.... ...+...+..++|+|| .|+.++.++.
T Consensus 128 ~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~ 207 (710)
T 2xdw_A 128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLH 207 (710)
T ss_dssp EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCC
T ss_pred EEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCC
Confidence 3456888999998776543 8999998743221 1112223678999997 7888877766
Q ss_pred --EEEEecCCCcce--eEEEecccCCCeEEEEEecCCCEEEEEeC-----CCcEEEEECCC------Cc--eEEEEeccc
Q 001349 835 --IKVWTGRGSILH--LIQQIREHTKAVTGLAILQSGEMLYSGSL-----DKTARVWSIGN------EE--IHCVQVHDI 897 (1094)
Q Consensus 835 --I~vWd~~t~~~~--~~~~l~~H~~~V~sv~fspdg~~LaSgs~-----DgtI~vWdi~~------~~--~~~~~~~~~ 897 (1094)
|++|++.++... .+.....|...+..+.|+|||++|+.++. +..|++||+.+ +. ...+.. .
T Consensus 208 ~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~--~ 285 (710)
T 2xdw_A 208 QKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID--N 285 (710)
T ss_dssp CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC--S
T ss_pred CEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeC--C
Confidence 999999887432 33333346667889999999999988775 56899999976 42 233222 1
Q ss_pred CccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceee
Q 001349 898 KDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKL 977 (1094)
Q Consensus 898 ~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~ 977 (1094)
...+.. .|+|+|..+++.+..+ ..++.|.+||+.++.... ...+
T Consensus 286 ~~~~~~--------~~s~dg~~l~~~s~~~------------------------~~~~~l~~~d~~~~~~~~----~~~l 329 (710)
T 2xdw_A 286 FEGEYD--------YVTNEGTVFTFKTNRH------------------------SPNYRLINIDFTDPEESK----WKVL 329 (710)
T ss_dssp SSSCEE--------EEEEETTEEEEEECTT------------------------CTTCEEEEEETTSCCGGG----CEEE
T ss_pred CCcEEE--------EEeccCCEEEEEECCC------------------------CCCCEEEEEeCCCCCccc----ceec
Confidence 222221 2677777643322110 123479999998764200 0223
Q ss_pred cCCCC--CeEEEEEeCCccEEEEEECCCC-EEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEE-EEE---cCCeEEE
Q 001349 978 LGKAN--PVHALQVHNGLVYTASTSLDGA-AVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVY-LGC---KGGTVEI 1047 (1094)
Q Consensus 978 ~~h~~--~V~sl~fs~~~~~las~s~Dg~-~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~-sgs---~dg~I~v 1047 (1094)
..|.. .+..+.|++++.++++...++. .|.+||+.+++.+..+. +...+..+.++++ .++ +.+ ..++|+.
T Consensus 330 ~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~ 409 (710)
T 2xdw_A 330 VPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYH 409 (710)
T ss_dssp ECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEE
T ss_pred cCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEE
Confidence 33333 5778899877778888777752 46777887787777776 4566888888886 333 333 3478999
Q ss_pred EECCCCc
Q 001349 1048 WDQKRQI 1054 (1094)
Q Consensus 1048 wd~~t~~ 1054 (1094)
||+.+++
T Consensus 410 ~d~~tg~ 416 (710)
T 2xdw_A 410 CDLTKEE 416 (710)
T ss_dssp EETTSSS
T ss_pred EECCCCc
Confidence 9998876
|
| >3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=6.5e-12 Score=127.51 Aligned_cols=70 Identities=21% Similarity=0.363 Sum_probs=62.6
Q ss_pred CCCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHH
Q 001349 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQE 229 (1094)
Q Consensus 159 ~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~ 229 (1094)
.++++|.||||+++|.+||+++|||+||+.||.+|+..+...||.||..+....+. ||..+.+.|.++.-
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~-~~~~~~~~i~~l~v 83 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLF-PDNFAKREILSLMV 83 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCE-ECHHHHHHHHTSEE
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhh-hhHHHHHHHhhccc
Confidence 56679999999999999999999999999999999987666899999999988887 99999888886543
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.7e-10 Score=133.29 Aligned_cols=258 Identities=15% Similarity=0.148 Sum_probs=192.6
Q ss_pred HHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhc-----------C----hHHHHHHHHhcCCChH-HHHHh---hh-
Q 001349 333 ATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKK-----------G----LLEAVVLIDLLRPSTR-TLIEM---DM- 392 (1094)
Q Consensus 333 ~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~-----------g----~~~Aa~~l~~L~~~~~-~~~~~---~~- 392 (1094)
.|+.+|.++ +.++.++..|.. .|++++|+.+|.. . ..+|+.+|.+|...+. ++..+ +.
T Consensus 167 qAv~aL~nl-s~~~e~R~~i~~-~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~Ga 244 (458)
T 3nmz_A 167 PAVCVLMKL-SFDEEHRHAMNE-LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 244 (458)
T ss_dssp HHHHHHHHH-TTSHHHHHHHHH-TTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHH
T ss_pred HHHHHHHHh-cCCHHHHHHHHH-CCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCc
Confidence 899999999 556778888874 6799999999952 1 5689999999976554 55444 44
Q ss_pred hHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHh-hhcccHHHHHHHHHHHHH
Q 001349 393 MESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISS-LEAEWAEERIAAVGILLR 471 (1094)
Q Consensus 393 ~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~~~~~~~~l~~ 471 (1094)
+|+|+.+|.+++.+. +..|...|..|-.+ .+..++..|++.|+|+.|++. ++.++.+.+..|+.+|..
T Consensus 245 Ip~LV~LL~s~~~~v-------~~~A~~aL~nLs~~----~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~n 313 (458)
T 3nmz_A 245 MRALVAQLKSESEDL-------QQVIASVLRNLSWR----ADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWN 313 (458)
T ss_dssp HHHHHHGGGCSCHHH-------HHHHHHHHHHHTSS----CCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHH-------HHHHHHHHHHHhcC----CCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 699999999765332 45566667666221 235688999999999999997 567888888888888876
Q ss_pred HhhccCcchhhHh-hhcCchhHHHHHHhcCCc----hhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHH
Q 001349 472 CMQEDGKCRNSIA-DKAELAPVMESFMAASDG----ERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYL 546 (1094)
Q Consensus 472 ~~~~~~~~r~~~~-~~~~~~~~~~l~~~~~~~----~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l 546 (1094)
+...+...+..+. ..+.+++|+++|.+..+. .+..|...|..|...= +...+..+.|.+.|.+.. |+..|
T Consensus 314 Ls~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~--a~~~~~~~~i~~~G~i~~---Lv~LL 388 (458)
T 3nmz_A 314 LSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI--ATNEDHRQILRENNCLQT---LLQHL 388 (458)
T ss_dssp HHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHTTHHHH---HHHHS
T ss_pred HccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcc--cCCHHHHHHHHHcccHHH---HHHHH
Confidence 6553445566666 799999999999987664 5677888888775410 012334566777787776 88899
Q ss_pred hhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhccc
Q 001349 547 QTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 609 (1094)
Q Consensus 547 ~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~g 609 (1094)
++...+-+--++..|.+|..-.+..+.-+.++++++.|++.|++++ ..+++.|+.||.||.-
T Consensus 389 ~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~-~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 389 KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH-KMIAMGSAAALRNLMA 450 (458)
T ss_dssp SCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSS-HHHHHHHHHHHHHHHT
T ss_pred cCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHc
Confidence 8888888888999999997532333455668899999999998764 5679999999999874
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.18 E-value=3e-08 Score=113.86 Aligned_cols=287 Identities=11% Similarity=0.078 Sum_probs=176.3
Q ss_pred cCcEEEEeeCCCCeEEEeCCcc--eeecccC---------CCcE-EEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEe
Q 001349 784 EMVKVLSNGHDSSADFWNHREL--VHVDSSE---------NGKV-LSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQI 851 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~~~--~~~~~~h---------~~~V-~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l 851 (1094)
++..++.++.++.|..||..+. ....... ...+ ..+....+.++.++.+|.|..+|..++ +.+...
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG--~~~W~~ 129 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDG--TVAWQT 129 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTC--CEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCC--CEEEEE
Confidence 5667788888899999998632 2222211 2223 445566679999999999999999999 566655
Q ss_pred cccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEE
Q 001349 852 REHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL 931 (1094)
Q Consensus 852 ~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l 931 (1094)
...........+ .+..++.++.++.|..+|..+|+..-.... ..++....... .. ... +..+.++..++.+..
T Consensus 130 ~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~--~~~~~~~~~~~-~~-~~~-~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 130 KVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNL--DMPSLSLRGES-AP-TTA-FGAAVVGGDNGRVSA 202 (376)
T ss_dssp ECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC--CC-----CCCC-CC-EEE-TTEEEECCTTTEEEE
T ss_pred eCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeC--CCCceeecCCC-Cc-EEE-CCEEEEEcCCCEEEE
Confidence 443322222222 245788889999999999999863322222 11111000000 00 001 122333333333333
Q ss_pred EcCCC-----------------------CceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEE
Q 001349 932 LNSSK-----------------------YPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQ 988 (1094)
Q Consensus 932 ~~~~~-----------------------~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~ 988 (1094)
++... ........++.+++++.++.+..+|..+|+...... ......+.
T Consensus 203 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~--------~~~~~~~~ 274 (376)
T 3q7m_A 203 VLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE--------LGSVNDFI 274 (376)
T ss_dssp EETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC--------CCCEEEEE
T ss_pred EECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc--------CCCCCCce
Confidence 33210 001223346789999999999999999998775432 12344555
Q ss_pred EeCCccEEEEEECCCCEEEEEECCCCeEEEEec--CCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcc
Q 001349 989 VHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP--TLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGK 1066 (1094)
Q Consensus 989 fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~--~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~ 1066 (1094)
...+..+ .++.++ .+..+|..+++...... ....+....+..+.+++++.+|.|++||..+++.+..+.......
T Consensus 275 ~~~~~l~--~~~~~g-~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~ 351 (376)
T 3q7m_A 275 VDGNRIY--LVDQND-RVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGF 351 (376)
T ss_dssp EETTEEE--EEETTC-CEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCB
T ss_pred EECCEEE--EEcCCC-eEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcc
Confidence 5544333 334454 89999999999887776 233344555667899999999999999999999888775322222
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1067 VQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1067 I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
...... .+..|+.++.+|.|..|+
T Consensus 352 ~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 352 QTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred eeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 222223 256788899999999987
|
| >2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.8e-11 Score=108.37 Aligned_cols=56 Identities=21% Similarity=0.427 Sum_probs=48.2
Q ss_pred CCCCCCceeccCccccccC----cEEcCCcccccHHhHHHHHHhC--CCCCCCCCcCCCCCC
Q 001349 157 KHTPPKDFVCPITTHIFDD----PVTLETGQTYERRAIQEWIERG--NSSCPITRQKLSSTK 212 (1094)
Q Consensus 157 ~~~~~~~~~CpIc~~~~~d----Pv~~~cGhtfc~~ci~~~~~~~--~~~CP~c~~~~~~~~ 212 (1094)
...+.+++.||||++.|.+ |++++|||+||+.||.+|+... ...||.||+.+....
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 3455668999999999999 9999999999999999999874 357999999876543
|
| >3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.17 E-value=8.5e-12 Score=106.79 Aligned_cols=55 Identities=18% Similarity=0.493 Sum_probs=49.2
Q ss_pred CCceeccCccccccCc-------EEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChh
Q 001349 161 PKDFVCPITTHIFDDP-------VTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTN 217 (1094)
Q Consensus 161 ~~~~~CpIc~~~~~dP-------v~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN 217 (1094)
.+++.||||++.|.+| ++++|||+||+.||.+|+... ..||.||+.+....+. ++
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~-~~ 69 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYH-PI 69 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCCBCCCCSCC-CC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-CCCCCCCCccChhhee-ec
Confidence 3489999999999999 889999999999999999874 5899999999988875 55
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.6e-09 Score=120.58 Aligned_cols=217 Identities=10% Similarity=-0.002 Sum_probs=144.9
Q ss_pred CCCeEEEEecCCCcceeEEEec------ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceee
Q 001349 831 SDGTIKVWTGRGSILHLIQQIR------EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNL 904 (1094)
Q Consensus 831 ~Dg~I~vWd~~t~~~~~~~~l~------~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v 904 (1094)
.+++|.+||..++ +....+. ........+.+. +++..++...+++|.+||..+++.... .........+
T Consensus 15 ~~~~l~~~d~~t~--~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~--i~~~~~p~~i 89 (328)
T 3dsm_A 15 SNATLSYYDPATC--EVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGR--ITGFTSPRYI 89 (328)
T ss_dssp CCBEEEEEETTTT--EEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEE--EECCSSEEEE
T ss_pred CCceEEEEECCCC--EEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEE--cCCCCCCcEE
Confidence 3899999999998 4444331 122446778874 455666666789999999999863221 1112223333
Q ss_pred eecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEE-cCCeEEEEECCCCceeEEeccceeecCCCCC
Q 001349 905 AVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGC-QDGAIQEIDLATGTFATIQTGHRKLLGKANP 983 (1094)
Q Consensus 905 ~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs-~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~ 983 (1094)
+ ++++| +++++. .++.|.+||..+++......... ..++...
T Consensus 90 ~-------~~~~g-----------------------------~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~-~~~~~~~ 132 (328)
T 3dsm_A 90 H-------FLSDE-----------------------------KAYVTQIWDYRIFIINPKTYEITGYIECPD-MDMESGS 132 (328)
T ss_dssp E-------EEETT-----------------------------EEEEEEBSCSEEEEEETTTTEEEEEEECTT-CCTTTCB
T ss_pred E-------EeCCC-----------------------------eEEEEECCCCeEEEEECCCCeEEEEEEcCC-ccccCCC
Confidence 3 55555 355555 78999999999988764322110 0011113
Q ss_pred eEEEEEeCCccEEEEEE-CCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC-EEEEEEc-C----------CeEEEEEC
Q 001349 984 VHALQVHNGLVYTASTS-LDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE-LVYLGCK-G----------GTVEIWDQ 1050 (1094)
Q Consensus 984 V~sl~fs~~~~~las~s-~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd-~l~sgs~-d----------g~I~vwd~ 1050 (1094)
...+++. ++.+.++.. .+ +.|.+||..+++.+..+........+.++++ .++.++. + +.|.+||.
T Consensus 133 p~~i~~~-~~~lyv~~~~~~-~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~ 210 (328)
T 3dsm_A 133 TEQMVQY-GKYVYVNCWSYQ-NRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDA 210 (328)
T ss_dssp CCCEEEE-TTEEEEEECTTC-CEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEET
T ss_pred cceEEEE-CCEEEEEcCCCC-CEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEEC
Confidence 4566673 444444443 35 4999999999999888886666778999997 4444443 3 78999999
Q ss_pred CCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1051 KRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1051 ~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
.+++....+..........++|+||+++|+++.. .|.+||.
T Consensus 211 ~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~ 251 (328)
T 3dsm_A 211 ETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPV 251 (328)
T ss_dssp TTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEET
T ss_pred CCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEEC
Confidence 9999887774322346899999999999988765 8999986
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.17 E-value=3.8e-10 Score=136.40 Aligned_cols=319 Identities=10% Similarity=0.075 Sum_probs=228.4
Q ss_pred HHHHHHhhhccccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccch
Q 001349 269 LKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSV 348 (1094)
Q Consensus 269 l~~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~ 348 (1094)
+..++..+.+. ..+.+..|+..++++-... .++-+.. ....+++.-|+++|..+.++.++..|..+|.++.+.+...
T Consensus 78 l~~lv~~l~s~-d~~~q~~a~~~~rklLs~~-~~~~i~~-ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~ 154 (529)
T 3tpo_A 78 VEDIVKGINSN-NLESQLQATQAARKLLSRE-KQPPIDN-IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 154 (529)
T ss_dssp HHHHHHHHTSS-CHHHHHHHHHHHHHHHTSS-SCCCHHH-HHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHcCC-CCchHHH-HHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 45566666643 4456778888888764322 2222221 1233455557777877778999999999999998887767
Q ss_pred hhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCC-hHHH---HHhhhhHHHHHHHHhccccccccccCchhhHHH
Q 001349 349 IHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPS-TRTL---IEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVL 420 (1094)
Q Consensus 349 ~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~-~~~~---~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~ 420 (1094)
.+.+. ..|+++.|+.+|+++ ...|+.+|.+|... ++.. ...+.+++|+.+|........ ...-...+..
T Consensus 155 ~~~vv-~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~--~~~~~~~a~~ 231 (529)
T 3tpo_A 155 TKAVV-DGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTL--ACGYLRNLTW 231 (529)
T ss_dssp HHHHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGS--CHHHHHHHHH
T ss_pred HHHHH-HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHh--HHHHHHHHHH
Confidence 77776 457999999999987 67888899999654 4433 344556999999986532210 0011123334
Q ss_pred HHHHHhcCCcccccccchh-hhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhc
Q 001349 421 LLGQMIGDSEESIVSSIAN-TIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAA 499 (1094)
Q Consensus 421 ~l~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~ 499 (1094)
.|.++.. +..+.. .....+++|.|+..+..++.+.+..|+.+|..+.........++.+.+.+++|+++|.+.
T Consensus 232 ~L~nl~~------~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~ 305 (529)
T 3tpo_A 232 TLSNLCR------NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT 305 (529)
T ss_dssp HHHHHHC------CCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS
T ss_pred HHHHHHh------cccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC
Confidence 4544422 222222 223357889999999999999999999999988887778888999999999999999998
Q ss_pred CCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHH
Q 001349 500 SDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREE 579 (1094)
Q Consensus 500 ~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~ree 579 (1094)
+...+..++..|..+...+ ......|-+.|.+.. |+.+|++..++-+--++..|.+|..-.+.....+...+
T Consensus 306 ~~~v~~~a~~aL~nl~~~~-----~~~~~~i~~~g~l~~---L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g 377 (529)
T 3tpo_A 306 ELPIVTPALRAIGNIVTGT-----DEQTQKVIDAGALAV---FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG 377 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSC-----HHHHHHHHHTTGGGG---HHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred ChhHHHHHHHHHHHHHccc-----hHHHHHHhhcccHHH---HHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcC
Confidence 8888888999999987652 333445556777776 77778877777788899999998764333444555667
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHhcc
Q 001349 580 AIDTLISCLRNSDYPAAQLAAAKTIVSLQ 608 (1094)
Q Consensus 580 a~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 608 (1094)
+++.|+..|.+++ ..+|..|+.||.|+.
T Consensus 378 ~i~~Lv~lL~~~~-~~v~~~A~~aL~nl~ 405 (529)
T 3tpo_A 378 LVPFLVGVLSKAD-FKTQKAAAWAITNYT 405 (529)
T ss_dssp HHHHHHHHHHSSC-HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCC-HHHHHHHHHHHHHHH
Confidence 8999999998775 467999999999976
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.16 E-value=6e-08 Score=106.57 Aligned_cols=263 Identities=8% Similarity=0.044 Sum_probs=167.8
Q ss_pred ccccCcEEEEeeCCCCeEEEeCCcceee--cccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCC
Q 001349 781 LAFEMVKVLSNGHDSSADFWNHRELVHV--DSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTK 856 (1094)
Q Consensus 781 ~~~d~~~l~s~s~dg~I~vWd~~~~~~~--~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~ 856 (1094)
+..++...++...++.|.+|+....... ...+...+.++++.++ +.++...++.|..||.. +.. ....+.....
T Consensus 27 ~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~-~~~~~~~~~~ 104 (300)
T 2qc5_A 27 SSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF-TEYPLPQPDS 104 (300)
T ss_dssp ECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTC
T ss_pred ECCCCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-EEecCCCCCC
Confidence 3456776666667889999987722221 2233467999999986 55555557899999988 532 2223333456
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCC
Q 001349 857 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSK 936 (1094)
Q Consensus 857 ~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~ 936 (1094)
.+.++++.++|+++++...++.|..||.. ++............+..+. +.++|+
T Consensus 105 ~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~-------~d~~g~------------------ 158 (300)
T 2qc5_A 105 GPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFIT-------LGSDNA------------------ 158 (300)
T ss_dssp CEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEE-------ECTTSS------------------
T ss_pred CCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEE-------ECCCCC------------------
Confidence 78999999999988887778899999987 5433222111112222322 445444
Q ss_pred CceEEEEeCCEEEEEE-cCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCe
Q 001349 937 YPKCLALVQGKVYCGC-QDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN 1015 (1094)
Q Consensus 937 ~v~~l~~s~~~l~sgs-~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~ 1015 (1094)
++++. .++.|..||. +++.... ....+...+..+++++++.+.++.... +.|.+||. ++.
T Consensus 159 -----------l~v~~~~~~~i~~~~~-~g~~~~~-----~~~~~~~~~~~i~~d~~g~l~v~~~~~-~~i~~~~~-~g~ 219 (300)
T 2qc5_A 159 -----------LWFTENQNNSIGRITN-TGKLEEY-----PLPTNAAAPVGITSGNDGALWFVEIMG-NKIGRITT-TGE 219 (300)
T ss_dssp -----------EEEEETTTTEEEEECT-TCCEEEE-----ECSSTTCCEEEEEECTTSSEEEEETTT-TEEEEECT-TCC
T ss_pred -----------EEEEecCCCeEEEECC-CCcEEEe-----eCCCCCCCcceEEECCCCCEEEEccCC-CEEEEEcC-CCc
Confidence 33333 3677888887 5554321 112334568899999888776665444 48999998 554
Q ss_pred EEEE-ec-CCCCEEEEEEeCC-EEEEEE-cCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001349 1016 MVGS-LP-TLSEVRAMVVSSE-LVYLGC-KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1016 ~~~~-~~-~~~~v~~l~~spd-~l~sgs-~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iW 1091 (1094)
.... +. +...+.+++++++ .++.+. .++.|..||. +++............+.+++++++|.+.++.. + .|..+
T Consensus 220 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~ 296 (300)
T 2qc5_A 220 ISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKL 296 (300)
T ss_dssp EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEE
T ss_pred EEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEe
Confidence 4332 22 3567899999987 555555 4689999998 45433221122345689999999998666554 4 66666
Q ss_pred eC
Q 001349 1092 GL 1093 (1094)
Q Consensus 1092 dl 1093 (1094)
|.
T Consensus 297 ~p 298 (300)
T 2qc5_A 297 NL 298 (300)
T ss_dssp EE
T ss_pred CC
Confidence 53
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=99.16 E-value=4e-09 Score=124.75 Aligned_cols=323 Identities=12% Similarity=0.067 Sum_probs=215.6
Q ss_pred HHHHHHhhhccccchHhHHHHHHHHHHHHHhccc-hHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccc
Q 001349 269 LKHAITSLCMSEILNESEMAVLQIERCWLEASME-LDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKS 347 (1094)
Q Consensus 269 l~~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~-~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~ 347 (1094)
+...+.-|. ++....++.|+..++.++....++ ..|..+++.|. |+++|..+.+..+++.++.+|.+|... +.
T Consensus 46 i~~Lv~lL~-s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~----Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~ 119 (457)
T 1xm9_A 46 ICKLVDLLR-SPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIRE----AVSLLRRTGNAEIQKQLTGLLWNLSST-DE 119 (457)
T ss_dssp HHHHHHHTT-SSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHH----HHHHHTTCCCHHHHHHHHHHHHHHHTS-SS
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHH----HHHHHhhCCCHHHHHHHHHHHHHHhcC-HH
Confidence 444444444 344455788888888888764444 44556666666 666666577899999999999999776 66
Q ss_pred hhhhhccCCCcHHHHHHHHh--------cCh------------HHHHHHHHhcCCChHHHHHh----hhhHHHHHHHHhc
Q 001349 348 VIHTLTRVESDVERIVALFK--------KGL------------LEAVVLIDLLRPSTRTLIEM----DMMESLMTVIKKK 403 (1094)
Q Consensus 348 ~~~~i~~~~~~~~~L~~lLk--------~g~------------~~Aa~~l~~L~~~~~~~~~~----~~~~~Ll~~l~~~ 403 (1094)
++..|++ ++++.|+.+|. ++. ..|+.+|.+|...++++..| +.+|+|+.+|..+
T Consensus 120 ~~~~i~~--g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~ 197 (457)
T 1xm9_A 120 LKEELIA--DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNC 197 (457)
T ss_dssp THHHHHH--HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHH
T ss_pred hHHHHHh--ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhh
Confidence 7877886 89999999993 221 17999999998877776665 4559999999975
Q ss_pred cccccccccCchhhHHHHHHHHhc----------------------------CCc-----------------ccccccch
Q 001349 404 EEDFLKMCLKPKSVSVLLLGQMIG----------------------------DSE-----------------ESIVSSIA 438 (1094)
Q Consensus 404 ~~~~~~~~~~~~~aa~~~l~~l~~----------------------------~~~-----------------~~~~~~~~ 438 (1094)
..+.. .-..-...++.+|..|.. .|. ...++...
T Consensus 198 ~~~~~-~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (457)
T 1xm9_A 198 VAASR-CDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGS 276 (457)
T ss_dssp HHHTC-TTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGG
T ss_pred ccccC-CchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHH
Confidence 11000 000012233333443310 010 01233455
Q ss_pred hhhccchhHHHHHHhhhcc-cHHHHHHHHHHHHHHhhccCcc-----hhhHhhhcCchhHHHHHHhcCCchhHHHHHHHH
Q 001349 439 NTIVSSKVFESVISSLEAE-WAEERIAAVGILLRCMQEDGKC-----RNSIADKAELAPVMESFMAASDGERFEIVCFLS 512 (1094)
Q Consensus 439 ~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~l~~~~~~~~~~-----r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 512 (1094)
..++..|+++.|+..|... +.+.++.|+.+|.+++..++.+ |..+.+.+.+++|++||.+++.+.+..|..+|.
T Consensus 277 ~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~ 356 (457)
T 1xm9_A 277 GWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLS 356 (457)
T ss_dssp GGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHH
Confidence 6778899999999999854 5788999999999888776654 445567899999999999999999999999999
Q ss_pred HHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccc---hhHHHH---HHhhhcccCCCCCCccHHHHHHHHHH
Q 001349 513 ELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQC---PVVAGL---LLQLDLLAEPRKMSIYREEAIDTLIS 586 (1094)
Q Consensus 513 el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~---~~~a~~---l~~l~~~~~~~~~~~~reea~~~~~~ 586 (1094)
+|..-++ + ...|.+ |. +..|+..|....++.+ .+++.. |.++-.-.......+...++++.|+.
T Consensus 357 nls~~~~---~---~~~i~~-~~---i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~ 426 (457)
T 1xm9_A 357 NMSRHPL---L---HRVMGN-QV---FPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIIN 426 (457)
T ss_dssp HHHTSGG---G---HHHHHH-HT---HHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHH
T ss_pred HHhcCHH---H---HHHHHH-hh---hHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHH
Confidence 9976432 2 233333 33 4448888876655322 123233 33332212223444556789999999
Q ss_pred HhhcCCChHHHHHHHHHHHhcccc
Q 001349 587 CLRNSDYPAAQLAAAKTIVSLQGR 610 (1094)
Q Consensus 587 ~l~~~~~~~~~~~~~~~~~~l~g~ 610 (1094)
.+.++...+++..|+.+|.++.++
T Consensus 427 L~~~~~~~~i~~~A~~~L~~~~~~ 450 (457)
T 1xm9_A 427 LCRSSASPKAAEAARLLLSDMWSS 450 (457)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred HHcCCCcHHHHHHHHHHHHHHHcc
Confidence 999885667899999998887643
|
| >2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=7.3e-12 Score=107.14 Aligned_cols=51 Identities=16% Similarity=0.196 Sum_probs=45.1
Q ss_pred CCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCC
Q 001349 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTK 212 (1094)
Q Consensus 161 ~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~ 212 (1094)
.+++.||||++.|.+||+++|||+||+.||.+|+.. ...||.||+.+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPEDF 63 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCHHH
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCHhh
Confidence 347899999999999999999999999999999987 457999999876543
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.15 E-value=6.6e-09 Score=114.23 Aligned_cols=232 Identities=11% Similarity=0.011 Sum_probs=157.4
Q ss_pred cCcEEEEeeCCCCeEEEeCC--cceeecccCC-CcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccC-CC
Q 001349 784 EMVKVLSNGHDSSADFWNHR--ELVHVDSSEN-GKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHT-KA 857 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~-~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~-~~ 857 (1094)
+++.+++++.++.|.+||.. +.+..+..+. ..+.++.++|+ +++ +.++.|..||. ++ +.+..+..+. ..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G--~~~W~~~~~~~~~ 78 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DG--RELWNIAAPAGCE 78 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TS--CEEEEEECCTTCE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CC--CEEEEEcCCCCcc
Confidence 46789999999999999985 3444444454 47889999997 555 56888999999 77 6788887653 57
Q ss_pred eEEEEEecCCCEEEEEeC-CCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCC
Q 001349 858 VTGLAILQSGEMLYSGSL-DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSK 936 (1094)
Q Consensus 858 V~sv~fspdg~~LaSgs~-DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~ 936 (1094)
+.++.+.++|+++++.+. ++.|..+|.+...+....... .+..-...+..+.+.++|+.
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~---~~~~~~~~~~~v~~~~~G~~----------------- 138 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFET---GIERPHAQFRQINKNKKGNY----------------- 138 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECC---SCSSGGGSCSCCEECTTSCE-----------------
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccC---CCCcccccccCceECCCCCE-----------------
Confidence 889999999999999887 777877776432222222111 00000001112225555553
Q ss_pred CceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeE
Q 001349 937 YPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNM 1016 (1094)
Q Consensus 937 ~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~ 1016 (1094)
+++.+.++.|..||.. |+.+..+.. . ..+.++.+.+++.+++++..++ .|..+|..+|+.
T Consensus 139 -----------lv~~~~~~~v~~~d~~-G~~~w~~~~------~-~~~~~~~~~~~g~~~v~~~~~~-~v~~~d~~tG~~ 198 (276)
T 3no2_A 139 -----------LVPLFATSEVREIAPN-GQLLNSVKL------S-GTPFSSAFLDNGDCLVACGDAH-CFVQLNLESNRI 198 (276)
T ss_dssp -----------EEEETTTTEEEEECTT-SCEEEEEEC------S-SCCCEEEECTTSCEEEECBTTS-EEEEECTTTCCE
T ss_pred -----------EEEecCCCEEEEECCC-CCEEEEEEC------C-CCccceeEcCCCCEEEEeCCCC-eEEEEeCcCCcE
Confidence 6677788999999988 888755432 1 3455677788888888776654 899999999999
Q ss_pred EEEecCC-------CCEEEEEEeCC-EEEEEEcCC---------eEEEEEC-CCCcEEEEec
Q 001349 1017 VGSLPTL-------SEVRAMVVSSE-LVYLGCKGG---------TVEIWDQ-KRQIRIETLQ 1060 (1094)
Q Consensus 1017 ~~~~~~~-------~~v~~l~~spd-~l~sgs~dg---------~I~vwd~-~t~~~~~~l~ 1060 (1094)
+.++... ..+..+...++ .+++++.+| ..+++.+ .+++.+..+.
T Consensus 199 ~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~ 260 (276)
T 3no2_A 199 VRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLN 260 (276)
T ss_dssp EEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEEC
T ss_pred EEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEec
Confidence 9988621 22677788777 344444322 3456665 5777777774
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-10 Score=136.78 Aligned_cols=220 Identities=14% Similarity=0.058 Sum_probs=165.1
Q ss_pred chHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCC--hHHHHHhh---hhHHHH
Q 001349 327 DPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPS--TRTLIEMD---MMESLM 397 (1094)
Q Consensus 327 ~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~--~~~~~~~~---~~~~Ll 397 (1094)
+..+++.|..+|.+|...+..++..|...+|.++.|+.+|+++ ...|+.+|.+|... +.++..+. .+|+||
T Consensus 213 ~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV 292 (458)
T 3nmz_A 213 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 292 (458)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHH
Confidence 4678999999999997666666666766677899999999987 56788899999873 56665554 459999
Q ss_pred HHHHhccccccccccCchhhHHHHHHHHhcCCcccc-cccchhhhc-cchhHHHHHHhhhcccH----HHHHHHHHHHHH
Q 001349 398 TVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESI-VSSIANTIV-SSKVFESVISSLEAEWA----EERIAAVGILLR 471 (1094)
Q Consensus 398 ~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~-~~~~~~~~~-~~~~~~~l~~~l~~~~~----~~~~~~~~~l~~ 471 (1094)
.+|....+.. -+..|+..|.+| +. +.+++.+|+ ..|+|+.|++.|..+.. +-+..|+.+|..
T Consensus 293 ~lLl~s~~~~------v~~~A~~aL~nL------s~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~n 360 (458)
T 3nmz_A 293 ECALEVKKES------TLKSVLSALWNL------SAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRN 360 (458)
T ss_dssp HHHTTCCSHH------HHHHHHHHHHHH------HHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHH
T ss_pred HHHhcCCCHH------HHHHHHHHHHHH------ccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHH
Confidence 9876533221 134455556666 33 446788888 89999999999997654 357778887766
Q ss_pred Hhh---ccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhh
Q 001349 472 CMQ---EDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQT 548 (1094)
Q Consensus 472 ~~~---~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~ 548 (1094)
+.. .+...|..+.+.+.+++|+++|++++...+..|..+|..|... ..+..+.|.+.|.++. |+..|+.
T Consensus 361 Ls~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-----~~~~~~~i~~~G~I~~---Lv~LL~s 432 (458)
T 3nmz_A 361 VSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-----NPKDQEALWDMGAVSM---LKNLIHS 432 (458)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-----CHHHHHHHHHHTHHHH---HHTTTTC
T ss_pred HHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-----CHHHHHHHHHCCCHHH---HHHHHhC
Confidence 554 5778899999999999999999999999999999999999754 2344566777888776 6666766
Q ss_pred cCCccchhHHHHHHhhhc
Q 001349 549 ANHDQCPVVAGLLLQLDL 566 (1094)
Q Consensus 549 ~~~~~~~~~a~~l~~l~~ 566 (1094)
..++.+-.+|..|..|-.
T Consensus 433 ~~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 433 KHKMIAMGSAAALRNLMA 450 (458)
T ss_dssp SSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHc
Confidence 655656666666666544
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.15 E-value=4.6e-10 Score=135.31 Aligned_cols=304 Identities=13% Similarity=0.136 Sum_probs=222.6
Q ss_pred cccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCc
Q 001349 279 SEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESD 358 (1094)
Q Consensus 279 s~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~ 358 (1094)
++....++.|+..+..++.... ++. .....+.++..+++.|..+.+..+++.+...|.+| +.+..++..|.+. +.
T Consensus 28 ~~~~~v~~~A~~~L~~l~~~~~-~~~--~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~l-s~~~~~~~~i~~~-g~ 102 (529)
T 1jdh_A 28 DEDQVVVNKAAVMVHQLSKKEA-SRH--AIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKS-GG 102 (529)
T ss_dssp CSCHHHHHHHHHHHHHHHTSHH-HHH--HHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-TTSHHHHHHHHHT-TH
T ss_pred CCCHHHHHHHHHHHHHHHcCCc-cHH--HHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHH-HcCchhHHHHHHc-CC
Confidence 3444556788888887775432 211 11234556777888887777889999999999999 4445578888865 79
Q ss_pred HHHHHHHHhcC----hHHHHHHHHhcCCCh-H---HHHHhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCc
Q 001349 359 VERIVALFKKG----LLEAVVLIDLLRPST-R---TLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSE 430 (1094)
Q Consensus 359 ~~~L~~lLk~g----~~~Aa~~l~~L~~~~-~---~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~ 430 (1094)
++.|+.+|+.+ ...|+.+|.+|...+ . .+...+.+|+|+.+|..++.. -...+...|..|..
T Consensus 103 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~-------~~~~~~~~L~~la~--- 172 (529)
T 1jdh_A 103 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK-------FLAITTDCLQILAY--- 172 (529)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHH-------HHHHHHHHHHHHHT---
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHH-------HHHHHHHHHHHHHh---
Confidence 99999999987 567888999994432 2 233456679999999875321 12334444555522
Q ss_pred ccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHH
Q 001349 431 ESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCF 510 (1094)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 510 (1094)
.+.+++..+...|+++.|+..++.++.+.+..++.-++..+..+...|..+.+.+.+++++.++...+...+..++..
T Consensus 173 --~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~ 250 (529)
T 1jdh_A 173 --GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 250 (529)
T ss_dssp --TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHH
T ss_pred --CCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHH
Confidence 346788899999999999999999888877766666666677788889999999999999999988877777788888
Q ss_pred HHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhc
Q 001349 511 LSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRN 590 (1094)
Q Consensus 511 l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~ 590 (1094)
|..|....... ++.-..+..|+.+|+...++-+.-++..|.+|..-.+..+..+...++++.|+..|..
T Consensus 251 L~~l~~~~~~~-----------~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~ 319 (529)
T 1jdh_A 251 LRNLSDAATKQ-----------EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 319 (529)
T ss_dssp HHHHHTTCTTC-----------SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHhcCChhh-----------HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHc
Confidence 88887654321 1223456678888888888888889999999965322234455667899999999987
Q ss_pred C-CChHHHHHHHHHHHhcccc
Q 001349 591 S-DYPAAQLAAAKTIVSLQGR 610 (1094)
Q Consensus 591 ~-~~~~~~~~~~~~~~~l~g~ 610 (1094)
. +...++..|+++|.+|...
T Consensus 320 ~~~~~~v~~~a~~~L~nl~~~ 340 (529)
T 1jdh_A 320 AGDREDITEPAICALRHLTSR 340 (529)
T ss_dssp HTTCHHHHHHHHHHHHHHTSS
T ss_pred cCCHHHHHHHHHHHHHHHHcC
Confidence 4 4578999999999999754
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.1e-10 Score=139.51 Aligned_cols=304 Identities=13% Similarity=0.130 Sum_probs=221.2
Q ss_pred cccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCc
Q 001349 279 SEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESD 358 (1094)
Q Consensus 279 s~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~ 358 (1094)
++....++.|+..+..++.... ++ ......+.++..+++.|..+.+..+++.++..|.+|. .+..++..|.+. +.
T Consensus 25 ~~~~~vr~~A~~~L~~La~~~~-~~--~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls-~~~~~~~~i~~~-g~ 99 (644)
T 2z6h_A 25 DEDQVVVNKAAVMVHQLSKKEA-SR--HAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKS-GG 99 (644)
T ss_dssp CSCHHHHHHHHHHHHHHHTSTT-HH--HHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHT-TSHHHHHHHHTT-TH
T ss_pred CCCHHHHHHHHHHHHHHHCCCh-hH--HHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHh-cChhhHHHHHHc-CC
Confidence 3344556788888888876543 22 2223445677778888887778999999999999984 445578888765 79
Q ss_pred HHHHHHHHhcC----hHHHHHHHHhcCCCh-H---HHHHhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCc
Q 001349 359 VERIVALFKKG----LLEAVVLIDLLRPST-R---TLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSE 430 (1094)
Q Consensus 359 ~~~L~~lLk~g----~~~Aa~~l~~L~~~~-~---~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~ 430 (1094)
++.|+.+|+++ ...|+.+|.+|...+ . .+..-+.+|.|+.+|..+... -+.++...|..|..
T Consensus 100 i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~-------~~~~a~~~L~~La~--- 169 (644)
T 2z6h_A 100 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK-------FLAITTDCLQILAY--- 169 (644)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHH-------HHHHHHHHHHHHHT---
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHH-------HHHHHHHHHHHHHh---
Confidence 99999999987 567888999995432 2 223456679999999876321 13445555665532
Q ss_pred ccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHH
Q 001349 431 ESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCF 510 (1094)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 510 (1094)
.+.+++..++..|+++.|+..++.++.+....++.-++..+..+...|..+.+.+.+++++.++...+...+..++..
T Consensus 170 --~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~ 247 (644)
T 2z6h_A 170 --GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 247 (644)
T ss_dssp --TCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHH
T ss_pred --cCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 256788899999999999999998875554333334445555678889999999999999999988877788888999
Q ss_pred HHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhc
Q 001349 511 LSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRN 590 (1094)
Q Consensus 511 l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~ 590 (1094)
|..|....... ++.-..+..|+..|+...++-+..++..|.+|-.-.+..+..+++.++++.|+..|..
T Consensus 248 L~nL~~~~~~~-----------~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~ 316 (644)
T 2z6h_A 248 LRNLSDAATKQ-----------EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 316 (644)
T ss_dssp HHHHGGGCTTC-----------CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHhhcchhh-----------hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHc
Confidence 99886553221 2223456678888887777777788999988865322234556677899999999987
Q ss_pred CC-ChHHHHHHHHHHHhcccc
Q 001349 591 SD-YPAAQLAAAKTIVSLQGR 610 (1094)
Q Consensus 591 ~~-~~~~~~~~~~~~~~l~g~ 610 (1094)
.. ...++..|+++|.+|.++
T Consensus 317 ~~~~~~v~~~a~~aL~nL~~~ 337 (644)
T 2z6h_A 317 AGDREDITEPAICALRHLTSR 337 (644)
T ss_dssp HTTCHHHHHHHHHHHHHHTSS
T ss_pred cCCcHHHHHHHHHHHHHHhcC
Confidence 54 478999999999999754
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.14 E-value=1.5e-08 Score=115.41 Aligned_cols=258 Identities=11% Similarity=0.158 Sum_probs=166.9
Q ss_pred EEEEEEC-----CCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEe----------CCCcEEEEECCCCce
Q 001349 825 KIFSGHS-----DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGS----------LDKTARVWSIGNEEI 889 (1094)
Q Consensus 825 ~LaSgs~-----Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs----------~DgtI~vWdi~~~~~ 889 (1094)
.++.... ++.|.+.|..++ +.+.++.....+ . ++++|||+++++++ .+++|.+||..+++.
T Consensus 46 ~vyV~~~~~~~~~~~V~ViD~~t~--~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v 121 (386)
T 3sjl_D 46 RVYVNDPAHFAAVTQQFVIDGEAG--RVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLP 121 (386)
T ss_dssp EEEEEECGGGCSSEEEEEEETTTT--EEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE
T ss_pred EEEEEcCcccCCCCEEEEEECCCC--eEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeE
Confidence 5555543 689999999998 777887655555 4 99999999888775 367899999999863
Q ss_pred EE-EEecccCccceeeeecCceEEEeeCCCeEEEEEe--CCeEEEEcCCCC--ceEEE-------E--eCCEEEEEEcCC
Q 001349 890 HC-VQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR--NGKTKLLNSSKY--PKCLA-------L--VQGKVYCGCQDG 955 (1094)
Q Consensus 890 ~~-~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~--~g~i~l~~~~~~--v~~l~-------~--s~~~l~sgs~Dg 955 (1094)
.. +.... ...+ .....+..+.|+|||+++.+.+. ++.+.++|.... +..+. + ....+++.+.||
T Consensus 122 ~~~I~v~~-g~r~-~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG 199 (386)
T 3sjl_D 122 TADIELPD-APRF-LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDG 199 (386)
T ss_dssp EEEEEETT-CCCC-CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTS
T ss_pred EEEEECCC-cccc-ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCC
Confidence 22 22211 0000 00112334559999999988875 578999986432 22221 1 134578899999
Q ss_pred eEEEEECCC-CceeEEeccceeecCCCCCeE-EEEEe-CCccEEEEEECCCCEEEEEECCCCe--EEEEec---------
Q 001349 956 AIQEIDLAT-GTFATIQTGHRKLLGKANPVH-ALQVH-NGLVYTASTSLDGAAVKMWSTSNYN--MVGSLP--------- 1021 (1094)
Q Consensus 956 ~I~iwDl~~-~~~~~~~~~~~~~~~h~~~V~-sl~fs-~~~~~las~s~Dg~~I~iwd~~~~~--~~~~~~--------- 1021 (1094)
.+.+.++.+ ++...... ..+.....++. ...|. +++.++. .+.+ +.|.+.|+.+.. ....+.
T Consensus 200 ~~~~v~~~~~g~v~~~~~--~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~-g~V~v~d~~~~~~~v~~~~~~~~~~~~~~ 275 (386)
T 3sjl_D 200 SLAKVAFGTEGTPEITHT--EVFHPEDEFLINHPAYSQKAGRLVW-PTYT-GKIHQIDLSSGDAKFLPAVEALTEAERAD 275 (386)
T ss_dssp CEEEEECCSSSCCEEEEC--CCCSCTTSCBCSCCEEETTTTEEEE-EBTT-SEEEEEECTTSSCEECCCEESSCHHHHHT
T ss_pred CEEEEECCCCCeEEEeec--ceeccccccccccceeEcCCCcEEE-EeCC-CEEEEEECCCCcceeecceeccccccccc
Confidence 999999986 55532111 11111112222 23554 6775444 3334 499999997654 332221
Q ss_pred --CCCCEEEEEEeCC--EEEEEEc----------CCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCC-EEEEEe-CC
Q 001349 1022 --TLSEVRAMVVSSE--LVYLGCK----------GGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE-FLVIGT-SD 1085 (1094)
Q Consensus 1022 --~~~~v~~l~~spd--~l~sgs~----------dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~-~L~sgs-~D 1085 (1094)
.......++++++ .++.... .+.|.++|..+++.+..+..++ .+++++|++|++ +|++++ .+
T Consensus 276 g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~ly~tn~~~ 353 (386)
T 3sjl_D 276 GWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALSTGD 353 (386)
T ss_dssp TEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEEEEEETTT
T ss_pred cccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEEEEEcCCC
Confidence 1223334677876 5555432 2579999999999999997554 689999999997 676654 48
Q ss_pred CcEEEEeCC
Q 001349 1086 GRIQAWGLS 1094 (1094)
Q Consensus 1086 G~I~iWdls 1094 (1094)
|.|.++|..
T Consensus 354 ~~VsViD~~ 362 (386)
T 3sjl_D 354 KTLYIHDAE 362 (386)
T ss_dssp TEEEEEETT
T ss_pred CeEEEEECC
Confidence 999999963
|
| >2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.3e-11 Score=98.59 Aligned_cols=46 Identities=22% Similarity=0.607 Sum_probs=40.6
Q ss_pred CCCCceeccCccccccCcEEcCCcccccHHhHHHHHHh--CCCCCCCC
Q 001349 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIER--GNSSCPIT 204 (1094)
Q Consensus 159 ~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~--~~~~CP~c 204 (1094)
.+.+++.||||++.+.+|++++|||+||+.||.+|+.. ....||.|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34558999999999999999999999999999999764 45679998
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.13 E-value=5.5e-10 Score=134.91 Aligned_cols=311 Identities=11% Similarity=0.102 Sum_probs=223.4
Q ss_pred HHHHhhhccccchHhHHHHHHHHHHHHHhccc-hHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchh
Q 001349 271 HAITSLCMSEILNESEMAVLQIERCWLEASME-LDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVI 349 (1094)
Q Consensus 271 ~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~-~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~ 349 (1094)
..+.-|..++.-.-+.+|+..+..++....++ ..+...++.|.+ +. |+.+.+..+++.|+.+|.+++..++..+
T Consensus 123 ~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~L----v~-LL~s~~~~v~e~A~~aL~nLa~~~~~~r 197 (529)
T 3tpo_A 123 KFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAF----IS-LLASPHAHISEQAVWALGNIAGAGSAFR 197 (529)
T ss_dssp HHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHH----HH-HTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH----HH-HHcCCCHHHHHHHHHHHHHHhccCHHHH
Confidence 33444444444444667777777777544433 455555555553 33 5667899999999999999977666666
Q ss_pred hhhccCCCcHHHHHHHHhcC---------hHHHHHHHHhcCCCh---HHHHHh-hhhHHHHHHHHhccccccccccCchh
Q 001349 350 HTLTRVESDVERIVALFKKG---------LLEAVVLIDLLRPST---RTLIEM-DMMESLMTVIKKKEEDFLKMCLKPKS 416 (1094)
Q Consensus 350 ~~i~~~~~~~~~L~~lLk~g---------~~~Aa~~l~~L~~~~---~~~~~~-~~~~~Ll~~l~~~~~~~~~~~~~~~~ 416 (1094)
..+. ..|.++.|+.+|+.. ...|+.+|.+|.... .....+ +.+|.|+.+|..+..+- ..
T Consensus 198 ~~i~-~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v-------~~ 269 (529)
T 3tpo_A 198 DLVI-KHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV-------LA 269 (529)
T ss_dssp HHHH-HTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHH-------HH
T ss_pred HHHH-HcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHH-------HH
Confidence 6666 467899999999764 235667788774332 223333 34599999988764331 23
Q ss_pred hHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHH
Q 001349 417 VSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESF 496 (1094)
Q Consensus 417 aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~ 496 (1094)
.|...|..|..+ ..+....++..|+++.|++.+..++...+..|+.+|..+...+...+..+.+.+.+++|+.||
T Consensus 270 ~a~~aL~~l~~~-----~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL 344 (529)
T 3tpo_A 270 DSCWAISYLTDG-----PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 344 (529)
T ss_dssp HHHHHHHHHHSS-----CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHT
T ss_pred HHHHHHHHhhhh-----hhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHH
Confidence 344445555322 235566788999999999999999999999999999888888888899999999999999999
Q ss_pred HhcCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCC-CCc
Q 001349 497 MAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRK-MSI 575 (1094)
Q Consensus 497 ~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~-~~~ 575 (1094)
.+.....|..|...|..+...+. ...+.+.+.|.++. |+.+|++..++-+--+|..|.+|-.-.++.. .-+
T Consensus 345 ~~~~~~i~~~a~~aL~nl~~~~~-----~~~~~v~~~g~i~~---Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l 416 (529)
T 3tpo_A 345 TNPKTNIQKEATWTMSNITAGRQ-----DQIQQVVNHGLVPF---LVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYL 416 (529)
T ss_dssp TCSSHHHHHHHHHHHHHHHTSCH-----HHHHHHHHTTHHHH---HHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhcccH-----HHHHHHHhcCcHHH---HHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 99888888889999999876532 33344556666554 8888898888888889999998876554432 223
Q ss_pred cHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcc
Q 001349 576 YREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQ 608 (1094)
Q Consensus 576 ~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 608 (1094)
...++++.|+..|...+ +.+...+..+|.++-
T Consensus 417 ~~~g~i~~L~~LL~~~d-~~i~~~~L~aL~nil 448 (529)
T 3tpo_A 417 VHCGIIEPLMNLLSAKD-TKIIQVILDAISNIF 448 (529)
T ss_dssp HHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHhcCCC-HHHHHHHHHHHHHHH
Confidence 35678999999998765 566778888887764
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.13 E-value=4.9e-09 Score=116.03 Aligned_cols=231 Identities=11% Similarity=0.089 Sum_probs=150.4
Q ss_pred cccccccCc-EEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEe-cc
Q 001349 778 YSPLAFEMV-KVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQI-RE 853 (1094)
Q Consensus 778 ~~~~~~d~~-~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l-~~ 853 (1094)
...+.+++. .++++..++.|..|+.......+..+...+.+++|+++ ++++...++.|.+||..++....+... .+
T Consensus 32 g~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~ 111 (296)
T 3e5z_A 32 GPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEG 111 (296)
T ss_dssp EEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETT
T ss_pred CCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCC
Confidence 345667787 67788888999999988545666677888999999986 555555678999999988743222111 11
Q ss_pred -cCCCeEEEEEecCCCEEEEEeC-----------------CCcEEEEECCCCceEEEEecccCccceeeeecCceEEEee
Q 001349 854 -HTKAVTGLAILQSGEMLYSGSL-----------------DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP 915 (1094)
Q Consensus 854 -H~~~V~sv~fspdg~~LaSgs~-----------------DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fsp 915 (1094)
....+..++++|+|+++++.+. .+.|..|+.. ++.... .........+ +|+|
T Consensus 112 ~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~--~~~~~~~~gi-------~~s~ 181 (296)
T 3e5z_A 112 KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAP--IRDRVKPNGL-------AFLP 181 (296)
T ss_dssp EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEE--ECCCSSEEEE-------EECT
T ss_pred CCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEe--ecCCCCCccE-------EECC
Confidence 1235678999999998887431 2344444444 332222 1112222333 3777
Q ss_pred CCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECC-CCce-eEEeccceeecCCCCCeEEEEEeCCc
Q 001349 916 QGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA-TGTF-ATIQTGHRKLLGKANPVHALQVHNGL 993 (1094)
Q Consensus 916 dg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~-~~~~-~~~~~~~~~~~~h~~~V~sl~fs~~~ 993 (1094)
+|+. +++.+.++.|.+||+. ++.. ... ..+..+...+..+++++++
T Consensus 182 dg~~----------------------------lv~~~~~~~i~~~~~~~~g~~~~~~----~~~~~~~~~p~~i~~d~~G 229 (296)
T 3e5z_A 182 SGNL----------------------------LVSDTGDNATHRYCLNARGETEYQG----VHFTVEPGKTDGLRVDAGG 229 (296)
T ss_dssp TSCE----------------------------EEEETTTTEEEEEEECSSSCEEEEE----EEECCSSSCCCSEEEBTTS
T ss_pred CCCE----------------------------EEEeCCCCeEEEEEECCCCcCcCCC----eEeeCCCCCCCeEEECCCC
Confidence 7765 4455567788899886 4544 110 1112244566789999999
Q ss_pred cEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEe-CC--EEEEEEcCCeEEEEECCCCcE
Q 001349 994 VYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVS-SE--LVYLGCKGGTVEIWDQKRQIR 1055 (1094)
Q Consensus 994 ~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~s-pd--~l~sgs~dg~I~vwd~~t~~~ 1055 (1094)
.+.++. + +.|.+||.. ++.+..+..+..+.+++|. ++ .+++++.+ .+.-++..+.+.
T Consensus 230 ~l~v~~--~-~~v~~~~~~-g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 230 LIWASA--G-DGVHVLTPD-GDELGRVLTPQTTSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp CEEEEE--T-TEEEEECTT-SCEEEEEECSSCCCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred CEEEEc--C-CeEEEECCC-CCEEEEEECCCCceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 877766 4 489999986 7777777743338899994 66 68888765 455666666543
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.13 E-value=4.5e-10 Score=141.82 Aligned_cols=304 Identities=13% Similarity=0.134 Sum_probs=220.3
Q ss_pred cccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCc
Q 001349 279 SEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESD 358 (1094)
Q Consensus 279 s~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~ 358 (1094)
++....++.|+..+..++....... .....+.++..+++.|..+.+..+++.|+..|.+| +.++.++..|.+. +.
T Consensus 161 ~~d~~vr~~A~~~L~~L~~~~~~~~---~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~L-s~~~~~~~~i~~~-g~ 235 (780)
T 2z6g_A 161 DEDQVVVNKAAVMVHQLSKKEASRH---AIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNL-SHHREGLLAIFKS-GG 235 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHTSHHHHH---HHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HTSHHHHHHHHHT-TH
T ss_pred CCCHHHHHHHHHHHHHHhCCChhHH---HHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHH-hCCchhHHHHHHc-CC
Confidence 3333446778877777776432211 12234567777888887777899999999999997 5555667777765 79
Q ss_pred HHHHHHHHhcC----hHHHHHHHHhcCCCh-HHHH---HhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCc
Q 001349 359 VERIVALFKKG----LLEAVVLIDLLRPST-RTLI---EMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSE 430 (1094)
Q Consensus 359 ~~~L~~lLk~g----~~~Aa~~l~~L~~~~-~~~~---~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~ 430 (1094)
++.|+.+|+.+ ..+|+.+|.+|.... .... .-+.+|.|+.+|...... -...+...|..|..
T Consensus 236 I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~-------v~~~a~~aL~~La~--- 305 (780)
T 2z6g_A 236 IPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK-------FLAITTDCLQILAY--- 305 (780)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHH-------HHHHHHHHHHHHHT---
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHH-------HHHHHHHHHHHHhc---
Confidence 99999999987 678899999995432 2222 345669999999874311 12333334544421
Q ss_pred ccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHH
Q 001349 431 ESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCF 510 (1094)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 510 (1094)
.+.+++..++..|+++.|+..++.++.+.+..++..++..+..+...|..+.+.+.+++|+.++...+...+..|+.+
T Consensus 306 --~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~ 383 (780)
T 2z6g_A 306 --GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 383 (780)
T ss_dssp --TCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHH
T ss_pred --CChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHH
Confidence 356788899999999999999998887776655555555666778889999999999999999988777778888888
Q ss_pred HHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhc
Q 001349 511 LSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRN 590 (1094)
Q Consensus 511 l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~ 590 (1094)
|..|...... .++.-..+..|+..|+...++-+..++..|.+|..-.+..+..+.+.++++.|+..|..
T Consensus 384 L~~L~~~~~~-----------~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~ 452 (780)
T 2z6g_A 384 LRNLSDAATK-----------QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 452 (780)
T ss_dssp HHHHHTTCTT-----------CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHhccchh-----------hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHc
Confidence 8888765432 12223456667888887777777888889988865322334455567899999999987
Q ss_pred CC-ChHHHHHHHHHHHhcccc
Q 001349 591 SD-YPAAQLAAAKTIVSLQGR 610 (1094)
Q Consensus 591 ~~-~~~~~~~~~~~~~~l~g~ 610 (1094)
.. ...++..|+++|.+|...
T Consensus 453 ~~~~~~v~~~Al~aL~nL~~~ 473 (780)
T 2z6g_A 453 AGDREDITEPAICALRHLTSR 473 (780)
T ss_dssp HTTCHHHHHHHHHHHHHTTSS
T ss_pred cCCHHHHHHHHHHHHHHHHhc
Confidence 44 448999999999999754
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.11 E-value=1e-09 Score=137.31 Aligned_cols=238 Identities=8% Similarity=0.013 Sum_probs=149.6
Q ss_pred ccccccccCcEEE-----EeeCCCCeEEEeCCcceeecccCCCcE--EEEEEeCC--EEEEEECCCe-------------
Q 001349 777 KYSPLAFEMVKVL-----SNGHDSSADFWNHRELVHVDSSENGKV--LSIACFRD--KIFSGHSDGT------------- 834 (1094)
Q Consensus 777 ~~~~~~~d~~~l~-----s~s~dg~I~vWd~~~~~~~~~~h~~~V--~~l~fspd--~LaSgs~Dg~------------- 834 (1094)
....+++||++++ .|+.+..|++||..+.......+...+ ..++|+|| .|+.++.|..
T Consensus 124 ~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~ 203 (695)
T 2bkl_A 124 GTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTT 203 (695)
T ss_dssp EEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCE
T ss_pred EEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCE
Confidence 3456788999998 455567899999984332212222222 68999997 8888888776
Q ss_pred EEEEecCCCcce--eEEEecccCCCeEEEEEecCCCEEEEEeCCC----cEEEEECCCCceEEEEecccCccceeeeecC
Q 001349 835 IKVWTGRGSILH--LIQQIREHTKAVTGLAILQSGEMLYSGSLDK----TARVWSIGNEEIHCVQVHDIKDQIQNLAVSN 908 (1094)
Q Consensus 835 I~vWd~~t~~~~--~~~~l~~H~~~V~sv~fspdg~~LaSgs~Dg----tI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~ 908 (1094)
|++|++.++... .+.....|...+.++.|||||++|+.++.++ .|.+|+..+++...+... ...+...
T Consensus 204 v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~--~~~~~~~---- 277 (695)
T 2bkl_A 204 IRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKG--VGAKYEV---- 277 (695)
T ss_dssp EEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEEC--SSCCEEE----
T ss_pred EEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecC--CCceEEE----
Confidence 999999987422 4444455667899999999999998888766 677776655543333322 1122221
Q ss_pred ceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCC--CCCeEE
Q 001349 909 SILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGK--ANPVHA 986 (1094)
Q Consensus 909 ~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h--~~~V~s 986 (1094)
+.++|. +.+.+.. ...++.|.+||+.++..... ..+..+ ...+..
T Consensus 278 ----~~~~g~-l~~~s~~------------------------~~~~~~l~~~d~~~~~~~~~----~~l~~~~~~~~l~~ 324 (695)
T 2bkl_A 278 ----HAWKDR-FYVLTDE------------------------GAPRQRVFEVDPAKPARASW----KEIVPEDSSASLLS 324 (695)
T ss_dssp ----EEETTE-EEEEECT------------------------TCTTCEEEEEBTTBCSGGGC----EEEECCCSSCEEEE
T ss_pred ----EecCCc-EEEEECC------------------------CCCCCEEEEEeCCCCCccCC----eEEecCCCCCeEEE
Confidence 124444 2211100 01357899999987652000 112222 345788
Q ss_pred EEEeCCccEEEEEECCCCEEEEEECC-CCeEEEEec--CCCCEEEEEEeCC--EEE-EEE---cCCeEEEEECCCCcE
Q 001349 987 LQVHNGLVYTASTSLDGAAVKMWSTS-NYNMVGSLP--TLSEVRAMVVSSE--LVY-LGC---KGGTVEIWDQKRQIR 1055 (1094)
Q Consensus 987 l~fs~~~~~las~s~Dg~~I~iwd~~-~~~~~~~~~--~~~~v~~l~~spd--~l~-sgs---~dg~I~vwd~~t~~~ 1055 (1094)
+.++ ++.++++...|+ ..+||.+. ++.....+. ....+..++++++ .++ +.+ ..++|++||+.+++.
T Consensus 325 ~~~~-~~~lv~~~~~dg-~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 325 VSIV-GGHLSLEYLKDA-TSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEE-TTEEEEEEEETT-EEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEE-CCEEEEEEEECC-EEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 8888 566777777776 77777654 455556565 2456777888876 333 332 247899999988763
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.11 E-value=4.9e-10 Score=134.67 Aligned_cols=311 Identities=11% Similarity=0.101 Sum_probs=221.9
Q ss_pred HHHHhhhccccchHhHHHHHHHHHHHHHhccc-hHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchh
Q 001349 271 HAITSLCMSEILNESEMAVLQIERCWLEASME-LDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVI 349 (1094)
Q Consensus 271 ~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~-~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~ 349 (1094)
..|.-|..++.-.-+++|+..+..++....++ ..+...++.|. |+.+ +.+.+..+++.|+.+|.++....+..+
T Consensus 104 ~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~----Lv~l-L~s~~~~v~e~A~~aL~nLa~d~~~~r 178 (510)
T 3ul1_B 104 KFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPA----FISL-LASPHAHISEQAVWALGNIAGDGSAFR 178 (510)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHH----HHHH-TTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHH----HHHH-HcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 34444544444344677887788777544433 45555555555 4433 357889999999999999976666555
Q ss_pred hhhccCCCcHHHHHHHHhcC---------hHHHHHHHHhcCCCh---HHHHHh-hhhHHHHHHHHhccccccccccCchh
Q 001349 350 HTLTRVESDVERIVALFKKG---------LLEAVVLIDLLRPST---RTLIEM-DMMESLMTVIKKKEEDFLKMCLKPKS 416 (1094)
Q Consensus 350 ~~i~~~~~~~~~L~~lLk~g---------~~~Aa~~l~~L~~~~---~~~~~~-~~~~~Ll~~l~~~~~~~~~~~~~~~~ 416 (1094)
..+. ..|.++.|+.+|+.. ...|+..|.++.... ..+..+ +.+|.|+.+|.....+. ..
T Consensus 179 ~~v~-~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v-------~~ 250 (510)
T 3ul1_B 179 DLVI-KHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV-------LA 250 (510)
T ss_dssp HHHH-HTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHH-------HH
T ss_pred HHHH-HcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHH-------HH
Confidence 5555 567999999999764 235666777774322 233333 34499999988764331 33
Q ss_pred hHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHH
Q 001349 417 VSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESF 496 (1094)
Q Consensus 417 aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~ 496 (1094)
.|...|..|.. ...+....++..|+++.|++++..++...+..++.+|.++...+...+..+.+.+.+++|+.||
T Consensus 251 ~A~~aL~~L~~-----~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL 325 (510)
T 3ul1_B 251 DSCWAISYLTD-----GPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 325 (510)
T ss_dssp HHHHHHHHHTS-----SCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CT
T ss_pred HHHHHHHHHhh-----chhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHh
Confidence 44555666632 2235566788999999999999999999999999999998888888899999999999999999
Q ss_pred HhcCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCC-CCc
Q 001349 497 MAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRK-MSI 575 (1094)
Q Consensus 497 ~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~-~~~ 575 (1094)
.+.....|..|...|..+...+. ...+.+.+.|.++. |+..|++..++-+--+|..|.+|-.-.++.. ..+
T Consensus 326 ~~~~~~v~~~A~~aL~nl~a~~~-----~~~~~v~~~g~i~~---Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L 397 (510)
T 3ul1_B 326 TNPKTNIQKEATWTMSNITAGRQ-----DQIQQVVNHGLVPF---LVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYL 397 (510)
T ss_dssp TCSSHHHHHHHHHHHHHHTTSCH-----HHHHHHHHTTHHHH---HHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCcH-----HHHHHHHhcCCHHH---HHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 98888888889999999876532 33445556665554 8888988888888889999988876544432 223
Q ss_pred cHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcc
Q 001349 576 YREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQ 608 (1094)
Q Consensus 576 ~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 608 (1094)
...++++.|+..|+..+ ++++..+..+|.++-
T Consensus 398 ~~~g~i~~L~~LL~~~d-~~i~~~~L~aL~nil 429 (510)
T 3ul1_B 398 VHCGIIEPLMNLLSAKD-TKIIQVILDAISNIF 429 (510)
T ss_dssp HHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHhcCCC-HHHHHHHHHHHHHHH
Confidence 46688999999998765 567888888887753
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.10 E-value=8.9e-09 Score=111.82 Aligned_cols=228 Identities=7% Similarity=-0.024 Sum_probs=145.4
Q ss_pred ccccCcEEE-EeeCCCCeEEEeCCcceee--cccCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEec-ccC
Q 001349 781 LAFEMVKVL-SNGHDSSADFWNHRELVHV--DSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIR-EHT 855 (1094)
Q Consensus 781 ~~~d~~~l~-s~s~dg~I~vWd~~~~~~~--~~~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~-~H~ 855 (1094)
+.+++..++ +...++.|.+|+....... ...+...+.+++++++ .++.++.++.|.+||..++. . ..+. ...
T Consensus 31 ~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~--~-~~~~~~~~ 107 (270)
T 1rwi_B 31 VDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNN--Q-TVLPFDGL 107 (270)
T ss_dssp ECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSC--C-EECCCCSC
T ss_pred ECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCce--E-eeeecCCc
Confidence 445677666 5477889999987632222 1234457889999986 44444448999999988762 2 2232 233
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC
Q 001349 856 KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS 935 (1094)
Q Consensus 856 ~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~ 935 (1094)
..+..++++++|+++++...++.|.+|+..+..... ........+.. ++++++|+.
T Consensus 108 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~-~~~~~~~~p~~-------i~~~~~g~l---------------- 163 (270)
T 1rwi_B 108 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV-LPFTGLNDPDG-------VAVDNSGNV---------------- 163 (270)
T ss_dssp SSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE-CCCCSCCSCCC-------EEECTTCCE----------------
T ss_pred CCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe-eccccCCCcee-------EEEeCCCCE----------------
Confidence 678999999999988887788999999765542111 11111112222 335555542
Q ss_pred CCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCe
Q 001349 936 KYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN 1015 (1094)
Q Consensus 936 ~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~ 1015 (1094)
+++...++.|.+||...+..... ...+...+..+++++++.+.++...++ .|.+||.....
T Consensus 164 ------------~v~~~~~~~i~~~~~~~~~~~~~------~~~~~~~p~~i~~d~~g~l~v~~~~~~-~v~~~~~~~~~ 224 (270)
T 1rwi_B 164 ------------YVTDTDNNRVVKLEAESNNQVVL------PFTDITAPWGIAVDEAGTVYVTEHNTN-QVVKLLAGSTT 224 (270)
T ss_dssp ------------EEEEGGGTEEEEECTTTCCEEEC------CCSSCCSEEEEEECTTCCEEEEETTTS-CEEEECTTCSC
T ss_pred ------------EEEECCCCEEEEEecCCCceEee------cccCCCCceEEEECCCCCEEEEECCCC-cEEEEcCCCCc
Confidence 33334467889999876654321 112235688999999987666665554 89999987654
Q ss_pred EEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCc
Q 001349 1016 MVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI 1054 (1094)
Q Consensus 1016 ~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~ 1054 (1094)
...... +...+.+++++++ .+++...++.|++|+....+
T Consensus 225 ~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 225 STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred ceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 433222 3367899999987 56666788999999987654
|
| >2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=5.9e-11 Score=100.85 Aligned_cols=51 Identities=22% Similarity=0.581 Sum_probs=45.3
Q ss_pred CCCCceeccCccccccCc-------EEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCC
Q 001349 159 TPPKDFVCPITTHIFDDP-------VTLETGQTYERRAIQEWIERGNSSCPITRQKLSS 210 (1094)
Q Consensus 159 ~~~~~~~CpIc~~~~~dP-------v~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~ 210 (1094)
.+++++.||||++.|.+| ++++|||.||+.||.+|+.. ...||.||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 345589999999999998 88999999999999999988 5689999998764
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.6e-07 Score=103.13 Aligned_cols=235 Identities=9% Similarity=0.058 Sum_probs=154.3
Q ss_pred cCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 001349 811 SENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE 888 (1094)
Q Consensus 811 ~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~ 888 (1094)
.....+.++++.++ +.++...++.|.+||.. +.... ..+..+...+.++++.++|.++++...++.|..||.. ++
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence 34567899999986 55555568999999988 53222 2333445679999999999988887778899999988 54
Q ss_pred eEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEE-cCCeEEEEECCCCce
Q 001349 889 IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGC-QDGAIQEIDLATGTF 967 (1094)
Q Consensus 889 ~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs-~Dg~I~iwDl~~~~~ 967 (1094)
............+..+. +.++|+ ++++. .++.|..||.. ++.
T Consensus 94 ~~~~~~~~~~~~~~~i~-------~~~~g~-----------------------------l~v~~~~~~~i~~~~~~-g~~ 136 (300)
T 2qc5_A 94 FTEYPLPQPDSGPYGIT-------EGLNGD-----------------------------IWFTQLNGDRIGKLTAD-GTI 136 (300)
T ss_dssp EEEEECSSTTCCEEEEE-------ECSTTC-----------------------------EEEEETTTTEEEEECTT-SCE
T ss_pred eEEecCCCCCCCCccce-------ECCCCC-----------------------------EEEEccCCCeEEEECCC-CCE
Confidence 33222211112233332 444443 33333 36788888877 554
Q ss_pred eEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEE-ec-CCCCEEEEEEeCC-EEEEEE-cCC
Q 001349 968 ATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGS-LP-TLSEVRAMVVSSE-LVYLGC-KGG 1043 (1094)
Q Consensus 968 ~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~-~~-~~~~v~~l~~spd-~l~sgs-~dg 1043 (1094)
... ........+..+++++++.+.++...+ +.|..||. +++.... .. ....+..++++++ .++.+. .++
T Consensus 137 ~~~-----~~~~~~~~~~~i~~d~~g~l~v~~~~~-~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~ 209 (300)
T 2qc5_A 137 YEY-----DLPNKGSYPAFITLGSDNALWFTENQN-NSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGN 209 (300)
T ss_dssp EEE-----ECSSTTCCEEEEEECTTSSEEEEETTT-TEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTT
T ss_pred EEc-----cCCCCCCCceeEEECCCCCEEEEecCC-CeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCC
Confidence 421 112234568899999988866665444 48999998 5554432 21 3456889999987 455554 467
Q ss_pred eEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1044 TVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1044 ~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
.|.+||. +++........+...+.+++++++|++.++...++.|..|+.
T Consensus 210 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 210 KIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp EEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred EEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 8999998 555443322334567899999999997777666788988874
|
| >1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B | Back alignment and structure |
|---|
Probab=99.09 E-value=5.1e-11 Score=103.05 Aligned_cols=55 Identities=18% Similarity=0.250 Sum_probs=45.9
Q ss_pred CCCceeccCccccc--cCcEEcC--CcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCC
Q 001349 160 PPKDFVCPITTHIF--DDPVTLE--TGQTYERRAIQEWIERGNSSCPITRQKLSSTKLP 214 (1094)
Q Consensus 160 ~~~~~~CpIc~~~~--~dPv~~~--cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~ 214 (1094)
+.+++.||||++.+ .|+++++ |||+||+.|+.+++..+...||.||+.+....+.
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence 34589999999988 4666665 9999999999999876667899999998876654
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.8e-09 Score=123.63 Aligned_cols=184 Identities=11% Similarity=0.027 Sum_probs=130.4
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCC
Q 001349 857 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSK 936 (1094)
Q Consensus 857 ~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~ 936 (1094)
.++.+++++...++++|+.|+ +++|++..... ... ..... | .. .....+.+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~-~~~--~~~~~------------~------------~~-~~~~~lp~ 89 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRD-HIT--SDSTP------------L------------TF-KWEKEIPD 89 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHH-HHH--SSSCC------------C------------CC-SEEEECTT
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhh-hhc--ccccc------------c------------cc-eEEeeCCC
Confidence 689999999999999999985 66799765310 000 00000 0 00 00112333
Q ss_pred CceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeE
Q 001349 937 YPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNM 1016 (1094)
Q Consensus 937 ~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~ 1016 (1094)
|..++|+++.++++ .++.|++||+.+.... .....|..++.++.+.+.. ++.+..|| .|.+||+.++..
T Consensus 90 -V~~l~fd~~~L~v~-~~~~l~v~dv~sl~~~------~~~~~~~~~v~~i~~~~p~--~av~~~dG-~L~v~dl~~~~~ 158 (388)
T 1xip_A 90 -VIFVCFHGDQVLVS-TRNALYSLDLEELSEF------RTVTSFEKPVFQLKNVNNT--LVILNSVN-DLSALDLRTKST 158 (388)
T ss_dssp -EEEEEEETTEEEEE-ESSEEEEEESSSTTCE------EEEEECSSCEEEEEECSSE--EEEEETTS-EEEEEETTTCCE
T ss_pred -eeEEEECCCEEEEE-cCCcEEEEEchhhhcc------CccceeecceeeEEecCCC--EEEEECCC-CEEEEEccCCcc
Confidence 66666644557777 8899999999876643 2334556678888776543 66677786 999999998776
Q ss_pred EEEecCCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcE--EEEec------c--cCCcceEEEEEcCCCCEEEEEe
Q 001349 1017 VGSLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIR--IETLQ------T--GTSGKVQCMALDDNEEFLVIGT 1083 (1094)
Q Consensus 1017 ~~~~~~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~--~~~l~------~--~h~~~I~~l~~Spdg~~L~sgs 1083 (1094)
.. ....|++++|||+.++.|..||++++|+...+.. ..++. . +|...|.++.|.+++.++++-+
T Consensus 159 ~~---~~~~Vs~v~WSpkG~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 159 KQ---LAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EE---EEESEEEEEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred cc---ccCCceEEEEcCCceEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 53 3468999999999999999999999999888775 55661 1 3677899999999999888643
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.08 E-value=9.8e-08 Score=105.85 Aligned_cols=234 Identities=12% Similarity=0.069 Sum_probs=144.9
Q ss_pred CCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 001349 812 ENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE 888 (1094)
Q Consensus 812 h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~ 888 (1094)
+..-.-+..|+++ ++++...++.|..||..++. . ..+ .+...+.+++++++|+++++ . ++.|.+||..+++
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~--~-~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ--V-QRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQS 84 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCC--E-EEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCc--E-EEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCc
Confidence 3445568889983 67777788999999999873 2 223 34578999999999996554 4 5679999999886
Q ss_pred eEEEEecccC---ccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCC
Q 001349 889 IHCVQVHDIK---DQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATG 965 (1094)
Q Consensus 889 ~~~~~~~~~~---~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~ 965 (1094)
...+...... ..+.. +.++|+|+..+......... . ......+.|..+|.. +
T Consensus 85 ~~~~~~~~~~~~~~~~~d-------i~~d~dG~l~~~~~~~~~~~------~-----------~~~~~~~~l~~~d~~-g 139 (297)
T 3g4e_A 85 AVVLATVDNDKKNNRFND-------GKVDPAGRYFAGTMAEETAP------A-----------VLERHQGALYSLFPD-H 139 (297)
T ss_dssp EEEEEECCTTCSSEEEEE-------EEECTTSCEEEEEEECCSBT------T-----------BCCTTCEEEEEECTT-S
T ss_pred EEEEEecCCCCCCCCCCC-------EEECCCCCEEEecCCccccc------c-----------cccCCCcEEEEEECC-C
Confidence 5544332211 12233 34788887433222111000 0 000011233444432 3
Q ss_pred ceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEEC--CCCeEE-----EEec-CCCCEEEEEEeCC-EE
Q 001349 966 TFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWST--SNYNMV-----GSLP-TLSEVRAMVVSSE-LV 1036 (1094)
Q Consensus 966 ~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~--~~~~~~-----~~~~-~~~~v~~l~~spd-~l 1036 (1094)
..... ..+....+.++|++++..+..+....+.|.+||+ .++... ..+. +...+..++++++ .+
T Consensus 140 ~~~~~-------~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~l 212 (297)
T 3g4e_A 140 HVKKY-------FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKL 212 (297)
T ss_dssp CEEEE-------EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCE
T ss_pred CEEEE-------eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCE
Confidence 32211 1112346789999998766544433358999987 455432 2222 2356889999987 44
Q ss_pred EEE-EcCCeEEEEECCCCcEEEEecccCCcceEEEEEc-CCCCEEEEEeC
Q 001349 1037 YLG-CKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD-DNEEFLVIGTS 1084 (1094)
Q Consensus 1037 ~sg-s~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~S-pdg~~L~sgs~ 1084 (1094)
+++ ..++.|.+||..+++.+..+. .+...+++++|. ||++.|+.++.
T Consensus 213 wva~~~~~~v~~~d~~tG~~~~~i~-~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 213 WVACYNGGRVIRLDPVTGKRLQTVK-LPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEETTTEEEEECTTTCCEEEEEE-CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEEEcCCCEEEEEcCCCceEEEEEE-CCCCCceEEEEeCCCCCEEEEEcC
Confidence 444 557889999999999988884 455689999998 88887765543
|
| >2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.3e-11 Score=101.67 Aligned_cols=53 Identities=19% Similarity=0.492 Sum_probs=47.4
Q ss_pred ceeccCccccccCc-------EEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChh
Q 001349 163 DFVCPITTHIFDDP-------VTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTN 217 (1094)
Q Consensus 163 ~~~CpIc~~~~~dP-------v~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN 217 (1094)
++.||||++.+.+| ++++|||+||+.||.+|+.. +..||.||+.+...++. ++
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~-~~ 62 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYH-PI 62 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEE-EC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCcccee-ee
Confidence 78999999999998 88999999999999999998 56899999999887764 44
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.6e-09 Score=129.63 Aligned_cols=278 Identities=16% Similarity=0.166 Sum_probs=194.0
Q ss_pred HhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCC--ChHHHH
Q 001349 315 INGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRP--STRTLI 388 (1094)
Q Consensus 315 ~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~--~~~~~~ 388 (1094)
+..+|.+|. +.++.++..|...|.++...+..++..|.. .|+++.|+.+|+++ ..+|+.+|.+|.. .++|+.
T Consensus 50 i~~LV~~L~-s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~-~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 50 LPEVIAMLG-FRLDAVKSNAAAYLQHLCYRNDKVKTDVRK-LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp HHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHHHcCChHHHHHHHH-cCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 344566664 568899999999999998778888888874 56899999999998 6788899999987 378877
Q ss_pred Hhhh---hHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhh---c------
Q 001349 389 EMDM---MESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLE---A------ 456 (1094)
Q Consensus 389 ~~~~---~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---~------ 456 (1094)
.|.. +|+||.+|+++....+ +..+..+|-.| +.+.+++..|++ ++|+.|+..+- .
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~------~e~aa~aL~nL------S~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~ 194 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDL------TEVITGTLWNL------SSHDSIKMEIVD-HALHALTDEVIIPHSGWEREP 194 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHH------HHHHHHHHHHH------TTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC---
T ss_pred HHHHcCCHHHHHHHHcCCCCHHH------HHHHHHHHHHH------hCCchhhHHHHh-ccHHHHHHHHhcccccccccc
Confidence 7754 4999999998532211 23344445555 456788999995 78999999872 1
Q ss_pred ---------ccHHHHHHHHHHHHHHhhccCcchhhHhhhcC-chhHHHHHHhc------CCchhHHHHHHHHHHHhccc-
Q 001349 457 ---------EWAEERIAAVGILLRCMQEDGKCRNSIADKAE-LAPVMESFMAA------SDGERFEIVCFLSELVKLNR- 519 (1094)
Q Consensus 457 ---------~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~-~~~~~~l~~~~------~~~~~~~~~~~l~el~~~~r- 519 (1094)
.+.+-+.+|+.+|..+...+..+|..|.+... +++||+++++. +.+..++|+..|..|....-
T Consensus 195 ~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~ 274 (584)
T 3l6x_A 195 NEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHR 274 (584)
T ss_dssp -------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHH
T ss_pred cccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccc
Confidence 13577889999888777666678999988655 57999999863 45667789999988875410
Q ss_pred cch-hHHHHH---------HhhhcCcc------hhHHHHHHHHhhc-CCccchhHHHHHHhhhcccCCC-----CCCccH
Q 001349 520 RTF-NEQILH---------IIKDEGTY------SSMHTLLVYLQTA-NHDQCPVVAGLLLQLDLLAEPR-----KMSIYR 577 (1094)
Q Consensus 520 ~~~-~~~~l~---------~i~~~~~~------~~~~~~~~~l~~~-~~~~~~~~a~~l~~l~~~~~~~-----~~~~~r 577 (1094)
... ...++. .+.+.+++ ..+..|+..|+.. .++-+.-+|..|..|-. +... +..+-+
T Consensus 275 e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~a-g~~~~~~~~~~~v~~ 353 (584)
T 3l6x_A 275 EIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCA-GRWTYGRYIRSALRQ 353 (584)
T ss_dssp HSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHS-SCSHHHHHHHHHHTS
T ss_pred cccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHc-CCccccHHHHHHHHH
Confidence 000 000110 01122233 3456678888654 45556678888888854 2211 123345
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHhccc
Q 001349 578 EEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 609 (1094)
Q Consensus 578 eea~~~~~~~l~~~~~~~~~~~~~~~~~~l~g 609 (1094)
++++..|+..|..++ ..+|..|+.+|.||+-
T Consensus 354 ~~glp~Lv~LL~s~~-~~v~~~A~~aL~nLs~ 384 (584)
T 3l6x_A 354 EKALSAIADLLTNEH-ERVVKAASGALRNLAV 384 (584)
T ss_dssp HHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhC
Confidence 899999999998765 4789999999999874
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.1e-09 Score=131.44 Aligned_cols=302 Identities=13% Similarity=0.102 Sum_probs=207.8
Q ss_pred hHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhccccc----------------
Q 001349 283 NESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDK---------------- 346 (1094)
Q Consensus 283 ~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~---------------- 346 (1094)
+..+.|+..+.-++...+....+. ...+++..++++|- +.+..++..+..+|.|+....+
T Consensus 394 ~v~~~AveaLayLS~~~~vk~~lv---~d~g~Ip~LV~LL~-s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~ 469 (810)
T 3now_A 394 DIRRWAADGLAYLTLDAECKEKLI---EDKASIHALMDLAR-GGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAK 469 (810)
T ss_dssp SHHHHHHHHHHHHTTSHHHHHHHH---HCHHHHHHHHHHHH-TTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTC
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHH---HccchHHHHHHHhC-CCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhh
Confidence 445556555555543332211111 23344555666554 5788999999999999986321
Q ss_pred -------------ch---hhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCChHHHHHhh---hhHHHHHHHHhc
Q 001349 347 -------------SV---IHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTLIEMD---MMESLMTVIKKK 403 (1094)
Q Consensus 347 -------------~~---~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~~~~~~~~---~~~~Ll~~l~~~ 403 (1094)
.+ ++.|... |+++.|+.+|+++ ..+|+.+|++|...++++..+- .+|+|+.+|.++
T Consensus 470 ~~v~~~~~ld~~~~v~~r~~~Vvea-GaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~ 548 (810)
T 3now_A 470 QHIPEEHELDDVDFINKRITVLANE-GITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEG 548 (810)
T ss_dssp CSCCCSSCHHHHHHHHHHHHHHHHT-THHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred ccCccccccccHHHHHHHHHHHHHC-cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccC
Confidence 11 2455544 6999999999998 6789999999987777665554 449999999987
Q ss_pred cccccccccCchhhHHHHHHHHhcCCcccccccchhh-hccchhHHHHHHhhhcc-cHHHHHHHHHHHHHHhhccCcchh
Q 001349 404 EEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANT-IVSSKVFESVISSLEAE-WAEERIAAVGILLRCMQEDGKCRN 481 (1094)
Q Consensus 404 ~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~-~~~~~~~~~~~l~~~~~~~~~~r~ 481 (1094)
+... +..|...|..|..+.+ +..... ....|++|.|++.|..+ +...+..|...|.++...+...|.
T Consensus 549 ~~~~-------k~~Aa~AL~nL~~~~~----p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~ 617 (810)
T 3now_A 549 TEKG-------KRHATQALARIGITIN----PEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQ 617 (810)
T ss_dssp CHHH-------HHHHHHHHHHHHHHSC----HHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CHHH-------HHHHHHHHHHHhcCCC----hhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHH
Confidence 5321 3444445665543321 111110 01247999999999866 556666788888877777678899
Q ss_pred hHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHH
Q 001349 482 SIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLL 561 (1094)
Q Consensus 482 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l 561 (1094)
.+.+++.++++++|+.+.+...+..|.+.|..|...+ ..+.++.. +...++.|+.+++....+-+--+|..|
T Consensus 618 ~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~------~~~~~~v~--~~g~l~~Lv~LL~s~d~~vq~~Aa~AL 689 (810)
T 3now_A 618 RIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE------DVIKMFEG--NNDRVKFLALLCEDEDEETATACAGAL 689 (810)
T ss_dssp HHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH------HHHHHHHS--SSSHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh------HHHHHHHh--ccCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999997753 12233332 124677899999887777777888888
Q ss_pred HhhhcccCCCCCCccH-HHHHHHHHHHhhcCCChHHHHHHHHHHHhccc
Q 001349 562 LQLDLLAEPRKMSIYR-EEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 609 (1094)
Q Consensus 562 ~~l~~~~~~~~~~~~r-eea~~~~~~~l~~~~~~~~~~~~~~~~~~l~g 609 (1094)
..|-.-.+.....+.+ +.+++.|+..|.++ ...+|..|+.++.|+..
T Consensus 690 anLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~-d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 690 AIITSVSVKCCEKILAIASWLDILHTLIANP-SPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC-CHHHHHHHHHHHHHHHh
Confidence 8887621112223334 78999999988865 45679999999999864
|
| >3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A | Back alignment and structure |
|---|
Probab=99.06 E-value=5.9e-11 Score=144.99 Aligned_cols=74 Identities=24% Similarity=0.422 Sum_probs=68.2
Q ss_pred CCCCCceeccCccccccCcEEcCCc-ccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHhCCC
Q 001349 158 HTPPKDFVCPITTHIFDDPVTLETG-QTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPG 233 (1094)
Q Consensus 158 ~~~~~~~~CpIc~~~~~dPv~~~cG-htfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~~~~ 233 (1094)
.++|++|.|||.+++|+|||++++| +||+|.+|++|+.. +.+||.+|++++...++ ||+.|++.|+.|+..+..
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~li-PN~~Lk~~I~~w~~~~~~ 960 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVT-PNEELRQKILCFKKQKKE 960 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCE-ECHHHHHHHHHHHHHHHT
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCccccc-ccHHHHHHHHHHHHHHHh
Confidence 5678899999999999999999998 69999999999987 56899999999999997 999999999999987653
|
| >2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-10 Score=101.34 Aligned_cols=56 Identities=23% Similarity=0.532 Sum_probs=47.5
Q ss_pred CCCceeccCccccccCc---EEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChh
Q 001349 160 PPKDFVCPITTHIFDDP---VTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTN 217 (1094)
Q Consensus 160 ~~~~~~CpIc~~~~~dP---v~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN 217 (1094)
..+++.|+||++.|.+| ++++|||.||+.||.+|+.. +..||.||+.+....+. +|
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~-~~ 70 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTA-TN 70 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSC-CC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccC-CC
Confidence 34589999999999877 45699999999999999986 46899999999887775 44
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.03 E-value=4.7e-08 Score=113.35 Aligned_cols=251 Identities=10% Similarity=0.119 Sum_probs=162.9
Q ss_pred CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEe----------CCCcEEEEECCCCceE-EEEecccCccc
Q 001349 833 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGS----------LDKTARVWSIGNEEIH-CVQVHDIKDQI 901 (1094)
Q Consensus 833 g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs----------~DgtI~vWdi~~~~~~-~~~~~~~~~~V 901 (1094)
++|.++|..++ +.+.++.--..+ .++++|||++++++. .+++|.++|..+++.. .+.....+. .
T Consensus 99 ~~VsVID~~t~--~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r-~ 173 (426)
T 3c75_H 99 TQQFVIDGSTG--RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPR-F 173 (426)
T ss_dssp EEEEEEETTTT--EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC-C
T ss_pred CeEEEEECCCC--EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccc-c
Confidence 68999999999 777777655555 899999999888876 4678999999998632 222210000 0
Q ss_pred eeeeecCceEEEeeCCCeEEEEEe--CCeEEEEcCCCC--ceEEEE---------eCCEEEEEEcCCeEEEEECCCCcee
Q 001349 902 QNLAVSNSILCFIPQGAGIKVHLR--NGKTKLLNSSKY--PKCLAL---------VQGKVYCGCQDGAIQEIDLATGTFA 968 (1094)
Q Consensus 902 ~~v~~~~~~~~fspdg~~l~~~~~--~g~i~l~~~~~~--v~~l~~---------s~~~l~sgs~Dg~I~iwDl~~~~~~ 968 (1094)
. ....+..+.|+|||+++.+... ++.+.++|.... +..+.. ....+++.+.||.+.+.+..+++..
T Consensus 174 ~-~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~ 252 (426)
T 3c75_H 174 L-VGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETK 252 (426)
T ss_dssp C-BSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCE
T ss_pred c-cCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEE
Confidence 0 0012334559999999999875 478888886432 222222 1234677889999999999666654
Q ss_pred EEeccceeecCCCCCe-EEEEEeCCccEEEEEECCCCEEEEEECCCCeEE--EEecC-----------CCCEEEEEEeCC
Q 001349 969 TIQTGHRKLLGKANPV-HALQVHNGLVYTASTSLDGAAVKMWSTSNYNMV--GSLPT-----------LSEVRAMVVSSE 1034 (1094)
Q Consensus 969 ~~~~~~~~~~~h~~~V-~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~--~~~~~-----------~~~v~~l~~spd 1034 (1094)
.... ..+.....++ ..+.|.+++..++..+..+ .+.+.|....... ..+.. ......++++++
T Consensus 253 ~~~~--~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g-~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~d 329 (426)
T 3c75_H 253 VTNT--EVFHTEDELLINHPAFSLRSGRLVWPTYTG-KIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQ 329 (426)
T ss_dssp EEEC--CCCSCTTSCBCSCCEECTTTCEEEEEBTTS-EEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGG
T ss_pred EEee--eeeccCCCceeeEeeecCCCCEEEEEeCCC-cEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCC
Confidence 2211 0111111121 1345677666555555554 8999998654322 11110 111123678887
Q ss_pred --EEEEEEc----------CCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCC-EEEEEe-CCCcEEEEeCC
Q 001349 1035 --LVYLGCK----------GGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE-FLVIGT-SDGRIQAWGLS 1094 (1094)
Q Consensus 1035 --~l~sgs~----------dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~-~L~sgs-~DG~I~iWdls 1094 (1094)
.+++... ++.|.++|..+.+.+.++..+. ..++++|+|||+ +++++. .++.|.++|+.
T Consensus 330 g~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~--~P~gia~spDg~~~lyv~n~~s~~VsVID~~ 401 (426)
T 3c75_H 330 SDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH--EIDSINVSQDAEPLLYALSAGTQTLHIYDAA 401 (426)
T ss_dssp GTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred CCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC--CcCeEEEccCCCEEEEEEcCCCCeEEEEECC
Confidence 5555432 3579999999999999996443 589999999999 888888 59999999973
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=2.1e-07 Score=104.70 Aligned_cols=224 Identities=8% Similarity=-0.005 Sum_probs=139.5
Q ss_pred cEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEE
Q 001349 815 KVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHC 891 (1094)
Q Consensus 815 ~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~ 891 (1094)
-..+..|+++ +++++..++.|..||..++. . ..+. +...+.+++|+++|+++++. .+ .|.+||..+++...
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~--~-~~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGR--K-TVHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTL 123 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTE--E-EEEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCc--E-EEEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEE
Confidence 3467789984 67777788999999998873 2 2232 35679999999999877754 44 49999998886544
Q ss_pred EEeccc---CccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCcee
Q 001349 892 VQVHDI---KDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFA 968 (1094)
Q Consensus 892 ~~~~~~---~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~ 968 (1094)
+..... ...+..+ .++|+|+..+....+.. ....+.|..+| +++..
T Consensus 124 ~~~~~~~~~~~~~~~i-------~~d~~G~l~v~~~~~~~----------------------~~~~~~l~~~~--~g~~~ 172 (326)
T 2ghs_A 124 HAELESDLPGNRSNDG-------RMHPSGALWIGTMGRKA----------------------ETGAGSIYHVA--KGKVT 172 (326)
T ss_dssp EECSSTTCTTEEEEEE-------EECTTSCEEEEEEETTC----------------------CTTCEEEEEEE--TTEEE
T ss_pred EeeCCCCCCCCCCCCE-------EECCCCCEEEEeCCCcC----------------------CCCceEEEEEe--CCcEE
Confidence 432211 1123333 37777764322111000 00123455555 34332
Q ss_pred EEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECC--CC-e-----EEEEec-CCCCEEEEEEeCC-EEEE
Q 001349 969 TIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS--NY-N-----MVGSLP-TLSEVRAMVVSSE-LVYL 1038 (1094)
Q Consensus 969 ~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~--~~-~-----~~~~~~-~~~~v~~l~~spd-~l~s 1038 (1094)
... .+......++|++++..+..+...++.|.+||+. ++ . ....+. ....+..++++++ .+++
T Consensus 173 ~~~-------~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwv 245 (326)
T 2ghs_A 173 KLF-------ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWN 245 (326)
T ss_dssp EEE-------EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEE
T ss_pred Eee-------CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEE
Confidence 111 1123467899999987655554434599999986 55 3 222232 2455788999887 4444
Q ss_pred EE-cCCeEEEEECCCCcEEEEecccCCcceEEEEEc-CCCCEEEEEeC
Q 001349 1039 GC-KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD-DNEEFLVIGTS 1084 (1094)
Q Consensus 1039 gs-~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~S-pdg~~L~sgs~ 1084 (1094)
+. .++.|.+||. +++.+..+. .+...+++++|+ +|++.|+.++.
T Consensus 246 a~~~~~~v~~~d~-~g~~~~~i~-~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 246 ARWGEGAVDRYDT-DGNHIARYE-VPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEETTTEEEEECT-TCCEEEEEE-CSCSBEEEEEEESTTSCEEEEEEB
T ss_pred EEeCCCEEEEECC-CCCEEEEEE-CCCCCcEEEEEecCCCCEEEEEec
Confidence 44 5689999998 677777773 455579999998 88887765543
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.00 E-value=2.4e-09 Score=129.31 Aligned_cols=315 Identities=11% Similarity=0.062 Sum_probs=222.8
Q ss_pred HHHHHHHHhhhccccchHhHHHHHHHHHHHHHhc-cc-hHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhccc
Q 001349 267 TELKHAITSLCMSEILNESEMAVLQIERCWLEAS-ME-LDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSR 344 (1094)
Q Consensus 267 ~~l~~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~-~~-~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~ 344 (1094)
..+..++..|.+. ....+..|+..++++..... +. ..+... .++..++++|..+.++.++..|+.+|.++...
T Consensus 74 ~~l~~lv~~L~s~-~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~----g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~ 148 (528)
T 4b8j_A 74 ESLPAMIGGVYSD-DNNLQLEATTQFRKLLSIERSPPIEEVIQS----GVVPRFVQFLTREDFPQLQFEAAWALTNIASG 148 (528)
T ss_dssp -CHHHHHHHHTSS-CHHHHHHHHHHHHHHHTCSSSCCHHHHHHT----TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCCCchHHHHHHC----CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC
Confidence 4466667777544 34556778888877765433 22 223322 33444666666554589999999999999887
Q ss_pred ccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCC-hHHH---HHhhhhHHHHHHHHhccccccccccCchh
Q 001349 345 DKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPS-TRTL---IEMDMMESLMTVIKKKEEDFLKMCLKPKS 416 (1094)
Q Consensus 345 ~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~-~~~~---~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~ 416 (1094)
+...+..+.. .+.++.|+.+|+.+ ...|+.+|.+|... +... ...+.+|+|+.+|...... .-..
T Consensus 149 ~~~~~~~~~~-~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~------~v~~ 221 (528)
T 4b8j_A 149 TSENTKVVID-HGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKL------SMLR 221 (528)
T ss_dssp CHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCH------HHHH
T ss_pred CHHHHHHHHh-CCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCH------HHHH
Confidence 6767776664 47999999999887 56788899999543 3323 3334569999999543221 1145
Q ss_pred hHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHH
Q 001349 417 VSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESF 496 (1094)
Q Consensus 417 aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~ 496 (1094)
.+...|..|.... .+.......|+++.|+..+..++.+.+..|+.+|..+..........+.+.+.++.|+.+|
T Consensus 222 ~a~~~L~~L~~~~------~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL 295 (528)
T 4b8j_A 222 NATWTLSNFCRGK------PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 295 (528)
T ss_dssp HHHHHHHHHHCSS------SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHHHHHHHHcCC------CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHH
Confidence 5666677775433 2223334589999999999999999999999999888776666677888899999999999
Q ss_pred HhcCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhc-CCccchhHHHHHHhhhcccCCCCCCc
Q 001349 497 MAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTA-NHDQCPVVAGLLLQLDLLAEPRKMSI 575 (1094)
Q Consensus 497 ~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~-~~~~~~~~a~~l~~l~~~~~~~~~~~ 575 (1094)
...+...+..|+..|..+...+ ....+.+-+.|.++. |+.+|+.. .+.-+.-++..|.+|..-.+.....+
T Consensus 296 ~~~~~~v~~~a~~~L~nl~~~~-----~~~~~~~~~~~~l~~---L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~ 367 (528)
T 4b8j_A 296 LHPSPSVLIPALRTVGNIVTGD-----DAQTQCIIDHQALPC---LLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAV 367 (528)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSC-----HHHHHHHHTTTHHHH---HHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred cCCChhHHHHHHHHHHHHHcCC-----HHHHHHHHHhhhHHH---HHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9988888889999999997653 223334445555554 77888776 66777788888988875222222344
Q ss_pred cHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcc
Q 001349 576 YREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQ 608 (1094)
Q Consensus 576 ~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 608 (1094)
+..+.++.|+..|.++ ...+|..|+.+|.+++
T Consensus 368 ~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~ 399 (528)
T 4b8j_A 368 INAGIIGPLVNLLQTA-EFDIKKEAAWAISNAT 399 (528)
T ss_dssp HHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Confidence 5567889999999877 4578999999999976
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.8e-07 Score=107.25 Aligned_cols=235 Identities=12% Similarity=0.072 Sum_probs=151.0
Q ss_pred CcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCC--cEEEEECCCCce
Q 001349 814 GKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDK--TARVWSIGNEEI 889 (1094)
Q Consensus 814 ~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~Dg--tI~vWdi~~~~~ 889 (1094)
.....++|+++ ++++...++.|++||..++ ........ ..... ++|+++++.|+++..++ .|.+|+..++..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g--~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDN--KVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTT--EEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCC--EEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence 46889999986 5556666799999999987 33333332 33334 99999999999998876 788888776532
Q ss_pred -EEEEec-c-cCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCc
Q 001349 890 -HCVQVH-D-IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGT 966 (1094)
Q Consensus 890 -~~~~~~-~-~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~ 966 (1094)
...... . ....+.+++ ++|++ +.|+++..++.|+.||..++.
T Consensus 207 ~~~~g~~~~~~~~~p~~ia-------v~p~~----------------------------g~lyv~d~~~~I~~~d~~~~~ 251 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVA-------LDETE----------------------------EWLYFVDSNKNFGRFNVKTQE 251 (409)
T ss_dssp EEEEEECCTTSCSCCCBCE-------ECTTS----------------------------SEEEEECTTCEEEEEETTTCC
T ss_pred eEEeeeccchhcCCcEEEE-------EeCCC----------------------------CeEEEEECCCcEEEEECCCCC
Confidence 111000 1 112222232 55522 245566677889999998776
Q ss_pred eeEEeccceeecCCCCC--eEEEEEeCC-ccEEEEEECCCCEEEEEECCCCeEEEEec-C---------------CCCEE
Q 001349 967 FATIQTGHRKLLGKANP--VHALQVHNG-LVYTASTSLDGAAVKMWSTSNYNMVGSLP-T---------------LSEVR 1027 (1094)
Q Consensus 967 ~~~~~~~~~~~~~h~~~--V~sl~fs~~-~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~---------------~~~v~ 1027 (1094)
...... . ...++... ...++|+|+ +.+.++-..+ +.|+.||.... +..+. + -....
T Consensus 252 ~~~~~~-~-~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~-~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~ 326 (409)
T 3hrp_A 252 VTLIKQ-L-ELSGSLGTNPGPYLIYYFVDSNFYMSDQNL-SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPN 326 (409)
T ss_dssp EEEEEE-C-CCCSCCCCSSCCEEEEETTTTEEEEEETTT-TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEE
T ss_pred EEEEec-c-cccCCCCCCccccEEEeCCCCEEEEEeCCC-CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCe
Confidence 432200 0 01122222 238999994 6555555444 59999997643 22222 1 13488
Q ss_pred EEEEeCC--EEEEEE-cCCeEEEEECCCCcEEEEecccC---------------CcceEEEEEcCCCCEEEEEeCCCcEE
Q 001349 1028 AMVVSSE--LVYLGC-KGGTVEIWDQKRQIRIETLQTGT---------------SGKVQCMALDDNEEFLVIGTSDGRIQ 1089 (1094)
Q Consensus 1028 ~l~~spd--~l~sgs-~dg~I~vwd~~t~~~~~~l~~~h---------------~~~I~~l~~Spdg~~L~sgs~DG~I~ 1089 (1094)
.++++++ ++++-+ .++.|+.||..++... ++ .++ -.....++++++|.++++-..+++|+
T Consensus 327 gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~-~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir 404 (409)
T 3hrp_A 327 GMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-TV-AGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIR 404 (409)
T ss_dssp EEEECTTCCEEEEETTTTCEEEEEETTTTEEE-EE-EECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEE
T ss_pred EEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-EE-eCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEE
Confidence 9999998 444455 6889999998887643 33 233 23689999999998888888889999
Q ss_pred EEeCC
Q 001349 1090 AWGLS 1094 (1094)
Q Consensus 1090 iWdls 1094 (1094)
.+++.
T Consensus 405 ~i~~e 409 (409)
T 3hrp_A 405 KYAVE 409 (409)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 88763
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.99 E-value=4.4e-08 Score=113.60 Aligned_cols=268 Identities=12% Similarity=0.079 Sum_probs=168.1
Q ss_pred ccCcEEEEeeC-C----CCeEEEeCCc--ceeecccCCCcEEEEEEeCC--EEEEEE----------CCCeEEEEecCCC
Q 001349 783 FEMVKVLSNGH-D----SSADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGH----------SDGTIKVWTGRGS 843 (1094)
Q Consensus 783 ~d~~~l~s~s~-d----g~I~vWd~~~--~~~~~~~h~~~V~~l~fspd--~LaSgs----------~Dg~I~vWd~~t~ 843 (1094)
+++.+++.... + +.|.++|..+ .+..+.....+ .++++|| +++.+. .++.|.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 45665444433 2 6899999873 23333322334 8999997 454443 4789999999998
Q ss_pred cceeEEEeccc-------CCCeEEEEEecCCCEEEEEeC--CCcEEEEECCCCceEEEEecccCccceeeee--cCceEE
Q 001349 844 ILHLIQQIREH-------TKAVTGLAILQSGEMLYSGSL--DKTARVWSIGNEEIHCVQVHDIKDQIQNLAV--SNSILC 912 (1094)
Q Consensus 844 ~~~~~~~l~~H-------~~~V~sv~fspdg~~LaSgs~--DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~--~~~~~~ 912 (1094)
+.+.++.-. ......+.|+|||++++++.. +++|.+.|+.+++.. ........+ .+.. ....+.
T Consensus 160 --~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv--~~I~v~g~~-~~~p~g~~~~v~ 234 (426)
T 3c75_H 160 --LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFD--RMLDVPDCY-HIFPASPTVFYM 234 (426)
T ss_dssp --CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEE--EEEECCSEE-EEEEEETTEEEE
T ss_pred --cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEE--EEEEcCCce-eeccCCCcEEEE
Confidence 566665321 233467899999999999874 578999999998632 222211110 0100 011244
Q ss_pred EeeCCCeEEEEEeCCeEE-----EEcCCCCc--eEEEEe--CCEEEEEEcCCeEEEEECCCCceeEEeccceeec-----
Q 001349 913 FIPQGAGIKVHLRNGKTK-----LLNSSKYP--KCLALV--QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLL----- 978 (1094)
Q Consensus 913 fspdg~~l~~~~~~g~i~-----l~~~~~~v--~~l~~s--~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~----- 978 (1094)
++++|+.+.+...++.+. +++..... ..+.+. ++.++..+..+.|.+.|...+....... ..+.
T Consensus 235 ~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~--~~~~~~~~i 312 (426)
T 3c75_H 235 NCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAP--IEALTEAER 312 (426)
T ss_dssp EETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCC--EESSCTTTG
T ss_pred EcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeee--eeecccccc
Confidence 777887776666555443 22222211 112233 3566667788999999987655331110 0000
Q ss_pred --C-CCCCeEEEEEeCCccEEEEEECC---------CCEEEEEECCCCeEEEEecCCCCEEEEEEeCC---EEEEEE-cC
Q 001349 979 --G-KANPVHALQVHNGLVYTASTSLD---------GAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE---LVYLGC-KG 1042 (1094)
Q Consensus 979 --~-h~~~V~sl~fs~~~~~las~s~D---------g~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd---~l~sgs-~d 1042 (1094)
+ .......+.+++++..+.....+ ++.|.++|..+++.+.++.-+....++.|+|| .+++.. .+
T Consensus 313 ~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s 392 (426)
T 3c75_H 313 ADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGT 392 (426)
T ss_dssp GGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTT
T ss_pred ccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCC
Confidence 0 00112236788886654443211 13799999999999999986667899999987 677777 58
Q ss_pred CeEEEEECCCCcEEEEe
Q 001349 1043 GTVEIWDQKRQIRIETL 1059 (1094)
Q Consensus 1043 g~I~vwd~~t~~~~~~l 1059 (1094)
+.|.|+|..+++.+.++
T Consensus 393 ~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 393 QTLHIYDAATGEELRSV 409 (426)
T ss_dssp TEEEEEETTTCCEEEEE
T ss_pred CeEEEEECCCCCEEEEe
Confidence 99999999999999987
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=3.9e-08 Score=122.79 Aligned_cols=241 Identities=13% Similarity=0.125 Sum_probs=147.6
Q ss_pred cCCCcEEEEEEeCC--EEE-EEE----CCCeEEEEecCCCcceeEE-EecccCCCeEEEEEecCCCEEEEEeCCCc----
Q 001349 811 SENGKVLSIACFRD--KIF-SGH----SDGTIKVWTGRGSILHLIQ-QIREHTKAVTGLAILQSGEMLYSGSLDKT---- 878 (1094)
Q Consensus 811 ~h~~~V~~l~fspd--~La-Sgs----~Dg~I~vWd~~t~~~~~~~-~l~~H~~~V~sv~fspdg~~LaSgs~Dgt---- 878 (1094)
+|...+..++|||| +|+ +.+ .+.+|++||+.+++ .+. .+.+. ....++|+ ||+.|+.++.|..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~--~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ--PLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS--EEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC---
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC--CCccccCCc--eeccEEEe-CCCEEEEEEecCccccc
Confidence 46678999999997 555 333 33579999999994 332 22211 13568899 9999999988754
Q ss_pred ---------EEEEECCCCce--EEEEecc--cCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC
Q 001349 879 ---------ARVWSIGNEEI--HCVQVHD--IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ 945 (1094)
Q Consensus 879 ---------I~vWdi~~~~~--~~~~~~~--~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~ 945 (1094)
|++|++.++.. ..+.... +...+.++. |+|||+.+++....+
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~-------~SpDg~~l~~~~~~~------------------ 255 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGAT-------VTEDDRFLLISAANS------------------ 255 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEE-------ECTTSCEEEEEEESS------------------
T ss_pred ccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEE-------EcCCCCEEEEEEccC------------------
Confidence 99999988652 2222221 122334444 899999765433221
Q ss_pred CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC--CEEEEEECCCCeE---EEEe
Q 001349 946 GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG--AAVKMWSTSNYNM---VGSL 1020 (1094)
Q Consensus 946 ~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg--~~I~iwd~~~~~~---~~~~ 1020 (1094)
+.++.|.+||+.++.... ..+..+.........++++.+++.+..++ ..|..||+.++.. ..-.
T Consensus 256 ------~~~~~i~~~d~~~~~~~~-----~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~ 324 (693)
T 3iuj_A 256 ------TSGNRLYVKDLSQENAPL-----LTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI 324 (693)
T ss_dssp ------SSCCEEEEEETTSTTCCC-----EEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE
T ss_pred ------CCCcEEEEEECCCCCCce-----EEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe
Confidence 123588999988763110 23334444555543344444545544432 4899999987654 2223
Q ss_pred cCCCCEEEEEEeCCEEEEEE-cCC--eEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCC----CcEEEEeC
Q 001349 1021 PTLSEVRAMVVSSELVYLGC-KGG--TVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSD----GRIQAWGL 1093 (1094)
Q Consensus 1021 ~~~~~v~~l~~spd~l~sgs-~dg--~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~D----G~I~iWdl 1093 (1094)
.+...+..+....+.++... .++ .|++||+..+ ....+...+.+.+..+.++++++.++....+ ++|+.||+
T Consensus 325 ~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~ 403 (693)
T 3iuj_A 325 PERQQVLTVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP 403 (693)
T ss_dssp CCCSSCEEEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred cCCCCEEEEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence 34433335555555655554 454 6899998854 4455543455678888889998876655444 78888886
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.98 E-value=3.2e-08 Score=124.61 Aligned_cols=237 Identities=11% Similarity=0.025 Sum_probs=147.1
Q ss_pred ccccccccCcEEEEeeCC-----CCeEEEeCCcceee-cccCCCcEEEEEEeCC-EEEEEECCCe--------------E
Q 001349 777 KYSPLAFEMVKVLSNGHD-----SSADFWNHRELVHV-DSSENGKVLSIACFRD-KIFSGHSDGT--------------I 835 (1094)
Q Consensus 777 ~~~~~~~d~~~l~s~s~d-----g~I~vWd~~~~~~~-~~~h~~~V~~l~fspd-~LaSgs~Dg~--------------I 835 (1094)
....+++||++++.++.+ ..|++||..+.... ...+...+..++|+|| .|+.++.|+. |
T Consensus 166 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v 245 (741)
T 1yr2_A 166 DAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTV 245 (741)
T ss_dssp EEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTTSEEEEEECCCC--------CCCCCEE
T ss_pred EeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECCCEEEEEEecCcccccccccCCCCCEE
Confidence 345678899999887654 45999998743221 1112222357899997 7777766554 8
Q ss_pred EEEecCCCcce--eEEEecccCCCeEEEEEecCCCEEEEEeCCC-----cEEEEECCCC--c-eEEEEecccCccceeee
Q 001349 836 KVWTGRGSILH--LIQQIREHTKAVTGLAILQSGEMLYSGSLDK-----TARVWSIGNE--E-IHCVQVHDIKDQIQNLA 905 (1094)
Q Consensus 836 ~vWd~~t~~~~--~~~~l~~H~~~V~sv~fspdg~~LaSgs~Dg-----tI~vWdi~~~--~-~~~~~~~~~~~~V~~v~ 905 (1094)
++|++.++... .+.....|...+..+.|||||++|+..+.++ .|++||+.++ + ...+.. ....+...
T Consensus 246 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~--~~~~~~~~- 322 (741)
T 1yr2_A 246 WLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP--DLKAQWDF- 322 (741)
T ss_dssp EEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC--SSSSCEEE-
T ss_pred EEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC--CCCceEEE-
Confidence 99999877422 3333334445689999999999998887654 7999999876 3 333322 12222211
Q ss_pred ecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCc-eeEEeccceeecCCCCCe
Q 001349 906 VSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGT-FATIQTGHRKLLGKANPV 984 (1094)
Q Consensus 906 ~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~-~~~~~~~~~~~~~h~~~V 984 (1094)
++|+|+.+++.+..+ ..++.|.+||+.++. ... ..+..+...+
T Consensus 323 -------~~~dg~~l~~~s~~~------------------------~~~~~l~~~d~~~~~~~~~-----~l~~~~~~~l 366 (741)
T 1yr2_A 323 -------VDGVGDQLWFVSGDG------------------------APLKKIVRVDLSGSTPRFD-----TVVPESKDNL 366 (741)
T ss_dssp -------EEEETTEEEEEECTT------------------------CTTCEEEEEECSSSSCEEE-----EEECCCSSEE
T ss_pred -------EeccCCEEEEEECCC------------------------CCCCEEEEEeCCCCccccE-----EEecCCCCeE
Confidence 346666543322111 124568999988752 221 1222334456
Q ss_pred EEEEEeCCccEEEEEECCCCEEEEEECC-CCeEEEEec--CCCCEEEEEEeCC---EEEEEE---cCCeEEEEECCCCc
Q 001349 985 HALQVHNGLVYTASTSLDGAAVKMWSTS-NYNMVGSLP--TLSEVRAMVVSSE---LVYLGC---KGGTVEIWDQKRQI 1054 (1094)
Q Consensus 985 ~sl~fs~~~~~las~s~Dg~~I~iwd~~-~~~~~~~~~--~~~~v~~l~~spd---~l~sgs---~dg~I~vwd~~t~~ 1054 (1094)
..+.++ ++.++++...|+ ..+||.+. ++.....+. +...+..+.++++ .+++.+ ..++|++||+.+++
T Consensus 367 ~~~~~~-~~~lv~~~~~dg-~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 367 ESVGIA-GNRLFASYIHDA-KSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEE-BTEEEEEEEETT-EEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEE-CCEEEEEEEECC-EEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 677887 455666766675 66666544 455666665 3567888999887 333333 34789999998876
|
| >1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-10 Score=94.45 Aligned_cols=46 Identities=15% Similarity=0.153 Sum_probs=40.5
Q ss_pred CceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCC
Q 001349 162 KDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSST 211 (1094)
Q Consensus 162 ~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~ 211 (1094)
+++.||||++.|.+|++++|||+||+.||..| ...||.||+.+...
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLG 50 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCC
T ss_pred cCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeecC
Confidence 47999999999999999999999999999872 45799999987643
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=8.8e-08 Score=118.89 Aligned_cols=274 Identities=10% Similarity=0.034 Sum_probs=166.3
Q ss_pred ccccCcEEEEeeCCCCeEEEeCCcc--eeecccC-C----CcEE-EEEEeCCEEEEEEC------CCeEEEEecCCCcce
Q 001349 781 LAFEMVKVLSNGHDSSADFWNHREL--VHVDSSE-N----GKVL-SIACFRDKIFSGHS------DGTIKVWTGRGSILH 846 (1094)
Q Consensus 781 ~~~d~~~l~s~s~dg~I~vWd~~~~--~~~~~~h-~----~~V~-~l~fspd~LaSgs~------Dg~I~vWd~~t~~~~ 846 (1094)
...++.+++.++.|+.+..+|..+. +.....+ . ..+. ......+.++.++. +|.|+.||..++ +
T Consensus 124 ~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG--~ 201 (677)
T 1kb0_A 124 VALWKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETG--E 201 (677)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTC--C
T ss_pred ceEECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCC--c
Confidence 3446778889999999999998632 2222222 1 1111 12233466666654 799999999999 6
Q ss_pred eEEEecccCC--------------------------------CeEEEEEecCCCEEEEEeCCC-----------------
Q 001349 847 LIQQIREHTK--------------------------------AVTGLAILQSGEMLYSGSLDK----------------- 877 (1094)
Q Consensus 847 ~~~~l~~H~~--------------------------------~V~sv~fspdg~~LaSgs~Dg----------------- 877 (1094)
.+..+..... ....++++|++..++.++.++
T Consensus 202 ~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~ 281 (677)
T 1kb0_A 202 RKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLY 281 (677)
T ss_dssp EEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred EEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCee
Confidence 6666543211 113578899999999888764
Q ss_pred --cEEEEECCCCceEEEEec-ccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcC
Q 001349 878 --TARVWSIGNEEIHCVQVH-DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQD 954 (1094)
Q Consensus 878 --tI~vWdi~~~~~~~~~~~-~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~D 954 (1094)
+|..+|..+|+..-.... .+...-......+.......+|+.. +.+++++.+
T Consensus 282 ~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~-------------------------~~l~~~~~~ 336 (677)
T 1kb0_A 282 LASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPR-------------------------KVILHAPKN 336 (677)
T ss_dssp TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEE-------------------------EEEEECCTT
T ss_pred eEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEe-------------------------eEEEEECCC
Confidence 488899998863322221 1111100000000000011122100 137788889
Q ss_pred CeEEEEECCCCceeEEeccce-----eecCCCC------------------------CeEEEEEeCCccEEEEEECC---
Q 001349 955 GAIQEIDLATGTFATIQTGHR-----KLLGKAN------------------------PVHALQVHNGLVYTASTSLD--- 1002 (1094)
Q Consensus 955 g~I~iwDl~~~~~~~~~~~~~-----~~~~h~~------------------------~V~sl~fs~~~~~las~s~D--- 1002 (1094)
|.++++|..+|+.+....... .+..... .-..++|+|+..++.....+
T Consensus 337 G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~ 416 (677)
T 1kb0_A 337 GFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPV 416 (677)
T ss_dssp SEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCC
T ss_pred CEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcce
Confidence 999999999998875432110 0000000 01256788765555443221
Q ss_pred ---------------------------------------CCEEEEEECCCCeEEEEecCCCCEEEE--EEeCCEEEEEEc
Q 001349 1003 ---------------------------------------GAAVKMWSTSNYNMVGSLPTLSEVRAM--VVSSELVYLGCK 1041 (1094)
Q Consensus 1003 ---------------------------------------g~~I~iwd~~~~~~~~~~~~~~~v~~l--~~spd~l~sgs~ 1041 (1094)
.+.|..||+.+++.+..+.+...+.+. ....+.+++++.
T Consensus 417 ~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~ 496 (677)
T 1kb0_A 417 NLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTA 496 (677)
T ss_dssp EEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECT
T ss_pred eeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECC
Confidence 148999999999999988865444333 334458888999
Q ss_pred CCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEE
Q 001349 1042 GGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVI 1081 (1094)
Q Consensus 1042 dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~s 1081 (1094)
||.+++||..+|+.+..+..++.....-+.|..+|+.+++
T Consensus 497 dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 497 DGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 9999999999999999997666545556677788875543
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=6.2e-09 Score=128.89 Aligned_cols=311 Identities=14% Similarity=0.049 Sum_probs=213.3
Q ss_pred HHHHHHhhhccccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccch
Q 001349 269 LKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSV 348 (1094)
Q Consensus 269 l~~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~ 348 (1094)
+...+..|...+..+.++.|+..+..+++..+....+. ...++..++++|- +.++.+++.++.+|.++....+..
T Consensus 58 i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~----~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~nL~~~~~~~ 132 (644)
T 2z6h_A 58 VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIF----KSGGIPALVKMLG-SPVDSVLFYAITTLHNLLLHQEGA 132 (644)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHH----TTTHHHHHHHHTT-CSSHHHHHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHH----HcCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHhCcchh
Confidence 44455555544444556677777776665433112222 2344555666554 467999999999999997766555
Q ss_pred hhhhccCCCcHHHHHHHHhcCh----HHHHHHHHhcCC-ChHHHHHh---hhhHHHHHHHHhccccccccccCchhhHHH
Q 001349 349 IHTLTRVESDVERIVALFKKGL----LEAVVLIDLLRP-STRTLIEM---DMMESLMTVIKKKEEDFLKMCLKPKSVSVL 420 (1094)
Q Consensus 349 ~~~i~~~~~~~~~L~~lLk~g~----~~Aa~~l~~L~~-~~~~~~~~---~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~ 420 (1094)
+..+. ..+.++.|+.+|+.+. ..|+.+|.+|.. .++++..+ +.++.|+++|+...... -..++..
T Consensus 133 ~~~v~-~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~------~~~~a~~ 205 (644)
T 2z6h_A 133 KMAVR-LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK------LLWTTSR 205 (644)
T ss_dssp HHHHH-HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHH------HHHHHHH
T ss_pred HHHHH-HCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHH------HHHHHHH
Confidence 55554 4578999999999872 233447888875 56665444 45599999998764221 1234555
Q ss_pred HHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcC
Q 001349 421 LLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAAS 500 (1094)
Q Consensus 421 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~ 500 (1094)
+|..| +.+.+++..+++.|+++.|++.++.++.+-+..++.+|.++...... .......++.|+.++.+.+
T Consensus 206 ~L~nL------s~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~---~~~~~~~i~~Lv~lL~~~d 276 (644)
T 2z6h_A 206 VLKVL------SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQLLGSDD 276 (644)
T ss_dssp HHHHH------TTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTT---CCSCHHHHHHHHHHTTCSC
T ss_pred HHHHH------hcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchh---hhhhhhHHHHHHHHHcCCC
Confidence 56655 34567899999999999999999999999999999998877654322 1223356888999999888
Q ss_pred CchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcC--CccchhHHHHHHhhhcccCCC----CCC
Q 001349 501 DGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTAN--HDQCPVVAGLLLQLDLLAEPR----KMS 574 (1094)
Q Consensus 501 ~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~--~~~~~~~a~~l~~l~~~~~~~----~~~ 574 (1094)
...+..|...|..|...+. ...+.+.+.|.+.. |+.+|+..+ ++-+.-++..|.+|-.- .+. +..
T Consensus 277 ~~v~~~a~~aL~~L~~~~~-----~~~~~v~~~g~v~~---Lv~lL~~~~~~~~v~~~a~~aL~nL~~~-~~~~~~~q~~ 347 (644)
T 2z6h_A 277 INVVTCAAGILSNLTCNNY-----KNKMMVCQVGGIEA---LVRTVLRAGDREDITEPAICALRHLTSR-HQEAEMAQNA 347 (644)
T ss_dssp HHHHHHHHHHHHHHHTTCH-----HHHHHHHHTTHHHH---HHHHHHHHTTCHHHHHHHHHHHHHHTSS-STTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCH-----HHHHHHHHcCCHHH---HHHHHHccCCcHHHHHHHHHHHHHHhcC-CchHHHHHHH
Confidence 8888889999999876532 22344455665554 777787654 35556677888887431 111 122
Q ss_pred ccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhccc
Q 001349 575 IYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 609 (1094)
Q Consensus 575 ~~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~g 609 (1094)
+...++++.|+..|.+.....++..|+.+|.|++.
T Consensus 348 v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~ 382 (644)
T 2z6h_A 348 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 382 (644)
T ss_dssp HHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHccChHHHHHHhCccCchHHHHHHHHHHHHHcc
Confidence 33457899999999988767889999999999985
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.8e-09 Score=116.22 Aligned_cols=237 Identities=14% Similarity=0.149 Sum_probs=181.8
Q ss_pred cHHHHHHHHhcC----hHHHHHHHHhcCCCh-HHHHHh---hhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCC
Q 001349 358 DVERIVALFKKG----LLEAVVLIDLLRPST-RTLIEM---DMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDS 429 (1094)
Q Consensus 358 ~~~~L~~lLk~g----~~~Aa~~l~~L~~~~-~~~~~~---~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~ 429 (1094)
.++.|+.+|+++ ..+|+..|.+|...+ ++...+ +.+|+|+.+|..++.. -+..|...|..|..
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~-------v~~~a~~~L~~l~~-- 73 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSE-------VQKEAARALANIAS-- 73 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHH-------HHHHHHHHHHHHTT--
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHH-------HHHHHHHHHHHHHc--
Confidence 578888889887 567888888885433 344443 4569999999876422 25566667777732
Q ss_pred cccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHH
Q 001349 430 EESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVC 509 (1094)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 509 (1094)
.+.+++..+...|+++.|+..++.++.+-+..|+.+|.++...+..++..+.+.+.++++++++.+.+...+..++.
T Consensus 74 ---~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~ 150 (252)
T 4hxt_A 74 ---GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 150 (252)
T ss_dssp ---SCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred ---CChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHH
Confidence 23678889999999999999999999999999999999888888889999999999999999999988888999999
Q ss_pred HHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhh
Q 001349 510 FLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLR 589 (1094)
Q Consensus 510 ~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~ 589 (1094)
.|..+...+ ....+.+.+.|.++. |+.++++..++-+.-++..|.+|-.-.+.....+...++++.|+..+.
T Consensus 151 ~L~~l~~~~-----~~~~~~~~~~~~i~~---L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~ 222 (252)
T 4hxt_A 151 ALANIASGP-----DEAIKAIVDAGGVEV---LVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLT 222 (252)
T ss_dssp HHHHHTTSC-----HHHHHHHHHTTHHHH---HHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGG
T ss_pred HHHHHHcCC-----HHHHHHHHHCcCHHH---HHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHC
Confidence 999997652 222344455665555 888888777777888888998887622223334456778999999998
Q ss_pred cCCChHHHHHHHHHHHhcccccccCC
Q 001349 590 NSDYPAAQLAAAKTIVSLQGRFTTSG 615 (1094)
Q Consensus 590 ~~~~~~~~~~~~~~~~~l~g~~s~~g 615 (1094)
++ .+.+|..|+.+|.+|........
T Consensus 223 ~~-~~~v~~~a~~~L~~l~~~~~~~~ 247 (252)
T 4hxt_A 223 ST-DSEVQKEAQRALENIKSGGWLEH 247 (252)
T ss_dssp CS-CHHHHHHHHHHHHHHHHTCBCCC
T ss_pred CC-cHHHHHHHHHHHHHHHcCCCccc
Confidence 65 45789999999999987655443
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=98.96 E-value=7.5e-09 Score=111.37 Aligned_cols=229 Identities=15% Similarity=0.168 Sum_probs=172.8
Q ss_pred hhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCC-hHHHHHh
Q 001349 316 NGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPS-TRTLIEM 390 (1094)
Q Consensus 316 ~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~-~~~~~~~ 390 (1094)
..+++.|- +.++.++..|+.+|.++...++.++..+.+ .+.++.|+.+|+.+ ...|+.+|.+|... +++...+
T Consensus 5 ~~L~~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 5 EKLVKLLT-STDSETQKEAARDLAEIASGPASAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHHHhcCCcHHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 33455554 456899999999999998777767777774 56899999999987 67888899999876 5555444
Q ss_pred ---hhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHH
Q 001349 391 ---DMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVG 467 (1094)
Q Consensus 391 ---~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 467 (1094)
+.+|+|+.+|..++.. -+..|..+|..|.. .+.+++..+...|+++.|++.++.++.+.+..|+.
T Consensus 83 ~~~~~i~~l~~ll~~~~~~-------v~~~a~~~L~~l~~-----~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~ 150 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSE-------VQKEAARALANIAS-----GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 150 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHH-------HHHHHHHHHHHHTT-----SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHcCCCHH-------HHHHHHHHHHHHHc-----CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHH
Confidence 5669999999865422 25667777877732 34578888999999999999999999999999999
Q ss_pred HHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHh
Q 001349 468 ILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQ 547 (1094)
Q Consensus 468 ~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~ 547 (1094)
+|.++...+...+..+.+.+.++.++.++.+.+...+..|+..|..+...+ ....+.+.+.|.+.. |+.+++
T Consensus 151 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-----~~~~~~l~~~~~i~~---L~~ll~ 222 (252)
T 4hxt_A 151 ALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-----TSAIKAIVDAGGVEV---LQKLLT 222 (252)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB-----HHHHHHHHHTTHHHH---HHHGGG
T ss_pred HHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-----HHHHHHHHHCCCHHH---HHHHHC
Confidence 998888777778888999999999999999888888889999999997642 233455556665554 666665
Q ss_pred hcCCccchhHHHHHHhhhc
Q 001349 548 TANHDQCPVVAGLLLQLDL 566 (1094)
Q Consensus 548 ~~~~~~~~~~a~~l~~l~~ 566 (1094)
...++-+..++..|.+|--
T Consensus 223 ~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 223 STDSEVQKEAQRALENIKS 241 (252)
T ss_dssp CSCHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHc
Confidence 5444444445555544444
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.2e-07 Score=117.78 Aligned_cols=294 Identities=11% Similarity=0.085 Sum_probs=169.1
Q ss_pred cCcEEEEeeCCCCeEEEeCCccee--ecccCCC----------c-EEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEE
Q 001349 784 EMVKVLSNGHDSSADFWNHRELVH--VDSSENG----------K-VLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQ 850 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~~~~~--~~~~h~~----------~-V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~ 850 (1094)
.+..++.++.++.|.-+|..+... ....+.. . -..+++..+.++.++.||.|..||..+| +.+..
T Consensus 69 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG--~~~W~ 146 (689)
T 1yiq_A 69 VDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTG--QRAWS 146 (689)
T ss_dssp ETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTC--CEEEE
T ss_pred ECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCC--CEeee
Confidence 455667777788888888753222 2111111 0 1234556679999999999999999999 56666
Q ss_pred ecc--cCCCeEEEEEec---CCCEEEEEe------CCCcEEEEECCCCceEEEEecccCccce-----------------
Q 001349 851 IRE--HTKAVTGLAILQ---SGEMLYSGS------LDKTARVWSIGNEEIHCVQVHDIKDQIQ----------------- 902 (1094)
Q Consensus 851 l~~--H~~~V~sv~fsp---dg~~LaSgs------~DgtI~vWdi~~~~~~~~~~~~~~~~V~----------------- 902 (1094)
+.. +......+..+| ++. ++.++ .||.|+.||..+|+..-........+..
T Consensus 147 ~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 225 (689)
T 1yiq_A 147 VDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGD 225 (689)
T ss_dssp EECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSS
T ss_pred ecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCc
Confidence 543 211111122222 444 44443 3789999999999743222110000000
Q ss_pred ------eeeecCceEEEeeCCCeEEEEEeCCe-------------------EEEEcCCCC--ce----------------
Q 001349 903 ------NLAVSNSILCFIPQGAGIKVHLRNGK-------------------TKLLNSSKY--PK---------------- 939 (1094)
Q Consensus 903 ------~v~~~~~~~~fspdg~~l~~~~~~g~-------------------i~l~~~~~~--v~---------------- 939 (1094)
.-...-....+.|++..+.+...++. +..++.... +.
T Consensus 226 ~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~ 305 (689)
T 1yiq_A 226 AYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQ 305 (689)
T ss_dssp THHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCS
T ss_pred eeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCC
Confidence 00000012346666665555554432 444432110 00
Q ss_pred -EEEEe---CC----EEEEEEcCCeEEEEECCCCceeEEeccce-----e-----------------ecCCC--------
Q 001349 940 -CLALV---QG----KVYCGCQDGAIQEIDLATGTFATIQTGHR-----K-----------------LLGKA-------- 981 (1094)
Q Consensus 940 -~l~~s---~~----~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~-----~-----------------~~~h~-------- 981 (1094)
.+... ++ .++.++.+|.++++|..+|+.+....... . +....
T Consensus 306 ~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~ 385 (689)
T 1yiq_A 306 HMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAF 385 (689)
T ss_dssp CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCT
T ss_pred CcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCc
Confidence 01111 23 47888999999999999999873221100 0 00000
Q ss_pred ---CCeEEEEEeCCccEEEEEECC--------------------------------------------CCEEEEEECCCC
Q 001349 982 ---NPVHALQVHNGLVYTASTSLD--------------------------------------------GAAVKMWSTSNY 1014 (1094)
Q Consensus 982 ---~~V~sl~fs~~~~~las~s~D--------------------------------------------g~~I~iwd~~~~ 1014 (1094)
..-..++|+|+..++.....+ .+.|+.||+.++
T Consensus 386 ~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG 465 (689)
T 1yiq_A 386 WGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ 465 (689)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT
T ss_pred ccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCC
Confidence 011236777765555443211 138999999999
Q ss_pred eEEEEecCCCCEE--EEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEE
Q 001349 1015 NMVGSLPTLSEVR--AMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLV 1080 (1094)
Q Consensus 1015 ~~~~~~~~~~~v~--~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~ 1080 (1094)
+.+..+.++.... .+....+.+++|+.||.|+.||..+|+.+..+..++.....-+.|..||+..+
T Consensus 466 ~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 466 QAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp EEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEE
Confidence 9999887544333 33444558999999999999999999999998655544445577788887443
|
| >1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=4e-10 Score=95.34 Aligned_cols=47 Identities=23% Similarity=0.464 Sum_probs=42.1
Q ss_pred ceeccCccccccCc-EEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCC
Q 001349 163 DFVCPITTHIFDDP-VTLETGQTYERRAIQEWIERGNSSCPITRQKLSS 210 (1094)
Q Consensus 163 ~~~CpIc~~~~~dP-v~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~ 210 (1094)
+..||||++.+.+| ++++|||+||+.||.+|+.. ...||.||+.+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 67899999999997 67899999999999999987 4589999998763
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.95 E-value=1.2e-07 Score=105.27 Aligned_cols=230 Identities=6% Similarity=0.030 Sum_probs=145.4
Q ss_pred cccccCcEEEE-------eeCCCCeEEEeCCc-ceeecc-----cCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCc
Q 001349 780 PLAFEMVKVLS-------NGHDSSADFWNHRE-LVHVDS-----SENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI 844 (1094)
Q Consensus 780 ~~~~d~~~l~s-------~s~dg~I~vWd~~~-~~~~~~-----~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~ 844 (1094)
.+..++..+++ +..++.|.+||... ....+. ++...+.+++++++ .++.++.++.|.+||.. +.
T Consensus 24 ~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~ 102 (314)
T 1pjx_A 24 VFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GT 102 (314)
T ss_dssp EECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SC
T ss_pred eECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CC
Confidence 34456776666 57788999999652 222222 25577999999986 66666666689999998 63
Q ss_pred ceeEEE-ec----ccCCCeEEEEEecCCCEEEEEeCC---------------CcEEEEECCCCceEEEEecccCccceee
Q 001349 845 LHLIQQ-IR----EHTKAVTGLAILQSGEMLYSGSLD---------------KTARVWSIGNEEIHCVQVHDIKDQIQNL 904 (1094)
Q Consensus 845 ~~~~~~-l~----~H~~~V~sv~fspdg~~LaSgs~D---------------gtI~vWdi~~~~~~~~~~~~~~~~V~~v 904 (1094)
.... .. .+...+.+++++++|+++++...+ +.|..||.. ++...... .......
T Consensus 103 --~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~--~~~~~~~- 176 (314)
T 1pjx_A 103 --FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT--AFQFPNG- 176 (314)
T ss_dssp --EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE--EESSEEE-
T ss_pred --EEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc--CCCCcce-
Confidence 3222 11 122458899999999988877665 456666655 43222111 0111122
Q ss_pred eecCceEEEe----eCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEE-EcCCeEEEEECC-CCceeEEeccceeec
Q 001349 905 AVSNSILCFI----PQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCG-CQDGAIQEIDLA-TGTFATIQTGHRKLL 978 (1094)
Q Consensus 905 ~~~~~~~~fs----pdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sg-s~Dg~I~iwDl~-~~~~~~~~~~~~~~~ 978 (1094)
++++ |+|+. ++++ ..++.|.+||+. ++..... .....+.
T Consensus 177 ------i~~~~~~d~dg~~----------------------------l~v~~~~~~~i~~~~~~~~g~~~~~-~~~~~~~ 221 (314)
T 1pjx_A 177 ------IAVRHMNDGRPYQ----------------------------LIVAETPTKKLWSYDIKGPAKIENK-KVWGHIP 221 (314)
T ss_dssp ------EEEEECTTSCEEE----------------------------EEEEETTTTEEEEEEEEETTEEEEE-EEEEECC
T ss_pred ------EEEecccCCCCCE----------------------------EEEEECCCCeEEEEECCCCCccccc-eEEEECC
Confidence 2255 55543 3333 456788888876 3432110 0001222
Q ss_pred CCC-CCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEE-cCCeEEEEECCC
Q 001349 979 GKA-NPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQKR 1052 (1094)
Q Consensus 979 ~h~-~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs-~dg~I~vwd~~t 1052 (1094)
++. ..+..+++++++.+.++...++ .|.+||..+++.+..+. +...+.+++++++ .+++++ .++.|..|++..
T Consensus 222 ~~~~~~p~~i~~d~~G~l~v~~~~~~-~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 222 GTHEGGADGMDFDEDNNLLVANWGSS-HIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CCSSCEEEEEEEBTTCCEEEEEETTT-EEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCCCCCceEECCCCCEEEEEcCCC-EEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 333 4578899999988888776665 89999998777766666 4477999999887 466655 468899999864
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.95 E-value=9.9e-08 Score=106.21 Aligned_cols=248 Identities=8% Similarity=0.021 Sum_probs=150.4
Q ss_pred ccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 001349 810 SSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGN 886 (1094)
Q Consensus 810 ~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~ 886 (1094)
..+........|+++ +++++..++.|..|+. ++. ...+..+...+..++++++|+++++...++.|.+|+.+
T Consensus 41 ~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~---~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~- 115 (305)
T 3dr2_A 41 YDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT---VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD- 115 (305)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC---EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred ecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC---EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-
Confidence 334456678899985 6788888999999998 442 34455567789999999999977766667889999986
Q ss_pred CceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCc
Q 001349 887 EEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGT 966 (1094)
Q Consensus 887 ~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~ 966 (1094)
++...+......... ..+..+++.++|+..++-...|...-+.... .......+.|..||..+++
T Consensus 116 g~~~~~~~~~~~~~~----~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~-----------~~~~~~~~~v~~~d~~~g~ 180 (305)
T 3dr2_A 116 GQAHLLVGRYAGKRL----NSPNDLIVARDGAIWFTDPPFGLRKPSQGCP-----------ADPELAHHSVYRLPPDGSP 180 (305)
T ss_dssp SCEEEEECEETTEEC----SCCCCEEECTTSCEEEECCSGGGSCGGGSCC-----------CCCSSSCEEEEEECSSSCC
T ss_pred CCEEEEEeccCCCcc----CCCCCEEECCCCCEEEeCcCCCccccccccc-----------cccccCCCeEEEEcCCCCc
Confidence 543333221111000 1122344777776433210000000000000 0000012467778877776
Q ss_pred eeEEeccceeecCCCCCeEEEEEeCCccEEEEEECC-----CCEEEEEECCCCeEE--EEec--CCCCEEEEEEeCC-EE
Q 001349 967 FATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLD-----GAAVKMWSTSNYNMV--GSLP--TLSEVRAMVVSSE-LV 1036 (1094)
Q Consensus 967 ~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~D-----g~~I~iwd~~~~~~~--~~~~--~~~~v~~l~~spd-~l 1036 (1094)
..... .....+.++|++++..+..+... .+.|.+||+..+... ..+. ....+..++++++ .+
T Consensus 181 ~~~~~--------~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l 252 (305)
T 3dr2_A 181 LQRMA--------DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL 252 (305)
T ss_dssp CEEEE--------EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE
T ss_pred EEEEe--------cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE
Confidence 54321 12356789999999866665544 148999998765421 1111 2344567888887 56
Q ss_pred EEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEE
Q 001349 1037 YLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQ 1089 (1094)
Q Consensus 1037 ~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~ 1089 (1094)
++++.+ .|.+||. .++.+..+. .+. .+.+++|+++++.|+.++.++..+
T Consensus 253 wv~~~~-gv~~~~~-~g~~~~~~~-~~~-~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 253 WSSSGT-GVCVFDS-DGQLLGHIP-TPG-TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp EECCSS-EEEEECT-TSCEEEEEE-CSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred EEecCC-cEEEECC-CCCEEEEEE-CCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 666654 5999998 577777774 233 589999999999998888765433
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.9e-08 Score=115.07 Aligned_cols=177 Identities=7% Similarity=0.006 Sum_probs=126.1
Q ss_pred cccccccccCcEEEEeeCCCCeEEEeCCcce------------eecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCC
Q 001349 776 RKYSPLAFEMVKVLSNGHDSSADFWNHRELV------------HVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGS 843 (1094)
Q Consensus 776 ~~~~~~~~d~~~l~s~s~dg~I~vWd~~~~~------------~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~ 843 (1094)
.....++.....+++|+.++. .+|+.+... .....+.+ |+.++|..++|+++ .+|.|++||+.+.
T Consensus 40 ~nlLais~~~gll~a~~~~~l-~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~fd~~~L~v~-~~~~l~v~dv~sl 116 (388)
T 1xip_A 40 LQNLDISNSKSLFVAASGSKA-VVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCFHGDQVLVS-TRNALYSLDLEEL 116 (388)
T ss_dssp CBCEEEETTTTEEEEEETTEE-EEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEEETTEEEEE-ESSEEEEEESSST
T ss_pred ccEEEEcCCCCEEEEeCCCEE-EEEEhhHhhhhhccccccccceEEeeCCC-eeEEEECCCEEEEE-cCCcEEEEEchhh
Confidence 344556667888999998854 569876222 12334667 99999944588888 8899999999876
Q ss_pred cceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEE
Q 001349 844 ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVH 923 (1094)
Q Consensus 844 ~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~ 923 (1094)
........|...|.++.+.+. .+++++.||+|.+||+.++.... ....
T Consensus 117 --~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-----~~~~----------------------- 164 (388)
T 1xip_A 117 --SEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-----LAQN----------------------- 164 (388)
T ss_dssp --TCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-----EEES-----------------------
T ss_pred --hccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-----ccCC-----------------------
Confidence 344556678888998887754 38899999999999999865321 1223
Q ss_pred EeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCce--eEEeccceeec---CCCCCeEEEEEeCCccEEEE
Q 001349 924 LRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTF--ATIQTGHRKLL---GKANPVHALQVHNGLVYTAS 998 (1094)
Q Consensus 924 ~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~--~~~~~~~~~~~---~h~~~V~sl~fs~~~~~las 998 (1094)
|+|++|++..++.|..||++++|+...+.. ...+.....+. +|...|.++.|.+++.++++
T Consensus 165 --------------Vs~v~WSpkG~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 165 --------------VTSFDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp --------------EEEEEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred --------------ceEEEEcCCceEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 344445544467789999999999887774 43332222223 47789999999999999988
Q ss_pred EEC
Q 001349 999 TSL 1001 (1094)
Q Consensus 999 ~s~ 1001 (1094)
...
T Consensus 231 y~~ 233 (388)
T 1xip_A 231 FGN 233 (388)
T ss_dssp EEC
T ss_pred EcC
Confidence 654
|
| >2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A | Back alignment and structure |
|---|
Probab=98.93 E-value=6e-10 Score=89.91 Aligned_cols=46 Identities=24% Similarity=0.429 Sum_probs=41.6
Q ss_pred ceeccCccccccC----cEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCC
Q 001349 163 DFVCPITTHIFDD----PVTLETGQTYERRAIQEWIERGNSSCPITRQKLS 209 (1094)
Q Consensus 163 ~~~CpIc~~~~~d----Pv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~ 209 (1094)
+..||||++.|.+ +++++|||.||..||.+|+... ..||.||+.+.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 6889999999977 7889999999999999999985 68999998765
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=98.93 E-value=9.9e-09 Score=123.97 Aligned_cols=299 Identities=10% Similarity=0.089 Sum_probs=213.8
Q ss_pred hHhHHHHHHHHHHHHHhccc-hHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHH
Q 001349 283 NESEMAVLQIERCWLEASME-LDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVER 361 (1094)
Q Consensus 283 ~~~e~a~~~i~~~~~~~~~~-~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~ 361 (1094)
..++.|+..+..++....+. ..+.. ..++..++.+|- +.+..+++.|+.+|.++.......+..+.. .+.++.
T Consensus 146 ~v~~~A~~~L~~l~~~~~~~~~~~~~----~g~i~~Lv~lL~-~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~-~~~l~~ 219 (530)
T 1wa5_B 146 MLQLEAAWALTNIASGTSAQTKVVVD----ADAVPLFIQLLY-TGSVEVKEQAIWALGNVAGDSTDYRDYVLQ-CNAMEP 219 (530)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHH----TTCHHHHHHHHH-HCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHH----CCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCCCccchHHHHH-cCcHHH
Confidence 34566666666665433222 22222 223343455444 468999999999999997665556665554 578999
Q ss_pred HHHHHhcC----hHHHHHHHHhcC----CChHHHHHhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccc
Q 001349 362 IVALFKKG----LLEAVVLIDLLR----PSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESI 433 (1094)
Q Consensus 362 L~~lLk~g----~~~Aa~~l~~L~----~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~ 433 (1094)
|+.+|+.. ...|+.+|.+|. +.......-+.+|.|+.+|..++.. -...|+..|..|....
T Consensus 220 L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~-------v~~~a~~~L~~L~~~~---- 288 (530)
T 1wa5_B 220 ILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTE-------TLVDACWAISYLSDGP---- 288 (530)
T ss_dssp HHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHH-------HHHHHHHHHHHHHSSC----
T ss_pred HHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHH-------HHHHHHHHHHHHhCCC----
Confidence 99999876 456778898885 3334444455669999999765321 1455666677774332
Q ss_pred cccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHH
Q 001349 434 VSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSE 513 (1094)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~e 513 (1094)
.+....++..|+++.|+..+..++...+..|+.+|..+...+......+.+.+.+++++.+|.+.....|..|+.+|..
T Consensus 289 -~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~ 367 (530)
T 1wa5_B 289 -QEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 367 (530)
T ss_dssp -HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3456677888999999999999999999999999988887777777788888999999999998877788889999998
Q ss_pred HHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCC--C-CCCccHHHHHHHHHHHhhc
Q 001349 514 LVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEP--R-KMSIYREEAIDTLISCLRN 590 (1094)
Q Consensus 514 l~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~--~-~~~~~reea~~~~~~~l~~ 590 (1094)
+...+. ...+.+-+.|.++. |+.+|+...++-+-.++..|.+|-.-.++ . ...+...++++.|+..|..
T Consensus 368 l~~~~~-----~~~~~~~~~~~l~~---L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~ 439 (530)
T 1wa5_B 368 ITAGNT-----EQIQAVIDANLIPP---LVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI 439 (530)
T ss_dssp HTTSCH-----HHHHHHHHTTCHHH---HHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTT
T ss_pred HHcCCH-----HHHHHHHHCCCHHH---HHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhC
Confidence 876422 22333445555554 88888888888888999999999775544 1 1223355689999999987
Q ss_pred CCChHHHHHHHHHHHhcc
Q 001349 591 SDYPAAQLAAAKTIVSLQ 608 (1094)
Q Consensus 591 ~~~~~~~~~~~~~~~~l~ 608 (1094)
. .+.++..|+.+|.++.
T Consensus 440 ~-~~~v~~~al~aL~~l~ 456 (530)
T 1wa5_B 440 A-DNRIIEVTLDALENIL 456 (530)
T ss_dssp C-CHHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHH
Confidence 5 5678999999998875
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-08 Score=122.31 Aligned_cols=300 Identities=13% Similarity=0.101 Sum_probs=214.2
Q ss_pred chHhHHHHHHHHHHHHHhccc-hHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHH
Q 001349 282 LNESEMAVLQIERCWLEASME-LDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVE 360 (1094)
Q Consensus 282 l~~~e~a~~~i~~~~~~~~~~-~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~ 360 (1094)
...++.|+..+..++....++ ..+.. ..++..++.+|. +.+..+++.|+.+|.++......++..+.. .+.++
T Consensus 132 ~~v~~~A~~~L~~l~~~~~~~~~~~~~----~g~i~~L~~lL~-~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~-~g~l~ 205 (528)
T 4b8j_A 132 PQLQFEAAWALTNIASGTSENTKVVID----HGAVPIFVKLLG-SSSDDVREQAVWALGNVAGDSPKCRDLVLA-NGALL 205 (528)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHH----TTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHTCHHHHHHHHH-TTCHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHh----CCcHHHHHHHhc-CCCHHHHHHHHHHHHHHhCCChhhHHHHHH-CCcHH
Confidence 344567777777776543332 22222 233444555444 468899999999999997666656666664 47899
Q ss_pred HHHHHHhc-C----hHHHHHHHHhcCCC---hHHHHHhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCccc
Q 001349 361 RIVALFKK-G----LLEAVVLIDLLRPS---TRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEES 432 (1094)
Q Consensus 361 ~L~~lLk~-g----~~~Aa~~l~~L~~~---~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~ 432 (1094)
.|+.+|+. . ...|+.+|.+|... ......-+.+|.|+.+|...+.. -...++..|..|..+.
T Consensus 206 ~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-------v~~~a~~aL~~l~~~~--- 275 (528)
T 4b8j_A 206 PLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEE-------VLTDACWALSYLSDGT--- 275 (528)
T ss_dssp HHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHH-------HHHHHHHHHHHHTSSC---
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHH-------HHHHHHHHHHHHHcCC---
Confidence 99999954 3 56788899988433 33333445559999999765322 1455666677774332
Q ss_pred ccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhc-CCchhHHHHHHH
Q 001349 433 IVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAA-SDGERFEIVCFL 511 (1094)
Q Consensus 433 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~l 511 (1094)
......++..|+++.|+..+..++...+..|+.+|..+...+...+..+.+.+.++.|+.+|.+. ....+..|+..|
T Consensus 276 --~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L 353 (528)
T 4b8j_A 276 --NDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTI 353 (528)
T ss_dssp --HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred --HHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 23345677889999999999999999999999999988887788888888999999999999988 777888899999
Q ss_pred HHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCC-ccHHHHHHHHHHHhhc
Q 001349 512 SELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMS-IYREEAIDTLISCLRN 590 (1094)
Q Consensus 512 ~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~-~~reea~~~~~~~l~~ 590 (1094)
..+...+ ....+.+-+.|.++ .|+..|+...++-+.-++..|.+|-.-+++.... +...++++.|+..|..
T Consensus 354 ~nl~~~~-----~~~~~~~~~~~~i~---~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~ 425 (528)
T 4b8j_A 354 SNITAGN-----KDQIQAVINAGIIG---PLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLIC 425 (528)
T ss_dssp HHHHTSC-----HHHHHHHHHTTCHH---HHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred HHHHCCC-----HHHHHHHHHCCCHH---HHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcC
Confidence 9987642 23334444455544 4888888888888889999999987754443222 2245788999999987
Q ss_pred CCChHHHHHHHHHHHhcc
Q 001349 591 SDYPAAQLAAAKTIVSLQ 608 (1094)
Q Consensus 591 ~~~~~~~~~~~~~~~~l~ 608 (1094)
.+ ..++..++.+|.++.
T Consensus 426 ~d-~~v~~~al~~L~~l~ 442 (528)
T 4b8j_A 426 PD-IRIVTVCLEGLENIL 442 (528)
T ss_dssp SC-HHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHH
Confidence 54 577889999998874
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1.3e-08 Score=119.75 Aligned_cols=302 Identities=13% Similarity=0.083 Sum_probs=210.7
Q ss_pred cchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHH
Q 001349 281 ILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVE 360 (1094)
Q Consensus 281 ~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~ 360 (1094)
....+..|+..+..++....++... .....++..++++|- +.++.+++.|+.+|.++.......+..+.. .+.++
T Consensus 78 ~~~v~~~a~~~L~~l~~~~~~~~~~---~~~~~~i~~L~~lL~-~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~-~~~i~ 152 (450)
T 2jdq_A 78 NCTLQFESAWVLTNIASGNSLQTRI---VIQAGAVPIFIELLS-SEFEDVQEQAVWALGNIAGDSTMCRDYVLD-CNILP 152 (450)
T ss_dssp CHHHHHHHHHHHHHHHSSCHHHHHH---HHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHH
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHH---HHhCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHccCCHHHHHHHHH-CCCHH
Confidence 3343556666666665432222111 112334444555544 568999999999999998776655655553 56899
Q ss_pred HHHHHHhc-C----hHHHHHHHHhcCCC----hHHHHHhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcc
Q 001349 361 RIVALFKK-G----LLEAVVLIDLLRPS----TRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEE 431 (1094)
Q Consensus 361 ~L~~lLk~-g----~~~Aa~~l~~L~~~----~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~ 431 (1094)
.|+.+|+. . ...|+.+|.+|... ......-+.+|+|+.+|..++.. -...+...|..|...
T Consensus 153 ~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~-------v~~~a~~~L~~l~~~--- 222 (450)
T 2jdq_A 153 PLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTD-------VLADACWALSYLSDG--- 222 (450)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHH-------HHHHHHHHHHHHTSS---
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHH-------HHHHHHHHHHHHHCC---
Confidence 99999986 3 56778888888532 22222245569999999865321 134555566666332
Q ss_pred cccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHH
Q 001349 432 SIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFL 511 (1094)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 511 (1094)
..++...++..|+++.|+..+..++.+.+..|+.+|..+...+...+..+.+.+.++.++.++.+.+...|..|+..|
T Consensus 223 --~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L 300 (450)
T 2jdq_A 223 --PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTI 300 (450)
T ss_dssp --SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred --CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 234566777889999999999999999999999999888777777777788888999999999988778888899999
Q ss_pred HHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCC-CccHHHHHHHHHHHhhc
Q 001349 512 SELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKM-SIYREEAIDTLISCLRN 590 (1094)
Q Consensus 512 ~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~-~~~reea~~~~~~~l~~ 590 (1094)
..+...+ ....+.+-+.|.+ ..|+..|+...++-+.-++..|.+|..-.+|... .+..++.++.|+..|..
T Consensus 301 ~~l~~~~-----~~~~~~~~~~~~l---~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~ 372 (450)
T 2jdq_A 301 SNITAGN-----RAQIQTVIDANIF---PALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTV 372 (450)
T ss_dssp HHHTTSC-----HHHHHHHHHTTHH---HHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGS
T ss_pred HHHHcCC-----HHHHHHHHHCCCH---HHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcC
Confidence 9887642 2223334444444 4588888888888888899999999764343222 23356789999999987
Q ss_pred CCChHHHHHHHHHHHhcc
Q 001349 591 SDYPAAQLAAAKTIVSLQ 608 (1094)
Q Consensus 591 ~~~~~~~~~~~~~~~~l~ 608 (1094)
+ ...++..|+.+|.++.
T Consensus 373 ~-~~~v~~~a~~aL~~l~ 389 (450)
T 2jdq_A 373 M-DSKIVQVALNGLENIL 389 (450)
T ss_dssp S-CHHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHH
Confidence 6 4678999999998875
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=5.2e-09 Score=110.76 Aligned_cols=186 Identities=12% Similarity=0.116 Sum_probs=139.3
Q ss_pred hhHhhhccCCch--HHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCC-ChHHHHH
Q 001349 317 GFVEILFNSVDP--RVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRP-STRTLIE 389 (1094)
Q Consensus 317 ~~v~~L~~s~~~--~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~-~~~~~~~ 389 (1094)
.+|+.|.. .++ +++..|...|.++...++.++..|... |.+|.|+.+|+++ ..+|+.+|.+|.. .++|+..
T Consensus 12 ~lV~lL~s-~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~-G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 12 RAVSMLEA-DHMLPSRISAAATFIQHECFQKSEARKRVNQL-RGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHTCCS-SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHT-THHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhCC-CCchHHHHHHHHHHHHHHHcCCcHHHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 35555544 455 888889999999977777788888754 6899999999998 5688899999976 6788877
Q ss_pred hhhh---HHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhh---cc------
Q 001349 390 MDMM---ESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLE---AE------ 457 (1094)
Q Consensus 390 ~~~~---~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---~~------ 457 (1094)
|... |+|+++|+...... -+..|..+|-.| +...+++..|++ ++|+.|++.+- .|
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~------~~e~a~~aL~nL------S~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~ 156 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLE------TKKQITGLLWNL------SSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDY 156 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHH------HHHHHHHHHHHH------HTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGC
T ss_pred HHHcCCHHHHHHHHccCCCHH------HHHHHHHHHHHH------HcChhhHHHHHh-ccHHHHHHHHhccccCCccccc
Confidence 7654 99999998632111 134444445555 455677888886 57999998763 33
Q ss_pred -------cHHHHHHHHHHHHHHhhccCcchhhHhhhc-CchhHHHHHHhc------CCchhHHHHHHHHHHHhc
Q 001349 458 -------WAEERIAAVGILLRCMQEDGKCRNSIADKA-ELAPVMESFMAA------SDGERFEIVCFLSELVKL 517 (1094)
Q Consensus 458 -------~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~-~~~~~~~l~~~~------~~~~~~~~~~~l~el~~~ 517 (1094)
+.+-+.+|+.+|..+...+...|..|.+.. -+++|++++++. +++..++|+..|..|...
T Consensus 157 ~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 157 PKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred ccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 457788898888766556668999999875 569999999984 456678999999988553
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.5e-08 Score=121.94 Aligned_cols=311 Identities=13% Similarity=0.044 Sum_probs=210.7
Q ss_pred HHHHHHhhhccccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccch
Q 001349 269 LKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSV 348 (1094)
Q Consensus 269 l~~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~ 348 (1094)
+...+..|..++..+.++.++..+..++...+....+.. .+++..++++|- +.++.+++.++.+|.++...++..
T Consensus 61 i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~----~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~ 135 (529)
T 1jdh_A 61 VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFK----SGGIPALVKMLG-SPVDSVLFYAITTLHNLLLHQEGA 135 (529)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHH----TTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHCTTH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHH----cCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCcch
Confidence 344444454433334456677777776554332122332 234444555544 567899999999999997765555
Q ss_pred hhhhccCCCcHHHHHHHHhcCh----HHHHHHHHhcCC-ChHHHHHh---hhhHHHHHHHHhccccccccccCchhhHHH
Q 001349 349 IHTLTRVESDVERIVALFKKGL----LEAVVLIDLLRP-STRTLIEM---DMMESLMTVIKKKEEDFLKMCLKPKSVSVL 420 (1094)
Q Consensus 349 ~~~i~~~~~~~~~L~~lLk~g~----~~Aa~~l~~L~~-~~~~~~~~---~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~ 420 (1094)
+..+. ..+.++.|+.+|+.+. ..|+.+|.+|.. .+++...+ +.++.|+++|+.+.... ...++..
T Consensus 136 ~~~i~-~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~------~~~~a~~ 208 (529)
T 1jdh_A 136 KMAVR-LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK------LLWTTSR 208 (529)
T ss_dssp HHHHH-HHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHH------HHHHHHH
T ss_pred HHHHH-HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHH------HHHHHHH
Confidence 55554 4568999999999872 344558888865 34554443 45699999999864221 1345555
Q ss_pred HHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcC
Q 001349 421 LLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAAS 500 (1094)
Q Consensus 421 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~ 500 (1094)
+|..| +.++.++..++..|+++.|++.++.++.+-+..++.+|.++...... .....+.++++++++.+.+
T Consensus 209 ~L~~l------~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~---~~~~~~~i~~L~~ll~~~~ 279 (529)
T 1jdh_A 209 VLKVL------SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQLLGSDD 279 (529)
T ss_dssp HHHHH------TTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT---CSCCHHHHHHHHHHTTCSC
T ss_pred HHHHH------hcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChh---hHHHHhHHHHHHHHHcCCC
Confidence 66655 34567889999999999999999999999999999988877654422 1223456889999998888
Q ss_pred CchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcC--CccchhHHHHHHhhhcccCCC----CCC
Q 001349 501 DGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTAN--HDQCPVVAGLLLQLDLLAEPR----KMS 574 (1094)
Q Consensus 501 ~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~--~~~~~~~a~~l~~l~~~~~~~----~~~ 574 (1094)
...+..|...|..|...+ ....+.+.+.|.+.. |+..|+..+ ++-+.-++..|..|-. .+|. +..
T Consensus 280 ~~v~~~a~~~L~~L~~~~-----~~~~~~~~~~~~v~~---L~~ll~~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~~~~ 350 (529)
T 1jdh_A 280 INVVTCAAGILSNLTCNN-----YKNKMMVCQVGGIEA---LVRTVLRAGDREDITEPAICALRHLTS-RHQEAEMAQNA 350 (529)
T ss_dssp HHHHHHHHHHHHHHTTTC-----HHHHHHHHHTTHHHH---HHHHHHHHTTCHHHHHHHHHHHHHHTS-SSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCC-----HHHHHHHHHcCChHH---HHHHHHccCCHHHHHHHHHHHHHHHHc-CCchHHHHHHH
Confidence 888989999999996642 223344556665554 777776543 3445567778888743 2232 223
Q ss_pred ccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhccc
Q 001349 575 IYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 609 (1094)
Q Consensus 575 ~~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~g 609 (1094)
+...++++.|+..|..+....++..++.+|.+++.
T Consensus 351 i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~ 385 (529)
T 1jdh_A 351 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 385 (529)
T ss_dssp HHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHcCChhHHHHHhccccchHHHHHHHHHHHHHhc
Confidence 44557899999999987766889999999999884
|
| >2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.1e-09 Score=94.25 Aligned_cols=53 Identities=15% Similarity=0.385 Sum_probs=44.4
Q ss_pred CCCCceeccCccccccCcEEc---CCcccccHHhHHHHHHhCCCCCCCCCcCCCCCC
Q 001349 159 TPPKDFVCPITTHIFDDPVTL---ETGQTYERRAIQEWIERGNSSCPITRQKLSSTK 212 (1094)
Q Consensus 159 ~~~~~~~CpIc~~~~~dPv~~---~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~ 212 (1094)
+..++..|+||++.|.+|..+ +|||.||+.||.+|+.. +..||.||+.+....
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSCC
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccccc
Confidence 345588999999999987654 99999999999999998 448999999876543
|
| >2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.8e-10 Score=96.92 Aligned_cols=52 Identities=21% Similarity=0.507 Sum_probs=45.5
Q ss_pred CCCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCC
Q 001349 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTK 212 (1094)
Q Consensus 159 ~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~ 212 (1094)
.+.+++.||||++.+.+ ++++|||+||+.||.+|+.. ...||.||+.+....
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCCC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCCC
Confidence 34558999999999999 99999999999999999985 668999999887554
|
| >1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=5.7e-10 Score=90.02 Aligned_cols=48 Identities=19% Similarity=0.535 Sum_probs=42.2
Q ss_pred CCceeccCccccccC---cEEcC-CcccccHHhHHHHHHhCCCCCCCCCcCCC
Q 001349 161 PKDFVCPITTHIFDD---PVTLE-TGQTYERRAIQEWIERGNSSCPITRQKLS 209 (1094)
Q Consensus 161 ~~~~~CpIc~~~~~d---Pv~~~-cGhtfc~~ci~~~~~~~~~~CP~c~~~~~ 209 (1094)
.++..|+||++.|.+ ++.++ |||.||..||.+|+.. +..||.||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 447899999999998 78886 9999999999999987 568999998764
|
| >2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.4e-09 Score=92.24 Aligned_cols=50 Identities=22% Similarity=0.525 Sum_probs=42.6
Q ss_pred CCceeccCcccccc---CcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCC
Q 001349 161 PKDFVCPITTHIFD---DPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSST 211 (1094)
Q Consensus 161 ~~~~~CpIc~~~~~---dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~ 211 (1094)
..+..|+||++.|. ++++++|||.||+.||.+|+.. +..||.||+.+...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccCc
Confidence 34789999999885 4677999999999999999998 45799999988653
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.89 E-value=6.3e-09 Score=112.33 Aligned_cols=224 Identities=13% Similarity=0.145 Sum_probs=167.7
Q ss_pred hHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCC-ChHHHHHh--
Q 001349 318 FVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRP-STRTLIEM-- 390 (1094)
Q Consensus 318 ~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~-~~~~~~~~-- 390 (1094)
+++.| .|.+.+++..|...|.++.+.+...+..+.. .+.++.|+.+|+.+ ...|+.+|.+|.. .+++...+
T Consensus 17 ~~~~L-~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (252)
T 4db8_A 17 MTQQL-NSDDMQEQLSATRKFSQILSDGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 94 (252)
T ss_dssp HHHHH-HSSCSSHHHHHHHHHHHHHHHHHHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHH-cCCCHHHHHHHHHHHHHHHcCCCchHHHHHH-cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 44444 4578889999999998887776666777764 46899999999987 5678889999986 56555444
Q ss_pred -hhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccch-hhhccchhHHHHHHhhhcccHHHHHHHHHH
Q 001349 391 -DMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIA-NTIVSSKVFESVISSLEAEWAEERIAAVGI 468 (1094)
Q Consensus 391 -~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 468 (1094)
+.+|+|+.+|..++.. -+..|+..|.+| +.+..++ ..++..|+++.|++.++.++.+.+..|+.+
T Consensus 95 ~g~i~~L~~lL~~~~~~-------v~~~a~~~L~~l------~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~ 161 (252)
T 4db8_A 95 AGALPALVQLLSSPNEQ-------ILQEALWALSNI------ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 161 (252)
T ss_dssp TTHHHHHHHGGGCSCHH-------HHHHHHHHHHHH------TTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHcCCCHH-------HHHHHHHHHHHh------hcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHH
Confidence 3559999999885422 256677778777 3344555 788999999999999999999999999999
Q ss_pred HHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhh
Q 001349 469 LLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQT 548 (1094)
Q Consensus 469 l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~ 548 (1094)
|.++...+...+..+.+.+.++++++++.+.+...+..|+..|..+...+ ....+.+.+.|.+.. |+..++.
T Consensus 162 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-----~~~~~~~~~~g~i~~---L~~ll~~ 233 (252)
T 4db8_A 162 LSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-----NEQKQAVKEAGALEK---LEQLQSH 233 (252)
T ss_dssp HHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC-----HHHHHHHHHTTHHHH---HHTTTTC
T ss_pred HHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC-----HHHHHHHHHCCcHHH---HHHHhCC
Confidence 98888777788888999999999999999888888889999999997542 233344555665554 6666655
Q ss_pred cCCccchhHHHHHHhh
Q 001349 549 ANHDQCPVVAGLLLQL 564 (1094)
Q Consensus 549 ~~~~~~~~~a~~l~~l 564 (1094)
..++-+--++..|.+|
T Consensus 234 ~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 234 ENEKIQKEAQEALEKL 249 (252)
T ss_dssp SSSHHHHTHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHH
Confidence 5554444445444443
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.7e-08 Score=127.32 Aligned_cols=311 Identities=14% Similarity=0.051 Sum_probs=210.9
Q ss_pred HHHHHHhhhccccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccch
Q 001349 269 LKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSV 348 (1094)
Q Consensus 269 l~~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~ 348 (1094)
+..++..|...+....++.|+..+..++........+.. ..++..++++|- +.++.+++.|+.+|.++.......
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~----~g~I~~Lv~lL~-~~~~~v~~~A~~aL~nLa~~~~~~ 268 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFK----SGGIPALVNMLG-SPVDSVLFHAITTLHNLLLHQEGA 268 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHH----TTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHH----cCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCCChhh
Confidence 344444454443444466777777776654322122332 234555555554 457999999999999997665555
Q ss_pred hhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCC-ChHHHHHh---hhhHHHHHHHHhccccccccccCchhhHHH
Q 001349 349 IHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRP-STRTLIEM---DMMESLMTVIKKKEEDFLKMCLKPKSVSVL 420 (1094)
Q Consensus 349 ~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~-~~~~~~~~---~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~ 420 (1094)
+..+. ..+.++.|+.+|+.+ ...|+.+|..|.. .++++..+ +.++.|+.+|+.+.... ...++..
T Consensus 269 ~~~v~-~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~------~~~~a~~ 341 (780)
T 2z6g_A 269 KMAVR-LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK------LLWTTSR 341 (780)
T ss_dssp HHHHH-HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHH------HHHHHHH
T ss_pred HHHHH-HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHH------HHHHHHH
Confidence 55544 456899999999886 3345557777764 45555443 44599999998764221 1334555
Q ss_pred HHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcC
Q 001349 421 LLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAAS 500 (1094)
Q Consensus 421 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~ 500 (1094)
+|..| +....++..++..|+++.|+..+..++.+.+..|+.+|..+...... .......+++|+++|.+.+
T Consensus 342 aL~~L------s~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~---~~~~~~~i~~Lv~lL~~~d 412 (780)
T 2z6g_A 342 VLKVL------SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQLLGSDD 412 (780)
T ss_dssp HHHHH------HTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTT---CSCCHHHHHHHHHHTTCSC
T ss_pred HHHHh------hcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchh---hhhhhhHHHHHHHHHcCCC
Confidence 56655 33457888999999999999999999999999999988877655432 2223456789999999888
Q ss_pred CchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCC--ccchhHHHHHHhhhcccCCC----CCC
Q 001349 501 DGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANH--DQCPVVAGLLLQLDLLAEPR----KMS 574 (1094)
Q Consensus 501 ~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~--~~~~~~a~~l~~l~~~~~~~----~~~ 574 (1094)
...|..|+..|..|...+. ...+.+.+.|.+.. |+..|+.... +-+.-++..|..|-. ..+. +..
T Consensus 413 ~~vr~~A~~aL~~L~~~~~-----~~~~~i~~~g~i~~---Lv~lL~~~~~~~~v~~~Al~aL~nL~~-~~~~~~~~~~~ 483 (780)
T 2z6g_A 413 INVVTCAAGILSNLTCNNY-----KNKMMVCQVGGIEA---LVRTVLRAGDREDITEPAICALRHLTS-RHQDAEMAQNA 483 (780)
T ss_dssp HHHHHHHHHHHHHHTSSCH-----HHHHHHHTTTHHHH---HHHHHHHHTTCHHHHHHHHHHHHHTTS-SSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCH-----HHHHHHHHCCCHHH---HHHHHHccCCHHHHHHHHHHHHHHHHh-cCchHHHHHHH
Confidence 8889899999999866532 22344555665554 7777766432 556677888888743 2221 123
Q ss_pred ccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhccc
Q 001349 575 IYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 609 (1094)
Q Consensus 575 ~~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~g 609 (1094)
+...++++.|+..|..++...++..|+.+|.||+.
T Consensus 484 v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~ 518 (780)
T 2z6g_A 484 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 518 (780)
T ss_dssp HHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc
Confidence 33457799999999988777889999999999974
|
| >2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.88 E-value=9.3e-10 Score=98.84 Aligned_cols=49 Identities=16% Similarity=0.580 Sum_probs=43.3
Q ss_pred CCceeccCccccccC---cEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCC
Q 001349 161 PKDFVCPITTHIFDD---PVTLETGQTYERRAIQEWIERGNSSCPITRQKLSS 210 (1094)
Q Consensus 161 ~~~~~CpIc~~~~~d---Pv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~ 210 (1094)
.++..|+||++.|.+ +++++|||.||..||..|+.. +..||.||+.+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 347899999999988 888999999999999999986 5589999998764
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=98.87 E-value=4.4e-08 Score=115.24 Aligned_cols=318 Identities=13% Similarity=0.090 Sum_probs=218.1
Q ss_pred HHHHHHhhhccccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccch
Q 001349 269 LKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSV 348 (1094)
Q Consensus 269 l~~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~ 348 (1094)
+...+..+. ++....++.|+..++++..... ++.+......+.++..+++.|....+..++..+..+|.++...+...
T Consensus 22 l~~l~~~l~-s~~~~~r~~A~~~L~~l~~~~~-~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~ 99 (450)
T 2jdq_A 22 TSDMIEMIF-SKSPEQQLSATQKFRKLLSKEP-NPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQ 99 (450)
T ss_dssp CHHHHHHHH-SSCHHHHHHHHHHHHHHHHSSS-SCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCC-CCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 344455554 3344557788888888764222 11111112222556667777766558899999999999998766555
Q ss_pred hhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCCh-HHHHH---hhhhHHHHHHHHhccccccccccCchhhHHH
Q 001349 349 IHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPST-RTLIE---MDMMESLMTVIKKKEEDFLKMCLKPKSVSVL 420 (1094)
Q Consensus 349 ~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~-~~~~~---~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~ 420 (1094)
...+. ..+.++.|+.+|+.+ ...|+.+|.+|.... ..... -+.+|+|+.+|...... .-+..|+.
T Consensus 100 ~~~~~-~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~------~v~~~a~~ 172 (450)
T 2jdq_A 100 TRIVI-QAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRL------TMTRNAVW 172 (450)
T ss_dssp HHHHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCH------HHHHHHHH
T ss_pred HHHHH-hCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCH------HHHHHHHH
Confidence 55555 356899999999987 567888999996653 33332 35669999999853222 12456667
Q ss_pred HHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcC
Q 001349 421 LLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAAS 500 (1094)
Q Consensus 421 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~ 500 (1094)
.|.+|....+ +.....++ .++++.|+..+..++.+.+..++.+|..+.......+..+...+.+++++.++...+
T Consensus 173 ~L~~l~~~~~----~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~ 247 (450)
T 2jdq_A 173 ALSNLCRGKS----PPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHND 247 (450)
T ss_dssp HHHHHHCCSS----SCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSC
T ss_pred HHHHHhCCCC----CCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCc
Confidence 7777754331 12223333 789999999999999999999999888887766667778888899999999998888
Q ss_pred CchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHH
Q 001349 501 DGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEA 580 (1094)
Q Consensus 501 ~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea 580 (1094)
...+..|+..|..+.... ....+.+-+.|.+ ..|+.+|+...+.-+--++..|.+|..-.+.....+...+.
T Consensus 248 ~~v~~~a~~~L~~l~~~~-----~~~~~~~~~~~~l---~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~ 319 (450)
T 2jdq_A 248 YKVVSPALRAVGNIVTGD-----DIQTQVILNCSAL---QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANI 319 (450)
T ss_dssp HHHHHHHHHHHHHHTTSC-----HHHHHHHHTTTHH---HHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH
T ss_pred hhHHHHHHHHHHHHhhCC-----hHHHHHHHHCccH---HHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence 888888999999887652 1222333444544 45888888766666777888888876521111122334578
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHhccc
Q 001349 581 IDTLISCLRNSDYPAAQLAAAKTIVSLQG 609 (1094)
Q Consensus 581 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~g 609 (1094)
++.|+..|.++ .+.+|..|+.+|.++.-
T Consensus 320 l~~L~~~l~~~-~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 320 FPALISILQTA-EFRTRKEAAWAITNATS 347 (450)
T ss_dssp HHHHHHHHHHS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHHc
Confidence 89999999875 45789999999999863
|
| >1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-09 Score=94.56 Aligned_cols=48 Identities=19% Similarity=0.573 Sum_probs=42.9
Q ss_pred CceeccCccccccCc---EEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCC
Q 001349 162 KDFVCPITTHIFDDP---VTLETGQTYERRAIQEWIERGNSSCPITRQKLSS 210 (1094)
Q Consensus 162 ~~~~CpIc~~~~~dP---v~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~ 210 (1094)
++..|+||++.|.++ +.++|||.||+.||.+|+.. +..||.||+.+..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 378899999999988 77899999999999999987 4589999998765
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=1.5e-07 Score=107.34 Aligned_cols=244 Identities=9% Similarity=-0.033 Sum_probs=153.6
Q ss_pred eEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEe----------CCCcEEEEECCCCceEE-EEecccCccce
Q 001349 834 TIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGS----------LDKTARVWSIGNEEIHC-VQVHDIKDQIQ 902 (1094)
Q Consensus 834 ~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs----------~DgtI~vWdi~~~~~~~-~~~~~~~~~V~ 902 (1094)
+|.++|..++ +.+.++.....+ .+.|+|||++++++. .+++|.+||..+++... +........+
T Consensus 47 ~vsvID~~t~--~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~- 121 (368)
T 1mda_H 47 ENWVSCAGCG--VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS- 121 (368)
T ss_dssp EEEEEETTTT--EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC-
T ss_pred eEEEEECCCC--eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc-
Confidence 8889999999 778887655555 799999999998886 47899999999986322 2211000000
Q ss_pred eeeecCceEEEeeCCCeEEEEEeC--CeEEE--EcCCCCceEEEE--------e-CCEEEEEEcCCeEEEEECCC-----
Q 001349 903 NLAVSNSILCFIPQGAGIKVHLRN--GKTKL--LNSSKYPKCLAL--------V-QGKVYCGCQDGAIQEIDLAT----- 964 (1094)
Q Consensus 903 ~v~~~~~~~~fspdg~~l~~~~~~--g~i~l--~~~~~~v~~l~~--------s-~~~l~sgs~Dg~I~iwDl~~----- 964 (1094)
.-..+..+.|+|||+++.+.... ..+.+ +|... +..+.. . ...+++.+.||.+.+.|+.+
T Consensus 122 -~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 122 -VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp -BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred -cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 00124455699999999998763 56777 88755 444432 1 12356677889998899886
Q ss_pred CceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCe--EEEEecC--------C---CCEEEEEE
Q 001349 965 GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN--MVGSLPT--------L---SEVRAMVV 1031 (1094)
Q Consensus 965 ~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~--~~~~~~~--------~---~~v~~l~~ 1031 (1094)
++...... ..+.-...+. . .+++..++..+. + .+.+.|..+.. .+..+.. . .....+++
T Consensus 200 ~~v~~~~t--~~i~vg~~P~---~-~~~~~~~~~vs~-~-~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~ 271 (368)
T 1mda_H 200 GIVGAQCT--GAQNCSSQAA---Q-ANYPGMLVWAVA-S-SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAK 271 (368)
T ss_dssp EECCCCSC--TTSCBCSCCE---E-ETTTTEEEECBS-S-CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEE
T ss_pred CeEEEEee--eeeeCCCCcc---c-cccCCEEEEEcC-C-EEEEEECCCCcceEEEEEEeccccccccccccCcceeeEE
Confidence 33221000 0011112333 3 443333333333 4 79999986532 3332221 0 11112678
Q ss_pred eCC--EEEEEEc---------CCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCC-EEEEEe-CCCcEEEEeCC
Q 001349 1032 SSE--LVYLGCK---------GGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE-FLVIGT-SDGRIQAWGLS 1094 (1094)
Q Consensus 1032 spd--~l~sgs~---------dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~-~L~sgs-~DG~I~iWdls 1094 (1094)
++| .++++.. ++.+.+||..+++.+..+..+. ...+++|+|||+ .+++.. .+++|.+||+.
T Consensus 272 s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~ 345 (368)
T 1mda_H 272 LKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp ETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred cCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCCCCEEEEEccCCCCeEEEEECC
Confidence 887 5665432 2356699999999999886443 689999999997 566666 59999999973
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=98.86 E-value=2.6e-08 Score=120.21 Aligned_cols=313 Identities=11% Similarity=0.086 Sum_probs=215.3
Q ss_pred HHHHHHhhhccccchHhHHHHHHHHHHHHHh-ccc-hHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhccccc
Q 001349 269 LKHAITSLCMSEILNESEMAVLQIERCWLEA-SME-LDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDK 346 (1094)
Q Consensus 269 l~~~i~~L~~s~~l~~~e~a~~~i~~~~~~~-~~~-~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~ 346 (1094)
+..++..|.+. ....+..|+..++++.... +.+ ..+. ...++..++++|....++.++..|+.+|.++...+.
T Consensus 89 i~~lv~~L~s~-~~~~~~~A~~~L~~ll~~~~~~~~~~~~----~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~ 163 (530)
T 1wa5_B 89 LPQMTQQLNSD-DMQEQLSATVKFRQILSREHRPPIDVVI----QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS 163 (530)
T ss_dssp HHHHHHHHSCS-SHHHHHHHHHHHHHHTCCSSSCSHHHHH----HTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCCCccHHHHH----HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH
Confidence 44455555543 3455677877777775432 222 1222 223444455555554478999999999999987666
Q ss_pred chhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCC-hHHH---HHhhhhHHHHHHHHhccccccccccCchhhH
Q 001349 347 SVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPS-TRTL---IEMDMMESLMTVIKKKEEDFLKMCLKPKSVS 418 (1094)
Q Consensus 347 ~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~-~~~~---~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa 418 (1094)
.....+. ..+.++.|+.+|+.+ ...|+.+|.+|... +.+. ..-+.+|+|+.+|...+.. -...|
T Consensus 164 ~~~~~~~-~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~-------v~~~a 235 (530)
T 1wa5_B 164 AQTKVVV-DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS-------LIRTA 235 (530)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHH-------HHHHH
T ss_pred HHHHHHH-HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHH-------HHHHH
Confidence 5555555 357899999999987 56788899999654 3333 3335669999999873211 13556
Q ss_pred HHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHh
Q 001349 419 VLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMA 498 (1094)
Q Consensus 419 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~ 498 (1094)
+..|..|....+ .........++++.|+..+..++.+.+..|+.+|..+.......+..+.+.+.++.+++++..
T Consensus 236 ~~~L~~L~~~~~-----~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~ 310 (530)
T 1wa5_B 236 TWTLSNLCRGKK-----PQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH 310 (530)
T ss_dssp HHHHHHHHCCSS-----SCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred HHHHHHHhCCCC-----CCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC
Confidence 666777754321 222345567899999999999999999999998888876666677788888999999999998
Q ss_pred cCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHH
Q 001349 499 ASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYRE 578 (1094)
Q Consensus 499 ~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~re 578 (1094)
.+...+..|+..|..+..... ...+.+-+.|.++ .|+.+|+...++-+.-++..|.+|..-.......+...
T Consensus 311 ~~~~v~~~a~~~L~~l~~~~~-----~~~~~~~~~~~l~---~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~ 382 (530)
T 1wa5_B 311 ESTLVQTPALRAVGNIVTGND-----LQTQVVINAGVLP---ALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDA 382 (530)
T ss_dssp SCHHHHHHHHHHHHHHTTSCH-----HHHHHHHHTTHHH---HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHHHHcCCH-----HHHHHHHHcchHH---HHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 887888889999998876532 2223333445444 58888887766777788888888765211111223345
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHhcc
Q 001349 579 EAIDTLISCLRNSDYPAAQLAAAKTIVSLQ 608 (1094)
Q Consensus 579 ea~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 608 (1094)
+.++.|+..|.++ ...+|..|+.+|.++.
T Consensus 383 ~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~ 411 (530)
T 1wa5_B 383 NLIPPLVKLLEVA-EYKTKKEACWAISNAS 411 (530)
T ss_dssp TCHHHHHHHHHHS-CHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Confidence 7888999999765 4578999999999986
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.5e-08 Score=107.60 Aligned_cols=225 Identities=12% Similarity=0.170 Sum_probs=169.1
Q ss_pred HHHHhhhccccchHhHHHHHHHHHHHHHhccc-hHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchh
Q 001349 271 HAITSLCMSEILNESEMAVLQIERCWLEASME-LDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVI 349 (1094)
Q Consensus 271 ~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~-~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~ 349 (1094)
..+..|.+. ..+.+..|+..++.+....+++ ..+. ...++.-++++|-. .++.+++.++.+|.++...++.++
T Consensus 16 ~~~~~L~s~-~~~~~~~a~~~L~~~l~~~~~~~~~~~----~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~ 89 (252)
T 4db8_A 16 QMTQQLNSD-DMQEQLSATRKFSQILSDGNEQIQAVI----DAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQI 89 (252)
T ss_dssp HHHHHHHSS-CSSHHHHHHHHHHHHHHHHHHHHHHHH----HTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHcCC-CHHHHHHHHHHHHHHHcCCCchHHHHH----HcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHHH
Confidence 344445443 3355778888886655543333 2222 23344545555544 568999999999999987777777
Q ss_pred hhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCChHHH----HHhhhhHHHHHHHHhccccccccccCchhhHHHH
Q 001349 350 HTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTL----IEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLL 421 (1094)
Q Consensus 350 ~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~~~~----~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~ 421 (1094)
..+.. .+.++.|+.+|+.+ ...|+.+|.+|...+.+. ...+.+|.|+.+|..++.. -+..|+..
T Consensus 90 ~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~-------v~~~a~~~ 161 (252)
T 4db8_A 90 QAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-------ILQEALWA 161 (252)
T ss_dssp HHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHH-------HHHHHHHH
T ss_pred HHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHH-------HHHHHHHH
Confidence 77774 46899999999987 667888999998776654 3334569999999775322 14667777
Q ss_pred HHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCC
Q 001349 422 LGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASD 501 (1094)
Q Consensus 422 l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~ 501 (1094)
|.+|... +.++...++..|+++.|++.+..++.+-+..|+.+|.+++..+...+..+.+.+.++++++++++.+.
T Consensus 162 L~~l~~~-----~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~ 236 (252)
T 4db8_A 162 LSNIASG-----GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENE 236 (252)
T ss_dssp HHHHTTS-----CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSS
T ss_pred HHHHHcC-----ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCH
Confidence 8877433 24666778889999999999999999999999999998887778888899999999999999999988
Q ss_pred chhHHHHHHHHHH
Q 001349 502 GERFEIVCFLSEL 514 (1094)
Q Consensus 502 ~~~~~~~~~l~el 514 (1094)
..|..|...|..|
T Consensus 237 ~v~~~A~~~L~~l 249 (252)
T 4db8_A 237 KIQKEAQEALEKL 249 (252)
T ss_dssp HHHHTHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 8898888888766
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.4e-09 Score=124.94 Aligned_cols=204 Identities=14% Similarity=0.091 Sum_probs=115.4
Q ss_pred EeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCcc
Q 001349 821 CFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQ 900 (1094)
Q Consensus 821 fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~ 900 (1094)
...+.+++++.||.|+.||..+| +.+..+.. +.+.+..+..++..+++++.||.|+.||..+|+............
T Consensus 7 v~~~~v~~gs~dg~v~a~d~~tG--~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~ 82 (369)
T 2hz6_A 7 LPETLLFVSTLDGSLHAVSKRTG--SIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL 82 (369)
T ss_dssp -CTTEEEEEETTSEEEEEETTTC--CEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHH
T ss_pred eeCCEEEEEcCCCEEEEEECCCC--CEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccc
Confidence 34569999999999999999999 67777765 556666666778888888999999999998875322111111111
Q ss_pred ceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCC
Q 001349 901 IQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGK 980 (1094)
Q Consensus 901 V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h 980 (1094)
+.+. + ++. .++.+++|+.|+.|+.||..+|+....+.. +
T Consensus 83 ~~~s---p---~~~-----------------------------~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~------~ 121 (369)
T 2hz6_A 83 VQAS---P---CRS-----------------------------SDGILYMGKKQDIWYVIDLLTGEKQQTLSS------A 121 (369)
T ss_dssp HTTC---S---CC----------------------------------CCCCEEEEEEEEECCC-----------------
T ss_pred cccC---c---eEe-----------------------------cCCEEEEEeCCCEEEEEECCCCcEEEEecC------C
Confidence 1000 0 000 123477888899999999999988744322 1
Q ss_pred CCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeC-----CEEEEEEcCCeEEEEECCCCcE
Q 001349 981 ANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSS-----ELVYLGCKGGTVEIWDQKRQIR 1055 (1094)
Q Consensus 981 ~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~sp-----d~l~sgs~dg~I~vwd~~t~~~ 1055 (1094)
. ...++|++..++.++.|+ .|+.||..+|+.+..+.... .....+++ +.+++++.||.|+.||..+|+.
T Consensus 122 ~----~~~~~p~~~~v~~~~~dg-~v~a~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 122 F----ADSLSPSTSLLYLGRTEY-TITMYDTKTRELRWNATYFD-YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp ---------------EEEEEEEE-EEECCCSSSSSCCCEEEEEE-ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred C----cccccccCCEEEEEecCC-EEEEEECCCCCEEEeEeccc-ccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence 1 123345666666666675 99999999998776654211 12233444 4688899999999999999998
Q ss_pred EEEecccCCcceE-EEEEcCCCC
Q 001349 1056 IETLQTGTSGKVQ-CMALDDNEE 1077 (1094)
Q Consensus 1056 ~~~l~~~h~~~I~-~l~~Spdg~ 1077 (1094)
+..+. ...++. ...++++|.
T Consensus 196 ~W~~~--~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 196 LWIQN--YASPVVAFYVWQREGL 216 (369)
T ss_dssp EEEEE--CSSCEEEEEECTTSSC
T ss_pred EEEec--CCCceEEEEEecCCce
Confidence 88874 334443 345556664
|
| >4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.84 E-value=6.7e-10 Score=107.72 Aligned_cols=52 Identities=19% Similarity=0.531 Sum_probs=47.1
Q ss_pred CceeccCccccccCc-------EEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCC
Q 001349 162 KDFVCPITTHIFDDP-------VTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLP 214 (1094)
Q Consensus 162 ~~~~CpIc~~~~~dP-------v~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~ 214 (1094)
+++.||||++.|.+| ++++|||+||+.||.+|+.. ...||.||+.+....+.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~ 64 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYH 64 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEE
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcccccc
Confidence 389999999999999 99999999999999999987 45899999999877764
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.84 E-value=7.1e-07 Score=98.86 Aligned_cols=217 Identities=8% Similarity=0.043 Sum_probs=135.4
Q ss_pred CcEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEecc--cCCCeEEE
Q 001349 785 MVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIRE--HTKAVTGL 861 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~--H~~~V~sv 861 (1094)
+..+++...++.|..||..........+...+.+++++++ .++.+. ++.|.+||..++....+..... ....++.+
T Consensus 25 ~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di 103 (297)
T 3g4e_A 25 NSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDG 103 (297)
T ss_dssp TEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEE
T ss_pred CEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCE
Confidence 4566667778999999987433333345678999999987 444444 5789999999884333333221 12458899
Q ss_pred EEecCCCEEEEEeCC---------CcEEEEECCC-CceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEE
Q 001349 862 AILQSGEMLYSGSLD---------KTARVWSIGN-EEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL 931 (1094)
Q Consensus 862 ~fspdg~~LaSgs~D---------gtI~vWdi~~-~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l 931 (1094)
+++|+|+++++...+ ..-.+|.++. ++...+. .... .++.++|+|||+.+
T Consensus 104 ~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~--~~~~-------~pngi~~spdg~~l----------- 163 (297)
T 3g4e_A 104 KVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF--DQVD-------ISNGLDWSLDHKIF----------- 163 (297)
T ss_dssp EECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE--EEES-------BEEEEEECTTSCEE-----------
T ss_pred EECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEe--eccc-------cccceEEcCCCCEE-----------
Confidence 999999977765332 2345565543 2222111 1111 12344588887753
Q ss_pred EcCCCCceEEEEeCCEEEEEEcCCeEEEEEC--CCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEE
Q 001349 932 LNSSKYPKCLALVQGKVYCGCQDGAIQEIDL--ATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMW 1009 (1094)
Q Consensus 932 ~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl--~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iw 1009 (1094)
+++.+.++.|..||+ .++..... .....+..+......+++++++.+.++...+ +.|..|
T Consensus 164 ----------------yv~~~~~~~i~~~~~d~~~G~~~~~-~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~-~~v~~~ 225 (297)
T 3g4e_A 164 ----------------YYIDSLSYSVDAFDYDLQTGQISNR-RSVYKLEKEEQIPDGMCIDAEGKLWVACYNG-GRVIRL 225 (297)
T ss_dssp ----------------EEEEGGGTEEEEEEECTTTCCEEEE-EEEEECCGGGCEEEEEEEBTTSCEEEEEETT-TEEEEE
T ss_pred ----------------EEecCCCCcEEEEeccCCCCcccCc-EEEEECCCCCCCCCeeEECCCCCEEEEEcCC-CEEEEE
Confidence 334455678888876 45543210 0001122233467889999988777776555 489999
Q ss_pred ECCCCeEEEEecC-CCCEEEEEEe-CC--EEEEEE
Q 001349 1010 STSNYNMVGSLPT-LSEVRAMVVS-SE--LVYLGC 1040 (1094)
Q Consensus 1010 d~~~~~~~~~~~~-~~~v~~l~~s-pd--~l~sgs 1040 (1094)
|..+++.+..+.. ...+++++|. || .|++++
T Consensus 226 d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 226 DPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp CTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred cCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence 9999999888884 4789999998 55 455444
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.82 E-value=5e-06 Score=95.10 Aligned_cols=252 Identities=15% Similarity=0.169 Sum_probs=155.5
Q ss_pred EeCCEEEEEECCCeEEEEecCCCcceeEEEeccc---------CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEE
Q 001349 821 CFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREH---------TKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHC 891 (1094)
Q Consensus 821 fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H---------~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~ 891 (1094)
...+.++.++.+|.|..||..++ +.+..+... ...+.+. ...++..++.++.++.|..+|..+|+..-
T Consensus 51 v~~~~v~~~~~~g~v~a~d~~tG--~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W 127 (376)
T 3q7m_A 51 LADNVVYAADRAGLVKALNADDG--KEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAW 127 (376)
T ss_dssp EETTEEEEECTTSEEEEEETTTC--CEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEE
T ss_pred EECCEEEEEcCCCeEEEEEccCC--ceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEE
Confidence 35678999999999999999999 555555432 1223221 12246678889999999999999987432
Q ss_pred EEecccCcccee-eeecCceEEEeeCCCeEEEEEeCCeEEEEcCC-----------CCc------eEEEEeCCEEEEEEc
Q 001349 892 VQVHDIKDQIQN-LAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS-----------KYP------KCLALVQGKVYCGCQ 953 (1094)
Q Consensus 892 ~~~~~~~~~V~~-v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~-----------~~v------~~l~~s~~~l~sgs~ 953 (1094)
.... ...+.. .... +..+.+...++.+..++.. ..+ ......++.+++++.
T Consensus 128 ~~~~--~~~~~~~p~~~---------~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~ 196 (376)
T 3q7m_A 128 QTKV--AGEALSRPVVS---------DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGD 196 (376)
T ss_dssp EEEC--SSCCCSCCEEE---------TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCT
T ss_pred EEeC--CCceEcCCEEE---------CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcC
Confidence 2221 222211 1111 2233333334444443321 111 233345788999999
Q ss_pred CCeEEEEECCCCceeEEeccceeecCCC--CC---e-EEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEE
Q 001349 954 DGAIQEIDLATGTFATIQTGHRKLLGKA--NP---V-HALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVR 1027 (1094)
Q Consensus 954 Dg~I~iwDl~~~~~~~~~~~~~~~~~h~--~~---V-~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~ 1027 (1094)
++.+..+|..+|+........... +.. .. + ....+.. +. +..++.++ .+..+|..+++.+...... ...
T Consensus 197 ~g~l~~~d~~tG~~~w~~~~~~~~-~~~~~~~~~~~~~~p~~~~-~~-v~~~~~~g-~l~~~d~~tG~~~w~~~~~-~~~ 271 (376)
T 3q7m_A 197 NGRVSAVLMEQGQMIWQQRISQAT-GSTEIDRLSDVDTTPVVVN-GV-VFALAYNG-NLTALDLRSGQIMWKRELG-SVN 271 (376)
T ss_dssp TTEEEEEETTTCCEEEEEECCC------------CCCCCCEEET-TE-EEEECTTS-CEEEEETTTCCEEEEECCC-CEE
T ss_pred CCEEEEEECCCCcEEEEEecccCC-CCcccccccccCCCcEEEC-CE-EEEEecCc-EEEEEECCCCcEEeeccCC-CCC
Confidence 999999999999987544321100 000 00 0 1111222 33 33344555 8999999999988776633 356
Q ss_pred EEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1028 AMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1028 ~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
.+....+.+++++.++.|..+|..+++.+..........+...... +..|+.++.+|.|.+||.
T Consensus 272 ~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d~ 335 (376)
T 3q7m_A 272 DFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWINV 335 (376)
T ss_dssp EEEEETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEET
T ss_pred CceEECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEEC
Confidence 6777888999999999999999999998877742222233333332 567888999999999985
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=7.2e-07 Score=110.69 Aligned_cols=293 Identities=14% Similarity=0.100 Sum_probs=165.7
Q ss_pred CcEEEEeeCCCCeEEEeCCcceeec--ccCC-----------CcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEe
Q 001349 785 MVKVLSNGHDSSADFWNHRELVHVD--SSEN-----------GKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQI 851 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~~~~~~~--~~h~-----------~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l 851 (1094)
+..++.++.++.|.-+|..+..... .... .....+++..+.++.++.|+.|..+|..+| +.+..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG--~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATG--KEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTC--CEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCC--CEEeee
Confidence 5556666667888877765322221 1110 011245566779999999999999999999 677776
Q ss_pred ccc-C----CCeEE-EEEecCCCEEEEEeC------CCcEEEEECCCCceEEEEecccCccceeee-----------ec-
Q 001349 852 REH-T----KAVTG-LAILQSGEMLYSGSL------DKTARVWSIGNEEIHCVQVHDIKDQIQNLA-----------VS- 907 (1094)
Q Consensus 852 ~~H-~----~~V~s-v~fspdg~~LaSgs~------DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~-----------~~- 907 (1094)
..+ . ..+.+ ..+ .+..++.++. +|.|+.||..+|+..-........ ..... |.
T Consensus 155 ~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~-~~~~~~~~~~~~g~~~w~~ 231 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGD-PSKPFEDESMKRAARTWDP 231 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCC-TTSCCSSHHHHHHHTTSCG
T ss_pred cCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCC-ccccccccccccccccccc
Confidence 644 1 12221 111 2345555543 799999999999743222111100 00000 00
Q ss_pred -------------CceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccc
Q 001349 908 -------------NSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGH 974 (1094)
Q Consensus 908 -------------~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~ 974 (1094)
-....++|++..+.+...++.. |....... ...+.++ -++|..+|..+|+....+...
T Consensus 232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~--w~~~~~~~---~~gd~~~----~~sv~AlD~~TG~~~W~~~~~ 302 (677)
T 1kb0_A 232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSP--WSHKVRSP---KGGDNLY----LASIVALDPDTGKYKWHYQET 302 (677)
T ss_dssp GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEES--SCHHHHST---TCCCCTT----TTEEEEECTTTCCEEEEEESS
T ss_pred cCceeEeCCCcccccceeEcCCCCEEEEECCCCcc--ccCCCCCc---cCCCCee----eEEEEEEECCCCCEEEEEecC
Confidence 0112344444443333222211 11000000 0000000 025999999999988654321
Q ss_pred ee-ec--CCCCCeEEEEEeCCc---cEEEEEECCCCEEEEEECCCCeEEEEecCC--CC----------E----------
Q 001349 975 RK-LL--GKANPVHALQVHNGL---VYTASTSLDGAAVKMWSTSNYNMVGSLPTL--SE----------V---------- 1026 (1094)
Q Consensus 975 ~~-~~--~h~~~V~sl~fs~~~---~~las~s~Dg~~I~iwd~~~~~~~~~~~~~--~~----------v---------- 1026 (1094)
.. .. ........+....++ ..++.++.+| .+.++|..+|+.+..+... .. +
T Consensus 303 ~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G-~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~ 381 (677)
T 1kb0_A 303 PGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNG-FFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSK 381 (677)
T ss_dssp TTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTS-EEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTS
T ss_pred CCcccccccCCCcEEEecccCCcEeeEEEEECCCC-EEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCC
Confidence 00 00 001122223333355 5677777776 9999999999998776521 10 1
Q ss_pred --------------EEEEEeCC--EEEEEEc-------------------------------------------CCeEEE
Q 001349 1027 --------------RAMVVSSE--LVYLGCK-------------------------------------------GGTVEI 1047 (1094)
Q Consensus 1027 --------------~~l~~spd--~l~sgs~-------------------------------------------dg~I~v 1047 (1094)
..++++|+ .+++... .|.|..
T Consensus 382 ~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A 461 (677)
T 1kb0_A 382 PQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLA 461 (677)
T ss_dssp CEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEE
T ss_pred ccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEE
Confidence 14678886 6666433 278999
Q ss_pred EECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1048 WDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1048 wd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
||+.+++.+..+. +...+.+..++.++.++++++.||.+++||..
T Consensus 462 ~D~~tG~~~W~~~--~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~ 506 (677)
T 1kb0_A 462 WDPVAQKAAWSVE--HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAA 506 (677)
T ss_dssp EETTTTEEEEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred EeCCCCcEEeecC--CCCCCcCcceEeCCCEEEEECCCCcEEEEECC
Confidence 9999999988885 34455666677888899999999999999963
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.8e-07 Score=106.09 Aligned_cols=241 Identities=9% Similarity=0.015 Sum_probs=138.9
Q ss_pred CcEEEEEEeCC--EEEEEE--CCCeEEEEecCCCcceeEEEe-------cccCCCeEEEEEecCCCEEEEEeC-----CC
Q 001349 814 GKVLSIACFRD--KIFSGH--SDGTIKVWTGRGSILHLIQQI-------REHTKAVTGLAILQSGEMLYSGSL-----DK 877 (1094)
Q Consensus 814 ~~V~~l~fspd--~LaSgs--~Dg~I~vWd~~t~~~~~~~~l-------~~H~~~V~sv~fspdg~~LaSgs~-----Dg 877 (1094)
..+..++++++ ++++.. .+|.++||.+.++ + +..+ .+|-..+..++|+++|+++++-.. ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g--~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD--G-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT--E-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC--C-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCC
Confidence 67899999986 555643 2454666766555 2 2322 235568999999999887666544 57
Q ss_pred cEEEEECCCCceE-EEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEE---c
Q 001349 878 TARVWSIGNEEIH-CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGC---Q 953 (1094)
Q Consensus 878 tI~vWdi~~~~~~-~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs---~ 953 (1094)
.|.+||..+++.. .+.... .+..-......+++++++..+. ++.. .
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~---~~~~~~~~~~~v~vd~~~g~~y---------------------------vtd~~~~~ 143 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPP---PITLSNSFVNDLAVDLIHNFVY---------------------------ISDPAPDD 143 (343)
T ss_dssp EEEEEETTTTEEEEEEECCT---TTSCTTCCCCEEEEETTTTEEE---------------------------EEECCSGG
T ss_pred eEEEEECCCCeEEEEEECCh---hhcccccccceEEEecCCCEEE---------------------------EEcCccCC
Confidence 8999999988632 222111 0000000112233555433321 2222 3
Q ss_pred CCeEEEEECCCCceeEEeccce---------eecC--------------CCCCeEEEEEeCCccEEEEEECCCCEEEEEE
Q 001349 954 DGAIQEIDLATGTFATIQTGHR---------KLLG--------------KANPVHALQVHNGLVYTASTSLDGAAVKMWS 1010 (1094)
Q Consensus 954 Dg~I~iwDl~~~~~~~~~~~~~---------~~~~--------------h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd 1010 (1094)
++.|.+||+.+++.......+. ...+ ....+..++|++++..+..+..++..+..++
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~ 223 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK 223 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence 5666667766665443322100 0000 0124688999999988777777765665555
Q ss_pred CC---CCe--------EEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCC
Q 001349 1011 TS---NYN--------MVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE 1077 (1094)
Q Consensus 1011 ~~---~~~--------~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~ 1077 (1094)
.. .+. .+....+......++++++ ++++...++.|.+||..+++........+...+++++|.++|.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~ 303 (343)
T 2qe8_A 224 SADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGY 303 (343)
T ss_dssp HHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSC
T ss_pred HHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCc
Confidence 32 111 0111112234567889887 5556667899999998666643333222345689999999999
Q ss_pred EEEEEeCCCc
Q 001349 1078 FLVIGTSDGR 1087 (1094)
Q Consensus 1078 ~L~sgs~DG~ 1087 (1094)
++++.+..+.
T Consensus 304 l~v~~~~~~~ 313 (343)
T 2qe8_A 304 LYFDCNQLHH 313 (343)
T ss_dssp EEEEECCGGG
T ss_pred EEEEeCcccc
Confidence 8888775443
|
| >1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=2.5e-09 Score=100.66 Aligned_cols=49 Identities=10% Similarity=0.182 Sum_probs=41.9
Q ss_pred ceeccCccccccCcE------------------EcCCcccccHHhHHHHHHh----CCCCCCCCCcCCCCC
Q 001349 163 DFVCPITTHIFDDPV------------------TLETGQTYERRAIQEWIER----GNSSCPITRQKLSST 211 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv------------------~~~cGhtfc~~ci~~~~~~----~~~~CP~c~~~~~~~ 211 (1094)
+..||||++.|.+|+ +++|||.||+.||..|+.. .+..||.||+.+...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 668999999998876 7899999999999999963 345799999987644
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=2.9e-07 Score=104.99 Aligned_cols=272 Identities=8% Similarity=-0.046 Sum_probs=163.1
Q ss_pred EEEEeeCCC----CeEEEeCCc--ceeecccCCCcEEEEEEeCC--EEEEEE----------CCCeEEEEecCCCcceeE
Q 001349 787 KVLSNGHDS----SADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGH----------SDGTIKVWTGRGSILHLI 848 (1094)
Q Consensus 787 ~l~s~s~dg----~I~vWd~~~--~~~~~~~h~~~V~~l~fspd--~LaSgs----------~Dg~I~vWd~~t~~~~~~ 848 (1094)
.+++...++ +|.+.|..+ .+..+.....+ .+.|+|| +++.+. .+++|.+||..++ +.+
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~--~vv 109 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF--LPI 109 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC--CEE
T ss_pred EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC--CEE
Confidence 445555455 677999873 33333333344 7999997 555554 4789999999999 677
Q ss_pred EEeccc-------CCCeEEEEEecCCCEEEEEeC--CCcEEE--EECCCCceEEEEecccCccceeeeecC--ceEEEee
Q 001349 849 QQIREH-------TKAVTGLAILQSGEMLYSGSL--DKTARV--WSIGNEEIHCVQVHDIKDQIQNLAVSN--SILCFIP 915 (1094)
Q Consensus 849 ~~l~~H-------~~~V~sv~fspdg~~LaSgs~--DgtI~v--Wdi~~~~~~~~~~~~~~~~V~~v~~~~--~~~~fsp 915 (1094)
.++.-+ ......++|+|||++++++.. +..|.+ ||..+ ...+... ..+ .+...+ ....+++
T Consensus 110 ~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~v~---~~~-~~~p~g~~~~~~~~~ 183 (368)
T 1mda_H 110 ADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTKSA---SCF-HIHPGAAATHYLGSC 183 (368)
T ss_dssp EEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEECS---SCC-CCEEEETTEEECCCC
T ss_pred EEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEEECC---Cce-EEccCCCeEEEEEcC
Confidence 777533 123567999999999998874 467888 99876 2333221 110 010000 0123556
Q ss_pred CCCeEEEEEeC-----CeEEE-----EcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeec-----CC
Q 001349 916 QGAGIKVHLRN-----GKTKL-----LNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLL-----GK 980 (1094)
Q Consensus 916 dg~~l~~~~~~-----g~i~l-----~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~-----~h 980 (1094)
+|+.+.+.... +.+.. +........ ...++.++..+. +.|.+.|..++....... ..+. .+
T Consensus 184 dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~--~~~~~~~~~~~ 259 (368)
T 1mda_H 184 PASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQ-ANYPGMLVWAVA-SSILQGDIPAAGATMKAA--IDGNESGRKAD 259 (368)
T ss_dssp TTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEE-ETTTTEEEECBS-SCCEEEECCSSCCEEECC--CCSSCTHHHHT
T ss_pred CCCEEEEECccccccCCeEEEEeeeeeeCCCCccc-cccCCEEEEEcC-CEEEEEECCCCcceEEEE--EEecccccccc
Confidence 66655544332 22211 111112221 222456666666 999999987543211100 0000 00
Q ss_pred ---CCCeEEEEEeCCccEEEEEEC-C-C------CEEEEEECCCCeEEEEecCCCCEEEEEEeCC---EEEEEE-cCCeE
Q 001349 981 ---ANPVHALQVHNGLVYTASTSL-D-G------AAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE---LVYLGC-KGGTV 1045 (1094)
Q Consensus 981 ---~~~V~sl~fs~~~~~las~s~-D-g------~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd---~l~sgs-~dg~I 1045 (1094)
......+.+++++..+..+.. . + ..+.+||+.+++.+.++..+....+++|++| .+++.. .++.|
T Consensus 260 ~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~V 339 (368)
T 1mda_H 260 NFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVL 339 (368)
T ss_dssp TEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEE
T ss_pred ccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeE
Confidence 011122678988765554322 1 1 2566999999999999886668999999998 455566 59999
Q ss_pred EEEECCCCcEEEEecccCCcceEEEEEcC
Q 001349 1046 EIWDQKRQIRIETLQTGTSGKVQCMALDD 1074 (1094)
Q Consensus 1046 ~vwd~~t~~~~~~l~~~h~~~I~~l~~Sp 1074 (1094)
.|+|+.+++.+.++..+ ...+.+++.+
T Consensus 340 sVID~~t~kvv~~I~vg--~~P~~i~~~~ 366 (368)
T 1mda_H 340 DIYDAASDQDQSSVELD--KGPESLSVQN 366 (368)
T ss_dssp EEEESSSCEEEEECCCC--SCCCEEECCC
T ss_pred EEEECCCCcEEEEEECC--CCCCEEEeec
Confidence 99999999999999633 2456666643
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=98.77 E-value=4.8e-08 Score=102.24 Aligned_cols=181 Identities=13% Similarity=0.159 Sum_probs=148.1
Q ss_pred hhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCC-ChHHHHHh---hh
Q 001349 321 ILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRP-STRTLIEM---DM 392 (1094)
Q Consensus 321 ~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~-~~~~~~~~---~~ 392 (1094)
.|+.+.+..+++.|...|.++...++..+..+... +.++.|+.+|+.+ ...|+.+|.+|.. .+.++..+ +.
T Consensus 19 ~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~ 97 (210)
T 4db6_A 19 QQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 97 (210)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTC
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCC
Confidence 35567899999999999999977777777777754 6899999999987 5678889999974 55554443 45
Q ss_pred hHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHH
Q 001349 393 MESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRC 472 (1094)
Q Consensus 393 ~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~ 472 (1094)
+|+|+.+|..++.. -+..|...|.+|.. .+.++...++..|+++.|++.++.++.+-+..|+.+|..+
T Consensus 98 i~~L~~lL~~~~~~-------v~~~a~~~L~~l~~-----~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 165 (210)
T 4db6_A 98 LPALVQLLSSPNEQ-------ILQEALWALSNIAS-----GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165 (210)
T ss_dssp HHHHHHHTTCSCHH-------HHHHHHHHHHHHTT-----SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHH-------HHHHHHHHHHHHHc-----CCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 69999999876422 14567777887743 2345667888999999999999999999999999999999
Q ss_pred hhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHH
Q 001349 473 MQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSEL 514 (1094)
Q Consensus 473 ~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el 514 (1094)
+..+...+..+.+.+.++++++++.+.+...|..|..+|..|
T Consensus 166 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 166 ASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207 (210)
T ss_dssp HTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 888788899999999999999999988888898888888776
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=2e-06 Score=96.71 Aligned_cols=218 Identities=10% Similarity=0.020 Sum_probs=131.4
Q ss_pred ccccc-CcEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEecc--cC
Q 001349 780 PLAFE-MVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIRE--HT 855 (1094)
Q Consensus 780 ~~~~d-~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~--H~ 855 (1094)
.+.++ +..+++...++.|..||..........+...+.+++|+++ .++.++.+ .|.+||..++....+..... ..
T Consensus 55 ~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~ 133 (326)
T 2ghs_A 55 TFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPG 133 (326)
T ss_dssp EEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTT
T ss_pred eEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEEeeCCCCCCC
Confidence 34454 4456666678899999987432222234568999999986 55555554 49999998884333322211 12
Q ss_pred CCeEEEEEecCCCEEEEEeCC------CcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeE
Q 001349 856 KAVTGLAILQSGEMLYSGSLD------KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKT 929 (1094)
Q Consensus 856 ~~V~sv~fspdg~~LaSgs~D------gtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i 929 (1094)
..++.+.++|+|+++++...+ +.|..++ +++...+.. ...... .++|+|+|+.+
T Consensus 134 ~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~--~~~~~~-------~i~~s~dg~~l--------- 193 (326)
T 2ghs_A 134 NRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA--DISIPN-------SICFSPDGTTG--------- 193 (326)
T ss_dssp EEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE--EESSEE-------EEEECTTSCEE---------
T ss_pred CCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC--CCcccC-------CeEEcCCCCEE---------
Confidence 468999999999977765432 3444445 444322211 111122 33477877653
Q ss_pred EEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECC--CC-cee--EEeccceeecCCCCCeEEEEEeCCccEEEEEECCCC
Q 001349 930 KLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA--TG-TFA--TIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGA 1004 (1094)
Q Consensus 930 ~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~--~~-~~~--~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~ 1004 (1094)
+++.+.++.|.+||+. ++ ... ..+ ..+......+..+.+++++.+.++...++
T Consensus 194 ------------------yv~~~~~~~I~~~d~~~~~Gl~~~~~~~~---~~~~~~~~~p~gi~~d~~G~lwva~~~~~- 251 (326)
T 2ghs_A 194 ------------------YFVDTKVNRLMRVPLDARTGLPTGKAEVF---IDSTGIKGGMDGSVCDAEGHIWNARWGEG- 251 (326)
T ss_dssp ------------------EEEETTTCEEEEEEBCTTTCCBSSCCEEE---EECTTSSSEEEEEEECTTSCEEEEEETTT-
T ss_pred ------------------EEEECCCCEEEEEEcccccCCcccCceEE---EECCCCCCCCCeeEECCCCCEEEEEeCCC-
Confidence 2333456788888875 55 321 011 11122334567899998887776665444
Q ss_pred EEEEEECCCCeEEEEec-CCCCEEEEEEe-CC--EEEEEEc
Q 001349 1005 AVKMWSTSNYNMVGSLP-TLSEVRAMVVS-SE--LVYLGCK 1041 (1094)
Q Consensus 1005 ~I~iwd~~~~~~~~~~~-~~~~v~~l~~s-pd--~l~sgs~ 1041 (1094)
.|..||. +++.+..+. +...+++++|+ ++ .+++++.
T Consensus 252 ~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 252 AVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred EEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence 8999998 677777776 44579999998 65 5555543
|
| >4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.3e-09 Score=93.63 Aligned_cols=43 Identities=14% Similarity=0.230 Sum_probs=39.8
Q ss_pred ceeccCccccccCcEEcCCccc-ccHHhHHHHHHhCCCCCCCCCcCCCC
Q 001349 163 DFVCPITTHIFDDPVTLETGQT-YERRAIQEWIERGNSSCPITRQKLSS 210 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~~cGht-fc~~ci~~~~~~~~~~CP~c~~~~~~ 210 (1094)
++.|+||++.+.+||+++|||+ ||+.|+..| ..||.||+.+..
T Consensus 24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 7899999999999999999999 999999988 579999998764
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.6e-06 Score=100.82 Aligned_cols=236 Identities=9% Similarity=0.050 Sum_probs=138.5
Q ss_pred ccccccCcEEEEeeCCCCeEEEeCCc-ceeecccCCCcEEEEEEeCC--EEEEEECCC--eEEEEecCCCcceeEEEe--
Q 001349 779 SPLAFEMVKVLSNGHDSSADFWNHRE-LVHVDSSENGKVLSIACFRD--KIFSGHSDG--TIKVWTGRGSILHLIQQI-- 851 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~dg~I~vWd~~~-~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg--~I~vWd~~t~~~~~~~~l-- 851 (1094)
..+.+++..+++...++.|++||... ....+........ ++|+++ .|++++.++ .|.+||..++. ....+
T Consensus 136 la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~--~~~~~g~ 212 (409)
T 3hrp_A 136 IAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW--APTRIGQ 212 (409)
T ss_dssp EEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT--CEEEEEE
T ss_pred EEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCc--eeEEeee
Confidence 33456777777777789999999873 2222222233333 899986 788888766 79999987663 22333
Q ss_pred --cccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCc-eEEEeeCCCeEEEEEeCCe
Q 001349 852 --REHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNS-ILCFIPQGAGIKVHLRNGK 928 (1094)
Q Consensus 852 --~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~-~~~fspdg~~l~~~~~~g~ 928 (1094)
..+...+++++++|++..|+.+..++.|+.||..++....+........ ..+.|. .++|+|++..+.
T Consensus 213 ~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~---~~~~P~~~ia~~p~~g~ly------- 282 (409)
T 3hrp_A 213 LGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGS---LGTNPGPYLIYYFVDSNFY------- 282 (409)
T ss_dssp CCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSC---CCCSSCCEEEEETTTTEEE-------
T ss_pred ccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCC---CCCCccccEEEeCCCCEEE-------
Confidence 2255678899999955556667778999999998875433322111110 001111 444777543322
Q ss_pred EEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccce---------eecCCCCCeEEEEEeCCccEEEEE
Q 001349 929 TKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHR---------KLLGKANPVHALQVHNGLVYTAST 999 (1094)
Q Consensus 929 i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~---------~~~~h~~~V~sl~fs~~~~~las~ 999 (1094)
++-..++.|+.||.... .. .+.+.. .....-.....+++++++.+.++-
T Consensus 283 --------------------v~d~~~~~I~~~~~~g~-~~-~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad 340 (409)
T 3hrp_A 283 --------------------MSDQNLSSVYKITPDGE-CE-WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVD 340 (409)
T ss_dssp --------------------EEETTTTEEEEECTTCC-EE-EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEE
T ss_pred --------------------EEeCCCCEEEEEecCCC-EE-EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEe
Confidence 22233455555554422 11 110000 000112357899999999866665
Q ss_pred E-CCCCEEEEEECCCCeEEEEecC---------------CCCEEEEEEeCC-EE-EEEEcCCeEEEEEC
Q 001349 1000 S-LDGAAVKMWSTSNYNMVGSLPT---------------LSEVRAMVVSSE-LV-YLGCKGGTVEIWDQ 1050 (1094)
Q Consensus 1000 s-~Dg~~I~iwd~~~~~~~~~~~~---------------~~~v~~l~~spd-~l-~sgs~dg~I~vwd~ 1050 (1094)
+ .+ +.|+.||..++.......+ -.....++++++ .+ ++-..++.|+.+++
T Consensus 341 ~~~~-~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 341 GFKG-YCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTTT-CEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCC-CEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 5 44 5999999878765433322 145889999986 44 44455677877764
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.75 E-value=6.4e-06 Score=94.43 Aligned_cols=240 Identities=7% Similarity=-0.044 Sum_probs=147.5
Q ss_pred cccccccCcEEEEee----------CCCCeEEEeCCcce--eec-cc------CCCcEEEEEEeCC--EEEEEEC--CCe
Q 001349 778 YSPLAFEMVKVLSNG----------HDSSADFWNHRELV--HVD-SS------ENGKVLSIACFRD--KIFSGHS--DGT 834 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s----------~dg~I~vWd~~~~~--~~~-~~------h~~~V~~l~fspd--~LaSgs~--Dg~ 834 (1094)
...+++|+++++.+. .++.|.+||..+.. ... .+ +......+.|+|| +|+.+.. +++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 566788999887775 36789999987322 211 11 1133568999997 7777663 588
Q ss_pred EEEEecCCCcceeEEE-ecccCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCceEEEEec----ccCccceeeeecC
Q 001349 835 IKVWTGRGSILHLIQQ-IREHTKAVTGLAILQSG-EMLYSGSLDKTARVWSIGNEEIHCVQVH----DIKDQIQNLAVSN 908 (1094)
Q Consensus 835 I~vWd~~t~~~~~~~~-l~~H~~~V~sv~fspdg-~~LaSgs~DgtI~vWdi~~~~~~~~~~~----~~~~~V~~v~~~~ 908 (1094)
|.++| .++ +.+.+ +.- .+ ++.+.|++ ..+++.+.||++.+||. +++....... ....++..
T Consensus 150 v~viD-~t~--~~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~----- 216 (373)
T 2mad_H 150 VGLVV-QGG--SSDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLT----- 216 (373)
T ss_pred EEEEE-CCC--CEEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceee-----
Confidence 99999 988 56666 532 22 24555654 46677788999999999 7653211100 00011000
Q ss_pred ceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEE--eccc----eeecCCCC
Q 001349 909 SILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATI--QTGH----RKLLGKAN 982 (1094)
Q Consensus 909 ~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~--~~~~----~~~~~h~~ 982 (1094)
...|.+++.. ++..+.++.+.+.|+.++..... +... ....-...
T Consensus 217 -~~~~~~~~~~----------------------------~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~ 267 (373)
T 2mad_H 217 -QPAQANKSGR----------------------------IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPG 267 (373)
T ss_pred -cceeEecCCE----------------------------EEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecC
Confidence 0113333332 33333566777777765432111 0000 00000112
Q ss_pred CeEEEEEeCCccEEEEEECC---------CCEEEEEECCCCeEEEEecCCCCEEEEEEeCC---EEEEEE-cCCeEEEEE
Q 001349 983 PVHALQVHNGLVYTASTSLD---------GAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE---LVYLGC-KGGTVEIWD 1049 (1094)
Q Consensus 983 ~V~sl~fs~~~~~las~s~D---------g~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd---~l~sgs-~dg~I~vwd 1049 (1094)
....+.+++++..+.....+ ++.|.++|..+++.+.++.......+++|+|| .++++. .++.|.|||
T Consensus 268 g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD 347 (373)
T 2mad_H 268 GWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYD 347 (373)
T ss_pred ceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEE
Confidence 24457788877655554321 24899999999999999987778999999998 567766 589999999
Q ss_pred CCCCcEEEEe
Q 001349 1050 QKRQIRIETL 1059 (1094)
Q Consensus 1050 ~~t~~~~~~l 1059 (1094)
..+++.+..+
T Consensus 348 ~~t~~vv~~i 357 (373)
T 2mad_H 348 AGAGDQDQST 357 (373)
T ss_pred CCCCCEEeee
Confidence 9999999884
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=2e-05 Score=85.44 Aligned_cols=246 Identities=10% Similarity=0.010 Sum_probs=147.6
Q ss_pred EEEEeeCCCCeEEEeCCcce-------eecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEecccCC
Q 001349 787 KVLSNGHDSSADFWNHRELV-------HVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTK 856 (1094)
Q Consensus 787 ~l~s~s~dg~I~vWd~~~~~-------~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~ 856 (1094)
+|+.+.. +.|+.++..... ..+......+.+++|+++ ++++-..++.|.++|..++. ....+.....
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~--~~~~~~~~~~ 79 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE--PTTIIRQDLG 79 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC--CEEEECTTCC
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC--cEEEEECCCC
Confidence 3444433 467777765211 112222345789999973 44455567899999998763 2223333335
Q ss_pred CeEEEEEecCCCEEE-EEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC
Q 001349 857 AVTGLAILQSGEMLY-SGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS 935 (1094)
Q Consensus 857 ~V~sv~fspdg~~La-Sgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~ 935 (1094)
....+++++++..|+ +-...+.|.+++.+......+.... ... +..++++|++..
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~-~~~-------P~~i~vd~~~g~---------------- 135 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG-LVN-------PRGIVTDPVRGN---------------- 135 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-CSS-------EEEEEEETTTTE----------------
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECC-CCC-------ccEEEEeeCCCE----------------
Confidence 678999999765555 4455678999998764322221111 011 122336664443
Q ss_pred CCceEEEEeCCEEEEEEc---CCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECC
Q 001349 936 KYPKCLALVQGKVYCGCQ---DGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS 1012 (1094)
Q Consensus 936 ~~v~~l~~s~~~l~sgs~---Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~ 1012 (1094)
++.+.. .+.|..+++...... .. ..........+++++++..+..+....+.|..+|..
T Consensus 136 ------------lyv~~~~~~~~~I~~~~~dg~~~~-~~-----~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~ 197 (267)
T 1npe_A 136 ------------LYWTDWNRDNPKIETSHMDGTNRR-IL-----AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA 197 (267)
T ss_dssp ------------EEEEECCSSSCEEEEEETTSCCCE-EE-----ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred ------------EEEEECCCCCcEEEEEecCCCCcE-EE-----EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecC
Confidence 333332 256666766532221 11 011224578899998765554444444599999997
Q ss_pred CCeEEEEecCCCCEEEEEEeCCEEEEEE-cCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCC
Q 001349 1013 NYNMVGSLPTLSEVRAMVVSSELVYLGC-KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE 1077 (1094)
Q Consensus 1013 ~~~~~~~~~~~~~v~~l~~spd~l~sgs-~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~ 1077 (1094)
.......+........+++..+.++.+. .++.|.++|..+++.+..+..+.......+++.|++.
T Consensus 198 g~~~~~~~~~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 198 QPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CCceEEEecCCCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 6544444444455678888877766666 4689999999999999988644333578888988874
|
| >2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=6.7e-09 Score=116.10 Aligned_cols=50 Identities=20% Similarity=0.351 Sum_probs=44.9
Q ss_pred ceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCC
Q 001349 163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTK 212 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~ 212 (1094)
...|+||++.+.+||+++|||.||..||..|+......||.||+.+....
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 47999999999999999999999999999999855678999999887543
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=98.67 E-value=4.2e-08 Score=102.65 Aligned_cols=195 Identities=12% Similarity=0.138 Sum_probs=152.6
Q ss_pred HHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHh
Q 001349 394 ESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCM 473 (1094)
Q Consensus 394 ~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~ 473 (1094)
|+|+.+|.+.+.. -+..|...|..|.. .+.+++..+++.|+++.|++.|+.++.+.+..|+.+|.++.
T Consensus 15 ~~l~~LL~s~~~~-------v~~~a~~~L~~l~~-----~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 82 (210)
T 4db6_A 15 PQMVQQLNSPDQQ-------ELQSALRKLSQIAS-----GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 82 (210)
T ss_dssp HHHHHHTTCSCHH-------HHHHHHHHHHHHHT-----SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCHH-------HHHHHHHHHHHHHc-----CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 6777777654322 14556666776632 34577888999999999999999999999999999998888
Q ss_pred hccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCcc
Q 001349 474 QEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQ 553 (1094)
Q Consensus 474 ~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~ 553 (1094)
..+...+..+.+.+.+++++.+|.+.+...+..|...|..+...+ ....+.+-+.|.++. |+.+|+...++-
T Consensus 83 ~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-----~~~~~~~~~~~~i~~---L~~ll~~~~~~v 154 (210)
T 4db6_A 83 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-----NEQIQAVIDAGALPA---LVQLLSSPNEQI 154 (210)
T ss_dssp TSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-----HHHHHHHHHTTHHHH---HHHHTTCSCHHH
T ss_pred cCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCC-----HHHHHHHHHcCcHHH---HHHHHcCCCHHH
Confidence 788889999999999999999999998888999999999987642 223344455665555 888888877777
Q ss_pred chhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhccc
Q 001349 554 CPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 609 (1094)
Q Consensus 554 ~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~g 609 (1094)
+.-++..|.+|-.-.+..+..+...++++.|+..+.+ ....+|..|+.+|.+|+.
T Consensus 155 ~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 155 LQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH-ENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHhc
Confidence 8888899999877434455556677899999999985 456789999999999874
|
| >1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=2.9e-09 Score=96.28 Aligned_cols=65 Identities=12% Similarity=0.275 Sum_probs=50.7
Q ss_pred ceeccCccccccCcEEc---CCcccccHHhHHHHHHh----CC---CCCCC--CCcC--CCCCCCCChhHHHHHHHHHHH
Q 001349 163 DFVCPITTHIFDDPVTL---ETGQTYERRAIQEWIER----GN---SSCPI--TRQK--LSSTKLPKTNYVLKRLIASWQ 228 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~---~cGhtfc~~ci~~~~~~----~~---~~CP~--c~~~--~~~~~~~~pN~~l~~~i~~~~ 228 (1094)
.+.||||++.+.+|+++ +|||+||+.|+..++.. +. ..||. |+.. ++...+ .+....+++++|.
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i--~~ll~~~~~~ky~ 82 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI--ECMVAAEIMQRYK 82 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH--HHHSCHHHHHHHH
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH--HHHCCHHHHHHHH
Confidence 78999999999999875 79999999999998873 22 35999 9988 554433 3555567777777
Q ss_pred H
Q 001349 229 E 229 (1094)
Q Consensus 229 ~ 229 (1094)
+
T Consensus 83 ~ 83 (94)
T 1wim_A 83 K 83 (94)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=8.7e-07 Score=110.58 Aligned_cols=235 Identities=13% Similarity=0.112 Sum_probs=139.7
Q ss_pred cccccccCcEEEEe-----eCCCCeEEEeCCcceeecccCCCc--EEEEEEeCC--EEEEEECCC-------------eE
Q 001349 778 YSPLAFEMVKVLSN-----GHDSSADFWNHRELVHVDSSENGK--VLSIACFRD--KIFSGHSDG-------------TI 835 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~-----s~dg~I~vWd~~~~~~~~~~h~~~--V~~l~fspd--~LaSgs~Dg-------------~I 835 (1094)
...+++||++++.+ +....|++||+.+..... .+... ...++|+ | .|+.++.+. .|
T Consensus 133 ~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~-~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v 210 (693)
T 3iuj_A 133 QLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLE-TPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKV 210 (693)
T ss_dssp EEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEE-EEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEE
T ss_pred EEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCc-cccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEE
Confidence 34688899988853 333679999987432211 12222 3567898 6 777777764 39
Q ss_pred EEEecCCCcc--eeEEEecc-cCCCeEEEEEecCCCEEEEEeC----CCcEEEEECCCCc--eEEEEecccCccceeeee
Q 001349 836 KVWTGRGSIL--HLIQQIRE-HTKAVTGLAILQSGEMLYSGSL----DKTARVWSIGNEE--IHCVQVHDIKDQIQNLAV 906 (1094)
Q Consensus 836 ~vWd~~t~~~--~~~~~l~~-H~~~V~sv~fspdg~~LaSgs~----DgtI~vWdi~~~~--~~~~~~~~~~~~V~~v~~ 906 (1094)
++|++.++.. .++..... |...+.++.|+|||++|+..+. +..|++||+.++. ...+.. .......
T Consensus 211 ~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~--~~~~~~~--- 285 (693)
T 3iuj_A 211 YFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG--DLDADVS--- 285 (693)
T ss_dssp EEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC--SSSSCEE---
T ss_pred EEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC--CCCceEE---
Confidence 9999987643 23444344 5666889999999998865432 2589999998763 222221 1111111
Q ss_pred cCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEE
Q 001349 907 SNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHA 986 (1094)
Q Consensus 907 ~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~s 986 (1094)
.++++|..+.+.+..+ ...+.|..+|+.++.... ...+..|...+.
T Consensus 286 -----~~~~~g~~l~~~t~~~------------------------~~~~~l~~~d~~~~~~~~----~~~l~~~~~~~~- 331 (693)
T 3iuj_A 286 -----LVDNKGSTLYLLTNRD------------------------APNRRLVTVDAANPGPAH----WRDLIPERQQVL- 331 (693)
T ss_dssp -----EEEEETTEEEEEECTT------------------------CTTCEEEEEETTSCCGGG----CEEEECCCSSCE-
T ss_pred -----EEeccCCEEEEEECCC------------------------CCCCEEEEEeCCCCCccc----cEEEecCCCCEE-
Confidence 1455555432221110 123678899998765310 022334444444
Q ss_pred EEEeCCccEEEEEECCCC--EEEEEECCCCeEEEEec--CCCCEEEEEEeCC--EEEEEEcC----CeEEEEECCCCcE
Q 001349 987 LQVHNGLVYTASTSLDGA--AVKMWSTSNYNMVGSLP--TLSEVRAMVVSSE--LVYLGCKG----GTVEIWDQKRQIR 1055 (1094)
Q Consensus 987 l~fs~~~~~las~s~Dg~--~I~iwd~~~~~~~~~~~--~~~~v~~l~~spd--~l~sgs~d----g~I~vwd~~t~~~ 1055 (1094)
.|++++..++....+++ .|++||+..+ ....+. ....+..+.++++ .++....+ ++|+.||+.+++.
T Consensus 332 -~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 332 -TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp -EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred -EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 77777766666554443 6889998754 344444 4456777777766 33333322 8899999988763
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.1e-06 Score=95.37 Aligned_cols=224 Identities=13% Similarity=0.113 Sum_probs=137.0
Q ss_pred cccccCc-EEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCC-EEEEE-ECCCeEEEEecCCCcceeEEE-ecc-c
Q 001349 780 PLAFEMV-KVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD-KIFSG-HSDGTIKVWTGRGSILHLIQQ-IRE-H 854 (1094)
Q Consensus 780 ~~~~d~~-~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd-~LaSg-s~Dg~I~vWd~~t~~~~~~~~-l~~-H 854 (1094)
.+.+++. .+++...++.|..|+.......+..+.+.+..++++++ .++.+ ..++.|.+||.. +....+.. ..+ .
T Consensus 51 ~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~ 129 (305)
T 3dr2_A 51 AWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKR 129 (305)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEE
T ss_pred eEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCc
Confidence 3556777 56667778899999886545556667788999999986 44444 456889999986 53222211 111 1
Q ss_pred CCCeEEEEEecCCCEEEE----EeC-------------CCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCC
Q 001349 855 TKAVTGLAILQSGEMLYS----GSL-------------DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQG 917 (1094)
Q Consensus 855 ~~~V~sv~fspdg~~LaS----gs~-------------DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg 917 (1094)
...++.++++++|++++| |.. .+.|..||..+++...+. . .... ..++|+|||
T Consensus 130 ~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~-~~~p-------~gl~~spdg 199 (305)
T 3dr2_A 130 LNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--D-LDHP-------NGLAFSPDE 199 (305)
T ss_dssp CSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--E-ESSE-------EEEEECTTS
T ss_pred cCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--c-CCCC-------cceEEcCCC
Confidence 235678999999998886 332 245777777666544332 1 1112 234588888
Q ss_pred CeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceee-cCCCCCeEEEEEeCCccEE
Q 001349 918 AGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKL-LGKANPVHALQVHNGLVYT 996 (1094)
Q Consensus 918 ~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~-~~h~~~V~sl~fs~~~~~l 996 (1094)
+.+.+...... ...++.|..||+..+. +... ..+ .........+.+++++.+.
T Consensus 200 ~~lyv~~~~~~----------------------~~~~~~i~~~~~~~~~-l~~~---~~~~~~~~~~pdgi~~d~~G~lw 253 (305)
T 3dr2_A 200 QTLYVSQTPEQ----------------------GHGSVEITAFAWRDGA-LHDR---RHFASVPDGLPDGFCVDRGGWLW 253 (305)
T ss_dssp SEEEEEECCC-------------------------CCCEEEEEEEETTE-EEEE---EEEECCSSSCCCSEEECTTSCEE
T ss_pred CEEEEEecCCc----------------------CCCCCEEEEEEecCCC-ccCC---eEEEECCCCCCCeEEECCCCCEE
Confidence 86433322100 0012567777776543 1100 111 1122345678889888865
Q ss_pred EEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCCe
Q 001349 997 ASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGT 1044 (1094)
Q Consensus 997 as~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~ 1044 (1094)
++. .+ .|.+||. +++.+..+.....+..++|+++ .+++++.++.
T Consensus 254 v~~-~~--gv~~~~~-~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 254 SSS-GT--GVCVFDS-DGQLLGHIPTPGTASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp ECC-SS--EEEEECT-TSCEEEEEECSSCCCEEEECTTSCEEEEEETTEE
T ss_pred Eec-CC--cEEEECC-CCCEEEEEECCCceeEEEEeCCCCEEEEEcCCeE
Confidence 554 33 5999998 5777777775557889999876 6777776543
|
| >2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.64 E-value=7.4e-09 Score=89.26 Aligned_cols=44 Identities=14% Similarity=0.229 Sum_probs=39.3
Q ss_pred ceeccCccccccCcEEcCCccc-ccHHhHHHHHHhCCCCCCCCCcCCCCC
Q 001349 163 DFVCPITTHIFDDPVTLETGQT-YERRAIQEWIERGNSSCPITRQKLSST 211 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~~cGht-fc~~ci~~~~~~~~~~CP~c~~~~~~~ 211 (1094)
++.||||++.+.+||+++|||. ||+.|+.. ...||.||+.+...
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----CCCCccCCceecCc
Confidence 7889999999999999999999 99999964 35799999988753
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=7.9e-08 Score=106.13 Aligned_cols=180 Identities=17% Similarity=0.116 Sum_probs=141.8
Q ss_pred hhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHH-hhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHH
Q 001349 415 KSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVIS-SLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVM 493 (1094)
Q Consensus 415 ~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~ 493 (1094)
+..|+..|..|+. +..|+..+++.|+++.|+. .|++++.+-|..|+.+|..+.+.+..||..+.+.+.++||+
T Consensus 57 k~~Al~~L~~lv~------~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll 130 (296)
T 1xqr_A 57 REGALELLADLCE------NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHT------SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHh------ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHH
Confidence 4455666666633 3357888899999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHhc-CCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCC
Q 001349 494 ESFMAA-SDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRK 572 (1094)
Q Consensus 494 ~l~~~~-~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~ 572 (1094)
.||.+. ....|..|+.+|..+...+.. ..+.+.+.|.++. |+.+|++..++=+--+|.+|.+|-.-.+..+
T Consensus 131 ~LL~~~~~~~v~~~A~~ALsnl~~~~~~-----~~~~~~~~ggi~~---L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~ 202 (296)
T 1xqr_A 131 RLLDRDACDTVRVKALFAISCLVREQEA-----GLLQFLRLDGFSV---LMRAMQQQVQKLKVKSAFLLQNLLVGHPEHK 202 (296)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTTCHH-----HHHHHHHTTHHHH---HHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHccCCCHHHHHHHHHHHHHHHcCCcH-----HHHHHHHCCCHHH---HHHHHcCCCHHHHHHHHHHHHHHHhCChHHH
Confidence 999975 556788889999998765332 2233444566654 8888888777777788888888765322234
Q ss_pred CCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhccc
Q 001349 573 MSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 609 (1094)
Q Consensus 573 ~~~~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~g 609 (1094)
..+..+++++.|+..|.+.+ ..+|+.|+++|.++..
T Consensus 203 ~~vv~~g~i~~Lv~LL~~~d-~~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 203 GTLCSMGMVQQLVALVRTEH-SPFHEHVLGALCSLVT 238 (296)
T ss_dssp HHHHHTTHHHHHHHHHTSCC-STHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHcCCC-hhHHHHHHHHHHHHHh
Confidence 45557889999999998875 4679999999999874
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=3.3e-07 Score=101.19 Aligned_cols=202 Identities=7% Similarity=0.094 Sum_probs=146.3
Q ss_pred HHHHHHHHHhhhcc-----------ccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHH
Q 001349 266 ITELKHAITSLCMS-----------EILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEAT 334 (1094)
Q Consensus 266 ~~~l~~~i~~L~~s-----------~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~a 334 (1094)
.+.++.++.-|.+. ...++...|+..+..+....+....+...+..|. ++..|+.+.++.+++.|
T Consensus 27 ~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~----Lv~~lL~s~~~~vr~~A 102 (296)
T 1xqr_A 27 VEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHL----LVGRYLEAGAAGLRWRA 102 (296)
T ss_dssp HHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHH----HHHTTTTCSSHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHH----HHHHHHcCCCHHHHHHH
Confidence 56677777777653 2233456676667666654432344555555554 55534457899999999
Q ss_pred HHHHHhhcccccchhhhhccCCCcHHHHHHHHhcChHHHHHHHHhcCCChHHHHHhhhhHHHHHHHHhccccccccccCc
Q 001349 335 IFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKP 414 (1094)
Q Consensus 335 v~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g~~~Aa~~l~~L~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~ 414 (1094)
+.+|.++...++...+.+.+ .+.+|+|+.+|.+..+. .-
T Consensus 103 a~~Lg~ia~~n~~~~~~vv~-----------------------------------~g~l~~Ll~LL~~~~~~------~v 141 (296)
T 1xqr_A 103 AQLIGTCSQNVAAIQEQVLG-----------------------------------LGALRKLLRLLDRDACD------TV 141 (296)
T ss_dssp HHHHHHHHTTCHHHHHHHHH-----------------------------------TTHHHHHHHHHHHCSCH------HH
T ss_pred HHHHHHHHhCCHHHHHHHHH-----------------------------------CCCHHHHHHHHccCCCH------HH
Confidence 99999997766655544442 23446666666653211 12
Q ss_pred hhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHH
Q 001349 415 KSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVME 494 (1094)
Q Consensus 415 ~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~ 494 (1094)
+..|+..|..|..++ +.+..+++..||++.|+..|.+++.+-+..|+.+|...+..+...+.++.+.+.+++|+.
T Consensus 142 ~~~A~~ALsnl~~~~-----~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~ 216 (296)
T 1xqr_A 142 RVKALFAISCLVREQ-----EAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVA 216 (296)
T ss_dssp HHHHHHHHHHHHTTC-----HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-----cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHH
Confidence 456666777764433 234556777899999999999999999999999998888888889999999999999999
Q ss_pred HHHhcCCchhHHHHHHHHHHHhc
Q 001349 495 SFMAASDGERFEIVCFLSELVKL 517 (1094)
Q Consensus 495 l~~~~~~~~~~~~~~~l~el~~~ 517 (1094)
||.+.+...+..|+..|..|+..
T Consensus 217 LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 217 LVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHcCCChhHHHHHHHHHHHHHhC
Confidence 99999999999999999999876
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.62 E-value=7.7e-06 Score=101.62 Aligned_cols=264 Identities=14% Similarity=0.173 Sum_probs=157.5
Q ss_pred eCCEEEEEECCCeEEEEecCCCcceeEEEecccCCC----------e-EEEEEecCCCEEEEEeCCCcEEEEECCCCceE
Q 001349 822 FRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKA----------V-TGLAILQSGEMLYSGSLDKTARVWSIGNEEIH 890 (1094)
Q Consensus 822 spd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~----------V-~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~ 890 (1094)
..+.++.++.++.|..+|..+| +.+..+..+... + ..+.+ ++..++.++.|+.|..||..+|+..
T Consensus 69 ~~g~vyv~~~~~~v~AlD~~tG--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~ 144 (689)
T 1yiq_A 69 VDGVMYTTGPFSVVYALDARDG--RLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRA 144 (689)
T ss_dssp ETTEEEEECGGGCEEEEETTTC--CEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred ECCEEEEEcCCCeEEEEECCCC--ceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEe
Confidence 4568888999999999999999 677776543221 1 11222 4568889999999999999999743
Q ss_pred EEEecc-cCccceeee----ecCceEEEee-------CCCeEEEEEeCCeEEEEcCC----C------------------
Q 001349 891 CVQVHD-IKDQIQNLA----VSNSILCFIP-------QGAGIKVHLRNGKTKLLNSS----K------------------ 936 (1094)
Q Consensus 891 ~~~~~~-~~~~V~~v~----~~~~~~~fsp-------dg~~l~~~~~~g~i~l~~~~----~------------------ 936 (1094)
-..... .......+. +....+.+.. +|...+.-..+|.. +|... .
T Consensus 145 W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~-~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 223 (689)
T 1yiq_A 145 WSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKE-AWRFYTVPGDPKLPPEGKGMEIAAKTWF 223 (689)
T ss_dssp EEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCE-EEEEESSCCCTTSCCCSHHHHHHHTTCC
T ss_pred eeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcE-EEEecccCCCcccccccccccccccccC
Confidence 222221 111101111 1111222211 22222222223332 22110 0
Q ss_pred ------------CceEEEEeC--CEEEEEEcCCe-------------------EEEEECCCCceeEEeccc-eeecC--C
Q 001349 937 ------------YPKCLALVQ--GKVYCGCQDGA-------------------IQEIDLATGTFATIQTGH-RKLLG--K 980 (1094)
Q Consensus 937 ------------~v~~l~~s~--~~l~sgs~Dg~-------------------I~iwDl~~~~~~~~~~~~-~~~~~--h 980 (1094)
.-..+.+++ +.+++++.++. |..||..+|+.+..+... ..... .
T Consensus 224 g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~ 303 (689)
T 1yiq_A 224 GDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTA 303 (689)
T ss_dssp SSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCC
T ss_pred CceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccC
Confidence 001355653 77888888764 999999999988654321 00000 1
Q ss_pred CCCeEEEEEeCCcc---EEEEEECCCCEEEEEECCCCeEEEEecCCC---------------------------------
Q 001349 981 ANPVHALQVHNGLV---YTASTSLDGAAVKMWSTSNYNMVGSLPTLS--------------------------------- 1024 (1094)
Q Consensus 981 ~~~V~sl~fs~~~~---~las~s~Dg~~I~iwd~~~~~~~~~~~~~~--------------------------------- 1024 (1094)
..++.......++. .++.++.+| .++++|..+|+.+.......
T Consensus 304 ~~~~~l~d~~~~G~~~~~v~~~~~~G-~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~ 382 (689)
T 1yiq_A 304 TQHMILAELPIDGKPRKVLMQAPKNG-FFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVT 382 (689)
T ss_dssp CSCEEEEEEEETTEEEEEEEECCTTS-EEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEES
T ss_pred CCCcEEEeeccCCcEEEEEEEECCCC-eEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeC
Confidence 12222222223443 677777776 99999999999875433110
Q ss_pred -------CEEEEEEeCC--EEEEEEc---------------------------------------------CCeEEEEEC
Q 001349 1025 -------EVRAMVVSSE--LVYLGCK---------------------------------------------GGTVEIWDQ 1050 (1094)
Q Consensus 1025 -------~v~~l~~spd--~l~sgs~---------------------------------------------dg~I~vwd~ 1050 (1094)
.-..++++|+ .+++++. +|.|+.||+
T Consensus 383 p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~ 462 (689)
T 1yiq_A 383 PAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDP 462 (689)
T ss_dssp SCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEET
T ss_pred CCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEEC
Confidence 0112678886 5555422 378999999
Q ss_pred CCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1051 KRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1051 ~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
.+|+.+..+.. ...+..-.++..+.++++|+.||.|+.||.
T Consensus 463 ~tG~~~W~~~~--~~~~~~g~~~tagglvf~gt~dg~l~a~D~ 503 (689)
T 1yiq_A 463 VKQQAAWEVPY--VTIFNGGTLSTAGNLVFEGSADGRVIAYAA 503 (689)
T ss_dssp TTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred CCCCeEeEccC--CCCccCccceECCCEEEEECCCCcEEEEEC
Confidence 99999888852 233444466778889999999999999996
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.9e-06 Score=94.67 Aligned_cols=249 Identities=13% Similarity=0.107 Sum_probs=151.5
Q ss_pred cEEEEeeCCCCeEEEeCCc-ceeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEe
Q 001349 786 VKVLSNGHDSSADFWNHRE-LVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAIL 864 (1094)
Q Consensus 786 ~~l~s~s~dg~I~vWd~~~-~~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fs 864 (1094)
..+..++.+ +..||... .......+........+..+.++.++.+|.|..+|.. + ........+...+.++.+.
T Consensus 71 g~l~v~t~~--l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~-g--~~~~~~~~~~~~~~~~~~~ 145 (330)
T 3hxj_A 71 GTIYFGSDK--VYAINPDGTEKWRFDTKKAIVSDFTIFEDILYVTSMDGHLYAINTD-G--TEKWRFKTKKAIYATPIVS 145 (330)
T ss_dssp TEECCSSCE--EEEECCCGGGGGGSCC-----CCEEEETTEEEEECTTSEEEEECTT-S--CEEEEEECSSCCCSCCEEC
T ss_pred CcEEEecCc--EEEECCCCcEEEEEECCCCcccCceEECCEEEEEecCCEEEEEcCC-C--CEEEEEcCCCceeeeeEEc
Confidence 344445444 77777541 1112222222233334446688888889999999988 6 4555555555566777777
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEe
Q 001349 865 QSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV 944 (1094)
Q Consensus 865 pdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s 944 (1094)
++|. ++.++.++.|..||.. ++........ ...+.++. +.+
T Consensus 146 ~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~-~~~~~~~~-------~d~----------------------------- 186 (330)
T 3hxj_A 146 EDGT-IYVGSNDNYLYAINPD-GTEKWRFKTN-DAITSAAS-------IGK----------------------------- 186 (330)
T ss_dssp TTSC-EEEECTTSEEEEECTT-SCEEEEEECS-SCCCSCCE-------ECT-----------------------------
T ss_pred CCCE-EEEEcCCCEEEEECCC-CCEeEEEecC-CCceeeeE-------EcC-----------------------------
Confidence 7776 5557777889999988 5422111111 11111111 222
Q ss_pred CCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecC-C
Q 001349 945 QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT-L 1023 (1094)
Q Consensus 945 ~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~-~ 1023 (1094)
++.+++++ +.|..|| .+++..... ......+.++..++++.+.++. .++ .+..+|. ++.....+.. .
T Consensus 187 ~g~l~v~t--~~l~~~d-~~g~~~~~~------~~~~~~~~~~~~~~~g~l~v~t-~~~-gl~~~~~-~g~~~~~~~~~~ 254 (330)
T 3hxj_A 187 DGTIYFGS--DKVYAIN-PDGTEKWNF------YAGYWTVTRPAISEDGTIYVTS-LDG-HLYAINP-DGTEKWRFKTGK 254 (330)
T ss_dssp TCCEEEES--SSEEEEC-TTSCEEEEE------CCSSCCCSCCEECTTSCEEEEE-TTT-EEEEECT-TSCEEEEEECSS
T ss_pred CCEEEEEe--CEEEEEC-CCCcEEEEE------ccCCcceeceEECCCCeEEEEc-CCC-eEEEECC-CCCEeEEeeCCC
Confidence 23466666 8889999 677665332 2223557788888886655543 344 7888874 5666666653 3
Q ss_pred CCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1024 SEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1024 ~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
..+..+.+.++ .+++++.+|.|..+|. +++.+..+. .....+.++...++|. |..++.+|.+++...
T Consensus 255 ~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~-~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~ 322 (330)
T 3hxj_A 255 RIESSPVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFE-TGSWIIATPVIDENGT-IYFGTRNGKFYALFN 322 (330)
T ss_dssp CCCSCCEECTTSCEEEECTTCEEEEECT-TSCEEEEEE-CSSCCCSCCEECTTCC-EEEECTTSCEEEEEC
T ss_pred CccccceEcCCCeEEEecCCCCEEEECC-CCcEEEEEE-cCCccccceEEcCCCE-EEEEcCCCeEEEEec
Confidence 33445566644 8899999999999996 677777663 3345677888877776 566889999988653
|
| >4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.61 E-value=6.2e-09 Score=100.81 Aligned_cols=55 Identities=18% Similarity=0.488 Sum_probs=48.4
Q ss_pred CCceeccCccccccCc-------EEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChh
Q 001349 161 PKDFVCPITTHIFDDP-------VTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTN 217 (1094)
Q Consensus 161 ~~~~~CpIc~~~~~dP-------v~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN 217 (1094)
++++.||||++.|.+| +.++|||+||..||.+|+.. ..+||.||..+..+++. |+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~-~~ 131 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYH-PI 131 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEE-EE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcce-ee
Confidence 3478899999999998 88999999999999999998 45899999999887765 54
|
| >2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.5e-08 Score=87.23 Aligned_cols=47 Identities=21% Similarity=0.457 Sum_probs=40.0
Q ss_pred ceeccCccccccC--------------cEEc-CCcccccHHhHHHHHHhCCCCCCCCCcCCCC
Q 001349 163 DFVCPITTHIFDD--------------PVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSS 210 (1094)
Q Consensus 163 ~~~CpIc~~~~~d--------------Pv~~-~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~ 210 (1094)
+..|+||++.|.+ ++++ +|||.|+..||.+|+.. +.+||+||+.+..
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV 76 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence 6779999999987 4454 69999999999999987 4589999998754
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.3e-06 Score=106.12 Aligned_cols=294 Identities=12% Similarity=0.070 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHH
Q 001349 286 EMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVAL 365 (1094)
Q Consensus 286 e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~l 365 (1094)
..|+..+.++|.....+. .....+...+++.|..+. ...++.|+..|..+ +.++.+++.|....+.+..|+.+
T Consensus 312 ~lAavvL~KL~~~~~~~~-----~si~~La~~~~~~L~~~~-~~~~~~AvEgLaYL-Sl~~~VKe~L~~d~~~L~~Lv~l 384 (778)
T 3opb_A 312 IYSALVLVKTWSFTKLTC-----INLKQLSEIFINAISRRI-VPKVEMSVEALAYL-SLKASVKIMIRSNESFTEILLTM 384 (778)
T ss_dssp HHHHHHHHHHTGGGTCTT-----CCHHHHHHHHHHHTTTCC-HHHHHHHHHHHHHH-TTSSHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCc-----CcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHH-hCCHHHHHHHHhCHHHHHHHHHH
Confidence 445555666665443210 112234555666777643 33499999999999 77888999999888889999999
Q ss_pred Hhc-C----hHHHHHHHHhcCCChHHHHH-hhhhHHHHHHHHhc-cccccccccCchhhHHHHHHHHhcCCccccccc-c
Q 001349 366 FKK-G----LLEAVVLIDLLRPSTRTLIE-MDMMESLMTVIKKK-EEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSS-I 437 (1094)
Q Consensus 366 Lk~-g----~~~Aa~~l~~L~~~~~~~~~-~~~~~~Ll~~l~~~-~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~-~ 437 (1094)
|+. + ...|+.+|.+|....+++.. +..+.-|....... .+. .|+++.+ .. -....+ +
T Consensus 385 lk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~------~~~d~~~--~~-------~~~v~~~~ 449 (778)
T 3opb_A 385 IKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAA------DKVGAEK--AA-------KEDILLFN 449 (778)
T ss_dssp HTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------------CCTHH--HH-------HHHHHHHH
T ss_pred HhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCccc------Ccccccc--cc-------hHHHHHHH
Confidence 995 3 55788899999655443322 11111111111110 000 1111111 10 011223 7
Q ss_pred hhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCc---hhHHHHHHHHHH
Q 001349 438 ANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDG---ERFEIVCFLSEL 514 (1094)
Q Consensus 438 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~l~el 514 (1094)
+..+...|++|.|+.++.+++..-|..|+.+|+... .+..+|..+.+.|++++|+++|.+++.. .|..|..+|..|
T Consensus 450 ~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS-~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArL 528 (778)
T 3opb_A 450 EKYILRTELISFLKREMHNLSPNCKQQVVRIIYNIT-RSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRM 528 (778)
T ss_dssp HHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHH-TSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 889999999999999999999999999999988774 6799999999999999999999998655 688888888888
Q ss_pred HhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCc--------------cchhHHHHHHhhhcccCC----CCCCcc
Q 001349 515 VKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHD--------------QCPVVAGLLLQLDLLAEP----RKMSIY 576 (1094)
Q Consensus 515 ~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~a~~l~~l~~~~~~----~~~~~~ 576 (1094)
+--.- .+. .+..........-|+..|+..+.. |+-=++..|..|....++ -+..+.
T Consensus 529 lis~n----p~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii 602 (778)
T 3opb_A 529 LIFTN----PGL--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIV 602 (778)
T ss_dssp HHTSC----HHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HhcCC----HHH--HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHH
Confidence 74311 111 121111234455577777622221 133577888899887632 235566
Q ss_pred HH-HHHHHHHHHhhcCCChHHHHHHHHHHHhccc
Q 001349 577 RE-EAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 609 (1094)
Q Consensus 577 re-ea~~~~~~~l~~~~~~~~~~~~~~~~~~l~g 609 (1094)
++ +++..|.+.|.++ ...+|..|+.++.||..
T Consensus 603 ~~~ga~~~L~~LL~s~-n~~VrrAA~elI~NL~~ 635 (778)
T 3opb_A 603 STKVYWSTIENLMLDE-NVPLQRSTLELISNMMS 635 (778)
T ss_dssp HSHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHT
T ss_pred HhcCHHHHHHHHHhCC-CHHHHHHHHHHHHHHhC
Confidence 84 8999999998864 55789999999999884
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.56 E-value=8.3e-07 Score=99.16 Aligned_cols=249 Identities=12% Similarity=0.063 Sum_probs=152.1
Q ss_pred CcEEEEeeCCCCeEEEeCC-cceeecccCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEE
Q 001349 785 MVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLA 862 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~-~~~~~~~~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~ 862 (1094)
...+..++.++.|..||.. ........+...+.++...++ .++.++.+ |..||. ++ ..+..+..+........
T Consensus 30 ~g~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g--~~~~~~~~~~~~~~~~~ 104 (330)
T 3hxj_A 30 NGTIYLGSSNKNLYAINTDGSVKWFFKSGEIIECRPSIGKDGTIYFGSDK--VYAINP-DG--TEKWRFDTKKAIVSDFT 104 (330)
T ss_dssp TSCEECSSTTTTTEEECTTSCEEESSCGGGEEEECCEETTTTEECCSSCE--EEEECC-CG--GGGGGSCC-----CCEE
T ss_pred CCeEEEEcCCCEEEEECCCCcEEEEEecCCCcccceEEecCCcEEEecCc--EEEECC-CC--cEEEEEECCCCcccCce
Confidence 4567777788888899932 222222233445567777654 77777666 888886 44 23333322222223333
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEE
Q 001349 863 ILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLA 942 (1094)
Q Consensus 863 fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~ 942 (1094)
+. +..++.++.++.|..+|.. ++....... ....+.++. +.+
T Consensus 105 ~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~-~~~~~~~~~-------~~~--------------------------- 146 (330)
T 3hxj_A 105 IF--EDILYVTSMDGHLYAINTD-GTEKWRFKT-KKAIYATPI-------VSE--------------------------- 146 (330)
T ss_dssp EE--TTEEEEECTTSEEEEECTT-SCEEEEEEC-SSCCCSCCE-------ECT---------------------------
T ss_pred EE--CCEEEEEecCCEEEEEcCC-CCEEEEEcC-CCceeeeeE-------EcC---------------------------
Confidence 33 5567778888999999988 542211111 111111111 112
Q ss_pred EeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-
Q 001349 943 LVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP- 1021 (1094)
Q Consensus 943 ~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~- 1021 (1094)
++.+++|+.++.|..||.. ++....+. .....+.++.+.+++.+.++. + .|..|| .+++....+.
T Consensus 147 --~g~l~vgt~~~~l~~~d~~-g~~~~~~~------~~~~~~~~~~~d~~g~l~v~t---~-~l~~~d-~~g~~~~~~~~ 212 (330)
T 3hxj_A 147 --DGTIYVGSNDNYLYAINPD-GTEKWRFK------TNDAITSAASIGKDGTIYFGS---D-KVYAIN-PDGTEKWNFYA 212 (330)
T ss_dssp --TSCEEEECTTSEEEEECTT-SCEEEEEE------CSSCCCSCCEECTTCCEEEES---S-SEEEEC-TTSCEEEEECC
T ss_pred --CCEEEEEcCCCEEEEECCC-CCEeEEEe------cCCCceeeeEEcCCCEEEEEe---C-EEEEEC-CCCcEEEEEcc
Confidence 3457788888999999998 77654322 223456667777666655544 3 599999 7777776665
Q ss_pred CCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1022 TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1022 ~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
....+.++.++++ .+++++.++.|..+|. +++.+..+. .....+..+.+.+++ .|..++.+|.|..+|.
T Consensus 213 ~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~-~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 213 GYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFK-TGKRIESSPVIGNTD-TIYFGSYDGHLYAINP 282 (330)
T ss_dssp SSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEE-CSSCCCSCCEECTTS-CEEEECTTCEEEEECT
T ss_pred CCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEee-CCCCccccceEcCCC-eEEEecCCCCEEEECC
Confidence 4456778888888 8899999999999984 566666663 333344556666566 4667778888888763
|
| >2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A | Back alignment and structure |
|---|
Probab=98.54 E-value=3.7e-08 Score=81.77 Aligned_cols=46 Identities=22% Similarity=0.301 Sum_probs=41.6
Q ss_pred ceeccCccccccCcEEc--CCccc-ccHHhHHHHHHhCCCCCCCCCcCCC
Q 001349 163 DFVCPITTHIFDDPVTL--ETGQT-YERRAIQEWIERGNSSCPITRQKLS 209 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~--~cGht-fc~~ci~~~~~~~~~~CP~c~~~~~ 209 (1094)
+..|+||++-+.|++.+ +|||. ||..|+.+|+.. +..||.||+.+.
T Consensus 8 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 56 (64)
T 2vje_A 8 IEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ 56 (64)
T ss_dssp GSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred cCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence 67899999999999987 99999 899999999976 457999999875
|
| >2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* | Back alignment and structure |
|---|
Probab=98.49 E-value=5.5e-08 Score=80.46 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=41.5
Q ss_pred ceeccCccccccCcEEc--CCccc-ccHHhHHHHHHhCCCCCCCCCcCCC
Q 001349 163 DFVCPITTHIFDDPVTL--ETGQT-YERRAIQEWIERGNSSCPITRQKLS 209 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~--~cGht-fc~~ci~~~~~~~~~~CP~c~~~~~ 209 (1094)
+..|+||++-+.|++++ +|||. ||..|+.+|+.. ...||+||+++.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence 67899999999999988 99998 999999999876 457999999875
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=3.7e-05 Score=95.20 Aligned_cols=297 Identities=11% Similarity=0.106 Sum_probs=160.7
Q ss_pred cCcEEEEeeCCCCeEEEeCCcceee--cccCC----------Cc-EEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEE
Q 001349 784 EMVKVLSNGHDSSADFWNHRELVHV--DSSEN----------GK-VLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQ 850 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~~~~~~--~~~h~----------~~-V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~ 850 (1094)
.+..++.++.++.|.-+|..+.... ...+. .. -..+++..+.++.++.||.|..+|..+| +.+..
T Consensus 65 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG--~~~W~ 142 (668)
T 1kv9_A 65 HDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTG--KAIWS 142 (668)
T ss_dssp ETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTC--CEEEE
T ss_pred ECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCC--CEeee
Confidence 3455666666777777776522211 11110 01 1234556678999999999999999999 56666
Q ss_pred ecccCC-CeEEEEEec--CCCEEEEEeC------CCcEEEEECCCCceEEEEec-cc-Ccc------------------c
Q 001349 851 IREHTK-AVTGLAILQ--SGEMLYSGSL------DKTARVWSIGNEEIHCVQVH-DI-KDQ------------------I 901 (1094)
Q Consensus 851 l~~H~~-~V~sv~fsp--dg~~LaSgs~------DgtI~vWdi~~~~~~~~~~~-~~-~~~------------------V 901 (1094)
+..... ....+..+| .+..++.++. +|.|..||..+|+..-.... .. ... +
T Consensus 143 ~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~ 222 (668)
T 1kv9_A 143 QQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQY 222 (668)
T ss_dssp EECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCH
T ss_pred eccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccce
Confidence 543210 001111111 1334555543 58999999999974322211 10 000 0
Q ss_pred eeeeecC---ceEEEeeCCCeEEEEEeCC-------------------eEEEEcCCC---------------------Cc
Q 001349 902 QNLAVSN---SILCFIPQGAGIKVHLRNG-------------------KTKLLNSSK---------------------YP 938 (1094)
Q Consensus 902 ~~v~~~~---~~~~fspdg~~l~~~~~~g-------------------~i~l~~~~~---------------------~v 938 (1094)
....... ...++.|++..+.+...++ .+..++... ..
T Consensus 223 w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~ 302 (668)
T 1kv9_A 223 WKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQI 302 (668)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred eeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCc
Confidence 0000000 1134555555555554433 244443211 01
Q ss_pred eEEEE-eCC----EEEEEEcCCeEEEEECCCCceeEEeccce-----eec--------CCC-----------------CC
Q 001349 939 KCLAL-VQG----KVYCGCQDGAIQEIDLATGTFATIQTGHR-----KLL--------GKA-----------------NP 983 (1094)
Q Consensus 939 ~~l~~-s~~----~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~-----~~~--------~h~-----------------~~ 983 (1094)
....+ .++ .++.++.+|.++++|..+|+.+....... .+. .+. ..
T Consensus 303 ~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~ 382 (668)
T 1kv9_A 303 TLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHN 382 (668)
T ss_dssp EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSC
T ss_pred EEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccC
Confidence 11111 133 38889999999999999999873321100 000 000 00
Q ss_pred eEEEEEeCCccEEEEEE------------------------------------CCCCEEEEEECCCCeEEEEecCCCCE-
Q 001349 984 VHALQVHNGLVYTASTS------------------------------------LDGAAVKMWSTSNYNMVGSLPTLSEV- 1026 (1094)
Q Consensus 984 V~sl~fs~~~~~las~s------------------------------------~Dg~~I~iwd~~~~~~~~~~~~~~~v- 1026 (1094)
-..++++|+...+.... .+ +.|..||..+++.+.++......
T Consensus 383 w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~-g~l~A~D~~tG~~~W~~~~~~~~~ 461 (668)
T 1kv9_A 383 WHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVS-GALLAWDPVKQKAAWKVPYPTHWN 461 (668)
T ss_dssp SSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCE-EEEEEEETTTTEEEEEEEESSSCC
T ss_pred CCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCcc-ceEEEEeCCCCcEEEEccCCCCCc
Confidence 11256666543332210 12 38999999999999888744333
Q ss_pred -EEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCC-EEEEEe
Q 001349 1027 -RAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE-FLVIGT 1083 (1094)
Q Consensus 1027 -~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~-~L~sgs 1083 (1094)
..+....+.+++|+.||.+++||..+|+.+..+..+....-.-+.+..+|+ ++++++
T Consensus 462 ~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 462 GGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp CCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred CceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 245556678999999999999999999999988644321223344556776 444443
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.8e-06 Score=104.94 Aligned_cols=286 Identities=10% Similarity=0.059 Sum_probs=191.9
Q ss_pred chhHHHhhhHhhhccCCchHHHHHHHHHHHhhccccc-------------------------------------c-hhhh
Q 001349 310 SKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDK-------------------------------------S-VIHT 351 (1094)
Q Consensus 310 ~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~-------------------------------------~-~~~~ 351 (1094)
..+.++..+++++-.+.+..+.-.+..+|.|+....+ . +++.
T Consensus 373 ~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~ 452 (778)
T 3opb_A 373 SNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKY 452 (778)
T ss_dssp HCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHH
Confidence 3444566677777655566777777888887764211 0 3444
Q ss_pred hccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCChHHHHHh---hhhHHHHHHHHhccccccccccCchhhHHHHHHH
Q 001349 352 LTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTLIEM---DMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQ 424 (1094)
Q Consensus 352 i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~~~~~~~---~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~ 424 (1094)
+. ..|.++.|+.+++++ ...|+.+|++|+..++++..+ |.+++|+++|.++.+..- .-+..|...|..
T Consensus 453 l~-eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~----~~k~~AA~ALAr 527 (778)
T 3opb_A 453 IL-RTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGE----PIRILGCRALTR 527 (778)
T ss_dssp TT-TTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CC----HHHHHHHHHHHH
T ss_pred HH-HCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcch----HHHHHHHHHHHH
Confidence 44 457999999999987 567888999998777766444 455999999999853310 114445555666
Q ss_pred HhcCCcccccccchhh-hccchhHHHHHHhhhc--cc------------HHHHHHHHHHHHHHhhccC----cchhhHhh
Q 001349 425 MIGDSEESIVSSIANT-IVSSKVFESVISSLEA--EW------------AEERIAAVGILLRCMQEDG----KCRNSIAD 485 (1094)
Q Consensus 425 l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~--~~------------~~~~~~~~~~l~~~~~~~~----~~r~~~~~ 485 (1094)
|+-.. |+..... -...|+|++|++.|.. +. ..++..|+..|.+....++ ..|..|..
T Consensus 528 Llis~----np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~ 603 (778)
T 3opb_A 528 MLIFT----NPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVS 603 (778)
T ss_dssp HHHTS----CHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred HHhcC----CHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHH
Confidence 64322 2222211 0124999999999983 21 1346667777776666542 34565666
Q ss_pred -hcCchhHHHHHHhcCCchhHHHHHHHHHHHhccccchhHHHHHHhh-hcC--cchhHHHHHHHHhhcCCccchhHHHHH
Q 001349 486 -KAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIK-DEG--TYSSMHTLLVYLQTANHDQCPVVAGLL 561 (1094)
Q Consensus 486 -~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~-~~~--~~~~~~~~~~~l~~~~~~~~~~~a~~l 561 (1094)
.+.++.+.+|+.+.+...|.+|.+.+..|..-+-. +.+.+- .++ +..-+|+|+.+++....+.|-.||+.|
T Consensus 604 ~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~-----i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagAL 678 (778)
T 3opb_A 604 TKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLT-----IAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIF 678 (778)
T ss_dssp SHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGG-----TGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHH-----HHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 48999999999998888899999999999874311 001111 111 222489999999999999999999999
Q ss_pred HhhhcccCCC-CCCccHHHHHHHHHHHhhcC-CChHHHHHHHHHHHhccc
Q 001349 562 LQLDLLAEPR-KMSIYREEAIDTLISCLRNS-DYPAAQLAAAKTIVSLQG 609 (1094)
Q Consensus 562 ~~l~~~~~~~-~~~~~reea~~~~~~~l~~~-~~~~~~~~~~~~~~~l~g 609 (1094)
..|-.-.+.- +..+-++++++.++..+... +...+|.-++.++.|+..
T Consensus 679 AnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 679 ANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 9985433332 33333458999999999986 566788889999998875
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.43 E-value=6.5e-06 Score=93.15 Aligned_cols=210 Identities=11% Similarity=0.034 Sum_probs=127.2
Q ss_pred eeEEEecccCCCeEEEEEecCCCEEEEEeC--CCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEE
Q 001349 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSL--DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVH 923 (1094)
Q Consensus 846 ~~~~~l~~H~~~V~sv~fspdg~~LaSgs~--DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~ 923 (1094)
+.+..+. ..+..|+++++|+++++... ++.++||.+.+++.. ...... .++.
T Consensus 10 ~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~---------------~~~~----- 63 (343)
T 2qe8_A 10 EVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI---PFPPQS---------------GNAI----- 63 (343)
T ss_dssp EEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE---ESCCCC---------------SSCC-----
T ss_pred EEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee---cCCCcc---------------cCcc-----
Confidence 4444443 67899999999999988642 343666666544321 110000 0000
Q ss_pred EeCCeEEEEcCCCCceEEEEeC-CEEEEEEc------CCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC-ccE
Q 001349 924 LRNGKTKLLNSSKYPKCLALVQ-GKVYCGCQ------DGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG-LVY 995 (1094)
Q Consensus 924 ~~~g~i~l~~~~~~v~~l~~s~-~~l~sgs~------Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~-~~~ 995 (1094)
.+-..+.++++++ +.|++... ++.|.+||+.+++....+........+...+..++++++ +..
T Consensus 64 ---------~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~ 134 (343)
T 2qe8_A 64 ---------ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFV 134 (343)
T ss_dssp ---------CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEE
T ss_pred ---------cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEE
Confidence 0112345555553 45555443 478999999998866443321111223345789999964 555
Q ss_pred EEEEE---CCCCEEEEEECCCCeEEEEecC------------------------------CCCEEEEEEeCC--EEEEEE
Q 001349 996 TASTS---LDGAAVKMWSTSNYNMVGSLPT------------------------------LSEVRAMVVSSE--LVYLGC 1040 (1094)
Q Consensus 996 las~s---~Dg~~I~iwd~~~~~~~~~~~~------------------------------~~~v~~l~~spd--~l~sgs 1040 (1094)
.++.. .+ +.|.+||..+++..+.+.. ...+..++++|| .++.+.
T Consensus 135 yvtd~~~~~~-~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~ 213 (343)
T 2qe8_A 135 YISDPAPDDK-AALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSP 213 (343)
T ss_dssp EEEECCSGGG-CEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEE
T ss_pred EEEcCccCCC-CeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEe
Confidence 45544 34 4899999988876665432 023678999998 677776
Q ss_pred cCC-eEEEEECC---CCc--------EEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1041 KGG-TVEIWDQK---RQI--------RIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1041 ~dg-~I~vwd~~---t~~--------~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
.++ .++.++.. .+. .+..+ ++.+....++++++|.++++...++.|.+||.
T Consensus 214 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 214 MHSTSMYRIKSADLSNLQLTDAELGSKIERY--SEKPICDGISIDKDHNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp SSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE--EECCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred CCCCeEEEEEHHHhcCCCCChhhhhcceEec--ccCCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence 655 55555532 110 01111 33445678999999999999989999999985
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.1e-07 Score=100.73 Aligned_cols=197 Identities=13% Similarity=0.119 Sum_probs=134.9
Q ss_pred hHHHHHHHHhcccc-ccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHH
Q 001349 393 MESLMTVIKKKEED-FLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLR 471 (1094)
Q Consensus 393 ~~~Ll~~l~~~~~~-~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~ 471 (1094)
+|+||..|.+++.. .. +..|...+..| ...+..++..|.+.|+||.||+.|+.++.+-+..|+..|.+
T Consensus 10 i~~lV~lL~s~~~~~~~------q~~Aa~~l~~L-----~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~n 78 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSR------ISAAATFIQHE-----CFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRN 78 (233)
T ss_dssp HHHHHHTCCSSCCCHHH------HHHHHHHHHHH-----HHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCchHHH------HHHHHHHHHHH-----HcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 37888888776531 11 22233334444 12346789999999999999999999999999999999987
Q ss_pred HhhccCcchhhHhhhcCchhHHHHHHh-cCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHH---h
Q 001349 472 CMQEDGKCRNSIADKAELAPVMESFMA-ASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYL---Q 547 (1094)
Q Consensus 472 ~~~~~~~~r~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l---~ 547 (1094)
+...+..+|..|.+.+++++|++||++ ++...+.+|..+|.+|.....-. ..|-+++ +.. |+..+ .
T Consensus 79 La~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k------~~i~~~~-i~~---Lv~ll~~p~ 148 (233)
T 3tt9_A 79 LVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK------NLMITEA-LLT---LTENIIIPF 148 (233)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGH------HHHHHHH-HHH---HCCCCCHHH
T ss_pred HHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhH------HHHHhcc-HHH---HHHHHhccc
Confidence 766677899999999999999999985 67788889999999997653211 1222332 222 22211 1
Q ss_pred hcCCc---c----------chhHHHHHHhhhccc-CCCCCCccHHHHHHHHHHHhhcC----C-ChHHHHHHHHHHHhcc
Q 001349 548 TANHD---Q----------CPVVAGLLLQLDLLA-EPRKMSIYREEAIDTLISCLRNS----D-YPAAQLAAAKTIVSLQ 608 (1094)
Q Consensus 548 ~~~~~---~----------~~~~a~~l~~l~~~~-~~~~~~~~reea~~~~~~~l~~~----~-~~~~~~~~~~~~~~l~ 608 (1094)
++..+ + +.=+|+.|-.|..-. |-|+...-.++.|+.|+..|+.. . .++.|+-|..+|-||.
T Consensus 149 sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs 228 (233)
T 3tt9_A 149 SGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228 (233)
T ss_dssp HCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred cCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHH
Confidence 12111 1 123788888887743 33443332346899999988763 3 4478999999999987
Q ss_pred cc
Q 001349 609 GR 610 (1094)
Q Consensus 609 g~ 610 (1094)
-+
T Consensus 229 ~~ 230 (233)
T 3tt9_A 229 YQ 230 (233)
T ss_dssp CC
T ss_pred hh
Confidence 54
|
| >3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1.2e-07 Score=87.04 Aligned_cols=46 Identities=15% Similarity=0.341 Sum_probs=40.0
Q ss_pred ceeccCccccccCc------------------EEcCCcccccHHhHHHHHHhCCCCCCCCCcCCC
Q 001349 163 DFVCPITTHIFDDP------------------VTLETGQTYERRAIQEWIERGNSSCPITRQKLS 209 (1094)
Q Consensus 163 ~~~CpIc~~~~~dP------------------v~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~ 209 (1094)
+-.|+||++.|.++ +.++|||.|+..||..|+.. +.+||+||+.+.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 56799999999987 34799999999999999987 668999999764
|
| >2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A | Back alignment and structure |
|---|
Probab=98.40 E-value=4.7e-08 Score=84.85 Aligned_cols=43 Identities=16% Similarity=0.336 Sum_probs=38.8
Q ss_pred ceeccCccccccCcEEcCCccc-ccHHhHHHHHHhCCCCCCCCCcCCCC
Q 001349 163 DFVCPITTHIFDDPVTLETGQT-YERRAIQEWIERGNSSCPITRQKLSS 210 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~~cGht-fc~~ci~~~~~~~~~~CP~c~~~~~~ 210 (1094)
+..|+||++.+.+||.++|||. ||..|+..| ..||.||+.+..
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCE
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhC
Confidence 6789999999999999999999 999999865 279999998764
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=0.0017 Score=82.13 Aligned_cols=288 Identities=10% Similarity=0.175 Sum_probs=176.2
Q ss_pred EEEEeeCCCCeEEEeCCcc--eee-cccCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEecc-------cC
Q 001349 787 KVLSNGHDSSADFWNHREL--VHV-DSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIRE-------HT 855 (1094)
Q Consensus 787 ~l~s~s~dg~I~vWd~~~~--~~~-~~~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~-------H~ 855 (1094)
.+..+..++-+..|+.... ... ...+...|.++...++ .+..|+.++-+..||..++. ....... ..
T Consensus 185 ~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~--~~~~~~~~~~~~~l~~ 262 (795)
T 4a2l_A 185 QIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKE--IKNYLHSPSNPKSISS 262 (795)
T ss_dssp EEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTE--EEEECCCTTCTTSCSC
T ss_pred CEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCe--EEEeecCCCCccccCC
Confidence 4444666555778886522 111 1123567888888765 77777766568999988873 2222111 13
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecc------cCccceeeeecCceEEEeeCCCeEEEEEeCCeE
Q 001349 856 KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHD------IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKT 929 (1094)
Q Consensus 856 ~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~------~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i 929 (1094)
..|.++...++|.+.+ |+.+| |.+||..++......... ....|.++. ..++|. +-+++.++.+
T Consensus 263 ~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~-------~D~~g~-lWigt~~~Gl 332 (795)
T 4a2l_A 263 NYIRSLAMDSQNRLWI-GTFND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIF-------MDSQGG-MWLGTYFGGL 332 (795)
T ss_dssp SBEEEEEECTTSCEEE-EESSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEE-------ECTTSC-EEEEESSSCE
T ss_pred CeEEEEEEcCCCCEEE-EeCCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEE-------EeCCcC-EEEEECCCCe
Confidence 5699999988887655 44554 899998887544332211 123455554 445554 3344444444
Q ss_pred EEEcC------------------CCCceEEEEe-CCEEEEEEcCCeEEEEECCCCceeEEeccceee--cCCCCCeEEEE
Q 001349 930 KLLNS------------------SKYPKCLALV-QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKL--LGKANPVHALQ 988 (1094)
Q Consensus 930 ~l~~~------------------~~~v~~l~~s-~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~--~~h~~~V~sl~ 988 (1094)
..++. ...|.++... ++.+.+|+.++.|..||..++............ .-....|.++.
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~ 412 (795)
T 4a2l_A 333 NYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVY 412 (795)
T ss_dssp EEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEE
T ss_pred EEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEE
Confidence 43331 2347777776 477999999989999999887654322110000 01235799999
Q ss_pred EeCCcc-EEEEEECCCCEEEEEECCCCeEEEEec-----CCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEecc
Q 001349 989 VHNGLV-YTASTSLDGAAVKMWSTSNYNMVGSLP-----TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQT 1061 (1094)
Q Consensus 989 fs~~~~-~las~s~Dg~~I~iwd~~~~~~~~~~~-----~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~~ 1061 (1094)
.++++. +.+ ++.++ -|..||..+++...... ....|.++..+++ .++.|+. +.+.+||..+++... +..
T Consensus 413 ~d~~g~~lWi-gt~~~-Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~-~~~ 488 (795)
T 4a2l_A 413 VDEKKSLVYI-GTHAG-GLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTT-IEK 488 (795)
T ss_dssp EETTTTEEEE-EETTT-EEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEE-CCB
T ss_pred EcCCCCEEEE-EeCcC-ceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEE-ccc
Confidence 988876 433 33443 69999998876543321 2456889988876 6777877 458999988775433 311
Q ss_pred c------CCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1062 G------TSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1062 ~------h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
. +...|.++...++|.+.+.. .+| |..||
T Consensus 489 ~~~~~~~~~~~i~~i~~d~~g~lWigt-~~G-l~~~~ 523 (795)
T 4a2l_A 489 EKDGTPVVSKQITTLFRDSHKRLWIGG-EEG-LSVFK 523 (795)
T ss_dssp CTTCCBCCCCCEEEEEECTTCCEEEEE-SSC-EEEEE
T ss_pred cccccccCCceEEEEEECCCCCEEEEe-CCc-eEEEe
Confidence 1 23579999999988866544 444 66665
|
| >2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.38 E-value=3.7e-07 Score=76.63 Aligned_cols=44 Identities=18% Similarity=0.205 Sum_probs=39.3
Q ss_pred CceeccCccccccCcEEcCCccc-ccHHhHHHHHHhCCCCCCCCCcCCCC
Q 001349 162 KDFVCPITTHIFDDPVTLETGQT-YERRAIQEWIERGNSSCPITRQKLSS 210 (1094)
Q Consensus 162 ~~~~CpIc~~~~~dPv~~~cGht-fc~~ci~~~~~~~~~~CP~c~~~~~~ 210 (1094)
++..|+||++...++|.++|||. ||..|+.. ...||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 47889999999999999999999 99999984 3579999998765
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=6.8e-05 Score=80.91 Aligned_cols=201 Identities=11% Similarity=0.076 Sum_probs=127.8
Q ss_pred eeEEEecccCC--CeEEEEEecCCCEEEEEeC--CCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEE
Q 001349 846 HLIQQIREHTK--AVTGLAILQSGEMLYSGSL--DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIK 921 (1094)
Q Consensus 846 ~~~~~l~~H~~--~V~sv~fspdg~~LaSgs~--DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~ 921 (1094)
+.+.++ .|.. ....+.|++|+.+.++.+. +++|+++|..+++....... .....
T Consensus 10 ~vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l--~~~~f------------------- 67 (266)
T 2iwa_A 10 EVLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKM--DDSYF------------------- 67 (266)
T ss_dssp EEEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEEC--CTTCC-------------------
T ss_pred eEEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEec--CCCcc-------------------
Confidence 455666 3554 3579999998755555543 57999999999863322111 11101
Q ss_pred EEEeCCeEEEEcCCCCceEEEEeCCEEEEEE-cCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEE
Q 001349 922 VHLRNGKTKLLNSSKYPKCLALVQGKVYCGC-QDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS 1000 (1094)
Q Consensus 922 ~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs-~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s 1000 (1094)
...+++.++.++.+. .++.+.++|..+.+.+..+... .++ . ..++. ++..+..+.
T Consensus 68 ----------------geGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g---~~~--g-~glt~--Dg~~l~vs~ 123 (266)
T 2iwa_A 68 ----------------GEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ---MKD--G-WGLAT--DGKILYGSD 123 (266)
T ss_dssp ----------------EEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECC---SSS--C-CEEEE--CSSSEEEEC
T ss_pred ----------------eEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECC---CCC--e-EEEEE--CCCEEEEEC
Confidence 011222333444443 5689999999999887544311 111 1 22443 433333333
Q ss_pred CCCCEEEEEECCCCeEEEEecCC------CCEEEEEEeCCEEEEEE-cCCeEEEEECCCCcEEEEecccC----------
Q 001349 1001 LDGAAVKMWSTSNYNMVGSLPTL------SEVRAMVVSSELVYLGC-KGGTVEIWDQKRQIRIETLQTGT---------- 1063 (1094)
Q Consensus 1001 ~Dg~~I~iwd~~~~~~~~~~~~~------~~v~~l~~spd~l~sgs-~dg~I~vwd~~t~~~~~~l~~~h---------- 1063 (1094)
.+ +.|.++|..+.+.+.++.-. ..++.+.|....+++.. .++.|.+.|..+++.+..+..+.
T Consensus 124 gs-~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~ 202 (266)
T 2iwa_A 124 GT-SILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGF 202 (266)
T ss_dssp SS-SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTC
T ss_pred CC-CeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccc
Confidence 44 49999999999988888722 24678888855666666 47899999999999999985321
Q ss_pred --CcceEEEEEcCCCCEE-EEEeCCCcEEEEeC
Q 001349 1064 --SGKVQCMALDDNEEFL-VIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1064 --~~~I~~l~~Spdg~~L-~sgs~DG~I~iWdl 1093 (1094)
....+.++|+|+++.+ +++...+++.+.++
T Consensus 203 ~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 203 RDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL 235 (266)
T ss_dssp TTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred cccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence 1256899999998755 55556777777654
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.2e-07 Score=106.59 Aligned_cols=180 Identities=13% Similarity=0.063 Sum_probs=92.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC
Q 001349 866 SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ 945 (1094)
Q Consensus 866 dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~ 945 (1094)
++..+++++.||.|+.||..+|+..-.... ..+.+.. +..++.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---~~~~s~p-------~~~~g~--------------------------- 50 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE---DPVLQVP-------THVEEP--------------------------- 50 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC---CCSCCCC------------C---------------------------
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC---CCceecc-------eEcCCC---------------------------
Confidence 678999999999999999999863322211 2222221 222222
Q ss_pred CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCC
Q 001349 946 GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSE 1025 (1094)
Q Consensus 946 ~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~ 1025 (1094)
.+++++.||.|+.||..+|+..........-.....++. ..++ .++.++.++ .|..||..+|+.+..+.....
T Consensus 51 -~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~----~~~~-~v~~g~~dg-~v~a~D~~tG~~~w~~~~~~~ 123 (369)
T 2hz6_A 51 -AFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCR----SSDG-ILYMGKKQD-IWYVIDLLTGEKQQTLSSAFA 123 (369)
T ss_dssp -CEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC----------CCCCEEEE-EEEEECCC-------------
T ss_pred -EEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceE----ecCC-EEEEEeCCC-EEEEEECCCCcEEEEecCCCc
Confidence 255567899999999998887543321100000111211 1222 334445565 899999999999888774432
Q ss_pred EEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCC---CEEEEEeCCCcEEEEeC
Q 001349 1026 VRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNE---EFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1026 v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg---~~L~sgs~DG~I~iWdl 1093 (1094)
+. .+-..+.+++++.|+.|+.||..+|+.+..+.. + .....+++.+. ..+++++.||.|+.||.
T Consensus 124 ~~-~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~ 190 (369)
T 2hz6_A 124 DS-LSPSTSLLYLGRTEYTITMYDTKTRELRWNATY-F--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDS 190 (369)
T ss_dssp ----------EEEEEEEEEEECCCSSSSSCCCEEEE-E--EECCBCCCCCTTCCCCEEEEETSCEEEEECT
T ss_pred cc-ccccCCEEEEEecCCEEEEEECCCCCEEEeEec-c--cccCccccCCccccceEEEECCCCEEEEEEC
Confidence 21 111334888999999999999999987766631 1 12233344432 56777889999999986
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=5.3e-05 Score=91.85 Aligned_cols=78 Identities=9% Similarity=0.046 Sum_probs=56.2
Q ss_pred CEEEEEECCCCeEEEEecCCCCEEE--EEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEE
Q 001349 1004 AAVKMWSTSNYNMVGSLPTLSEVRA--MVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVI 1081 (1094)
Q Consensus 1004 ~~I~iwd~~~~~~~~~~~~~~~v~~--l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~s 1081 (1094)
+.|..||..+++.+.++.....+.+ +....+.+++++.||.|+.||..+|+.+..+..++...-.-+.+..+|+.++.
T Consensus 444 g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 4899999999999888874433322 33345688889999999999999999999986554322233446677875543
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.32 E-value=3.4e-06 Score=100.12 Aligned_cols=236 Identities=11% Similarity=0.062 Sum_probs=151.5
Q ss_pred EEEE-EECCCeEEEEecCCCcceeEEEec-ccCCCeEEEEE-e-cCCCEEEEEe------------------CCCcEEEE
Q 001349 825 KIFS-GHSDGTIKVWTGRGSILHLIQQIR-EHTKAVTGLAI-L-QSGEMLYSGS------------------LDKTARVW 882 (1094)
Q Consensus 825 ~LaS-gs~Dg~I~vWd~~t~~~~~~~~l~-~H~~~V~sv~f-s-pdg~~LaSgs------------------~DgtI~vW 882 (1094)
+++. ...++.|.+.|+.+. ++...+. ........+++ + |++.+++.++ .++.+.++
T Consensus 103 ~lfVnd~~~~rVavIdl~t~--~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvI 180 (595)
T 1fwx_A 103 FLFMNDKANTRVARVRCDVM--KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV 180 (595)
T ss_dssp EEEEEETTTTEEEEEETTTT--EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCc--eEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEE
Confidence 4444 445677999999998 5555332 12345788888 5 8999999885 24678999
Q ss_pred ECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCe---------------EEEEcCCCCceEEEEeCCE
Q 001349 883 SIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK---------------TKLLNSSKYPKCLALVQGK 947 (1094)
Q Consensus 883 di~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~---------------i~l~~~~~~v~~l~~s~~~ 947 (1094)
|..+.+. ......... +..+.++|+|+++.+.+.+.. +.+++...... ....|.
T Consensus 181 D~~t~~v--~~qI~Vgg~-------pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~--~v~~Gk 249 (595)
T 1fwx_A 181 DADKWEV--AWQVLVSGN-------LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK--AIAAGD 249 (595)
T ss_dssp ETTTTEE--EEEEEESSC-------CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH--HHHHTC
T ss_pred ECCCCeE--EEEEEeCCC-------ccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE--eccCCC
Confidence 9998642 222211112 233449999999999887742 22222100000 000121
Q ss_pred -EEEEEcCCeEEEEECCC--Cce-eEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCe--------
Q 001349 948 -VYCGCQDGAIQEIDLAT--GTF-ATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN-------- 1015 (1094)
Q Consensus 948 -l~sgs~Dg~I~iwDl~~--~~~-~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~-------- 1015 (1094)
... +.|.+.|.++ ++. +..... .....++.++||+.+++.++....+|.++|+.+.+
T Consensus 250 ~~~i----~~V~VID~~~~~~~~~~~~Ipv-------g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~ 318 (595)
T 1fwx_A 250 YQEL----NGVKVVDGRKEASSLFTRYIPI-------ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENAD 318 (595)
T ss_dssp SEEE----TTEEEEECSGGGCCSSEEEEEE-------ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCC
T ss_pred eeEE----CcEEEEeCcccCCceeEEEEec-------CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccC
Confidence 222 5599999998 543 222111 13566899999999988887666699999998653
Q ss_pred ----EEEEecCCCCEEEEEEeCC-EEEE-EEcCCeEEEEECCC----------CcEEEEecc----cCCcceEEEEEcCC
Q 001349 1016 ----MVGSLPTLSEVRAMVVSSE-LVYL-GCKGGTVEIWDQKR----------QIRIETLQT----GTSGKVQCMALDDN 1075 (1094)
Q Consensus 1016 ----~~~~~~~~~~v~~l~~spd-~l~s-gs~dg~I~vwd~~t----------~~~~~~l~~----~h~~~I~~l~~Spd 1075 (1094)
......-+.....++|+++ .+++ ..-|+.|.+||+.+ .+.+.++.. +|...-.++.++||
T Consensus 319 ~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~D 398 (595)
T 1fwx_A 319 PRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDAT 398 (595)
T ss_dssp GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCC
T ss_pred cccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCC
Confidence 4556666788999999998 4444 45689999999877 567777743 22111123356899
Q ss_pred CCEEEEEeC
Q 001349 1076 EEFLVIGTS 1084 (1094)
Q Consensus 1076 g~~L~sgs~ 1084 (1094)
|++|++++.
T Consensus 399 Gk~l~~~Nk 407 (595)
T 1fwx_A 399 NDWLVCLSK 407 (595)
T ss_dssp SSEEEEEES
T ss_pred CCEEEEcCC
Confidence 999998864
|
| >3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B | Back alignment and structure |
|---|
Probab=98.31 E-value=1.1e-07 Score=105.96 Aligned_cols=45 Identities=16% Similarity=0.278 Sum_probs=40.6
Q ss_pred CCceeccCccccccCcEEcCCccc-ccHHhHHHHHHhCCCCCCCCCcCCCC
Q 001349 161 PKDFVCPITTHIFDDPVTLETGQT-YERRAIQEWIERGNSSCPITRQKLSS 210 (1094)
Q Consensus 161 ~~~~~CpIc~~~~~dPv~~~cGht-fc~~ci~~~~~~~~~~CP~c~~~~~~ 210 (1094)
.+++.||||++.+.+||+++|||+ ||+.|+..| ..||.||..+..
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 347999999999999999999999 999999987 479999998764
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00011 Score=84.38 Aligned_cols=240 Identities=12% Similarity=0.036 Sum_probs=142.5
Q ss_pred EEEEEECCCeEEEEecCCC--cceeEEEec------c-cCCCeEEEEEecCCCEEEEEeCC------CcEEEEECCCCce
Q 001349 825 KIFSGHSDGTIKVWTGRGS--ILHLIQQIR------E-HTKAVTGLAILQSGEMLYSGSLD------KTARVWSIGNEEI 889 (1094)
Q Consensus 825 ~LaSgs~Dg~I~vWd~~t~--~~~~~~~l~------~-H~~~V~sv~fspdg~~LaSgs~D------gtI~vWdi~~~~~ 889 (1094)
++++|-.++.|.|+|+.+. +.+..+++. . ....-..+..+|+| +++++..+ |.|.+.|..+++.
T Consensus 98 l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v 176 (462)
T 2ece_A 98 LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEP 176 (462)
T ss_dssp EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCE
T ss_pred EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeE
Confidence 6777788999999999743 345566662 1 11245667889999 77777666 7899999998763
Q ss_pred EEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeE
Q 001349 890 HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFAT 969 (1094)
Q Consensus 890 ~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~ 969 (1094)
........ .+ ..+ +..+.|+|+++.+++..|..-..+.. .+....+. +-.+.+|.+||+.+++...
T Consensus 177 ~~~~~~~~-~~-~~~---~Yd~~~~p~~~~mvsS~wg~p~~~~~--------g~~~~~~~-~~~~d~V~v~D~~~~k~~~ 242 (462)
T 2ece_A 177 LGKWEIDR-GD-QYL---AYDFWWNLPNEVLVSSEWAVPNTIED--------GLKLEHLK-DRYGNRIHFWDLRKRKRIH 242 (462)
T ss_dssp EEECCSBC-TT-CCC---CCCEEEETTTTEEEECBCCCHHHHTT--------CCCTTTHH-HHSCCEEEEEETTTTEEEE
T ss_pred EEEEccCC-CC-ccc---cceEEECCCCCEEEEccCcCcccccc--------ccchhhhh-hccCCEEEEEECCCCcEee
Confidence 32222111 11 000 11233788888665544320000000 00000000 0346899999999887664
Q ss_pred EeccceeecCCCCCeEEEEE--eCCccEEEEEEC-----CCCEEEEEECCCCeE--EEEe--cC----------------
Q 001349 970 IQTGHRKLLGKANPVHALQV--HNGLVYTASTSL-----DGAAVKMWSTSNYNM--VGSL--PT---------------- 1022 (1094)
Q Consensus 970 ~~~~~~~~~~h~~~V~sl~f--s~~~~~las~s~-----Dg~~I~iwd~~~~~~--~~~~--~~---------------- 1022 (1094)
.+.. .........+.| +|++.+...++. ..++|.+|....+.. .+.+ ..
T Consensus 243 tI~v----g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~ 318 (462)
T 2ece_A 243 SLTL----GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKA 318 (462)
T ss_dssp EEES----CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTE
T ss_pred EEec----CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccccccc
Confidence 3221 101123344555 899888777765 545887776654431 1111 10
Q ss_pred -CCCEEEEEEeCC--EEEEEEc-CCeEEEEECC---CCcEEEEecccCC-------------cceEEEEEcCCCCEEEEE
Q 001349 1023 -LSEVRAMVVSSE--LVYLGCK-GGTVEIWDQK---RQIRIETLQTGTS-------------GKVQCMALDDNEEFLVIG 1082 (1094)
Q Consensus 1023 -~~~v~~l~~spd--~l~sgs~-dg~I~vwd~~---t~~~~~~l~~~h~-------------~~I~~l~~Spdg~~L~sg 1082 (1094)
......+.+|+| +++++.. .+.|.+||+. +.+.+..+..+-. +.-..+.++|||++|+++
T Consensus 319 ~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVa 398 (462)
T 2ece_A 319 VPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVT 398 (462)
T ss_dssp ECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEE
T ss_pred CCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEE
Confidence 245678999998 6666654 6899999985 3456666654411 135889999999999998
Q ss_pred e
Q 001349 1083 T 1083 (1094)
Q Consensus 1083 s 1083 (1094)
+
T Consensus 399 N 399 (462)
T 2ece_A 399 N 399 (462)
T ss_dssp C
T ss_pred c
Confidence 8
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=0.0015 Score=82.48 Aligned_cols=284 Identities=11% Similarity=0.114 Sum_probs=175.7
Q ss_pred EEEEeeCCCCeEEEeCCcc--eeeccc-------CCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEec----
Q 001349 787 KVLSNGHDSSADFWNHREL--VHVDSS-------ENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIR---- 852 (1094)
Q Consensus 787 ~l~s~s~dg~I~vWd~~~~--~~~~~~-------h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~---- 852 (1094)
.+..+..++-+..||.... ...... ....|.++...++ .|..|+.+ -|.+||..++. ......
T Consensus 227 ~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~--~~~~~~~~~~ 303 (795)
T 4a2l_A 227 RIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDS--FASYSSNPVE 303 (795)
T ss_dssp EEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTE--EEEECCCTTS
T ss_pred CEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCe--EEEEecCCCC
Confidence 3444554545778887632 222111 2467999998875 77777776 58899988773 222111
Q ss_pred ---ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecc-----cCccceeeeecCceEEEeeCCCeEEEEE
Q 001349 853 ---EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHD-----IKDQIQNLAVSNSILCFIPQGAGIKVHL 924 (1094)
Q Consensus 853 ---~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~-----~~~~V~~v~~~~~~~~fspdg~~l~~~~ 924 (1094)
-....|.++...++|.+. .|+.++-|..|+..++......... ....|.++. ..++|. +-+++
T Consensus 304 ~~~l~~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~-------~d~~g~-lWiGt 374 (795)
T 4a2l_A 304 NGSLSQRSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIV-------EDKDKN-LWIGT 374 (795)
T ss_dssp TTSCSSSCEEEEEECTTSCEE-EEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEE-------ECTTSC-EEEEE
T ss_pred CCCCCCCcEEEEEEeCCcCEE-EEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEE-------ECCCCC-EEEEE
Confidence 123579999999888754 5666677999988765543332211 122355554 333443 33344
Q ss_pred eCCeEEEEcC--------------------CCCceEEEEe-CCE-EEEEEcCCeEEEEECCCCceeEEeccceeecCCCC
Q 001349 925 RNGKTKLLNS--------------------SKYPKCLALV-QGK-VYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKAN 982 (1094)
Q Consensus 925 ~~g~i~l~~~--------------------~~~v~~l~~s-~~~-l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~ 982 (1094)
.++.+..++. ...|.++... ++. +.+|+.++.|..||..+++.......... ....
T Consensus 375 ~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~--l~~~ 452 (795)
T 4a2l_A 375 NDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQ--LVNE 452 (795)
T ss_dssp SSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSC--CSCS
T ss_pred CCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCC--cCCC
Confidence 4433333321 2346777765 567 99999988999999998876532211101 2345
Q ss_pred CeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-------CCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCc
Q 001349 983 PVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-------TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQI 1054 (1094)
Q Consensus 983 ~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-------~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~ 1054 (1094)
.|.++...+++.+.+++. +| +.+||..+++...... ....|.++..+++ .++.|+. +-|..||..+++
T Consensus 453 ~v~~i~~d~~g~lwigt~-~G--l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~ 528 (795)
T 4a2l_A 453 NVYAILPDGEGNLWLGTL-SA--LVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLD 528 (795)
T ss_dssp CEEEEEECSSSCEEEEES-SC--EEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTE
T ss_pred eeEEEEECCCCCEEEEec-Cc--eeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCe
Confidence 789999888777666553 44 8999988776543221 1356889988877 6777877 568899988776
Q ss_pred EEEEecc------cCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1055 RIETLQT------GTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1055 ~~~~l~~------~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
. .+.. .....|.++..+++|.+.++. .+| |..||
T Consensus 529 ~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~G-l~~~d 568 (795)
T 4a2l_A 529 I--QKASILPVSNVTKLFTNCIYEASNGIIWVGT-REG-FYCFN 568 (795)
T ss_dssp E--EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SSC-EEEEE
T ss_pred E--EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CCC-ceeEC
Confidence 5 3321 133479999999998865544 344 66665
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00027 Score=78.85 Aligned_cols=253 Identities=7% Similarity=-0.031 Sum_probs=137.1
Q ss_pred cEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEec-----------------ccCCCeEEEEEec-CCCEEEEEe
Q 001349 815 KVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIR-----------------EHTKAVTGLAILQ-SGEMLYSGS 874 (1094)
Q Consensus 815 ~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~-----------------~H~~~V~sv~fsp-dg~~LaSgs 874 (1094)
...+++|.++ +++++..++.|..||..++......... .....+..+++.+ +|+ |+.+.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEE
Confidence 3456778775 5888889999999998876322221100 0123578999998 555 55554
Q ss_pred CCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEee-CCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEc
Q 001349 875 LDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP-QGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQ 953 (1094)
Q Consensus 875 ~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fsp-dg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~ 953 (1094)
..+.|..+|..++....+.......+. ..+..+++.+ +|+..+...... +...... ..++.+..
T Consensus 99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~----~~p~~i~~d~~~G~l~v~d~~~~----~~~~~~~-------~~~~~~~~ 163 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLATSVDGVPF----KWLYAVTVDQRTGIVYFTDVSTL----YDDRGVQ-------QIMDTSDK 163 (322)
T ss_dssp TTTEEEEECTTCEECEEEESEETTEEC----SCEEEEEECTTTCCEEEEESCSS----CCTTCHH-------HHHHHTCC
T ss_pred CCCCEEEEeCCCCEEEEecccCCCCcc----cccceEEEecCCCEEEEECCccc----ccccccc-------eehcccCC
Confidence 445588888876543332211100000 0122334666 665322211100 0000000 00000122
Q ss_pred CCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCe--EEEEe-cCCCCEEEEE
Q 001349 954 DGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN--MVGSL-PTLSEVRAMV 1030 (1094)
Q Consensus 954 Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~--~~~~~-~~~~~v~~l~ 1030 (1094)
++.|..||..+++...... . ....+.+++++++.++..+....+.|..|++.... ....+ ...+ ...++
T Consensus 164 ~g~v~~~d~~~~~~~~~~~---~----~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~ 235 (322)
T 2fp8_A 164 TGRLIKYDPSTKETTLLLK---E----LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIK 235 (322)
T ss_dssp CEEEEEEETTTTEEEEEEE---E----ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEE
T ss_pred CceEEEEeCCCCEEEEecc---C----CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeE
Confidence 4678888887765432211 1 12345789999987544443333489999987421 11111 1223 78899
Q ss_pred EeCC-EEEEEEc-----------CCeEEEEECCCCcEEEEecccC---CcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1031 VSSE-LVYLGCK-----------GGTVEIWDQKRQIRIETLQTGT---SGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1031 ~spd-~l~sgs~-----------dg~I~vwd~~t~~~~~~l~~~h---~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
++++ .++++.. .+.|..+|.. ++.+..+.... ...++++++ .++.+.++...++.|..+++
T Consensus 236 ~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~ 311 (322)
T 2fp8_A 236 RNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVY 311 (322)
T ss_dssp ECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC
T ss_pred ECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEec
Confidence 9987 3444432 4678889874 77777664222 235777777 46666666667888988876
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00019 Score=76.63 Aligned_cols=190 Identities=9% Similarity=0.068 Sum_probs=123.4
Q ss_pred eeEEEecccCCC--eEEEEEecCCCEEEEEeCCC--cEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEE
Q 001349 846 HLIQQIREHTKA--VTGLAILQSGEMLYSGSLDK--TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIK 921 (1094)
Q Consensus 846 ~~~~~l~~H~~~--V~sv~fspdg~~LaSgs~Dg--tI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~ 921 (1094)
+.+.++ .|... ...+.|+ ++.+..+++.+| .|+++|+.+++...... .......
T Consensus 32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~--l~~~~Fg------------------ 89 (262)
T 3nol_A 32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIE--LGKRYFG------------------ 89 (262)
T ss_dssp EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEE--CCTTCCE------------------
T ss_pred EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEe--cCCccce------------------
Confidence 455566 45544 4788998 777777888776 89999999986332221 1111111
Q ss_pred EEEeCCeEEEEcCCCCceEEEEeCCEEEEEE-cCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEE
Q 001349 922 VHLRNGKTKLLNSSKYPKCLALVQGKVYCGC-QDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS 1000 (1094)
Q Consensus 922 ~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs-~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s 1000 (1094)
-.+++.+++++... .++.+.+||..+.+.+..+... ++. ..+++. +..++++ .
T Consensus 90 -----------------eGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~----~eG---~glt~d-g~~L~~S-d 143 (262)
T 3nol_A 90 -----------------EGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYD----GEG---WGLTHN-DQYLIMS-D 143 (262)
T ss_dssp -----------------EEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECS----SCC---CCEEEC-SSCEEEC-C
T ss_pred -----------------eEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECC----CCc---eEEecC-CCEEEEE-C
Confidence 11222233444443 4789999999999988654421 211 233333 2333333 3
Q ss_pred CCCCEEEEEECCCCeEEEEecC---C---CCEEEEEEeCCEEEEEE-cCCeEEEEECCCCcEEEEecccC----------
Q 001349 1001 LDGAAVKMWSTSNYNMVGSLPT---L---SEVRAMVVSSELVYLGC-KGGTVEIWDQKRQIRIETLQTGT---------- 1063 (1094)
Q Consensus 1001 ~Dg~~I~iwd~~~~~~~~~~~~---~---~~v~~l~~spd~l~sgs-~dg~I~vwd~~t~~~~~~l~~~h---------- 1063 (1094)
.+ ..|.++|..+.+.+.++.- + ..++.+.+....+++.. .++.|.+.|..+++.+..+....
T Consensus 144 Gs-~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~ 222 (262)
T 3nol_A 144 GT-PVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPS 222 (262)
T ss_dssp SS-SEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCS
T ss_pred CC-CeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccC
Confidence 34 3899999999998888762 2 33556778766777766 57899999999999998885320
Q ss_pred -CcceEEEEEcCCCCEEEEEeC
Q 001349 1064 -SGKVQCMALDDNEEFLVIGTS 1084 (1094)
Q Consensus 1064 -~~~I~~l~~Spdg~~L~sgs~ 1084 (1094)
....+.|||+|+++.|+..+.
T Consensus 223 ~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 223 PIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp SCCCEEEEEEETTTTEEEEEET
T ss_pred cCCceEEEEEcCCCCEEEEECC
Confidence 135689999999888777764
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00018 Score=87.27 Aligned_cols=135 Identities=16% Similarity=0.032 Sum_probs=85.5
Q ss_pred CeEEEEECCCCceeEEeccce----eecCCCCCeEEEEEeCCc---cEEEEEECCCCEEEEEECCCCeEEEEecCCC---
Q 001349 955 GAIQEIDLATGTFATIQTGHR----KLLGKANPVHALQVHNGL---VYTASTSLDGAAVKMWSTSNYNMVGSLPTLS--- 1024 (1094)
Q Consensus 955 g~I~iwDl~~~~~~~~~~~~~----~~~~h~~~V~sl~fs~~~---~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~--- 1024 (1094)
+.|..+|..+|+.+..++... .+.....++. +....++ ..++.++.+| .+.++|..+|+.+..+....
T Consensus 272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G-~l~~lD~~tG~~~w~~~~~~~~~ 349 (571)
T 2ad6_A 272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNG-ILYTLNRENGNLIVAEKVDPAVN 349 (571)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTS-EEEEEETTTCCEEEEEESSTTCC
T ss_pred EEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCc-EEEEEECCCCCEEeeecccCCcc
Confidence 369999999999876543210 0001122222 2222355 3456666665 99999999999887765211
Q ss_pred -----------CE--------------------------EEEEEeCC--EEEEEE-------------------------
Q 001349 1025 -----------EV--------------------------RAMVVSSE--LVYLGC------------------------- 1040 (1094)
Q Consensus 1025 -----------~v--------------------------~~l~~spd--~l~sgs------------------------- 1040 (1094)
++ ..++++|+ .+++.+
T Consensus 350 w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~ 429 (571)
T 2ad6_A 350 VFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATL 429 (571)
T ss_dssp SEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred ccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccc
Confidence 11 23567776 555543
Q ss_pred ------------cCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1041 ------------KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1041 ------------~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
.+|.|..||..+++.+.++..+ ..+.+..+...+..++.++.||.|+.||.
T Consensus 430 ~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~--~~~~~~~~~t~gg~v~~g~~dg~l~a~D~ 492 (571)
T 2ad6_A 430 AMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK--FAAWGGTLYTKGGLVWYATLDGYLKALDN 492 (571)
T ss_dssp EEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES--SCCCSBCEEETTTEEEEECTTSEEEEEET
T ss_pred eeccCccccCCCCCCeEEEEECCCCCEEEEecCC--CCccceeEEECCCEEEEEcCCCeEEEEEC
Confidence 3578999999999988887532 23333333445677888999999999985
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00042 Score=85.66 Aligned_cols=260 Identities=15% Similarity=0.144 Sum_probs=152.7
Q ss_pred eCCEEEEEECCCeEEEEecCCCcceeEEEecccCCC----------e-EEEEEecCCCEEEEEeCCCcEEEEECCCCceE
Q 001349 822 FRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKA----------V-TGLAILQSGEMLYSGSLDKTARVWSIGNEEIH 890 (1094)
Q Consensus 822 spd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~----------V-~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~ 890 (1094)
..+.++.++.++.|.-+|..+| +.+..+...... + ..+++ ++..++.++.|+.|..+|..+|+..
T Consensus 65 ~~g~vyv~~~~~~v~AlD~~tG--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~ 140 (668)
T 1kv9_A 65 HDGVIYTSMSWSRVIAVDAASG--KELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAI 140 (668)
T ss_dssp ETTEEEEEEGGGEEEEEETTTC--CEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEE
T ss_pred ECCEEEEECCCCeEEEEECCCC--hhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEe
Confidence 4568888999999999999999 677776533211 1 11223 3567888999999999999999743
Q ss_pred EEEecccC---cccee-eeecCceEEEee-------CCCeEEEEEeCCeEEEEcCC----C-------------------
Q 001349 891 CVQVHDIK---DQIQN-LAVSNSILCFIP-------QGAGIKVHLRNGKTKLLNSS----K------------------- 936 (1094)
Q Consensus 891 ~~~~~~~~---~~V~~-v~~~~~~~~fsp-------dg~~l~~~~~~g~i~l~~~~----~------------------- 936 (1094)
-....... ..+.+ ..+....+.+.. +|...+.-..+|.+ +|... .
T Consensus 141 W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~-~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 219 (668)
T 1kv9_A 141 WSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKL-AWRFYTVPGDPALPYEHPELREAAKTWQG 219 (668)
T ss_dssp EEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCE-EEEEESSCCCTTSCCSSHHHHHHHTTCCS
T ss_pred eeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcE-EEEecccCCCCCccccccccccccccCCc
Confidence 22222110 01110 001111121211 12222222222332 22110 0
Q ss_pred -----------CceEEEEe--CCEEEEEEcCC-------------------eEEEEECCCCceeEEeccceeecCCC---
Q 001349 937 -----------YPKCLALV--QGKVYCGCQDG-------------------AIQEIDLATGTFATIQTGHRKLLGKA--- 981 (1094)
Q Consensus 937 -----------~v~~l~~s--~~~l~sgs~Dg-------------------~I~iwDl~~~~~~~~~~~~~~~~~h~--- 981 (1094)
....++++ .+.+++++.++ .|..+|..+|+....+... .|.
T Consensus 220 ~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~----~~~~wd 295 (668)
T 1kv9_A 220 DQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVT----PGDSWD 295 (668)
T ss_dssp SCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS----TTCCSC
T ss_pred cceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecC----CCcccc
Confidence 00124554 36788888776 3999999999988654321 121
Q ss_pred ----CCeEEEEEeCCcc---EEEEEECCCCEEEEEECCCCeEEEEecCCC--C---------------------------
Q 001349 982 ----NPVHALQVHNGLV---YTASTSLDGAAVKMWSTSNYNMVGSLPTLS--E--------------------------- 1025 (1094)
Q Consensus 982 ----~~V~sl~fs~~~~---~las~s~Dg~~I~iwd~~~~~~~~~~~~~~--~--------------------------- 1025 (1094)
.+.....+..++. +++.++.+| .+.++|..+|+.+..+.... .
T Consensus 296 ~~~~~~~~~~d~~~~G~~~~~v~~~~~~G-~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~ 374 (668)
T 1kv9_A 296 FTATQQITLAELNIDGKPRKVLMQAPKNG-FFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMW 374 (668)
T ss_dssp CCCCSCEEEEEEEETTEEEEEEEECCTTS-EEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEES
T ss_pred ccCCCCcEEEEeccCCcEEEEEEEECCCC-EEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEEC
Confidence 2333333333443 567777776 99999999999885443110 0
Q ss_pred --------EEEEEEeCC--EEEEEE------------------------------------cCCeEEEEECCCCcEEEEe
Q 001349 1026 --------VRAMVVSSE--LVYLGC------------------------------------KGGTVEIWDQKRQIRIETL 1059 (1094)
Q Consensus 1026 --------v~~l~~spd--~l~sgs------------------------------------~dg~I~vwd~~t~~~~~~l 1059 (1094)
-..++++|+ .+++.. .+|.|..||..+|+.+..+
T Consensus 375 p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~ 454 (668)
T 1kv9_A 375 PSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKV 454 (668)
T ss_dssp SCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEE
T ss_pred CCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEc
Confidence 012577776 444311 2488999999999998887
Q ss_pred cccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1060 QTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1060 ~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
.. ...+....+...+.++++++.||.|+.||.
T Consensus 455 ~~--~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~ 486 (668)
T 1kv9_A 455 PY--PTHWNGGTLSTAGNLVFQGTAAGQMHAYSA 486 (668)
T ss_dssp EE--SSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred cC--CCCCcCceeEeCCCEEEEECCcccchhhhh
Confidence 53 223444455567889999999999999985
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00026 Score=85.91 Aligned_cols=77 Identities=14% Similarity=0.198 Sum_probs=56.1
Q ss_pred CEEEEEECCCCeEEEEecCCCCEE--EEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEE
Q 001349 1004 AAVKMWSTSNYNMVGSLPTLSEVR--AMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLV 1080 (1094)
Q Consensus 1004 ~~I~iwd~~~~~~~~~~~~~~~v~--~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~ 1080 (1094)
+.|..||+.+++.+.+......+. .+....+.++.|+.||.++.||.++|+.+..++.+....-.-+.|..+|+..+
T Consensus 466 G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred ceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence 389999999999988877433322 24445668888999999999999999999998644332223366777886443
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00024 Score=86.25 Aligned_cols=75 Identities=12% Similarity=0.086 Sum_probs=55.4
Q ss_pred CEEEEEECCCCeEEEEecCCCCEE--EEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCE
Q 001349 1004 AAVKMWSTSNYNMVGSLPTLSEVR--AMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEF 1078 (1094)
Q Consensus 1004 ~~I~iwd~~~~~~~~~~~~~~~v~--~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~ 1078 (1094)
+.|..||+.+++.+.+........ .+....+.++.|+.||.++.||..+|+.+..++.+......-+.|..+|+.
T Consensus 453 G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~q 529 (599)
T 1w6s_A 453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ 529 (599)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence 389999999999988876432222 245566788889999999999999999999886444333344566678864
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00028 Score=80.94 Aligned_cols=227 Identities=11% Similarity=0.080 Sum_probs=134.5
Q ss_pred ccCcE-EEEeeCCCCeEEEeCC------cceeecc------c-CCCcEEEEEEeCC-EEEEEECC------CeEEEEecC
Q 001349 783 FEMVK-VLSNGHDSSADFWNHR------ELVHVDS------S-ENGKVLSIACFRD-KIFSGHSD------GTIKVWTGR 841 (1094)
Q Consensus 783 ~d~~~-l~s~s~dg~I~vWd~~------~~~~~~~------~-h~~~V~~l~fspd-~LaSgs~D------g~I~vWd~~ 841 (1094)
.+.++ ++++..+++|.|+|+. +...+.. . .......+.++|+ +++++..+ |.|.+.|..
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~ 172 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHY 172 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECC
Confidence 34554 5567778999999985 1222221 1 1124566778887 66666555 789999999
Q ss_pred CCcceeEEEecccCC---CeEEEEEecCCCEEEEEe-------------------CCCcEEEEECCCCceEEEEecccC-
Q 001349 842 GSILHLIQQIREHTK---AVTGLAILQSGEMLYSGS-------------------LDKTARVWSIGNEEIHCVQVHDIK- 898 (1094)
Q Consensus 842 t~~~~~~~~l~~H~~---~V~sv~fspdg~~LaSgs-------------------~DgtI~vWdi~~~~~~~~~~~~~~- 898 (1094)
+. +.+.++....+ --..+-|+|+++.+++.. .+.+|.+||+.+++ ........
T Consensus 173 T~--~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k--~~~tI~vg~ 248 (462)
T 2ece_A 173 SF--EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK--RIHSLTLGE 248 (462)
T ss_dssp TC--CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE--EEEEEESCT
T ss_pred CC--eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc--EeeEEecCC
Confidence 98 67777752222 234577899999998885 36899999999874 22222221
Q ss_pred --ccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEe---cc
Q 001349 899 --DQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQ---TG 973 (1094)
Q Consensus 899 --~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~---~~ 973 (1094)
.....+. ..|+|+|++..+...- .+- ..+++|.+|....+...... ..
T Consensus 249 ~g~~P~~i~-----f~~~Pdg~~aYV~~e~---~~~-------------------~Lss~V~v~~~d~g~~~~~~vIdi~ 301 (462)
T 2ece_A 249 ENRMALELR-----PLHDPTKLMGFINMVV---SLK-------------------DLSSSIWLWFYEDGKWNAEKVIEIP 301 (462)
T ss_dssp TEEEEEEEE-----ECSSTTCCEEEEEEEE---ETT-------------------TCCEEEEEEEEETTEEEEEEEEEEC
T ss_pred CCCccceeE-----eeECCCCCEEEEEEee---ecc-------------------CCCceEEEEEecCCceeEEEEEeCC
Confidence 1222332 1148888875544420 000 02233333332222211000 00
Q ss_pred ceeec-----------CCCCCeEEEEEeCCccEEEEEECCCCEEEEEECC---CCeEEEEecCCC---------------
Q 001349 974 HRKLL-----------GKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS---NYNMVGSLPTLS--------------- 1024 (1094)
Q Consensus 974 ~~~~~-----------~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~---~~~~~~~~~~~~--------------- 1024 (1094)
..... +-......+.+++|+.++..+....+.|.+||+. +.+.+..+..++
T Consensus 302 ~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~g 381 (462)
T 2ece_A 302 AEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTG 381 (462)
T ss_dssp CEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCS
T ss_pred CccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCC
Confidence 00000 0023567899999999988888777799999986 345666665331
Q ss_pred CEEEEEEeCC--EEEEEE
Q 001349 1025 EVRAMVVSSE--LVYLGC 1040 (1094)
Q Consensus 1025 ~v~~l~~spd--~l~sgs 1040 (1094)
....+.++|| +++++.
T Consensus 382 gPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 382 APQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCCEEECTTSSEEEEEC
T ss_pred CCCEEEEcCCCCEEEEEc
Confidence 3688999998 777776
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00058 Score=72.20 Aligned_cols=190 Identities=14% Similarity=0.102 Sum_probs=123.4
Q ss_pred eeEEEecccCC--CeEEEEEecCCCEEEEEeCCC--cEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEE
Q 001349 846 HLIQQIREHTK--AVTGLAILQSGEMLYSGSLDK--TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIK 921 (1094)
Q Consensus 846 ~~~~~l~~H~~--~V~sv~fspdg~~LaSgs~Dg--tI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~ 921 (1094)
+.+.++ .|.. -...+.|+. +.+..+.+.+| .|+++|+.+++..... .........
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~--~l~~~~fge----------------- 68 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA--EVPPPYFGA----------------- 68 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE--ECCTTCCEE-----------------
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE--eCCCCccee-----------------
Confidence 455666 4654 366899986 66666767654 8999999998633222 111111111
Q ss_pred EEEeCCeEEEEcCCCCceEEEEeCCEEEE-EEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEE
Q 001349 922 VHLRNGKTKLLNSSKYPKCLALVQGKVYC-GCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS 1000 (1094)
Q Consensus 922 ~~~~~g~i~l~~~~~~v~~l~~s~~~l~s-gs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s 1000 (1094)
.+++.+++++. .-.++.+.+||..+.+.+..+... ++ . ..++.. ++.++++-
T Consensus 69 ------------------Gi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~----~~--G-wglt~d-g~~L~vSd- 121 (243)
T 3mbr_X 69 ------------------GIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYP----GE--G-WALTSD-DSHLYMSD- 121 (243)
T ss_dssp ------------------EEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECS----SC--C-CEEEEC-SSCEEEEC-
T ss_pred ------------------EEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCC----CC--c-eEEeeC-CCEEEEEC-
Confidence 12222333433 345789999999999988654421 21 1 344433 33444443
Q ss_pred CCCCEEEEEECCCCeEEEEecCC------CCEEEEEEeCCEEEEEE-cCCeEEEEECCCCcEEEEeccc-----------
Q 001349 1001 LDGAAVKMWSTSNYNMVGSLPTL------SEVRAMVVSSELVYLGC-KGGTVEIWDQKRQIRIETLQTG----------- 1062 (1094)
Q Consensus 1001 ~Dg~~I~iwd~~~~~~~~~~~~~------~~v~~l~~spd~l~sgs-~dg~I~vwd~~t~~~~~~l~~~----------- 1062 (1094)
.+ ..|.++|..+.+.+.++.-. ..++.+.+....+++.. .++.|.+.|..+|+.+..+..+
T Consensus 122 gs-~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~ 200 (243)
T 3mbr_X 122 GT-AVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTD 200 (243)
T ss_dssp SS-SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCC
T ss_pred CC-CeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccC
Confidence 34 48999999999998888721 45677888877777666 5789999999999999888522
Q ss_pred -CCcceEEEEEcCCCCEEEEEeC
Q 001349 1063 -TSGKVQCMALDDNEEFLVIGTS 1084 (1094)
Q Consensus 1063 -h~~~I~~l~~Spdg~~L~sgs~ 1084 (1094)
.....+.|+|+|+++.|+..+.
T Consensus 201 ~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 201 STNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTSSCEEEEEEETTTTEEEEEET
T ss_pred CcCCceEEEEEcCCCCEEEEECC
Confidence 1235699999998877776654
|
| >4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.15 E-value=3e-07 Score=85.42 Aligned_cols=46 Identities=15% Similarity=0.369 Sum_probs=0.4
Q ss_pred ceeccCccccccCcE-----------------E-cCCcccccHHhHHHHHHhCCCCCCCCCcCCC
Q 001349 163 DFVCPITTHIFDDPV-----------------T-LETGQTYERRAIQEWIERGNSSCPITRQKLS 209 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv-----------------~-~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~ 209 (1094)
+-.|+||++.|.+|. + ++|||.|+..||..|+.. +..||+||+.+.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 457999999998853 2 489999999999999988 568999998764
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=0.0008 Score=72.49 Aligned_cols=195 Identities=10% Similarity=0.034 Sum_probs=123.7
Q ss_pred CcEEEEEEeCC-EEEEEEC---CCeEEEEecCCCcceeEEEecc-cCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCC
Q 001349 814 GKVLSIACFRD-KIFSGHS---DGTIKVWTGRGSILHLIQQIRE-HTKAVTGLAILQSGEMLYSGS-LDKTARVWSIGNE 887 (1094)
Q Consensus 814 ~~V~~l~fspd-~LaSgs~---Dg~I~vWd~~t~~~~~~~~l~~-H~~~V~sv~fspdg~~LaSgs-~DgtI~vWdi~~~ 887 (1094)
.....+.|+++ .|+.++. ++.|++.|..++ +.+..+.- .......+++. |+.|+.+. .++.+.++|..+.
T Consensus 21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg--~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~ 96 (266)
T 2iwa_A 21 AFTQGLVYAENDTLFESTGLYGRSSVRQVALQTG--KVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTL 96 (266)
T ss_dssp CCEEEEEECSTTEEEEEECSTTTCEEEEEETTTC--CEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTT
T ss_pred CCcccEEEeCCCeEEEECCCCCCCEEEEEECCCC--CEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCC
Confidence 34689999995 5555442 689999999999 55665532 11122345554 55555554 5789999999987
Q ss_pred ceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCce
Q 001349 888 EIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTF 967 (1094)
Q Consensus 888 ~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~ 967 (1094)
+. +....... +....+++||+. ++++..++.|.++|..+.+.
T Consensus 97 ~v--~~~i~~g~--------~~g~glt~Dg~~----------------------------l~vs~gs~~l~viD~~t~~v 138 (266)
T 2iwa_A 97 SN--IKNFTHQM--------KDGWGLATDGKI----------------------------LYGSDGTSILYEIDPHTFKL 138 (266)
T ss_dssp EE--EEEEECCS--------SSCCEEEECSSS----------------------------EEEECSSSEEEEECTTTCCE
T ss_pred cE--EEEEECCC--------CCeEEEEECCCE----------------------------EEEECCCCeEEEEECCCCcE
Confidence 52 22221110 112225556654 55555678999999998887
Q ss_pred eEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCC--------------CCEEEEEEeC
Q 001349 968 ATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTL--------------SEVRAMVVSS 1033 (1094)
Q Consensus 968 ~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~--------------~~v~~l~~sp 1033 (1094)
......... ...-..++.+.|. ++...+....+ ..|.+.|..+++.+..+.-. .....++++|
T Consensus 139 ~~~I~Vg~~-~~p~~~~nele~~-dg~lyvn~~~~-~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~ 215 (266)
T 2iwa_A 139 IKKHNVKYN-GHRVIRLNELEYI-NGEVWANIWQT-DCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQ 215 (266)
T ss_dssp EEEEECEET-TEECCCEEEEEEE-TTEEEEEETTS-SEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEET
T ss_pred EEEEEECCC-CcccccceeEEEE-CCEEEEecCCC-CeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcC
Confidence 644321100 0011246778888 55554554344 49999999999999888632 3578999998
Q ss_pred C---EEEEEEcCCeEEEEECCCC
Q 001349 1034 E---LVYLGCKGGTVEIWDQKRQ 1053 (1094)
Q Consensus 1034 d---~l~sgs~dg~I~vwd~~t~ 1053 (1094)
+ +++++...+.+++.++...
T Consensus 216 ~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 216 ENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp TTTEEEEEETTCSEEEEEEEEEC
T ss_pred CCCEEEEECCCCCeEEEEEEecc
Confidence 7 5666667788988886543
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.003 Score=79.56 Aligned_cols=286 Identities=13% Similarity=0.143 Sum_probs=173.1
Q ss_pred EEEeeCCCCeEEEeCCcc--eeecc-------cCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEE-------
Q 001349 788 VLSNGHDSSADFWNHREL--VHVDS-------SENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQ------- 850 (1094)
Q Consensus 788 l~s~s~dg~I~vWd~~~~--~~~~~-------~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~------- 850 (1094)
+..|..+ -+.+||.... ..... .....|.++...++ .|..|+..+-|.++|..++.......
T Consensus 224 lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~ 302 (781)
T 3v9f_A 224 IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIR 302 (781)
T ss_dssp EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEEC
T ss_pred EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeecccccccc
Confidence 3334444 5777886521 11111 12467999998776 88888886778889988763322211
Q ss_pred e-----cccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEec-------c-cCccceeeeecCceEEEeeCC
Q 001349 851 I-----REHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVH-------D-IKDQIQNLAVSNSILCFIPQG 917 (1094)
Q Consensus 851 l-----~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~-------~-~~~~V~~v~~~~~~~~fspdg 917 (1094)
. .-....|.++...++|. |..|+.++-|..|+..++........ . ....|.++. ..++|
T Consensus 303 ~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~-------~d~~g 374 (781)
T 3v9f_A 303 EGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVC-------DDGQG 374 (781)
T ss_dssp BCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEE-------ECTTS
T ss_pred CCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEE-------EcCCC
Confidence 0 01345799999988886 45566666689999887654433211 0 123455554 33333
Q ss_pred CeEEEEEeCCeEEEEcC---------------CCCceEEEEe-CCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCC
Q 001349 918 AGIKVHLRNGKTKLLNS---------------SKYPKCLALV-QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKA 981 (1094)
Q Consensus 918 ~~l~~~~~~g~i~l~~~---------------~~~v~~l~~s-~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~ 981 (1094)
. +-+++.++.+..++. ...|.++... ++.+.+|+.++.+..||..+++....... ....
T Consensus 375 ~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~----~~~~ 449 (781)
T 3v9f_A 375 K-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELE----KNEL 449 (781)
T ss_dssp C-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCST----TTCC
T ss_pred C-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccC----CCCC
Confidence 3 233333332332221 2456777776 57899999888899999887765422110 1234
Q ss_pred CCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-C-----CCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCc
Q 001349 982 NPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-T-----LSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQI 1054 (1094)
Q Consensus 982 ~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~-----~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~ 1054 (1094)
..|.++...+++.+.++.. . -+..||..+++...... . ...|.++..+++ .++.|+.++-|..||..+++
T Consensus 450 ~~v~~i~~d~~g~lwigt~-~--Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~ 526 (781)
T 3v9f_A 450 LDVRVFYEDKNKKIWIGTH-A--GVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQL 526 (781)
T ss_dssp CCEEEEEECTTSEEEEEET-T--EEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCE
T ss_pred CeEEEEEECCCCCEEEEEC-C--ceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCe
Confidence 5789998888777666543 3 59999988765433322 1 356889988877 78888875568889987765
Q ss_pred EEEEeccc---CCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1055 RIETLQTG---TSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1055 ~~~~l~~~---h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
. ..+... ....|.++...++|.+.++ +.+|.|..||
T Consensus 527 ~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d 565 (781)
T 3v9f_A 527 V-RKFNQYEGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPS 565 (781)
T ss_dssp E-EEECTTTTCSCSCEEEEEECTTSCEEEE-ETTEEEEESC
T ss_pred E-EEccCCCCCCCCeeEEEEECCCCCEEEE-ECCCceEEEC
Confidence 3 333211 2347899999888876554 4466546665
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0013 Score=72.79 Aligned_cols=228 Identities=11% Similarity=0.024 Sum_probs=126.1
Q ss_pred CcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCC--cEEEEECCCCce
Q 001349 814 GKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDK--TARVWSIGNEEI 889 (1094)
Q Consensus 814 ~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~Dg--tI~vWdi~~~~~ 889 (1094)
.....++|+++ ++++...++.|..||..++ ....+. ....+..+++.++|+++++..... .|..+|..+++.
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~---~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~ 107 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN---QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV 107 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC---EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc---eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE
Confidence 45778999886 5555557899999998765 222222 235688999999999766654432 366677777754
Q ss_pred EEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEE-cCCeEEEEECCCCce-
Q 001349 890 HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGC-QDGAIQEIDLATGTF- 967 (1094)
Q Consensus 890 ~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs-~Dg~I~iwDl~~~~~- 967 (1094)
..+...........+ ++.+ ++.+++.. .++.|..+|..++..
T Consensus 108 ~~~~~~~~~~~~~g~-------~~~~-----------------------------~~~~~v~d~~~g~i~~~d~~~~~~~ 151 (306)
T 2p4o_A 108 ETLLTLPDAIFLNGI-------TPLS-----------------------------DTQYLTADSYRGAIWLIDVVQPSGS 151 (306)
T ss_dssp EEEEECTTCSCEEEE-------EESS-----------------------------SSEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEEeCCCccccCcc-------cccC-----------------------------CCcEEEEECCCCeEEEEeCCCCcEe
Confidence 333222110000111 1111 12233333 467788888765432
Q ss_pred eEEeccc-e--eecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCC-CeE--EEEecCCCCEEEEEEeCC-EEEEE-
Q 001349 968 ATIQTGH-R--KLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN-YNM--VGSLPTLSEVRAMVVSSE-LVYLG- 1039 (1094)
Q Consensus 968 ~~~~~~~-~--~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~-~~~--~~~~~~~~~v~~l~~spd-~l~sg- 1039 (1094)
+...... . ...+.-...+.+ ++++.++..+....+.|..||+.. +.. ...+........++++++ .++++
T Consensus 152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~ 229 (306)
T 2p4o_A 152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGAT 229 (306)
T ss_dssp EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEEC
T ss_pred EEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEe
Confidence 1100000 0 001111234455 666654444444445999999864 321 122221234566888887 44544
Q ss_pred EcCCeEEEEECCCCcEEE--EecccCCcceEEEEEc---CCCCEEEEEeCC
Q 001349 1040 CKGGTVEIWDQKRQIRIE--TLQTGTSGKVQCMALD---DNEEFLVIGTSD 1085 (1094)
Q Consensus 1040 s~dg~I~vwd~~t~~~~~--~l~~~h~~~I~~l~~S---pdg~~L~sgs~D 1085 (1094)
...+.|.+||.. ++... .+. ......++++|. ||++.|+.++..
T Consensus 230 ~~~~~V~~~~~~-G~~~~~~~~~-~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 230 HIYNSVVRIAPD-RSTTIIAQAE-QGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp BTTCCEEEECTT-CCEEEEECGG-GTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCCCeEEEECCC-CCEEEEeecc-cccCCceEEEEecccCCCCEEEEECCC
Confidence 456889999975 65432 232 223468999998 898887766653
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0007 Score=82.09 Aligned_cols=256 Identities=15% Similarity=0.153 Sum_probs=140.8
Q ss_pred EEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCC----CeE-EEEEec---CCC-EEEEEe------CCCcEEEEE
Q 001349 819 IACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTK----AVT-GLAILQ---SGE-MLYSGS------LDKTARVWS 883 (1094)
Q Consensus 819 l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~----~V~-sv~fsp---dg~-~LaSgs------~DgtI~vWd 883 (1094)
+++..+.++.++.|+.|..+|..+| +.+........ .+. +-.+.. +|+ .+++++ .+|.|.-+|
T Consensus 113 ~a~~~~~v~~~t~dg~l~AlD~~TG--~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD 190 (582)
T 1flg_A 113 AAIYGDKVFFGTLDASVVALNKNTG--KVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARD 190 (582)
T ss_dssp CEEETTEEEEEETTTEEEEEESSSC--CEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEEC
T ss_pred cEEECCEEEEEeCCCEEEEEECCCC--CEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEE
Confidence 3456678999999999999999999 56655443220 111 111111 233 566655 378999999
Q ss_pred CCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEc--------------CC-CC-ceEEEEe--C
Q 001349 884 IGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN--------------SS-KY-PKCLALV--Q 945 (1094)
Q Consensus 884 i~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~--------------~~-~~-v~~l~~s--~ 945 (1094)
..+|+..-.... .. +. +.|++........+.....|. .. .. -..++++ .
T Consensus 191 ~~tG~~~W~~~~--~~----~~-------~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~ 257 (582)
T 1flg_A 191 PDTGEEIWMRPF--VE----GH-------MGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAET 257 (582)
T ss_dssp TTTCCEEEEEES--ST----TC-------EEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTT
T ss_pred CCCCCEEeecCC--Cc----cc-------cccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCC
Confidence 999874332211 10 00 122211111110000000000 00 00 0123333 2
Q ss_pred CEEEEEEc--------------------C----CeEEEEECCCCceeEEeccce-e---ecCCCCCeEEEEEe-CCc---
Q 001349 946 GKVYCGCQ--------------------D----GAIQEIDLATGTFATIQTGHR-K---LLGKANPVHALQVH-NGL--- 993 (1094)
Q Consensus 946 ~~l~sgs~--------------------D----g~I~iwDl~~~~~~~~~~~~~-~---~~~h~~~V~sl~fs-~~~--- 993 (1094)
+.+++++. | +.|..+|..+|+....++... . +.+...++. +... .++
T Consensus 258 g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~ 336 (582)
T 1flg_A 258 NTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIV 336 (582)
T ss_dssp TEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEE
T ss_pred CEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEE
Confidence 55666653 2 689999999999886543210 0 001112222 2222 355
Q ss_pred cEEEEEECCCCEEEEEECCCCeEEEEecCCC---CE-------------------------------------------E
Q 001349 994 VYTASTSLDGAAVKMWSTSNYNMVGSLPTLS---EV-------------------------------------------R 1027 (1094)
Q Consensus 994 ~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~---~v-------------------------------------------~ 1027 (1094)
.+++.++.+| .+.++|..+|+.+..+.... .. .
T Consensus 337 ~~v~~~~~~G-~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~ 415 (582)
T 1flg_A 337 KATAHADRNG-FFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWN 415 (582)
T ss_dssp EEEEEECTTS-EEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSS
T ss_pred EEEEEECCCc-eEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCC
Confidence 3667777776 99999999999887665221 00 1
Q ss_pred EEEEeCC--EEEEEE---------------------------------cCCeEEEEECCCCcEEEEecccCCcceEEEEE
Q 001349 1028 AMVVSSE--LVYLGC---------------------------------KGGTVEIWDQKRQIRIETLQTGTSGKVQCMAL 1072 (1094)
Q Consensus 1028 ~l~~spd--~l~sgs---------------------------------~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~ 1072 (1094)
.++++|+ .+++.. .+|.|..||+.+++.+.....+. .+..-..
T Consensus 416 ~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~ 493 (582)
T 1flg_A 416 PMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL--PLWAGVL 493 (582)
T ss_dssp CCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS--CCCSCCE
T ss_pred CceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC--CCcccce
Confidence 3455665 333322 25889999999999887775322 2222222
Q ss_pred cCCCCEEEEEeCCCcEEEEeC
Q 001349 1073 DDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1073 Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
...+.+++.|+.||.++.||.
T Consensus 494 ~tagglvf~g~~dg~l~A~D~ 514 (582)
T 1flg_A 494 ATAGNLVFTGTGDGYFKAFDA 514 (582)
T ss_dssp EETTTEEEEECTTSEEEEEET
T ss_pred EeCCCEEEEECCCCcEEEEEC
Confidence 234678888999999999986
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00037 Score=74.40 Aligned_cols=188 Identities=11% Similarity=0.158 Sum_probs=121.6
Q ss_pred eEEEecccCCC--eEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEE
Q 001349 847 LIQQIREHTKA--VTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHL 924 (1094)
Q Consensus 847 ~~~~l~~H~~~--V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~ 924 (1094)
.+.++ .|... ...+.|+ ++.+.++.+.+|.|+++|+.+++..... . .......- ..++|.
T Consensus 45 Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l--~~~~FgeG-------it~~g~------ 106 (268)
T 3nok_A 45 IIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R--LGNIFAEG-------LASDGE------ 106 (268)
T ss_dssp EEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E--CTTCCEEE-------EEECSS------
T ss_pred EEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C--CCCcceeE-------EEEeCC------
Confidence 44555 35433 4688887 4677788888899999999998732222 1 11111111 222332
Q ss_pred eCCeEEEEcCCCCceEEEEeCCEEEE-EEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC
Q 001349 925 RNGKTKLLNSSKYPKCLALVQGKVYC-GCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG 1003 (1094)
Q Consensus 925 ~~g~i~l~~~~~~v~~l~~s~~~l~s-gs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg 1003 (1094)
+++. .-.++.+.+||..+.+.+..+.. .++. ..+++. +..+..+..+
T Consensus 107 ----------------------~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~----~~eG---wGLt~D--g~~L~vSdGs- 154 (268)
T 3nok_A 107 ----------------------RLYQLTWTEGLLFTWSGMPPQRERTTRY----SGEG---WGLCYW--NGKLVRSDGG- 154 (268)
T ss_dssp ----------------------CEEEEESSSCEEEEEETTTTEEEEEEEC----SSCC---CCEEEE--TTEEEEECSS-
T ss_pred ----------------------EEEEEEccCCEEEEEECCcCcEEEEEeC----CCce---eEEecC--CCEEEEECCC-
Confidence 2333 33578899999999998865442 1221 344443 3333333334
Q ss_pred CEEEEEECCCCeEEEEecC---C---CCEEEEEEeCCEEEEEE-cCCeEEEEECCCCcEEEEeccc------------CC
Q 001349 1004 AAVKMWSTSNYNMVGSLPT---L---SEVRAMVVSSELVYLGC-KGGTVEIWDQKRQIRIETLQTG------------TS 1064 (1094)
Q Consensus 1004 ~~I~iwd~~~~~~~~~~~~---~---~~v~~l~~spd~l~sgs-~dg~I~vwd~~t~~~~~~l~~~------------h~ 1064 (1094)
..|.++|..+.+.+.++.- + ..++.+.|....+++.. .++.|.+.|..+++.+..+... ..
T Consensus 155 ~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~ 234 (268)
T 3nok_A 155 TMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPE 234 (268)
T ss_dssp SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTT
T ss_pred CEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcC
Confidence 4999999999999888872 1 34577888866777766 5789999999999999888532 11
Q ss_pred cceEEEEEcCCCCEEEEEeC
Q 001349 1065 GKVQCMALDDNEEFLVIGTS 1084 (1094)
Q Consensus 1065 ~~I~~l~~Spdg~~L~sgs~ 1084 (1094)
...+.|||+|+++.|+..+.
T Consensus 235 ~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 235 AVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp CCEEEEEECTTTCCEEEEET
T ss_pred CceEEEEEcCCCCEEEEeCC
Confidence 35799999998766655553
|
| >2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.07 E-value=3.1e-06 Score=73.22 Aligned_cols=50 Identities=14% Similarity=0.370 Sum_probs=42.2
Q ss_pred ceeccCccccc--cCcEEcCCc-----ccccHHhHHHHHHhCC-CCCCCCCcCCCCCC
Q 001349 163 DFVCPITTHIF--DDPVTLETG-----QTYERRAIQEWIERGN-SSCPITRQKLSSTK 212 (1094)
Q Consensus 163 ~~~CpIc~~~~--~dPv~~~cG-----htfc~~ci~~~~~~~~-~~CP~c~~~~~~~~ 212 (1094)
+..|+||++-+ .+|++++|+ |.|-..||.+|+.... ..||+||..+....
T Consensus 15 ~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 15 QDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp SCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 67899999877 478999996 9999999999998743 57999999886544
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0057 Score=77.01 Aligned_cols=290 Identities=11% Similarity=0.080 Sum_probs=169.0
Q ss_pred cEEEEeeCCCCeEEEeCCcce-eecc--------cCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEec---
Q 001349 786 VKVLSNGHDSSADFWNHRELV-HVDS--------SENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIR--- 852 (1094)
Q Consensus 786 ~~l~s~s~dg~I~vWd~~~~~-~~~~--------~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~--- 852 (1094)
..+..+..++-+..||..... ..+. .....|.++...++ .|..|+.+ -+.+||..++.........
T Consensus 174 g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~ 252 (781)
T 3v9f_A 174 GKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNI 252 (781)
T ss_dssp TEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC--------
T ss_pred CCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCcc
Confidence 345556556457778765321 1111 12356899988775 66667766 6889998877322221111
Q ss_pred --ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEe-------c------ccCccceeeeecCceEEEeeCC
Q 001349 853 --EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQV-------H------DIKDQIQNLAVSNSILCFIPQG 917 (1094)
Q Consensus 853 --~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~-------~------~~~~~V~~v~~~~~~~~fspdg 917 (1094)
-....|.++...++|.+. .|+..+-|.++|..++....... . -....|.++. ..++|
T Consensus 253 ~~l~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~-------~D~~g 324 (781)
T 3v9f_A 253 HGALSSYIFSIKQLKDNKLW-IATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIF-------QDSFN 324 (781)
T ss_dssp ---CCCCEEEEEECTTSEEE-EEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEE-------ECSSC
T ss_pred ccccCceEEEEEECCCCCEE-EEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEE-------EeCCC
Confidence 124569999988877654 46664558899988765332221 0 0123344544 34444
Q ss_pred CeEEEEEeCCeEEEEcC---------------------CCCceEEEEeC-CEEEEEEcCCeEEEEECCCCceeEEeccce
Q 001349 918 AGIKVHLRNGKTKLLNS---------------------SKYPKCLALVQ-GKVYCGCQDGAIQEIDLATGTFATIQTGHR 975 (1094)
Q Consensus 918 ~~l~~~~~~g~i~l~~~---------------------~~~v~~l~~s~-~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~ 975 (1094)
. +-++..++.+..++. ...|.++...+ +.+.+|+.++.|..||..++..... ..
T Consensus 325 ~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~-~~-- 400 (781)
T 3v9f_A 325 N-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYN-KE-- 400 (781)
T ss_dssp C-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----
T ss_pred C-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEc-cC--
Confidence 3 333443433333321 23467777764 7899999888899999876543321 10
Q ss_pred eecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec---CCCCEEEEEEeCC-EEEEEEcCCeEEEEECC
Q 001349 976 KLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQK 1051 (1094)
Q Consensus 976 ~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~---~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~ 1051 (1094)
........|.++...+++.+.+.. .++ -+..||..+++...... ....|.++...++ .++.|+. +-|..||..
T Consensus 401 ~~~~~~~~v~~i~~d~~g~lWigt-~~~-Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~ 477 (781)
T 3v9f_A 401 NRELLSNSVLCSLKDSEGNLWFGT-YLG-NISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLA 477 (781)
T ss_dssp ---CCCSBEEEEEECTTSCEEEEE-TTE-EEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESS
T ss_pred CCCCCCcceEEEEECCCCCEEEEe-ccC-CEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCC
Confidence 011234578899888776655543 333 68899987775433221 3467899988876 7888887 569999988
Q ss_pred CCcEEEEeccc----CCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1052 RQIRIETLQTG----TSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1052 t~~~~~~l~~~----h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
+++........ ....|.++...++|.+.+....+| |..||
T Consensus 478 ~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~ 521 (781)
T 3v9f_A 478 SKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYT 521 (781)
T ss_dssp SSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEEC
T ss_pred CCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEe
Confidence 76643332111 135799999999887655443344 55565
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0019 Score=68.83 Aligned_cols=182 Identities=12% Similarity=0.029 Sum_probs=112.7
Q ss_pred CcEEEEEEeCC-EEEEEECCC--eEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCce
Q 001349 814 GKVLSIACFRD-KIFSGHSDG--TIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGS-LDKTARVWSIGNEEI 889 (1094)
Q Consensus 814 ~~V~~l~fspd-~LaSgs~Dg--~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs-~DgtI~vWdi~~~~~ 889 (1094)
.-...+.|+.+ ++.+.+.+| .|+++|+.++ +.+..+.-. .......+.++++.|+... .++.+.+||..+.+.
T Consensus 43 ~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tg--kv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~ 119 (262)
T 3nol_A 43 AFTEGFFYRNGYFYESTGLNGRSSIRKVDIESG--KTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQ 119 (262)
T ss_dssp CEEEEEEEETTEEEEEEEETTEEEEEEECTTTC--CEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCE
T ss_pred cccceEEEECCEEEEECCCCCCceEEEEECCCC--cEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcE
Confidence 34578899966 555556655 8999999999 556655432 3343333344455666555 478999999998752
Q ss_pred EEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeE
Q 001349 890 HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFAT 969 (1094)
Q Consensus 890 ~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~ 969 (1094)
. ....... ....+++||+ .++....++.|.++|..+.+...
T Consensus 120 ~--~ti~~~~---------eG~glt~dg~----------------------------~L~~SdGs~~i~~iDp~T~~v~~ 160 (262)
T 3nol_A 120 V--RSFNYDG---------EGWGLTHNDQ----------------------------YLIMSDGTPVLRFLDPESLTPVR 160 (262)
T ss_dssp E--EEEECSS---------CCCCEEECSS----------------------------CEEECCSSSEEEEECTTTCSEEE
T ss_pred E--EEEECCC---------CceEEecCCC----------------------------EEEEECCCCeEEEEcCCCCeEEE
Confidence 2 2221111 1111444444 35555557789999999988775
Q ss_pred EeccceeecCCC-CCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecC-------------CCCEEEEEEeCC-
Q 001349 970 IQTGHRKLLGKA-NPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT-------------LSEVRAMVVSSE- 1034 (1094)
Q Consensus 970 ~~~~~~~~~~h~-~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~-------------~~~v~~l~~spd- 1034 (1094)
..... ..+.. ..++.+.|. ++...+..-.+ ..|.+.|..+++.+..+.- ....++++++|+
T Consensus 161 ~I~V~--~~g~~~~~lNELe~~-~G~lyan~w~~-~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~ 236 (262)
T 3nol_A 161 TITVT--AHGEELPELNELEWV-DGEIFANVWQT-NKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEH 236 (262)
T ss_dssp EEECE--ETTEECCCEEEEEEE-TTEEEEEETTS-SEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTT
T ss_pred EEEec--cCCccccccceeEEE-CCEEEEEEccC-CeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCC
Confidence 43221 11111 345567777 44444544344 4999999999999888863 135689999987
Q ss_pred -EEEEEEc
Q 001349 1035 -LVYLGCK 1041 (1094)
Q Consensus 1035 -~l~sgs~ 1041 (1094)
.+++.+.
T Consensus 237 ~~lfVTGK 244 (262)
T 3nol_A 237 HRLFVTGK 244 (262)
T ss_dssp TEEEEEET
T ss_pred CEEEEECC
Confidence 5555554
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0031 Score=76.45 Aligned_cols=265 Identities=13% Similarity=0.070 Sum_probs=148.1
Q ss_pred eCCEEEEEEC-CCeEEEEec-CCCcceeEEEecccCCC-----------eEEEEEecCCCE----EEEEeCCCcEEEEEC
Q 001349 822 FRDKIFSGHS-DGTIKVWTG-RGSILHLIQQIREHTKA-----------VTGLAILQSGEM----LYSGSLDKTARVWSI 884 (1094)
Q Consensus 822 spd~LaSgs~-Dg~I~vWd~-~t~~~~~~~~l~~H~~~-----------V~sv~fspdg~~----LaSgs~DgtI~vWdi 884 (1094)
..+.++.++. ++.|.-+|. .++ +.+..+...... ...++++|.+.. ++.++.|+.+.-+|.
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG--~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa 138 (599)
T 1w6s_A 61 VDGKMYIHTSFPNNTFALGLDDPG--TILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNA 138 (599)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTT--SEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEET
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCC--cEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEEC
Confidence 3568888887 899999999 899 666666432210 123556544444 888899999999999
Q ss_pred CCCceEEEEeccc-C--cccee-eeecCceEEEee-------CCCeEEEEEeCCeEEEEc--CCCCc-------------
Q 001349 885 GNEEIHCVQVHDI-K--DQIQN-LAVSNSILCFIP-------QGAGIKVHLRNGKTKLLN--SSKYP------------- 938 (1094)
Q Consensus 885 ~~~~~~~~~~~~~-~--~~V~~-v~~~~~~~~fsp-------dg~~l~~~~~~g~i~l~~--~~~~v------------- 938 (1094)
.+|+..-...... . ..+.+ -.+....+.+.. +|...+....+|.. +|. .....
T Consensus 139 ~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~-~W~~~~~~~~~~~~~~p~~~~~~ 217 (599)
T 1w6s_A 139 ETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQ-VWRAYATGPDKDLLLASDFNIKN 217 (599)
T ss_dssp TTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCE-EEEEESSSCHHHHTBCTTTTTTC
T ss_pred CCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcE-EEEEcCCCCcccccccccccccc
Confidence 9997432222111 0 01111 011111111211 12222222122322 221 11110
Q ss_pred --------------------------eEEEE--eCCEEEEEEcCC----------------eEEEEECCCCceeEEeccc
Q 001349 939 --------------------------KCLAL--VQGKVYCGCQDG----------------AIQEIDLATGTFATIQTGH 974 (1094)
Q Consensus 939 --------------------------~~l~~--s~~~l~sgs~Dg----------------~I~iwDl~~~~~~~~~~~~ 974 (1094)
..+++ ..+.++.++.++ .|..+|..+|+....++..
T Consensus 218 ~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~ 297 (599)
T 1w6s_A 218 PHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT 297 (599)
T ss_dssp GGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred ccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecC
Confidence 01233 346788887663 8999999999988654321
Q ss_pred ee----ecCCCCCeEEEEEe-CCc---cEEEEEECCCCEEEEEECCCCeEEEEecCCC--------------CE------
Q 001349 975 RK----LLGKANPVHALQVH-NGL---VYTASTSLDGAAVKMWSTSNYNMVGSLPTLS--------------EV------ 1026 (1094)
Q Consensus 975 ~~----~~~h~~~V~sl~fs-~~~---~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~--------------~v------ 1026 (1094)
.. +.....++. +... .++ ..++.++.+| .+.++|..+|+.+....... ++
T Consensus 298 ~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G-~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~ 375 (599)
T 1w6s_A 298 PHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNG-IVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYG 375 (599)
T ss_dssp TTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTS-EEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGC
T ss_pred CCccccccCCCccEE-EeccccCCcEEEEEEEECCCc-EEEEEECCCCCEeecccccCCcccccccccCCCceeeccccC
Confidence 10 001112222 2222 455 4666677776 99999999999887664110 11
Q ss_pred --------------------EEEEEeCC--EEEEE---------------------------------E------cCCeE
Q 001349 1027 --------------------RAMVVSSE--LVYLG---------------------------------C------KGGTV 1045 (1094)
Q Consensus 1027 --------------------~~l~~spd--~l~sg---------------------------------s------~dg~I 1045 (1094)
..++++|+ .+++. + .+|.|
T Consensus 376 ~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l 455 (599)
T 1w6s_A 376 TRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQI 455 (599)
T ss_dssp CCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEE
T ss_pred CCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeE
Confidence 13456655 33221 1 34789
Q ss_pred EEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1046 EIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1046 ~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
..||+.+++.+.....+. ++..-.+...+.+++.++.||.++.||.
T Consensus 456 ~A~D~~tG~~~W~~~~~~--~~~~g~~~tagg~vf~gt~dg~l~A~D~ 501 (599)
T 1w6s_A 456 KAYNAITGDYKWEKMERF--AVWGGTMATAGDLVFYGTLDGYLKARDS 501 (599)
T ss_dssp EEECTTTCCEEEEEEESS--CCCSBCEEETTTEEEEECTTSEEEEEET
T ss_pred EEEECCCCCEEeEecCCC--CccCcceEecCCEEEEECCCCeEEEEEC
Confidence 999999999888774322 2222123335778888999999999985
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=0.008 Score=64.61 Aligned_cols=214 Identities=11% Similarity=0.012 Sum_probs=119.3
Q ss_pred CeEEEEecCCCccee---EEEecccCCCeEEEEEecCCCEEE-EEeCCCcEEEEECCCCceEEEEecccCccceeeeecC
Q 001349 833 GTIKVWTGRGSILHL---IQQIREHTKAVTGLAILQSGEMLY-SGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSN 908 (1094)
Q Consensus 833 g~I~vWd~~t~~~~~---~~~l~~H~~~V~sv~fspdg~~La-Sgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~ 908 (1094)
+.|+.+|+.+..... ...+......+..++|++++..|+ +-..++.|..++.+++....+.... ......
T Consensus 10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~-~~~p~~----- 83 (267)
T 1npe_A 10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD-LGSPEG----- 83 (267)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT-CCCEEE-----
T ss_pred CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECC-CCCccE-----
Confidence 478889987653210 111222234578999999665555 4445789999998775422211100 011222
Q ss_pred ceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEE-EcCCeEEEEECCCCceeEEeccceeecCCCCCeEEE
Q 001349 909 SILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCG-CQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHAL 987 (1094)
Q Consensus 909 ~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sg-s~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl 987 (1094)
+++.+++. .++.+ ...+.|.++|+......... .........+
T Consensus 84 --ia~d~~~~----------------------------~lyv~d~~~~~I~~~~~~g~~~~~~~------~~~~~~P~~i 127 (267)
T 1npe_A 84 --IALDHLGR----------------------------TIFWTDSQLDRIEVAKMDGTQRRVLF------DTGLVNPRGI 127 (267)
T ss_dssp --EEEETTTT----------------------------EEEEEETTTTEEEEEETTSCSCEEEE------CSSCSSEEEE
T ss_pred --EEEEecCC----------------------------eEEEEECCCCEEEEEEcCCCCEEEEE------ECCCCCccEE
Confidence 22454443 33333 34567888887643322111 1112456889
Q ss_pred EEeCC-ccEEEEEEC-CCCEEEEEECCCCeEEEEec--CCCCEEEEEEeCC--EEEEEE-cCCeEEEEECCCCcEEEEec
Q 001349 988 QVHNG-LVYTASTSL-DGAAVKMWSTSNYNMVGSLP--TLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQKRQIRIETLQ 1060 (1094)
Q Consensus 988 ~fs~~-~~~las~s~-Dg~~I~iwd~~~~~~~~~~~--~~~~v~~l~~spd--~l~sgs-~dg~I~vwd~~t~~~~~~l~ 1060 (1094)
+++++ +.+.++... +.+.|..++.... ....+. .......++++++ .++.+. ..+.|.++|.........+.
T Consensus 128 ~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~ 206 (267)
T 1npe_A 128 VTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE 206 (267)
T ss_dssp EEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE
T ss_pred EEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec
Confidence 99985 444444332 1248888887543 222232 3356889999985 555554 56899999998655443332
Q ss_pred ccCCcceEEEEEcCCCCEEEEEe-CCCcEEEEeC
Q 001349 1061 TGTSGKVQCMALDDNEEFLVIGT-SDGRIQAWGL 1093 (1094)
Q Consensus 1061 ~~h~~~I~~l~~Spdg~~L~sgs-~DG~I~iWdl 1093 (1094)
+ ......+++. +..|+.+. .++.|.++|.
T Consensus 207 -~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~ 236 (267)
T 1npe_A 207 -G-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDL 236 (267)
T ss_dssp -C-CCSEEEEEEE--TTEEEEEETTTTEEEEEET
T ss_pred -C-CCCceEEEEe--CCEEEEEECCCCeEEEEeC
Confidence 2 2345677664 44555444 5678888875
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00035 Score=82.98 Aligned_cols=202 Identities=12% Similarity=0.093 Sum_probs=119.6
Q ss_pred CCCEEEEEeC-CCcEEEEECCCCceEEEEecccCccceeeeecCceEEE-e-eCCCeEEEEEeCCeEEEEcCCCCceEEE
Q 001349 866 SGEMLYSGSL-DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCF-I-PQGAGIKVHLRNGKTKLLNSSKYPKCLA 942 (1094)
Q Consensus 866 dg~~LaSgs~-DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~f-s-pdg~~l~~~~~~g~i~l~~~~~~v~~l~ 942 (1094)
||++++.... ++.|.+.|+.+.+...+...+.......+. + + |+++++.+...... -+-+....+.
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~-------~~~~p~~~~v~~~~~~~~-p~~~dg~~l~--- 168 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLR-------PQKWPRSNYVFCNGEDET-PLVNDGTNME--- 168 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEE-------ECCSSBCSEEEEEECSCE-ESSCSSSSTT---
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCccee-------eeecCCCcEEEEeccccc-ccCCCCcccc---
Confidence 7888877665 456999999997533222333333444444 5 4 88888766542210 0000000000
Q ss_pred EeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC-------------------
Q 001349 943 LVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG------------------- 1003 (1094)
Q Consensus 943 ~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg------------------- 1003 (1094)
...-.++.+.++|..+.+...... ..+ ....+++++++.++.+++.+.
T Consensus 169 ------~~~~~~~~vtvID~~t~~v~~qI~----Vgg---~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V 235 (595)
T 1fwx_A 169 ------DVANYVNVFTAVDADKWEVAWQVL----VSG---NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVV 235 (595)
T ss_dssp ------CGGGEEEEEEEEETTTTEEEEEEE----ESS---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEE
T ss_pred ------cccccCceEEEEECCCCeEEEEEE----eCC---CccceEECCCCCEEEEEecCcccCcchhhccccccceEEE
Confidence 000123456666766665543211 111 223455666666666665442
Q ss_pred ------------------CEEEEEECCC--CeE-EEEecCCCCEEEEEEeCC--EEEE-EEcCCeEEEEECCCCc-----
Q 001349 1004 ------------------AAVKMWSTSN--YNM-VGSLPTLSEVRAMVVSSE--LVYL-GCKGGTVEIWDQKRQI----- 1054 (1094)
Q Consensus 1004 ------------------~~I~iwd~~~--~~~-~~~~~~~~~v~~l~~spd--~l~s-gs~dg~I~vwd~~t~~----- 1054 (1094)
+.|.+.|..+ ++. +..+.-.....++.++|| ++++ +-.+++|.++|+.+.+
T Consensus 236 ~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~ 315 (595)
T 1fwx_A 236 FNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYE 315 (595)
T ss_dssp EEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHS
T ss_pred eeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccccc
Confidence 1478888887 555 666665667778999999 4444 4568999999999653
Q ss_pred -------EEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1055 -------RIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1055 -------~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
....+. -......++|+|||...++.--|+.|.+||+
T Consensus 316 ~l~~~~~v~~~v~--vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi 359 (595)
T 1fwx_A 316 NADPRSAVVAEPE--LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNI 359 (595)
T ss_dssp CCCGGGGEEECCB--CCSCEEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred ccCcccceEEEcC--CCCCcceEEECCCCeEEEEEecCCcEEEEEh
Confidence 344443 2346899999999944445667999999986
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0096 Score=68.14 Aligned_cols=225 Identities=8% Similarity=-0.006 Sum_probs=128.4
Q ss_pred CCCCeEEEeCCc-ceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCC-
Q 001349 793 HDSSADFWNHRE-LVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSG- 867 (1094)
Q Consensus 793 ~dg~I~vWd~~~-~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg- 867 (1094)
....|+.++... ....+......+..++|++. ++++-...+.|..|+..++. ....+.........+++.+.+
T Consensus 94 ~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~--~~~~~~~~~~~p~glavd~~~g 171 (386)
T 3v65_B 94 NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN--VEEVVSTGLESPGGLAVDWVHD 171 (386)
T ss_dssp CBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC--EEEEECSSCSCCCCEEEETTTT
T ss_pred cCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC--cEEEEeCCCCCccEEEEEeCCC
Confidence 345677777762 22223333456889999963 55555677899999998762 222233233455778898754
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCE
Q 001349 868 EMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGK 947 (1094)
Q Consensus 868 ~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~ 947 (1094)
.+.++-...+.|.+.+++......+.... -.....+ ++.|.+..+.+..
T Consensus 172 ~lY~~d~~~~~I~~~~~dg~~~~~l~~~~-l~~P~gi-------avdp~~g~ly~td----------------------- 220 (386)
T 3v65_B 172 KLYWTDSGTSRIEVANLDGAHRKVLLWQS-LEKPRAI-------ALHPMEGTIYWTD----------------------- 220 (386)
T ss_dssp EEEEEETTTTEEEECBTTSCSCEEEECSS-CSCEEEE-------EEETTTTEEEEEE-----------------------
T ss_pred eEEEEcCCCCeEEEEeCCCCceEEeecCC-CCCCcEE-------EEEcCCCeEEEec-----------------------
Confidence 44455556678888888764322222111 1112222 3555544332222
Q ss_pred EEEEEcC-CeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCC
Q 001349 948 VYCGCQD-GAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSE 1025 (1094)
Q Consensus 948 l~sgs~D-g~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~ 1025 (1094)
..+ +.|..+++......... ...-...+.+++++++..+..+....+.|..+|+........+. ....
T Consensus 221 ----~~~~~~I~r~~~dG~~~~~~~------~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~ 290 (386)
T 3v65_B 221 ----WGNTPRIEASSMDGSGRRIIA------DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPH 290 (386)
T ss_dssp ----CSSSCEEEEEETTSCSCEEEE------CSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSS
T ss_pred ----cCCCCEEEEEeCCCCCcEEEE------ECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCC
Confidence 122 55666666543222111 11223568899996555444444444589999986543332233 3456
Q ss_pred EEEEEEeCCEEEEE-EcCCeEEEEECCCCcEEEEec
Q 001349 1026 VRAMVVSSELVYLG-CKGGTVEIWDQKRQIRIETLQ 1060 (1094)
Q Consensus 1026 v~~l~~spd~l~sg-s~dg~I~vwd~~t~~~~~~l~ 1060 (1094)
..++++..+.++.+ ...+.|..+|..+|+....+.
T Consensus 291 P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 291 PFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred ceEEEEECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 78888877755544 467889999977777666663
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.02 Score=64.57 Aligned_cols=223 Identities=9% Similarity=-0.013 Sum_probs=127.3
Q ss_pred CCCeEEEeCCc-ceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecC-CC
Q 001349 794 DSSADFWNHRE-LVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS-GE 868 (1094)
Q Consensus 794 dg~I~vWd~~~-~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspd-g~ 868 (1094)
.+.|+..+... ...........+..++|++. ++++-...+.|..++..++. ....+.........+++.+. +.
T Consensus 52 ~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~--~~~~~~~~~~~p~glavd~~~g~ 129 (349)
T 3v64_C 52 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN--VEEVVSTGLESPGGLAVDWVHDK 129 (349)
T ss_dssp BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECSSCSCCCEEEEETTTTE
T ss_pred ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCC--ceEEEeCCCCCccEEEEecCCCe
Confidence 34566666652 22222233455889999963 55555577899999998763 22223323345678999875 44
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEE
Q 001349 869 MLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKV 948 (1094)
Q Consensus 869 ~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l 948 (1094)
+.++-...+.|.+.+.+......+.... -.....+ ++.|.+..+.+..
T Consensus 130 ly~~d~~~~~I~~~~~dG~~~~~l~~~~-l~~P~~i-------avdp~~g~ly~td------------------------ 177 (349)
T 3v64_C 130 LYWTDSGTSRIEVANLDGAHRKVLLWQS-LEKPRAI-------ALHPMEGTIYWTD------------------------ 177 (349)
T ss_dssp EEEEETTTTEEEEEETTSCSCEEEECTT-CSCEEEE-------EEETTTTEEEEEE------------------------
T ss_pred EEEEcCCCCeEEEEcCCCCceEEEEeCC-CCCcceE-------EEecCcCeEEEec------------------------
Confidence 5555566788999998765322222111 1112223 3555444332222
Q ss_pred EEEEcC-CeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCE
Q 001349 949 YCGCQD-GAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEV 1026 (1094)
Q Consensus 949 ~sgs~D-g~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v 1026 (1094)
..+ +.|..+++........ ....-...+.+++++++..+..+....+.|..+|+........+. .....
T Consensus 178 ---~~~~~~I~r~~~dG~~~~~~------~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P 248 (349)
T 3v64_C 178 ---WGNTPRIEASSMDGSGRRII------ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHP 248 (349)
T ss_dssp ---CSSSCEEEEEETTSCSCEES------CCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSE
T ss_pred ---cCCCCEEEEEeCCCCCcEEE------EECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCc
Confidence 222 5666666654322211 111224578999997555444444444589999986543322232 34567
Q ss_pred EEEEEeCCEEEEEE-cCCeEEEEECCCCcEEEEe
Q 001349 1027 RAMVVSSELVYLGC-KGGTVEIWDQKRQIRIETL 1059 (1094)
Q Consensus 1027 ~~l~~spd~l~sgs-~dg~I~vwd~~t~~~~~~l 1059 (1094)
.++++..+.++.+. ..+.|..+|..+|+....+
T Consensus 249 ~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 249 FAITVFEDSLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp EEEEEETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred eEEEEECCEEEEecCCCCeEEEEEccCCCccEEe
Confidence 88888777655554 5688999997777655555
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00076 Score=83.27 Aligned_cols=258 Identities=9% Similarity=-0.026 Sum_probs=142.8
Q ss_pred EEEEeC-C--EEEEEECCC-----------eEEEEecCCCcceeEEEecc-cCCCeEEEEEecCCCEEEEEeC-CCcEEE
Q 001349 818 SIACFR-D--KIFSGHSDG-----------TIKVWTGRGSILHLIQQIRE-HTKAVTGLAILQSGEMLYSGSL-DKTARV 881 (1094)
Q Consensus 818 ~l~fsp-d--~LaSgs~Dg-----------~I~vWd~~t~~~~~~~~l~~-H~~~V~sv~fspdg~~LaSgs~-DgtI~v 881 (1094)
++++.+ + +++.|+.++ .+.+||..++.+..+..+.. +.....++++..+|++++.|+. ++.+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 445554 3 667776543 68899999987766655532 3334456788889999999984 568999
Q ss_pred EECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEE-eC-----CeEEEEcCCCCceEEE-------------
Q 001349 882 WSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHL-RN-----GKTKLLNSSKYPKCLA------------- 942 (1094)
Q Consensus 882 Wdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~-~~-----g~i~l~~~~~~v~~l~------------- 942 (1094)
||..+++............-. ..++.++|+.++++. .+ ..+.+|+.........
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~-------s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~ 342 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQ-------SSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK 342 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSC-------EEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT
T ss_pred ecCcCCceeECCCCCcccccc-------ceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccc
Confidence 999987644332211111111 223556888888777 33 4567777654332221
Q ss_pred ----EeCCE-EEEEEcC---------CeEEEEECCCCceeEEeccceee----cCCCCCeEEEEEe-CCccEEEEEECCC
Q 001349 943 ----LVQGK-VYCGCQD---------GAIQEIDLATGTFATIQTGHRKL----LGKANPVHALQVH-NGLVYTASTSLDG 1003 (1094)
Q Consensus 943 ----~s~~~-l~sgs~D---------g~I~iwDl~~~~~~~~~~~~~~~----~~h~~~V~sl~fs-~~~~~las~s~Dg 1003 (1094)
..+++ ++.|+.+ ..+..||..++........ ... ......-.++.|. .++.+++.|+.++
T Consensus 343 ~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~-~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~ 421 (656)
T 1k3i_A 343 QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGK-RQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPD 421 (656)
T ss_dssp TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEE-CEETTEECCCCBTCEEEEEETTTTEEEEECCBSS
T ss_pred cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCc-cccccccCCCCCCCceEeccCCCCeEEEEeCCCC
Confidence 01122 3445444 4567889887765432211 111 0011122445554 3556666665321
Q ss_pred -------C---EEEEEECCCCeEEEEe----cCCCCEEEEEEeCC--EEEEEEcC-----------CeEEEEECCCCcEE
Q 001349 1004 -------A---AVKMWSTSNYNMVGSL----PTLSEVRAMVVSSE--LVYLGCKG-----------GTVEIWDQKRQIRI 1056 (1094)
Q Consensus 1004 -------~---~I~iwd~~~~~~~~~~----~~~~~v~~l~~spd--~l~sgs~d-----------g~I~vwd~~t~~~~ 1056 (1094)
. .|.+||..+..-.... .....-.++++.++ .++.|+.+ ..+.+||..+.+-.
T Consensus 422 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~ 501 (656)
T 1k3i_A 422 YQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY 501 (656)
T ss_dssp SSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE
T ss_pred CCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCcee
Confidence 1 6788888766543322 22222233344444 66677643 56899998776422
Q ss_pred EEecc--cCCcceEEEEEcCCCCEEEEEeC
Q 001349 1057 ETLQT--GTSGKVQCMALDDNEEFLVIGTS 1084 (1094)
Q Consensus 1057 ~~l~~--~h~~~I~~l~~Spdg~~L~sgs~ 1084 (1094)
.+.. ..........+.|||++++.||.
T Consensus 502 -~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 502 -KQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp -ECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred -ecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 2211 11112234556799999999985
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00039 Score=82.48 Aligned_cols=297 Identities=13% Similarity=0.181 Sum_probs=184.4
Q ss_pred HHHHHHHHHhhhccccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhcc-CCchHHHHHHHHHHHhhccc
Q 001349 266 ITELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFN-SVDPRVLEATIFLLSELGSR 344 (1094)
Q Consensus 266 ~~~l~~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~-s~~~~v~~~av~~L~~l~s~ 344 (1094)
.+-++....++.++.-+++++.|+..++.++|+-...-. ..-+..++.+|-. ..|.++.+++...|+++...
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg-------~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~ 92 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVG-------IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISN 92 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHH-------HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhh-------hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 455566667777778888899999999998765432111 1123446666666 45778899999999887665
Q ss_pred ccchhhhhccCCCcHHHHHHHHhcChHHHHHHHHhcCCChHHHHHhhhhHHHHHHHHhccccccccccCchhhHHHHHHH
Q 001349 345 DKSVIHTLTRVESDVERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQ 424 (1094)
Q Consensus 345 ~~~~~~~i~~~~~~~~~L~~lLk~g~~~Aa~~l~~L~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~ 424 (1094)
+..--..-. ... ...+-. +...+.=+..-+.++.|+.+|++.+ + ..+-.++.+|..
T Consensus 93 ~~~~~~~~~-~~~-----------~~~~~~-----~~~~d~f~~~~~~i~~Ll~lL~~~d--f-----~vR~~alqlL~~ 148 (651)
T 3grl_A 93 DEEEEVEEN-STR-----------QSEDLG-----SQFTEIFIKQQENVTLLLSLLEEFD--F-----HVRWPGVKLLTS 148 (651)
T ss_dssp C--------------------------CHH-----HHHHHHHHHSTHHHHHHHHHTTCCC--H-----HHHHHHHHHHHH
T ss_pred CCccccccc-ccc-----------cchHHH-----HHHHHHHHcCCccHHHHHHHhcCcc--H-----HHHHHHHHHHHH
Confidence 431100000 000 000000 0000111122344578888886532 2 124456667776
Q ss_pred HhcCCcccccccchhhhc-cchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCC--
Q 001349 425 MIGDSEESIVSSIANTIV-SSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASD-- 501 (1094)
Q Consensus 425 l~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~-- 501 (1094)
|+..- -......|. .++||+.|++.|......-|..+..+|......+....+.++-+++.++++.+++....
T Consensus 149 L~~~r----~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~ 224 (651)
T 3grl_A 149 LLKQL----GPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSD 224 (651)
T ss_dssp HHHHS----HHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGG
T ss_pred HHhcC----cHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCc
Confidence 63221 123566666 67999999999998877778888888888999999999999999999999999888543
Q ss_pred c--hhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCC-----ccchhHHH---HHHhhhcccCCC
Q 001349 502 G--ERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANH-----DQCPVVAG---LLLQLDLLAEPR 571 (1094)
Q Consensus 502 ~--~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~-----~~~~~~a~---~l~~l~~~~~~~ 571 (1094)
. .=..|+.+|..|++.|- ...+-+.+.|++.. |..+|+..++ +| -+++ +|-=..+|+.|.
T Consensus 225 Ggivv~DCL~ll~nLLr~N~-----sNQ~~FrEt~~i~~---L~~LL~~~~~~~~W~~Q--k~~N~~~~L~iIrlLv~~~ 294 (651)
T 3grl_A 225 GGIVVEDCLILLQNLLKNNN-----SNQNFFKEGSYIQR---MKPWFEVGDENSGWSAQ--KVTNLHLMLQLVRVLVSPN 294 (651)
T ss_dssp SHHHHHHHHHHHHHHHTTCH-----HHHHHHHHTTCGGG---GGGGGCCCSCSSCCCHH--HHHHHHHHHHHHHHHTCTT
T ss_pred cchhHHHHHHHHHHHHhcCH-----HHHHHHHHcCCHHH---HHHHhCCCccccccHHH--HHHHHHHHHHHHHHHhCCC
Confidence 2 22357899999998843 33445677788877 3344432211 11 3566 444456677774
Q ss_pred CC---------CccHHHHHHHHHHHhhcCCCh-HHHHHHHHHHHhc
Q 001349 572 KM---------SIYREEAIDTLISCLRNSDYP-AAQLAAAKTIVSL 607 (1094)
Q Consensus 572 ~~---------~~~reea~~~~~~~l~~~~~~-~~~~~~~~~~~~l 607 (1094)
.. .+++-+.++.|+..+.....+ .++..|..|+..+
T Consensus 295 ~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~ 340 (651)
T 3grl_A 295 NPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEV 340 (651)
T ss_dssp SCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 32 456677788888877766544 4666666666653
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0046 Score=68.66 Aligned_cols=227 Identities=11% Similarity=0.044 Sum_probs=133.1
Q ss_pred ccccCcEEEEeeCCCCeEEEeCCcc-eeeccc--------------------CCCcEEEEEEeC-C-EEEEEECCCeEEE
Q 001349 781 LAFEMVKVLSNGHDSSADFWNHREL-VHVDSS--------------------ENGKVLSIACFR-D-KIFSGHSDGTIKV 837 (1094)
Q Consensus 781 ~~~d~~~l~s~s~dg~I~vWd~~~~-~~~~~~--------------------h~~~V~~l~fsp-d-~LaSgs~Dg~I~v 837 (1094)
+..++..++++..++.|..|+.... ...+.. ..+.+..+++.+ + .|+.+...+.|..
T Consensus 26 ~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~ 105 (322)
T 2fp8_A 26 FDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSV 105 (322)
T ss_dssp CCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEEE
T ss_pred EcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCEEE
Confidence 4456666777888899999987632 222110 113578999996 4 7777776677888
Q ss_pred EecCCCcceeEEEe-cc-cCCCeEEEEEec-CCCEEEEEeC-----------------CCcEEEEECCCCceEEEEeccc
Q 001349 838 WTGRGSILHLIQQI-RE-HTKAVTGLAILQ-SGEMLYSGSL-----------------DKTARVWSIGNEEIHCVQVHDI 897 (1094)
Q Consensus 838 Wd~~t~~~~~~~~l-~~-H~~~V~sv~fsp-dg~~LaSgs~-----------------DgtI~vWdi~~~~~~~~~~~~~ 897 (1094)
+|..++..+.+... .+ .......+++.+ +|++.++-.. ++.|..||..+++.......
T Consensus 106 ~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-- 183 (322)
T 2fp8_A 106 VGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-- 183 (322)
T ss_dssp ECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE--
T ss_pred EeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccC--
Confidence 99876632222211 11 123578899999 8987776533 36677888776643222110
Q ss_pred CccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEE-EcCCeEEEEECCCCce--eEEeccc
Q 001349 898 KDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCG-CQDGAIQEIDLATGTF--ATIQTGH 974 (1094)
Q Consensus 898 ~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sg-s~Dg~I~iwDl~~~~~--~~~~~~~ 974 (1094)
...+..++++|+|+. ++++ +.++.|..|++..... ...+.
T Consensus 184 -------~~~p~gia~~~dg~~----------------------------lyv~d~~~~~I~~~~~~~~~~~~~~~~~-- 226 (322)
T 2fp8_A 184 -------LHVPGGAEVSADSSF----------------------------VLVAEFLSHQIVKYWLEGPKKGTAEVLV-- 226 (322)
T ss_dssp -------ESCCCEEEECTTSSE----------------------------EEEEEGGGTEEEEEESSSTTTTCEEEEE--
T ss_pred -------CccCcceEECCCCCE----------------------------EEEEeCCCCeEEEEECCCCcCCccceEE--
Confidence 112334457777764 3333 3457788888764211 11111
Q ss_pred eeecCCCCCeEEEEEeCCccEEEEEECC---------CCEEEEEECCCCeEEEEecCC-----CCEEEEEEeCCEEEEEE
Q 001349 975 RKLLGKANPVHALQVHNGLVYTASTSLD---------GAAVKMWSTSNYNMVGSLPTL-----SEVRAMVVSSELVYLGC 1040 (1094)
Q Consensus 975 ~~~~~h~~~V~sl~fs~~~~~las~s~D---------g~~I~iwd~~~~~~~~~~~~~-----~~v~~l~~spd~l~sgs 1040 (1094)
.. .. ...+++++++.+.++.... ++.|..+|. .++.+..+... ..++++++..+.|+.++
T Consensus 227 -~~---~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~ 300 (322)
T 2fp8_A 227 -KI---PN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGT 300 (322)
T ss_dssp -EC---SS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEEETTEEEEEC
T ss_pred -eC---CC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEEeCCEEEEee
Confidence 11 12 6778898887766665430 136888886 47777666522 34667777666666654
Q ss_pred -cCCeEEEEECCC
Q 001349 1041 -KGGTVEIWDQKR 1052 (1094)
Q Consensus 1041 -~dg~I~vwd~~t 1052 (1094)
.++.|.++++..
T Consensus 301 ~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 301 LFHGSVGILVYDK 313 (322)
T ss_dssp SSCSEEEEEEC--
T ss_pred cCCCceEEEeccc
Confidence 567888888753
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.74 E-value=0.065 Score=59.28 Aligned_cols=222 Identities=9% Similarity=-0.041 Sum_probs=124.0
Q ss_pred CCCeEEEeCCcc-eeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCC---cceeEEEecccCCCeEEEEEecC
Q 001349 794 DSSADFWNHREL-VHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGS---ILHLIQQIREHTKAVTGLAILQS 866 (1094)
Q Consensus 794 dg~I~vWd~~~~-~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~---~~~~~~~l~~H~~~V~sv~fspd 866 (1094)
.+.|+..+.... ..........+.+++|+++ ++++-..++.|..++..+. . .....+...-.....+++.+.
T Consensus 9 ~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~-~~~~~~~~~~~~p~glavd~~ 87 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS-SYDTVISRDIQAPDGLAVDWI 87 (316)
T ss_dssp BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC---------CEEEECSSCSCCCEEEEETT
T ss_pred CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCc-ccEEEEeCCCCCcCEEEEeec
Confidence 356777887632 2222234567889999973 5555556789999998861 1 112223223345678999875
Q ss_pred CC-EEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC
Q 001349 867 GE-MLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ 945 (1094)
Q Consensus 867 g~-~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~ 945 (1094)
+. +.++-..++.|.+.+.+......+.... ......+ ++.|.+..+
T Consensus 88 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~-~~~P~~i-------avdp~~g~l------------------------- 134 (316)
T 1ijq_A 88 HSNIYWTDSVLGTVSVADTKGVKRKTLFREN-GSKPRAI-------VVDPVHGFM------------------------- 134 (316)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEEEECT-TCCEEEE-------EEETTTTEE-------------------------
T ss_pred CCeEEEEECCCCEEEEEeCCCCceEEEEECC-CCCcceE-------EeCCCCCEE-------------------------
Confidence 44 4455566788999998765332222111 1122223 255544433
Q ss_pred CEEEEEEc--CCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEe-c-
Q 001349 946 GKVYCGCQ--DGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL-P- 1021 (1094)
Q Consensus 946 ~~l~sgs~--Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~-~- 1021 (1094)
+.... .+.|..+++...... .+ ....-...+.+++++++..+..+....+.|..+|+.... ...+ .
T Consensus 135 ---y~~d~~~~~~I~~~~~dG~~~~-~~-----~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~ 204 (316)
T 1ijq_A 135 ---YWTDWGTPAKIKKGGLNGVDIY-SL-----VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILED 204 (316)
T ss_dssp ---EEEECSSSCEEEEEETTSCCEE-EE-----ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEEC
T ss_pred ---EEEccCCCCeEEEEcCCCCCeE-EE-----EECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeec
Confidence 22222 145666665432221 11 011224578999997655544444444599999986432 2222 2
Q ss_pred --CCCCEEEEEEeCCEEEEE-EcCCeEEEEECCCCcEEEEe
Q 001349 1022 --TLSEVRAMVVSSELVYLG-CKGGTVEIWDQKRQIRIETL 1059 (1094)
Q Consensus 1022 --~~~~v~~l~~spd~l~sg-s~dg~I~vwd~~t~~~~~~l 1059 (1094)
......++++..+.++.. ...+.|..+|..+++.+..+
T Consensus 205 ~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 205 EKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp TTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred CCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 234577888887855554 45689999998777655555
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0011 Score=70.62 Aligned_cols=150 Identities=9% Similarity=0.039 Sum_probs=106.1
Q ss_pred CCCceEEEEeCCEEEE-EEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCC
Q 001349 935 SKYPKCLALVQGKVYC-GCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN 1013 (1094)
Q Consensus 935 ~~~v~~l~~s~~~l~s-gs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~ 1013 (1094)
..+...+.|+++.|+. .+.+|.|+.+|+.+++..... .....---.+++..+..|.++. . ++.+.+||..+
T Consensus 54 ~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~------l~~~~FgeGit~~g~~Ly~ltw-~-~~~v~V~D~~T 125 (268)
T 3nok_A 54 NAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME------RLGNIFAEGLASDGERLYQLTW-T-EGLLFTWSGMP 125 (268)
T ss_dssp TCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE------ECTTCCEEEEEECSSCEEEEES-S-SCEEEEEETTT
T ss_pred ccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE------CCCCcceeEEEEeCCEEEEEEc-c-CCEEEEEECCc
Confidence 4556788888887655 455678999999999987432 1111122346777666665533 3 45999999999
Q ss_pred CeEEEEecCCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCC----cceEEEEEcCCCCEEEEEeCCCcEE
Q 001349 1014 YNMVGSLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTS----GKVQCMALDDNEEFLVIGTSDGRIQ 1089 (1094)
Q Consensus 1014 ~~~~~~~~~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~----~~I~~l~~Spdg~~L~sgs~DG~I~ 1089 (1094)
.+.+.++.....-+.+++....++.+..++.|+++|..+.+.+.++..+-. ..++.+.|. +|+..+..-.++.|.
T Consensus 126 l~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~ 204 (268)
T 3nok_A 126 PQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVL 204 (268)
T ss_dssp TEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEE
T ss_pred CcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEE
Confidence 999999985555567778888888777899999999999999888854321 145778887 776554444566777
Q ss_pred EEeC
Q 001349 1090 AWGL 1093 (1094)
Q Consensus 1090 iWdl 1093 (1094)
+.|.
T Consensus 205 vIDp 208 (268)
T 3nok_A 205 EIDP 208 (268)
T ss_dssp EECT
T ss_pred EEeC
Confidence 7664
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0028 Score=66.98 Aligned_cols=153 Identities=10% Similarity=0.123 Sum_probs=106.3
Q ss_pred cCCCCceEEEEeCCEEEEEEcC---CeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEE
Q 001349 933 NSSKYPKCLALVQGKVYCGCQD---GAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMW 1009 (1094)
Q Consensus 933 ~~~~~v~~l~~s~~~l~sgs~D---g~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iw 1009 (1094)
+.......+.|+++.++.++.. ..|+.+|+.+++........ .+ .---.+++..+..|.++ -.+ +.+.+|
T Consensus 18 d~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~----~~-~fgeGi~~~~~~ly~lt-w~~-~~v~v~ 90 (243)
T 3mbr_X 18 DTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVP----PP-YFGAGIVAWRDRLIQLT-WRN-HEGFVY 90 (243)
T ss_dssp CTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECC----TT-CCEEEEEEETTEEEEEE-SSS-SEEEEE
T ss_pred CCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCC----CC-cceeEEEEeCCEEEEEE-eeC-CEEEEE
Confidence 3456677888988887777665 48999999999987543211 11 11234566666655553 334 599999
Q ss_pred ECCCCeEEEEecCCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCC----cceEEEEEcCCCCEEEEEeCC
Q 001349 1010 STSNYNMVGSLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTS----GKVQCMALDDNEEFLVIGTSD 1085 (1094)
Q Consensus 1010 d~~~~~~~~~~~~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~----~~I~~l~~Spdg~~L~sgs~D 1085 (1094)
|..+.+.+.++.....-..++...+.++.+..++.|.++|..+.+.+.++..+.. ..++.+.|. +|+..+..-.+
T Consensus 91 D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s 169 (243)
T 3mbr_X 91 DLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLT 169 (243)
T ss_dssp ETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTT
T ss_pred ECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCC
Confidence 9999999999996555567777777777777789999999999999888864321 245677775 66655444346
Q ss_pred CcEEEEeC
Q 001349 1086 GRIQAWGL 1093 (1094)
Q Consensus 1086 G~I~iWdl 1093 (1094)
..|.+.|.
T Consensus 170 ~~I~vIDp 177 (243)
T 3mbr_X 170 SRIARIDP 177 (243)
T ss_dssp TEEEEECT
T ss_pred CeEEEEEC
Confidence 66766654
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.66 E-value=0.088 Score=60.37 Aligned_cols=228 Identities=9% Similarity=-0.044 Sum_probs=129.1
Q ss_pred CCCCeEEEeCCcc-eeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCc--ceeEEEecccCCCeEEEEEec-
Q 001349 793 HDSSADFWNHREL-VHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSI--LHLIQQIREHTKAVTGLAILQ- 865 (1094)
Q Consensus 793 ~dg~I~vWd~~~~-~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~--~~~~~~l~~H~~~V~sv~fsp- 865 (1094)
....|+..++... ...+......+..++|++. ++++-...+.|+.+++.+.. ......+.........+++.+
T Consensus 90 ~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~ 169 (400)
T 3p5b_L 90 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 169 (400)
T ss_dssp ETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETT
T ss_pred ccceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEec
Confidence 3467777777622 2233344567899999973 45555567899999987621 012233333445678899988
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC
Q 001349 866 SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ 945 (1094)
Q Consensus 866 dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~ 945 (1094)
.+++.++-...+.|.+.++++.....+.... -.....++ +.|.+..+.+..+.
T Consensus 170 ~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~-~~~P~~ia-------vdp~~g~ly~td~~------------------- 222 (400)
T 3p5b_L 170 HSNIYWTDSVLGTVSVADTKGVKRKTLFREN-GSKPRAIV-------VDPVHGFMYWTDWG------------------- 222 (400)
T ss_dssp TTEEEEEETTTTEEEEECTTTCSEEEEEECS-SCCEEEEE-------EETTTTEEEEEECS-------------------
T ss_pred CCceEEEECCCCeEEEEeCCCCceEEEEeCC-CCCcceEE-------EecccCeEEEEeCC-------------------
Confidence 4555555566788988888765433222111 11122332 55544433222211
Q ss_pred CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec---C
Q 001349 946 GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---T 1022 (1094)
Q Consensus 946 ~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~---~ 1022 (1094)
..+.|...++........ ....-...+.|++++++..+..+......|..+|+.......... .
T Consensus 223 -------~~~~I~~~~~dG~~~~~~------~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~ 289 (400)
T 3p5b_L 223 -------TPAKIKKGGLNGVDIYSL------VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR 289 (400)
T ss_dssp -------SSCCEEEEETTSCSCEEE------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSST
T ss_pred -------CCCEEEEEeCCCCccEEE------EECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCC
Confidence 124566666653332211 111224678899997655555554444589999986543322222 2
Q ss_pred CCCEEEEEEeCCEEE-EEEcCCeEEEEECCCCcEEEEec
Q 001349 1023 LSEVRAMVVSSELVY-LGCKGGTVEIWDQKRQIRIETLQ 1060 (1094)
Q Consensus 1023 ~~~v~~l~~spd~l~-sgs~dg~I~vwd~~t~~~~~~l~ 1060 (1094)
-....++++..+.++ +-...+.|..+|..+|+.+..+.
T Consensus 290 l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 290 LAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp TSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred CCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 345678888888544 45566889999988887666653
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0044 Score=77.64 Aligned_cols=195 Identities=11% Similarity=0.044 Sum_probs=110.9
Q ss_pred cEEEEEEe-CC--EEE-EEECCC----eEEEEecCCC-cceeEEEecccCCCeEEEEEecCCCEEEEEeCC-----CcEE
Q 001349 815 KVLSIACF-RD--KIF-SGHSDG----TIKVWTGRGS-ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD-----KTAR 880 (1094)
Q Consensus 815 ~V~~l~fs-pd--~La-Sgs~Dg----~I~vWd~~t~-~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D-----gtI~ 880 (1094)
.+...+|| || +|+ +.+.+| +|+++|+.++ .. ....+.. ....+.|+|||+.|+..+.| ..|.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-IADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC-CCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe-CCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence 68889999 87 444 334333 5999999987 52 1111211 13468899999888877765 2578
Q ss_pred EEECCCCce--EEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEE
Q 001349 881 VWSIGNEEI--HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQ 958 (1094)
Q Consensus 881 vWdi~~~~~--~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~ 958 (1094)
+|++.++.. ..+...........+ .|+|||+.|++...++ ....|.
T Consensus 251 ~~~lgt~~~~~~lv~~~~~~~~~~~~-------~~SpDg~~l~~~~~~~-------------------------~~~~l~ 298 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEHNPLFSAFM-------YKAADTNTLCIGSQSP-------------------------ETAEVH 298 (751)
T ss_dssp EEETTSCGGGCEEEEECCCTTCEEEE-------EECTTSSEEEEEEECS-------------------------SCEEEE
T ss_pred EEECCCCchhcEEEEecCCCceEEEE-------EECCCCCEEEEEecCC-------------------------CCceEE
Confidence 888877642 122111111222233 3899999876544321 234577
Q ss_pred EEECCCCc--e-eEEeccceeecCCCCCeEEEEEeCCccEEEEEECC---CCEEEEEECCCC-eEEE-EecCCC--CEEE
Q 001349 959 EIDLATGT--F-ATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLD---GAAVKMWSTSNY-NMVG-SLPTLS--EVRA 1028 (1094)
Q Consensus 959 iwDl~~~~--~-~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~D---g~~I~iwd~~~~-~~~~-~~~~~~--~v~~ 1028 (1094)
++|+.++. . .. ...........++.|+.++.+++....+ ...|..+|+.++ .... .+.+.. .+..
T Consensus 299 ~~d~~~~~~~~~~~-----~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~ 373 (751)
T 2xe4_A 299 LLDLRKGNAHNTLE-----IVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMES 373 (751)
T ss_dssp EEESSSCTTCCCEE-----ESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEE
T ss_pred EEECCCCCCCceeE-----EeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEE
Confidence 88887652 2 01 1112234556667766666555555443 136777787652 2222 233333 4567
Q ss_pred EEEeCC-EEEEEEcCCe--EEEEEC
Q 001349 1029 MVVSSE-LVYLGCKGGT--VEIWDQ 1050 (1094)
Q Consensus 1029 l~~spd-~l~sgs~dg~--I~vwd~ 1050 (1094)
+.+..+ ++++...+|. |+++|+
T Consensus 374 ~~~~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 374 IAVRSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEECSSEEEEEEEETTEEEEEEEEC
T ss_pred EEEECCEEEEEEEeCCEEEEEEEec
Confidence 777777 4556667775 555665
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.015 Score=64.04 Aligned_cols=225 Identities=9% Similarity=0.063 Sum_probs=121.8
Q ss_pred cccccCcEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCC--EEEEEEC-CC-eEEEEecCCCcceeEEEecccC
Q 001349 780 PLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHS-DG-TIKVWTGRGSILHLIQQIREHT 855 (1094)
Q Consensus 780 ~~~~d~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd--~LaSgs~-Dg-~I~vWd~~t~~~~~~~~l~~H~ 855 (1094)
.+.+++..+++...++.|..||............+.+..+++.++ ++++... ++ .|..+|..++....+..+. ..
T Consensus 38 a~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~-~~ 116 (306)
T 2p4o_A 38 ASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLP-DA 116 (306)
T ss_dssp EECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECT-TC
T ss_pred EECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCC-Cc
Confidence 445567766666678889889876433322233457899999986 4443333 22 4667787777443333332 22
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEeccc-C--ccceeeeecCceEEEeeCCCeEEEEEeCCeEEEE
Q 001349 856 KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDI-K--DQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLL 932 (1094)
Q Consensus 856 ~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~-~--~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~ 932 (1094)
.....+++.+++..+++-..++.|.++|..++.......... . .....+. .++. ++++++.+
T Consensus 117 ~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~-~png--is~dg~~l------------ 181 (306)
T 2p4o_A 117 IFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFP-AANG--LKRFGNFL------------ 181 (306)
T ss_dssp SCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSC-SEEE--EEEETTEE------------
T ss_pred cccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCC-cCCC--cCcCCCEE------------
Confidence 334556655555555555568888888887653222111100 0 0000110 0111 14444332
Q ss_pred cCCCCceEEEEeCCEEEEEEcCCeEEEEECCC-CceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEEC
Q 001349 933 NSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT-GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWST 1011 (1094)
Q Consensus 933 ~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~-~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~ 1011 (1094)
+++-...+.|..||+.. +.... ...+. .......+++++++.+.++.... +.|.++|.
T Consensus 182 ---------------yv~d~~~~~I~~~~~~~~g~~~~----~~~~~-~~~~P~gi~vd~dG~l~va~~~~-~~V~~~~~ 240 (306)
T 2p4o_A 182 ---------------YVSNTEKMLLLRIPVDSTDKPGE----PEIFV-EQTNIDDFAFDVEGNLYGATHIY-NSVVRIAP 240 (306)
T ss_dssp ---------------EEEETTTTEEEEEEBCTTSCBCC----CEEEE-ESCCCSSEEEBTTCCEEEECBTT-CCEEEECT
T ss_pred ---------------EEEeCCCCEEEEEEeCCCCCCCc----cEEEe-ccCCCCCeEECCCCCEEEEeCCC-CeEEEECC
Confidence 23334567888888864 32210 01111 01245678899888776665544 48999997
Q ss_pred CCCeEEE--EecC-CCCEEEEEEe---CC--EEEEEEcC
Q 001349 1012 SNYNMVG--SLPT-LSEVRAMVVS---SE--LVYLGCKG 1042 (1094)
Q Consensus 1012 ~~~~~~~--~~~~-~~~v~~l~~s---pd--~l~sgs~d 1042 (1094)
. ++... .+.. ...+++++|. ++ .+++++..
T Consensus 241 ~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 241 D-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp T-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred C-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 5 55532 3333 3678999998 55 56655543
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.024 Score=65.78 Aligned_cols=235 Identities=10% Similarity=0.095 Sum_probs=129.6
Q ss_pred CcEEEEEEeC-C--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCC-C----cEEEEECC
Q 001349 814 GKVLSIACFR-D--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD-K----TARVWSIG 885 (1094)
Q Consensus 814 ~~V~~l~fsp-d--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D-g----tI~vWdi~ 885 (1094)
.....++|+| + .|+.+...+.|+.+|..++. +..+.........++|+++|++|+.+... + .+.+.+.
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~---v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~- 212 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY---VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR- 212 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE---EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE---EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-
Confidence 3567889996 2 67666666899999998872 33333355668899999999966666542 2 2222332
Q ss_pred CCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEE-EcCCeEEEEECCC
Q 001349 886 NEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCG-CQDGAIQEIDLAT 964 (1094)
Q Consensus 886 ~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sg-s~Dg~I~iwDl~~ 964 (1094)
.+......... . ...+..+++.|++ +.++++ ..++.|..||..+
T Consensus 213 ~g~~~~~~~l~------~-~~~p~giavdp~~----------------------------g~lyv~d~~~~~V~~~~~~~ 257 (430)
T 3tc9_A 213 ESGFKVITELT------K-GQNCNGAETHPIN----------------------------GELYFNSWNAGQVFRYDFTT 257 (430)
T ss_dssp GGTSCSEEEEE------E-CSSCCCEEECTTT----------------------------CCEEEEETTTTEEEEEETTT
T ss_pred CCceeeeeeec------c-CCCceEEEEeCCC----------------------------CEEEEEECCCCEEEEEECCC
Confidence 22211000000 0 0112223345521 223333 3567888888876
Q ss_pred CceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCC--CeE--EEEecC----------------CC
Q 001349 965 GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN--YNM--VGSLPT----------------LS 1024 (1094)
Q Consensus 965 ~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~--~~~--~~~~~~----------------~~ 1024 (1094)
+...... . .+.......++|++++.++.......+.|..++... +.. ...+.. -.
T Consensus 258 ~~~~~~~----~-~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~ 332 (430)
T 3tc9_A 258 QETTPLF----T-IQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMH 332 (430)
T ss_dssp TEEEEEE----E-CSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBS
T ss_pred CcEEEEE----E-cCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeC
Confidence 6542211 1 111234678999999985555555556899987653 221 111111 01
Q ss_pred CEE-EEEEe--------CC-EEEEEE-cCCeEEEEECCCCcEEEEecc------c--C--------CcceEEEEEcCC-C
Q 001349 1025 EVR-AMVVS--------SE-LVYLGC-KGGTVEIWDQKRQIRIETLQT------G--T--------SGKVQCMALDDN-E 1076 (1094)
Q Consensus 1025 ~v~-~l~~s--------pd-~l~sgs-~dg~I~vwd~~t~~~~~~l~~------~--h--------~~~I~~l~~Spd-g 1076 (1094)
... .+++. ++ .|+.+. ..+.|+.++ .+|......-. + . -.....++++|+ +
T Consensus 333 ~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g 411 (430)
T 3tc9_A 333 APRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERE 411 (430)
T ss_dssp SEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTT
T ss_pred CCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCC
Confidence 233 56664 23 455554 567899998 45643333211 0 0 115789999995 6
Q ss_pred CEEEEEeCCCcEEEEeC
Q 001349 1077 EFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1077 ~~L~sgs~DG~I~iWdl 1093 (1094)
.++++-..++.|+.+++
T Consensus 412 ~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 412 CFFIGDRENRRIRKIGY 428 (430)
T ss_dssp EEEEEEGGGTEEEEEEE
T ss_pred EEEEEECCCCeEEEEcc
Confidence 55566556778888765
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.058 Score=60.65 Aligned_cols=230 Identities=9% Similarity=-0.010 Sum_probs=125.7
Q ss_pred EEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEE-EEeCCCcEEEEECCCCceEEEE
Q 001349 816 VLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLY-SGSLDKTARVWSIGNEEIHCVQ 893 (1094)
Q Consensus 816 V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~La-Sgs~DgtI~vWdi~~~~~~~~~ 893 (1094)
.+|.+..++ +|+.+ ....|+..++.+.. ....+. ....+..++|++.+..|+ +-...+.|..++.+++....+.
T Consensus 36 ~~C~~~~~~~~ll~~-~~~~I~~i~~~g~~--~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 111 (349)
T 3v64_C 36 RSCKALGPEPVLLFA-NRIDIRQVLPHRSE--YTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 111 (349)
T ss_dssp SCEEESSSCCEEEEE-CBSCEEEECTTSCC--EEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred CcccccccCceeEee-cccceEEEeCCCCe--eEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence 344444444 33333 33558888887762 333333 344588999997555544 5456788999998876432222
Q ss_pred ecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEecc
Q 001349 894 VHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTG 973 (1094)
Q Consensus 894 ~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~ 973 (1094)
.... ..... +++.+.+..+ +++-...+.|.++++........
T Consensus 112 ~~~~-~~p~g-------lavd~~~g~l---------------------------y~~d~~~~~I~~~~~dG~~~~~l--- 153 (349)
T 3v64_C 112 STGL-ESPGG-------LAVDWVHDKL---------------------------YWTDSGTSRIEVANLDGAHRKVL--- 153 (349)
T ss_dssp CSSC-SCCCE-------EEEETTTTEE---------------------------EEEETTTTEEEEEETTSCSCEEE---
T ss_pred eCCC-CCccE-------EEEecCCCeE---------------------------EEEcCCCCeEEEEcCCCCceEEE---
Confidence 1111 11112 2244333321 22233456777777764432211
Q ss_pred ceeecCCCCCeEEEEEeCCccEEEEEECCC-CEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEE-EcCCeEEEE
Q 001349 974 HRKLLGKANPVHALQVHNGLVYTASTSLDG-AAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLG-CKGGTVEIW 1048 (1094)
Q Consensus 974 ~~~~~~h~~~V~sl~fs~~~~~las~s~Dg-~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sg-s~dg~I~vw 1048 (1094)
....-.....++++|.+..+....... ..|..+++.......... .-.....++++++ .|+.+ +..+.|..+
T Consensus 154 ---~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~ 230 (349)
T 3v64_C 154 ---LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA 230 (349)
T ss_dssp ---ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ---EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEE
Confidence 112234568899997544333333332 488888876433222222 3456889999975 55555 456889999
Q ss_pred ECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1049 DQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1049 d~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
|+........+ ........++++ ..+...++-...+.|..++
T Consensus 231 ~~dG~~~~~~~-~~~~~~P~giav-~~~~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 231 NLDGSHRKAVI-SQGLPHPFAITV-FEDSLYWTDWHTKSINSAN 272 (349)
T ss_dssp ETTSCSCEEEE-CSSCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred eCCCCceEEEE-eCCCCCceEEEE-ECCEEEEecCCCCeEEEEE
Confidence 98754433333 233445678888 3455555555567776665
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.042 Score=62.77 Aligned_cols=228 Identities=9% Similarity=-0.009 Sum_probs=126.5
Q ss_pred EEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCceEEEEec
Q 001349 818 SIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE-MLYSGSLDKTARVWSIGNEEIHCVQVH 895 (1094)
Q Consensus 818 ~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~-~LaSgs~DgtI~vWdi~~~~~~~~~~~ 895 (1094)
|.+..++ +|+.+ ....|+.+++.++. ....+ .....+..++|++.+. ++++-...+.|..|+.+++....+...
T Consensus 81 C~~~~~~~~l~~~-~~~~I~~i~~~~~~--~~~~~-~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 156 (386)
T 3v65_B 81 CKALGPEPVLLFA-NRIDIRQVLPHRSE--YTLLL-NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 156 (386)
T ss_dssp EEECSSCCEEEEE-CBSCEEEECTTSCC--CEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred ECCccccceeEee-cCccceeeccCCCc--EEEEe-cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence 4343344 34333 34678888988763 22223 2345688999997555 444555678899999887643322211
Q ss_pred ccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccce
Q 001349 896 DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHR 975 (1094)
Q Consensus 896 ~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~ 975 (1094)
.. .. +..+++.+.+..+ +++-...+.|.++++........
T Consensus 157 ~~-~~-------p~glavd~~~g~l---------------------------Y~~d~~~~~I~~~~~dg~~~~~l----- 196 (386)
T 3v65_B 157 GL-ES-------PGGLAVDWVHDKL---------------------------YWTDSGTSRIEVANLDGAHRKVL----- 196 (386)
T ss_dssp SC-SC-------CCCEEEETTTTEE---------------------------EEEETTTTEEEECBTTSCSCEEE-----
T ss_pred CC-CC-------ccEEEEEeCCCeE---------------------------EEEcCCCCeEEEEeCCCCceEEe-----
Confidence 11 11 1222244433322 22223345677777654332211
Q ss_pred eecCCCCCeEEEEEeCCccEEEEEECCC-CEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEE-EcCCeEEEEEC
Q 001349 976 KLLGKANPVHALQVHNGLVYTASTSLDG-AAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLG-CKGGTVEIWDQ 1050 (1094)
Q Consensus 976 ~~~~h~~~V~sl~fs~~~~~las~s~Dg-~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sg-s~dg~I~vwd~ 1050 (1094)
+.........++++|.+.++....... ..|..+++.......... .-.....++++++ .|+.+ +..+.|..+|+
T Consensus 197 -~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~ 275 (386)
T 3v65_B 197 -LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL 275 (386)
T ss_dssp -ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECT
T ss_pred -ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeC
Confidence 112224578899997544443333332 488888876443333222 3456889999965 55554 45688999998
Q ss_pred CCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1051 KRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1051 ~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
........+ ........++++ ..+.++++-...+.|..++
T Consensus 276 dG~~~~~~~-~~~~~~P~giav-~~~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 276 DGSHRKAVI-SQGLPHPFAITV-FEDSLYWTDWHTKSINSAN 315 (386)
T ss_dssp TSCSCEEEE-CSSCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred CCCeeEEEE-ECCCCCceEEEE-ECCEEEEeeCCCCeEEEEE
Confidence 754433333 233445678888 3455556666677777765
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.043 Score=63.73 Aligned_cols=235 Identities=11% Similarity=0.065 Sum_probs=129.9
Q ss_pred CcEEEEEEeC----CEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCC---Cc-EEEEECC
Q 001349 814 GKVLSIACFR----DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD---KT-ARVWSIG 885 (1094)
Q Consensus 814 ~~V~~l~fsp----d~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D---gt-I~vWdi~ 885 (1094)
.....++|++ ..|+.+...+.|+.+|..++ .+..+.........++|+++|+++++-... .. +...+..
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g---~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ---YVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTT---EEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCC---EEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECC
Confidence 3467899997 36666665589999999887 233444455668999999999944443321 11 2222221
Q ss_pred CCceEEEEecccCccceeeeecCceEEEee-CCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEE-cCCeEEEEECC
Q 001349 886 NEEIHCVQVHDIKDQIQNLAVSNSILCFIP-QGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGC-QDGAIQEIDLA 963 (1094)
Q Consensus 886 ~~~~~~~~~~~~~~~V~~v~~~~~~~~fsp-dg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs-~Dg~I~iwDl~ 963 (1094)
.+.... . .......+..+++.| +| .|+++. .++.|+.+|..
T Consensus 216 ~~~~~~-~-------~~~~~~~P~giavd~~~G-----------------------------~lyv~d~~~~~V~~~d~~ 258 (433)
T 4hw6_A 216 SGFTER-L-------SLCNARGAKTCAVHPQNG-----------------------------KIYYTRYHHAMISSYDPA 258 (433)
T ss_dssp GTTCCE-E-------EEEECSSBCCCEECTTTC-----------------------------CEEECBTTCSEEEEECTT
T ss_pred CCeecc-c-------cccccCCCCEEEEeCCCC-----------------------------eEEEEECCCCEEEEEECC
Confidence 110000 0 000001122233444 22 244333 45678888887
Q ss_pred CCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECC--CCeE--EEEecC----------------C
Q 001349 964 TGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS--NYNM--VGSLPT----------------L 1023 (1094)
Q Consensus 964 ~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~--~~~~--~~~~~~----------------~ 1023 (1094)
++....... . .+....-..++|++++.++..+....+.|..++.. ++.. ...+.. -
T Consensus 259 ~g~~~~~~~---~-~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~ 334 (433)
T 4hw6_A 259 TGTLTEEEV---M-MDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARL 334 (433)
T ss_dssp TCCEEEEEE---E-CSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBC
T ss_pred CCeEEEEEe---c-cCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEE
Confidence 776522111 0 11112334799999988555555555699998865 2321 111111 1
Q ss_pred CCEEEEEE---------eCC-EEEEEE-cCCeEEEEECCCCcEEEEecccC----------------CcceEEEEEc-CC
Q 001349 1024 SEVRAMVV---------SSE-LVYLGC-KGGTVEIWDQKRQIRIETLQTGT----------------SGKVQCMALD-DN 1075 (1094)
Q Consensus 1024 ~~v~~l~~---------spd-~l~sgs-~dg~I~vwd~~t~~~~~~l~~~h----------------~~~I~~l~~S-pd 1075 (1094)
.....+++ .++ .|+.+. ..+.|+.++. +|......-.+. -.....|+++ ++
T Consensus 335 ~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~ 413 (433)
T 4hw6_A 335 WGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKR 413 (433)
T ss_dssp SSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTT
T ss_pred cCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCC
Confidence 24677898 555 455554 5678999985 554333221111 1247899999 67
Q ss_pred CCEEEEEeCCCcEEEEeC
Q 001349 1076 EEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1076 g~~L~sgs~DG~I~iWdl 1093 (1094)
|.++++=..+++|+.+++
T Consensus 414 g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 414 KCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp TEEEEEEGGGTEEEEEEE
T ss_pred CEEEEEeCCCCEEEEEec
Confidence 766666666788888775
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.071 Score=59.25 Aligned_cols=231 Identities=10% Similarity=-0.017 Sum_probs=121.2
Q ss_pred CCcEEEEEEeCCEEEEEECCCeEEEEecCCC-cceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc-eE
Q 001349 813 NGKVLSIACFRDKIFSGHSDGTIKVWTGRGS-ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE-IH 890 (1094)
Q Consensus 813 ~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~-~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~-~~ 890 (1094)
...+.+|.|.++.++.++.+|.|..- .+.+ .++.+.....+.+.+..+.+.+++..++.+ .+|.|.. ..+.|+ ..
T Consensus 79 ~~~~~~i~~~~~~~~~~g~~g~i~~S-~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~ 155 (327)
T 2xbg_A 79 DYRFNSVSFQGNEGWIVGEPPIMLHT-TDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQ 155 (327)
T ss_dssp CCEEEEEEEETTEEEEEEETTEEEEE-SSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEE
T ss_pred CccEEEEEecCCeEEEEECCCeEEEE-CCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCE
Confidence 45789999998755556667766543 2223 223322222244567888888777666655 4564422 223332 22
Q ss_pred EEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEE
Q 001349 891 CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATI 970 (1094)
Q Consensus 891 ~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~ 970 (1094)
... ......+..+. +.+++. ++..+.+|.+..-+-..+..-..
T Consensus 156 ~~~-~~~~~~~~~~~-------~~~~~~-----------------------------~~~~g~~G~~~~S~d~gG~tW~~ 198 (327)
T 2xbg_A 156 ALV-QEAIGVMRNLN-------RSPSGE-----------------------------YVAVSSRGSFYSTWEPGQTAWEP 198 (327)
T ss_dssp EEE-CSCCCCEEEEE-------ECTTSC-----------------------------EEEEETTSSEEEEECTTCSSCEE
T ss_pred Eee-cCCCcceEEEE-------EcCCCc-----------------------------EEEEECCCcEEEEeCCCCCceeE
Confidence 221 12222333333 444444 33333444433322111221111
Q ss_pred eccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-----CCCCEEEEEEeCC-EEEEEEcCCe
Q 001349 971 QTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-----TLSEVRAMVVSSE-LVYLGCKGGT 1044 (1094)
Q Consensus 971 ~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-----~~~~v~~l~~spd-~l~sgs~dg~ 1044 (1094)
. -......+..+.+.+++.+.+.+ .+| .+.+++...++.-..+. ....+..+.+.++ .+++++.+|.
T Consensus 199 ~-----~~~~~~~~~~~~~~~~g~~~~~~-~~G-~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~ 271 (327)
T 2xbg_A 199 H-----NRTTSRRLHNMGFTPDGRLWMIV-NGG-KIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGA 271 (327)
T ss_dssp E-----ECCSSSCEEEEEECTTSCEEEEE-TTT-EEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTC
T ss_pred C-----CCCCCCccceeEECCCCCEEEEe-CCc-eEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCe
Confidence 0 11234578888888887765544 444 67666433233322222 2235888888865 5555566777
Q ss_pred EEEEECCCCcEEEEeccc--CCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1045 VEIWDQKRQIRIETLQTG--TSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1045 I~vwd~~t~~~~~~l~~~--h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
| .+..+.|+.-..+..+ +...+.++.|.+++ .+++++.+|+|.-++
T Consensus 272 i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 272 L-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp E-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred E-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence 7 4555556555544322 23567889897554 566777899887664
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.12 Score=55.05 Aligned_cols=213 Identities=10% Similarity=0.066 Sum_probs=122.4
Q ss_pred ecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEec-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 001349 808 VDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIR-EHTKAVTGLAILQSGEMLYSGSLDKTARVWS 883 (1094)
Q Consensus 808 ~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~-~H~~~V~sv~fspdg~~LaSgs~DgtI~vWd 883 (1094)
.+.+-.+.+..++|+|+ ++++...++.|...|.. + +.++.+. +-....-.|++.+++.++++.-.++.+.+++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g--~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-G--DLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVIS 97 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-C--CEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-C--CEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence 44566678999999984 55567789999999998 5 4555542 2225678899998888777766778899998
Q ss_pred CCCCce-EEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEEC
Q 001349 884 IGNEEI-HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDL 962 (1094)
Q Consensus 884 i~~~~~-~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl 962 (1094)
+..... .........-....-...-..++|.|+++ .++++.......+|.+
T Consensus 98 v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~----------------------------~L~va~E~~p~~i~~~ 149 (255)
T 3qqz_A 98 LTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDH----------------------------TFWFFKEKNPIEVYKV 149 (255)
T ss_dssp ECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTT----------------------------EEEEEEESSSEEEEEE
T ss_pred cCCCCeeeeeeeeccccccccccCCcceEEEeCCCC----------------------------EEEEEECcCCceEEEE
Confidence 876431 11111110000000000001222444443 3444444433333333
Q ss_pred C---CCceeEEeccce-eecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecC--C--------CCEEE
Q 001349 963 A---TGTFATIQTGHR-KLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT--L--------SEVRA 1028 (1094)
Q Consensus 963 ~---~~~~~~~~~~~~-~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~--~--------~~v~~ 1028 (1094)
. .+.......... .-..+...+.+++++|....+...+..++.+.++|.. |+.+..+.- + .....
T Consensus 150 ~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEG 228 (255)
T 3qqz_A 150 NGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEG 228 (255)
T ss_dssp ESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEE
T ss_pred cccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCe
Confidence 2 111111111000 0011234578999998765555566666799999975 556665551 1 36789
Q ss_pred EEEeCC-EEEEEEcCCeEEEEECCC
Q 001349 1029 MVVSSE-LVYLGCKGGTVEIWDQKR 1052 (1094)
Q Consensus 1029 l~~spd-~l~sgs~dg~I~vwd~~t 1052 (1094)
|+|+++ .+++.++.+.+++|....
T Consensus 229 ia~d~~G~lyIvsE~n~~y~f~~~~ 253 (255)
T 3qqz_A 229 VAMDASGNIYIVSEPNRFYRFTPQS 253 (255)
T ss_dssp EEECTTCCEEEEETTTEEEEEEC--
T ss_pred eEECCCCCEEEEcCCceEEEEEecC
Confidence 999998 677778888888886543
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.39 E-value=0.11 Score=57.39 Aligned_cols=223 Identities=9% Similarity=0.006 Sum_probs=126.1
Q ss_pred CCCeEEEeCCcc---eeecccCCCcEEEEEEeC--C-EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecC-
Q 001349 794 DSSADFWNHREL---VHVDSSENGKVLSIACFR--D-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS- 866 (1094)
Q Consensus 794 dg~I~vWd~~~~---~~~~~~h~~~V~~l~fsp--d-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspd- 866 (1094)
...|+.+++... .......-..+.+++|.+ + ++++-...+.|..++..++.. ....+...-.....+++.+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~-~~~~~~~~l~~p~glavd~~~ 90 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES-VQNVVVSGLLSPDGLACDWLG 90 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC-CCEEEEECCSCCCEEEEETTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc-eEEEEcCCCCCccEEEEEcCC
Confidence 456777777632 122222234567899987 3 555666778999999887621 11122222345678899874
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCC
Q 001349 867 GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQG 946 (1094)
Q Consensus 867 g~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~ 946 (1094)
+.+.++-...+.|.+++.+......+.... ......+ ++.|.+..
T Consensus 91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~-~~~P~gi-------avdp~~g~--------------------------- 135 (318)
T 3sov_A 91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQE-LDQPRAI-------ALDPSSGF--------------------------- 135 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSS-CSSEEEE-------EEEGGGTE---------------------------
T ss_pred CeEEEEECCCCEEEEEECCCCcEEEEEeCC-CCCccEE-------EEeCCCCE---------------------------
Confidence 555555566788999998765322222111 1112222 25554433
Q ss_pred EEEEEE--cCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CC
Q 001349 947 KVYCGC--QDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TL 1023 (1094)
Q Consensus 947 ~l~sgs--~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~ 1023 (1094)
++... ..+.|..+++......... ...-...+.+++++++..+..+....+.|..+|+.......... ..
T Consensus 136 -ly~td~~~~~~I~r~~~dG~~~~~~~------~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~ 208 (318)
T 3sov_A 136 -MYWTDWGEVPKIERAGMDGSSRFIII------NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSL 208 (318)
T ss_dssp -EEEEECSSSCEEEEEETTSCSCEEEE------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCC
T ss_pred -EEEEecCCCCEEEEEEcCCCCeEEEE------ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCC
Confidence 33332 1355666665432221111 11124568999997555444444444599999986433222222 34
Q ss_pred CCEEEEEEeCCEEE-EEEcCCeEEEEECCCCcEEEEe
Q 001349 1024 SEVRAMVVSSELVY-LGCKGGTVEIWDQKRQIRIETL 1059 (1094)
Q Consensus 1024 ~~v~~l~~spd~l~-sgs~dg~I~vwd~~t~~~~~~l 1059 (1094)
....++++..+.++ +-...+.|..+|..+|+....+
T Consensus 209 ~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 209 PHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp SCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCceEEEEeCCEEEEEecCCCeEEEEECCCCCceEEE
Confidence 56778888888544 4446789999999877655554
|
| >3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00014 Score=63.68 Aligned_cols=46 Identities=9% Similarity=0.112 Sum_probs=39.5
Q ss_pred eccCccccccCcE-EcCCcccccHHhHHHHHHhCCCCCCCCCcCCCC
Q 001349 165 VCPITTHIFDDPV-TLETGQTYERRAIQEWIERGNSSCPITRQKLSS 210 (1094)
Q Consensus 165 ~CpIc~~~~~dPv-~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~ 210 (1094)
.|++|.-.+..-. ++||+|.||..|+..|..++...||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 4899998888654 579999999999999998878899999987653
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.31 Score=53.73 Aligned_cols=212 Identities=12% Similarity=0.011 Sum_probs=116.6
Q ss_pred CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEE-EEEeCCCcEEEEECCCC----ceEEEEecccCccceeeeec
Q 001349 833 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEML-YSGSLDKTARVWSIGNE----EIHCVQVHDIKDQIQNLAVS 907 (1094)
Q Consensus 833 g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~L-aSgs~DgtI~vWdi~~~----~~~~~~~~~~~~~V~~v~~~ 907 (1094)
..|+..|+.+.. ....+. ....+..++|++++..| ++-..++.|..++..+. ....+. ...-.....
T Consensus 10 ~~I~~i~~~~~~--~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~-~~~~~~p~g---- 81 (316)
T 1ijq_A 10 HEVRKMTLDRSE--YTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQAPDG---- 81 (316)
T ss_dssp SSEEEEETTSCC--CEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-CSSCSCCCE----
T ss_pred CeEEEEECCCcc--eEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE-eCCCCCcCE----
Confidence 568889998873 333333 45567899999865544 45455688998888762 111110 000001111
Q ss_pred CceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEE-EcCCeEEEEECCCCceeEEeccceeecCCCCCeEE
Q 001349 908 NSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCG-CQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHA 986 (1094)
Q Consensus 908 ~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sg-s~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~s 986 (1094)
+++.+.+ +.++.. ..++.|.++|+......... .........
T Consensus 82 ---lavd~~~----------------------------~~ly~~d~~~~~I~~~~~~g~~~~~~~------~~~~~~P~~ 124 (316)
T 1ijq_A 82 ---LAVDWIH----------------------------SNIYWTDSVLGTVSVADTKGVKRKTLF------RENGSKPRA 124 (316)
T ss_dssp ---EEEETTT----------------------------TEEEEEETTTTEEEEEETTSSSEEEEE------ECTTCCEEE
T ss_pred ---EEEeecC----------------------------CeEEEEECCCCEEEEEeCCCCceEEEE------ECCCCCcce
Confidence 1233222 234333 45677888887654332211 112245788
Q ss_pred EEEeCCccEEEEEECCC-CEEEEEECCCCeEEEEec--CCCCEEEEEEeCC--EEEEEE-cCCeEEEEECCCCcEEEEec
Q 001349 987 LQVHNGLVYTASTSLDG-AAVKMWSTSNYNMVGSLP--TLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQKRQIRIETLQ 1060 (1094)
Q Consensus 987 l~fs~~~~~las~s~Dg-~~I~iwd~~~~~~~~~~~--~~~~v~~l~~spd--~l~sgs-~dg~I~vwd~~t~~~~~~l~ 1060 (1094)
++++|.+..+..+.... ..|..+++.. .....+. .-.....++++++ .++.+. ..+.|..+|...... ..+.
T Consensus 125 iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-~~~~ 202 (316)
T 1ijq_A 125 IVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTIL 202 (316)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE
T ss_pred EEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-EEEe
Confidence 99997444333333322 4788888753 3333332 3456889999975 555554 567999999875332 2221
Q ss_pred c--cCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1061 T--GTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1061 ~--~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
. .......++++. .+.++++-...+.|..++
T Consensus 203 ~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~ 235 (316)
T 1ijq_A 203 EDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSAN 235 (316)
T ss_dssp ECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred ecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEe
Confidence 1 122346788885 355555665667787776
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.22 E-value=0.38 Score=62.60 Aligned_cols=297 Identities=9% Similarity=0.016 Sum_probs=154.5
Q ss_pred CcEEEEeeCCCCeEEEeCCc--cee-ecccCCCcEEEEEEeC--------CEEEEEEC-CCeEEEEecCCCcceeEEEec
Q 001349 785 MVKVLSNGHDSSADFWNHRE--LVH-VDSSENGKVLSIACFR--------DKIFSGHS-DGTIKVWTGRGSILHLIQQIR 852 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~~--~~~-~~~~h~~~V~~l~fsp--------d~LaSgs~-Dg~I~vWd~~t~~~~~~~~l~ 852 (1094)
+..++.+. .+.+.+++... ... ....-.+.|.|+++.+ ++++.|.. |++|+|+++.+........+.
T Consensus 523 ~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~ 601 (1158)
T 3ei3_A 523 SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLG 601 (1158)
T ss_dssp SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECC
Confidence 44565554 56677766541 111 1112256899999874 38999997 999999999875322223332
Q ss_pred ccCCCeEEEEEec--CCCEEEEEeCCCcEEEEEC--CCCceEEEEecc-cCccceeeeec--CceEEEee-CCCeEEEEE
Q 001349 853 EHTKAVTGLAILQ--SGEMLYSGSLDKTARVWSI--GNEEIHCVQVHD-IKDQIQNLAVS--NSILCFIP-QGAGIKVHL 924 (1094)
Q Consensus 853 ~H~~~V~sv~fsp--dg~~LaSgs~DgtI~vWdi--~~~~~~~~~~~~-~~~~V~~v~~~--~~~~~fsp-dg~~l~~~~ 924 (1094)
+ .....++.+.. ...+|..|-.||.+.-+.+ .+|++.-..... ...++.-..+. +....|.. +..++. ..
T Consensus 602 ~-~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~li-y~ 679 (1158)
T 3ei3_A 602 G-EIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVI-YS 679 (1158)
T ss_dssp S-SCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEE-EE
T ss_pred C-CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEE-EE
Confidence 1 22344554432 3457889999998765544 455433221111 12232222111 11111222 112222 22
Q ss_pred eCCeEEEEcCC-CCceEE-EEe----CCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEE
Q 001349 925 RNGKTKLLNSS-KYPKCL-ALV----QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTAS 998 (1094)
Q Consensus 925 ~~g~i~l~~~~-~~v~~l-~~s----~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las 998 (1094)
.++.+.+-... ..+..+ .|+ ++.++..+ ++.+++..+..-..... +++ .-...+..++++|+...++.
T Consensus 680 ~~~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~----~~i-pL~~Tprri~y~~~~~~~~v 753 (1158)
T 3ei3_A 680 SNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHI----RTV-PLYESPRKICYQEVSQCFGV 753 (1158)
T ss_dssp SSSSEEEEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEE----EEE-ECSSEEEEEEEEGGGTEEEE
T ss_pred cCCceEEeccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeE----EEE-eCCCCceEEEEcCCCCEEEE
Confidence 23333322221 122222 332 34455443 55688887754322211 111 11235566666654433222
Q ss_pred EE-C-----------------------------------------------CCCEEEEEECCCCeEEEEec--CCCCEEE
Q 001349 999 TS-L-----------------------------------------------DGAAVKMWSTSNYNMVGSLP--TLSEVRA 1028 (1094)
Q Consensus 999 ~s-~-----------------------------------------------Dg~~I~iwd~~~~~~~~~~~--~~~~v~~ 1028 (1094)
+. . ..+.|++.|..+++.+..+. ....+.+
T Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~s 833 (1158)
T 3ei3_A 754 LSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALS 833 (1158)
T ss_dssp EEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEE
T ss_pred EEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEE
Confidence 11 0 01268888888888777666 3444555
Q ss_pred EEE---eC---CEEEEEE----------cCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1029 MVV---SS---ELVYLGC----------KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1029 l~~---sp---d~l~sgs----------~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
++. .. .++++|+ ..|.|++|++..++.....+....+.|++++-- +|+ |++|- ..+|++|+
T Consensus 834 v~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~-Lla~i-g~~l~vy~ 910 (1158)
T 3ei3_A 834 LVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGK-LLASI-NSTVRLYE 910 (1158)
T ss_dssp EEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTE-EEEEE-TTEEEEEE
T ss_pred EEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCE-EEEEc-CCEEEEEE
Confidence 554 22 3888886 348899999876554443333456789988743 454 44443 46899998
Q ss_pred C
Q 001349 1093 L 1093 (1094)
Q Consensus 1093 l 1093 (1094)
+
T Consensus 911 l 911 (1158)
T 3ei3_A 911 W 911 (1158)
T ss_dssp E
T ss_pred C
Confidence 6
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.39 Score=59.94 Aligned_cols=227 Identities=9% Similarity=-0.054 Sum_probs=126.7
Q ss_pred CCCCeEEEeCCc-ceeecccCCCcEEEEEEeC--C-EEEEEECCCeEEEEecCCCcc--eeEEEecccCCCeEEEEEecC
Q 001349 793 HDSSADFWNHRE-LVHVDSSENGKVLSIACFR--D-KIFSGHSDGTIKVWTGRGSIL--HLIQQIREHTKAVTGLAILQS 866 (1094)
Q Consensus 793 ~dg~I~vWd~~~-~~~~~~~h~~~V~~l~fsp--d-~LaSgs~Dg~I~vWd~~t~~~--~~~~~l~~H~~~V~sv~fspd 866 (1094)
....|+..++.. ....+......+.+++|.+ + ++++-...+.|+.+++.+... .....+.........|++.+.
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~ 481 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 481 (791)
T ss_dssp CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred cccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec
Confidence 345566666652 2222333456788999987 3 555556678899999875310 122333334456778999886
Q ss_pred CC-EEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC
Q 001349 867 GE-MLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ 945 (1094)
Q Consensus 867 g~-~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~ 945 (1094)
+. +.++-...+.|.+.+++......+.... -.....|+ +.|.+..|.+..+.
T Consensus 482 ~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~-l~~P~gIa-------VDp~~g~LYwtD~g------------------- 534 (791)
T 3m0c_C 482 HSNIYWTDSVLGTVSVADTKGVKRKTLFREN-GSKPRAIV-------VDPVHGFMYWTDWG------------------- 534 (791)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEEEECT-TCCEEEEE-------EETTTTEEEEEECS-------------------
T ss_pred CCcEEEEecCCCeEEEEeCCCCeEEEEEeCC-CCCcceEE-------EecCCCCEEEecCC-------------------
Confidence 65 4445556788999998865433322211 11222333 55544433222211
Q ss_pred CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecC---
Q 001349 946 GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT--- 1022 (1094)
Q Consensus 946 ~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~--- 1022 (1094)
..+.|...++........ +...-...+.|++++....+..+......|..+|+........+..
T Consensus 535 -------~~~~I~~~~~dG~~~~~l------v~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~ 601 (791)
T 3m0c_C 535 -------TPAKIKKGGLNGVDIYSL------VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR 601 (791)
T ss_dssp -------SSCEEEEEETTSCCEEEE------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTT
T ss_pred -------CCCeEEEEecCCCceEEE------EeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCc
Confidence 124566666653332211 1112246788999865444444444445899999865443333332
Q ss_pred CCCEEEEEEeCCEEEEEE-cCCeEEEEECCCCcEEEEe
Q 001349 1023 LSEVRAMVVSSELVYLGC-KGGTVEIWDQKRQIRIETL 1059 (1094)
Q Consensus 1023 ~~~v~~l~~spd~l~sgs-~dg~I~vwd~~t~~~~~~l 1059 (1094)
-....+|++..+.|+... ..+.|...|..+|+.+..+
T Consensus 602 l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 602 LAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp TSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred cCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 235678888888666655 5688999998887665555
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.27 Score=52.38 Aligned_cols=205 Identities=13% Similarity=0.092 Sum_probs=111.0
Q ss_pred EEecccCCCeEEEEEecCCCEEE-EEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCC
Q 001349 849 QQIREHTKAVTGLAILQSGEMLY-SGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNG 927 (1094)
Q Consensus 849 ~~l~~H~~~V~sv~fspdg~~La-Sgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g 927 (1094)
+.+.+-.+.+..++|+|+++.|+ +...++.|...|.. ++...............++ +.++|.+++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa-------~~~~g~~~v------ 85 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIE-------YIGDNQFVI------ 85 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEE-------ECSTTEEEE------
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeE-------EeCCCEEEE------
Confidence 35666677899999999766555 46678888888987 5422221111112233333 444443221
Q ss_pred eEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccce-ee--cCCCCCeEEEEEeCCccEEEEEECCC-
Q 001349 928 KTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHR-KL--LGKANPVHALQVHNGLVYTASTSLDG- 1003 (1094)
Q Consensus 928 ~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~-~~--~~h~~~V~sl~fs~~~~~las~s~Dg- 1003 (1094)
+.-.++.+.++++.....+....... .+ .........++|++.+..+..+...+
T Consensus 86 ----------------------s~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p 143 (255)
T 3qqz_A 86 ----------------------SDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNP 143 (255)
T ss_dssp ----------------------EETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSS
T ss_pred ----------------------EECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCC
Confidence 22233455555544333211100000 01 12345678999998774444443332
Q ss_pred CEEEEEECC-CCeEEEEec--------CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCcEEEEec--ccCC-----
Q 001349 1004 AAVKMWSTS-NYNMVGSLP--------TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQ--TGTS----- 1064 (1094)
Q Consensus 1004 ~~I~iwd~~-~~~~~~~~~--------~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~~~~~l~--~~h~----- 1064 (1094)
..|..|+-. ....+..+. .-..+.+++++|. +++....+..+.++|.. |+.+..+. .+..
T Consensus 144 ~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~ 222 (255)
T 3qqz_A 144 IEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHN 222 (255)
T ss_dssp EEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSC
T ss_pred ceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccc
Confidence 245555510 111111111 2245789999987 56666677889999976 44555442 1211
Q ss_pred -cceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001349 1065 -GKVQCMALDDNEEFLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1065 -~~I~~l~~Spdg~~L~sgs~DG~I~iW 1091 (1094)
...-.|+|.++|+ |+..++-+.++.|
T Consensus 223 ~~qpEGia~d~~G~-lyIvsE~n~~y~f 249 (255)
T 3qqz_A 223 IKQAEGVAMDASGN-IYIVSEPNRFYRF 249 (255)
T ss_dssp CCSEEEEEECTTCC-EEEEETTTEEEEE
T ss_pred cCCCCeeEECCCCC-EEEEcCCceEEEE
Confidence 2568999999998 4445777666555
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.096 Score=58.14 Aligned_cols=194 Identities=11% Similarity=0.201 Sum_probs=115.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC
Q 001349 866 SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ 945 (1094)
Q Consensus 866 dg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~ 945 (1094)
...+++....++-+.+||+....+ ..... ..++.+...+. |.-.|+.+-
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~G~~l---~~~~~-g~~nnVD~r~~---~~l~g~~~d------------------------ 87 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLDGKML---HSYNT-GKLNNVDIRYD---FPLNGKKVD------------------------ 87 (355)
T ss_dssp GGCEEEEEETTTEEEEEETTSCEE---EEECC-SCEEEEEEEEE---EEETTEEEE------------------------
T ss_pred CccEEEEEcCCCCEEEEcCCCcEE---EEccC-CCcccEEEecc---cccCCceEe------------------------
Confidence 345677777778899999954322 22221 45556553221 222222110
Q ss_pred CEEEEEE-c--CCeEEEEEC--CCCceeEEeccc-eeecCCCCCeEEEEE--eC-Cc-cEEEEEECCCCEEEEEECC---
Q 001349 946 GKVYCGC-Q--DGAIQEIDL--ATGTFATIQTGH-RKLLGKANPVHALQV--HN-GL-VYTASTSLDGAAVKMWSTS--- 1012 (1094)
Q Consensus 946 ~~l~sgs-~--Dg~I~iwDl--~~~~~~~~~~~~-~~~~~h~~~V~sl~f--s~-~~-~~las~s~Dg~~I~iwd~~--- 1012 (1094)
.+++.. . +++|.+|++ .++... ..... ..+..-...+..+++ ++ .+ .++.....+| .+..|++.
T Consensus 88 -la~as~R~~~~n~l~vf~iDp~~~~l~-~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G-~~~q~~l~~~~ 164 (355)
T 3amr_A 88 -IAAASNRSEGKNTIEIYAIDGKNGTLQ-SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEG-EFEQYELKADK 164 (355)
T ss_dssp -EEEEEECSTTCCEEEEEEECTTTCCEE-ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSS-EEEEEEEEECT
T ss_pred -EEEEeCCCCCCCeEEEEEECCCCCcee-eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCC-eEEEEEEEeCC
Confidence 122333 3 578999966 444422 21100 001011145666777 55 34 3666666675 89998882
Q ss_pred ----CCeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECC-----CCcEEEEecccCC-cceEEEEE--cCCCC-
Q 001349 1013 ----NYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQK-----RQIRIETLQTGTS-GKVQCMAL--DDNEE- 1077 (1094)
Q Consensus 1013 ----~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~-----t~~~~~~l~~~h~-~~I~~l~~--Spdg~- 1077 (1094)
+++.+++|...+.+..+.+++. .|+.+-++.-|..|+.. +++.+..+..++- ..+..|++ .++++
T Consensus 165 ~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~g 244 (355)
T 3amr_A 165 NGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKG 244 (355)
T ss_dssp TSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCE
T ss_pred CCcccceEEEEecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCE
Confidence 3467888888888999999976 89999999777777754 3556666533333 36888888 45665
Q ss_pred EEEEEe-CCCcEEEEeC
Q 001349 1078 FLVIGT-SDGRIQAWGL 1093 (1094)
Q Consensus 1078 ~L~sgs-~DG~I~iWdl 1093 (1094)
+|++++ .+++..+||.
T Consensus 245 yLivSsQG~~s~~Vydr 261 (355)
T 3amr_A 245 YLMASSQGNSSYAIYDR 261 (355)
T ss_dssp EEEEEEGGGTEEEEEES
T ss_pred EEEEEcCCCCEEEEEEC
Confidence 666665 5678999886
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.013 Score=73.48 Aligned_cols=196 Identities=9% Similarity=0.033 Sum_probs=108.6
Q ss_pred CeEEEEEe-cCCCEEEEEeC-C----CcEEEEECCCC-ceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeE
Q 001349 857 AVTGLAIL-QSGEMLYSGSL-D----KTARVWSIGNE-EIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKT 929 (1094)
Q Consensus 857 ~V~sv~fs-pdg~~LaSgs~-D----gtI~vWdi~~~-~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i 929 (1094)
.+....|| |||++|+-+.. + .+|+++|+.++ +.. ...+... .....|+|||+.++....+..
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l-------~~~~~~~---~~~~~WspDg~~l~y~~~d~~- 243 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI-------ADKVSGT---NGEIVWGPDHTSLFYVTKDET- 243 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC-------CCCEEEE---CSCCEECSSTTEEEEEEECTT-
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC-------CccccCc---eeeEEEecCCCEEEEEEECCC-
Confidence 67889999 99998875433 2 35999999997 511 1111111 223459999987655443210
Q ss_pred EEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCcee--EEeccceeecCCCCCeEEEEEeCCccEEEEEECC--CCE
Q 001349 930 KLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFA--TIQTGHRKLLGKANPVHALQVHNGLVYTASTSLD--GAA 1005 (1094)
Q Consensus 930 ~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~--~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~D--g~~ 1005 (1094)
.....|..+++.++... .++.. .+......+.|++|+.+++..+.+ ...
T Consensus 244 ----------------------~~~~~v~~~~lgt~~~~~~lv~~~-----~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 296 (751)
T 2xe4_A 244 ----------------------LRENKVWRHVMGKLQSEDVCLYEE-----HNPLFSAFMYKAADTNTLCIGSQSPETAE 296 (751)
T ss_dssp ----------------------CCEEEEEEEETTSCGGGCEEEEEC-----CCTTCEEEEEECTTSSEEEEEEECSSCEE
T ss_pred ----------------------CCCCEEEEEECCCCchhcEEEEec-----CCCceEEEEEECCCCCEEEEEecCCCCce
Confidence 00125777787765421 11110 122345678899999887765532 347
Q ss_pred EEEEECCCCe-EE--EEec--CCCCEEEEEEeC-CEEEEEE-cC----CeEEEEECCCC-cEEE-EecccCCcceEEEEE
Q 001349 1006 VKMWSTSNYN-MV--GSLP--TLSEVRAMVVSS-ELVYLGC-KG----GTVEIWDQKRQ-IRIE-TLQTGTSGKVQCMAL 1072 (1094)
Q Consensus 1006 I~iwd~~~~~-~~--~~~~--~~~~v~~l~~sp-d~l~sgs-~d----g~I~vwd~~t~-~~~~-~l~~~h~~~I~~l~~ 1072 (1094)
|.++|+.++. .. ..+. ......++.|+. +.++..+ .+ ..|..+|+.++ .... .+.......+..+.+
T Consensus 297 l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~ 376 (751)
T 2xe4_A 297 VHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV 376 (751)
T ss_dssp EEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE
T ss_pred EEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE
Confidence 8889988752 12 3333 234456666443 4444443 32 36777887753 2122 232111124566666
Q ss_pred cCCCCEEEEEeCCCcEEEE
Q 001349 1073 DDNEEFLVIGTSDGRIQAW 1091 (1094)
Q Consensus 1073 Spdg~~L~sgs~DG~I~iW 1091 (1094)
. .+.++++...+|..++|
T Consensus 377 ~-~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 377 R-SNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp C-SSEEEEEEEETTEEEEE
T ss_pred E-CCEEEEEEEeCCEEEEE
Confidence 5 33455677778865554
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.013 Score=60.53 Aligned_cols=186 Identities=15% Similarity=0.104 Sum_probs=122.0
Q ss_pred CCcHHHHHHHHhcC----hHHHHHHHHhcCCChHHHHHhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcc
Q 001349 356 ESDVERIVALFKKG----LLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEE 431 (1094)
Q Consensus 356 ~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~ 431 (1094)
+..++.|+.+|+.+ +..|+..|..+.. -+.+|.|+..|...+.. -+..|+..|..+
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-------~~~~~~L~~~l~~~~~~-------vr~~a~~aL~~~------ 77 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAW-------VRRAAADALGQI------ 77 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSCHH-------HHHHHHHHHHHH------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------ccHHHHHHHHHcCCCHH-------HHHHHHHHHHhh------
Confidence 44678888888776 5567777776654 13458888888754211 134555555543
Q ss_pred cccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHH
Q 001349 432 SIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFL 511 (1094)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 511 (1094)
.....++.|+..+...+...|..|+..|...- +...++.|+.++...+...|..|+..|
T Consensus 78 ----------~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL 136 (211)
T 3ltm_A 78 ----------GDERAVEPLIKALKDEDGWVRQSAAVALGQIG-----------DERAVEPLIKALKDEDWFVRIAAAFAL 136 (211)
T ss_dssp ----------CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-----------CGGGHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred ----------CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 24578899999999999999998888776441 234567788888777777777777777
Q ss_pred HHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcC
Q 001349 512 SELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNS 591 (1094)
Q Consensus 512 ~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~ 591 (1094)
..+- .-..+..|..+++...+.-+..++..|.++.- +++++.|...+.++
T Consensus 137 ~~~~-------------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~ 186 (211)
T 3ltm_A 137 GEIG-------------------DERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG 186 (211)
T ss_dssp HHHC-------------------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC
T ss_pred HHcC-------------------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC
Confidence 6651 11233345556655555555667777777742 78999999998865
Q ss_pred CChHHHHHHHHHHHhccccccc
Q 001349 592 DYPAAQLAAAKTIVSLQGRFTT 613 (1094)
Q Consensus 592 ~~~~~~~~~~~~~~~l~g~~s~ 613 (1094)
+ +.++..|+.+|..+++....
T Consensus 187 ~-~~vr~~A~~aL~~~~~~~~~ 207 (211)
T 3ltm_A 187 T-GFARKVAVNYLETHKSFNHH 207 (211)
T ss_dssp C-HHHHHHHHHHHHC-------
T ss_pred C-HHHHHHHHHHHHhcCCCCCC
Confidence 4 67899999999998876543
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.36 Score=53.46 Aligned_cols=107 Identities=16% Similarity=0.216 Sum_probs=68.2
Q ss_pred CCCCeEEEEEeCCccEEEEEECCCCEEEEEEC--CCCeEEEEecCCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEE
Q 001349 980 KANPVHALQVHNGLVYTASTSLDGAAVKMWST--SNYNMVGSLPTLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRI 1056 (1094)
Q Consensus 980 h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~--~~~~~~~~~~~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~ 1056 (1094)
+...+..+.+.+++.+++.+. +|...+-+|- .+.+.+. ......+..+.+.++ .++.++.+|.+++++...++..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~-~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW 238 (327)
T 2xbg_A 161 AIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHN-RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENW 238 (327)
T ss_dssp CCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEE-CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEE
T ss_pred CCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECC-CCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCee
Confidence 345788999998888776653 4445555553 3444442 234567888888877 6667778898888754434443
Q ss_pred EEeccc---CCcceEEEEEcCCCCEEEEEeCCCcEE
Q 001349 1057 ETLQTG---TSGKVQCMALDDNEEFLVIGTSDGRIQ 1089 (1094)
Q Consensus 1057 ~~l~~~---h~~~I~~l~~Spdg~~L~sgs~DG~I~ 1089 (1094)
..+..+ +...+.++++.+++..++++. +|.|.
T Consensus 239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~ 273 (327)
T 2xbg_A 239 GELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALL 273 (327)
T ss_dssp CCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCEE
T ss_pred EeccCCcccCCcceEEEEecCCCEEEEEeC-CCeEE
Confidence 333222 223588999998887666654 66663
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=96.98 E-value=0.33 Score=53.61 Aligned_cols=217 Identities=11% Similarity=0.054 Sum_probs=117.7
Q ss_pred CCeEEEEecCCCcceeEEEecccCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCce-EEEEecccCccceeeeecCc
Q 001349 832 DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVWSIGNEEI-HCVQVHDIKDQIQNLAVSNS 909 (1094)
Q Consensus 832 Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspd-g~~LaSgs~DgtI~vWdi~~~~~-~~~~~~~~~~~V~~v~~~~~ 909 (1094)
...|+.+|+.+........+. ....+..++|++. +.+.++-...+.|..++.+++.. ..+.... -. .+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~-l~-------~p~ 82 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG-LL-------SPD 82 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEEC-CS-------CCC
T ss_pred cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCC-CC-------Ccc
Confidence 467899999876311122222 2345678999985 44555555677888888876521 1111000 00 111
Q ss_pred eEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEE-EEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEE
Q 001349 910 ILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYC-GCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQ 988 (1094)
Q Consensus 910 ~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~s-gs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~ 988 (1094)
.+++.+.+. .|+. -...+.|.++++........ ..........++
T Consensus 83 glavd~~~g----------------------------~ly~~d~~~~~I~~~~~dG~~~~~l------~~~~~~~P~gia 128 (318)
T 3sov_A 83 GLACDWLGE----------------------------KLYWTDSETNRIEVSNLDGSLRKVL------FWQELDQPRAIA 128 (318)
T ss_dssp EEEEETTTT----------------------------EEEEEETTTTEEEEEETTSCSCEEE------ECSSCSSEEEEE
T ss_pred EEEEEcCCC----------------------------eEEEEECCCCEEEEEECCCCcEEEE------EeCCCCCccEEE
Confidence 222333222 3333 33456788888764432211 112234568899
Q ss_pred EeCCccEEEEEE-CCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEE-EcCCeEEEEECCCCcEEEEecccC
Q 001349 989 VHNGLVYTASTS-LDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLG-CKGGTVEIWDQKRQIRIETLQTGT 1063 (1094)
Q Consensus 989 fs~~~~~las~s-~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sg-s~dg~I~vwd~~t~~~~~~l~~~h 1063 (1094)
++|.+.++..+. .....|...++.......... .-.....++++++ .++.+ +..+.|..+|+........+ .+.
T Consensus 129 vdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~-~~~ 207 (318)
T 3sov_A 129 LDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV-KGS 207 (318)
T ss_dssp EEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSC
T ss_pred EeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEe-cCC
Confidence 997544333333 223478888875432222222 3456789999975 55555 45689999998754332222 233
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1064 SGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1064 ~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
.....++++.. +.++++-...+.|..++.
T Consensus 208 ~~~P~glav~~-~~lywtd~~~~~V~~~~~ 236 (318)
T 3sov_A 208 LPHPFALTLFE-DILYWTDWSTHSILACNK 236 (318)
T ss_dssp CSCEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred CCCceEEEEeC-CEEEEEecCCCeEEEEEC
Confidence 44567788753 345555555677777664
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.52 Score=55.11 Aligned_cols=246 Identities=12% Similarity=0.080 Sum_probs=129.1
Q ss_pred cEEEEEEeC-C--EEEEE-ECCCeEEEEecCCCcceeEEEec-ccCCCeEEEEE-------ecCCCEEEEEeCCC-c---
Q 001349 815 KVLSIACFR-D--KIFSG-HSDGTIKVWTGRGSILHLIQQIR-EHTKAVTGLAI-------LQSGEMLYSGSLDK-T--- 878 (1094)
Q Consensus 815 ~V~~l~fsp-d--~LaSg-s~Dg~I~vWd~~t~~~~~~~~l~-~H~~~V~sv~f-------spdg~~LaSgs~Dg-t--- 878 (1094)
....|+|+| + .|+.+ ...+.|++.|..++....+.... ........++| +++|++|+.+...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 567899997 2 44444 44577999999987322222211 12235899999 99999777776654 2
Q ss_pred ---EEEEECCC-CceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcC
Q 001349 879 ---ARVWSIGN-EEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQD 954 (1094)
Q Consensus 879 ---I~vWdi~~-~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~D 954 (1094)
|.+.+... +.... ......+... -.+..+++.|++..| +++-..+
T Consensus 220 ~~~V~~i~r~~~G~~~~---~~~~~~v~~~-~~p~giavdp~~g~L---------------------------Yvtd~~~ 268 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDD---RSDIQLIAAY-KQCNGATIHPINGEL---------------------------YFNSYEK 268 (496)
T ss_dssp EEEEEEEECCTTSCCST---TSCEEEEEEE-SCCCCEEECTTTCCE---------------------------EEEETTT
T ss_pred CceEEEEecCCCCceee---cccceeeccC-CCceEEEEcCCCCeE---------------------------EEEECCC
Confidence 44554333 11100 0000000000 011122234422221 3344466
Q ss_pred CeEEEEECC-------CCceeEEecc-----cee--ecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEEC--CCCeEE-
Q 001349 955 GAIQEIDLA-------TGTFATIQTG-----HRK--LLGKANPVHALQVHNGLVYTASTSLDGAAVKMWST--SNYNMV- 1017 (1094)
Q Consensus 955 g~I~iwDl~-------~~~~~~~~~~-----~~~--~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~--~~~~~~- 1017 (1094)
+.|..+|+. ++........ ... ..+.....+.++|+|++.++..+....+.|+.+|. ..+...
T Consensus 269 g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~ 348 (496)
T 3kya_A 269 GQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFIT 348 (496)
T ss_dssp TEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECC
T ss_pred CEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecc
Confidence 778899987 5543000000 000 11223456799999999855555445568988654 333220
Q ss_pred -EEecC----C------------CCEE-EEEEe-------CC-EEEEE-EcCCeEEEEECCCCcEEEEecc---------
Q 001349 1018 -GSLPT----L------------SEVR-AMVVS-------SE-LVYLG-CKGGTVEIWDQKRQIRIETLQT--------- 1061 (1094)
Q Consensus 1018 -~~~~~----~------------~~v~-~l~~s-------pd-~l~sg-s~dg~I~vwd~~t~~~~~~l~~--------- 1061 (1094)
..+.+ . .... .+++. ++ .|+++ +.++.|+.++ .+|. +.++-.
T Consensus 349 ~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~ 426 (496)
T 3kya_A 349 PYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLAD 426 (496)
T ss_dssp CEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHH
T ss_pred cEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccC
Confidence 12211 0 1244 55664 34 34444 4678999998 4554 444411
Q ss_pred ----cC----------CcceEEEEEcCC-CCEEEEEeCCCcEEEEeC
Q 001349 1062 ----GT----------SGKVQCMALDDN-EEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1062 ----~h----------~~~I~~l~~Spd-g~~L~sgs~DG~I~iWdl 1093 (1094)
|. -.....|+++++ |.+.++=+.+++|+.+++
T Consensus 427 ~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~ 473 (496)
T 3kya_A 427 GNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISM 473 (496)
T ss_dssp SCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEEC
Confidence 10 124779999997 766666666788988875
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.93 Score=55.05 Aligned_cols=223 Identities=11% Similarity=0.041 Sum_probs=128.7
Q ss_pred CCCCeEEEeCCcc--eee-cccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecC
Q 001349 793 HDSSADFWNHREL--VHV-DSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS 866 (1094)
Q Consensus 793 ~dg~I~vWd~~~~--~~~-~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspd 866 (1094)
..+.|+..++... ... ....-..+..++|++. .+++-..++.|..+++.+.. ....+.........+++.+.
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~--~~~v~~~g~~~P~GlAvD~~ 90 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA--LEHVVEFGLDYPEGMAVDWL 90 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECSSCSCCCEEEEETT
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC--cEEEEeCCCCCcceEEEEeC
Confidence 5667888887632 111 1223456889999974 55566678999999988763 22223322345678899875
Q ss_pred CCEE-EEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC
Q 001349 867 GEML-YSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ 945 (1094)
Q Consensus 867 g~~L-aSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~ 945 (1094)
+..| ++-...+.|.+.++++.....+..... .....+ ++.|....+.+..+.
T Consensus 91 ~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l-~~P~~i-------avdp~~G~lY~tD~g------------------- 143 (628)
T 4a0p_A 91 GKNLYWADTGTNRIEVSKLDGQHRQVLVWKDL-DSPRAL-------ALDPAEGFMYWTEWG------------------- 143 (628)
T ss_dssp TTEEEEEETTTTEEEEEETTSTTCEEEECSSC-CCEEEE-------EEETTTTEEEEEECS-------------------
T ss_pred CCEEEEEECCCCEEEEEecCCCcEEEEEeCCC-CCcccE-------EEccCCCeEEEeCCC-------------------
Confidence 5544 555556788888887654322221111 112222 255443333222211
Q ss_pred CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCC
Q 001349 946 GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLS 1024 (1094)
Q Consensus 946 ~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~ 1024 (1094)
..+.|...++........ ...-...+.+++++++..+..+....+.|..+|+..... ..+. ...
T Consensus 144 -------~~~~I~r~~~dG~~~~~l-------~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~ 208 (628)
T 4a0p_A 144 -------GKPKIDRAAMDGSERTTL-------VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLP 208 (628)
T ss_dssp -------SSCEEEEEETTSCSCEEE-------ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCS
T ss_pred -------CCCEEEEEeCCCCceEEE-------ECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCC
Confidence 134555566554332211 112346788999986555555544445899999865433 2232 345
Q ss_pred CEEEEEEeCCEEEEEE-cCCeEEEEECCCCcEEEEe
Q 001349 1025 EVRAMVVSSELVYLGC-KGGTVEIWDQKRQIRIETL 1059 (1094)
Q Consensus 1025 ~v~~l~~spd~l~sgs-~dg~I~vwd~~t~~~~~~l 1059 (1094)
...++++..+.++... ..+.|...|..+|+....+
T Consensus 209 ~P~glav~~~~ly~tD~~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 209 HPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTII 244 (628)
T ss_dssp CEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CceEEEEECCEEEEecCCCCEEEEEECCCCCceEEE
Confidence 5678999888766665 4789999998777644444
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=96.93 E-value=0.54 Score=53.74 Aligned_cols=219 Identities=12% Similarity=0.044 Sum_probs=119.8
Q ss_pred EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEE-EEeCCCcEEEEECCCCc----eEEEEecccCc
Q 001349 825 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLY-SGSLDKTARVWSIGNEE----IHCVQVHDIKD 899 (1094)
Q Consensus 825 ~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~La-Sgs~DgtI~vWdi~~~~----~~~~~~~~~~~ 899 (1094)
+|+.+. ...|+..|+.+... ...+ .....+..++|++.+..|+ +-...+.|+.+++++.. ...+... .
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~--~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~-~-- 157 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEY--TSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-D-- 157 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSC--EEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS-S--
T ss_pred eeEEec-cceeEEEccCCcce--eEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC-C--
Confidence 444433 47888889887632 2223 3456788999998655554 44456788888876521 1111000 0
Q ss_pred cceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEe--CCEEEEE-EcCCeEEEEECCCCceeEEecccee
Q 001349 900 QIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV--QGKVYCG-CQDGAIQEIDLATGTFATIQTGHRK 976 (1094)
Q Consensus 900 ~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s--~~~l~sg-s~Dg~I~iwDl~~~~~~~~~~~~~~ 976 (1094)
-..+..+++. .+.|+.. ...+.|.+.|+.........
T Consensus 158 -----------------------------------~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~----- 197 (400)
T 3p5b_L 158 -----------------------------------IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF----- 197 (400)
T ss_dssp -----------------------------------CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEE-----
T ss_pred -----------------------------------CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEE-----
Confidence 0112233332 2334333 34567888887655433221
Q ss_pred ecCCCCCeEEEEEeCCc-cEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEE-cCCeEEEEECC
Q 001349 977 LLGKANPVHALQVHNGL-VYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQK 1051 (1094)
Q Consensus 977 ~~~h~~~V~sl~fs~~~-~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs-~dg~I~vwd~~ 1051 (1094)
.........++++|.+ .+..+-..+...|...++........+. .-.....|+++++ .|+.+. ..+.|..+|+.
T Consensus 198 -~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d 276 (400)
T 3p5b_L 198 -RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 276 (400)
T ss_dssp -ECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred -eCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC
Confidence 1123457889999754 3333332222478888886443333333 3467899999975 565554 56889999987
Q ss_pred CCcEEEEecc-cCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1052 RQIRIETLQT-GTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1052 t~~~~~~l~~-~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
.......+.. +......++++. .+.++++-...+.|..+|
T Consensus 277 G~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~ 317 (400)
T 3p5b_L 277 GGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSAN 317 (400)
T ss_dssp SCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEE
T ss_pred CCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEE
Confidence 5443333311 122345677773 344555655667777766
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.27 Score=55.15 Aligned_cols=73 Identities=14% Similarity=0.169 Sum_probs=47.9
Q ss_pred CCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEec---ccCCCeEEEEEecC---CCEEEEEeC-C-----CcE
Q 001349 813 NGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIR---EHTKAVTGLAILQS---GEMLYSGSL-D-----KTA 879 (1094)
Q Consensus 813 ~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~---~H~~~V~sv~fspd---g~~LaSgs~-D-----gtI 879 (1094)
-.....++|.|+ .++.+..+|.|++++ ++....+..+. ........|+|+|+ +..|+.+.. + +.|
T Consensus 30 l~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp CSCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 345689999997 666667789999998 44323333322 22456889999998 555554433 2 567
Q ss_pred EEEECCCC
Q 001349 880 RVWSIGNE 887 (1094)
Q Consensus 880 ~vWdi~~~ 887 (1094)
..|+...+
T Consensus 108 ~r~~~~~~ 115 (352)
T 2ism_A 108 VRLRHLGE 115 (352)
T ss_dssp EEEEECSS
T ss_pred EEEEeCCC
Confidence 78887654
|
| >2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00089 Score=56.51 Aligned_cols=48 Identities=10% Similarity=0.266 Sum_probs=39.2
Q ss_pred ceeccCccccccCcEEc-CCcccccHHhHHHHHHhC-CCCCCCCCcCCCC
Q 001349 163 DFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERG-NSSCPITRQKLSS 210 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~-~cGhtfc~~ci~~~~~~~-~~~CP~c~~~~~~ 210 (1094)
--.|.||.+++..-..- .|||.|=..||.+||+.. ...||.|++....
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 35699999999855443 799999999999999863 2679999988653
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.03 Score=68.88 Aligned_cols=113 Identities=8% Similarity=0.085 Sum_probs=70.0
Q ss_pred ccccc-cCcEEEEeeCCC-----------CeEEEeCCcc----e-eecccCCCcEEEEEEeCC--EEEEEE-CCCeEEEE
Q 001349 779 SPLAF-EMVKVLSNGHDS-----------SADFWNHREL----V-HVDSSENGKVLSIACFRD--KIFSGH-SDGTIKVW 838 (1094)
Q Consensus 779 ~~~~~-d~~~l~s~s~dg-----------~I~vWd~~~~----~-~~~~~h~~~V~~l~fspd--~LaSgs-~Dg~I~vW 838 (1094)
..+.+ ++..++.|+.++ .+.+||..+. . .....+.....++++..+ +++.|+ .++.+.+|
T Consensus 191 ~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~y 270 (656)
T 1k3i_A 191 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLY 270 (656)
T ss_dssp EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEE
T ss_pred EEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEe
Confidence 33444 677778877643 4778887621 1 111223333445666553 777776 45689999
Q ss_pred ecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEe-CC-----CcEEEEECCCCceEEE
Q 001349 839 TGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGS-LD-----KTARVWSIGNEEIHCV 892 (1094)
Q Consensus 839 d~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs-~D-----gtI~vWdi~~~~~~~~ 892 (1094)
|..++.+..+..+... ..-.++++.++|++++.|+ .+ ..+.+||..+++...+
T Consensus 271 d~~t~~W~~~~~~~~~-R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~ 329 (656)
T 1k3i_A 271 DSSSDSWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL 329 (656)
T ss_dssp EGGGTEEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEE
T ss_pred cCcCCceeECCCCCcc-ccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeC
Confidence 9998865554433221 1223456667999999998 44 5799999998765443
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.027 Score=57.51 Aligned_cols=183 Identities=15% Similarity=0.127 Sum_probs=119.8
Q ss_pred cHHHHHHHHhcC----hHHHHHHHHhcCCChHHHHHhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccc
Q 001349 358 DVERIVALFKKG----LLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESI 433 (1094)
Q Consensus 358 ~~~~L~~lLk~g----~~~Aa~~l~~L~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~ 433 (1094)
..+.++.+|+.+ +..|+..|..+... +.++.|+..|...... -+..|+..|..+
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~-------~~~~~L~~~l~~~~~~-------vr~~a~~~L~~~-------- 72 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGDE-------RAVEPLIKALKDEDAW-------VRRAAADALGQI-------- 72 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-------GGHHHHHHHTTCSSHH-------HHHHHHHHHHHH--------
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCCh-------hHHHHHHHHHcCCCHH-------HHHHHHHHHHhh--------
Confidence 457777888776 56677777766542 3458888888644211 134455545433
Q ss_pred cccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHH
Q 001349 434 VSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSE 513 (1094)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~e 513 (1094)
....+++.|++.+...+...|..|+..|...- +...++.++.++...+...|..|+..|..
T Consensus 73 --------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 133 (201)
T 3ltj_A 73 --------GDERAVEPLIKALKDEDGWVRQSAAVALGQIG-----------DERAVEPLIKALKDEDWFVRIAAAFALGE 133 (201)
T ss_dssp --------CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred --------CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 23468899999999999999999888776541 22356677777776666677777777765
Q ss_pred HHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCC
Q 001349 514 LVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDY 593 (1094)
Q Consensus 514 l~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~~ 593 (1094)
+-. -.....|..+++...++-+..++..|.++. .+++++.|...+.+. .
T Consensus 134 ~~~-------------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~-----------~~~~~~~L~~~l~d~-~ 182 (201)
T 3ltj_A 134 IGD-------------------ERAVEPLIKALKDEDGWVRQSAADALGEIG-----------GERVRAAMEKLAETG-T 182 (201)
T ss_dssp HTC-------------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-----------SHHHHHHHHHHHHHC-C
T ss_pred hCC-------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------chhHHHHHHHHHhCC-C
Confidence 511 122334555665555555566777777763 278999999999765 4
Q ss_pred hHHHHHHHHHHHhcccccc
Q 001349 594 PAAQLAAAKTIVSLQGRFT 612 (1094)
Q Consensus 594 ~~~~~~~~~~~~~l~g~~s 612 (1094)
..++..|+.+|..+.+..|
T Consensus 183 ~~vr~~A~~aL~~l~~~~~ 201 (201)
T 3ltj_A 183 GFARKVAVNYLETHKSLIS 201 (201)
T ss_dssp HHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHHhhcC
Confidence 6789999999999886643
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.58 Score=52.46 Aligned_cols=247 Identities=11% Similarity=0.062 Sum_probs=121.1
Q ss_pred CCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEec---ccCCCeEEEEEecC---CCEEEEEeC----C----C
Q 001349 813 NGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIR---EHTKAVTGLAILQS---GEMLYSGSL----D----K 877 (1094)
Q Consensus 813 ~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~---~H~~~V~sv~fspd---g~~LaSgs~----D----g 877 (1094)
-.....++|.|+ .|+.+..+|.|+++| .++. ..+..+. ........|+|+|+ +..|+.+.. + +
T Consensus 28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTERPGRLVLIS-PSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEEEETTTEEEEEC-SSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 345789999987 777778889999997 3453 3333321 22356889999997 445544432 3 5
Q ss_pred cEEEEECCCC--ce---EEE-EecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEE
Q 001349 878 TARVWSIGNE--EI---HCV-QVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCG 951 (1094)
Q Consensus 878 tI~vWdi~~~--~~---~~~-~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sg 951 (1094)
.|..|+...+ .. +.+ .... .. -...+..+.|.|||...++....+.. .... .. .
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~-~~----~~h~~~~l~~~pDG~Lyvt~G~~~~~---~~~~-------d~-----~ 165 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIP-GA----YIHNGGRIRFGPDGMLYITTGDAADP---RLAQ-------DL-----S 165 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEE-CC----SSCCCCCEEECTTSCEEEECCCTTCG---GGGT-------CT-----T
T ss_pred EEEEEEECCCCcCcCccEEEEEcCC-CC----CCcCCceEEECCCCcEEEEECCCCCC---cccc-------CC-----C
Confidence 6777776654 11 111 1111 00 00123345688888644332211110 0000 00 0
Q ss_pred EcCCeEEEEECCCCceeE--Ee-ccceeecCCCCCeEEEEEeC-CccEEEEEECCC--CEEEEEECCC------------
Q 001349 952 CQDGAIQEIDLATGTFAT--IQ-TGHRKLLGKANPVHALQVHN-GLVYTASTSLDG--AAVKMWSTSN------------ 1013 (1094)
Q Consensus 952 s~Dg~I~iwDl~~~~~~~--~~-~~~~~~~~h~~~V~sl~fs~-~~~~las~s~Dg--~~I~iwd~~~------------ 1013 (1094)
...|.|.-+|... +... .+ ....-..+|. ....++|++ ++.+.++-...+ ..|.+.....
T Consensus 166 ~~~G~I~ri~~dG-~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~ 243 (354)
T 3a9g_A 166 SLAGKILRVDEEG-RPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAG 243 (354)
T ss_dssp CCSSEEEEECTTS-CCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCC
T ss_pred CCCeEEEEEcCCC-CCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCC
Confidence 1123344444321 1000 00 0000112232 345788887 555544432211 1233322110
Q ss_pred ----CeEEEEe-cCCCCEEEEEEe--------CC-EEEEEEcCCeEEEEECCCC-cEE--EEecccCCcceEEEEEcCCC
Q 001349 1014 ----YNMVGSL-PTLSEVRAMVVS--------SE-LVYLGCKGGTVEIWDQKRQ-IRI--ETLQTGTSGKVQCMALDDNE 1076 (1094)
Q Consensus 1014 ----~~~~~~~-~~~~~v~~l~~s--------pd-~l~sgs~dg~I~vwd~~t~-~~~--~~l~~~h~~~I~~l~~Spdg 1076 (1094)
..++..+ ..+.....++|. .. ++++....+.|...++... +.. ..+..+....+..+++.|||
T Consensus 244 ~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG 323 (354)
T 3a9g_A 244 RGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDG 323 (354)
T ss_dssp CTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTS
T ss_pred CCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCC
Confidence 0123333 234567788883 22 4444445678888888753 322 23322334579999999999
Q ss_pred CEEEEEe
Q 001349 1077 EFLVIGT 1083 (1094)
Q Consensus 1077 ~~L~sgs 1083 (1094)
.+.++..
T Consensus 324 ~lyv~~~ 330 (354)
T 3a9g_A 324 GILISTS 330 (354)
T ss_dssp CEEEEEC
T ss_pred cEEEEEe
Confidence 8776664
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.38 Score=55.67 Aligned_cols=102 Identities=9% Similarity=0.157 Sum_probs=59.5
Q ss_pred cEEEEeeCCCCeEEEeCC-cceeecccCCCcEEEEEEeCC-EEEEEECCC----e-EEEEecCCCcceeEEEecccCCCe
Q 001349 786 VKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD-KIFSGHSDG----T-IKVWTGRGSILHLIQQIREHTKAV 858 (1094)
Q Consensus 786 ~~l~s~s~dg~I~vWd~~-~~~~~~~~h~~~V~~l~fspd-~LaSgs~Dg----~-I~vWd~~t~~~~~~~~l~~H~~~V 858 (1094)
..|..+...+.|+.++.. .....+.........++|+++ .|+.+...+ . +...+...+ ......+. .....
T Consensus 153 g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~-~~~~~~~~-~~~~P 230 (433)
T 4hw6_A 153 DDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG-FTERLSLC-NARGA 230 (433)
T ss_dssp CEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT-TCCEEEEE-ECSSB
T ss_pred CEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC-eecccccc-ccCCC
Confidence 344444444889999884 334444445567899999986 344444321 2 333333322 11111221 23445
Q ss_pred EEEEEec-CCCEEEEEeCCCcEEEEECCCCce
Q 001349 859 TGLAILQ-SGEMLYSGSLDKTARVWSIGNEEI 889 (1094)
Q Consensus 859 ~sv~fsp-dg~~LaSgs~DgtI~vWdi~~~~~ 889 (1094)
..++++| +|.+.++-..++.|+.+|..++..
T Consensus 231 ~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~ 262 (433)
T 4hw6_A 231 KTCAVHPQNGKIYYTRYHHAMISSYDPATGTL 262 (433)
T ss_dssp CCCEECTTTCCEEECBTTCSEEEEECTTTCCE
T ss_pred CEEEEeCCCCeEEEEECCCCEEEEEECCCCeE
Confidence 6788999 677666666778899999987754
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=96.57 E-value=1.6 Score=56.69 Aligned_cols=228 Identities=14% Similarity=0.126 Sum_probs=123.4
Q ss_pred CCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecC------CCEEEEEeC-CCcEEEEECC
Q 001349 813 NGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS------GEMLYSGSL-DKTARVWSIG 885 (1094)
Q Consensus 813 ~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspd------g~~LaSgs~-DgtI~vWdi~ 885 (1094)
...|...+.++.+++.++ ++.+.++.+..+........ .-...|.|+++.|. +++++.|.+ |++|+|+++.
T Consensus 513 ~~~I~~As~n~~~vvva~-g~~l~~fel~~~~L~~~~~~-~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~ 590 (1158)
T 3ei3_A 513 AKNISVASCNSSQVVVAV-GRALYYLQIHPQELRQISHT-EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLP 590 (1158)
T ss_dssp CCCCCEEEECSSEEEEEE-TTEEEEEEEETTEEEEEEEE-ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETT
T ss_pred CCEEEEEEeCCCEEEEEE-CCEEEEEEeeCCceeeeccc-CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECC
Confidence 346888887777666665 67888888876643333332 24568999999863 479999997 9999999998
Q ss_pred CCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEEC--C
Q 001349 886 NEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDL--A 963 (1094)
Q Consensus 886 ~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl--~ 963 (1094)
+-+..............++. +. ..++. -.+.+|-.||.+..+.+ .
T Consensus 591 ~l~~~~~~~L~~~~~p~si~-------l~---------~~~~~-----------------~~L~igl~dG~l~~~~~d~~ 637 (1158)
T 3ei3_A 591 SFELLHKEMLGGEIIPRSIL-------MT---------TFESS-----------------HYLLCALGDGALFYFGLNIE 637 (1158)
T ss_dssp TCCEEEEEECCSSCCEEEEE-------EE---------EETTE-----------------EEEEEEETTSEEEEEEECTT
T ss_pred CCCeEEEEECCCCCCCcEEE-------EE---------EeCCC-----------------cEEEEEeCCCeEEEEEEcCC
Confidence 75422222221111222221 11 00111 13778888888765544 4
Q ss_pred CCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEE-EEecCCCCEEEEEEe----CCEEEE
Q 001349 964 TGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMV-GSLPTLSEVRAMVVS----SELVYL 1038 (1094)
Q Consensus 964 ~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~-~~~~~~~~v~~l~~s----pd~l~s 1038 (1094)
+|...... ..+.| ..++.-..+...+...+-+..+. ...+|... ++.. ..+....--....|+ |+.++.
T Consensus 638 tg~l~d~r---~~~LG-~~pv~L~~~~~~~~~~V~a~s~r-p~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g~v~ 711 (1158)
T 3ei3_A 638 TGLLSDRK---KVTLG-TQPTVLRTFRSLSTTNVFACSDR-PTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDSLAL 711 (1158)
T ss_dssp TCCEEEEE---EEECC-SSCCEEEEEESSSCEEEEEESSS-CEEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTEEEE
T ss_pred CCccccce---eEEcC-CCceEEEEEeeCCceeEEEECCC-CEEEEEcC-CceEEeccChHHhceEeccCcccCCCcEEE
Confidence 55443221 12333 24555444543332222222232 33444433 3322 222222111233343 456665
Q ss_pred EEcCCeEEEEECCCCc--EEEEecccCCcceEEEEEcCCCCEEEEEeC
Q 001349 1039 GCKGGTVEIWDQKRQI--RIETLQTGTSGKVQCMALDDNEEFLVIGTS 1084 (1094)
Q Consensus 1039 gs~dg~I~vwd~~t~~--~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~ 1084 (1094)
.+ ++.++|..+.... .+.++. -...+..++++|+.+.++.+..
T Consensus 712 ~~-~~~LrI~~i~~~~~~~~~~ip--L~~Tprri~y~~~~~~~~v~~~ 756 (1158)
T 3ei3_A 712 AN-NSTLTIGTIDEIQKLHIRTVP--LYESPRKICYQEVSQCFGVLSS 756 (1158)
T ss_dssp EC-SSCEEEEEECCSSSEEEEEEE--CSSEEEEEEEEGGGTEEEEEEE
T ss_pred Ec-CCceEEEEecccCCeeEEEEe--CCCCceEEEEcCCCCEEEEEEE
Confidence 55 4559998875433 334443 3457899999999887766553
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=96.55 E-value=1.6 Score=49.61 Aligned_cols=253 Identities=13% Similarity=0.081 Sum_probs=143.4
Q ss_pred CCeEEEeCCcceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEE
Q 001349 795 SSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYS 872 (1094)
Q Consensus 795 g~I~vWd~~~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaS 872 (1094)
..|.|-|........+..- .--+...+|. .+|--. ..++.|+|+++. ..++.+.- ...|.--.|-.+ +.|+-
T Consensus 48 ~~vvIiDl~~~~~~~rrpi-~AdsAIMnP~~~iiALra-g~~lQiFnle~K--~klks~~~-~e~VvfWkWis~-~~l~l 121 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIRRPI-SADSAIMNPASKVIALKA-GKTLQIFNIEMK--SKMKAHTM-TDDVTFWKWISL-NTVAL 121 (494)
T ss_dssp CEEEEEETTSTTSCEEEEC-CCSEEEECSSSSCEEEEE-TTEEEEEETTTT--EEEEEEEC-SSCCCEEEEEET-TEEEE
T ss_pred CeEEEEECCCCCcceeccc-ccceeeeCCCCcEEEEec-CCeEEEEchHHh--hhhcceec-CCCceEEEecCC-CeEEE
Confidence 4677777763222211100 0112334553 333333 789999999998 66666653 345666677643 45555
Q ss_pred EeCCCcEEEEECCCCc--eEEEEeccc--CccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEE
Q 001349 873 GSLDKTARVWSIGNEE--IHCVQVHDI--KDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKV 948 (1094)
Q Consensus 873 gs~DgtI~vWdi~~~~--~~~~~~~~~--~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l 948 (1094)
.+. ..|+-|++.+.. .+.+..+.. ...|.+ ...+++.+++++.+ +.-.++.+
T Consensus 122 VT~-taVyHWsi~~~s~P~kvFdR~~~L~~~QIIn-------Y~~d~~~kW~~l~G----------------I~~~~~~v 177 (494)
T 1bpo_A 122 VTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIIN-------YRTDAKQKWLLLTG----------------ISAQQNRV 177 (494)
T ss_dssp ECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEE-------EEECTTSSEEEEEE----------------EEEETTEE
T ss_pred EcC-CeeEEecccCCCCchhheecchhcccceEEE-------EEECCCCCeEEEEe----------------ecccCCcc
Confidence 544 579999997632 222222211 111211 22466666655432 22223322
Q ss_pred EEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC---ccEEEEEE--CCCCEEEEEECCCC---e-----
Q 001349 949 YCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG---LVYTASTS--LDGAAVKMWSTSNY---N----- 1015 (1094)
Q Consensus 949 ~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~---~~~las~s--~Dg~~I~iwd~~~~---~----- 1015 (1094)
.|.+++|..+.+.. +.+.||......+....+ ..+++.+. ..|+.++|-++... .
T Consensus 178 -----~G~mQLYS~er~~s-------Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~k 245 (494)
T 1bpo_A 178 -----VGAMQLYSVDRKVS-------QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK 245 (494)
T ss_dssp -----EEEEEEEESTTCCE-------EEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCC
T ss_pred -----cceEEEeecccccc-------chheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccc
Confidence 47899999887765 345666554444444321 11222222 23458999998542 1
Q ss_pred EEEE--ec---CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcE
Q 001349 1016 MVGS--LP---TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRI 1088 (1094)
Q Consensus 1016 ~~~~--~~---~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I 1088 (1094)
.... ++ ..+...++.+++. .++.-+.-|.|++||+.++.++..-. -....|..-+.+.+..-++..+..|.|
T Consensus 246 k~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nr-Is~~~iF~t~~~~~~~Gi~~Vnr~GqV 324 (494)
T 1bpo_A 246 KAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR-ISGETIFVTAPHEATAGIIGVNRKGQV 324 (494)
T ss_dssp EEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEEETTTTEEEEEETTCEE
T ss_pred eeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeec-ccCCceEEecccCCCCcEEEEccCceE
Confidence 1111 11 2456778999987 78889999999999999999988763 344566666665555556666677766
Q ss_pred EE
Q 001349 1089 QA 1090 (1094)
Q Consensus 1089 ~i 1090 (1094)
.-
T Consensus 325 l~ 326 (494)
T 1bpo_A 325 LS 326 (494)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.97 Score=50.11 Aligned_cols=198 Identities=10% Similarity=0.193 Sum_probs=115.4
Q ss_pred EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecC----CC---EEEEEeC---CCcEEEEECC--CCceEEE
Q 001349 825 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS----GE---MLYSGSL---DKTARVWSIG--NEEIHCV 892 (1094)
Q Consensus 825 ~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspd----g~---~LaSgs~---DgtI~vWdi~--~~~~~~~ 892 (1094)
+++.....+-+.+||+ +| +.++.+.. +.++.+..-|+ |+ ++++... +++|.+|+++ ++++..+
T Consensus 42 ~ii~t~k~~gL~Vydl-~G--~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i 116 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DG--KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM 116 (355)
T ss_dssp EEEEEETTTEEEEEET-TS--CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred EEEEEcCCCCEEEEcC-CC--cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence 7777778899999999 55 56777653 67888887763 22 2333333 5789999774 4332222
Q ss_pred EecccCccceeeeecCceEEE--eeC-CCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECC---CCc
Q 001349 893 QVHDIKDQIQNLAVSNSILCF--IPQ-GAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA---TGT 966 (1094)
Q Consensus 893 ~~~~~~~~V~~v~~~~~~~~f--spd-g~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~---~~~ 966 (1094)
... ..++..-...+..+|+ +|. ++. ++++...+|.+..|++. .+.
T Consensus 117 ~~~--~~pv~t~~~~pyGlcly~~~~~g~~---------------------------yafV~~k~G~~~q~~l~~~~~g~ 167 (355)
T 3amr_A 117 TDP--DHPIATAINEVYGFTLYHSQKTGKY---------------------------YAMVTGKEGEFEQYELKADKNGY 167 (355)
T ss_dssp SCT--TSCEECCCSSCCCEEEEECTTTCCE---------------------------EEEEECSSSEEEEEEEEECTTSC
T ss_pred ccc--ccCcCCCCCCeeEEEEEecCCCCcE---------------------------EEEEECCCCeEEEEEEEeCCCCc
Confidence 110 0011000011222223 332 221 36666777888888773 332
Q ss_pred eeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECC-----CCeEEEEecCC---CCEEEEEEe--CC--
Q 001349 967 FATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS-----NYNMVGSLPTL---SEVRAMVVS--SE-- 1034 (1094)
Q Consensus 967 ~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~-----~~~~~~~~~~~---~~v~~l~~s--pd-- 1034 (1094)
...... +++.- ...+..+.+++....+..+-.+. -|..+|.. +++.+..+... ..+..|++- ++
T Consensus 168 ~~~~lV--R~f~l-gsq~EgcvvDd~~g~Lyv~eEd~-GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~ 243 (355)
T 3amr_A 168 ISGKKV--RAFKM-NSQTEGMAADDEYGRLYIAEEDE-AIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGK 243 (355)
T ss_dssp EEEEEE--EEEEC-SSCEEEEEEETTTTEEEEEETTT-EEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGC
T ss_pred ccceEE--EEecC-CCCcceEEEcCCCCeEEEecccc-eEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCC
Confidence 221111 22222 24677888888777777777664 56666654 35566665432 468888884 32
Q ss_pred -EEEEEE-cCCeEEEEECC-CCcEEEEec
Q 001349 1035 -LVYLGC-KGGTVEIWDQK-RQIRIETLQ 1060 (1094)
Q Consensus 1035 -~l~sgs-~dg~I~vwd~~-t~~~~~~l~ 1060 (1094)
++++++ .+++..|||.. +.+.+..|.
T Consensus 244 gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 244 GYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 677666 57899999997 677777774
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.47 E-value=1.6 Score=54.36 Aligned_cols=215 Identities=11% Similarity=0.019 Sum_probs=113.3
Q ss_pred CCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCce----EEEEecccCccceeeee
Q 001349 832 DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE-MLYSGSLDKTARVWSIGNEEI----HCVQVHDIKDQIQNLAV 906 (1094)
Q Consensus 832 Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~-~LaSgs~DgtI~vWdi~~~~~----~~~~~~~~~~~V~~v~~ 906 (1094)
...|+..++.... ....+ .....+..|+|++.+. ++++-...+.|+.+++..... ..+... ....
T Consensus 403 ~~~Ir~i~l~~~~--~~~l~-~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~-~l~~------ 472 (791)
T 3m0c_C 403 RHEVRKMTLDRSE--YTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-DIQA------ 472 (791)
T ss_dssp BSSEEEECTTSCC--CEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS-SCSC------
T ss_pred ccceeEeeccCCc--ceeee-cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEec-CCCC------
Confidence 4567888887663 22223 3456678999998544 445555567888888875310 111000 0011
Q ss_pred cCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEE-EEEcCCeEEEEECCCCceeEEeccceeecCCCCCeE
Q 001349 907 SNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVY-CGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVH 985 (1094)
Q Consensus 907 ~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~-sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~ 985 (1094)
+..+++.+.+. .|+ +-...+.|.+.++........ +........
T Consensus 473 -P~GLAvD~~~~----------------------------~LY~tD~~~~~I~v~~ldG~~~~~l------~~~~l~~P~ 517 (791)
T 3m0c_C 473 -PDGLAVDWIHS----------------------------NIYWTDSVLGTVSVADTKGVKRKTL------FRENGSKPR 517 (791)
T ss_dssp -CCEEEEETTTT----------------------------EEEEEETTTTEEEEEETTSSSEEEE------EECTTCCEE
T ss_pred -cceeeeeecCC----------------------------cEEEEecCCCeEEEEeCCCCeEEEE------EeCCCCCcc
Confidence 11222333332 333 334457788888765443221 112234578
Q ss_pred EEEEeCCccEEEEEEC-CCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEE-cCCeEEEEECCCCcEEEEec
Q 001349 986 ALQVHNGLVYTASTSL-DGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQKRQIRIETLQ 1060 (1094)
Q Consensus 986 sl~fs~~~~~las~s~-Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs-~dg~I~vwd~~t~~~~~~l~ 1060 (1094)
.|++++...++..+.. ....|...++........+. .-.....|++++. .|+.+. ..+.|..+++........+.
T Consensus 518 gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~ 597 (791)
T 3m0c_C 518 AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE 597 (791)
T ss_dssp EEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE
T ss_pred eEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEec
Confidence 9999986433333322 21478888886544333333 3367899999965 566554 56789999987554433332
Q ss_pred c-cCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1061 T-GTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1061 ~-~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
. +.-....+|++.. +.++++-...+.|...+
T Consensus 598 ~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~d 629 (791)
T 3m0c_C 598 DEKRLAHPFSLAVFE-DKVFWTDIINEAIFSAN 629 (791)
T ss_dssp CTTTTSSEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred CCCccCCCCEEEEeC-CEEEEEECCCCEEEEEe
Confidence 1 1122345666642 23334444456666554
|
| >1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0031 Score=50.99 Aligned_cols=48 Identities=19% Similarity=0.325 Sum_probs=39.3
Q ss_pred ceeccCccccccCcEEcCCcc-----cccHHhHHHHHHh-CCCCCCCCCcCCCC
Q 001349 163 DFVCPITTHIFDDPVTLETGQ-----TYERRAIQEWIER-GNSSCPITRQKLSS 210 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~~cGh-----tfc~~ci~~~~~~-~~~~CP~c~~~~~~ 210 (1094)
+-.|.||++-..+|.+.||.+ -|=+.|+.+|+.. ++..||+|+..+..
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 568999999888888888653 6778899999985 46679999988753
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.088 Score=61.00 Aligned_cols=149 Identities=11% Similarity=0.058 Sum_probs=92.5
Q ss_pred CceEEEEeC---CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCC----EEEEE
Q 001349 937 YPKCLALVQ---GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGA----AVKMW 1009 (1094)
Q Consensus 937 ~v~~l~~s~---~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~----~I~iw 1009 (1094)
....+++++ +.|+++...+.|+.+|+.++...... ........++|++++.++..+...++ .+..+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-------~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~ 210 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-------SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYIL 210 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-------CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-------cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEE
Confidence 456677763 45777777688999999877654321 23356889999999884444443211 33334
Q ss_pred ECCCCeEE--EEecCCCCEEEEEEeC-C-EEEEE-EcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEE-EEe
Q 001349 1010 STSNYNMV--GSLPTLSEVRAMVVSS-E-LVYLG-CKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLV-IGT 1083 (1094)
Q Consensus 1010 d~~~~~~~--~~~~~~~~v~~l~~sp-d-~l~sg-s~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~-sgs 1083 (1094)
+. .+... ..+........++++| + .++.+ ..++.|+.|+..++........+.......++|+|+|++|+ +-.
T Consensus 211 ~~-~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~ 289 (430)
T 3tc9_A 211 TR-ESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV 289 (430)
T ss_dssp EG-GGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred eC-CCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC
Confidence 43 22211 2233334456788998 4 45544 46789999999877643333222234578999999999555 445
Q ss_pred CCCcEEEEeC
Q 001349 1084 SDGRIQAWGL 1093 (1094)
Q Consensus 1084 ~DG~I~iWdl 1093 (1094)
..+.|..|+.
T Consensus 290 ~~~~I~~~~~ 299 (430)
T 3tc9_A 290 NQHYILRSDY 299 (430)
T ss_dssp TTTEEEEEEE
T ss_pred CCCEEEEEeC
Confidence 5678888763
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.012 Score=73.00 Aligned_cols=227 Identities=9% Similarity=-0.046 Sum_probs=117.0
Q ss_pred CCCeEEEeCCcc-eeecccCCCcEEEEEEeCC--EEEEE-ECCCeEEEEecCCCc--ceeEEEecccCCCeEEEEEecC-
Q 001349 794 DSSADFWNHREL-VHVDSSENGKVLSIACFRD--KIFSG-HSDGTIKVWTGRGSI--LHLIQQIREHTKAVTGLAILQS- 866 (1094)
Q Consensus 794 dg~I~vWd~~~~-~~~~~~h~~~V~~l~fspd--~LaSg-s~Dg~I~vWd~~t~~--~~~~~~l~~H~~~V~sv~fspd- 866 (1094)
.+.|++.+.... ...+......+..++|.+. .|+.+ ...+.|+.+++.+.. ......+.........|++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~ 464 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 464 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSS
T ss_pred ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeC
Confidence 356666666532 1122222345678899873 44444 456889999987510 0111112112223456788754
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCC
Q 001349 867 GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQG 946 (1094)
Q Consensus 867 g~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~ 946 (1094)
++++++-...+.|.+++..+.....+.... ... +..+++.|.+..|.+..+.
T Consensus 465 g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~-~~~-------P~giavDp~~g~ly~td~~-------------------- 516 (699)
T 1n7d_A 465 SNIYWTDSVLGTVSVADTKGVKRKTLFREQ-GSK-------PRAIVVDPVHGFMYWTDWG-------------------- 516 (699)
T ss_dssp SBCEECCTTTSCEEEEBSSSCCEEEECCCS-SCC-------CCCEECCSSSSCCEECCCS--------------------
T ss_pred CcEEEEeccCCeEEEEecCCCceEEEEeCC-CCC-------cceEEEccCCCcEEEcccC--------------------
Confidence 455555556788999998765432221111 111 2233355544432221110
Q ss_pred EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec---CC
Q 001349 947 KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---TL 1023 (1094)
Q Consensus 947 ~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~---~~ 1023 (1094)
..+.|..+++......... ...-...+.|+|++++..+..+....+.|..+|+........+. ..
T Consensus 517 ------~~~~I~~~~~dG~~~~~l~------~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~ 584 (699)
T 1n7d_A 517 ------TPAKIKKGGLNGVDIYSLV------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRL 584 (699)
T ss_dssp ------SSCCEEBCCSSSCCCCEES------CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSC
T ss_pred ------CCCeEEEEeCCCCCeeEEE------eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcC
Confidence 1145555555422211110 01123456799987544333333334589999986433222222 12
Q ss_pred CCEEEEEEeCCEEEE-EEcCCeEEEEECCCCcEEEEec
Q 001349 1024 SEVRAMVVSSELVYL-GCKGGTVEIWDQKRQIRIETLQ 1060 (1094)
Q Consensus 1024 ~~v~~l~~spd~l~s-gs~dg~I~vwd~~t~~~~~~l~ 1060 (1094)
....+|++..+.++. ....+.|..+|..+|+.+..+.
T Consensus 585 ~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 585 AHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp SSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred CCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEee
Confidence 345577778885554 4566899999999888877774
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.07 Score=57.60 Aligned_cols=222 Identities=10% Similarity=0.013 Sum_probs=139.5
Q ss_pred HhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCChHHHHHh
Q 001349 315 INGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTLIEM 390 (1094)
Q Consensus 315 ~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~~~~~~~ 390 (1094)
++.++..| .+.+..++..|+..|.++.. +..++.|+.+|+.. ...|+..|..+...+..+..
T Consensus 25 i~~L~~~L-~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~- 90 (280)
T 1oyz_A 25 DDELFRLL-DDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN- 90 (280)
T ss_dssp HHHHHHHT-TCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH-
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchH-
Confidence 44455555 45788999999999998841 23568888999876 56788888888754432211
Q ss_pred hhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHH
Q 001349 391 DMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILL 470 (1094)
Q Consensus 391 ~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~ 470 (1094)
.++.|...+.+.. +. .-+.+++..|..+-... .......++.|+..+...+...|..|+..|.
T Consensus 91 -l~~~L~~~~~~d~-~~-----~vr~~a~~aL~~l~~~~----------~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~ 153 (280)
T 1oyz_A 91 -VFNILNNMALNDK-SA-----CVRATAIESTAQRCKKN----------PIYSPKIVEQSQITAFDKSTNVRRATAFAIS 153 (280)
T ss_dssp -HHHHHHHHHHHCS-CH-----HHHHHHHHHHHHHHHHC----------GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCC-CH-----HHHHHHHHHHHHHhccC----------CcccHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 1123322222211 11 11455555565541100 1123467899999999999999998888776
Q ss_pred HHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcC
Q 001349 471 RCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTAN 550 (1094)
Q Consensus 471 ~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~ 550 (1094)
..- +...+++|+.++...+...|..++..|..+-.. .-.....|+..|+...
T Consensus 154 ~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----------------~~~~~~~L~~~l~d~~ 205 (280)
T 1oyz_A 154 VIN-----------DKATIPLLINLLKDPNGDVRNWAAFAININKYD-----------------NSDIRDCFVEMLQDKN 205 (280)
T ss_dssp TC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC-----------------CHHHHHHHHHHTTCSC
T ss_pred hcC-----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC-----------------cHHHHHHHHHHhcCCC
Confidence 331 234678889888877777788787777655111 1122334555665555
Q ss_pred CccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhccc
Q 001349 551 HDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 609 (1094)
Q Consensus 551 ~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~g 609 (1094)
++-+-.++..|.++. -+++++.|+..|.+.+ ++..|+.+|..++.
T Consensus 206 ~~vR~~A~~aL~~~~-----------~~~~~~~L~~~l~d~~---vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 206 EEVRIEAIIGLSYRK-----------DKRVLSVLCDELKKNT---VYDDIIEAAGELGD 250 (280)
T ss_dssp HHHHHHHHHHHHHTT-----------CGGGHHHHHHHHTSSS---CCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhC-----------CHhhHHHHHHHhcCcc---HHHHHHHHHHhcCc
Confidence 555666777777664 2468899999998754 67788999988865
|
| >3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.00065 Score=73.39 Aligned_cols=47 Identities=23% Similarity=0.443 Sum_probs=37.9
Q ss_pred ceeccCccccccC----cEE----cCCcccccHHhHHHHHHhCC----------CCCCCCCcCCC
Q 001349 163 DFVCPITTHIFDD----PVT----LETGQTYERRAIQEWIERGN----------SSCPITRQKLS 209 (1094)
Q Consensus 163 ~~~CpIc~~~~~d----Pv~----~~cGhtfc~~ci~~~~~~~~----------~~CP~c~~~~~ 209 (1094)
...|+||...+.+ |-. ..|||.|-..||.+|++... ..||.|+++++
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 5679999999987 422 37999999999999997521 35999999875
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=96.27 E-value=0.023 Score=67.60 Aligned_cols=141 Identities=18% Similarity=0.152 Sum_probs=97.1
Q ss_pred hHHHHHHHHhcCCChHHHHHhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccc--------------
Q 001349 370 LLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVS-------------- 435 (1094)
Q Consensus 370 ~~~Aa~~l~~L~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~-------------- 435 (1094)
+-.|...|..++.....-+.-..+|+|+.+|++..+|. +-..++|+-|+..+......
T Consensus 39 RR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~--------e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~ 110 (651)
T 3grl_A 39 RRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDS--------EIIGYALDTLYNIISNDEEEEVEENSTRQSEDLG 110 (651)
T ss_dssp HHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCH--------HHHHHHHHHHHHHHCCC--------------CHH
T ss_pred HHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccH--------HHHHHHHHHHHHHhCCCCcccccccccccchHHH
Confidence 34455566666554444444445688888888765442 23333444443222111110
Q ss_pred -cch-hhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCc-chhhHhhh-cCchhHHHHHHhcCCchhHHHHHHH
Q 001349 436 -SIA-NTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGK-CRNSIADK-AELAPVMESFMAASDGERFEIVCFL 511 (1094)
Q Consensus 436 -~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~-~r~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~l 511 (1094)
.++ .-+-+.++|+.|+++|+..+...|..++-+|..++..... ..+.|... ++++.|+++|....+.-|..++.+|
T Consensus 111 ~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL 190 (651)
T 3grl_A 111 SQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLL 190 (651)
T ss_dssp HHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHH
Confidence 011 1234678899999999999999999999999888877766 88888865 8999999999888778888899999
Q ss_pred HHHHhcc
Q 001349 512 SELVKLN 518 (1094)
Q Consensus 512 ~el~~~~ 518 (1094)
.+|...+
T Consensus 191 ~~Lt~~n 197 (651)
T 3grl_A 191 QALTRSN 197 (651)
T ss_dssp HHHHTTC
T ss_pred HHHhcCC
Confidence 9998874
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=2.3 Score=51.48 Aligned_cols=216 Identities=10% Similarity=0.024 Sum_probs=121.3
Q ss_pred CCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEE-EEeCCCcEEEEECCCCceEEEEecccCccceeeeecCc
Q 001349 831 SDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLY-SGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNS 909 (1094)
Q Consensus 831 ~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~La-Sgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~ 909 (1094)
..+.|+..|+.+........+ ..-..+..|+|++.+..|+ +-..++.|..++++......+..... .. +.
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~-~~-------P~ 83 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPL-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGL-DY-------PE 83 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCC-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC-SC-------CC
T ss_pred eCCcEEEEECCCCCcceEEEc-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCC-CC-------cc
Confidence 567899999987632222222 2335678999999655554 55567888888887653322221110 11 12
Q ss_pred eEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEE-EEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEE
Q 001349 910 ILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYC-GCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQ 988 (1094)
Q Consensus 910 ~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~s-gs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~ 988 (1094)
.+++.+.+. .|+. -...+.|.+.++......... ...-.....++
T Consensus 84 GlAvD~~~~----------------------------~LY~tD~~~~~I~v~~~dG~~~~~l~------~~~l~~P~~ia 129 (628)
T 4a0p_A 84 GMAVDWLGK----------------------------NLYWADTGTNRIEVSKLDGQHRQVLV------WKDLDSPRALA 129 (628)
T ss_dssp EEEEETTTT----------------------------EEEEEETTTTEEEEEETTSTTCEEEE------CSSCCCEEEEE
T ss_pred eEEEEeCCC----------------------------EEEEEECCCCEEEEEecCCCcEEEEE------eCCCCCcccEE
Confidence 222433333 3333 233567777777644322111 12224568999
Q ss_pred EeCC-ccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEE-EcCCeEEEEECCCCcEEEEecccCC
Q 001349 989 VHNG-LVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLG-CKGGTVEIWDQKRQIRIETLQTGTS 1064 (1094)
Q Consensus 989 fs~~-~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sg-s~dg~I~vwd~~t~~~~~~l~~~h~ 1064 (1094)
++|. +.+..+-..+...|...++........+..-.....++++++ .|+.+ ...+.|..+|+..... ..+. ...
T Consensus 130 vdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~-~~l 207 (628)
T 4a0p_A 130 LDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIA-DDL 207 (628)
T ss_dssp EETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE-ECC
T ss_pred EccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEee-ccC
Confidence 9974 444444322124788888765443333445677899999985 55555 4568899999876543 3332 233
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1065 GKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1065 ~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
....++++.. +.+.++-...+.|...|
T Consensus 208 ~~P~glav~~-~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 208 PHPFGLTQYQ-DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp SCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred CCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence 3456787764 44444444567777665
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.44 Score=51.66 Aligned_cols=227 Identities=12% Similarity=0.135 Sum_probs=111.1
Q ss_pred cCcEEEEee-CC-----CCeEEEeCCcceee----cccCCCcEEEEEEeCCEEEEEECC-----CeEEEEecCCCc---c
Q 001349 784 EMVKVLSNG-HD-----SSADFWNHRELVHV----DSSENGKVLSIACFRDKIFSGHSD-----GTIKVWTGRGSI---L 845 (1094)
Q Consensus 784 d~~~l~s~s-~d-----g~I~vWd~~~~~~~----~~~h~~~V~~l~fspd~LaSgs~D-----g~I~vWd~~t~~---~ 845 (1094)
++..++.|| .+ ..+.+||..+.... .........++.+...+++.|+.+ ..+.+||..++. +
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W 93 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVW 93 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCee
Confidence 455667777 33 36777777632211 111112222333333366667654 468999999886 6
Q ss_pred eeEEEecccCCCeEEEEEecCCCEEEEEeCC-----CcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeE
Q 001349 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLD-----KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGI 920 (1094)
Q Consensus 846 ~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D-----gtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l 920 (1094)
..+..+......-..+.+ ++.+++.|+.+ ..+.+||..+++...+........-.++ ...+++.
T Consensus 94 ~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~--------~~~~~~i- 162 (301)
T 2vpj_A 94 YSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGL--------VVASGVI- 162 (301)
T ss_dssp EEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEE--------EEETTEE-
T ss_pred EECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceE--------EEECCEE-
Confidence 655444322222222222 67777777654 3578888888765444322111100000 1112222
Q ss_pred EEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEc-----CCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccE
Q 001349 921 KVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQ-----DGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVY 995 (1094)
Q Consensus 921 ~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~-----Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~ 995 (1094)
++.|+. -..+..||+.+++........... .-.++....+..+
T Consensus 163 ---------------------------yv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-----~~~~~~~~~~~i~ 210 (301)
T 2vpj_A 163 ---------------------------YCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKR-----SGAGVALLNDHIY 210 (301)
T ss_dssp ---------------------------EEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCC-----BSCEEEEETTEEE
T ss_pred ---------------------------EEECCCCCCcccceEEEEeCCCCcEEeCCCCCccc-----ccceEEEECCEEE
Confidence 222332 246889999888765432111111 1123333444444
Q ss_pred EEEEECCC----CEEEEEECCCCeEEE--EecCCCCEEEEEEeCC-EEEEEEcC-----CeEEEEECCCCc
Q 001349 996 TASTSLDG----AAVKMWSTSNYNMVG--SLPTLSEVRAMVVSSE-LVYLGCKG-----GTVEIWDQKRQI 1054 (1094)
Q Consensus 996 las~s~Dg----~~I~iwd~~~~~~~~--~~~~~~~v~~l~~spd-~l~sgs~d-----g~I~vwd~~t~~ 1054 (1094)
+ .|+.++ ..+.+||+.+.+-.. .+.....-.+++...+ .++.|+.+ +.|.+||+.+.+
T Consensus 211 v-~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 211 V-VGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp E-ECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred E-EeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 4 443332 368999998765322 2222211122333344 55556544 468889987754
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.33 Score=53.38 Aligned_cols=159 Identities=12% Similarity=0.052 Sum_probs=102.9
Q ss_pred CCCceEEEEeC--CEEEEEE-cCCeEEEEECCCCceeEEeccceeecCC-CCCeEEEEE---eCCccEEEEEEC------
Q 001349 935 SKYPKCLALVQ--GKVYCGC-QDGAIQEIDLATGTFATIQTGHRKLLGK-ANPVHALQV---HNGLVYTASTSL------ 1001 (1094)
Q Consensus 935 ~~~v~~l~~s~--~~l~sgs-~Dg~I~iwDl~~~~~~~~~~~~~~~~~h-~~~V~sl~f---s~~~~~las~s~------ 1001 (1094)
.-+..+..|++ +.++.++ ..++|..||...+.............+. ...+..+.+ .+++.+++....
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 34556677764 6777777 6899999999866544321100000011 113578999 677777775431
Q ss_pred -------CCCEEEEEECC---CCeEEEEecC-------------C-CCEEEEEEeCC--EEEEEEcC-CeEEEEECCCCc
Q 001349 1002 -------DGAAVKMWSTS---NYNMVGSLPT-------------L-SEVRAMVVSSE--LVYLGCKG-GTVEIWDQKRQI 1054 (1094)
Q Consensus 1002 -------Dg~~I~iwd~~---~~~~~~~~~~-------------~-~~v~~l~~spd--~l~sgs~d-g~I~vwd~~t~~ 1054 (1094)
+ +.|..||+. +++.+....- . .....+++.++ ..++++.. +.|..++.....
T Consensus 92 ~g~~~~g~-~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~ 170 (334)
T 2p9w_A 92 ADQSSHGA-SSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT 170 (334)
T ss_dssp TSCCSSSC-CEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC
T ss_pred cccccCCC-CEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE
Confidence 3 489999999 7877665541 1 24788999887 55567777 888877776443
Q ss_pred EEEEe-cc---cCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1055 RIETL-QT---GTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1055 ~~~~l-~~---~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
....+ .. ......+.|+++|||+.|++...+|.+..+|+.
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 22111 11 111236799999999999988779999998863
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.53 Score=51.06 Aligned_cols=228 Identities=13% Similarity=0.179 Sum_probs=109.8
Q ss_pred ccCcEEEEeeCC----CCeEEEeCCcceee----cccCCCcEEEEEEeCCEEEEEECC-----CeEEEEecCCCcceeEE
Q 001349 783 FEMVKVLSNGHD----SSADFWNHRELVHV----DSSENGKVLSIACFRDKIFSGHSD-----GTIKVWTGRGSILHLIQ 849 (1094)
Q Consensus 783 ~d~~~l~s~s~d----g~I~vWd~~~~~~~----~~~h~~~V~~l~fspd~LaSgs~D-----g~I~vWd~~t~~~~~~~ 849 (1094)
.++..++.||.+ ..+..||..+.... .......-..+.+...+++.|+.+ ..+.+||..++.+..+.
T Consensus 14 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 14 LPKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp -CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CCCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 345566677754 35667776632111 111111112233333366666654 35889999988666554
Q ss_pred EecccCCCeEEEEEecCCCEEEEEeCCC-----cEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEE
Q 001349 850 QIREHTKAVTGLAILQSGEMLYSGSLDK-----TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHL 924 (1094)
Q Consensus 850 ~l~~H~~~V~sv~fspdg~~LaSgs~Dg-----tI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~ 924 (1094)
.+......-..+.+ ++.+++.|+.++ .+.+||..+++...+........-.++ ...+++.
T Consensus 94 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~--------~~~~~~i----- 158 (302)
T 2xn4_A 94 NMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGV--------GVVGGLL----- 158 (302)
T ss_dssp CCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEE--------EEETTEE-----
T ss_pred CCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceE--------EEECCEE-----
Confidence 44322222222222 677777777653 467788887754443222111000000 1112221
Q ss_pred eCCeEEEEcCCCCceEEEEeCCEEEEEEc-------CCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEE
Q 001349 925 RNGKTKLLNSSKYPKCLALVQGKVYCGCQ-------DGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTA 997 (1094)
Q Consensus 925 ~~g~i~l~~~~~~v~~l~~s~~~l~sgs~-------Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~la 997 (1094)
++.|+. -..+..||+.+++............+ .++....+..+++
T Consensus 159 -----------------------yv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-----~~~~~~~~~iyv~ 210 (302)
T 2xn4_A 159 -----------------------YAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSG-----AGVGVLNNLLYAV 210 (302)
T ss_dssp -----------------------EEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBS-----CEEEEETTEEEEE
T ss_pred -----------------------EEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcccccc-----ccEEEECCEEEEE
Confidence 222221 24588999988876543211111111 2333445554544
Q ss_pred EEECCC----CEEEEEECCCCeEEE--EecCCCCEEEEEEeCC-EEEEEEcC-----CeEEEEECCCCc
Q 001349 998 STSLDG----AAVKMWSTSNYNMVG--SLPTLSEVRAMVVSSE-LVYLGCKG-----GTVEIWDQKRQI 1054 (1094)
Q Consensus 998 s~s~Dg----~~I~iwd~~~~~~~~--~~~~~~~v~~l~~spd-~l~sgs~d-----g~I~vwd~~t~~ 1054 (1094)
|+.++ ..+.+||..+.+-.. .+.....-.+++...+ .++.|+.+ ..+.+||+.+.+
T Consensus 211 -GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 211 -GGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp -CCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred -CCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 43332 368999998764322 2222111122333344 55566544 358999988764
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.13 Score=52.35 Aligned_cols=146 Identities=21% Similarity=0.257 Sum_probs=100.8
Q ss_pred HhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCChHHHHHh
Q 001349 315 INGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTLIEM 390 (1094)
Q Consensus 315 ~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~~~~~~~ 390 (1094)
...+++.| .+.+..+...|+..|..+.. ...++.|+.+|+.+ ...|+.+|..+...
T Consensus 16 ~~~~i~~L-~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~------- 75 (201)
T 3ltj_A 16 VEMYIKNL-QDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE------- 75 (201)
T ss_dssp HHHHHHHT-TCSCHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-------
T ss_pred hHHHHHHh-cCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-------
Confidence 44455555 55789999999999998732 24678899999776 55677777766432
Q ss_pred hhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHH
Q 001349 391 DMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILL 470 (1094)
Q Consensus 391 ~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~ 470 (1094)
+.++.|+..|...+.. -+.+|+..|..+ .....++.|+..+...+...|..|+..|.
T Consensus 76 ~~~~~L~~~l~d~~~~-------vr~~a~~aL~~~----------------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~ 132 (201)
T 3ltj_A 76 RAVEPLIKALKDEDGW-------VRQSAAVALGQI----------------GDERAVEPLIKALKDEDWFVRIAAAFALG 132 (201)
T ss_dssp GGHHHHHHHTTCSSHH-------HHHHHHHHHHHH----------------CCGGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHH-------HHHHHHHHHHHh----------------CcHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3458888877653211 145555555543 33568899999999999999999888776
Q ss_pred HHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHH
Q 001349 471 RCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSEL 514 (1094)
Q Consensus 471 ~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el 514 (1094)
.. .+...++.|++++...+...|..|+..|..+
T Consensus 133 ~~-----------~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 133 EI-----------GDERAVEPLIKALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp HH-----------TCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred Hh-----------CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 54 1234567788888776667777777777665
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.16 E-value=1.1 Score=48.62 Aligned_cols=236 Identities=11% Similarity=0.069 Sum_probs=112.2
Q ss_pred CcEEEEeeCC--CCeEEEeCCcceee----cccCCCcEEEEEEeCCEEEEEECC----CeEEEEecCCCcceeEEEeccc
Q 001349 785 MVKVLSNGHD--SSADFWNHRELVHV----DSSENGKVLSIACFRDKIFSGHSD----GTIKVWTGRGSILHLIQQIREH 854 (1094)
Q Consensus 785 ~~~l~s~s~d--g~I~vWd~~~~~~~----~~~h~~~V~~l~fspd~LaSgs~D----g~I~vWd~~t~~~~~~~~l~~H 854 (1094)
+..++.||.+ ..+.+||..+.... .......-.++.+...+++.|+.+ ..+.+||..++.+..+..+...
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 3455666654 56777777632211 111112223333333366667654 6788999999876665544322
Q ss_pred CCCeEEEEEecCCCEEEEEeCC------CcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCe
Q 001349 855 TKAVTGLAILQSGEMLYSGSLD------KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 928 (1094)
Q Consensus 855 ~~~V~sv~fspdg~~LaSgs~D------gtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~ 928 (1094)
...-..+.+ ++.+++.|+.+ ..+.+||..+++...+........-.++ ...+++.++++..++.
T Consensus 92 r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~--------~~~~~~iyv~GG~~~~ 161 (306)
T 3ii7_A 92 RDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGM--------VEANGLIYVCGGSLGN 161 (306)
T ss_dssp CBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEE--------EEETTEEEEECCEESC
T ss_pred ccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEE--------EEECCEEEEECCCCCC
Confidence 222222222 67777777765 4588889888764443221111000000 1112221111110000
Q ss_pred EEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC---CE
Q 001349 929 TKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG---AA 1005 (1094)
Q Consensus 929 i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg---~~ 1005 (1094)
.. .+..-..+.+||+.+++.......... ..-.++....+..+++.|.... ..
T Consensus 162 -------~~------------~~~~~~~~~~yd~~~~~W~~~~~~p~~-----r~~~~~~~~~~~i~v~GG~~~~~~~~~ 217 (306)
T 3ii7_A 162 -------NV------------SGRVLNSCEVYDPATETWTELCPMIEA-----RKNHGLVFVKDKIFAVGGQNGLGGLDN 217 (306)
T ss_dssp -------TT------------TCEECCCEEEEETTTTEEEEECCCSSC-----CBSCEEEEETTEEEEECCEETTEEBCC
T ss_pred -------CC------------cccccceEEEeCCCCCeEEECCCccch-----hhcceEEEECCEEEEEeCCCCCCCCce
Confidence 00 000135688999988865533211111 1112333345555544432211 26
Q ss_pred EEEEECCCCeEE--EEecCC-CCEEEEEEeCCEEEEEEcC-----CeEEEEECCCCc
Q 001349 1006 VKMWSTSNYNMV--GSLPTL-SEVRAMVVSSELVYLGCKG-----GTVEIWDQKRQI 1054 (1094)
Q Consensus 1006 I~iwd~~~~~~~--~~~~~~-~~v~~l~~spd~l~sgs~d-----g~I~vwd~~t~~ 1054 (1094)
+.+||..+.+-. ..+... .....+.+....++.|+.+ +.+.+||+.+.+
T Consensus 218 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 218 VEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EEEEETTTTEEEECCCCSCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred EEEeeCCCCcEEECCCCCCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 889998875422 222221 2223333333366666643 578999988754
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.43 Score=51.72 Aligned_cols=214 Identities=12% Similarity=0.186 Sum_probs=104.5
Q ss_pred CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCC-----CcEEEEECCCCc---eEEEEecccCccceee
Q 001349 833 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD-----KTARVWSIGNEE---IHCVQVHDIKDQIQNL 904 (1094)
Q Consensus 833 g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D-----gtI~vWdi~~~~---~~~~~~~~~~~~V~~v 904 (1094)
..+.+||..++.+..+..+.........+ ..++.+++.|+.+ ..+.+||..+++ ...+........-.++
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~ 108 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASV--SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA 108 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEE--EECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence 46888999888655444332211111222 2366777777755 358888888865 4443221111000000
Q ss_pred eecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEc-----CCeEEEEECCCCceeEEeccceeecC
Q 001349 905 AVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQ-----DGAIQEIDLATGTFATIQTGHRKLLG 979 (1094)
Q Consensus 905 ~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~-----Dg~I~iwDl~~~~~~~~~~~~~~~~~ 979 (1094)
...+++. ++.|+. ...+.+||+.+++............+
T Consensus 109 --------~~~~~~l----------------------------yv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 152 (301)
T 2vpj_A 109 --------TTLGDMI----------------------------YVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREG 152 (301)
T ss_dssp --------EEETTEE----------------------------EEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBS
T ss_pred --------EEECCEE----------------------------EEEcccCCCcccceEEEEcCCCCeEEECCCCCCCccc
Confidence 1112221 222322 24688999988776543211111111
Q ss_pred CCCCeEEEEEeCCccEEEEEECCC----CEEEEEECCCCeEEEE--ecCCCCEEEEEEeCC-EEEEEEcC-----CeEEE
Q 001349 980 KANPVHALQVHNGLVYTASTSLDG----AAVKMWSTSNYNMVGS--LPTLSEVRAMVVSSE-LVYLGCKG-----GTVEI 1047 (1094)
Q Consensus 980 h~~~V~sl~fs~~~~~las~s~Dg----~~I~iwd~~~~~~~~~--~~~~~~v~~l~~spd-~l~sgs~d-----g~I~v 1047 (1094)
.++....+..+ +.|+.++ ..+.+||..+.+-... +.....-.+++...+ .++.|+.+ +.+.+
T Consensus 153 -----~~~~~~~~~iy-v~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~ 226 (301)
T 2vpj_A 153 -----AGLVVASGVIY-CLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEA 226 (301)
T ss_dssp -----CEEEEETTEEE-EECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEE
T ss_pred -----ceEEEECCEEE-EECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEE
Confidence 22333344444 4443332 3688999877643222 222222223333345 55556553 57999
Q ss_pred EECCCCcEEEEecccCCc--ceEEEEEcCCCCEEEEEeCCC-----cEEEEeC
Q 001349 1048 WDQKRQIRIETLQTGTSG--KVQCMALDDNEEFLVIGTSDG-----RIQAWGL 1093 (1094)
Q Consensus 1048 wd~~t~~~~~~l~~~h~~--~I~~l~~Spdg~~L~sgs~DG-----~I~iWdl 1093 (1094)
||+.+.+-.. +...... ....+. -++++++.|+.++ .|.+||+
T Consensus 227 yd~~~~~W~~-~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~ 276 (301)
T 2vpj_A 227 YNIRTDSWTT-VTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDP 276 (301)
T ss_dssp EETTTTEEEE-ECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEET
T ss_pred EeCCCCcEEE-CCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcC
Confidence 9998765322 2111111 112222 2677888887663 4677775
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.85 Score=49.40 Aligned_cols=224 Identities=12% Similarity=0.198 Sum_probs=108.7
Q ss_pred EEEEEECC----CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCC-----CcEEEEECCCCceEEEEec
Q 001349 825 KIFSGHSD----GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD-----KTARVWSIGNEEIHCVQVH 895 (1094)
Q Consensus 825 ~LaSgs~D----g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D-----gtI~vWdi~~~~~~~~~~~ 895 (1094)
+++.|+.+ ..+.+||..++.+..+..+...... .+++. -++.+++.|+.+ ..+.+||..+++...+...
T Consensus 18 i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~ 95 (302)
T 2xn4_A 18 MVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCR-AGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANM 95 (302)
T ss_dssp EEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCC
T ss_pred EEEECCCCCCCCCcEEEEcCcCCcEeEcccCCccccc-ceEEE-ECCEEEEEeCcCCCccccceEEECCCCCceeeCCCC
Confidence 45555543 4688899988865544333221111 12222 266777777754 3578888888764443322
Q ss_pred ccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcC-----CeEEEEECCCCceeEE
Q 001349 896 DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQD-----GAIQEIDLATGTFATI 970 (1094)
Q Consensus 896 ~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~D-----g~I~iwDl~~~~~~~~ 970 (1094)
.....-.++ ...+++. ++.|+.+ ..+.+||+.+++....
T Consensus 96 p~~r~~~~~--------~~~~~~i----------------------------yv~GG~~~~~~~~~~~~~d~~~~~W~~~ 139 (302)
T 2xn4_A 96 RDRRSTLGA--------AVLNGLL----------------------------YAVGGFDGSTGLSSVEAYNIKSNEWFHV 139 (302)
T ss_dssp SSCCBSCEE--------EEETTEE----------------------------EEEEEECSSCEEEEEEEEETTTTEEEEE
T ss_pred CccccceEE--------EEECCEE----------------------------EEEcCCCCCccCceEEEEeCCCCeEeec
Confidence 111100000 1112222 2333333 3578899988776543
Q ss_pred eccceeecCCCCCeEEEEEeCCccEEEEEECCC-----CEEEEEECCCCeEEE--EecCCCCEEEEEEeCC-EEEEEEcC
Q 001349 971 QTGHRKLLGKANPVHALQVHNGLVYTASTSLDG-----AAVKMWSTSNYNMVG--SLPTLSEVRAMVVSSE-LVYLGCKG 1042 (1094)
Q Consensus 971 ~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg-----~~I~iwd~~~~~~~~--~~~~~~~v~~l~~spd-~l~sgs~d 1042 (1094)
...... ..-.+++...+..+++.|.... ..+.+||..+.+-.. .+.....-.+++...+ .++.|+.+
T Consensus 140 ~~~p~~-----r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 214 (302)
T 2xn4_A 140 APMNTR-----RSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHD 214 (302)
T ss_dssp CCCSSC-----CBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBS
T ss_pred CCCCCc-----ccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCC
Confidence 211111 1112333445555555443211 258899988764322 2222211223333445 55556543
Q ss_pred -----CeEEEEECCCCcEEEEecccCCcce-EEEEEcCCCCEEEEEeCCC-----cEEEEeC
Q 001349 1043 -----GTVEIWDQKRQIRIETLQTGTSGKV-QCMALDDNEEFLVIGTSDG-----RIQAWGL 1093 (1094)
Q Consensus 1043 -----g~I~vwd~~t~~~~~~l~~~h~~~I-~~l~~Spdg~~L~sgs~DG-----~I~iWdl 1093 (1094)
+.+.+||+.+.+-.. +........ .+++ ..++++++.|+.++ .|.+||+
T Consensus 215 ~~~~~~~~~~yd~~~~~W~~-~~~~~~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~ 274 (302)
T 2xn4_A 215 GPLVRKSVEVYDPTTNAWRQ-VADMNMCRRNAGVC-AVNGLLYVVGGDDGSCNLASVEYYNP 274 (302)
T ss_dssp SSSBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEET
T ss_pred CCcccceEEEEeCCCCCEee-CCCCCCccccCeEE-EECCEEEEECCcCCCcccccEEEEcC
Confidence 479999998765322 211111111 1122 23677888888664 3778875
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=1.8 Score=52.34 Aligned_cols=226 Identities=9% Similarity=0.009 Sum_probs=120.1
Q ss_pred CCCCeEEEeCCcc---eeecccCCCcEEEEEEeCC--EEE-EEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecC
Q 001349 793 HDSSADFWNHREL---VHVDSSENGKVLSIACFRD--KIF-SGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS 866 (1094)
Q Consensus 793 ~dg~I~vWd~~~~---~~~~~~h~~~V~~l~fspd--~La-Sgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspd 866 (1094)
..+.|+..++... .......-+.+.+++|++. .|+ +-...+.|..++..+.. .....+...-.....+++.+.
T Consensus 16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~-~~~~v~~~~~~~P~GlAvD~~ 94 (619)
T 3s94_A 16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE-SVQNVVVSGLLSPDGLACDWL 94 (619)
T ss_dssp CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CEEEECSSCSCEEEEEEETT
T ss_pred ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCC-ceEEEEeCCCCCcCeEEEEec
Confidence 4566777777632 2223344566889999973 444 44557889999987652 112233333356889999985
Q ss_pred CC-EEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeC
Q 001349 867 GE-MLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQ 945 (1094)
Q Consensus 867 g~-~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~ 945 (1094)
+. +.++-...+.|.+.+.++.....+.... -. .|..+++.|.+..+.+..+.
T Consensus 95 ~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~-l~-------~P~~Iavdp~~g~ly~tD~g------------------- 147 (619)
T 3s94_A 95 GEKLYWTDSETNRIEVSNLDGSLRKVLFWQE-LD-------QPRAIALDPSSGFMYWTDWG------------------- 147 (619)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCEEEECSS-CS-------CCCCEEEETTTTEEEEEECS-------------------
T ss_pred CCEEEEEeCCCCEEEEEECCCCCEEEEEeCC-CC-------CCceEEEecCCCeEEEeccC-------------------
Confidence 55 4555556789999999875433332111 11 12333466655444333321
Q ss_pred CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCC
Q 001349 946 GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLS 1024 (1094)
Q Consensus 946 ~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~ 1024 (1094)
..+.|...++......... ...-...+.++++++...+..+......|..+|+.......... ...
T Consensus 148 -------~~~~I~r~~~dG~~~~~l~------~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~ 214 (619)
T 3s94_A 148 -------EVPKIERAGMDGSSRFIII------NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLP 214 (619)
T ss_dssp -------SSCEEEEEETTSCSCEEEE------CSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC--------
T ss_pred -------CCCEEEEEECCCCceEEEE------eCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCC
Confidence 1234444444322221111 11224568899987544444444444588888886543322222 222
Q ss_pred CEEEEEEeCCEEEEEE-cCCeEEEEECCCCcEEEEe
Q 001349 1025 EVRAMVVSSELVYLGC-KGGTVEIWDQKRQIRIETL 1059 (1094)
Q Consensus 1025 ~v~~l~~spd~l~sgs-~dg~I~vwd~~t~~~~~~l 1059 (1094)
...++++.++.++.+. .++.|...|..+++....+
T Consensus 215 ~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~~~~~i 250 (619)
T 3s94_A 215 HPFALTLFEDILYWTDWSTHSILACNKYTGEGLREI 250 (619)
T ss_dssp -CCCEEESSSEEEEECTTTCSEEEEESSSCCCCEEC
T ss_pred CceEEEEeCCEEEEecCCCCEEEEEECCCCcccEEE
Confidence 3457788888666554 5678999998877654443
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.14 Score=52.55 Aligned_cols=149 Identities=21% Similarity=0.253 Sum_probs=103.6
Q ss_pred hHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCChHHH
Q 001349 312 PAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTL 387 (1094)
Q Consensus 312 ~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~~~~ 387 (1094)
+..++.+++.|- +.+..+...++..|..+.. ...++.|+.+|+.. ...|+.+|..+..
T Consensus 18 ~~~~~~L~~~L~-~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQ-DDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----- 79 (211)
T ss_dssp GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----
T ss_pred HhHHHHHHHHHc-CCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----
Confidence 344555666654 6789999999999998732 24678899999876 5567777777653
Q ss_pred HHhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHH
Q 001349 388 IEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVG 467 (1094)
Q Consensus 388 ~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 467 (1094)
-+.++.|+..|...+.. -+.+|+..|..+ .....++.|++.++..+...|..|+.
T Consensus 80 --~~~~~~L~~~l~~~~~~-------vr~~a~~aL~~~----------------~~~~~~~~L~~~l~d~~~~vr~~a~~ 134 (211)
T 3ltm_A 80 --ERAVEPLIKALKDEDGW-------VRQSAAVALGQI----------------GDERAVEPLIKALKDEDWFVRIAAAF 134 (211)
T ss_dssp --GGGHHHHHHHTTCSSHH-------HHHHHHHHHHHH----------------CCGGGHHHHHHHTTCSSHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCCHH-------HHHHHHHHHHHh----------------CcHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 13448888887653211 145555555544 23568899999999999999999888
Q ss_pred HHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHH
Q 001349 468 ILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSEL 514 (1094)
Q Consensus 468 ~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el 514 (1094)
.|... .+...++.|+.++...+...|..++..|..+
T Consensus 135 aL~~~-----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 135 ALGEI-----------GDERAVEPLIKALKDEDGWVRQSAADALGEI 170 (211)
T ss_dssp HHHHH-----------CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHc-----------CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 87654 1234567788888766767777777777665
|
| >2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0023 Score=58.03 Aligned_cols=33 Identities=12% Similarity=0.259 Sum_probs=28.9
Q ss_pred CceeccCccc-cccCcEE--cCCcccccHHhHHHHH
Q 001349 162 KDFVCPITTH-IFDDPVT--LETGQTYERRAIQEWI 194 (1094)
Q Consensus 162 ~~~~CpIc~~-~~~dPv~--~~cGhtfc~~ci~~~~ 194 (1094)
+++.|+||.+ ++.+||. +.|||+||+.|++.+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 3789999996 5889999 8999999999999843
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.94 Score=49.16 Aligned_cols=223 Identities=13% Similarity=0.128 Sum_probs=110.5
Q ss_pred EEEEEEC--CCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCC----CcEEEEECCCCceEEEEecccC
Q 001349 825 KIFSGHS--DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD----KTARVWSIGNEEIHCVQVHDIK 898 (1094)
Q Consensus 825 ~LaSgs~--Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D----gtI~vWdi~~~~~~~~~~~~~~ 898 (1094)
+++.|+. ...+.+||..++.+..+..+......-..+. -++.+++.|+.+ ..+.+||..+++...+......
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 4555654 3678899999886655544332222222222 266777777755 5678888888764443322111
Q ss_pred ccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcC------CeEEEEECCCCceeEEec
Q 001349 899 DQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQD------GAIQEIDLATGTFATIQT 972 (1094)
Q Consensus 899 ~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~D------g~I~iwDl~~~~~~~~~~ 972 (1094)
..-..+ ...+++. ++.|+.+ ..+.+||+.+++....-.
T Consensus 92 r~~~~~--------~~~~~~i----------------------------yv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~ 135 (306)
T 3ii7_A 92 RDSLAA--------CAAEGKI----------------------------YTSGGSEVGNSALYLFECYDTRTESWHTKPS 135 (306)
T ss_dssp CBSCEE--------EEETTEE----------------------------EEECCBBTTBSCCCCEEEEETTTTEEEEECC
T ss_pred ccceeE--------EEECCEE----------------------------EEECCCCCCCcEeeeEEEEeCCCCceEeCCC
Confidence 000000 1112221 2333333 468899998887553321
Q ss_pred cceeecCCCCCeEEEEEeCCccEEEEEECC-------CCEEEEEECCCCeEEE--EecCCCCEEEEEEeCC-EEEEEEcC
Q 001349 973 GHRKLLGKANPVHALQVHNGLVYTASTSLD-------GAAVKMWSTSNYNMVG--SLPTLSEVRAMVVSSE-LVYLGCKG 1042 (1094)
Q Consensus 973 ~~~~~~~h~~~V~sl~fs~~~~~las~s~D-------g~~I~iwd~~~~~~~~--~~~~~~~v~~l~~spd-~l~sgs~d 1042 (1094)
....... .+++...+..+++.|... -..+.+||..+.+-.. .+.....-.+++...+ .++.|+.+
T Consensus 136 ~p~~r~~-----~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~ 210 (306)
T 3ii7_A 136 MLTQRCS-----HGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQN 210 (306)
T ss_dssp CSSCCBS-----CEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEE
T ss_pred CcCCcce-----eEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCC
Confidence 1111111 223334555555544321 1258899998764322 2222222223333345 45555432
Q ss_pred -----CeEEEEECCCCcEEE--EecccCCcceEEEEEcCCCCEEEEEeCC-----CcEEEEeC
Q 001349 1043 -----GTVEIWDQKRQIRIE--TLQTGTSGKVQCMALDDNEEFLVIGTSD-----GRIQAWGL 1093 (1094)
Q Consensus 1043 -----g~I~vwd~~t~~~~~--~l~~~h~~~I~~l~~Spdg~~L~sgs~D-----G~I~iWdl 1093 (1094)
..+.+||+.+.+-.. .+.. .......+.+ ++++++.|+.+ ..+.+||+
T Consensus 211 ~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~ 270 (306)
T 3ii7_A 211 GLGGLDNVEYYDIKLNEWKMVSPMPW-KGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNT 270 (306)
T ss_dssp TTEEBCCEEEEETTTTEEEECCCCSC-CBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEET
T ss_pred CCCCCceEEEeeCCCCcEEECCCCCC-CccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcC
Confidence 468999998764221 1211 1112223333 67788888855 45777775
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.88 E-value=1.5 Score=49.08 Aligned_cols=69 Identities=14% Similarity=0.157 Sum_probs=42.8
Q ss_pred ecCCCCEEEEEEeC--------C-EEEEEEcCCeEEEEECCCCcEEEE--ecccCCcceEEEEEcCCCCEEEEEe-CCCc
Q 001349 1020 LPTLSEVRAMVVSS--------E-LVYLGCKGGTVEIWDQKRQIRIET--LQTGTSGKVQCMALDDNEEFLVIGT-SDGR 1087 (1094)
Q Consensus 1020 ~~~~~~v~~l~~sp--------d-~l~sgs~dg~I~vwd~~t~~~~~~--l~~~h~~~I~~l~~Spdg~~L~sgs-~DG~ 1087 (1094)
+.++..+..+.|.. . ++++....+.|...++..++.... +.......+..+++.|||.+.++.. .+|.
T Consensus 267 ~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~ 346 (353)
T 2g8s_A 267 WKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGE 346 (353)
T ss_dssp ESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEE
T ss_pred eCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCE
Confidence 34455677888853 2 455445667888888776544332 2223335799999999998666543 4554
Q ss_pred E
Q 001349 1088 I 1088 (1094)
Q Consensus 1088 I 1088 (1094)
|
T Consensus 347 I 347 (353)
T 2g8s_A 347 L 347 (353)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.81 Score=50.28 Aligned_cols=213 Identities=11% Similarity=0.024 Sum_probs=110.0
Q ss_pred cCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCceEEEEecccC----c---cceeeeecCceEEE---eeCCCeEEE
Q 001349 854 HTKAVTGLAILQSGEMLYSGS-LDKTARVWSIGNEEIHCVQVHDIK----D---QIQNLAVSNSILCF---IPQGAGIKV 922 (1094)
Q Consensus 854 H~~~V~sv~fspdg~~LaSgs-~DgtI~vWdi~~~~~~~~~~~~~~----~---~V~~v~~~~~~~~f---spdg~~l~~ 922 (1094)
..-.-.+++|++....++.++ ..++|..||..++....+ ..+.- . .+.. +.+ .|+|+.+++
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sG-------l~~~~~D~~grL~vv 82 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSG-------LSLLTHDNSKRLFAV 82 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEE-------EEESSSSSCCEEEEE
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeE-------EEEeccCCCCcEEEE
Confidence 333445788988555555555 789999999986643333 22110 0 1122 224 344433221
Q ss_pred EEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECC---CCceeEEeccceeec------C-CCCCeEEEEEeCC
Q 001349 923 HLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA---TGTFATIQTGHRKLL------G-KANPVHALQVHNG 992 (1094)
Q Consensus 923 ~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~---~~~~~~~~~~~~~~~------~-h~~~V~sl~fs~~ 992 (1094)
...... |+.. +.. -+.++.|..||+. +++......-..... + -......++..++
T Consensus 83 ~~~~~a---f~~~---------g~~---~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~ 147 (334)
T 2p9w_A 83 MKNAKS---FNFA---------DQS---SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRD 147 (334)
T ss_dssp EEETTT---TCTT---------SCC---SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTT
T ss_pred Eccccc---cccc---------ccc---cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCC
Confidence 110000 0000 000 0136789999998 777654322110000 1 1134788999999
Q ss_pred ccEEEEEECC-CCEEEEEECCCCeEEEEec-------CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcE--EEEec
Q 001349 993 LVYTASTSLD-GAAVKMWSTSNYNMVGSLP-------TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIR--IETLQ 1060 (1094)
Q Consensus 993 ~~~las~s~D-g~~I~iwd~~~~~~~~~~~-------~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~--~~~l~ 1060 (1094)
+...++++.. + .|..++.... .+..+. .....+.|+++|+ .|++...+|.+..+|+.+... +..-.
T Consensus 148 GnaYVt~s~~~~-~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~ 225 (334)
T 2p9w_A 148 GNSYVAFALGMP-AIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKI 225 (334)
T ss_dssp SCEEEEEEESSC-EEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEE
T ss_pred CCEEEeCCCCCC-eEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccc
Confidence 8888877765 5 6665555432 222221 1223679999987 566665599999999885433 21100
Q ss_pred ccC---CcceEE-EEEcCCCCE-EEEEeCCCcEEEE
Q 001349 1061 TGT---SGKVQC-MALDDNEEF-LVIGTSDGRIQAW 1091 (1094)
Q Consensus 1061 ~~h---~~~I~~-l~~Spdg~~-L~sgs~DG~I~iW 1091 (1094)
.+. ...... +..-.+|+. +++.+..+.+.+.
T Consensus 226 ~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~ 261 (334)
T 2p9w_A 226 NGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFR 261 (334)
T ss_dssp SSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred cCCcccccCcccccccccCCEEEEEEcCCCCEEEEE
Confidence 021 112334 334457777 5555556655543
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.64 E-value=1.7 Score=47.44 Aligned_cols=123 Identities=10% Similarity=0.115 Sum_probs=60.0
Q ss_pred CeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC----CEEEEEECCCCeEE--EEecCCCCEEE
Q 001349 955 GAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG----AAVKMWSTSNYNMV--GSLPTLSEVRA 1028 (1094)
Q Consensus 955 g~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg----~~I~iwd~~~~~~~--~~~~~~~~v~~ 1028 (1094)
..+.+||+.+++............ -.+++...+..+++.|..++ ..+.+||..+.+-. ..+.....-.+
T Consensus 117 ~~~~~~d~~~~~W~~~~~~p~~r~-----~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 191 (315)
T 4asc_A 117 DSVMCYDRLSFKWGESDPLPYVVY-----GHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFG 191 (315)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCB-----SCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCE
T ss_pred ceEEEECCCCCcEeECCCCCCccc-----ceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceE
Confidence 468899998876543211111111 12333445555555443121 26889998875422 22222211122
Q ss_pred EEEeCC-EEEEEEcCC-----eEEEEECCCCcEEEEecccCCc--ceEEEEEcCCCCEEEEEeCC
Q 001349 1029 MVVSSE-LVYLGCKGG-----TVEIWDQKRQIRIETLQTGTSG--KVQCMALDDNEEFLVIGTSD 1085 (1094)
Q Consensus 1029 l~~spd-~l~sgs~dg-----~I~vwd~~t~~~~~~l~~~h~~--~I~~l~~Spdg~~L~sgs~D 1085 (1094)
++...+ .++.|+.++ .+.+||+.+.+-.. +...... ....+.+ ++++++.|+.+
T Consensus 192 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~~--~~~l~v~GG~~ 253 (315)
T 4asc_A 192 ATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAP-FEAFPQERSSLSLVSL--VGTLYAIGGFA 253 (315)
T ss_dssp EEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEE-ECCCSSCCBSCEEEEE--TTEEEEEEEEE
T ss_pred EEEECCEEEEEeccCCCCccceEEEEECCCCeEEE-CCCCCCcccceeEEEE--CCEEEEECCcc
Confidence 333344 555665543 58899998764222 2111111 1122222 57778888764
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=1.6 Score=48.86 Aligned_cols=126 Identities=10% Similarity=0.163 Sum_probs=74.5
Q ss_pred CCeEEEEECCCCceeEEeccceeecCC-CCCeEEEEEeCCccEEEEEEC---C-------------CCEEEEEECCCCeE
Q 001349 954 DGAIQEIDLATGTFATIQTGHRKLLGK-ANPVHALQVHNGLVYTASTSL---D-------------GAAVKMWSTSNYNM 1016 (1094)
Q Consensus 954 Dg~I~iwDl~~~~~~~~~~~~~~~~~h-~~~V~sl~fs~~~~~las~s~---D-------------g~~I~iwd~~~~~~ 1016 (1094)
+.+|.+|++..+....... ..+.+. -...+.+.+.+++.+.++... | .+.|.-+|. ++.
T Consensus 138 ~s~ielf~~d~~~~~~~~~--~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~ 213 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHL--KTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV 213 (355)
T ss_dssp CCEEEEEEEETTTTEEEEE--EEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC
T ss_pred CCeEEEEEEECCCCEEEEE--eccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE
Confidence 4667777665432211111 222222 246789999999988777541 1 124444544 333
Q ss_pred EEEecCCCCEEEEEEeCC--EEEEE-EcCCeEEEEECCC-CcE--EEEecccCCcceEEEEEcC-CCCEEEEEeCC
Q 001349 1017 VGSLPTLSEVRAMVVSSE--LVYLG-CKGGTVEIWDQKR-QIR--IETLQTGTSGKVQCMALDD-NEEFLVIGTSD 1085 (1094)
Q Consensus 1017 ~~~~~~~~~v~~l~~spd--~l~sg-s~dg~I~vwd~~t-~~~--~~~l~~~h~~~I~~l~~Sp-dg~~L~sgs~D 1085 (1094)
......-...+.++|+|| .++.+ +..+.|+.|++.. ++. ...+ ...+..-.+++.+ +|++.+++..+
T Consensus 214 ~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~--~~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 214 RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL--SFDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE--eCCCCCceEEEeCCCCcEEEEecCC
Confidence 222334466889999999 55555 4678999999863 332 2233 1245678899998 59887766544
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=1.7 Score=48.47 Aligned_cols=200 Identities=10% Similarity=0.095 Sum_probs=98.1
Q ss_pred CCCeEEEEecCC--CcceeEEEecc-----cCCCeEEEEEec--CCC-EEEEE-eC--CCcEEEEECCCCc--eEEEEec
Q 001349 831 SDGTIKVWTGRG--SILHLIQQIRE-----HTKAVTGLAILQ--SGE-MLYSG-SL--DKTARVWSIGNEE--IHCVQVH 895 (1094)
Q Consensus 831 ~Dg~I~vWd~~t--~~~~~~~~l~~-----H~~~V~sv~fsp--dg~-~LaSg-s~--DgtI~vWdi~~~~--~~~~~~~ 895 (1094)
.+|.|.++|..+ .+...+. +.+ ..-....+.+.+ +|. +|+.+ .. +.+|.+|+++.+. ...+...
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~-~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~ 159 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELE-IIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTI 159 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECE-EECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEE
T ss_pred CCCeEEEEecCCCCCceEEEE-ccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecc
Confidence 689999999874 3222222 222 234677788766 354 34443 22 4677887776532 2222222
Q ss_pred ccCccceeeeecCceEEEeeCCCeEEEEEeC-C--eEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEec
Q 001349 896 DIKDQIQNLAVSNSILCFIPQGAGIKVHLRN-G--KTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQT 972 (1094)
Q Consensus 896 ~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~-g--~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~ 972 (1094)
.. .+.. .++.+.+.++|...+..... . ....+. .+.+...|.|..||.. +.....
T Consensus 160 ~g-~~~~----~pND~~v~~~G~fyvt~~~~ftd~~~~~~e--------------~~~~~~~g~vyr~d~~--~~~~~~- 217 (355)
T 3sre_A 160 RH-KLLP----SVNDIVAVGPEHFYATNDHYFIDPYLKSWE--------------MHLGLAWSFVTYYSPN--DVRVVA- 217 (355)
T ss_dssp CC-TTCS----SEEEEEEEETTEEEEEESCSCSSHHHHHHH--------------HHTTCCCEEEEEECTT--CCEEEE-
T ss_pred cc-CCCC----CCceEEEeCCCCEEecCCcEeCCcccccch--------------hhccCCccEEEEEECC--eEEEee-
Confidence 21 1111 12334466776643322100 0 000000 0000112455556552 221111
Q ss_pred cceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCC-CeE--EEEecCCCCEEEEEEeC-C-EEEEEE-cC-CeE
Q 001349 973 GHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN-YNM--VGSLPTLSEVRAMVVSS-E-LVYLGC-KG-GTV 1045 (1094)
Q Consensus 973 ~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~-~~~--~~~~~~~~~v~~l~~sp-d-~l~sgs-~d-g~I 1045 (1094)
..-...+.++|+||+..+..+....+.|..|++.. +.. .+.+......-.+++++ + .++++. .+ +.|
T Consensus 218 ------~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~~g~~v 291 (355)
T 3sre_A 218 ------EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRI 291 (355)
T ss_dssp ------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESCHHHH
T ss_pred ------cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecCCceEE
Confidence 11135689999999977666655556999999863 332 22343456678888887 4 454433 33 344
Q ss_pred EEEECC--CCcEEEEe
Q 001349 1046 EIWDQK--RQIRIETL 1059 (1094)
Q Consensus 1046 ~vwd~~--t~~~~~~l 1059 (1094)
..||.. .+..+..+
T Consensus 292 ~~~~P~~~~~s~v~rI 307 (355)
T 3sre_A 292 FFYDAENPPGSEVLRI 307 (355)
T ss_dssp HSCCTTSCCCEEEEEE
T ss_pred EEECCCCCCCCEEEEE
Confidence 444443 24444444
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=95.33 E-value=8.2 Score=47.75 Aligned_cols=261 Identities=12% Similarity=0.109 Sum_probs=144.3
Q ss_pred cEEEEEEeC--CEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEE
Q 001349 815 KVLSIACFR--DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCV 892 (1094)
Q Consensus 815 ~V~~l~fsp--d~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~ 892 (1094)
.|.++...+ +.|..|+. +-+..+|..++.......+ ....|.++....+|.+.+ |+.+| +.+++..++.....
T Consensus 192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l--~~~~i~~i~~d~~g~lWi-gT~~G-l~~~~~~~~~~~~~ 266 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAF--HNNSIKSLALDGNGDLLA-GTDNG-LYVYHNDTTPLQHI 266 (758)
T ss_dssp CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEE--EEEEEEEEEECTTCCEEE-EETTE-EEEECCTTSCCEEE
T ss_pred eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCC--CCCeEEEEEEcCCCCEEE-EeCCc-eeEEecCCCcEEEE
Confidence 488888875 35666664 4578889887743332222 234588888887777655 44554 78888877654333
Q ss_pred Eecc------cCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC-----------------CCCceEEEEe-CCEE
Q 001349 893 QVHD------IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS-----------------SKYPKCLALV-QGKV 948 (1094)
Q Consensus 893 ~~~~------~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~-----------------~~~v~~l~~s-~~~l 948 (1094)
.... ....|.++. ...+|. +-+++..| +.++.. ...|.++... ++.+
T Consensus 267 ~~~~~~~~~l~~~~i~~i~-------~D~~g~-lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~l 337 (758)
T 3ott_A 267 IHDSRNIQSLTNNIIWNIF-------ADQEHN-IWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFY 337 (758)
T ss_dssp CCCTTCTTSCSCSCEEEEE-------ECTTCC-EEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCE
T ss_pred EcCCCCcCcCCcCeEEEEE-------EcCCCC-EEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCE
Confidence 2111 112344443 223333 33333334 222211 1245666554 4678
Q ss_pred EEEEcCCeEEEEECCCCce--eEEeccc-eeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEe--c--
Q 001349 949 YCGCQDGAIQEIDLATGTF--ATIQTGH-RKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL--P-- 1021 (1094)
Q Consensus 949 ~sgs~Dg~I~iwDl~~~~~--~~~~~~~-~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~--~-- 1021 (1094)
.+|+.+ -+..++..++.. ...+... ....-....|.++.-..++.+-++. ++ -+..||..+++..... .
T Consensus 338 WiGt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt--~~-GL~~~~~~~~~~~~~~~~~~~ 413 (758)
T 3ott_A 338 WFGGAN-GLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT--DG-SINRYDYATRQFIHYNIVDNT 413 (758)
T ss_dssp EEEETT-EEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE--TT-EEEEEETTTTEEEEEEEECCC
T ss_pred EEeeCC-cceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEe--CC-cHhhcCcCCCcEEEeecCCCc
Confidence 888865 566777665421 1111100 0000112468888887776554443 33 5999999887654321 1
Q ss_pred ---CCCCEEEEEEeCC-EEEEEEcCCeEEEEECCC-----CcEE---EEec--cc-CCcceEEEEEcCCCCEEEEEeCCC
Q 001349 1022 ---TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKR-----QIRI---ETLQ--TG-TSGKVQCMALDDNEEFLVIGTSDG 1086 (1094)
Q Consensus 1022 ---~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t-----~~~~---~~l~--~~-h~~~I~~l~~Spdg~~L~sgs~DG 1086 (1094)
....|.++..+++ .+..|+..+-|.++|..+ +... ..+. .+ ....|.++...++|.+.+.++..+
T Consensus 414 ~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~ 493 (758)
T 3ott_A 414 GTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNK 493 (758)
T ss_dssp --CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCS
T ss_pred CCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCC
Confidence 1245888888776 888999877788998653 1222 1221 11 123589999998888766333333
Q ss_pred cEEEEeC
Q 001349 1087 RIQAWGL 1093 (1094)
Q Consensus 1087 ~I~iWdl 1093 (1094)
-|..+|.
T Consensus 494 Gl~~~d~ 500 (758)
T 3ott_A 494 GIDKINP 500 (758)
T ss_dssp SEEEEET
T ss_pred CcEEEeC
Confidence 4655653
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.25 E-value=2.3 Score=46.41 Aligned_cols=122 Identities=15% Similarity=0.225 Sum_probs=59.1
Q ss_pred eEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC----CEEEEEECCCCeEEE--EecCCCCEEEE
Q 001349 956 AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG----AAVKMWSTSNYNMVG--SLPTLSEVRAM 1029 (1094)
Q Consensus 956 ~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg----~~I~iwd~~~~~~~~--~~~~~~~v~~l 1029 (1094)
.+.+||+.+.+............+| +++...+..+++.|..++ ..+.+||..+.+-.. .+.....-.++
T Consensus 128 ~~~~yd~~~~~W~~~~~~p~~r~~~-----~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 202 (318)
T 2woz_A 128 SVLCYDPVAAKWSEVKNLPIKVYGH-----NVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGV 202 (318)
T ss_dssp EEEEEETTTTEEEEECCCSSCEESC-----EEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred eEEEEeCCCCCEeECCCCCCccccc-----EEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceE
Confidence 5788999887765432211112222 233345555555443221 258999998764222 22222111233
Q ss_pred EEeCC-EEEEEEcC-----CeEEEEECCCCcEEE--EecccCCcceEEEEEcCCCCEEEEEeCC
Q 001349 1030 VVSSE-LVYLGCKG-----GTVEIWDQKRQIRIE--TLQTGTSGKVQCMALDDNEEFLVIGTSD 1085 (1094)
Q Consensus 1030 ~~spd-~l~sgs~d-----g~I~vwd~~t~~~~~--~l~~~h~~~I~~l~~Spdg~~L~sgs~D 1085 (1094)
+...+ .++.|+.+ ..+.+||+.+.+-.. .+.. .......+. .++++++.|+.+
T Consensus 203 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~--~~~~i~v~GG~~ 263 (318)
T 2woz_A 203 AIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQ-ERSSISLVS--LAGSLYAIGGFA 263 (318)
T ss_dssp EEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSS-CCBSCEEEE--ETTEEEEECCBC
T ss_pred EEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCC-cccceEEEE--ECCEEEEECCee
Confidence 33444 55555432 457889988765221 1211 111112222 357777877754
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=7.6 Score=46.87 Aligned_cols=296 Identities=12% Similarity=-0.009 Sum_probs=155.2
Q ss_pred CcEEE-EeeCCCCeEEEeCCcc---eeecccCCCcEEEEEEeC--C-EEEEEECCCeEEEEecCCCcceeEEEecccCCC
Q 001349 785 MVKVL-SNGHDSSADFWNHREL---VHVDSSENGKVLSIACFR--D-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKA 857 (1094)
Q Consensus 785 ~~~l~-s~s~dg~I~vWd~~~~---~~~~~~h~~~V~~l~fsp--d-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~ 857 (1094)
...|+ +-...+.|..++.... ..+....-.....+++.+ + ++++-...+.|.+.+..+.. ....+...-..
T Consensus 51 ~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~--~~~l~~~~l~~ 128 (619)
T 3s94_A 51 HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL--RKVLFWQELDQ 128 (619)
T ss_dssp TTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECSSCSC
T ss_pred CCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC--EEEEEeCCCCC
Confidence 44444 4344577777777632 223333335788899986 3 55556677999999998762 22222234455
Q ss_pred eEEEEEecCCCEEEEEeC--CCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeC-CeEEEEcC
Q 001349 858 VTGLAILQSGEMLYSGSL--DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRN-GKTKLLNS 934 (1094)
Q Consensus 858 V~sv~fspdg~~LaSgs~--DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~-g~i~l~~~ 934 (1094)
...|++.|.+.+|+.+.. .+.|...+++......+.... -.. |..+++++++..+.+.... +.+..++.
T Consensus 129 P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~-~~~-------P~Glald~~~~~LY~aD~~~~~I~~~~~ 200 (619)
T 3s94_A 129 PRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE-IYW-------PNGLTLDYEEQKLYWADAKLNFIHKSNL 200 (619)
T ss_dssp CCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS-CSS-------EEEEEEETTTTEEEEEETTTCCEEEESS
T ss_pred CceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCC-CCC-------CcEEEEEccCCEEEEEeCCCCeEEEecC
Confidence 778999997555554443 356766777654433332211 122 2334477766555554432 44555443
Q ss_pred C------------CCceEEEEeCCEEEEEE-cCCeEEEEECCCCceeEEeccc-------------eeecCCC------C
Q 001349 935 S------------KYPKCLALVQGKVYCGC-QDGAIQEIDLATGTFATIQTGH-------------RKLLGKA------N 982 (1094)
Q Consensus 935 ~------------~~v~~l~~s~~~l~sgs-~Dg~I~iwDl~~~~~~~~~~~~-------------~~~~~h~------~ 982 (1094)
. .....+++.++.++... ..+.|...|..+|+........ ....+.. +
T Consensus 201 dG~~~~~~~~~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng 280 (619)
T 3s94_A 201 DGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNG 280 (619)
T ss_dssp SCCEEC---------CCCEEESSSEEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGG
T ss_pred CCCccEEEEeCCCCCceEEEEeCCEEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCC
Confidence 2 23455666666766654 4578888998777543221100 0000000 0
Q ss_pred CeEEEEE-----------eCC---------------ccEEEEEECCCCEEEEEECCCCeEE-EEe--cCCCCEEEEEEeC
Q 001349 983 PVHALQV-----------HNG---------------LVYTASTSLDGAAVKMWSTSNYNMV-GSL--PTLSEVRAMVVSS 1033 (1094)
Q Consensus 983 ~V~sl~f-----------s~~---------------~~~las~s~Dg~~I~iwd~~~~~~~-~~~--~~~~~v~~l~~sp 1033 (1094)
....+++ .|. ..+++.+. . ..|+..++...... ..+ ..-..+.+++|++
T Consensus 281 ~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~-~-~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~ 358 (619)
T 3s94_A 281 GCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLAR-R-TDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDP 358 (619)
T ss_dssp GCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEE-S-SCEEEEESSSTTCCCEECCCSCCSSEEEEEEET
T ss_pred cccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEc-c-cceEEEecCCCccceeEEeccccCccEEEEEEc
Confidence 0111111 111 11222222 1 24565666543211 111 2335678899987
Q ss_pred C--EEEEEE-cCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEE-EEEeCCCcEEEEeC
Q 001349 1034 E--LVYLGC-KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFL-VIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1034 d--~l~sgs-~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L-~sgs~DG~I~iWdl 1093 (1094)
. .++.+. ..+.|+.+++........+ .........+++...+..| ++-+..+.|.+.++
T Consensus 359 ~~~~ly~sD~~~~~I~r~~~~g~~~~~v~-~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~ 421 (619)
T 3s94_A 359 VEGYIYWTDDEVRAIRRSFIDGSGSQFVV-TAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRL 421 (619)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCCeEEEEeCCCCeEEEEEcCCCccEEEE-ECCCCCcCceEEecccCcEEEEeCCCCcEEEEeC
Confidence 3 555554 5788999998765433333 2233467889998755544 44445677777654
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=95.11 E-value=1.3 Score=48.21 Aligned_cols=111 Identities=9% Similarity=0.026 Sum_probs=57.1
Q ss_pred cccccccCcEEEEeeCC----CCeEEEeCCcceeec----ccCCCcEEEEEEeCCEEEEEEC----C-----CeEEEEec
Q 001349 778 YSPLAFEMVKVLSNGHD----SSADFWNHRELVHVD----SSENGKVLSIACFRDKIFSGHS----D-----GTIKVWTG 840 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~d----g~I~vWd~~~~~~~~----~~h~~~V~~l~fspd~LaSgs~----D-----g~I~vWd~ 840 (1094)
..+...++..++.||.+ ..+.+||..+..... ......-..+.+...+++.|+. + ..+.+||.
T Consensus 18 ~~~~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~ 97 (308)
T 1zgk_A 18 SHAPKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNP 97 (308)
T ss_dssp ---CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEET
T ss_pred ccccCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECC
Confidence 45555667777777742 456777776322111 1111111223333335555554 2 46888999
Q ss_pred CCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCC-----CcEEEEECCCCceE
Q 001349 841 RGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD-----KTARVWSIGNEEIH 890 (1094)
Q Consensus 841 ~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D-----gtI~vWdi~~~~~~ 890 (1094)
.++.+..+..+......-..+.+ ++++++.|+.+ ..+.+||..+++..
T Consensus 98 ~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 150 (308)
T 1zgk_A 98 MTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWH 150 (308)
T ss_dssp TTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEE
T ss_pred CCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEe
Confidence 98865554433322222222222 66777777643 35778888876543
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.02 E-value=3.1 Score=46.39 Aligned_cols=95 Identities=8% Similarity=0.065 Sum_probs=54.8
Q ss_pred ccccccCcEEEEeeCCCCeEEEeCCccee-----ecccCCCcEEEEEEeCC-----EEEEEECC------CeEEEEecCC
Q 001349 779 SPLAFEMVKVLSNGHDSSADFWNHRELVH-----VDSSENGKVLSIACFRD-----KIFSGHSD------GTIKVWTGRG 842 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~dg~I~vWd~~~~~~-----~~~~h~~~V~~l~fspd-----~LaSgs~D------g~I~vWd~~t 842 (1094)
..+.+++..++ +..+|.|.+++-..... +..........|+|+|+ .|+.+... +.|..|+..+
T Consensus 36 ia~~pdG~l~V-~e~~g~I~~i~~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~ 114 (352)
T 2ism_A 36 LAFLPDGGMLI-AERPGRIRLFREGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLG 114 (352)
T ss_dssp EEECTTSCEEE-EETTTEEEEEETTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECS
T ss_pred EEEcCCCeEEE-EeCCCeEEEEECCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCC
Confidence 34556777444 45668898887222111 11223467899999996 66555432 6788888775
Q ss_pred Ccc---ee-EEEec---ccCCCeEEEEEecCCCEEEEEe
Q 001349 843 SIL---HL-IQQIR---EHTKAVTGLAILQSGEMLYSGS 874 (1094)
Q Consensus 843 ~~~---~~-~~~l~---~H~~~V~sv~fspdg~~LaSgs 874 (1094)
+.. +. +..+. +.......++|.|||.+.++.+
T Consensus 115 ~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 115 ERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp SCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred CCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 421 11 22233 1111236899999997766654
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=94.73 E-value=0.098 Score=64.65 Aligned_cols=219 Identities=11% Similarity=0.002 Sum_probs=107.1
Q ss_pred CCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEE-eCCCcEEEEECCCCceEEEEecccCccceeeeecCce
Q 001349 832 DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSG-SLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSI 910 (1094)
Q Consensus 832 Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSg-s~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~ 910 (1094)
.+.|++.++.+. .....+ .....+..|+|++.+..|+.+ ...+.|+.+++.+.... ......+..-...+..
T Consensus 385 ~~~I~~id~~~~--~~~~~~-~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~----~~~~~~i~~~~~~P~g 457 (699)
T 1n7d_A 385 RHEVRKMTLDRS--EYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV----SSYDTVISRDIQAPDG 457 (699)
T ss_dssp TTC-CEECTTSC--CEECCS-CCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-----CCCCCBCCSCC--CCC
T ss_pred ccceEEEeCCCC--cceeee-ccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCC----cceEEEEeCCCCCcce
Confidence 357788888776 222222 233456789999866666554 44578888888751000 0000000000001111
Q ss_pred EEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEE-EcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEE
Q 001349 911 LCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCG-CQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQV 989 (1094)
Q Consensus 911 ~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sg-s~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~f 989 (1094)
+++.+.+ +.|+.+ ...+.|.++++.......... ........+++
T Consensus 458 lavD~~~----------------------------g~LY~tD~~~~~I~v~d~dg~~~~~l~~------~~~~~P~giav 503 (699)
T 1n7d_A 458 LAVDWIH----------------------------SNIYWTDSVLGTVSVADTKGVKRKTLFR------EQGSKPRAIVV 503 (699)
T ss_dssp EECCCSS----------------------------SBCEECCTTTSCEEEEBSSSCCEEEECC------CSSCCCCCEEC
T ss_pred EEEEeeC----------------------------CcEEEEeccCCeEEEEecCCCceEEEEe------CCCCCcceEEE
Confidence 2232222 223222 345677777776544322111 11133567788
Q ss_pred eCCcc-EEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEE-EEcCCeEEEEECCCCcEEEEecc-cC
Q 001349 990 HNGLV-YTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYL-GCKGGTVEIWDQKRQIRIETLQT-GT 1063 (1094)
Q Consensus 990 s~~~~-~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~s-gs~dg~I~vwd~~t~~~~~~l~~-~h 1063 (1094)
+|.+. ++++-....+.|..+++........+. .-.....|+|+++ .|+. -+..+.|.++|+........+.. +.
T Consensus 504 Dp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~ 583 (699)
T 1n7d_A 504 DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR 583 (699)
T ss_dssp CSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSS
T ss_pred ccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCc
Confidence 87433 333321121367777764322211122 2345678999975 4444 45668899999875433322211 11
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1064 SGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1064 ~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
......|++..+ .++++....+.|..++
T Consensus 584 ~~~P~glavd~~-~lywtd~~~~~V~~~d 611 (699)
T 1n7d_A 584 LAHPFSLAVFED-KVFWTDIINEAIFSAN 611 (699)
T ss_dssp CSSCCCCEEETT-EEEEECSTTTCEEEEE
T ss_pred CCCceEeEEECC-EEEEEeCCCCeEEEEE
Confidence 223455666543 4445555567788776
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=94.69 E-value=0.096 Score=64.59 Aligned_cols=219 Identities=14% Similarity=0.106 Sum_probs=131.7
Q ss_pred ccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHH-HHhcC----hHHHHHHHHhcCCCh-----HHHHHhhh
Q 001349 323 FNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVA-LFKKG----LLEAVVLIDLLRPST-----RTLIEMDM 392 (1094)
Q Consensus 323 ~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~-lLk~g----~~~Aa~~l~~L~~~~-----~~~~~~~~ 392 (1094)
+.|.+..++..|...|.+|.. +.+.++.+.+. +.+..++. +|.-. +.+|+.+|.+|.... ..+..-+.
T Consensus 43 L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~-~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~i 120 (684)
T 4gmo_A 43 LKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLRE-QVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDV 120 (684)
T ss_dssp HSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHT-THHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTH
T ss_pred cCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHc-CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcCh
Confidence 357888999999999999964 66666666644 45555554 44322 778999999996432 34455566
Q ss_pred hHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHH
Q 001349 393 MESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRC 472 (1094)
Q Consensus 393 ~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~ 472 (1094)
+++|++.|++..+.. .....+.. ......-..+.+. -.++..+|.+.
T Consensus 121 l~~L~~~l~~~~~~~-~~~~~~~~------------------------~~~~~~~~~~~~~--------~~~~l~lL~~L 167 (684)
T 4gmo_A 121 LTAIEHAAKAVLETL-TTSEPPFS------------------------KLLKAQQRLVWDI--------TGSLLVLIGLL 167 (684)
T ss_dssp HHHHHHHHHHHHHHH-HCBTTBGG------------------------GSCHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHH-hhhccccc------------------------cccHHHHHHHHHH--------HHHHHHHHHHH
Confidence 799999998742210 00000000 0000000001111 11233445555
Q ss_pred hhccCcchhhHhhhcCchhHHHHHHhcCC---chhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhc
Q 001349 473 MQEDGKCRNSIADKAELAPVMESFMAASD---GERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTA 549 (1094)
Q Consensus 473 ~~~~~~~r~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~ 549 (1094)
+..+..-...+.....++.++.+|..... ..+..|.++|+.|..- +.++.+.|.+.+....|.+++.. ++.
T Consensus 168 ~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~d-----n~~~~~~i~~~~~~~~~~~ll~~-~~~ 241 (684)
T 4gmo_A 168 ALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSED-----NLKVGQAITDDQETHVYDVLLKL-ATG 241 (684)
T ss_dssp HHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTT-----CHHHHHHHHTCCSSCHHHHHHHH-HHS
T ss_pred HhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcc-----CHHHHHHHHhcchHHHHHHHHHH-hcC
Confidence 55555666667777788888887765432 3455678888888655 55778888888877777766654 455
Q ss_pred CCccchhHHHHHHhhhcccCCCCCCccHHHHHH
Q 001349 550 NHDQCPVVAGLLLQLDLLAEPRKMSIYREEAID 582 (1094)
Q Consensus 550 ~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~ 582 (1094)
..-.+-+++++|..+-.-.....++.|...++.
T Consensus 242 ~~~~~~la~giL~Ni~~~~~~~d~s~~~~~~~~ 274 (684)
T 4gmo_A 242 TDPRAVMACGVLHNVFTSLQWMDHSPGKDGACD 274 (684)
T ss_dssp SCTTHHHHHHHHHHHHHHHTCBTTBCCGGGCSG
T ss_pred CcHHHHHHHHHHHhHhhhhhhhhcchhhHHHHH
Confidence 555678889998876433344455666655544
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=94.68 E-value=1.1 Score=48.78 Aligned_cols=130 Identities=13% Similarity=0.236 Sum_probs=64.1
Q ss_pred CeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC----CEEEEEECCCCeEEE--EecCCCCEEE
Q 001349 955 GAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG----AAVKMWSTSNYNMVG--SLPTLSEVRA 1028 (1094)
Q Consensus 955 g~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg----~~I~iwd~~~~~~~~--~~~~~~~v~~ 1028 (1094)
..+.+||+.+++............+ .+++...+..+++ |+.++ ..+.+||..+.+-.. .+.....-.+
T Consensus 137 ~~~~~yd~~~~~W~~~~~~p~~r~~-----~~~~~~~~~iyv~-GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 210 (308)
T 1zgk_A 137 NSVERYEPERDEWHLVAPMLTRRIG-----VGVAVLNRLLYAV-GGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAG 210 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBS-----CEEEEETTEEEEE-CCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCE
T ss_pred ccEEEECCCCCeEeECCCCCccccc-----eEEEEECCEEEEE-eCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccce
Confidence 4688899988765532211111111 1233334444444 43332 258899987754322 1222111122
Q ss_pred EEEeCC-EEEEEEcC-----CeEEEEECCCCcEEEEecccCC--cceEEEEEcCCCCEEEEEeCCC-----cEEEEeC
Q 001349 1029 MVVSSE-LVYLGCKG-----GTVEIWDQKRQIRIETLQTGTS--GKVQCMALDDNEEFLVIGTSDG-----RIQAWGL 1093 (1094)
Q Consensus 1029 l~~spd-~l~sgs~d-----g~I~vwd~~t~~~~~~l~~~h~--~~I~~l~~Spdg~~L~sgs~DG-----~I~iWdl 1093 (1094)
++...+ .++.|+.+ ..+.+||+.+.+-. .+..... .....+. -++++++.|+.++ .|.+||+
T Consensus 211 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~-~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~ 285 (308)
T 1zgk_A 211 VCVLHNCIYAAGGYDGQDQLNSVERYDVETETWT-FVAPMKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDP 285 (308)
T ss_dssp EEEETTEEEEECCBCSSSBCCCEEEEETTTTEEE-ECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEET
T ss_pred EEEECCEEEEEeCCCCCCccceEEEEeCCCCcEE-ECCCCCCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcC
Confidence 333345 55556543 56999999876422 2211111 1112222 2677888887543 4677775
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.32 E-value=3.6 Score=44.64 Aligned_cols=95 Identities=13% Similarity=0.189 Sum_probs=47.9
Q ss_pred CeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC---CEEEEEECCCCeEEE--EecCCCCEEEE
Q 001349 955 GAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG---AAVKMWSTSNYNMVG--SLPTLSEVRAM 1029 (1094)
Q Consensus 955 g~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg---~~I~iwd~~~~~~~~--~~~~~~~v~~l 1029 (1094)
..+.+||+.+.+......... ...-.++....+..+++.|..+. ..+.+||..+.+-.. .+.....-.++
T Consensus 165 ~~~~~yd~~~~~W~~~~~~p~-----~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 239 (315)
T 4asc_A 165 NKMCVYDPKKFEWKELAPMQT-----ARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSL 239 (315)
T ss_dssp CCEEEEETTTTEEEECCCCSS-----CCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred ceEEEEeCCCCeEEECCCCCC-----chhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeE
Confidence 468899998876543221111 11112333445555555543322 168889988764222 22222222233
Q ss_pred EEeCC-EEEEEEcC--------------CeEEEEECCCCc
Q 001349 1030 VVSSE-LVYLGCKG--------------GTVEIWDQKRQI 1054 (1094)
Q Consensus 1030 ~~spd-~l~sgs~d--------------g~I~vwd~~t~~ 1054 (1094)
+...+ .++.|+.+ +.+.+||+.+.+
T Consensus 240 ~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 240 VSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp EEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred EEECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 33344 55555543 347788988764
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=94.15 E-value=5.1 Score=43.50 Aligned_cols=104 Identities=12% Similarity=0.000 Sum_probs=51.9
Q ss_pred CcEEEEeeCCCCeEEEeCCcceeec---cc-CCCcEEEEEEeCC-EEEEEEC----CC-------eEEEEecCCCcceeE
Q 001349 785 MVKVLSNGHDSSADFWNHRELVHVD---SS-ENGKVLSIACFRD-KIFSGHS----DG-------TIKVWTGRGSILHLI 848 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~~~~~~~---~~-h~~~V~~l~fspd-~LaSgs~----Dg-------~I~vWd~~t~~~~~~ 848 (1094)
...++.|+.+ +..||..+..... .. ....-.+++...+ .++.|+. ++ .+.+||..++.+..+
T Consensus 16 ~~i~~~GG~~--~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 93 (318)
T 2woz_A 16 DLILLVNDTA--AVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL 93 (318)
T ss_dssp EEEEEECSSE--EEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred chhhhccccc--eEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence 3455556543 6778876322111 11 1112233333444 6666762 12 177889888865544
Q ss_pred EEecccCCCeEEEEEecCCCEEEEEeCC-------CcEEEEECCCCceEEE
Q 001349 849 QQIREHTKAVTGLAILQSGEMLYSGSLD-------KTARVWSIGNEEIHCV 892 (1094)
Q Consensus 849 ~~l~~H~~~V~sv~fspdg~~LaSgs~D-------gtI~vWdi~~~~~~~~ 892 (1094)
..+......- +++.. ++.+++.|+.+ ..+.+||..+++...+
T Consensus 94 ~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~ 142 (318)
T 2woz_A 94 PPLPSARCLF-GLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEV 142 (318)
T ss_dssp SCBSSCBCSC-EEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEE
T ss_pred CCCCcccccc-ceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeEC
Confidence 3332211111 22222 66777777754 2477788887754433
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=93.64 E-value=18 Score=44.54 Aligned_cols=285 Identities=13% Similarity=0.109 Sum_probs=149.3
Q ss_pred EEEEeeCCCCeEEEeCCc-ceeec-----ccCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEeccc----C
Q 001349 787 KVLSNGHDSSADFWNHRE-LVHVD-----SSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREH----T 855 (1094)
Q Consensus 787 ~l~s~s~dg~I~vWd~~~-~~~~~-----~~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H----~ 855 (1094)
.+..+..+ -+..++... ....+ ......|.++...++ .|..|+.+| +..+|..++..... ..... .
T Consensus 114 ~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~G-l~~~~~~~~~~~~~-~~~~~~~~~~ 190 (758)
T 3ott_A 114 TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGTYNG-LCRYIPSNGKFEGI-PLPVHSSQSN 190 (758)
T ss_dssp EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEETTE-EEEEETTTTEEEEE-CCCCCTTCSS
T ss_pred cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEeCCC-HhhCccCCCceEEe-cCCCcccccc
Confidence 44445544 455677652 11111 112456888888754 666676654 77788877632111 11111 2
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC-
Q 001349 856 KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS- 934 (1094)
Q Consensus 856 ~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~- 934 (1094)
..|.++...+++..|..|+. +-+..+|..+++........ ...|.++. ...+|.. -+++.+ .+..++.
T Consensus 191 ~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~-~~~i~~i~-------~d~~g~l-WigT~~-Gl~~~~~~ 259 (758)
T 3ott_A 191 LFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFH-NNSIKSLA-------LDGNGDL-LAGTDN-GLYVYHND 259 (758)
T ss_dssp CCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEE-EEEEEEEE-------ECTTCCE-EEEETT-EEEEECCT
T ss_pred ceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCC-CCeEEEEE-------EcCCCCE-EEEeCC-ceeEEecC
Confidence 34888888777776555664 34888998877543322111 22344443 2333332 222222 2333321
Q ss_pred ------------------CCCceEEEEe-CCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccE
Q 001349 935 ------------------SKYPKCLALV-QGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVY 995 (1094)
Q Consensus 935 ------------------~~~v~~l~~s-~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~ 995 (1094)
...|.++... ++.|.+|+..| +.++.. .............-......|.++....++.+
T Consensus 260 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~~G-l~~~~~-~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~l 337 (758)
T 3ott_A 260 TTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTDYG-ISLSRY-NSALQFIPISQITGTGDGNQFYSLFRDSKGFY 337 (758)
T ss_dssp TSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEESSS-EEEECC-CC-CEEEEHHHHSCSCCCCBEEEEEECTTCCE
T ss_pred CCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeCCc-cccccc-CCceeEEecccCCCCCCCceEEEEEEcCCCCE
Confidence 1236666665 46788888777 554433 22211110000000112346888888777665
Q ss_pred EEEEECCCCEEEEEECCCCe--EEEEec--------CCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEec-cc-
Q 001349 996 TASTSLDGAAVKMWSTSNYN--MVGSLP--------TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQ-TG- 1062 (1094)
Q Consensus 996 las~s~Dg~~I~iwd~~~~~--~~~~~~--------~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~-~~- 1062 (1094)
-+.. .+ -+..++..++. ....+. ....|.++.-+.+ .+..|+ ++-+..||..+++...... ..
T Consensus 338 WiGt-~~--Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~ 413 (758)
T 3ott_A 338 WFGG-AN--GLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNT 413 (758)
T ss_dssp EEEE-TT--EEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC
T ss_pred EEee-CC--cceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCc
Confidence 5544 33 36667665432 122222 1245888888776 678888 4579999998875432210 11
Q ss_pred ---CCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1063 ---TSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1063 ---h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
....|.++...++|. |..|+..+-|..+|
T Consensus 414 ~~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~~ 445 (758)
T 3ott_A 414 GTYNTNWTYYIFEDTAGQ-LWISTCLGGIFVVD 445 (758)
T ss_dssp --CBSSSEEEEEECTTSE-EEEEESSSCEEEEE
T ss_pred CCCCCceEEEEEEcCCCC-EEEEECCCceEEEc
Confidence 123688888877765 45566555566654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=93.63 E-value=2.4 Score=54.98 Aligned_cols=255 Identities=12% Similarity=0.048 Sum_probs=128.1
Q ss_pred CCeEEEeCCcceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEE
Q 001349 795 SSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYS 872 (1094)
Q Consensus 795 g~I~vWd~~~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaS 872 (1094)
..|.|-|......+.... -.--+...+|. .++-- ...++.|+|+.+. ..+..+.- ...|.--.|-.+ +.|+-
T Consensus 48 ~~vvIidl~~~~~~~rrp-i~AdsAIMnP~~~iiALr-ag~~lQiFnl~~k--~klks~~~-~e~VvfWkWis~-~~l~l 121 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIRRP-ISADSAIMNPASKVIALK-AGKTLQIFNIEMK--SKMKAHTM-TDDVTFWKWISL-NTVAL 121 (1630)
T ss_pred ceEEEEECCCCCCccccc-ccchhhccCCCcceEEEe-cCCeEEEeehHHh--hhhccccc-CCCceEEEecCC-CeeEE
Confidence 467777776432221111 11112234453 33333 4789999999987 45555443 345666677543 44444
Q ss_pred EeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEE
Q 001349 873 GSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGC 952 (1094)
Q Consensus 873 gs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs 952 (1094)
.+. ..|..|++.+.. .....++......+..+ -....+++.+++++.+-. ..+ |.
T Consensus 122 VT~-~aVyHW~~~~~s-~P~k~fdR~~~L~~~QI--inY~~d~~~kW~~l~gi~----------------~~~-----~~ 176 (1630)
T 1xi4_A 122 VTD-NAVYHWSMEGES-QPVKMFDRHSSLAGCQI--INYRTDAKQKWLLLTGIS----------------AQQ-----NR 176 (1630)
T ss_pred EcC-CeEEEeccCCCC-ccHHHHhcchhcccCee--EEeeeCCCCCeEEEEeec----------------cCC-----Cc
Confidence 443 469999996532 22222211111110000 011245555555433211 111 23
Q ss_pred cCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEe--CC-ccEEEEE--ECCCCEEEEEECCCC---eEEE------
Q 001349 953 QDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVH--NG-LVYTAST--SLDGAAVKMWSTSNY---NMVG------ 1018 (1094)
Q Consensus 953 ~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs--~~-~~~las~--s~Dg~~I~iwd~~~~---~~~~------ 1018 (1094)
..|.+++|....+.. +.+.||......+... +. ...++.+ ...|+.++|-++... .+..
T Consensus 177 v~G~mQLyS~er~~s-------Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~ 249 (1630)
T 1xi4_A 177 VVGAMQLYSVDRKVS-------QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVD 249 (1630)
T ss_pred ccceeeeeecccccc-------hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCcccccc
Confidence 458899998876654 3445555444444332 11 1111111 123458999988542 1111
Q ss_pred -Eec---CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcE
Q 001349 1019 -SLP---TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRI 1088 (1094)
Q Consensus 1019 -~~~---~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I 1088 (1094)
.++ ..+...++.+++. .++.-+.-|.|++||+.||.++..-. -....|...+.+....-++.....|.|
T Consensus 250 ~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~r-is~~~iF~~~~~~~~~g~~~vnr~G~v 324 (1630)
T 1xi4_A 250 VFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR-ISGETIFVTAPHEATAGIIGVNRKGQV 324 (1630)
T ss_pred ccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcc-ccCCceEEeccCCCCCceEEEcCCceE
Confidence 011 1344567888887 68888999999999999998776542 223344433333332333434445544
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=93.52 E-value=13 Score=42.33 Aligned_cols=202 Identities=10% Similarity=0.137 Sum_probs=121.5
Q ss_pred CcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC-----------CCceEEEEe-
Q 001349 877 KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS-----------KYPKCLALV- 944 (1094)
Q Consensus 877 gtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~-----------~~v~~l~~s- 944 (1094)
..|-|.|+..+.. +..-....+....+|..+.++... ...+++|+.. ..|.-..|-
T Consensus 48 ~~vvIiDl~~~~~-----------~~rrpi~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis 115 (494)
T 1bpo_A 48 AQVVIIDMNDPSN-----------PIRRPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS 115 (494)
T ss_dssp CEEEEEETTSTTS-----------CEEEECCCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEE
T ss_pred CeEEEEECCCCCc-----------ceecccccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecC
Confidence 3677777766431 221122233444778887777765 6777888753 344445553
Q ss_pred CCEEEEEEcCCeEEEEECCC-CceeEEeccceeecCCCCCeEEEEEeCCccEEEEEEC---CC---CEEEEEECCCCeEE
Q 001349 945 QGKVYCGCQDGAIQEIDLAT-GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSL---DG---AAVKMWSTSNYNMV 1017 (1094)
Q Consensus 945 ~~~l~sgs~Dg~I~iwDl~~-~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~---Dg---~~I~iwd~~~~~~~ 1017 (1094)
+..|+.. .+..|+-|++.. ..+...+..+..+. ...|.....+++..+++..+. ++ +.+.+|....+..
T Consensus 116 ~~~l~lV-T~taVyHWsi~~~s~P~kvFdR~~~L~--~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s- 191 (494)
T 1bpo_A 116 LNTVALV-TDNAVYHWSMEGESQPVKMFDRHSSLA--GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS- 191 (494)
T ss_dssp TTEEEEE-CSSEEEEEESSSSCCCEEEEECCGGGT--TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-
T ss_pred CCeEEEE-cCCeeEEecccCCCCchhheecchhcc--cceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-
Confidence 4444444 467899999974 34555555544443 356777777888887765532 21 3788999876543
Q ss_pred EEec-CCCCEEEEEEeCC-----EEEEEEc---CCeEEEEECCCC--------cEEEEecc---cCCcceEEEEEcCCCC
Q 001349 1018 GSLP-TLSEVRAMVVSSE-----LVYLGCK---GGTVEIWDQKRQ--------IRIETLQT---GTSGKVQCMALDDNEE 1077 (1094)
Q Consensus 1018 ~~~~-~~~~v~~l~~spd-----~l~sgs~---dg~I~vwd~~t~--------~~~~~l~~---~h~~~I~~l~~Spdg~ 1077 (1094)
+.+. |......+.+..+ .+..+.. .+.++|-++... +....+.. .-.+...++..|+...
T Consensus 192 Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg 271 (494)
T 1bpo_A 192 QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD 271 (494)
T ss_dssp EEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT
T ss_pred chheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCC
Confidence 3333 3333444444433 3333433 378999998543 11112111 2244677889999999
Q ss_pred EEEEEeCCCcEEEEeCC
Q 001349 1078 FLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1078 ~L~sgs~DG~I~iWdls 1094 (1094)
.++.-+.-|.|++||+.
T Consensus 272 viyviTK~G~i~lyDle 288 (494)
T 1bpo_A 272 VVFLITKYGYIHLYDLE 288 (494)
T ss_dssp EEEEEETTSEEEEEETT
T ss_pred EEEEEecCceEEEEecc
Confidence 99999999999999974
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=93.51 E-value=1.4 Score=51.57 Aligned_cols=153 Identities=10% Similarity=0.052 Sum_probs=91.0
Q ss_pred CceEEEEeC---CEEEEEEcC-CeEEEEECCCCceeEEeccceeecCCCCCeEEEEE-------eCCccEEEEEECCC--
Q 001349 937 YPKCLALVQ---GKVYCGCQD-GAIQEIDLATGTFATIQTGHRKLLGKANPVHALQV-------HNGLVYTASTSLDG-- 1003 (1094)
Q Consensus 937 ~v~~l~~s~---~~l~sgs~D-g~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~f-------s~~~~~las~s~Dg-- 1003 (1094)
....|+++| +.|+++..+ +.|++.|+.++......... .........++| ++++.++......+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~---~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~ 216 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNIN---TIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK 216 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCT---TSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccC---ccccCCCcEEEEeecccccCCCCCEEEEEeCCCCC
Confidence 356777774 346666553 67999999887765433211 112235889999 98887555554443
Q ss_pred ----CEEEEEECCC-CeEE-----EEecCCCCEEEEEEeCC--E-EEEEEcCCeEEEEECC-------CCcE--------
Q 001349 1004 ----AAVKMWSTSN-YNMV-----GSLPTLSEVRAMVVSSE--L-VYLGCKGGTVEIWDQK-------RQIR-------- 1055 (1094)
Q Consensus 1004 ----~~I~iwd~~~-~~~~-----~~~~~~~~v~~l~~spd--~-l~sgs~dg~I~vwd~~-------t~~~-------- 1055 (1094)
..|.+++... +... ..+........++++|+ . +++-..++.|+.+|+. ++..
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~ 296 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN 296 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred cccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence 1366665433 1211 22221223456788884 4 4455577889999987 5543
Q ss_pred ---EEE-ecccCCcceEEEEEcCCCCEEEEE-eCCCcEEEEe
Q 001349 1056 ---IET-LQTGTSGKVQCMALDDNEEFLVIG-TSDGRIQAWG 1092 (1094)
Q Consensus 1056 ---~~~-l~~~h~~~I~~l~~Spdg~~L~sg-s~DG~I~iWd 1092 (1094)
... +..+.......++|+|+|++|+.+ +..+.|+.++
T Consensus 297 ~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid 338 (496)
T 3kya_A 297 PNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSD 338 (496)
T ss_dssp TTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEe
Confidence 112 222333457899999999965544 4566777754
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=93.24 E-value=2.1 Score=45.65 Aligned_cols=194 Identities=13% Similarity=0.130 Sum_probs=116.6
Q ss_pred CCcHHHHHHHHhcC----hHHHHHHHHhcCCChHHHHHhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcc
Q 001349 356 ESDVERIVALFKKG----LLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEE 431 (1094)
Q Consensus 356 ~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~ 431 (1094)
+..++.|+..|+.. ...|+..|..+.. -+.+++|+..|...... .+.+|+..|.++-...
T Consensus 22 ~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-------~~~~~~L~~~l~d~~~~-------vR~~A~~aL~~l~~~~-- 85 (280)
T 1oyz_A 22 KLNDDELFRLLDDHNSLKRISSARVLQLRGG-------QDAVRLAIEFCSDKNYI-------RRDIGAFILGQIKICK-- 85 (280)
T ss_dssp TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------HHHHHHHHHHHTCSSHH-------HHHHHHHHHHHSCCCT--
T ss_pred HhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-------chHHHHHHHHHcCCCHH-------HHHHHHHHHHHhcccc--
Confidence 34678888888776 5677778887762 12448888888754311 2455666666541100
Q ss_pred cccccchhhhccchhHHHHHH-hhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHH
Q 001349 432 SIVSSIANTIVSSKVFESVIS-SLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCF 510 (1094)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~l~~-~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 510 (1094)
. . -...++.|.+ .+...+...|..|+..|......+..+ ....++.++.++...+...|..++..
T Consensus 86 ----~---~--~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l~d~~~~vR~~a~~a 151 (280)
T 1oyz_A 86 ----K---C--EDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDKSTNVRRATAFA 151 (280)
T ss_dssp ----T---T--HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred ----c---c--chHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 0 0 0012234442 345677888888888877654322211 12234566666666666666666666
Q ss_pred HHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhc
Q 001349 511 LSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRN 590 (1094)
Q Consensus 511 l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~ 590 (1094)
|..+ ... ..+..|...++...++-+..++..|.++.. .-+++++.|+..|.+
T Consensus 152 L~~~----------------~~~---~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------~~~~~~~~L~~~l~d 203 (280)
T 1oyz_A 152 ISVI----------------NDK---ATIPLLINLLKDPNGDVRNWAAFAININKY---------DNSDIRDCFVEMLQD 203 (280)
T ss_dssp HHTC----------------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTC---------CCHHHHHHHHHHTTC
T ss_pred HHhc----------------CCH---HHHHHHHHHHcCCCHHHHHHHHHHHHhhcc---------CcHHHHHHHHHHhcC
Confidence 5433 111 134446677766666666677777877631 136899999999976
Q ss_pred CCChHHHHHHHHHHHhcc
Q 001349 591 SDYPAAQLAAAKTIVSLQ 608 (1094)
Q Consensus 591 ~~~~~~~~~~~~~~~~l~ 608 (1094)
.+ ..++..|+.+|..++
T Consensus 204 ~~-~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 204 KN-EEVRIEAIIGLSYRK 220 (280)
T ss_dssp SC-HHHHHHHHHHHHHTT
T ss_pred CC-HHHHHHHHHHHHHhC
Confidence 54 678999999999886
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.74 E-value=8.9 Score=42.25 Aligned_cols=93 Identities=6% Similarity=-0.035 Sum_probs=46.5
Q ss_pred ccCcEEEEeeCC-CCeEEEeCCc---ceeec---c-cCCCcEEEEEEeCCEEEEEEC-C---------CeEEEEecCCCc
Q 001349 783 FEMVKVLSNGHD-SSADFWNHRE---LVHVD---S-SENGKVLSIACFRDKIFSGHS-D---------GTIKVWTGRGSI 844 (1094)
Q Consensus 783 ~d~~~l~s~s~d-g~I~vWd~~~---~~~~~---~-~h~~~V~~l~fspd~LaSgs~-D---------g~I~vWd~~t~~ 844 (1094)
.++..++.||.+ ..+.++|... .-..+ . .....-.++.+...+++.|+. + ..+.+||..+..
T Consensus 18 ~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 18 DNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp ETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred ECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 356666666654 4677777642 11111 1 111122233333335555554 2 468899999886
Q ss_pred ceeEEEecccCCCeEEEEEecCCCEEEEEeCC
Q 001349 845 LHLIQQIREHTKAVTGLAILQSGEMLYSGSLD 876 (1094)
Q Consensus 845 ~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D 876 (1094)
+..+.........-.++.. .++++++.|+.+
T Consensus 98 W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~ 128 (357)
T 2uvk_A 98 WVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVN 128 (357)
T ss_dssp EEECSCCCSSCCSSEEEEE-ETTEEEEEECCC
T ss_pred EEECCCCCCcccccceEEE-ECCEEEEEeCcC
Confidence 6554443311111112222 477788888765
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=92.70 E-value=5.1 Score=49.16 Aligned_cols=196 Identities=10% Similarity=0.127 Sum_probs=96.5
Q ss_pred CEEEEEECC----CeEEEEecCCCcceeEE-Eec----ccCCCeEEEEEec-CCCEEEEEeCCC------cEEEEECCCC
Q 001349 824 DKIFSGHSD----GTIKVWTGRGSILHLIQ-QIR----EHTKAVTGLAILQ-SGEMLYSGSLDK------TARVWSIGNE 887 (1094)
Q Consensus 824 d~LaSgs~D----g~I~vWd~~t~~~~~~~-~l~----~H~~~V~sv~fsp-dg~~LaSgs~Dg------tI~vWdi~~~ 887 (1094)
..++.|+.+ ..+.+||..++.+..+. .+. .....-.+++..+ ++.+++.||.++ .+.+||..++
T Consensus 399 ~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~ 478 (695)
T 2zwa_A 399 DVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTR 478 (695)
T ss_dssp CEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTT
T ss_pred EEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCC
Confidence 366666643 46888999988766655 311 1111112333333 777777777543 4778888876
Q ss_pred ceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCC--eEEEEECCCC
Q 001349 888 EIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDG--AIQEIDLATG 965 (1094)
Q Consensus 888 ~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg--~I~iwDl~~~ 965 (1094)
+...+.... .+-... ..+...+++. ++.|+.++ .+.+||+.++
T Consensus 479 ~W~~~~~~p--~~R~~h-----~~~~~~~~~i----------------------------yv~GG~~~~~~v~~yd~~t~ 523 (695)
T 2zwa_A 479 EWSMIKSLS--HTRFRH-----SACSLPDGNV----------------------------LILGGVTEGPAMLLYNVTEE 523 (695)
T ss_dssp EEEECCCCS--BCCBSC-----EEEECTTSCE----------------------------EEECCBCSSCSEEEEETTTT
T ss_pred cEEECCCCC--CCcccc-----eEEEEcCCEE----------------------------EEECCCCCCCCEEEEECCCC
Confidence 543332111 110000 0011112322 33343333 6899999988
Q ss_pred ceeEEeccceeecCCCCCeEEEEEeCC-ccEEEEEEC--CC----CEEEEEECCCCe--------EEEEec--CCCCEEE
Q 001349 966 TFATIQTGHRKLLGKANPVHALQVHNG-LVYTASTSL--DG----AAVKMWSTSNYN--------MVGSLP--TLSEVRA 1028 (1094)
Q Consensus 966 ~~~~~~~~~~~~~~h~~~V~sl~fs~~-~~~las~s~--Dg----~~I~iwd~~~~~--------~~~~~~--~~~~v~~ 1028 (1094)
......... ...........+.+..+ +.+.+.|+. ++ ..+.+||+.+.. .+.... .......
T Consensus 524 ~W~~~~~~g-~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~ 602 (695)
T 2zwa_A 524 IFKDVTPKD-EFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQI 602 (695)
T ss_dssp EEEECCCSS-GGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEE
T ss_pred ceEEccCCC-CCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceE
Confidence 765332100 01101111123444543 444444443 11 368999988765 122211 1222344
Q ss_pred EEEeCC-EEEEEEc--------CCeEEEEECCCCcE
Q 001349 1029 MVVSSE-LVYLGCK--------GGTVEIWDQKRQIR 1055 (1094)
Q Consensus 1029 l~~spd-~l~sgs~--------dg~I~vwd~~t~~~ 1055 (1094)
+.+..+ .++.|+. ...|.+||+.+.+-
T Consensus 603 ~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W 638 (695)
T 2zwa_A 603 KYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETL 638 (695)
T ss_dssp EEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred EEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeE
Confidence 455524 5555653 35699999988753
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.61 E-value=1.2 Score=49.30 Aligned_cols=123 Identities=12% Similarity=0.090 Sum_probs=69.4
Q ss_pred CEEEEEECCCeEEEEecCCCcceeEEEeccc-CCCeEEEEEe--cCCCEEEEE--eCCCcEEEEECCCCceEEEEecccC
Q 001349 824 DKIFSGHSDGTIKVWTGRGSILHLIQQIREH-TKAVTGLAIL--QSGEMLYSG--SLDKTARVWSIGNEEIHCVQVHDIK 898 (1094)
Q Consensus 824 d~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H-~~~V~sv~fs--pdg~~LaSg--s~DgtI~vWdi~~~~~~~~~~~~~~ 898 (1094)
+.++.++.||.|.-.|..+| +..++++.. ..++....-. +.+..++.+ +.||.+..++..+|..+..... .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG--~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~--~ 86 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNG--HIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSI--R 86 (339)
T ss_dssp EEEEEEETTSCEEEEETTTT--EEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEH--H
T ss_pred CEEEEEeCCCeEEEEECCCC--cEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecc--c
Confidence 37899999999999999999 777777643 1222221100 112234433 5899999999988743221111 1
Q ss_pred ccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEec
Q 001349 899 DQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQT 972 (1094)
Q Consensus 899 ~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~ 972 (1094)
..+.. ++ +.-++.-++ .+.. -...++.+++|+.+|.+...|+.+|+.+..+.
T Consensus 87 ~lv~~---SP----~~~~~~pvv----------~~~~-----~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 87 QLVST---SP----LHLKTNIVV----------NDSG-----KIVEDEKVYTGSMRTIMYTINMLNGEIISAFG 138 (339)
T ss_dssp HHHTT---CS----EEEECC-------------------------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred cceec---cc----cccCCCcee----------eccc-----ccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 11100 00 000111000 0000 00024568999999999999999999987654
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=92.36 E-value=16 Score=40.44 Aligned_cols=251 Identities=13% Similarity=0.107 Sum_probs=119.2
Q ss_pred cCCCcEEEEEEeCC-EEEEEEC-CCeEEEEecCCCcceeEEEe----cccCCCeEEEEEecC---CCEEEEE-e--CCCc
Q 001349 811 SENGKVLSIACFRD-KIFSGHS-DGTIKVWTGRGSILHLIQQI----REHTKAVTGLAILQS---GEMLYSG-S--LDKT 878 (1094)
Q Consensus 811 ~h~~~V~~l~fspd-~LaSgs~-Dg~I~vWd~~t~~~~~~~~l----~~H~~~V~sv~fspd---g~~LaSg-s--~Dgt 878 (1094)
..-...+.|+|.|| .++.+.. .|.|++++..++....+..+ ....+....|+|+|+ +..|+.. + .++.
T Consensus 29 ~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 29 TGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred cCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 33456789999997 4555555 89999998766643333333 233567899999995 3444432 2 3445
Q ss_pred EEEEECCCC-----c---eEEE-EecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEE
Q 001349 879 ARVWSIGNE-----E---IHCV-QVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVY 949 (1094)
Q Consensus 879 I~vWdi~~~-----~---~~~~-~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~ 949 (1094)
|.-|....+ . .+.+ ..... . -......+.|.|||...+.....+... .. ...
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~-~----~~H~g~~l~fgpDG~Lyvt~Gd~~~~~--~~-qd~----------- 169 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPK-G----VIHNGGRIAFGPDKMLYAGTGESGDTG--LS-QDR----------- 169 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECC-C----SSCCCCCEEECTTSCEEEECBCTTCGG--GT-TCT-----------
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCC-C----CCccCccccCCCCCCEEEEECCCCCCc--cc-cCC-----------
Confidence 655665542 1 1111 11110 0 011223456888886544332221100 00 000
Q ss_pred EEEcCCeEEEEECCCCceeE--Eeccc-eeecCCCCCeEEEEEeCCccEEEEEE-CCC-CEEEEEEC--------CCC--
Q 001349 950 CGCQDGAIQEIDLATGTFAT--IQTGH-RKLLGKANPVHALQVHNGLVYTASTS-LDG-AAVKMWST--------SNY-- 1014 (1094)
Q Consensus 950 sgs~Dg~I~iwDl~~~~~~~--~~~~~-~~~~~h~~~V~sl~fs~~~~~las~s-~Dg-~~I~iwd~--------~~~-- 1014 (1094)
....|.|.-++... +... .+... .--.+|. ....++|++++.+.++-. .++ ..|.+..- ..+
T Consensus 170 -~~~~G~IlRi~~dG-~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~ 246 (347)
T 3das_A 170 -KSLGGKILRMTPDG-EPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKG 246 (347)
T ss_dssp -TCSTTCEEEECTTS-SBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSC
T ss_pred -CCCCCEEEEEeCCC-CccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCC
Confidence 00123333333321 1000 00000 0112333 345677877665544432 221 02222210 000
Q ss_pred ------eEEEEecCC-CCEEEEEEeCCEEEEEE-cCCeEEEEECCCCcE---EEEecccCCcceEEEEEcCCCCEEEEEe
Q 001349 1015 ------NMVGSLPTL-SEVRAMVVSSELVYLGC-KGGTVEIWDQKRQIR---IETLQTGTSGKVQCMALDDNEEFLVIGT 1083 (1094)
Q Consensus 1015 ------~~~~~~~~~-~~v~~l~~spd~l~sgs-~dg~I~vwd~~t~~~---~~~l~~~h~~~I~~l~~Spdg~~L~sgs 1083 (1094)
.++..+.+. .....++|....++.+. ..+.|....+..... ...+..+..+++.+|+..|||.++++.+
T Consensus 247 ~~~~~~~P~~~~~~~~~ap~G~~~~~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 247 GGSGFHDPVAQWSTDEASPSGIAYAEGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CCTTCCCCSEEECTTTCCEEEEEEETTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCccccCCcEecCCCCCCCcceEEEcCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 122333322 46778888877555554 445666666554432 1233234456899999999998766644
|
| >3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.65 E-value=0.11 Score=57.32 Aligned_cols=62 Identities=11% Similarity=0.288 Sum_probs=48.5
Q ss_pred ceeccCccccccCcEE-cCCccc--ccHHhHHHHHHh-CCCCCCCCCcCCCCCCCCChhHHHHHHHH
Q 001349 163 DFVCPITTHIFDDPVT-LETGQT--YERRAIQEWIER-GNSSCPITRQKLSSTKLPKTNYVLKRLIA 225 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~-~~cGht--fc~~ci~~~~~~-~~~~CP~c~~~~~~~~~~~pN~~l~~~i~ 225 (1094)
.+.|||....|+.|+- ..|.|. |+...+.....+ +.-.||+|.+.+...++. .+..+.++++
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~-ID~~~~~IL~ 314 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLA-ISEFVDDILQ 314 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEE-EBHHHHHHHT
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHee-EcHHHHHHHH
Confidence 5889999999999997 589998 666555554433 345699999999998987 7777776654
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=91.39 E-value=7.7 Score=43.98 Aligned_cols=131 Identities=10% Similarity=0.052 Sum_probs=87.7
Q ss_pred cCCeEEEEECCCCceeEEeccceeecC--CCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCe------------EEE
Q 001349 953 QDGAIQEIDLATGTFATIQTGHRKLLG--KANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN------------MVG 1018 (1094)
Q Consensus 953 ~Dg~I~iwDl~~~~~~~~~~~~~~~~~--h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~------------~~~ 1018 (1094)
.++.||.-++..+.....+. ... .-..|..+..+|+|.+++..+.. .|.|-.+..+. ..+
T Consensus 39 ~~n~iR~~~i~~~~~Yk~L~----~~~~i~f~~i~qlvlSpsG~lLAl~g~~--~V~Vv~LP~~~~~~~~~~~~~~~q~~ 112 (452)
T 3pbp_A 39 QDNIIRWYNVLTDSLYHSLN----FSRHLVLDDTFHVISSTSGDLLCLFNDN--EIFVMEVPWGYSNVEDVSIQDAFQIF 112 (452)
T ss_dssp ETTEEEEEETTTCSSCEEEE----CTTTCCCCTTCEEEECTTSSEEEEECSS--EEEEEECCTTCSCCCCHHHHHTTEEE
T ss_pred ECCEEEEEECCCCCcceEEe----cCcccccCceeEEEECCCCCEEEEecCC--eEEEEEecCccccCccccccccccee
Confidence 45778887877443221111 111 11357789999999999998654 79999887321 122
Q ss_pred Eec-------CCCCEEEEEEeCC-----EEEEEEcCCeEEEEECCCCc--EEEEec--------ccCCcceEEEEEcCCC
Q 001349 1019 SLP-------TLSEVRAMVVSSE-----LVYLGCKGGTVEIWDQKRQI--RIETLQ--------TGTSGKVQCMALDDNE 1076 (1094)
Q Consensus 1019 ~~~-------~~~~v~~l~~spd-----~l~sgs~dg~I~vwd~~t~~--~~~~l~--------~~h~~~I~~l~~Spdg 1076 (1094)
++. ....|..+.|+|- .+++-..|++|++||+.... +. .+. ......|.+++|.+++
T Consensus 113 ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~ 191 (452)
T 3pbp_A 113 HYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDG 191 (452)
T ss_dssp EEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTS
T ss_pred EEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCC
Confidence 333 1467999999995 79999999999999997522 22 332 1122478999999988
Q ss_pred CEEEEEe--CCCcEEE
Q 001349 1077 EFLVIGT--SDGRIQA 1090 (1094)
Q Consensus 1077 ~~L~sgs--~DG~I~i 1090 (1094)
-.|...+ .+|-|+-
T Consensus 192 lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 192 LTLYCLNTTEGGDIFA 207 (452)
T ss_dssp SCEEEEECTTSCEEEE
T ss_pred cEEEEEecCCCCCEEE
Confidence 7777755 7787764
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=91.27 E-value=6.8 Score=46.39 Aligned_cols=296 Identities=12% Similarity=0.058 Sum_probs=155.0
Q ss_pred HHHHHHHHHhhhccccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhcc--CCchHHHHHHHHHHHhhcc
Q 001349 266 ITELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFN--SVDPRVLEATIFLLSELGS 343 (1094)
Q Consensus 266 ~~~l~~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~--s~~~~v~~~av~~L~~l~s 343 (1094)
...+...+..+.+.+. ..+..|+..+..++...+.. ...+.+++.|.. +.+..++..+...|.++..
T Consensus 9 ~~~i~~l~~~l~s~~~-~~R~~A~~~l~~i~~~~~~~----------~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~ 77 (588)
T 1b3u_A 9 LYPIAVLIDELRNEDV-QLRLNSIKKLSTIALALGVE----------RTRSELLPFLTDTIYDEDEVLLALAEQLGTFTT 77 (588)
T ss_dssp SHHHHHHHHHTTCSCH-HHHHHHHHTHHHHHHHSCHH----------HHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSG
T ss_pred cCcHHHHHHHhhcccH-HHHHHHHHhHHHHHHHhCHH----------HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHh
Confidence 3456667777765443 43566666666665433221 112223333322 4567888888888887743
Q ss_pred cc--cchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCC-ChHHHHHhhhhHHHHHHHHhccccccccccCchh
Q 001349 344 RD--KSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRP-STRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKS 416 (1094)
Q Consensus 344 ~~--~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~-~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~ 416 (1094)
.- .... ..-++.|..++... +..|...|..+.. .+.+.. ...+-+++..+..+. +. ..+.
T Consensus 78 ~~~~~~~~------~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~-~~~l~~~l~~l~~~~-~~-----~~R~ 144 (588)
T 1b3u_A 78 LVGGPEYV------HCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDL-EAHFVPLVKRLAGGD-WF-----TSRT 144 (588)
T ss_dssp GGTSGGGG------GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHH-HHTHHHHHHHHHTCS-SH-----HHHH
T ss_pred ccCcHHHH------HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHhcCC-Cc-----HHHH
Confidence 31 1111 11224444444433 5566677777633 222211 112223333333222 11 1245
Q ss_pred hHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHH
Q 001349 417 VSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESF 496 (1094)
Q Consensus 417 aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~ 496 (1094)
+|..++..+...... ......++.+...+...+.+.|..|+..|......-+.- .+ ...-++.++.++
T Consensus 145 ~a~~~l~~~~~~~~~---------~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~-~~--~~~l~~~l~~~~ 212 (588)
T 1b3u_A 145 SACGLFSVCYPRVSS---------AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD-NV--KSEIIPMFSNLA 212 (588)
T ss_dssp HHGGGHHHHTTTSCH---------HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH-HH--HHTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH-hH--HHHHHHHHHHHh
Confidence 555566655433210 112345688888888889999999998887766554321 11 112234555566
Q ss_pred HhcCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCcc
Q 001349 497 MAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIY 576 (1094)
Q Consensus 497 ~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~ 576 (1094)
.......|..|+..|..+...-... .... ..+..+..+++.....-+-.++..|.++--...+ ..|
T Consensus 213 ~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~--------~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~ 278 (588)
T 1b3u_A 213 SDEQDSVRLLAVEACVNIAQLLPQE---DLEA--------LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EIT 278 (588)
T ss_dssp TCSCHHHHTTHHHHHHHHHHHSCHH---HHHH--------HTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHH
T ss_pred cCCcHHHHHHHHHHHHHHHHhCCHH---HHHH--------HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccc
Confidence 6666667777777777665431110 0000 1222333444333333345666666665443222 235
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHHHhcccccc
Q 001349 577 REEAIDTLISCLRNSDYPAAQLAAAKTIVSLQGRFT 612 (1094)
Q Consensus 577 reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~g~~s 612 (1094)
.++.++.++..+... .+.++..|+.+|..++..+.
T Consensus 279 ~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~ 313 (588)
T 1b3u_A 279 KTDLVPAFQNLMKDC-EAEVRAAASHKVKEFCENLS 313 (588)
T ss_dssp HHTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHTSC
T ss_pred hhHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHhC
Confidence 677888888888643 45788899999988776553
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.11 E-value=0.27 Score=54.62 Aligned_cols=111 Identities=15% Similarity=0.132 Sum_probs=72.1
Q ss_pred CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEE---eCCccEEEEE-ECCCCEEEEEECCCCeEEEEec
Q 001349 946 GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQV---HNGLVYTAST-SLDGAAVKMWSTSNYNMVGSLP 1021 (1094)
Q Consensus 946 ~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~f---s~~~~~las~-s~Dg~~I~iwd~~~~~~~~~~~ 1021 (1094)
+.+++++.||.|+-+|..+|+....+... ...++....- ..++..++.. +.|| .|..+|..+|.....+.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~-----~~~p~~~~~~~~~~~~~~~~vv~p~~dG-~l~a~~~~~G~~~~~~~ 84 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE-----NFQPLIEIQEPSRLETYETLIIEPFGDG-NIYYFNAHQGLQKLPLS 84 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG-----GSCCSEECCCSCTTTSSEEEEECCSTTT-EEEEEETTTEEEEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC-----ccCCcEEecCCccccCCcEEEEEECCCC-EEEEEECCCCcEEeeec
Confidence 46899999999999999999988765432 1111111110 0122333332 4565 89999988886555444
Q ss_pred -----CCCCEEE---EEE-------eCCEEEEEEcCCeEEEEECCCCcEEEEeccc
Q 001349 1022 -----TLSEVRA---MVV-------SSELVYLGCKGGTVEIWDQKRQIRIETLQTG 1062 (1094)
Q Consensus 1022 -----~~~~v~~---l~~-------spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~ 1062 (1094)
..+++.. ..+ ..+.+++|+.+|.+...|..+|+.+..+..+
T Consensus 85 ~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 85 IRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp HHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred cccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 2223321 111 3448899999999999999999999999644
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=91.00 E-value=22 Score=39.35 Aligned_cols=94 Identities=10% Similarity=-0.031 Sum_probs=53.9
Q ss_pred cccccCcEEEEeeCCCCeEEEeCCcceeec------ccCCCcEEEEEEeCC-----EEEEEEC----C----CeEEEEec
Q 001349 780 PLAFEMVKVLSNGHDSSADFWNHRELVHVD------SSENGKVLSIACFRD-----KIFSGHS----D----GTIKVWTG 840 (1094)
Q Consensus 780 ~~~~d~~~l~s~s~dg~I~vWd~~~~~~~~------~~h~~~V~~l~fspd-----~LaSgs~----D----g~I~vWd~ 840 (1094)
.+.+++. ++.+..+|.|.+++.... ..+ .........|+|+|+ .|+.+.. + +.|..|+.
T Consensus 35 a~~pdG~-l~V~e~~g~I~~~d~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~ 112 (354)
T 3a9g_A 35 APLGGGR-YLVTERPGRLVLISPSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRL 112 (354)
T ss_dssp EEEETTE-EEEEETTTEEEEECSSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEE
T ss_pred EEcCCCe-EEEEeCCCEEEEEeCCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEE
Confidence 3455676 444556689988874422 211 122456899999985 5555443 3 56777877
Q ss_pred CCC--cc---eeE-EEecc-cCCCeEEEEEecCCCEEEEEeC
Q 001349 841 RGS--IL---HLI-QQIRE-HTKAVTGLAILQSGEMLYSGSL 875 (1094)
Q Consensus 841 ~t~--~~---~~~-~~l~~-H~~~V~sv~fspdg~~LaSgs~ 875 (1094)
..+ .. +.+ ..+.. .......++|.|||.+.++.+.
T Consensus 113 ~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~ 154 (354)
T 3a9g_A 113 DGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGD 154 (354)
T ss_dssp CSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCC
T ss_pred CCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECC
Confidence 654 11 111 22221 1112467999999987776543
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=90.52 E-value=32 Score=43.03 Aligned_cols=311 Identities=12% Similarity=0.139 Sum_probs=151.8
Q ss_pred hHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcH----H
Q 001349 285 SEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDV----E 360 (1094)
Q Consensus 285 ~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~----~ 360 (1094)
+..+...|..+++.... ..-|.++..+++.+. +.+..+++.++.+|..+.......... ......+ +
T Consensus 107 r~~~a~~i~~ia~~~~~-------~~wp~ll~~L~~~l~-~~~~~~r~~al~~L~~i~~~~~~~~~~-~~~~~~~~~il~ 177 (852)
T 4fdd_A 107 RATVGILITTIASKGEL-------QNWPDLLPKLCSLLD-SEDYNTCEGAFGALQKICEDSAEILDS-DVLDRPLNIMIP 177 (852)
T ss_dssp HHHHHHHHHHHHHHTTT-------TTCTTHHHHHHHHHS-CSSHHHHHHHHHHHHHHHHHHTTHHHH-CSSSSCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCc-------cccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhHHHhch-hhhcchHHHHHH
Confidence 34444445555544321 123445555555543 567888999999988775332211110 0001123 3
Q ss_pred HHHHHHhcC----hHHHHHHHHhcCCChHH-H-HHh-hhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccc
Q 001349 361 RIVALFKKG----LLEAVVLIDLLRPSTRT-L-IEM-DMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESI 433 (1094)
Q Consensus 361 ~L~~lLk~g----~~~Aa~~l~~L~~~~~~-~-~~~-~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~ 433 (1094)
.|+..++.. +..|..+|..+-....+ . ..+ +.++.|+..+..+..+ -+.++...|..|+.......
T Consensus 178 ~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~-------vr~~a~~~L~~l~~~~~~~~ 250 (852)
T 4fdd_A 178 KFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPE-------VRKNVCRALVMLLEVRMDRL 250 (852)
T ss_dssp HHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHH-------HHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHH-------HHHHHHHHHHHHHHhCHHHH
Confidence 334444433 45666677655332221 1 111 3346777665543211 13455556666654332111
Q ss_pred cccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHH----HHH----------hc
Q 001349 434 VSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVME----SFM----------AA 499 (1094)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~----l~~----------~~ 499 (1094)
.+ .-.+.++.++..+...+.+-|..|...+..+++. ..+++++.. .+..++. .+. ..
T Consensus 251 ~~------~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~-~~~~~~~~~--~~~~l~p~ll~~l~~~e~d~~~~~~d 321 (852)
T 4fdd_A 251 LP------HMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQ-PICKDVLVR--HLPKLIPVLVNGMKYSDIDIILLKGD 321 (852)
T ss_dssp GG------GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTS-TTHHHHHTT--THHHHHHHHHHHTSCCHHHHHHHHC-
T ss_pred HH------HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcc-hhHHHHHHH--HHHHHHHHHHHHcCCcHhHHHHhcCC
Confidence 11 1124568888888877777788888777665432 245554322 1222222 220 11
Q ss_pred ------------CCchhHHHHHHHHHHHhc-------------------c---ccchhHHHHHHhhhcCc-------chh
Q 001349 500 ------------SDGERFEIVCFLSELVKL-------------------N---RRTFNEQILHIIKDEGT-------YSS 538 (1094)
Q Consensus 500 ------------~~~~~~~~~~~l~el~~~-------------------~---r~~~~~~~l~~i~~~~~-------~~~ 538 (1094)
.-..|..+...|..|... + .|..+...+..|-+... -..
T Consensus 322 ~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~ 401 (852)
T 4fdd_A 322 VEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPEL 401 (852)
T ss_dssp -----------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHH
T ss_pred cccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 011133333333222221 1 12223333333332211 112
Q ss_pred HHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcccccccCChhh
Q 001349 539 MHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQGRFTTSGKSL 618 (1094)
Q Consensus 539 ~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~g~~s~~g~~~ 618 (1094)
+..++..++...+.=+-.++..|.++.-...+.....|-.+.+..|+..|.+. .+.+|..|+.+|.++.-.....=.||
T Consensus 402 l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~-~~~vr~~a~~aL~~l~~~~~~~l~~~ 480 (852)
T 4fdd_A 402 IPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS-NKRVQEAACSAFATLEEEACTELVPY 480 (852)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHGGGGGGG
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHhhHhhHhH
Confidence 23344444433333344566677776654333345678899999999999765 46889999999999874433322344
Q ss_pred HHH
Q 001349 619 TRA 621 (1094)
Q Consensus 619 ~~~ 621 (1094)
...
T Consensus 481 l~~ 483 (852)
T 4fdd_A 481 LAY 483 (852)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=90.50 E-value=2.8 Score=50.46 Aligned_cols=256 Identities=13% Similarity=0.175 Sum_probs=139.3
Q ss_pred ccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCChHHH----HHhhhhH
Q 001349 323 FNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTL----IEMDMME 394 (1094)
Q Consensus 323 ~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~~~~----~~~~~~~ 394 (1094)
+.+.++.|.+.|+..|..+...++.... ..+.++.|..+|... ...|+.+|+.+.....+. .....++
T Consensus 130 L~d~~~~VRk~A~~al~~i~~~~p~~~~----~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~ 205 (591)
T 2vgl_B 130 LKDEDPYVRKTAAVCVAKLHDINAQMVE----DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNIN 205 (591)
T ss_dssp SSCSCHHHHHHHHHHHHHHHHSSCCCHH----HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHhhChhhcc----cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHH
Confidence 3478899999999999988665553322 123447777777643 567778898886654321 1112235
Q ss_pred HHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhh
Q 001349 395 SLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQ 474 (1094)
Q Consensus 395 ~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~ 474 (1094)
.|+..|...++ -+-+.++..| +... ..... .....++.+...+++.+..-+..|+..+..+..
T Consensus 206 ~Ll~~l~~~~~----------~~q~~il~~l-~~l~--~~~~~----~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~ 268 (591)
T 2vgl_B 206 KLLTALNECTE----------WGQIFILDCL-SNYN--PKDDR----EAQSICERVTPRLSHANSAVVLSAVKVLMKFLE 268 (591)
T ss_dssp HHHHHHHHCCH----------HHHHHHHHHH-HTSC--CCSHH----HHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCC
T ss_pred HHHHcCCCCCc----------hHHHHHHHHH-HHhC--CCChH----HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhh
Confidence 56666554332 1223333322 2221 10000 013456778888888788888888887776543
Q ss_pred c---cCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhccc--------------------cchhHHHHHHhh
Q 001349 475 E---DGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNR--------------------RTFNEQILHIIK 531 (1094)
Q Consensus 475 ~---~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r--------------------~~~~~~~l~~i~ 531 (1094)
. +...-..+.+ ...++++.|+ +.....|..++..|..+..... |..+.++|-.+.
T Consensus 269 ~~~~~~~~~~~~~~-~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~ 346 (591)
T 2vgl_B 269 LLPKDSDYYNMLLK-KLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLA 346 (591)
T ss_dssp SCCBTTBSHHHHHH-HTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTC
T ss_pred ccCCCHHHHHHHHH-HHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHC
Confidence 1 1121111222 2235777665 4566678888888888775321 012334444455
Q ss_pred hcCcc-hhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhc
Q 001349 532 DEGTY-SSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSL 607 (1094)
Q Consensus 532 ~~~~~-~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l 607 (1094)
++..+ ..+.-|+.|++....+-+.-++.-+.++.. ++.-.-+..++.|+..|+... +.+...+..++..+
T Consensus 347 ~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~-----~~~~~~~~~v~~Ll~ll~~~~-~~v~~e~i~~l~~i 417 (591)
T 2vgl_B 347 SQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAI-----KVEQSAERCVSTLLDLIQTKV-NYVVQEAIVVIRDI 417 (591)
T ss_dssp CSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHTCC-HHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-----hChhHHHHHHHHHHHHHcccc-hHHHHHHHHHHHHH
Confidence 55433 355667777776666666666666666554 222223566677776666543 23333344444443
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.42 E-value=5 Score=44.36 Aligned_cols=65 Identities=6% Similarity=0.011 Sum_probs=34.6
Q ss_pred EEEEEEC-CCeEEEEecCC--CcceeEEEecccCCCeEEEEEecCCCEEEEEeC-C---------CcEEEEECCCCceE
Q 001349 825 KIFSGHS-DGTIKVWTGRG--SILHLIQQIREHTKAVTGLAILQSGEMLYSGSL-D---------KTARVWSIGNEEIH 890 (1094)
Q Consensus 825 ~LaSgs~-Dg~I~vWd~~t--~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~-D---------gtI~vWdi~~~~~~ 890 (1094)
+++.|+. ...+.++|..+ ..+..+..+......-.+++. -++.+++.|+. + ..+.+||..+++..
T Consensus 22 iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~ 99 (357)
T 2uvk_A 22 VYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWV 99 (357)
T ss_dssp EEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEE
T ss_pred EEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEE
Confidence 4445543 45788889874 545444433311111112222 25667777765 2 35788888876543
|
| >4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B | Back alignment and structure |
|---|
Probab=89.42 E-value=0.23 Score=54.67 Aligned_cols=63 Identities=13% Similarity=0.314 Sum_probs=49.5
Q ss_pred ceeccCccccccCcEE-cCCccc--ccHHhHHHHHHh-CCCCCCCCCcCCCCCCCCChhHHHHHHHHH
Q 001349 163 DFVCPITTHIFDDPVT-LETGQT--YERRAIQEWIER-GNSSCPITRQKLSSTKLPKTNYVLKRLIAS 226 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~-~~cGht--fc~~ci~~~~~~-~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~ 226 (1094)
.+.|||....|+.|+- ..|.|. |+...+...... +.-.||+|++.+...++. .+..+.+++..
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~-ID~~~~~IL~~ 281 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLI-LDGLFMEILND 281 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEE-EBHHHHHHHTT
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeE-EcHHHHHHHHh
Confidence 6899999999999997 589998 776666554443 345699999999988887 77777776653
|
| >1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=88.98 E-value=0.47 Score=40.34 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=37.7
Q ss_pred ceeccCcccccc-----CcEEc--CCcccccHHhHHHHHHhCCCCCCCCCcCCC
Q 001349 163 DFVCPITTHIFD-----DPVTL--ETGQTYERRAIQEWIERGNSSCPITRQKLS 209 (1094)
Q Consensus 163 ~~~CpIc~~~~~-----dPv~~--~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~ 209 (1094)
.-.|.||.+-.- +|.+. .|+...||.|.+-=...++..||.|+.++.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 357999998632 35554 699999999999877788889999998876
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=88.88 E-value=37 Score=40.43 Aligned_cols=73 Identities=11% Similarity=0.143 Sum_probs=45.4
Q ss_pred HHHHHHHHhhhccccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhccccc
Q 001349 267 TELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDK 346 (1094)
Q Consensus 267 ~~l~~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~ 346 (1094)
+.+-..+.++..+..-..+..|+..+.++++...+.. ..+.+++.+.++| .+.+..|+.+|+.+|.++...+.
T Consensus 120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~------~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV------EDQGFLDSLRDLI-ADSNPMVVANAVAALSEISESHP 192 (591)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH------HHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc------ccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhhCC
Confidence 3334444444444444557788888888887543311 1123455555555 46889999999999999865543
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=88.78 E-value=7 Score=46.27 Aligned_cols=144 Identities=10% Similarity=0.069 Sum_probs=65.0
Q ss_pred HHhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCCh-HHHH
Q 001349 314 VINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPST-RTLI 388 (1094)
Q Consensus 314 v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~-~~~~ 388 (1094)
++..++..+ .+.+..|.+.+...|..+...-......-.-.+.-++.|..+++.. +..|+.+|..+...- .+..
T Consensus 282 l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~ 360 (588)
T 1b3u_A 282 LVPAFQNLM-KDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNT 360 (588)
T ss_dssp HHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHH
T ss_pred HHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHH
Confidence 444444444 3567888999988888775432110000000112236666666554 334444444443211 1111
Q ss_pred HhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHH
Q 001349 389 EMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGI 468 (1094)
Q Consensus 389 ~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 468 (1094)
.-..+|.++..+...... . +.+++..+..+...++. .......+|.|...++..+.+.|..++..
T Consensus 361 ~~~l~p~l~~~l~d~~~~-V------r~~a~~~l~~l~~~~~~--------~~~~~~~lp~l~~~~~d~~~~vr~~~~~~ 425 (588)
T 1b3u_A 361 IEHLLPLFLAQLKDECPE-V------RLNIISNLDCVNEVIGI--------RQLSQSLLPAIVELAEDAKWRVRLAIIEY 425 (588)
T ss_dssp HHHTHHHHHHHHTCSCHH-H------HHHHHTTCHHHHHHSCH--------HHHHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchH-H------HHHHHHHHHHHHHhcCH--------HHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 112337777777643211 1 22333333333221110 00112345666666666666666666555
Q ss_pred HHHHh
Q 001349 469 LLRCM 473 (1094)
Q Consensus 469 l~~~~ 473 (1094)
|-...
T Consensus 426 l~~l~ 430 (588)
T 1b3u_A 426 MPLLA 430 (588)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
|
| >3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.63 E-value=0.33 Score=50.91 Aligned_cols=49 Identities=10% Similarity=0.260 Sum_probs=39.6
Q ss_pred ceeccCccccccCcEEc-CCcccccHHhHHHHHHhC-CCCCCCCCcCCCCC
Q 001349 163 DFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERG-NSSCPITRQKLSST 211 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~-~cGhtfc~~ci~~~~~~~-~~~CP~c~~~~~~~ 211 (1094)
-..|.||.++...-+.- .|+|.|=..|+..|++.. ...||.|+...+..
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 45699999999976654 499999999999999753 44799999876544
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=88.40 E-value=25 Score=37.45 Aligned_cols=67 Identities=15% Similarity=0.043 Sum_probs=39.2
Q ss_pred CcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 001349 814 GKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGN 886 (1094)
Q Consensus 814 ~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~ 886 (1094)
..|..|+......+.-. ||.|..|-..... .+..-......|..|+...+. .++. . ||.|..|-...
T Consensus 24 ~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~G--qlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~ 90 (282)
T 3qhy_B 24 SGVDAIAGGYFHGLALK-GGKVLGWGANLNG--QLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNE 90 (282)
T ss_dssp SSCCEEEECSSEEEEEE-TTEEEEEECCSSS--TTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCT
T ss_pred CCCcEEEeCCCeEEEEE-CCEEEEEeCCCCC--CCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCC
Confidence 46888888777433335 9999999755421 111111123457777765432 3333 4 89999997654
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=88.18 E-value=2.8 Score=51.41 Aligned_cols=208 Identities=13% Similarity=0.082 Sum_probs=116.7
Q ss_pred HHHHHHHHhhhccccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhccc-c
Q 001349 267 TELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSR-D 345 (1094)
Q Consensus 267 ~~l~~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~-~ 345 (1094)
+.+-..+.+|.+. ...+++.|...|..++.+. ..+.. +.+..++.-++.-++...+..|+++|..+|.+|... .
T Consensus 34 ~~i~Pll~~L~S~-~~~~r~~A~~al~~l~~~~-~~~~l---~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g 108 (684)
T 4gmo_A 34 DKILPVLKDLKSP-DAKSRTTAAGAIANIVQDA-KCRKL---LLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEE 108 (684)
T ss_dssp HTTHHHHHHHSSS-CCSHHHHHHHHHHHHTTSH-HHHHH---HHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSC
T ss_pred hhHHHHHHHcCCC-CHHHHHHHHHHHHHHHcCc-HHHHH---HHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcC
Confidence 3445567777654 4466788888888887432 22222 233344444555556678899999999999999755 3
Q ss_pred cchhhhhccCCCcHHHHHHHHhcChHHHHHHHHhcCCCh-----HHHHH-hhhhHH---HHHHHHhccccccccccCchh
Q 001349 346 KSVIHTLTRVESDVERIVALFKKGLLEAVVLIDLLRPST-----RTLIE-MDMMES---LMTVIKKKEEDFLKMCLKPKS 416 (1094)
Q Consensus 346 ~~~~~~i~~~~~~~~~L~~lLk~g~~~Aa~~l~~L~~~~-----~~~~~-~~~~~~---Ll~~l~~~~~~~~~~~~~~~~ 416 (1094)
..++..+.+.+ .+++|..+|++.. ..+..+.+.. ..... .+..+. +|..|++++
T Consensus 109 ~d~~~~l~~~~-il~~L~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s------------ 171 (684)
T 4gmo_A 109 ADFCVHLYRLD-VLTAIEHAAKAVL----ETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALAR------------ 171 (684)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH----HHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred chHHHHHHHcC-hHHHHHHHHHhhH----HHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCC------------
Confidence 56777777544 7788888887531 1122221111 11111 111122 222222222
Q ss_pred hHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhccc---HHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHH
Q 001349 417 VSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEW---AEERIAAVGILLRCMQEDGKCRNSIADKAELAPVM 493 (1094)
Q Consensus 417 aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~ 493 (1094)
.....+++..++++.|+..|...+ .+-+..|+..|..+...+...-..+.+.+....+.
T Consensus 172 ------------------~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~ 233 (684)
T 4gmo_A 172 ------------------DEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYD 233 (684)
T ss_dssp ------------------HHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHH
T ss_pred ------------------HHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHH
Confidence 223345667799999999986443 45677777777777666666666666655443332
Q ss_pred HHH--HhcCCchhHHHHHHHHHH
Q 001349 494 ESF--MAASDGERFEIVCFLSEL 514 (1094)
Q Consensus 494 ~l~--~~~~~~~~~~~~~~l~el 514 (1094)
-++ ...++..|..+...|..+
T Consensus 234 ~ll~~~~~~~~~~~la~giL~Ni 256 (684)
T 4gmo_A 234 VLLKLATGTDPRAVMACGVLHNV 256 (684)
T ss_dssp HHHHHHHSSCTTHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHhH
Confidence 232 234444455444444443
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=87.12 E-value=29 Score=39.28 Aligned_cols=277 Identities=11% Similarity=0.056 Sum_probs=140.0
Q ss_pred hHHHhhhHhhhccCC-chHHHHHHHHHHHhhcccc-cchhhhhccCCCcHHHHHHHHhcC------hHHHHHHHHhcCC-
Q 001349 312 PAVINGFVEILFNSV-DPRVLEATIFLLSELGSRD-KSVIHTLTRVESDVERIVALFKKG------LLEAVVLIDLLRP- 382 (1094)
Q Consensus 312 ~~v~~~~v~~L~~s~-~~~v~~~av~~L~~l~s~~-~~~~~~i~~~~~~~~~L~~lLk~g------~~~Aa~~l~~L~~- 382 (1094)
|.++..++..+..+. +..+.+.++.+|..+...- ........ +.-++.|+..|+.. +..|..++..+-.
T Consensus 127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~ 204 (462)
T 1ibr_B 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 204 (462)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH--HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 445555666655433 7888999999999885432 11111111 11235566666544 2456666665432
Q ss_pred ChHHHHHhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHH
Q 001349 383 STRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEER 462 (1094)
Q Consensus 383 ~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 462 (1094)
...+...-...+.++..|.....+.. -.-+.+++..+..+...+.... ...+....++.++..++..+.+-|
T Consensus 205 ~~~~~~~~~~~~~l~~~l~~~~~~~~---~~vr~~~~~~l~~l~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~v~ 276 (462)
T 1ibr_B 205 TKANFDKESERHFIMQVVCEATQCPD---TRVRVAALQNLVKIMSLYYQYM-----ETYMGPALFAITIEAMKSDIDEVA 276 (462)
T ss_dssp THHHHTSHHHHHHHHHHHHHHTTCSS---HHHHHHHHHHHHHHHHHCGGGC-----TTTTTTTHHHHHHHHHHCSSHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcCCchHHH
Confidence 22222111111223444432211100 0113456666666654332111 011111556788888887788888
Q ss_pred HHHHHHHHHHhhcc------------------CcchhhHhhh--cCchhHHHHHHhc-------CCchhHHHHHHHHHHH
Q 001349 463 IAAVGILLRCMQED------------------GKCRNSIADK--AELAPVMESFMAA-------SDGERFEIVCFLSELV 515 (1094)
Q Consensus 463 ~~~~~~l~~~~~~~------------------~~~r~~~~~~--~~~~~~~~l~~~~-------~~~~~~~~~~~l~el~ 515 (1094)
..|...+..++... ..+..++... .-++.++..+... +...|..|...|..|.
T Consensus 277 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~ 356 (462)
T 1ibr_B 277 LQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLA 356 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHH
Confidence 88888877665542 1222222110 0112222333221 1244555666666654
Q ss_pred hccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChH
Q 001349 516 KLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPA 595 (1094)
Q Consensus 516 ~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~~~~ 595 (1094)
..-... ++. ..+..+..+++......+--+...|..+.--.++.....|-.+.+..|+..|.+.. +.
T Consensus 357 ~~~~~~----~~~--------~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~-~~ 423 (462)
T 1ibr_B 357 TCCEDD----IVP--------HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPS-VV 423 (462)
T ss_dssp HHTTTT----HHH--------HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSC-HH
T ss_pred HhccHH----HHH--------HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCC-HH
Confidence 431111 111 12333444555555555555666666655322223344556789999999997654 78
Q ss_pred HHHHHHHHHHhccccc
Q 001349 596 AQLAAAKTIVSLQGRF 611 (1094)
Q Consensus 596 ~~~~~~~~~~~l~g~~ 611 (1094)
++..|+.+|..++..+
T Consensus 424 Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 424 VRDTAAWTVGRICELL 439 (462)
T ss_dssp HHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999987554
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=86.56 E-value=43 Score=36.92 Aligned_cols=97 Identities=10% Similarity=0.052 Sum_probs=51.5
Q ss_pred ccccccCcEEEEeeCCCCeEEEeCCccee--------ecccCCCcEEEEEEeCC-----EEEEEE-C-------CCeEEE
Q 001349 779 SPLAFEMVKVLSNGHDSSADFWNHRELVH--------VDSSENGKVLSIACFRD-----KIFSGH-S-------DGTIKV 837 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~dg~I~vWd~~~~~~--------~~~~h~~~V~~l~fspd-----~LaSgs-~-------Dg~I~v 837 (1094)
..+.+++++++.+...|.|++++...... +.....+....++|+|+ .|+... . ...|..
T Consensus 23 i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r 102 (353)
T 2g8s_A 23 LAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGY 102 (353)
T ss_dssp EEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEE
T ss_pred EEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEE
Confidence 34556777344555678998887542211 11223456789999983 444332 2 235666
Q ss_pred EecCCC--cceeEE----Eecc---cCCCeEEEEEecCCCEEEEEeC
Q 001349 838 WTGRGS--ILHLIQ----QIRE---HTKAVTGLAILQSGEMLYSGSL 875 (1094)
Q Consensus 838 Wd~~t~--~~~~~~----~l~~---H~~~V~sv~fspdg~~LaSgs~ 875 (1094)
|+...+ ...... .+.. ....-..++|.|||.+.++.+.
T Consensus 103 ~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd 149 (353)
T 2g8s_A 103 GRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGE 149 (353)
T ss_dssp EEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECC
T ss_pred EEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECC
Confidence 666432 111111 1211 1112357999999966665543
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=86.25 E-value=15 Score=45.97 Aligned_cols=95 Identities=12% Similarity=0.083 Sum_probs=60.7
Q ss_pred hhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCc--chhhHhhhcCchhH
Q 001349 415 KSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGK--CRNSIADKAELAPV 492 (1094)
Q Consensus 415 ~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~--~r~~~~~~~~~~~~ 492 (1094)
+.+|+..+.++..+.+.. ..-.-...++.|+..+...+.+-|..|+..|.+.....+. ...++. .-++.+
T Consensus 376 R~aa~~alg~i~~~~~~~------~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~--~ll~~L 447 (852)
T 4fdd_A 376 KESGILVLGAIAEGCMQG------MIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLK--PLMTEL 447 (852)
T ss_dssp HHHHHHHHHHTTTTTHHH------HGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHH--HHHHHH
T ss_pred HHHHHHHHHHHHhcchHH------HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHH--HHHHHH
Confidence 678888898886655321 1113356779999999999999999888887665443211 111111 233456
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHhc
Q 001349 493 MESFMAASDGERFEIVCFLSELVKL 517 (1094)
Q Consensus 493 ~~l~~~~~~~~~~~~~~~l~el~~~ 517 (1094)
+..+...+.+.|..|...|..+...
T Consensus 448 ~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 448 LKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 6666666667777887777777543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=86.17 E-value=27 Score=45.64 Aligned_cols=180 Identities=10% Similarity=0.161 Sum_probs=102.5
Q ss_pred EEEeeCCCeEEEEEeCCeEEEEcC-----------CCCceEEEEeCCEEEEEEcCCeEEEEECCCC-ceeEEeccceeec
Q 001349 911 LCFIPQGAGIKVHLRNGKTKLLNS-----------SKYPKCLALVQGKVYCGCQDGAIQEIDLATG-TFATIQTGHRKLL 978 (1094)
Q Consensus 911 ~~fspdg~~l~~~~~~g~i~l~~~-----------~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~-~~~~~~~~~~~~~ 978 (1094)
...+|..+.++... ..++++|+. +..|.-..|-....+.--.+..|..|++... .+...+..+..+.
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~ 149 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLA 149 (1630)
T ss_pred hccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEcCCeEEEeccCCCCccHHHHhcchhcc
Confidence 33677777776665 677888874 3445555665433333334678999999642 3333343333333
Q ss_pred CCCCCeEEEEEeCCccEEEEEEC---CC---CEEEEEECCCCeEEEEec-CCCCEEEEEEeCC----EEEE-EE---cCC
Q 001349 979 GKANPVHALQVHNGLVYTASTSL---DG---AAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE----LVYL-GC---KGG 1043 (1094)
Q Consensus 979 ~h~~~V~sl~fs~~~~~las~s~---Dg---~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd----~l~s-gs---~dg 1043 (1094)
...|.....+++..+++..+. +| |.+.+|+...+.. +.+. |......+.+..+ .+++ +. ..+
T Consensus 150 --~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~ 226 (1630)
T 1xi4_A 150 --GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG 226 (1630)
T ss_pred --cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCc
Confidence 356777777888887765543 11 3788888865432 2222 2222222222211 2222 22 136
Q ss_pred eEEEEECCCC---cE------EEEe-c-ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1044 TVEIWDQKRQ---IR------IETL-Q-TGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1044 ~I~vwd~~t~---~~------~~~l-~-~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
.++|-++... .+ +..+ . ..-.+...++..|+....+...+.-|.|+++|+.
T Consensus 227 kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~ 288 (1630)
T 1xi4_A 227 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLE 288 (1630)
T ss_pred eEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecc
Confidence 8888887543 11 1111 0 1123456678888888889999999999999974
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=85.80 E-value=26 Score=35.99 Aligned_cols=99 Identities=9% Similarity=0.026 Sum_probs=58.6
Q ss_pred eEEEEEeCCccEEEEEECCCCEEEEEECCCCeEE------EEe-c-CCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCc
Q 001349 984 VHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMV------GSL-P-TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQI 1054 (1094)
Q Consensus 984 V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~------~~~-~-~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~ 1054 (1094)
...+.|++++.+.++ .|| .|.-++-.+...- ..+ . .-..+..+.+.|+ .|++.. |+.++-+...++.
T Consensus 90 F~a~~fD~~G~LYav--~dG-~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~ 165 (236)
T 1tl2_A 90 FQFLFFDPNGYLYAV--SKD-KLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSN 165 (236)
T ss_dssp CSEEEECTTSCEEEE--ETT-EEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEECCCSST
T ss_pred ceEEEECCCCCEEEe--CCC-EEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEecCCCCCC
Confidence 468889999998888 455 7877775331110 111 1 1256899999999 677777 8886554443221
Q ss_pred ------EEEEecccCCcceEEEEEcCCCCEEEEEeCCCcE
Q 001349 1055 ------RIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRI 1088 (1094)
Q Consensus 1055 ------~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I 1088 (1094)
....+-...-..-.-+.|.++|.+.++. +|.+
T Consensus 166 ~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 166 QDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp TCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred CcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 1112211222245557799998776665 7744
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=85.02 E-value=9.3 Score=43.28 Aligned_cols=91 Identities=10% Similarity=0.151 Sum_probs=62.7
Q ss_pred CCEEEEEECCCCeEEEEecCC-----CCEEEEEEeCC--EEEEEEcCCeEEEEECCCCc------------EEEEeccc-
Q 001349 1003 GAAVKMWSTSNYNMVGSLPTL-----SEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQI------------RIETLQTG- 1062 (1094)
Q Consensus 1003 g~~I~iwd~~~~~~~~~~~~~-----~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~------------~~~~l~~~- 1062 (1094)
|+.||.-++......+.+... ..+..+..+|+ +++.. .+..|.|-.+..+. ..+.+.-+
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~-g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~ 118 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLF-NDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE 118 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEE-CSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEe-cCCeEEEEEecCccccCcccccccccceeEEEcCC
Confidence 458898888754444444422 25788999998 45544 56688888876321 22334322
Q ss_pred ----CCcceEEEEEcCCC---CEEEEEeCCCcEEEEeCC
Q 001349 1063 ----TSGKVQCMALDDNE---EFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1063 ----h~~~I~~l~~Spdg---~~L~sgs~DG~I~iWdls 1094 (1094)
...+|..+.|+|-+ ..|++-..|++|++||++
T Consensus 119 ~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~ 157 (452)
T 3pbp_A 119 EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDIL 157 (452)
T ss_dssp CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETT
T ss_pred cccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcc
Confidence 24679999999954 689999999999999984
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=84.41 E-value=40 Score=34.66 Aligned_cols=160 Identities=13% Similarity=-0.017 Sum_probs=81.9
Q ss_pred EEEEEECCCeEEEEecCCCc---c-eeEEEeccc--CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc-------eEE
Q 001349 825 KIFSGHSDGTIKVWTGRGSI---L-HLIQQIREH--TKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE-------IHC 891 (1094)
Q Consensus 825 ~LaSgs~Dg~I~vWd~~t~~---~-~~~~~l~~H--~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~-------~~~ 891 (1094)
+|+....| +|++=....+. + ....++ ++ =..+..++|+|+|.+.+. .+|.+.-.+..++. -..
T Consensus 6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~ 81 (236)
T 1tl2_A 6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKK 81 (236)
T ss_dssp CEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEE
T ss_pred EEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccE
Confidence 45666666 66555444432 1 011222 22 236779999999986665 66765555543321 011
Q ss_pred EEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC-------------------CCceEEEEeC-CEEEEE
Q 001349 892 VQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS-------------------KYPKCLALVQ-GKVYCG 951 (1094)
Q Consensus 892 ~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~-------------------~~v~~l~~s~-~~l~sg 951 (1094)
+-...... .. .+.|.|+|...++ .+|.+.-++.. +.+..+.+.+ +.|+..
T Consensus 82 IG~~Gw~~-F~-------a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav 151 (236)
T 1tl2_A 82 IGNGGWNQ-FQ-------FLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAV 151 (236)
T ss_dssp EECSCGGG-CS-------EEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEE
T ss_pred eccccccc-ce-------EEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEE
Confidence 11101001 22 3448999998888 56888766652 2456677765 667777
Q ss_pred EcCCeEEEEECCCCceeEEeccceeec-CCCCCeEEEEEeCCccEEEEE
Q 001349 952 CQDGAIQEIDLATGTFATIQTGHRKLL-GKANPVHALQVHNGLVYTAST 999 (1094)
Q Consensus 952 s~Dg~I~iwDl~~~~~~~~~~~~~~~~-~h~~~V~sl~fs~~~~~las~ 999 (1094)
. |+.+.-+...++...........+. +......-+.|.+++.+.+..
T Consensus 152 ~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~ 199 (236)
T 1tl2_A 152 H-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ 199 (236)
T ss_dssp E-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE
T ss_pred e-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe
Confidence 7 8875443333222110000001111 222234446677887766655
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=83.17 E-value=71 Score=36.59 Aligned_cols=61 Identities=15% Similarity=0.170 Sum_probs=39.6
Q ss_pred CcEEEEEEeCC-EEEEEECCC-eEEEEecCCCcceeEEEecc------cCCCeEEEEEecC---CCEEEEEe
Q 001349 814 GKVLSIACFRD-KIFSGHSDG-TIKVWTGRGSILHLIQQIRE------HTKAVTGLAILQS---GEMLYSGS 874 (1094)
Q Consensus 814 ~~V~~l~fspd-~LaSgs~Dg-~I~vWd~~t~~~~~~~~l~~------H~~~V~sv~fspd---g~~LaSgs 874 (1094)
...+.++|.|+ .|+.+...| .|++++..++....+..+.. ..+....|+|+|| +..|+.+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 45679999997 555556665 79988876664344444432 2456789999995 55554443
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=81.61 E-value=72 Score=38.15 Aligned_cols=73 Identities=10% Similarity=0.186 Sum_probs=46.4
Q ss_pred cCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCChHHH-HHh-hhhHHHH
Q 001349 324 NSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTL-IEM-DMMESLM 397 (1094)
Q Consensus 324 ~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~~~~-~~~-~~~~~Ll 397 (1094)
.+.++-|.++|+..|..+...++..... -++.|..+|... ...|..+|+.+...+.+. ... ..+|.|+
T Consensus 152 ~~~~~~VRk~A~~al~~l~~~~p~~v~~------~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~ 225 (618)
T 1w63_A 152 KTSNSYLRKKAALCAVHVIRKVPELMEM------FLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLV 225 (618)
T ss_dssp HSCCHHHHHHHHHHHHHHHHHCGGGGGG------GGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHChHHHHH------HHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 3678999999999999886655544332 234444555432 345566888887765442 222 2348888
Q ss_pred HHHHh
Q 001349 398 TVIKK 402 (1094)
Q Consensus 398 ~~l~~ 402 (1094)
.+|..
T Consensus 226 ~~L~~ 230 (618)
T 1w63_A 226 RILKN 230 (618)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88875
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1094 | ||||
| d1t1ha_ | 78 | g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre | 4e-18 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-13 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-13 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-12 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 9e-10 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-04 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 6e-12 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-10 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-10 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-07 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 6e-12 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 5e-05 | |
| d2c2la2 | 80 | g.44.1.2 (A:225-304) STIP1 homology and U box-cont | 7e-12 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-11 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 5e-11 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 6e-05 | |
| d1jm7a_ | 103 | g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie | 7e-11 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-10 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 9e-09 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-08 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-06 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-10 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-10 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 4e-10 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 6e-10 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 9e-10 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.002 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-09 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-09 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-07 | |
| d1fbva4 | 79 | g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta | 3e-09 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-09 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 9e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 6e-09 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-07 | |
| d1rmda2 | 86 | g.44.1.1 (A:1-86) V(D)J recombination activating p | 9e-09 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-08 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 5e-06 | |
| d1wgma_ | 98 | g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu | 6e-08 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 8e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 7e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-05 | |
| d1bora_ | 56 | g.44.1.1 (A:) Acute promyelocytic leukaemia proto- | 2e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 9e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-04 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 1e-04 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-04 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 1e-04 | |
| d1chca_ | 68 | g.44.1.1 (A:) Immediate early protein, IEEHV {Equi | 8e-04 | |
| d1g25a_ | 65 | g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi | 0.003 |
| >d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: E3 ubiquitin ligase PUB14 species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 77.8 bits (191), Expect = 4e-18
Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 156 GKHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPK 215
G P+ F CPI+ + DPV + TGQTYER +IQ+W++ G+ +CP +++ L L
Sbjct: 1 GSPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGL-T 59
Query: 216 TNYVLKRLIASWQEQN 231
NYVLK LIA W E N
Sbjct: 60 PNYVLKSLIALWCESN 75
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 70.9 bits (172), Expect = 1e-13
Identities = 46/285 (16%), Positives = 87/285 (30%), Gaps = 40/285 (14%)
Query: 836 KVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEI------ 889
K W R + + H VT + ++ S S D T +VW +
Sbjct: 1 KEWIPRPPEKY---ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG 57
Query: 890 HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVY 949
H V DI +++ + + + + + +
Sbjct: 58 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIV 117
Query: 950 CGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMW 1009
+D I+ ++ TG TGHR V ++ + AS S D V++W
Sbjct: 118 SASRDKTIKMWEVQTGYCVKTFTGHR------EWVRMVRPNQDGTLIASCSNDQ-TVRVW 170
Query: 1010 STSNYNMVGSL-----------------------PTLSEVRAMVVSSELVYLGCKGGTVE 1046
+ L T SE + + G + T++
Sbjct: 171 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 230
Query: 1047 IWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAW 1091
+WD + + TL G V+ + +F++ D ++ W
Sbjct: 231 MWDVSTGMCLMTLV-GHDNWVRGVLFHSGGKFILSCADDKTLRVW 274
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 69.8 bits (169), Expect = 3e-13
Identities = 54/329 (16%), Positives = 103/329 (31%), Gaps = 52/329 (15%)
Query: 800 WNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVW---TGRGSILHLIQQIRE 853
W R + S V + + S D TIKVW TG + ++
Sbjct: 3 WIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-----FERTLKG 57
Query: 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCF 913
HT +V ++ SG++L + ++ Q + + + S +
Sbjct: 58 HTDSVQDISFDHSGKLLA--------SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSI 109
Query: 914 IPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGK--------------VYCGCQDGAIQE 959
+P G I R+ K+ + + D ++
Sbjct: 110 MPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 169
Query: 960 IDLATGTFATIQTGHRK--------------LLGKANPVHALQVHNGLVYTASTSLDGAA 1005
+AT HR + +A + + S S D
Sbjct: 170 WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT- 228
Query: 1006 VKMWSTSNYNMVGSLPT-LSEVRAMVVSS--ELVYLGCKGGTVEIWDQKRQIRIETLQTG 1062
+KMW S + +L + VR ++ S + + T+ +WD K + ++TL
Sbjct: 229 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN-A 287
Query: 1063 TSGKVQCMALDDNEEFLVIGTSDGRIQAW 1091
V + ++V G+ D ++ W
Sbjct: 288 HEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 67.1 bits (162), Expect = 2e-12
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 6/97 (6%)
Query: 790 SNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDK--IFSGHSDGTIKVWTGRGSIL 845
S D + W+ + + V + I S D T++VW +
Sbjct: 222 SGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK-- 279
Query: 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVW 882
++ + H VT L ++ + +GS+D+T +VW
Sbjct: 280 RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 59.0 bits (141), Expect = 9e-10
Identities = 21/120 (17%), Positives = 39/120 (32%), Gaps = 5/120 (4%)
Query: 791 NGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQ 850
+ + + + + SG D TIK+W +
Sbjct: 185 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG--MCLMT 242
Query: 851 IREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGN-EEIHCVQVHDIKDQIQNLAVSNS 909
+ H V G+ G+ + S + DKT RVW N + + H+ + +L +
Sbjct: 243 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE--HFVTSLDFHKT 300
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.0 bits (97), Expect = 3e-04
Identities = 38/247 (15%), Positives = 72/247 (29%), Gaps = 71/247 (28%)
Query: 788 VLSNGHDSSADFWNHRELVHVDS----SENGKVLSIACFRDKIFSGHSDGTIKVWTGRGS 843
++S D + W + V + E +++ I S +D T++VW
Sbjct: 116 IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK 175
Query: 844 ILHLIQQIREHTKAVTGLA--------------------ILQSGEMLYSGSLDKTARVWS 883
++REH V ++ + G L SGS DKT ++W
Sbjct: 176 --ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 233
Query: 884 IGN-EEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLA 942
+ + + HD + ++ + +
Sbjct: 234 VSTGMCLMTLVGHD--NWVRGVLFHSG--------------------------------- 258
Query: 943 LVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLD 1002
+ D ++ D H + V +L H Y + S+D
Sbjct: 259 --GKFILSCADDKTLRVWDYKNKRCMKTLNAHE------HFVTSLDFHKTAPYVVTGSVD 310
Query: 1003 GAAVKMW 1009
VK+W
Sbjct: 311 Q-TVKVW 316
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 66.3 bits (160), Expect = 6e-12
Identities = 42/294 (14%), Positives = 89/294 (30%), Gaps = 24/294 (8%)
Query: 813 NGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEML 870
K+ ++ D + S DG + +W + + + I + V A SG +
Sbjct: 55 LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT--NKVHAIPLRSSWVMTCAYAPSGNYV 112
Query: 871 YSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTK 930
G LD ++++ E + ++ L+ + + +
Sbjct: 113 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIE 172
Query: 931 LLNSSKYPKCLALVQGKVYC---------GCQDGAIQEIDLATGTFATIQTGHRKLLGKA 981
+ + G D + + D+ G TGH
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE------ 226
Query: 982 NPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVS----SELVY 1037
+ ++A+ A+ S D ++ ++ VS L+
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 286
Query: 1038 LGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAW 1091
G +WD + R L G +V C+ + D+ + G+ D ++ W
Sbjct: 287 AGYDDFNCNVWDALKADRAGVLA-GHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 61.3 bits (147), Expect = 2e-10
Identities = 32/190 (16%), Positives = 52/190 (27%), Gaps = 43/190 (22%)
Query: 821 CFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTAR 880
SG D + K+W R Q H + + +G +GS D T R
Sbjct: 194 PDTRLFVSGACDASAKLWDVREG--MCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 881 VWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKC 940
++ + N+ + + F G
Sbjct: 252 LF------DLRADQELMTYSHDNIICGITSVSFSKSGR---------------------- 283
Query: 941 LALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS 1000
+ G D D A + GH N V L V + + A+ S
Sbjct: 284 ------LLLAGYDDFNCNVWDALKADRAGVLAGHD------NRVSCLGVTDDGMAVATGS 331
Query: 1001 LDGAAVKMWS 1010
D +K+W+
Sbjct: 332 WDS-FLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 60.5 bits (145), Expect = 4e-10
Identities = 13/87 (14%), Positives = 33/87 (37%), Gaps = 4/87 (4%)
Query: 799 FWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTK 856
+ + + + + S++ + + +G+ D VW + + H
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA--DRAGVLAGHDN 313
Query: 857 AVTGLAILQSGEMLYSGSLDKTARVWS 883
V+ L + G + +GS D ++W+
Sbjct: 314 RVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.1 bits (136), Expect = 5e-09
Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 7/126 (5%)
Query: 789 LSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI 844
+S D+SA W+ R + + +I F + +G D T +++ R
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259
Query: 845 LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGN-EEIHCVQVHDIKDQIQN 903
+ +T ++ +SG +L +G D VW + + HD +++
Sbjct: 260 ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD--NRVSC 317
Query: 904 LAVSNS 909
L V++
Sbjct: 318 LGVTDD 323
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 51.7 bits (122), Expect = 3e-07
Identities = 33/255 (12%), Positives = 64/255 (25%), Gaps = 10/255 (3%)
Query: 845 LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNL 904
+ + +R H + + +L S S D +W + +
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA-IPLRSSWVMTC 103
Query: 905 AVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT 964
A + S G + N KT+ N + C D
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 163
Query: 965 GTFATIQTGHRKLLGK----ANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL 1020
T A + V +L + S + D + K+W +
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA-SAKLWDVREGMCRQTF 222
Query: 1021 PT-LSEVRAMVVS--SELVYLGCKGGTVEI-WDQKRQIRIETLQTGTSGKVQCMALDDNE 1076
S++ A+ G T + + Q + + ++ +
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282
Query: 1077 EFLVIGTSDGRIQAW 1091
L+ G D W
Sbjct: 283 RLLLAGYDDFNCNVW 297
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.0 bits (159), Expect = 6e-12
Identities = 54/287 (18%), Positives = 95/287 (33%), Gaps = 19/287 (6%)
Query: 813 NGKVLSIACFRDK-IFSGHSDGTIKVW---TGRGSILHLIQQIREHTKAVTGLAILQSGE 868
+ V++ F I SG D T+KVW TG+ ++ + HT V + +
Sbjct: 16 DDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGK-----CLRTLVGHTGGVWSSQMRDNII 70
Query: 869 MLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 928
+ S G + +
Sbjct: 71 ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCL 130
Query: 929 TKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQ 988
L+ +C+ +V G D ++ D T T GH
Sbjct: 131 HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH-------TNRVYSL 183
Query: 989 VHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTL-SEVRAMVVSSELVYLGCKGGTVEI 1047
+G+ + S SLD + +++W N + +L S M + ++ G TV+I
Sbjct: 184 QFDGI-HVVSGSLDTS-IRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKI 241
Query: 1048 WDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094
WD K ++TLQ + L N+ F++ + DG ++ W L
Sbjct: 242 WDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 288
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.4 bits (116), Expect = 1e-06
Identities = 32/160 (20%), Positives = 64/160 (40%), Gaps = 13/160 (8%)
Query: 761 INIHMKDIMKGLRELR----KYSPLAFEMVKVLSNGHDSSADFWN--HRELVHVDSSENG 814
+ + + L L+ + L F+ + V+S D+S W+ +H +
Sbjct: 159 VKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS 218
Query: 815 KVLSIACFRDKIFSGHSDGTIKVW-TGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSG 873
+ + + SG++D T+K+W G L +Q +H AVT L + + +
Sbjct: 219 LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITS 276
Query: 874 SLDKTARVWSIGN-EEIHCVQVHDIK---DQIQNLAVSNS 909
S D T ++W + E I + + + + SN+
Sbjct: 277 SDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT 316
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.4 bits (103), Expect = 5e-05
Identities = 16/107 (14%), Positives = 39/107 (36%), Gaps = 12/107 (11%)
Query: 788 VLSNGHDSSADFWNHRELVHVDSSEN-----GKVLSIACFRDKIFSGHSDGTIKVWTGR- 841
++S DS+ W+ + + + + V + ++ + + DGT+K+W +
Sbjct: 230 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT 289
Query: 842 GSILHLIQQIRE--HTKAVTGLAILQSGEMLYSGSLDKTA----RVW 882
G + + + V + + + GS + T V
Sbjct: 290 GEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336
|
| >d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 59.9 bits (144), Expect = 7e-12
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVL 220
P I+ + +P +G TY+R+ I+E ++R P+TR L+ +L N +
Sbjct: 5 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIP-NLAM 63
Query: 221 KRLIASWQEQNPGGLD 236
K +I ++ +N D
Sbjct: 64 KEVIDAFISENGWVED 79
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 65.6 bits (158), Expect = 1e-11
Identities = 33/280 (11%), Positives = 81/280 (28%), Gaps = 24/280 (8%)
Query: 816 VLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSG 873
+ A +D +I ++ + ++ G+ + +++EH VTG+ + +
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 874 SLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN 933
D+ A VW++ V ++ G+G +V + +
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129
Query: 934 SSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL 993
++ V + LL + ++ +
Sbjct: 130 WWVCKHIKKPIRSTVLSLDWH------------------PNSVLLAAGSCDFKCRIFSAY 171
Query: 994 VYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSELVYLGCKG--GTVEIWDQK 1051
+ M S + V + S+ + TV + D
Sbjct: 172 IKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD 231
Query: 1052 RQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAW 1091
+++ + TL + T + + ++ LV D +
Sbjct: 232 KKMAVATLASETLPLLAVTFITESS--LVAAGHDCFPVLF 269
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.5 bits (98), Expect = 2e-04
Identities = 16/110 (14%), Positives = 36/110 (32%), Gaps = 11/110 (10%)
Query: 787 KVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRG 842
+++ GHD + + +L + K S + + D G
Sbjct: 256 SLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSE---G 312
Query: 843 SILHLIQQIREHTKAVTGLAILQSGE----MLYSGSLDKTARVWSIGNEE 888
S H +V+ +++L G+ + +D +W + + E
Sbjct: 313 SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 63.0 bits (151), Expect = 5e-11
Identities = 38/297 (12%), Positives = 78/297 (26%), Gaps = 17/297 (5%)
Query: 810 SSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE 868
+ G + + + ++ L + EH+ T SG
Sbjct: 14 RTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGS--LTDTEIYTEHSHQTTVAKTSPSGY 71
Query: 869 MLYSGSLDKTARVWSIGNEEIHCVQVHD-----IKDQIQNLAVSNSILCFIPQGAGIKVH 923
SG + R+W +KD + + V
Sbjct: 72 YCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVF 131
Query: 924 LRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANP 983
L + T N + + + V K + + + +
Sbjct: 132 LFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKF 191
Query: 984 VHALQVHNGLVYTASTSLDGAAVKMWSTSN---------YNMVGSLPTLSEVRAMVVSSE 1034
VH+++ + AST DG V +
Sbjct: 192 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT 251
Query: 1035 LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAW 1091
+ T++IW+ +T+ GT + Q + + ++ LV +++G I
Sbjct: 252 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.1 bits (102), Expect = 6e-05
Identities = 27/281 (9%), Positives = 70/281 (24%), Gaps = 19/281 (6%)
Query: 787 KVLSNGHDSSADFWN--HRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG 842
+ + +S + + + + SG G +++W
Sbjct: 30 DKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQ 89
Query: 843 SILHLIQQIREHTKAVTGLAILQSGE----------MLYSGSLDKTARVWSIGNEEIHCV 892
+ L I + V ++ + L T + +
Sbjct: 90 TTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAM 149
Query: 893 QVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGC 952
D K +S S + G ++ + + G
Sbjct: 150 NSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG 209
Query: 953 QDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTS 1012
+ + + K + + V L AS S D +K+W+ +
Sbjct: 210 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT-IKIWNVA 268
Query: 1013 NYNMVGSLPTLSEVRAMVV----SSELVYLGCKGGTVEIWD 1049
+ ++P + + + + + + G + +
Sbjct: 269 TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309
|
| >d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: brca1 RING domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.8 bits (139), Expect = 7e-11
Identities = 12/70 (17%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 162 KDFVCPITTHIFDDPVTLETGQTYERRAIQEWIE--RGNSSCPITRQKLSSTKLPKTNYV 219
K CPI + +PV+ + + + + + + +G S CP+ + ++ L + +
Sbjct: 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQE-STR 78
Query: 220 LKRLIASWQE 229
+L+ +
Sbjct: 79 FSQLVEELLK 88
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.4 bits (147), Expect = 2e-10
Identities = 53/328 (16%), Positives = 106/328 (32%), Gaps = 37/328 (11%)
Query: 799 FWNHRELVH-VDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIR---- 852
+H +V V S +G+ L+ C + +++ + + + + +
Sbjct: 58 SLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSS 117
Query: 853 -EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSIL 911
+ + G+ L +G+ D+ R+W I N +I + +D +
Sbjct: 118 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK 177
Query: 912 CFIPQGAG------IKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATG 965
G ++ + + + + G D A++ D TG
Sbjct: 178 LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 237
Query: 966 T-FATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTL- 1023
+ + + G + V+++ S SLD + VK+W+ N N T
Sbjct: 238 FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS-VKLWNLQNANNKSDSKTPN 296
Query: 1024 ------------SEVRAMVVS--SELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQC 1069
V ++ + E + G K V WD+K + LQ G V
Sbjct: 297 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ-GHRNSVIS 355
Query: 1070 MA------LDDNEEFLVIGTSDGRIQAW 1091
+A L G+ D + + W
Sbjct: 356 VAVANGSSLGPEYNVFATGSGDCKARIW 383
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.3 bits (134), Expect = 9e-09
Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 10/93 (10%)
Query: 800 WNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKA 857
N VLS+A ++ I SG D + W + + + ++ H +
Sbjct: 295 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG--NPLLMLQGHRNS 352
Query: 858 VTGLAILQS------GEMLYSGSLDKTARVWSI 884
V +A+ + +GS D AR+W
Sbjct: 353 VISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.0 bits (133), Expect = 1e-08
Identities = 32/205 (15%), Positives = 65/205 (31%), Gaps = 50/205 (24%)
Query: 821 CFRDKIFSGHSDGTIKVWTGRGSILH-----LIQQIREHTKAVTGLAILQSGEMLYSGSL 875
I +G D ++VW L + H +V + + G+ + SGSL
Sbjct: 215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL 274
Query: 876 DKTARVWSI--GNEEIHCVQVHDIKDQIQNLAVSNSI--LCFIPQGAGIKVHLRNGKTKL 931
D++ ++W++ N + + ++ + + + +
Sbjct: 275 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-------------- 320
Query: 932 LNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHN 991
+ G +D + D +G + GHR N V ++ V N
Sbjct: 321 --------------EYILSGSKDRGVLFWDKKSGNPLLMLQGHR------NSVISVAVAN 360
Query: 992 GLVYT------ASTSLDGAAVKMWS 1010
G A+ S D ++W
Sbjct: 361 GSSLGPEYNVFATGSGDC-KARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.3 bits (113), Expect = 3e-06
Identities = 32/278 (11%), Positives = 73/278 (26%), Gaps = 33/278 (11%)
Query: 826 IFSGHSDGTIKVW-TGRGSILHL-IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWS 883
++ ++ + + + + +HT V + GE L +G +KT +V+
Sbjct: 31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYR 89
Query: 884 IGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVH-LRNGKTKLLNSSKYPKCLA 942
+ + V + D ++ + + + + ++ L
Sbjct: 90 VSDGS----LVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLI 145
Query: 943 LVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLD 1002
+ V + G + D
Sbjct: 146 RIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED 205
Query: 1003 GAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQ-- 1060
G S + + + G V +WD + +E L
Sbjct: 206 GVTTVAVSPGDGKYIAA-------------------GSLDRAVRVWDSETGFLVERLDSE 246
Query: 1061 ----TGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094
TG V + + + +V G+ D ++ W L
Sbjct: 247 NESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ 284
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.5 bits (111), Expect = 6e-06
Identities = 25/138 (18%), Positives = 49/138 (35%), Gaps = 16/138 (11%)
Query: 793 HDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSIL----- 845
++ + V S+ RD + SG D ++K+W + +
Sbjct: 234 SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 293
Query: 846 -----HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGN-EEIHCVQVHDIKD 899
H V +A Q+ E + SGS D+ W + + +Q H ++
Sbjct: 294 TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH--RN 351
Query: 900 QIQNLAVSNSILCFIPQG 917
+ ++AV+N P+
Sbjct: 352 SVISVAVANGS-SLGPEY 368
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.1 bits (146), Expect = 2e-10
Identities = 37/312 (11%), Positives = 85/312 (27%), Gaps = 28/312 (8%)
Query: 810 SSENGKVLSIACFRD--KIFSGHSDGT-IKVWTGRGSILHLIQQIREH-TKAVTGLAI-- 863
S++ ++ I ++ S + + Q H + VT +
Sbjct: 14 STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP 73
Query: 864 LQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVH 923
++ + L SG VW ++ ++K + Q LA S + + +G + V
Sbjct: 74 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV 133
Query: 924 LRN----GKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLG 979
G +S ++ ++ + + G ++
Sbjct: 134 GEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK 193
Query: 980 KANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNM----------------VGSLPTL 1023
+ V S D + S+ +
Sbjct: 194 FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG 253
Query: 1024 SEVRAMVVSSELVYLGCKGGTVEIWD--QKRQIRIETLQTGTSGKVQCMALDDNEEFLVI 1081
+ S+ T+ +WD + ++ TL G Q + ++
Sbjct: 254 GIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIIS 313
Query: 1082 GTSDGRIQAWGL 1093
+ DG + + L
Sbjct: 314 LSLDGTLNFYEL 325
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.0 bits (146), Expect = 3e-10
Identities = 24/286 (8%), Positives = 59/286 (20%), Gaps = 10/286 (3%)
Query: 813 NGKVLSIACFRD--KIFSGHSDGTIKVW---TGRGSILHLIQQIREHTKAVTGLAILQSG 867
V ++ +++G G +KVW + +L G
Sbjct: 51 GEVVCAVTISNPTRHVYTG-GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109
Query: 868 EMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNG 927
L G T +W + +
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169
Query: 928 KTKLLNSSKYPKCLALVQGKVY-CGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHA 986
++ +D ++ + + + + +
Sbjct: 170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFS 229
Query: 987 LQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVR-AMVVSSELVYLGCKGGTV 1045
L + A + L + + K +
Sbjct: 230 LGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLL 289
Query: 1046 EIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAW 1091
W I S V + +++++V G+ D + +
Sbjct: 290 NAWRTPYGASIFQS--KESSSVLSCDISVDDKYIVTGSGDKKATVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.9 bits (138), Expect = 2e-09
Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 5/108 (4%)
Query: 778 YSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKV 837
Y P + + + + + L A S D +
Sbjct: 232 YCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNA 291
Query: 838 W-TGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSI 884
W T G+ + + + +V I + + +GS DK A V+ +
Sbjct: 292 WRTPYGASIFQS----KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (105), Expect = 3e-05
Identities = 27/268 (10%), Positives = 67/268 (25%), Gaps = 14/268 (5%)
Query: 832 DGTIKVWTGR-GSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGN---- 886
D I R ++ + H + V + I +Y+G +VW I +
Sbjct: 31 DALIGPGIPRHARQINTLN----HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK 85
Query: 887 EEIHCVQVHDIKDQIQNLAVS---NSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLAL 943
+ + + + I++ + +++ L ++
Sbjct: 86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY 145
Query: 944 VQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG 1003
+ QT R+ G + + + N + LD
Sbjct: 146 ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDN 205
Query: 1004 AAVKMWSTSNYNMVGSLPTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGT 1063
+ S++ ++ +L + + +
Sbjct: 206 TVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLH 264
Query: 1064 SGKVQCMALDDNEEFLVIGTSDGRIQAW 1091
V + ++ V D + AW
Sbjct: 265 ESCVLSLKFAYCGKWFVSTGKDNLLNAW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.9 bits (143), Expect = 4e-10
Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 11/104 (10%)
Query: 788 VLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSI- 844
V+S D++ W+ + V V I +I SG DG IKVW ++
Sbjct: 191 VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALD 250
Query: 845 ------LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVW 882
++ + EH+ V L + S S D T +W
Sbjct: 251 PRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.5 bits (142), Expect = 6e-10
Identities = 48/254 (18%), Positives = 91/254 (35%), Gaps = 15/254 (5%)
Query: 846 HLIQQIR---EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGN-EEIHCVQVHDIKDQI 901
H +Q+I E +K V L + + SG D T ++W E + H +
Sbjct: 3 HSLQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGH--TGSV 58
Query: 902 QNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEID 961
L ++ + ++V N L + + + ++ + I
Sbjct: 59 LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIA 118
Query: 962 LATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP 1021
+ T T R L+G V+ + + + S S D +K+W+TS V +L
Sbjct: 119 VWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV--SASGDRT-IKVWNTSTCEFVRTLN 175
Query: 1022 TLS-EVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLV 1080
+ + LV G T+ +WD + L+ + + + + +V
Sbjct: 176 GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRFDNKRIV 232
Query: 1081 IGTSDGRIQAWGLS 1094
G DG+I+ W L
Sbjct: 233 SGAYDGKIKVWDLV 246
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.7 bits (140), Expect = 9e-10
Identities = 54/301 (17%), Positives = 100/301 (33%), Gaps = 31/301 (10%)
Query: 806 VHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ 865
+H S + V + KI SG D TIK+W L + + HT +V LQ
Sbjct: 8 IHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNT--LECKRILTGHTGSVL---CLQ 62
Query: 866 SGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR 925
E + + N + + + +L +N ++ + I V
Sbjct: 63 YDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDM 122
Query: 926 NGKTK------LLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLG 979
T L+ + + D I+ + +T F GH+
Sbjct: 123 ASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK---- 178
Query: 980 KANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEV-RAMVVSSELVYL 1038
+ LQ + LV + S+ D +++W + L E+ R + ++ +
Sbjct: 179 --RGIACLQYRDRLVVSGSS--DN-TIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVS 233
Query: 1039 GCKGGTVEIWDQKRQIRIETLQ--------TGTSGKVQCMALDDNEEFLVIGTSDGRIQA 1090
G G +++WD + SG+V + D+ +V + D I
Sbjct: 234 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--QIVSSSHDDTILI 291
Query: 1091 W 1091
W
Sbjct: 292 W 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.1 bits (89), Expect = 0.002
Identities = 23/142 (16%), Positives = 45/142 (31%), Gaps = 18/142 (12%)
Query: 783 FEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTG 840
F+ ++S D + WN E V + + + + SG SD TI++W
Sbjct: 146 FDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI 205
Query: 841 RGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSI----------GNEEIH 890
+ + E + + SG+ D +VW + G +
Sbjct: 206 ECGACLRVLEGHEELVRCIR----FDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLR 261
Query: 891 CVQVHDIKDQIQNLAVSNSILC 912
+ H ++ L +
Sbjct: 262 TLVEHS--GRVFRLQFDEFQIV 281
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.7 bits (140), Expect = 2e-09
Identities = 37/333 (11%), Positives = 88/333 (26%), Gaps = 68/333 (20%)
Query: 806 VHVDSSENGKVLSIACFRDKIFSGHSDGTIKVW----TGRGSILHLIQQIREHTKAVTGL 861
+ + + + S++ S DG +KVW + H + +
Sbjct: 7 ANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66
Query: 862 AILQS-------GEMLYSGSLDKTARVWSIGNEEIHCVQV-------------------- 894
+LQ+ ++ + S + I E+ +
Sbjct: 67 DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK 126
Query: 895 -----------------HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKY 937
I + + L+ + S++
Sbjct: 127 WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF 186
Query: 938 PKCLALVQ-GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYT 996
+ + + G + G +G +Q +L+T ++ +N + +++
Sbjct: 187 ATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL 246
Query: 997 ASTSLDGAA--VKMWSTSNYNMVGSLPTLSEVRAMVVS----------------SELVYL 1038
A + + ++ T +GSL + + E +
Sbjct: 247 AIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS 306
Query: 1039 GCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMA 1071
G + WD K + RI TL ++
Sbjct: 307 AGWDGKLRFWDVKTKERITTL-NMHCDDIEIEE 338
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 57.9 bits (138), Expect = 2e-09
Identities = 31/309 (10%), Positives = 79/309 (25%), Gaps = 43/309 (13%)
Query: 823 RDKIFSGHSDGTIKVW-TGRGSILHLIQQIREHTKAVTGLAILQSGEMLY-SGSLDKTAR 880
RD I + + V T + ++ +I I + + G + Y + + ++
Sbjct: 1 RDYILAPARPDKLVVIDTEKMAVDKVI-TIADAGPTPMVPMVAPGGRIAYATVNKSESLV 59
Query: 881 VWSIGNEEI----HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS- 935
+ E + + A+S + +++ L + + + +
Sbjct: 60 KIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVAL 119
Query: 936 ---------------KYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGK 980
+ LA + + +D GT +
Sbjct: 120 YDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAET 179
Query: 981 ANPVHALQVH------------------NGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT 1022
L V + + G T M
Sbjct: 180 YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM 239
Query: 1023 LSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIG 1082
+ V+ +E +D ++ I+ + S + + + + +G
Sbjct: 240 DVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHS--YYSVNVSTDGSTVWLG 297
Query: 1083 TSDGRIQAW 1091
+ G + A+
Sbjct: 298 GALGDLAAY 306
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 51.0 bits (120), Expect = 4e-07
Identities = 31/321 (9%), Positives = 82/321 (25%), Gaps = 42/321 (13%)
Query: 788 VLSNGHDSSADFWN--HRELVHV--DSSENGKVLSIACFRDK---IFSGHSDGTIKVW-- 838
+L+ + + V + + + + ++
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63
Query: 839 -TGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIH------- 890
TG + E K++ G A+ G+ L + +
Sbjct: 64 VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123
Query: 891 ---CVQVHDIKDQIQNLAVS-----------NSILCFIPQGAGIKVHLRNGKTKLLNSSK 936
+ + QI LA + + + G ++ +
Sbjct: 124 TLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQP 183
Query: 937 YPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYT 996
+ D+ +TG + + + +V V+
Sbjct: 184 DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFY 243
Query: 997 ASTSLDGAA---------VKMWSTSNYNMVGSLPTLSEVRAMVVSS--ELVYLGCKGGTV 1045
ST+++ A ++ + + +P ++ VS+ V+LG G +
Sbjct: 244 FSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDL 303
Query: 1046 EIWDQKRQIRIETLQTGTSGK 1066
+D + + + +
Sbjct: 304 AAYDAETLEKKGQVDLPGNAS 324
|
| >d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: CBL species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.3 bits (125), Expect = 3e-09
Identities = 10/51 (19%), Positives = 15/51 (29%)
Query: 163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKL 213
+C I D G + W E CP R ++ T+
Sbjct: 23 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 73
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.2 bits (136), Expect = 4e-09
Identities = 32/324 (9%), Positives = 82/324 (25%), Gaps = 40/324 (12%)
Query: 804 ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVW-TGRGSILHLIQQIREHTKAVTG 860
++V ++ + + I + DG++ V+ + + Q + +
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61
Query: 861 LAIL-QSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAG 919
+ + +Y G++ + ++ + I
Sbjct: 62 CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD 121
Query: 920 IKVHLRNGKTKLLNSS-------------KYPKCLALVQGKVYCGCQDGAIQEIDLATGT 966
+ + + + + ++ G + +Q L
Sbjct: 122 GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCE 181
Query: 967 FATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEV 1026
L + V L +S DG V + + +
Sbjct: 182 DDNGTIEESGLKYQIRDVALLPKEQEGYACSSI--DG-RVAVEFFDDQGDDYNSSKRFAF 238
Query: 1027 RAMVVSSE------------------LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQ 1068
R ++ + +Y G + W+ + + +I+ V
Sbjct: 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVV 298
Query: 1069 CMALDDNEEFLVIGTSDGRIQAWG 1092
+A DN L + TSD +
Sbjct: 299 KIACSDN--ILCLATSDDTFKTNA 320
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.7 bits (101), Expect = 9e-05
Identities = 15/102 (14%), Positives = 39/102 (38%), Gaps = 5/102 (4%)
Query: 800 WNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVT 859
+ L + + + + +++ SDG I W + I+ + + +
Sbjct: 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR--KKIKNFAKFNE-DS 296
Query: 860 GLAILQSGEMLYSGSLDKTARVWSIGNE--EIHCVQVHDIKD 899
+ I S +L + D T + + ++ E++ ++ I D
Sbjct: 297 VVKIACSDNILCLATSDDTFKTNAAIDQTIELNASSIYIIFD 338
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.5 bits (134), Expect = 6e-09
Identities = 40/293 (13%), Positives = 89/293 (30%), Gaps = 13/293 (4%)
Query: 802 HRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGL 861
H E++ S N + ++ + + SG DG I W ++H+ + L
Sbjct: 2 HDEVLKTISGHNKGITALTV--NPLISGSYDGRIMEW-------SSSSMHQDHSNLIVSL 52
Query: 862 AILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIK 921
++ E D +E +V + ++N I Q
Sbjct: 53 DNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGD 112
Query: 922 VHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQ---TGHRKLL 978
+ ++ + V + Q + +++++ ++ +
Sbjct: 113 IIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISP 172
Query: 979 GKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSELVYL 1038
+ + L+Y + + + TS N + P + +LV
Sbjct: 173 SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVAT 232
Query: 1039 GCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAW 1091
G + I+ KR ++I V + + LV +D I+ W
Sbjct: 233 GSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRW 284
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.3 bits (123), Expect = 1e-07
Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 2/86 (2%)
Query: 799 FWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAV 858
F + D + +G D I +++ + + +I+ + H V
Sbjct: 203 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP-MKIIKALNAHKDGV 261
Query: 859 TGLAILQSGEMLYSGSLDKTARVWSI 884
L L S D + W++
Sbjct: 262 NNLLWETPS-TLVSSGADACIKRWNV 286
|
| >d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 51.5 bits (123), Expect = 9e-09
Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 161 PKDFV----CPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKL 213
P FV C I HI DPV + R I ++ S CP R T L
Sbjct: 17 PAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 55.8 bits (132), Expect = 1e-08
Identities = 45/290 (15%), Positives = 87/290 (30%), Gaps = 11/290 (3%)
Query: 813 NGKVLSIACFRD--KIFSGHSDGTIKVW-TGRGSILHLIQQIREHTKAVTGLAILQSGEM 869
N + +++ D +FS ++G I W G + H +TG+ G++
Sbjct: 12 NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPD--VHATMITGIKTTSKGDL 69
Query: 870 LYSGSLDKTARVWSIGNE-EIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 928
D V + G+ + + + Q LAVS + +GK
Sbjct: 70 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK 129
Query: 929 TKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQ 988
+ S C+AL K + + + + + V
Sbjct: 130 LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN 189
Query: 989 VHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSELVYL--GCKGGTVE 1046
LV T + + + ++V + S + V L G +V
Sbjct: 190 NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVI 249
Query: 1047 IWD--QKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094
+W+ + I V + + E +V D I+ W +
Sbjct: 250 VWNMNKPSDHPIIIKGAHAMSSVNSVIWLN-ETTIVSAGQDSNIKFWNVP 298
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 47.3 bits (110), Expect = 5e-06
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 1/85 (1%)
Query: 848 IQQIRE-HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAV 906
I Q+R H KA+T L+ G+ L+S + W I + V I +
Sbjct: 4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63
Query: 907 SNSILCFIPQGAGIKVHLRNGKTKL 931
++ F + G + +
Sbjct: 64 TSKGDLFTVSWDDHLKVVPAGGSGV 88
|
| >d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Ubiquitin conjugation factor E4A species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.4 bits (117), Expect = 6e-08
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 160 PPKDFVCPITTHIFDDPVTLETGQ-TYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNY 218
+F+ PI + + DPV L + + T +R I + + + + N
Sbjct: 19 ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPL--TMDQIRPNT 76
Query: 219 VLKRLIASWQEQN 231
LK I W +
Sbjct: 77 ELKEKIQRWLAER 89
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 50.2 bits (118), Expect = 8e-07
Identities = 36/299 (12%), Positives = 77/299 (25%), Gaps = 44/299 (14%)
Query: 807 HVDSSENGKVLSIAC-FRDKIFSGHSDGTIKVW-TGRGSILHLIQQIREHTKAV----TG 860
+ +++G ++ A +I G ++V+ I+ V
Sbjct: 51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWM 110
Query: 861 LAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSN-SILCFIPQGAG 919
++ G+ L V + E ++ D+ D + + G+
Sbjct: 111 TSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSL 170
Query: 920 IKVHLRNGKTKLLNSSKYPKCLALVQ----------GKVYCGCQDGAIQEIDLATGTFAT 969
KV T + ++ G++ G I +IDL++G
Sbjct: 171 AKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKF 230
Query: 970 IQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGA-------------------AVKMWS 1010
+ A G + V +
Sbjct: 231 LPAVE----ALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD 286
Query: 1011 TSNYNMVGSLPTLSEVRAMVVS----SELVYLGCKGGTVEIWDQKRQIRIETLQTGTSG 1065
+ E+ ++ VS L L T+ I D + + ++ G
Sbjct: 287 AKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHG 345
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 49.4 bits (116), Expect = 1e-06
Identities = 24/317 (7%), Positives = 63/317 (19%), Gaps = 60/317 (18%)
Query: 826 IFSGHSDGTIKVW-TGRGSILHLIQQIREHTKAVTGLAILQSGEMLY-SGSLDKTARVWS 883
+ + + V ++ + Y +
Sbjct: 11 MIVTNYPNNLHVVDVASDTVYKSCVM--PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGID 68
Query: 884 IGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLAL 943
+ + S P G + + + + P L +
Sbjct: 69 LDTCKNTFHANLSSVPGEV--GRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEV 126
Query: 944 VQ---------------------------GKVYCGCQDGAIQEIDLATGT-FATIQTGHR 975
G +Y I ++D+ TG + +
Sbjct: 127 FSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA--GPDIYKMDVKTGKYTVALPLRNW 184
Query: 976 KLLG------------------KANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMV 1017
G + + + A+ L
Sbjct: 185 NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY-GYLSVDLKTGKTH 243
Query: 1018 GSLPTLSE---VRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDD 1074
+ + + + +D K++ I+ + C+A D
Sbjct: 244 TQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHT--YYCVAFDK 301
Query: 1075 NEEFLVIGTSDGRIQAW 1091
+ L +G + + +
Sbjct: 302 KGDKLYLGGTFNDLAVF 318
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 49.4 bits (116), Expect = 1e-06
Identities = 26/322 (8%), Positives = 77/322 (23%), Gaps = 47/322 (14%)
Query: 788 VLSNGHDSSADFWN---HRELVHVDSSENGKVLSIACFRD--KIF-SGHSDGTIKVW--- 838
++ + ++ + + + D + + G I
Sbjct: 11 MIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD 70
Query: 839 -TGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIG------------ 885
+L E +++ AI G+ +Y+
Sbjct: 71 TCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA 130
Query: 886 -NEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK---TKLLNSSKYPKCL 941
E V+ + Q+ + ++ ++ K+ ++ GK L +
Sbjct: 131 DGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYS 190
Query: 942 ALVQGKVYCGCQDG------------AIQEIDLATGTF----ATIQTGHRKLLGKANPVH 985
A + + D AT ++ K +
Sbjct: 191 APDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADL 250
Query: 986 ALQVHNGLVYTAS---TSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVS--SELVYLGC 1040
GL + + ++ + + + +YLG
Sbjct: 251 TELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGG 310
Query: 1041 KGGTVEIWDQKRQIRIETLQTG 1062
+ +++ +++ ++
Sbjct: 311 TFNDLAVFNPDTLEKVKNIKLP 332
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 40.9 bits (94), Expect = 7e-04
Identities = 8/80 (10%), Positives = 25/80 (31%), Gaps = 6/80 (7%)
Query: 819 IACFRDKIFSGHSDGTIKVWTGR-GSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDK 877
+ +D + + + ++ +A + G+ LY G
Sbjct: 258 LRSPKDPNQIYGVLNRLAKYDLKQRKLIKAA----NLDHTYYCVAFDKKGDKLYLGGTFN 313
Query: 878 TARVWSIG-NEEIHCVQVHD 896
V++ E++ +++
Sbjct: 314 DLAVFNPDTLEKVKNIKLPG 333
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 46.4 bits (108), Expect = 1e-05
Identities = 9/112 (8%), Positives = 30/112 (26%), Gaps = 12/112 (10%)
Query: 790 SNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDK-----IFSGHSDGTIKVWTGRGSI 844
++ + S+ + +L + G + + +
Sbjct: 250 NDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT-- 307
Query: 845 LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGN-EEIHCVQVH 895
+++ E +T L + + + D + + E+ V+
Sbjct: 308 ----RKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETD 355
|
| >d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Acute promyelocytic leukaemia proto-oncoprotein PML species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (96), Expect = 2e-05
Identities = 8/50 (16%), Positives = 11/50 (22%), Gaps = 4/50 (8%)
Query: 162 KDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSST 211
+ C P L T +E CPI +
Sbjct: 5 QFLRCQQCQAEAKCPKLLPCLHTLCS----GCLEASGMQCPICQAPWPLG 50
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.7 bits (101), Expect = 9e-05
Identities = 46/306 (15%), Positives = 91/306 (29%), Gaps = 36/306 (11%)
Query: 813 NGKVLSIACFRDK-IFSGHSDGTIKVW---TGRGSILHLIQQIREHTKAVTGLAILQSGE 868
V++ F D + +G D I+V+ + + Q+ H V L G
Sbjct: 12 MTSVITCLQFEDNYVITGADDKMIRVYDSINKK-----FLLQLSGHDGGVWALKYAHGG- 65
Query: 869 MLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAG---IKV-HL 924
+L SGS D+T RVW I V V + +I G+ + V L
Sbjct: 66 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125
Query: 925 RNGKTKLLNSSKYPKCLAL-------------------VQGKVYCGCQDGAIQEIDLATG 965
+ + ++ L V+ G + +
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185
Query: 966 TFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSE 1025
L G + +++ + S S+D + M +
Sbjct: 186 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL 245
Query: 1026 VRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSD 1085
V + +S + + G++ WD R + + + DN +++ S+
Sbjct: 246 VGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDN---ILVSGSE 302
Query: 1086 GRIQAW 1091
+ +
Sbjct: 303 NQFNIY 308
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.8 bits (96), Expect = 3e-04
Identities = 39/339 (11%), Positives = 100/339 (29%), Gaps = 23/339 (6%)
Query: 778 YSPLAFEMVKVLSNGHDSSADFWN--HRELVHVDSSENGKVLSIACFRDK-IFSGHSDGT 834
+ L FE V++ D ++ +++ + S +G V ++ + SG +D T
Sbjct: 16 ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRT 75
Query: 835 IKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSI---------G 885
++VW + + + T + ++ + + +GS D T VW + G
Sbjct: 76 VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG 135
Query: 886 NEEIHCVQVHDIKDQIQNLAV----SNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCL 941
E + + H ++ + V S+ G + + + + ++
Sbjct: 136 EEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLY 195
Query: 942 ALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSL 1001
L + + + T G+ + S
Sbjct: 196 ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKF 255
Query: 1002 DGAAVKMWSTSNYNMVGSLPTLSEVRAMVVS------SELVYLGCKGGTVEIWDQKRQIR 1055
+A S ++ S + + S+ + + I++ +
Sbjct: 256 LVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKL 315
Query: 1056 IETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094
+ + ++ + + DG+ L
Sbjct: 316 VHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEILD 353
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 43.4 bits (101), Expect = 1e-04
Identities = 24/291 (8%), Positives = 61/291 (20%), Gaps = 38/291 (13%)
Query: 807 HVDSSENGKVLSIAC-FRDKIFSGHSDGTIKVW-TGRGSILHLIQQIREHTKAVT----G 860
+ +G ++A + G ++V+ + I+ +V
Sbjct: 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHI 128
Query: 861 LAILQSGEMLY-SGSLDKTARVWSI-GNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGA 918
+ S L A S+ G + + + + + +
Sbjct: 129 IGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSAS--CFHIHPGAAATHYLGSCPAS 186
Query: 919 GIKVHLRNGKTKLLNSSKYP-----------------KCLALVQGKVYCGCQDGAIQEID 961
L + V + G A
Sbjct: 187 LAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAA-GATM 245
Query: 962 LATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTA------STSLDGAAVKMWSTSNYN 1015
A + A + + S + S
Sbjct: 246 KAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ 305
Query: 1016 MVGSLPTLSEVRAMVVSSE---LVY-LGCKGGTVEIWDQKRQIRIETLQTG 1062
G + + A++ + + Y ++I+D +++
Sbjct: 306 TSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD 356
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 42.7 bits (99), Expect = 2e-04
Identities = 23/308 (7%), Positives = 58/308 (18%), Gaps = 46/308 (14%)
Query: 827 FSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGL--------AILQSGEMLYSGSLDKT 878
+ GT + W + ++ S G
Sbjct: 38 LPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDY 97
Query: 879 ARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYP 938
V+ + ++ I+ A + L S
Sbjct: 98 VEVFDPVTFLPIA-DIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGA 156
Query: 939 KCLALVQGK------------VYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHA 986
L + Y G ++ DLA A G + + A
Sbjct: 157 SDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQA 216
Query: 987 LQVHNGLVYTASTSLDGAAVKMWSTSNYNM------------VGSLPTLSEVRAMVVSSE 1034
Q + + + + + + ++ A + +++
Sbjct: 217 AQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTD 276
Query: 1035 LVYLGCK---------GGTVEIWDQKRQIRIETLQTGTSGKVQCMAL--DDNEEFLVIGT 1083
+ + + G + D +
Sbjct: 277 GIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG--HDSDAIIAAQDGASDNYANSA 334
Query: 1084 SDGRIQAW 1091
+ +
Sbjct: 335 GTEVLDIY 342
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 42.9 bits (99), Expect = 1e-04
Identities = 26/296 (8%), Positives = 65/296 (21%), Gaps = 33/296 (11%)
Query: 828 SGHSDGTIKVWT-GRGSILHLIQQIREHTKAVTGLAILQSGEMLY-SGSLDKTARVWSI- 884
+ I VW L L Q + + V + + LY + + I
Sbjct: 9 ASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67
Query: 885 -GNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHL--------RNGKTKLLNSS 935
+ + + + +++ + G ++
Sbjct: 68 PDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL 127
Query: 936 KYPKCLALVQGKVYCGCQDGAIQEIDL----ATGTFATIQTGHRKLLGKANPVH-ALQVH 990
+ I L G + A P H +
Sbjct: 128 DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN 187
Query: 991 NGLVYTASTSLDGAAVKMWST---------SNYNMVGSLPTLSEVRAMVVS---SELVYL 1038
Y + V + M + + ++ L
Sbjct: 188 EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYAC 247
Query: 1039 GCKGGTVEIWDQKRQIRIETLQ--TGTSGKVQCMALDDNEEFL-VIGTSDGRIQAW 1091
+ ++ + + + T + + +D + ++L G I +
Sbjct: 248 DRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVY 303
|
| >d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Immediate early protein, IEEHV species: Equine herpesvirus 1 [TaxId: 10326]
Score = 36.8 bits (85), Expect = 8e-04
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 166 CPITTHIFDDPVT-LETGQTYERRAIQEWIERGNSSCPITRQKLSS 210
CPI + L + I WI + N +CP+ + + S
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52
|
| >d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: TFIIH Mat1 subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.1 bits (80), Expect = 0.003
Identities = 11/56 (19%), Positives = 16/56 (28%), Gaps = 5/56 (8%)
Query: 163 DFVCPITTHIFDDPVTLET-----GQTYERRAIQEWIERGNSSCPITRQKLSSTKL 213
D CP +L+ G T + RG +CP L +
Sbjct: 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1094 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.98 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.98 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.97 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.97 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.97 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.96 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.96 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.96 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.96 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.96 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.94 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.94 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.94 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.94 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.92 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.92 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.91 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.9 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.89 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.89 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.86 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.85 | |
| d2c2la2 | 80 | STIP1 homology and U box-containing protein 1, STU | 99.8 | |
| d1t1ha_ | 78 | E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi | 99.8 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.79 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.78 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.77 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.77 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.74 | |
| d1wgma_ | 98 | Ubiquitin conjugation factor E4A {Human (Homo sapi | 99.73 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.72 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.71 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.71 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.7 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.68 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.62 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.62 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.59 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.57 | |
| d1rmda2 | 86 | V(D)J recombination activating protein 1 (RAG1), d | 99.52 | |
| d1jm7a_ | 103 | brca1 RING domain {Human (Homo sapiens) [TaxId: 96 | 99.48 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.47 | |
| d1jm7b_ | 97 | bard1 RING domain {Human (Homo sapiens) [TaxId: 96 | 99.42 | |
| d2baya1 | 56 | Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac | 99.42 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.35 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.31 | |
| d1fbva4 | 79 | CBL {Human (Homo sapiens) [TaxId: 9606]} | 99.28 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.26 | |
| d1bora_ | 56 | Acute promyelocytic leukaemia proto-oncoprotein PM | 99.14 | |
| d1g25a_ | 65 | TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 | 99.13 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.1 | |
| d1chca_ | 68 | Immediate early protein, IEEHV {Equine herpesvirus | 99.04 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.02 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.93 | |
| d1ur6b_ | 52 | Not-4 N-terminal RING finger domain {Human (Homo s | 98.91 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 98.91 | |
| d1iyma_ | 55 | EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 | 98.9 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 98.87 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 98.65 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.63 | |
| d1v87a_ | 114 | Deltex protein 2 RING-H2 domain {Mouse (Mus muscul | 98.61 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 98.55 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.54 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.52 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.5 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.47 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 98.46 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.44 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.38 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.37 | |
| d3dplr1 | 88 | RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase | 98.37 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 98.37 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.36 | |
| d1vyxa_ | 60 | IE1B protein (ORF K3), N-terminal domain {Kaposi's | 98.36 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 98.34 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.33 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.29 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 98.23 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.05 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.95 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.92 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.91 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 97.89 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.88 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.83 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.81 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.7 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.69 | |
| d1wima_ | 94 | UbcM4-interacting protein 4 (KIAA0161) {Human (Hom | 97.67 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.24 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.16 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.07 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.86 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.77 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.76 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.58 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 96.57 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 95.69 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 95.53 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.65 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 94.6 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 94.47 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 94.44 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 94.34 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 94.18 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 94.1 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 93.78 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 92.27 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 90.81 | |
| d1weoa_ | 93 | Cellulose synthase A catalytic subunit 7, IRX3 {Th | 89.87 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 89.52 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 88.22 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 87.68 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 86.62 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 86.22 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 85.19 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 84.05 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 81.15 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 81.05 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 80.13 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.9e-33 Score=313.61 Aligned_cols=273 Identities=15% Similarity=0.194 Sum_probs=234.2
Q ss_pred hccccccccccCcEEEEeeCCCCeEEEeCCc-------ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCc
Q 001349 774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHRE-------LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI 844 (1094)
Q Consensus 774 ~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~-------~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~ 844 (1094)
..+....+++++.+|++|+ ||.|+|||+.. ......+|.+.|.+++|+|+ +|++|+.||+|++||+....
T Consensus 52 ~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~ 130 (337)
T d1gxra_ 52 EVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT 130 (337)
T ss_dssp SCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-
T ss_pred CcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccc
Confidence 3455667888999999987 89999999862 12234579999999999997 99999999999999998765
Q ss_pred ceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEE
Q 001349 845 LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHL 924 (1094)
Q Consensus 845 ~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~ 924 (1094)
......+..|...|..+.|+|++.++++++.|+.|++||+.+++.. .....+...+.++. |++++.
T Consensus 131 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~-~~~~~~~~~v~~l~-------~s~~~~------ 196 (337)
T d1gxra_ 131 PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLV-RQFQGHTDGASCID-------ISNDGT------ 196 (337)
T ss_dssp -EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-EEECCCSSCEEEEE-------ECTTSS------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccc-------cccccc------
Confidence 5677888899999999999999999999999999999999987532 23334556666665 666665
Q ss_pred eCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCC
Q 001349 925 RNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGA 1004 (1094)
Q Consensus 925 ~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~ 1004 (1094)
.+++|+.||.|++||+++++.+.. ..|...|.+++|+|++.++++++.|+
T Consensus 197 ----------------------~~~~~~~d~~v~i~d~~~~~~~~~-------~~~~~~i~~l~~~~~~~~l~~~~~d~- 246 (337)
T d1gxra_ 197 ----------------------KLWTGGLDNTVRSWDLREGRQLQQ-------HDFTSQIFSLGYCPTGEWLAVGMESS- 246 (337)
T ss_dssp ----------------------EEEEEETTSEEEEEETTTTEEEEE-------EECSSCEEEEEECTTSSEEEEEETTS-
T ss_pred ----------------------ccccccccccccccccccceeecc-------cccccceEEEEEcccccccceecccc-
Confidence 478899999999999999887633 24678999999999999999999986
Q ss_pred EEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEE
Q 001349 1005 AVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIG 1082 (1094)
Q Consensus 1005 ~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sg 1082 (1094)
.+++||++++.......|...|.+++|+|+ ++++|+.||.|++||..+++.+..+ +|.+.|++++|+||+++|++|
T Consensus 247 ~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~s~d~~~l~t~ 324 (337)
T d1gxra_ 247 NVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS--KESSSVLSCDISVDDKYIVTG 324 (337)
T ss_dssp CEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--ECSSCEEEEEECTTSCEEEEE
T ss_pred ccccccccccccccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc--cCCCCEEEEEEeCCCCEEEEE
Confidence 999999999988877778999999999998 8999999999999999999998887 478899999999999999999
Q ss_pred eCCCcEEEEeC
Q 001349 1083 TSDGRIQAWGL 1093 (1094)
Q Consensus 1083 s~DG~I~iWdl 1093 (1094)
+.||+|+||||
T Consensus 325 s~D~~I~vWdl 335 (337)
T d1gxra_ 325 SGDKKATVYEV 335 (337)
T ss_dssp ETTSCEEEEEE
T ss_pred eCCCeEEEEEE
Confidence 99999999997
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=6.7e-32 Score=301.62 Aligned_cols=270 Identities=16% Similarity=0.242 Sum_probs=224.3
Q ss_pred ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 001349 805 LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVW 882 (1094)
Q Consensus 805 ~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vW 882 (1094)
..+++.||.+.|++++|+|+ +|+||+.||+|+|||+.++ ..+..+..|...|++++|+|+++++++|+.|+++++|
T Consensus 47 ~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~--~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~ 124 (340)
T d1tbga_ 47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT--NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTT--EEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred eeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccc--eeEEEEecccccEEeeEeeccceeeeeecccceeecc
Confidence 45678999999999999997 9999999999999999999 7889999999999999999999999999999999999
Q ss_pred ECCCCce--EEEEe-cccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC------------CCCceEEEEeC--
Q 001349 883 SIGNEEI--HCVQV-HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS------------SKYPKCLALVQ-- 945 (1094)
Q Consensus 883 di~~~~~--~~~~~-~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~------------~~~v~~l~~s~-- 945 (1094)
+...... ..... ..+....... +...+..+.....+.....+.. ...+....+.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (340)
T d1tbga_ 125 NLKTREGNVRVSRELAGHTGYLSCC--------RFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT 196 (340)
T ss_dssp ESSSSCSCCCEEEEECCCSSCEEEE--------EEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTS
T ss_pred cccccccccccceeccccccccccc--------ccccccccccccccccccccccccccccccccccceeEeeecccccc
Confidence 9876541 11111 1222222221 3334444555555555444432 34455555553
Q ss_pred CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec---C
Q 001349 946 GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---T 1022 (1094)
Q Consensus 946 ~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~---~ 1022 (1094)
..+++|+.|+.|++||+++++.. ..+.+|...|++++|+|++.++++++.|| .|++||+........+. +
T Consensus 197 ~~~~~~~~d~~v~i~d~~~~~~~------~~~~~h~~~i~~v~~~p~~~~l~s~s~d~-~i~~~~~~~~~~~~~~~~~~~ 269 (340)
T d1tbga_ 197 RLFVSGACDASAKLWDVREGMCR------QTFTGHESDINAICFFPNGNAFATGSDDA-TCRLFDLRADQELMTYSHDNI 269 (340)
T ss_dssp SEEEEEETTTEEEEEETTTTEEE------EEECCCSSCEEEEEECTTSSEEEEEETTS-CEEEEETTTTEEEEEECCTTC
T ss_pred ceeEEeecCceEEEEECCCCcEE------EEEeCCCCCeEEEEECCCCCEEEEEeCCC-eEEEEeecccccccccccccc
Confidence 56899999999999999999887 56678999999999999999999999997 99999999998887775 5
Q ss_pred CCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1023 LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1023 ~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
...+.+++|+|+ ++++|+.||.|++||+.+++++..+ .+|.+.|++++|+||+++|+||+.||+|+|||
T Consensus 270 ~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL-AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEE-cCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 677999999998 8999999999999999999999999 58999999999999999999999999999997
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.1e-32 Score=299.54 Aligned_cols=276 Identities=21% Similarity=0.309 Sum_probs=241.1
Q ss_pred EEeCC-cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeC
Q 001349 799 FWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSL 875 (1094)
Q Consensus 799 vWd~~-~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~ 875 (1094)
.|... .....+.||.+.|++++|+|+ +|+||+.||+|+|||+.++ +.+.++.+|.+.|++++|+|++.++++++.
T Consensus 2 ~w~p~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~--~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~ 79 (317)
T d1vyhc1 2 EWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--DFERTLKGHTDSVQDISFDHSGKLLASCSA 79 (317)
T ss_dssp CCCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC--CCCEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ccCCCCCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC--CEEEEEeCCCCcEEEEeeeccccccccccc
Confidence 46554 345678999999999999996 9999999999999999998 788899999999999999999999999999
Q ss_pred CCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC------------CCCceEEEE
Q 001349 876 DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS------------SKYPKCLAL 943 (1094)
Q Consensus 876 DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~------------~~~v~~l~~ 943 (1094)
++++.+|+..... .......+...+..+. |+|++..+++...++.+.+|+. ...+.++.+
T Consensus 80 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (317)
T d1vyhc1 80 DMTIKLWDFQGFE-CIRTMHGHDHNVSSVS-------IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP 151 (317)
T ss_dssp TSCCCEEETTSSC-EEECCCCCSSCEEEEE-------ECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred ccccccccccccc-cccccccccccceeee-------ccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeec
Confidence 9999999998865 2333344556666666 9999999999999999999974 345778888
Q ss_pred eC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCc--------------------cEEEEEEC
Q 001349 944 VQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL--------------------VYTASTSL 1001 (1094)
Q Consensus 944 s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~--------------------~~las~s~ 1001 (1094)
++ ..+++|+.||.|++|++.++... ..+.+|...+.++.|+++. .++++++.
T Consensus 152 ~~~~~~l~~~~~d~~v~~~~~~~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (317)
T d1vyhc1 152 NQDGTLIASCSNDQTVRVWVVATKECK------AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 225 (317)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEE------EEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET
T ss_pred ccCCCEEEEEeCCCeEEEEeeccceee------EEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccC
Confidence 75 56999999999999999999877 4556778888888887643 46788888
Q ss_pred CCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCE
Q 001349 1002 DGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEF 1078 (1094)
Q Consensus 1002 Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~ 1078 (1094)
|+ .|++||+.+++++.++. |...|.+++++|+ ++++|+.||.|++||+.+++++.++ .+|.+.|++++|+|++++
T Consensus 226 d~-~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~h~~~V~~~~~s~~~~~ 303 (317)
T d1vyhc1 226 DK-TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL-NAHEHFVTSLDFHKTAPY 303 (317)
T ss_dssp TS-EEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE-ECCSSCEEEEEECSSSSC
T ss_pred CC-EEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEE-cCCCCCEEEEEEcCCCCE
Confidence 86 99999999999999888 7788999999998 8999999999999999999999999 589999999999999999
Q ss_pred EEEEeCCCcEEEEe
Q 001349 1079 LVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1079 L~sgs~DG~I~iWd 1092 (1094)
|++|+.||+|+|||
T Consensus 304 l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 304 VVTGSVDQTVKVWE 317 (317)
T ss_dssp EEEEETTSEEEEEC
T ss_pred EEEEeCCCeEEEeC
Confidence 99999999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.3e-31 Score=299.65 Aligned_cols=274 Identities=13% Similarity=0.118 Sum_probs=226.2
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecc
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIRE 853 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~ 853 (1094)
..++.+++..++.++ ++.|.+|+.. .....+.+|.+.|++++|+|+ +|++|+.||+|+|||+.++.......+.+
T Consensus 22 ~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~ 100 (311)
T d1nr0a1 22 VLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPV 100 (311)
T ss_dssp CCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEEC
T ss_pred EEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccccccccc
Confidence 456678899998875 5679999997 456778899999999999996 99999999999999999885455567889
Q ss_pred cCCCeEEEEEecCCCEEEEEeC--CCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEE
Q 001349 854 HTKAVTGLAILQSGEMLYSGSL--DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKL 931 (1094)
Q Consensus 854 H~~~V~sv~fspdg~~LaSgs~--DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l 931 (1094)
|.+.|.+++|+|++++|++++. ++.++||++++++.. .....+...|.++. |+|++..
T Consensus 101 ~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~-~~l~~h~~~v~~v~-------~~~~~~~------------ 160 (311)
T d1nr0a1 101 FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSN-GNLTGQARAMNSVD-------FKPSRPF------------ 160 (311)
T ss_dssp SSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBC-BCCCCCSSCEEEEE-------ECSSSSC------------
T ss_pred ccCcccccccccccccccccccccccccccccccccccc-cccccccccccccc-------cccccee------------
Confidence 9999999999999999999986 466999999987522 12233456676666 7777664
Q ss_pred EcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEEC
Q 001349 932 LNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWST 1011 (1094)
Q Consensus 932 ~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~ 1011 (1094)
.+++|+.||.|++||+++++.. ..+.+|..+|+++.|+|++.++++++.|+ .|++||.
T Consensus 161 ---------------~l~sgs~d~~i~i~d~~~~~~~------~~~~~~~~~i~~v~~~p~~~~l~~~~~d~-~v~~~d~ 218 (311)
T d1nr0a1 161 ---------------RIISGSDDNTVAIFEGPPFKFK------STFGEHTKFVHSVRYNPDGSLFASTGGDG-TIVLYNG 218 (311)
T ss_dssp ---------------EEEEEETTSCEEEEETTTBEEE------EEECCCSSCEEEEEECTTSSEEEEEETTS-CEEEEET
T ss_pred ---------------eecccccccccccccccccccc------cccccccccccccccCccccccccccccc-ccccccc
Confidence 3788999999999999998876 45667899999999999999999999997 9999999
Q ss_pred CCCeEEEEec--------CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEE
Q 001349 1012 SNYNMVGSLP--------TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVI 1081 (1094)
Q Consensus 1012 ~~~~~~~~~~--------~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~s 1081 (1094)
.++.....+. |...|++++|+|+ ++++|+.||+|+|||+.+++++.++..++......+.+.++++.|++
T Consensus 219 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s 298 (311)
T d1nr0a1 219 VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVS 298 (311)
T ss_dssp TTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEE
T ss_pred ccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEE
Confidence 9998887764 4578999999987 99999999999999999999999985433322333334445667999
Q ss_pred EeCCCcEEEEeCC
Q 001349 1082 GTSDGRIQAWGLS 1094 (1094)
Q Consensus 1082 gs~DG~I~iWdls 1094 (1094)
++.||.|++||..
T Consensus 299 ~s~dG~i~~wd~d 311 (311)
T d1nr0a1 299 ISANGFINFVNPE 311 (311)
T ss_dssp EETTCCEEEEETT
T ss_pred EECCCEEEEEeCC
Confidence 9999999999973
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.4e-31 Score=303.28 Aligned_cols=293 Identities=18% Similarity=0.291 Sum_probs=235.8
Q ss_pred EEEeeCCCCeEEEeCCc------ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEec-------
Q 001349 788 VLSNGHDSSADFWNHRE------LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIR------- 852 (1094)
Q Consensus 788 l~s~s~dg~I~vWd~~~------~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~------- 852 (1094)
.+.+..++...+|+... .+....+|++.|+|++|+|| +|++|+ ||+|+|||+.++ ..+..+.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~--~~~~~~~~~~~~~~ 107 (388)
T d1erja_ 31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDG--SLVARLSDDSAANK 107 (388)
T ss_dssp TSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTC--CEEEEECC------
T ss_pred ccccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEeccc--ceEeeecccccccc
Confidence 34567788888999751 12233469999999999997 888886 899999999988 4554443
Q ss_pred -----------ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEE
Q 001349 853 -----------EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIK 921 (1094)
Q Consensus 853 -----------~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~ 921 (1094)
+|...|++++|+|+|++|++|+.||+|++||...++. ......+...|.++. +++++..++
T Consensus 108 ~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~-~~~~~~h~~~v~~~~-------~~~~~~~~~ 179 (388)
T d1erja_ 108 DPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI-VMILQGHEQDIYSLD-------YFPSGDKLV 179 (388)
T ss_dssp -----------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEE-------ECTTSSEEE
T ss_pred cccccccccccCCCCCEEEEEECCCCCcceeccccccccccccccccc-ccccccccccccccc-------ccccccccc
Confidence 4677799999999999999999999999999998753 233345677888887 899999999
Q ss_pred EEEeCCeEEEEcCCC-----------CceEEEEeC---CEEEEEEcCCeEEEEECCCCceeEEecc-ceeecCCCCCeEE
Q 001349 922 VHLRNGKTKLLNSSK-----------YPKCLALVQ---GKVYCGCQDGAIQEIDLATGTFATIQTG-HRKLLGKANPVHA 986 (1094)
Q Consensus 922 ~~~~~g~i~l~~~~~-----------~v~~l~~s~---~~l~sgs~Dg~I~iwDl~~~~~~~~~~~-~~~~~~h~~~V~s 986 (1094)
.+..++.+++|+... ...++.+.+ ..+++|+.||.|++||..++.....+.. .....+|...|++
T Consensus 180 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 259 (388)
T d1erja_ 180 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS 259 (388)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEE
T ss_pred ccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEE
Confidence 999999999998643 334444442 4689999999999999999987755432 2345678999999
Q ss_pred EEEeCCccEEEEEECCCCEEEEEECCCCeEE------------EE-ecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECC
Q 001349 987 LQVHNGLVYTASTSLDGAAVKMWSTSNYNMV------------GS-LPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQK 1051 (1094)
Q Consensus 987 l~fs~~~~~las~s~Dg~~I~iwd~~~~~~~------------~~-~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~ 1051 (1094)
++|++++.++++++.|| .|++||+.++... .. ..|...|.+++|+|+ ++++|+.||.|++||+.
T Consensus 260 l~~s~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~ 338 (388)
T d1erja_ 260 VVFTRDGQSVVSGSLDR-SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 338 (388)
T ss_dssp EEECTTSSEEEEEETTS-EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETT
T ss_pred EEECCCCCEEEEEECCC-cEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 99999999999999997 9999999765432 22 226788999999988 89999999999999999
Q ss_pred CCcEEEEecccCCcceEEEEE------cCCCCEEEEEeCCCcEEEEeC
Q 001349 1052 RQIRIETLQTGTSGKVQCMAL------DDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1052 t~~~~~~l~~~h~~~I~~l~~------Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
+++++.++ .+|.+.|+++++ +|++++|+||+.||+|+||++
T Consensus 339 ~~~~~~~l-~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~ 385 (388)
T d1erja_ 339 SGNPLLML-QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385 (388)
T ss_dssp TCCEEEEE-ECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred CCcEEEEE-eCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEee
Confidence 99999999 589999999975 678999999999999999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=8.5e-30 Score=283.51 Aligned_cols=300 Identities=22% Similarity=0.337 Sum_probs=245.7
Q ss_pred HhhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeE
Q 001349 771 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLI 848 (1094)
Q Consensus 771 ~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~ 848 (1094)
+|...+. +.++++|++|+||+.||+|+|||.. +....+.+|.+.|.+++|++++|++|+.||++++|+.... ...
T Consensus 14 GH~~~V~-s~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~~l~s~s~D~~~~~~~~~~~--~~~ 90 (342)
T d2ovrb2 14 GHDDHVI-TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETG--ECI 90 (342)
T ss_dssp CSTTSCE-EEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT--EEE
T ss_pred CcCCceE-EEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCCccccceecccccccccccc--cce
Confidence 3444332 3588899999999999999999987 5677889999999999999999999999999999999887 555
Q ss_pred EEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCe
Q 001349 849 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGK 928 (1094)
Q Consensus 849 ~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~ 928 (1094)
.....+...+....+ .+..+..+..|+++.+|+..+++........ ... ...+.+....++.+..++.
T Consensus 91 ~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~--~~~--------~~~~~~~~~~~~~~~~d~~ 158 (342)
T d2ovrb2 91 HTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGH--VAA--------VRCVQYDGRRVVSGAYDFM 158 (342)
T ss_dssp EEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEESSSCCEEEEEECC--SSC--------EEEEEECSSCEEEEETTSC
T ss_pred ecccccceeEeeeec--ccccccccccceeEEEeecccccceeeeecc--ccc--------ceeeccccceeeeecCCCe
Confidence 566666666666554 4567889999999999999988643332221 111 1225667778888888899
Q ss_pred EEEEcC------------CCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEE
Q 001349 929 TKLLNS------------SKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYT 996 (1094)
Q Consensus 929 i~l~~~------------~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~l 996 (1094)
+++|+. ...+.++.+.+..+++|+.||.|++||+..++.+ ..+.+|...+.++.++++ ++
T Consensus 159 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~------~~~~~~~~~v~~~~~~~~--~l 230 (342)
T d2ovrb2 159 VKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCI------HTLTGHQSLTSGMELKDN--IL 230 (342)
T ss_dssp EEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEE------EEECCCCSCEEEEEEETT--EE
T ss_pred EEEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceee------eEecccccceeEEecCCC--EE
Confidence 988874 3445666677788999999999999999999887 566778889999888764 78
Q ss_pred EEEECCCCEEEEEECCCCeEEEEec----CCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEec----ccCCcceE
Q 001349 997 ASTSLDGAAVKMWSTSNYNMVGSLP----TLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQ----TGTSGKVQ 1068 (1094)
Q Consensus 997 as~s~Dg~~I~iwd~~~~~~~~~~~----~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~----~~h~~~I~ 1068 (1094)
++++.|+ .|++||....+....+. |...+.++.++++++++|+.||+|++||+.+++.+..+. .+|.+.|+
T Consensus 231 ~s~s~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~ 309 (342)
T d2ovrb2 231 VSGNADS-TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVW 309 (342)
T ss_dssp EEEETTS-CEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEE
T ss_pred EEEcCCC-EEEEEecccccccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEE
Confidence 8999886 99999999988877775 457789999999999999999999999999999988874 35777899
Q ss_pred EEEEcCCCCEEEEEeCCCc----EEEEeCC
Q 001349 1069 CMALDDNEEFLVIGTSDGR----IQAWGLS 1094 (1094)
Q Consensus 1069 ~l~~Spdg~~L~sgs~DG~----I~iWdls 1094 (1094)
+++|+|++.+|++|+.||+ |++||+.
T Consensus 310 ~v~~s~~~~~la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 310 RIRASNTKLVCAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp EEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred EEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence 9999999999999999996 9999984
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=1.2e-30 Score=291.99 Aligned_cols=303 Identities=14% Similarity=0.189 Sum_probs=228.7
Q ss_pred ccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEec--c
Q 001349 779 SPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIR--E 853 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~--~ 853 (1094)
+.+.+++++|+||+.||+|+|||.. +....+.+|.+.|++++|+|+ +|++|+.||+|++|+.... ....... .
T Consensus 17 tc~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~--~~~~~~~~~~ 94 (355)
T d1nexb2 17 TCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKG--CCTHVFEGHN 94 (355)
T ss_dssp EEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETTTT--EEEEEECCCS
T ss_pred EEEEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEEEEEeccccccccccccc--cccccccccc
Confidence 3578899999999999999999987 567788899999999999997 9999999999999999988 4444443 3
Q ss_pred cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCc------------cceeeee-cCceEEEeeCCCeE
Q 001349 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKD------------QIQNLAV-SNSILCFIPQGAGI 920 (1094)
Q Consensus 854 H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~------------~V~~v~~-~~~~~~fspdg~~l 920 (1094)
+...+....+++++.++++++.|++|++||+.++............ .+..... ......+.++++.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 174 (355)
T d1nexb2 95 STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIV 174 (355)
T ss_dssp SCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEE
T ss_pred ccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccccccccccee
Confidence 4444566778889999999999999999999876421111110000 0000000 11234577889999
Q ss_pred EEEEeCCeEEEEcCC------------CCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEE
Q 001349 921 KVHLRNGKTKLLNSS------------KYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHA 986 (1094)
Q Consensus 921 ~~~~~~g~i~l~~~~------------~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~s 986 (1094)
+.+..++.+++|+.. ..+.++.+++ ..+++++.||.|++||..++... ..+.+|...|.+
T Consensus 175 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~------~~~~~h~~~v~~ 248 (355)
T d1nexb2 175 VSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM------YTLQGHTALVGL 248 (355)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEE------EEECCCSSCCCE
T ss_pred eeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccc------cccccccccccc
Confidence 999999999999853 3455666664 57999999999999999999887 566789999999
Q ss_pred EEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEecccCCc
Q 001349 987 LQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGTSG 1065 (1094)
Q Consensus 987 l~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~ 1065 (1094)
+.+++ .++++++.|| .|++||++++.......+........++++ .+++++.||.|+|||+++++++.....+|.+
T Consensus 249 ~~~~~--~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~ 325 (355)
T d1nexb2 249 LRLSD--KFLVSAAADG-SIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDAD 325 (355)
T ss_dssp EEECS--SEEEEECTTS-EEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTTTTCS
T ss_pred ccccc--ceeeeeeccc-ccccccccccceecccccCCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEecCCCC
Confidence 99975 4788888887 999999998876655544333333344544 4444556899999999999988765568999
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEE--EeC
Q 001349 1066 KVQCMALDDNEEFLVIGTSDGRIQA--WGL 1093 (1094)
Q Consensus 1066 ~I~~l~~Spdg~~L~sgs~DG~I~i--Wdl 1093 (1094)
.|++++|+|+ .++++++.||+++| ||+
T Consensus 326 ~V~~v~~~~~-~~~~~~s~dg~~~l~~~df 354 (355)
T d1nexb2 326 QIWSVNFKGK-TLVAAVEKDGQSFLEILDF 354 (355)
T ss_dssp EEEEEEEETT-EEEEEEESSSCEEEEEEEC
T ss_pred CEEEEEEcCC-eEEEEEECCCcEEEEEEeC
Confidence 9999999986 47888999998655 554
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=3.8e-30 Score=294.77 Aligned_cols=284 Identities=13% Similarity=0.088 Sum_probs=223.1
Q ss_pred hccccccccccCcEEEEeeCCCCeEEEeCC----cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCccee
Q 001349 774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHL 847 (1094)
Q Consensus 774 ~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~----~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~ 847 (1094)
+.+...++++++.++++|+.||.|+|||.. .....+.+|.++|++++|+|+ +|++|+.||+|+|||+.++....
T Consensus 8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~ 87 (371)
T d1k8kc_ 8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP 87 (371)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccc
Confidence 446677888999999999999999999986 245667899999999999986 99999999999999999886666
Q ss_pred EEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceE---EEEecccCccceeeeecCceEEEeeCCCeEEEEE
Q 001349 848 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIH---CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHL 924 (1094)
Q Consensus 848 ~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~---~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~ 924 (1094)
...+.+|...|++++|+|++++|++|+.|++|++|++...... ......+...|.++. |+|+|+.
T Consensus 88 ~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~-------~~p~~~~----- 155 (371)
T d1k8kc_ 88 TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLD-------WHPNSVL----- 155 (371)
T ss_dssp EEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEE-------ECTTSSE-----
T ss_pred ccccccccccccccccccccccceeecccCcceeeeeeccccccccccccccccccccccc-------ccccccc-----
Confidence 7778899999999999999999999999999999998775421 112234556666666 7777764
Q ss_pred eCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEe------------ccceeecCCCCCeEEEEEeCC
Q 001349 925 RNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQ------------TGHRKLLGKANPVHALQVHNG 992 (1094)
Q Consensus 925 ~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~------------~~~~~~~~h~~~V~sl~fs~~ 992 (1094)
+++|+.||+|++||.......... .......+|...|++++|+|+
T Consensus 156 -----------------------l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 212 (371)
T d1k8kc_ 156 -----------------------LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN 212 (371)
T ss_dssp -----------------------EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS
T ss_pred -----------------------eeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecc
Confidence 778888888888887654321100 001344678889999999999
Q ss_pred ccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC-EEEEEEcCCeEEEEECC--CCcEEE-----------
Q 001349 993 LVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQK--RQIRIE----------- 1057 (1094)
Q Consensus 993 ~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~--t~~~~~----------- 1057 (1094)
+.++++++.|+ .|++||+.++..+..+. |..+|.+++|+|| .+++++.|+.+++|+.. .+....
T Consensus 213 g~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (371)
T d1k8kc_ 213 GSRVAWVSHDS-TVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSS 291 (371)
T ss_dssp SSEEEEEETTT-EEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC----
T ss_pred cccccccccCC-cceEEeeecccceeeeecccccceeeeecCCCCEEEEEcCCceEEEEeeCCCceEEEeeeecCccccc
Confidence 99999999986 99999999999988888 6778999999998 55556667776665432 221110
Q ss_pred ---------------------------EecccCCcceEEEEEcCCC----CEEEEEeCCCcEEEEeC
Q 001349 1058 ---------------------------TLQTGTSGKVQCMALDDNE----EFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1058 ---------------------------~l~~~h~~~I~~l~~Spdg----~~L~sgs~DG~I~iWdl 1093 (1094)
.+...|.+.|+++++.+.+ ..|+|+|.||+|++||+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~ 358 (371)
T d1k8kc_ 292 QRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358 (371)
T ss_dssp ----CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred cccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeC
Confidence 0112388899999998755 36899999999999997
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=5.5e-30 Score=282.71 Aligned_cols=272 Identities=17% Similarity=0.255 Sum_probs=214.6
Q ss_pred ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEe-cccCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 001349 805 LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQI-REHTKAVTGLAILQSGEMLYSGSLDKTARV 881 (1094)
Q Consensus 805 ~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l-~~H~~~V~sv~fspdg~~LaSgs~DgtI~v 881 (1094)
..+++.||.+.|++++|+|+ +|+||+.||+|++||+.++ +++..+ .+|...|++++|+|+|.+ ++++.|+++++
T Consensus 4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~--~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~ 80 (299)
T d1nr0a2 4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG--ISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKV 80 (299)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEE
T ss_pred cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCC--cEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEE
Confidence 46788999999999999997 9999999999999999998 667776 479999999999999875 56677999999
Q ss_pred EECCCCceEE--EEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC--------CCCceEEEEeC--CEEE
Q 001349 882 WSIGNEEIHC--VQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS--------SKYPKCLALVQ--GKVY 949 (1094)
Q Consensus 882 Wdi~~~~~~~--~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~--------~~~v~~l~~s~--~~l~ 949 (1094)
|+........ .....+...+..+. |+|+|..++.. .++.+.+|+. ...+.++++++ ..++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~s~~g~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 152 (299)
T d1nr0a2 81 VPAGGSGVDSSKAVANKLSSQPLGLA-------VSADGDIAVAA-CYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVA 152 (299)
T ss_dssp ECSSSSSSCTTSCCEEECSSCEEEEE-------ECTTSSCEEEE-ESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEE
T ss_pred eccCCccccccccccccccccccccc-------ccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence 9987643111 11112334455554 89999876654 4567788874 34678888876 4689
Q ss_pred EEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEe---c-CCCC
Q 001349 950 CGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL---P-TLSE 1025 (1094)
Q Consensus 950 sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~---~-~~~~ 1025 (1094)
+|+.||.|++||+.++.... .....|...|++++|+|++.++++++.|+ .|++||+.++...... . |...
T Consensus 153 ~g~~dg~i~~~d~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~~~~~~~~~~~~~~~~~~~h~~~ 226 (299)
T d1nr0a2 153 VGGQDSKVHVYKLSGASVSE-----VKTIVHPAEITSVAFSNNGAFLVATDQSR-KVIPYSVANNFELAHTNSWTFHTAK 226 (299)
T ss_dssp EEETTSEEEEEEEETTEEEE-----EEEEECSSCEEEEEECTTSSEEEEEETTS-CEEEEEGGGTTEESCCCCCCCCSSC
T ss_pred cccccccccccccccccccc-----ccccccccccccccccccccccccccccc-ccccccccccccccccccccccccc
Confidence 99999999999998877543 23456888999999999999999999987 9999999887655433 2 6788
Q ss_pred EEEEEEeCC--EEEEEEcCCeEEEEECCCCcEE--EEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1026 VRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRI--ETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1026 v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~--~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
|++++|+|+ ++++|+.||.|++||+.++... .....++...|.++.| +++++|++|+.||+|++||++
T Consensus 227 v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 227 VACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred cccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence 999999998 8999999999999999876533 3332234456777755 567899999999999999985
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.2e-28 Score=275.65 Aligned_cols=269 Identities=18% Similarity=0.232 Sum_probs=219.6
Q ss_pred eeecccCCCcE-EEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 001349 806 VHVDSSENGKV-LSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSI 884 (1094)
Q Consensus 806 ~~~~~~h~~~V-~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi 884 (1094)
..++.||.+.| +|++|++++|+||+.||+|+|||+.++ +++.++.+|.+.|++++|+|+ .+|++|+.||+|++|++
T Consensus 5 ~~tL~GH~~~vitc~~~~~~~l~tgs~Dg~i~vWd~~~~--~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~ 81 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINK--KFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDI 81 (355)
T ss_dssp EEEEECCSSSCEEEEEEETTEEEEEETTTEEEEEETTTT--EEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEET
T ss_pred cEEECCcCCCcEEEEEECCCEEEEEeCCCeEEEEECCCC--cEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccc
Confidence 46788998874 889999999999999999999999999 889999999999999999985 58999999999999999
Q ss_pred CCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCC----------------------------
Q 001349 885 GNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSK---------------------------- 936 (1094)
Q Consensus 885 ~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~---------------------------- 936 (1094)
..+.......... ...... ...+.+++..++.+..++.+++|+...
T Consensus 82 ~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (355)
T d1nexb2 82 KKGCCTHVFEGHN-STVRCL-----DIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG 155 (355)
T ss_dssp TTTEEEEEECCCS-SCEEEE-----EEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEE
T ss_pred ccccccccccccc-cccccc-----ccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceee
Confidence 9875333222211 111111 123778889999999999999998521
Q ss_pred -------CceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEE
Q 001349 937 -------YPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMW 1009 (1094)
Q Consensus 937 -------~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iw 1009 (1094)
.+.+....++.+++++.|+.|++||+.+++.. ....++...+.++.|++++.++++++.|+ .|++|
T Consensus 156 ~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~i~i~ 228 (355)
T d1nexb2 156 VLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCL------YILSGHTDRIYSTIYDHERKRCISASMDT-TIRIW 228 (355)
T ss_dssp EEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEE------EEECCCSSCEEEEEEETTTTEEEEEETTS-CEEEE
T ss_pred eeeeccccccccccccceeeeecccceeeeeecccccce------eeeeccccccccccccccceeeecccccc-eEEee
Confidence 23344445678999999999999999998876 45566778899999999999999999996 99999
Q ss_pred ECCCCeEEEEec-CCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEE-EEcCCCCEEEEEeCCCc
Q 001349 1010 STSNYNMVGSLP-TLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCM-ALDDNEEFLVIGTSDGR 1087 (1094)
Q Consensus 1010 d~~~~~~~~~~~-~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l-~~Spdg~~L~sgs~DG~ 1087 (1094)
|..++..+..+. |...|.+++++++++++|+.||.|++||+.++...... |...+.++ .|++++.++++| .||+
T Consensus 229 d~~~~~~~~~~~~h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~g-~d~~ 304 (355)
T d1nexb2 229 DLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSY---HHTNLSAITTFYVSDNILVSG-SENQ 304 (355)
T ss_dssp ETTTCCEEEEECCCSSCCCEEEECSSEEEEECTTSEEEEEETTTCCEEEEE---ECTTCCCCCEEEECSSEEEEE-ETTE
T ss_pred eccccccccccccccccccccccccceeeeeecccccccccccccceeccc---ccCCceEEEEEcCCCCEEEEE-eCCE
Confidence 999999999888 67889999999999999999999999999988766554 44445544 567777776665 5899
Q ss_pred EEEEeCC
Q 001349 1088 IQAWGLS 1094 (1094)
Q Consensus 1088 I~iWdls 1094 (1094)
|++||+.
T Consensus 305 i~vwd~~ 311 (355)
T d1nexb2 305 FNIYNLR 311 (355)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 9999973
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3e-28 Score=274.71 Aligned_cols=239 Identities=16% Similarity=0.254 Sum_probs=203.4
Q ss_pred cCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcc---eeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001349 811 SENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSIL---HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIG 885 (1094)
Q Consensus 811 ~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~---~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~ 885 (1094)
.|...|++++|+|+ +|+||+ ||+|+|||+.++.. .......+|.+.|++++|+|||++|++|+.||+|++||+.
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~ 127 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA 127 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccc
Confidence 79999999999997 999987 89999999976521 2334456899999999999999999999999999999998
Q ss_pred CCceEEEE-ecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCC
Q 001349 886 NEEIHCVQ-VHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT 964 (1094)
Q Consensus 886 ~~~~~~~~-~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~ 964 (1094)
........ ...+...+..+. |+|++. .+++++.|+.|++||+.+
T Consensus 128 ~~~~~~~~~~~~~~~~v~~~~-------~~~~~~----------------------------~l~s~~~d~~i~~~~~~~ 172 (337)
T d1gxra_ 128 APTPRIKAELTSSAPACYALA-------ISPDSK----------------------------VCFSCCSDGNIAVWDLHN 172 (337)
T ss_dssp CC--EEEEEEECSSSCEEEEE-------ECTTSS----------------------------EEEEEETTSCEEEEETTT
T ss_pred ccccccccccccccccccccc-------cccccc----------------------------cccccccccccccccccc
Confidence 75433322 233444555554 666655 478899999999999999
Q ss_pred CceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcC
Q 001349 965 GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKG 1042 (1094)
Q Consensus 965 ~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~d 1042 (1094)
++.. ....+|...|++++|++++..+++++.|+ .+++||+++++.+..+.+...|.+++|+|+ ++++|+.|
T Consensus 173 ~~~~------~~~~~~~~~v~~l~~s~~~~~~~~~~~d~-~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d 245 (337)
T d1gxra_ 173 QTLV------RQFQGHTDGASCIDISNDGTKLWTGGLDN-TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMES 245 (337)
T ss_dssp TEEE------EEECCCSSCEEEEEECTTSSEEEEEETTS-EEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred cccc------ccccccccccccccccccccccccccccc-cccccccccceeecccccccceEEEEEcccccccceeccc
Confidence 8876 45667889999999999999999999996 999999999999999999999999999988 89999999
Q ss_pred CeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1043 GTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1043 g~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
|.|++||+.+++..... .|.+.|++++|+|+|++|++|+.||+|++||+.
T Consensus 246 ~~i~i~d~~~~~~~~~~--~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~ 295 (337)
T d1gxra_ 246 SNVEVLHVNKPDKYQLH--LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp SCEEEEETTSSCEEEEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ccccccccccccccccc--ccccccceEEECCCCCEEEEEeCCCeEEEEECC
Confidence 99999999998876544 689999999999999999999999999999973
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.3e-27 Score=259.38 Aligned_cols=261 Identities=22% Similarity=0.339 Sum_probs=209.9
Q ss_pred eeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001349 806 VHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIG 885 (1094)
Q Consensus 806 ~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~ 885 (1094)
++....|...|+|++|++++|+||+.||+|+|||+.++ +++.++.+|.+.|++++| ++++|+||+.||+|++|++.
T Consensus 8 i~~~~~~~~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~--~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~ 83 (293)
T d1p22a2 8 IHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTL--ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN 83 (293)
T ss_dssp EECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSC--CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred EeccCCCCCCEEEEEEcCCEEEEEeCCCeEEEEECCCC--cEEEEEecCCCCEeeeec--ccceeecccccccccccccc
Confidence 34456788899999988889999999999999999988 788999999999998876 67899999999999999999
Q ss_pred CCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC---------------CCCceEEEEeCCEEEE
Q 001349 886 NEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS---------------SKYPKCLALVQGKVYC 950 (1094)
Q Consensus 886 ~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~---------------~~~v~~l~~s~~~l~s 950 (1094)
.+......... ... . ..+.+....++....++.+.+|+. ...+.++.+.+..+++
T Consensus 84 ~~~~~~~~~~~-~~~--~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 153 (293)
T d1p22a2 84 TGEMLNTLIHH-CEA--V-------LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVS 153 (293)
T ss_dssp SCCEEEEECCC-CSC--E-------EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEE
T ss_pred ccccccccccc-ccc--c-------ccccccccceeecccccceeEeeccccccccccccccccccccccceeccccccc
Confidence 87533332221 111 1 124555666777777777777763 3456777778888999
Q ss_pred EEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEE
Q 001349 951 GCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAM 1029 (1094)
Q Consensus 951 gs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l 1029 (1094)
++.|+.|++||+.+++.+ ..+.+|...+..+.+++ .++++++.|+ +|++||++++..+..+. +...+..+
T Consensus 154 ~s~d~~i~~~d~~~~~~~------~~~~~~~~~v~~~~~~~--~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~v~~~ 224 (293)
T d1p22a2 154 ASGDRTIKVWNTSTCEFV------RTLNGHKRGIACLQYRD--RLVVSGSSDN-TIRLWDIECGACLRVLEGHEELVRCI 224 (293)
T ss_dssp EETTSEEEEEETTTCCEE------EEEECCSSCEEEEEEET--TEEEEEETTS-CEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred ccCCCceeeecCCCCcEE------EEEcccccccccccCCC--CeEEEecCCC-EEEEEecccceeeeeecccceeeeec
Confidence 999999999999999887 45667778888887764 4688888886 99999999999988887 56667777
Q ss_pred EEeCCEEEEEEcCCeEEEEECCC---------CcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1030 VVSSELVYLGCKGGTVEIWDQKR---------QIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1030 ~~spd~l~sgs~dg~I~vwd~~t---------~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
...+.++++|+.||.|++||+.+ ...+..+ .+|.+.|++++|+ +++|+||+.||+|++||
T Consensus 225 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 225 RFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL-VEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp ECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE-CCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred cccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEe-cCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence 77777999999999999999643 3467777 5899999999994 67899999999999998
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=4.8e-28 Score=265.73 Aligned_cols=263 Identities=19% Similarity=0.308 Sum_probs=229.4
Q ss_pred HHhhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcc
Q 001349 770 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSIL 845 (1094)
Q Consensus 770 ~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~ 845 (1094)
++|...+....+.+++.+|+||+.||+|+|||+. .....+.+|.+.|.+++|+++ ++++++.++++.+|+....
T Consensus 14 ~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 91 (317)
T d1vyhc1 14 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF-- 91 (317)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS--
T ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccccc--
Confidence 4555666677788899999999999999999987 566778899999999999996 9999999999999999888
Q ss_pred eeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEe
Q 001349 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLR 925 (1094)
Q Consensus 846 ~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~ 925 (1094)
.....+.+|...+.++.|+|+++.+++++.|+++++||+.++... .....+...+..+. |++++..+++++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~l~~~~~ 163 (317)
T d1vyhc1 92 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV-KTFTGHREWVRMVR-------PNQDGTLIASCSN 163 (317)
T ss_dssp CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE-EEEECCSSCEEEEE-------ECTTSSEEEEEET
T ss_pred ccccccccccccceeeeccCCCceEEeeccCcceeEeecccceee-eEEccCCCcceeee-------cccCCCEEEEEeC
Confidence 677788899999999999999999999999999999999988632 22334566677776 9999999999999
Q ss_pred CCeEEEEcCC------------CCceEEEEeC----------------------CEEEEEEcCCeEEEEECCCCceeEEe
Q 001349 926 NGKTKLLNSS------------KYPKCLALVQ----------------------GKVYCGCQDGAIQEIDLATGTFATIQ 971 (1094)
Q Consensus 926 ~g~i~l~~~~------------~~v~~l~~s~----------------------~~l~sgs~Dg~I~iwDl~~~~~~~~~ 971 (1094)
++.+++|+.. ..+.++.+.+ ..+++|+.||.|++||+.+++.+
T Consensus 164 d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~--- 240 (317)
T d1vyhc1 164 DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL--- 240 (317)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE---
T ss_pred CCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEE---
Confidence 9999999743 3456666542 24889999999999999999887
Q ss_pred ccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEE
Q 001349 972 TGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIW 1048 (1094)
Q Consensus 972 ~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vw 1048 (1094)
..+.+|...|.+++|+|++.++++++.|| .|++||+.+++++..+. |...|++++|+|+ +|++|+.||+|+||
T Consensus 241 ---~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iW 316 (317)
T d1vyhc1 241 ---MTLVGHDNWVRGVLFHSGGKFILSCADDK-TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316 (317)
T ss_dssp ---EEEECCSSCEEEEEECSSSSCEEEEETTT-EEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred ---EEEeCCCCCEEEEEECCCCCEEEEEECCC-eEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEe
Confidence 56678899999999999999999999997 99999999999999998 7889999999998 89999999999999
Q ss_pred E
Q 001349 1049 D 1049 (1094)
Q Consensus 1049 d 1049 (1094)
|
T Consensus 317 d 317 (317)
T d1vyhc1 317 E 317 (317)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.96 E-value=3e-28 Score=278.80 Aligned_cols=240 Identities=15% Similarity=0.157 Sum_probs=201.1
Q ss_pred CCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceE
Q 001349 813 NGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIH 890 (1094)
Q Consensus 813 ~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~ 890 (1094)
..+|+|++|+|| +|++|+.||.|+|||..+++...+..+++|.+.|++++|+|++++|++|+.|++|+|||+.++...
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~ 86 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK 86 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence 478999999997 999999999999999998876788899999999999999999999999999999999999987644
Q ss_pred EEE-ecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeE
Q 001349 891 CVQ-VHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFAT 969 (1094)
Q Consensus 891 ~~~-~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~ 969 (1094)
... ...+...|.++. |+|+++. +++|+.|+.|++|++.......
T Consensus 87 ~~~~~~~~~~~v~~i~-------~~p~~~~----------------------------l~~~s~d~~i~i~~~~~~~~~~ 131 (371)
T d1k8kc_ 87 PTLVILRINRAARCVR-------WAPNEKK----------------------------FAVGSGSRVISICYFEQENDWW 131 (371)
T ss_dssp EEEECCCCSSCEEEEE-------ECTTSSE----------------------------EEEEETTSSEEEEEEETTTTEE
T ss_pred cccccccccccccccc-------ccccccc----------------------------ceeecccCcceeeeeecccccc
Confidence 333 344566777776 7777764 7889999999999987765443
Q ss_pred EeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCC------------------eEEEEec-CCCCEEEEE
Q 001349 970 IQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY------------------NMVGSLP-TLSEVRAMV 1030 (1094)
Q Consensus 970 ~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~------------------~~~~~~~-~~~~v~~l~ 1030 (1094)
... ....+|...|.+++|+|++.++++++.|+ +|++||.... ....... |...|.+++
T Consensus 132 ~~~--~~~~~~~~~v~~v~~~p~~~~l~s~s~D~-~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 208 (371)
T d1k8kc_ 132 VCK--HIKKPIRSTVLSLDWHPNSVLLAAGSCDF-KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVC 208 (371)
T ss_dssp EEE--EECTTCCSCEEEEEECTTSSEEEEEETTS-CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEE
T ss_pred ccc--ccccccccccccccccccccceeccccCc-EEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEE
Confidence 222 34567889999999999999999999997 9999998642 2333333 677899999
Q ss_pred EeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1031 VSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1031 ~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
|+|+ ++++++.||.|++||+.++..+..+ .+|..+|.+++|+||+++|++| .|+.+++|.
T Consensus 209 ~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~s~~fs~d~~~la~g-~d~~~~~~~ 270 (371)
T d1k8kc_ 209 FSANGSRVAWVSHDSTVCLADADKKMAVATL-ASETLPLLAVTFITESSLVAAG-HDCFPVLFT 270 (371)
T ss_dssp ECSSSSEEEEEETTTEEEEEEGGGTTEEEEE-ECSSCCEEEEEEEETTEEEEEE-TTSSCEEEE
T ss_pred eecccccccccccCCcceEEeeecccceeee-ecccccceeeeecCCCCEEEEE-cCCceEEEE
Confidence 9998 8999999999999999999999999 4888999999999999877765 477777765
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.96 E-value=8.4e-28 Score=268.47 Aligned_cols=239 Identities=13% Similarity=0.194 Sum_probs=202.3
Q ss_pred cCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 001349 811 SENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE 888 (1094)
Q Consensus 811 ~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~ 888 (1094)
.+.+.+..++++|+ .|+.++ ++.|.+||+.++ .....+.+|.+.|++++|+|+|++|++|+.||+|++||+.++.
T Consensus 15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~--~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~ 91 (311)
T d1nr0a1 15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSL--TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT 91 (311)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCS--SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT
T ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCC--ceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccc
Confidence 45566778899986 777764 677999999988 6777889999999999999999999999999999999999876
Q ss_pred eE-EEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEc--CCeEEEEECCCC
Q 001349 889 IH-CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQ--DGAIQEIDLATG 965 (1094)
Q Consensus 889 ~~-~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~--Dg~I~iwDl~~~ 965 (1094)
.. ......+..+|.++. |+|+++. +++++. ++.+++|++.++
T Consensus 92 ~~~~~~~~~~~~~v~~v~-------~s~d~~~----------------------------l~~~~~~~~~~~~v~~~~~~ 136 (311)
T d1nr0a1 92 HILKTTIPVFSGPVKDIS-------WDSESKR----------------------------IAAVGEGRERFGHVFLFDTG 136 (311)
T ss_dssp CCEEEEEECSSSCEEEEE-------ECTTSCE----------------------------EEEEECCSSCSEEEEETTTC
T ss_pred cccccccccccCcccccc-------ccccccc----------------------------cccccccccccccccccccc
Confidence 32 233344667788877 8888875 444543 567999999998
Q ss_pred ceeEEeccceeecCCCCCeEEEEEeCCccE-EEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEc
Q 001349 966 TFATIQTGHRKLLGKANPVHALQVHNGLVY-TASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCK 1041 (1094)
Q Consensus 966 ~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~-las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~ 1041 (1094)
+.. ..+.+|...|++++|+|++.+ +++++.|+ .|++||+++++....+. |...|.++.++|+ ++++|+.
T Consensus 137 ~~~------~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~-~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~ 209 (311)
T d1nr0a1 137 TSN------GNLTGQARAMNSVDFKPSRPFRIISGSDDN-TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG 209 (311)
T ss_dssp CBC------BCCCCCSSCEEEEEECSSSSCEEEEEETTS-CEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ccc------ccccccccccccccccccceeeeccccccc-ccccccccccccccccccccccccccccCccccccccccc
Confidence 876 567789999999999998774 77888886 99999999999988887 6789999999998 8999999
Q ss_pred CCeEEEEECCCCcEEEEec------ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1042 GGTVEIWDQKRQIRIETLQ------TGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1042 dg~I~vwd~~t~~~~~~l~------~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
||.|++||..++.....+. .+|.+.|++++|+|++++|++|+.||+|+|||+.
T Consensus 210 d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~ 268 (311)
T d1nr0a1 210 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA 268 (311)
T ss_dssp TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred cccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECC
Confidence 9999999999998887764 2578899999999999999999999999999973
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=8.8e-27 Score=266.21 Aligned_cols=268 Identities=18% Similarity=0.260 Sum_probs=213.3
Q ss_pred hhhccccccccccCcEEEEeeCCCCeEEEeCCc--cee------------------ecccCCCcEEEEEEeCC--EEEEE
Q 001349 772 LRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE--LVH------------------VDSSENGKVLSIACFRD--KIFSG 829 (1094)
Q Consensus 772 ~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~--~~~------------------~~~~h~~~V~~l~fspd--~LaSg 829 (1094)
|...+....|++||.+|++|+ |++|+|||..+ ... ...+|...|++++|+|+ +|++|
T Consensus 61 H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~ 139 (388)
T d1erja_ 61 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG 139 (388)
T ss_dssp CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceec
Confidence 445566777888999999986 89999999862 111 12357788999999997 99999
Q ss_pred ECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCc
Q 001349 830 HSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNS 909 (1094)
Q Consensus 830 s~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~ 909 (1094)
+.||+|++||..++ +.+..+.+|...|+++.|++++..+++|+.++.|++||..+.... ...........+.
T Consensus 140 ~~dg~v~i~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~---- 211 (388)
T d1erja_ 140 AEDRLIRIWDIENR--KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS--LTLSIEDGVTTVA---- 211 (388)
T ss_dssp ETTSCEEEEETTTT--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE--EEEECSSCEEEEE----
T ss_pred cccccccccccccc--ccccccccccccccccccccccccccccccceeeeeeeccccccc--ccccccccccccc----
Confidence 99999999999998 788889999999999999999999999999999999999987432 2222233333333
Q ss_pred eEEEeeCCCeEEEEEeCCeEEEEcC-------------------CCCceEEEEeC--CEEEEEEcCCeEEEEECCCCcee
Q 001349 910 ILCFIPQGAGIKVHLRNGKTKLLNS-------------------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFA 968 (1094)
Q Consensus 910 ~~~fspdg~~l~~~~~~g~i~l~~~-------------------~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~ 968 (1094)
.+.+++..+++++.++.+.+|+. ...|.++.|++ ..+++|+.||.|++||+.++...
T Consensus 212 --~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~ 289 (388)
T d1erja_ 212 --VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK 289 (388)
T ss_dssp --ECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------
T ss_pred --ccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccc
Confidence 14557889999999999999874 24578899986 46999999999999999876644
Q ss_pred EEec------cceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEe------CC-
Q 001349 969 TIQT------GHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVS------SE- 1034 (1094)
Q Consensus 969 ~~~~------~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s------pd- 1034 (1094)
.... .......|...|.+++|++++.++++++.|| .|++||+.+++++.++. |.+.|.+++++ |+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg-~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~ 368 (388)
T d1erja_ 290 SDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR-GVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY 368 (388)
T ss_dssp ---------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS-EEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTC
T ss_pred cccccccccceeeecccccceEEEEEECCCCCEEEEEeCCC-EEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCC
Confidence 2211 1134567889999999999999999999997 99999999999999998 78889999874 45
Q ss_pred -EEEEEEcCCeEEEEECC
Q 001349 1035 -LVYLGCKGGTVEIWDQK 1051 (1094)
Q Consensus 1035 -~l~sgs~dg~I~vwd~~ 1051 (1094)
++++|+.||+|+|||++
T Consensus 369 ~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 369 NVFATGSGDCKARIWKYK 386 (388)
T ss_dssp EEEEEEETTSEEEEEEEE
T ss_pred CEEEEEeCCCEEEEEeee
Confidence 79999999999999974
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=6.5e-26 Score=251.72 Aligned_cols=266 Identities=23% Similarity=0.382 Sum_probs=210.6
Q ss_pred cceeecccCCCcE-EEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 001349 804 ELVHVDSSENGKV-LSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVW 882 (1094)
Q Consensus 804 ~~~~~~~~h~~~V-~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vW 882 (1094)
+...++.||++.| +|+.|++++|+||+.||+|+|||+.++ +++.++.+|.+.|++++|+|+ +|++|+.|+++++|
T Consensus 7 ~~~~~l~GH~~~V~s~~~~~g~~l~sgs~Dg~i~vWd~~~~--~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~ 82 (342)
T d2ovrb2 7 KSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTG--KCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVW 82 (342)
T ss_dssp CCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTC--CEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEE
T ss_pred CcCEEECCcCCceEEEEEECCCEEEEEeCCCeEEEEECCCC--CEEEEEeCCCCCEEEEEeCCC--ccccceeccccccc
Confidence 3456789999987 568888889999999999999999999 789999999999999999864 99999999999999
Q ss_pred ECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCC------------ceEEEEeCCEEEE
Q 001349 883 SIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKY------------PKCLALVQGKVYC 950 (1094)
Q Consensus 883 di~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~------------v~~l~~s~~~l~s 950 (1094)
+......... .......+.. ....+.....+..++.+.+|+.... ..........+++
T Consensus 83 ~~~~~~~~~~-~~~~~~~~~~---------~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (342)
T d2ovrb2 83 NAETGECIHT-LYGHTSTVRC---------MHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVS 152 (342)
T ss_dssp ETTTTEEEEE-ECCCSSCEEE---------EEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEE
T ss_pred ccccccceec-ccccceeEee---------eecccccccccccceeEEEeecccccceeeeecccccceeeccccceeee
Confidence 9988653222 2222222222 3344556666777777777765332 2222333466899
Q ss_pred EEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEE
Q 001349 951 GCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAM 1029 (1094)
Q Consensus 951 gs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l 1029 (1094)
++.|+.|++||...+... ..+.+|...+..+. .++.++++++.|| .|++||++.++++..+. |...+.++
T Consensus 153 ~~~d~~i~~~d~~~~~~~------~~~~~~~~~~~~~~--~~~~~l~s~~~dg-~i~~~d~~~~~~~~~~~~~~~~v~~~ 223 (342)
T d2ovrb2 153 GAYDFMVKVWDPETETCL------HTLQGHTNRVYSLQ--FDGIHVVSGSLDT-SIRVWDVETGNCIHTLTGHQSLTSGM 223 (342)
T ss_dssp EETTSCEEEEEGGGTEEE------EEECCCSSCEEEEE--ECSSEEEEEETTS-CEEEEETTTCCEEEEECCCCSCEEEE
T ss_pred ecCCCeEEEeecccceee------EEEcCccccccccc--CCCCEEEEEeCCC-eEEEeecccceeeeEecccccceeEE
Confidence 999999999999988876 45566766666554 4677899999997 99999999999998887 67889999
Q ss_pred EEeCCEEEEEEcCCeEEEEECCCCcEEEEecc--cCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1030 VVSSELVYLGCKGGTVEIWDQKRQIRIETLQT--GTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1030 ~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~--~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
.++++++++|+.||.|++||....+....+.. .|...+.++.|+ ++++++|+.||+|++||+.
T Consensus 224 ~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~ 288 (342)
T d2ovrb2 224 ELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLK 288 (342)
T ss_dssp EEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETT
T ss_pred ecCCCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECC
Confidence 99999999999999999999999988887743 345566666664 6799999999999999973
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=3.4e-27 Score=258.57 Aligned_cols=257 Identities=19% Similarity=0.232 Sum_probs=199.0
Q ss_pred cceeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 001349 804 ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWS 883 (1094)
Q Consensus 804 ~~~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWd 883 (1094)
++++++.+|.++|++++|+| |+||+.||+|++||+.++ ..+|...|.+++|+++ ..+++++.|++|++|+
T Consensus 4 ~~i~~l~gH~~~I~~l~~s~--l~sgs~Dg~v~~Wd~~~~-------~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~ 73 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVNP--LISGSYDGRIMEWSSSSM-------HQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNG 73 (287)
T ss_dssp EEEEEECCCSSCEEEEETTT--TEEEETTSCEEETTTTEE-------ECCCCSCEEEEECCST-TCCEEEETTTEEEETT
T ss_pred ceeEEECCCCCceEEEEECc--EEEEeCCCeEEEEECCCC-------CCCCCCCEEEEEecCC-CeEEEEeecccccccc
Confidence 35678899999999999998 999999999999998765 2589999999999865 4679999999999999
Q ss_pred CCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEc-----------CCCCceEEEEeCCEEEEEE
Q 001349 884 IGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN-----------SSKYPKCLALVQGKVYCGC 952 (1094)
Q Consensus 884 i~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~-----------~~~~v~~l~~s~~~l~sgs 952 (1094)
+...+ ....+..+. +.+++..++.. .++.+.+|+ ....+.++...++.+++++
T Consensus 74 ~~~~~--------~~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 137 (287)
T d1pgua2 74 ITKHE--------FGSQPKVAS-------ANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGL 137 (287)
T ss_dssp EEEEE--------CSSCEEEEE-------ECSSSEEEEEE-TTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEE
T ss_pred ccccc--------cccceeeee-------eccCCceEEEe-ecccceeeeccceeeeeeccccceeeeeeccCcceeeec
Confidence 86531 122333333 45555444433 233333333 3344556666677888888
Q ss_pred cCC-eEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEe-c-CCCCEEEE
Q 001349 953 QDG-AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL-P-TLSEVRAM 1029 (1094)
Q Consensus 953 ~Dg-~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~-~-~~~~v~~l 1029 (1094)
.|+ .|++|++........ ....|...+++++|+|++.++++++.|| .|++||+.++...... . |...|.++
T Consensus 138 ~~~~~v~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~~~~l~~g~~dg-~i~i~d~~~~~~~~~~~~~h~~~v~~~ 211 (287)
T d1pgua2 138 EEGNTIQVFKLSDLEVSFD-----LKTPLRAKPSYISISPSETYIAAGDVMG-KILLYDLQSREVKTSRWAFRTSKINAI 211 (287)
T ss_dssp TTTSCEEEEETTEEEEEEE-----CSSCCSSCEEEEEECTTSSEEEEEETTS-CEEEEETTTTEEEECCSCCCSSCEEEE
T ss_pred cccceeeeeeccccceeee-----eeeccCCceeEEEeccCccccccccccc-cccceeeccccccccccccccccccee
Confidence 875 699999876554422 2234678899999999999999999997 9999999998876653 3 67889999
Q ss_pred EEeCC------------EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1030 VVSSE------------LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1030 ~~spd------------~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
+|+|+ ++++|+.|++|+|||+.++........+|.+.|++++|+|++ .|++++.||+|++|++
T Consensus 212 ~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 212 SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp EECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred eecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 99863 799999999999999987544334446999999999999986 6899999999999996
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=3.1e-26 Score=256.99 Aligned_cols=275 Identities=10% Similarity=0.055 Sum_probs=208.0
Q ss_pred cccccccCcEEEEeeCCC-CeEEEeCC----cceeecccC-CCcEEEEEEeC--C--EEEEEECCCeEEEEecCCCcc--
Q 001349 778 YSPLAFEMVKVLSNGHDS-SADFWNHR----ELVHVDSSE-NGKVLSIACFR--D--KIFSGHSDGTIKVWTGRGSIL-- 845 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg-~I~vWd~~----~~~~~~~~h-~~~V~~l~fsp--d--~LaSgs~Dg~I~vWd~~t~~~-- 845 (1094)
...+.+++..++.++.+. .|+.|+.. .....+.+| ...|++++|+| + +|++|+.||+|+|||+..+..
T Consensus 22 ~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~ 101 (325)
T d1pgua1 22 HLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESN 101 (325)
T ss_dssp CCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGT
T ss_pred EEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCccee
Confidence 345667888998876554 45667654 234456677 46899999997 2 899999999999999875421
Q ss_pred ----eeEEEecccCCCeEEEEEecCCCEEEEEeC--CCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCe
Q 001349 846 ----HLIQQIREHTKAVTGLAILQSGEMLYSGSL--DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAG 919 (1094)
Q Consensus 846 ----~~~~~l~~H~~~V~sv~fspdg~~LaSgs~--DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~ 919 (1094)
.....+..|.++|.+++|+++|+++++++. ++.+++|+.++++. ......+...|.++. |+|++..
T Consensus 102 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~-------~~~~~~~ 173 (325)
T d1pgua1 102 SVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNS-LGEVSGHSQRINACH-------LKQSRPM 173 (325)
T ss_dssp EEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCE-EEECCSCSSCEEEEE-------ECSSSSC
T ss_pred eeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccccc-ceeeeeccccccccc-------ccccccc
Confidence 122345678999999999999999988765 67899999998752 222334566777776 6666654
Q ss_pred EEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC-ccEEEE
Q 001349 920 IKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG-LVYTAS 998 (1094)
Q Consensus 920 l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~-~~~las 998 (1094)
.+++++.||.|++||..+++..... ....+|...|++++|+|+ +.++++
T Consensus 174 ---------------------------~~~~~~~d~~v~~~d~~~~~~~~~~---~~~~~~~~~v~~v~~~pd~~~~l~s 223 (325)
T d1pgua1 174 ---------------------------RSMTVGDDGSVVFYQGPPFKFSASD---RTHHKQGSFVRDVEFSPDSGEFVIT 223 (325)
T ss_dssp ---------------------------EEEEEETTTEEEEEETTTBEEEEEE---CSSSCTTCCEEEEEECSTTCCEEEE
T ss_pred ---------------------------eEEEeecccccccccccccccceec---ccccCCCCccEEeeeccccceeccc
Confidence 3778999999999999887665432 234567889999999986 688999
Q ss_pred EECCCCEEEEEECCCCeEEEEec-CCCC----EEEEEEeCC-EEEEEEcCCeEEEEECCCCcEEEEecccCCc--ceE--
Q 001349 999 TSLDGAAVKMWSTSNYNMVGSLP-TLSE----VRAMVVSSE-LVYLGCKGGTVEIWDQKRQIRIETLQTGTSG--KVQ-- 1068 (1094)
Q Consensus 999 ~s~Dg~~I~iwd~~~~~~~~~~~-~~~~----v~~l~~spd-~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~--~I~-- 1068 (1094)
++.|+ .|++||+++++.+..+. |... +.++.+.+. ++++|+.|++|+|||+.+++++..+. .|.. .+.
T Consensus 224 ~~~d~-~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~ 301 (325)
T d1pgua1 224 VGSDR-KISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT-LDKQQLGNQQV 301 (325)
T ss_dssp EETTC-CEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEE-CCTTCGGGCEE
T ss_pred ccccc-ceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEE-ecCCcccCeEE
Confidence 99986 99999999999999887 4433 445555443 89999999999999999999998874 4433 333
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1069 CMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1069 ~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
++.|.+ +.+|++|+.||+|++|||
T Consensus 302 ~~~~~~-~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 302 GVVATG-NGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEEEE-TTEEEEEETTSCEEEEET
T ss_pred EEEECC-CCEEEEEECCCEEEEEEC
Confidence 444443 347899999999999997
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.1e-25 Score=259.38 Aligned_cols=278 Identities=16% Similarity=0.192 Sum_probs=211.0
Q ss_pred eecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcc----eeEEEecccCCCeEEEEEe---c----CCCEEEEEeC
Q 001349 807 HVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSIL----HLIQQIREHTKAVTGLAIL---Q----SGEMLYSGSL 875 (1094)
Q Consensus 807 ~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~----~~~~~l~~H~~~V~sv~fs---p----dg~~LaSgs~ 875 (1094)
....+|.+.|.++++++++++||+.||+|+|||..+... ........|...+..+.+. + ++.++++++.
T Consensus 8 ~~~~~H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 87 (393)
T d1sq9a_ 8 NAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF 87 (393)
T ss_dssp EESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred ecCCcccCccEEEEEeCCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeC
Confidence 566799999999999999999999999999999765421 1233333455554433331 1 3457889999
Q ss_pred CCcEEEEECCCCc----eEEEEec-----ccCccceeeeecCceEEEeeC-----CCeEEEEEeCCeEEEEcC-------
Q 001349 876 DKTARVWSIGNEE----IHCVQVH-----DIKDQIQNLAVSNSILCFIPQ-----GAGIKVHLRNGKTKLLNS------- 934 (1094)
Q Consensus 876 DgtI~vWdi~~~~----~~~~~~~-----~~~~~V~~v~~~~~~~~fspd-----g~~l~~~~~~g~i~l~~~------- 934 (1094)
||+|++|++..+. ....... .....+..+. +.++ +..++....+|.+.+|+.
T Consensus 88 dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~ 160 (393)
T d1sq9a_ 88 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK-------WGASNDRLLSHRLVATDVKGTTYIWKFHPFADES 160 (393)
T ss_dssp TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEE-------EECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred CCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEE-------EecCCCcccccEEEEEcCCCcEEEEEeecCCccc
Confidence 9999999976543 1111111 1222333443 4333 467788889999999863
Q ss_pred -----------------------CCCceEEEEeC-CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEe
Q 001349 935 -----------------------SKYPKCLALVQ-GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVH 990 (1094)
Q Consensus 935 -----------------------~~~v~~l~~s~-~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs 990 (1094)
...+.+++|++ +.+++|+.||+|++||+.+++.+..+.....+.+|..+|++++|+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 240 (393)
T d1sq9a_ 161 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 240 (393)
T ss_dssp HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred ceeeeeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccc
Confidence 23478899986 589999999999999999999888777777888999999999999
Q ss_pred CCccEEEEEECCCC--EEEEEECCCCeEEEEec--------------CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCC
Q 001349 991 NGLVYTASTSLDGA--AVKMWSTSNYNMVGSLP--------------TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKR 1052 (1094)
Q Consensus 991 ~~~~~las~s~Dg~--~I~iwd~~~~~~~~~~~--------------~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t 1052 (1094)
|++.++++++.|+. .|++||+.+++.+..+. |...|++++|+|| +|++|+.|++|+|||+.+
T Consensus 241 pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~ 320 (393)
T d1sq9a_ 241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 320 (393)
T ss_dssp SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred cccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCC
Confidence 99999999998852 59999999998887763 6688999999998 999999999999999999
Q ss_pred CcEEEEecccCCcc---------------------eEEEEEcCCC----------CEEEEEeCCCcEEEEe
Q 001349 1053 QIRIETLQTGTSGK---------------------VQCMALDDNE----------EFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1053 ~~~~~~l~~~h~~~---------------------I~~l~~Spdg----------~~L~sgs~DG~I~iWd 1092 (1094)
++++.++ .+|.+. ++++.|.+++ ..|++++.|+.|++|.
T Consensus 321 g~~~~~l-~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~ 390 (393)
T d1sq9a_ 321 KERITTL-NMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 390 (393)
T ss_dssp TEEEEEE-ECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred CCEEEEE-CCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEEe
Confidence 9999999 477543 4566665532 3588888999999985
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=3.8e-25 Score=244.76 Aligned_cols=275 Identities=10% Similarity=0.095 Sum_probs=206.3
Q ss_pred ceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcc-eeEEEecccCCCeEEEEEecC-CCEEEEEeCCCcEE
Q 001349 805 LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSIL-HLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTAR 880 (1094)
Q Consensus 805 ~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~-~~~~~l~~H~~~V~sv~fspd-g~~LaSgs~DgtI~ 880 (1094)
.+++..+|.+.|++|+|+|+ +|++|+.||+|+|||+.++.. ..+....+|.++|++++|+|+ +.+|++|+.||+|+
T Consensus 3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~ 82 (342)
T d1yfqa_ 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence 45678899999999999996 999999999999999976532 233344479999999999986 56899999999999
Q ss_pred EEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC--------------------CCceE
Q 001349 881 VWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS--------------------KYPKC 940 (1094)
Q Consensus 881 vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~--------------------~~v~~ 940 (1094)
+|++..+................. .+.+++..++....++.+.+|+.. .....
T Consensus 83 ~w~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (342)
T d1yfqa_ 83 KVDLIGSPSFQALTNNEANLGICR-------ICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFT 155 (342)
T ss_dssp EECSSSSSSEEECBSCCCCSCEEE-------EEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEE
T ss_pred eeeccccccccccccccccccccc-------ccccccccccccccccccceeeccccccceeeecccccccccceeeeee
Confidence 999988764333333222222222 267788899999999999999731 11233
Q ss_pred EEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEe-CCccEEEEEECCCCEEEEEECCCCeE---
Q 001349 941 LALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVH-NGLVYTASTSLDGAAVKMWSTSNYNM--- 1016 (1094)
Q Consensus 941 l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs-~~~~~las~s~Dg~~I~iwd~~~~~~--- 1016 (1094)
+...++.+++++.||.|++||+..+...... .....+...+.+..+. .++..+++++.|| .+.+|+......
T Consensus 156 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~~v~~~~~~~~~~~ 231 (342)
T d1yfqa_ 156 MDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT---IEESGLKYQIRDVALLPKEQEGYACSSIDG-RVAVEFFDDQGDDYN 231 (342)
T ss_dssp EEECSSEEEEEESTTEEEEEESSCCTTCCCE---EEECSCSSCEEEEEECSGGGCEEEEEETTS-EEEEEECCTTCCSTT
T ss_pred eeccCCceeeecCCCcEEEEecccCccccee---eeecccccceeeeEeecCCCCEEEeecCCC-eEEEEEecCCcceee
Confidence 4445678999999999999999877654221 1223344456666554 5677888888887 999999864321
Q ss_pred ------EEEe-------cCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEE
Q 001349 1017 ------VGSL-------PTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVI 1081 (1094)
Q Consensus 1017 ------~~~~-------~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~s 1081 (1094)
.... .|...+++++|+|+ +|++|+.||.|++||+.+++.+..+...| .+..++|+|+|+++++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~--~~~~~~~s~~~~~l~~ 309 (342)
T d1yfqa_ 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN--EDSVVKIACSDNILCL 309 (342)
T ss_dssp CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS--SSEEEEEEECSSEEEE
T ss_pred ccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC--CCEEEEEEeCCCEEEE
Confidence 1111 13456899999998 89999999999999999999999885444 4566788889999999
Q ss_pred EeCCCcEEEEe
Q 001349 1082 GTSDGRIQAWG 1092 (1094)
Q Consensus 1082 gs~DG~I~iWd 1092 (1094)
++.|+++++|.
T Consensus 310 a~sdd~~~~~~ 320 (342)
T d1yfqa_ 310 ATSDDTFKTNA 320 (342)
T ss_dssp EEECTHHHHCS
T ss_pred EEcCCcEEEee
Confidence 99998877765
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.94 E-value=2.1e-24 Score=240.13 Aligned_cols=267 Identities=13% Similarity=0.175 Sum_probs=221.8
Q ss_pred HHHhhhccccccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCc
Q 001349 769 MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI 844 (1094)
Q Consensus 769 ~~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~ 844 (1094)
+++|...+....|.+++.+|++|+.||+|+|||.. .....+..|.+.|.+++|+|+ ++++|+.|+++++|+.....
T Consensus 51 L~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~ 130 (340)
T d1tbga_ 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE 130 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSC
T ss_pred ECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccc
Confidence 35666777778889999999999999999999987 456677899999999999996 99999999999999976542
Q ss_pred --ceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEE
Q 001349 845 --LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKV 922 (1094)
Q Consensus 845 --~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~ 922 (1094)
......+.+|.......... .+..+..+..|++...|+..... ...........+.... +.+.+..+++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 201 (340)
T d1tbga_ 131 GNVRVSRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQ-QTTTFTGHTGDVMSLS-------LAPDTRLFVS 201 (340)
T ss_dssp SCCCEEEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTE-EEEEEECCSSCEEEEE-------ECTTSSEEEE
T ss_pred cccccceecccccccccccccc-ccccccccccccccccccccccc-ccccccccceeEeeec-------cccccceeEE
Confidence 24566778888877766655 45678888899999999988764 2333333445555555 7888899999
Q ss_pred EEeCCeEEEEcC------------CCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEE
Q 001349 923 HLRNGKTKLLNS------------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQ 988 (1094)
Q Consensus 923 ~~~~g~i~l~~~------------~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~ 988 (1094)
+..++.+++|+. ...|.+++|++ ..+++|+.||.|++||+........+ ....+...|.+++
T Consensus 202 ~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~----~~~~~~~~i~~~~ 277 (340)
T d1tbga_ 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY----SHDNIICGITSVS 277 (340)
T ss_dssp EETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE----CCTTCCSCEEEEE
T ss_pred eecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccc----ccccccCceEEEE
Confidence 999999999973 46789999986 46999999999999999988876442 2345677899999
Q ss_pred EeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEEEcCCeEEEEE
Q 001349 989 VHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLGCKGGTVEIWD 1049 (1094)
Q Consensus 989 fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sgs~dg~I~vwd 1049 (1094)
|++++.++++++.|| .|++||+.+++++..+. |...|++++|+|+ ++++|+.||+|+|||
T Consensus 278 ~s~~~~~l~~g~~dg-~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 278 FSKSGRLLLAGYDDF-NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ECSSSCEEEEEETTS-CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ECCCCCEEEEEECCC-EEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 999999999999997 99999999999999998 7889999999998 899999999999997
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.94 E-value=5.5e-25 Score=242.12 Aligned_cols=265 Identities=14% Similarity=0.139 Sum_probs=207.1
Q ss_pred HHhhhccccccccccCcEEEEeeCCCCeEEEeCCc--ceeec-ccCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcc
Q 001349 770 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVD-SSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSIL 845 (1094)
Q Consensus 770 ~~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~--~~~~~-~~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~ 845 (1094)
.+|...+....+++++.+|++|+.||+|++||+.+ ....+ .+|.+.|++++|+|+ .+++++.|+++++|+......
T Consensus 9 ~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~ 88 (299)
T d1nr0a2 9 YGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGV 88 (299)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSS
T ss_pred CCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEeccCCccc
Confidence 45666677778889999999999999999999873 33444 478999999999997 788889999999999875421
Q ss_pred e-eEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEE
Q 001349 846 H-LIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHL 924 (1094)
Q Consensus 846 ~-~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~ 924 (1094)
. .......|...+.+++|+|+|.++++++. +.+++|+.... ... .....+.+++ |+|+++.++++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~-~~i~~~~~~~~--~~~---~~~~~~~~~~-------~s~~~~~l~~g~ 155 (299)
T d1nr0a2 89 DSSKAVANKLSSQPLGLAVSADGDIAVAACY-KHIAIYSHGKL--TEV---PISYNSSCVA-------LSNDKQFVAVGG 155 (299)
T ss_dssp CTTSCCEEECSSCEEEEEECTTSSCEEEEES-SEEEEEETTEE--EEE---ECSSCEEEEE-------ECTTSCEEEEEE
T ss_pred ccccccccccccccccccccccccccccccc-ccccccccccc--ccc---cccccccccc-------cccccccccccc
Confidence 1 12223467888999999999998776654 68999996531 111 1233445554 899999999999
Q ss_pred eCCeEEEEcC-------------CCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEE
Q 001349 925 RNGKTKLLNS-------------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQV 989 (1094)
Q Consensus 925 ~~g~i~l~~~-------------~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~f 989 (1094)
.+|.+.+|+. ...|.++++++ ..+++++.||.|++||+.++...... ..+.+|..+|++++|
T Consensus 156 ~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~---~~~~~h~~~v~~l~~ 232 (299)
T d1nr0a2 156 QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT---NSWTFHTAKVACVSW 232 (299)
T ss_dssp TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC---CCCCCCSSCEEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccc
Confidence 9999999873 46789999986 46999999999999999887655321 356778999999999
Q ss_pred eCCccEEEEEECCCCEEEEEECCCCeEEEEe--c--CCCCEEEEEEeCC-EEEEEEcCCeEEEEECC
Q 001349 990 HNGLVYTASTSLDGAAVKMWSTSNYNMVGSL--P--TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQK 1051 (1094)
Q Consensus 990 s~~~~~las~s~Dg~~I~iwd~~~~~~~~~~--~--~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~ 1051 (1094)
+|++.++++++.|| .|++||+.++.....+ . +...+.++.+.++ ++++|+.||+|++||+.
T Consensus 233 s~~~~~l~sgs~dg-~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 233 SPDNVRLATGSLDN-SVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp CTTSSEEEEEETTS-CEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred cccccceEEEcCCC-EEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeCCCEEEEEecc
Confidence 99999999999997 9999999876533222 2 3456777777665 99999999999999974
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.5e-23 Score=226.82 Aligned_cols=249 Identities=21% Similarity=0.311 Sum_probs=197.5
Q ss_pred ccccccCcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCC
Q 001349 779 SPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTK 856 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~ 856 (1094)
..+++|+++|+||+.||+|+|||.. +....+.+|.+.|++++|++++|+||+.||+|++|++.++ ........+..
T Consensus 19 ~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~~--~~~~~~~~~~~ 96 (293)
T d1p22a2 19 YCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTG--EMLNTLIHHCE 96 (293)
T ss_dssp EEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSC--CEEEEECCCCS
T ss_pred EEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecccceeecccccccccccccccc--ccccccccccc
Confidence 3578899999999999999999987 5678889999999999999899999999999999999988 45555544444
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCce--EEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC
Q 001349 857 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEEI--HCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS 934 (1094)
Q Consensus 857 ~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~--~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~ 934 (1094)
.. ..+.+....+++++.++.+++||..+... .......+...+.. +.+....+.+.+.++.+++|+.
T Consensus 97 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---------~~~~~~~~~~~s~d~~i~~~d~ 165 (293)
T d1p22a2 97 AV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV---------VDFDDKYIVSASGDRTIKVWNT 165 (293)
T ss_dssp CE--EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEE---------EEEETTEEEEEETTSEEEEEET
T ss_pred cc--ccccccccceeecccccceeEeecccccccccccccccccccccc---------ceecccccccccCCCceeeecC
Confidence 33 34556777899999999999999987652 22222334444444 3445566777788888888875
Q ss_pred C------------CCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECC
Q 001349 935 S------------KYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLD 1002 (1094)
Q Consensus 935 ~------------~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~D 1002 (1094)
. ..+..+.+++..+++++.||.|++||++++..+ ....+|...+.. +.++..++++++.|
T Consensus 166 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~~v~~--~~~~~~~l~sg~~d 237 (293)
T d1p22a2 166 STCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACL------RVLEGHEELVRC--IRFDNKRIVSGAYD 237 (293)
T ss_dssp TTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEE------EEECCCSSCEEE--EECCSSEEEEEETT
T ss_pred CCCcEEEEEcccccccccccCCCCeEEEecCCCEEEEEecccceee------eeecccceeeee--ccccceEEEEEcCC
Confidence 3 346677778889999999999999999999887 445566777765 45677889999999
Q ss_pred CCEEEEEECCC---------CeEEEEec-CCCCEEEEEEeCCEEEEEEcCCeEEEEE
Q 001349 1003 GAAVKMWSTSN---------YNMVGSLP-TLSEVRAMVVSSELVYLGCKGGTVEIWD 1049 (1094)
Q Consensus 1003 g~~I~iwd~~~---------~~~~~~~~-~~~~v~~l~~spd~l~sgs~dg~I~vwd 1049 (1094)
| .|++||+.+ ..++..+. |.+.|++++|++.+|++|+.||+|+|||
T Consensus 238 g-~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 238 G-KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp S-CEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC
T ss_pred C-EEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcCCEEEEEecCCEEEEeC
Confidence 7 999999743 34566666 7788999999999999999999999997
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=7.2e-24 Score=237.52 Aligned_cols=241 Identities=15% Similarity=0.174 Sum_probs=186.2
Q ss_pred CCcEEEEEEeCC--EEEEEECCC-eEEEEecCCCcceeEEEecccC-CCeEEEEEec--CCCEEEEEeCCCcEEEEECCC
Q 001349 813 NGKVLSIACFRD--KIFSGHSDG-TIKVWTGRGSILHLIQQIREHT-KAVTGLAILQ--SGEMLYSGSLDKTARVWSIGN 886 (1094)
Q Consensus 813 ~~~V~~l~fspd--~LaSgs~Dg-~I~vWd~~t~~~~~~~~l~~H~-~~V~sv~fsp--dg~~LaSgs~DgtI~vWdi~~ 886 (1094)
.+.+++++|+|+ .|+.++.+. .|+.||........+..+.+|. ..|++++|+| +|.+|++|+.||+|+|||+..
T Consensus 17 ~~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~ 96 (325)
T d1pgua1 17 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF 96 (325)
T ss_dssp TTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecC
Confidence 345688999985 777776554 4677877665556677888885 6799999998 678999999999999999876
Q ss_pred Cce-EEE------EecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEE
Q 001349 887 EEI-HCV------QVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQE 959 (1094)
Q Consensus 887 ~~~-~~~------~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~i 959 (1094)
+.. ... ....+..+|.++. |+++|+.+++ +.++.++.+++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~~v~-------~s~~~~~l~~--------------------------~~~~~~~~~~~ 143 (325)
T d1pgua1 97 DKESNSVEVNVKSEFQVLAGPISDIS-------WDFEGRRLCV--------------------------VGEGRDNFGVF 143 (325)
T ss_dssp EGGGTEEEEEEEEEEECCSSCEEEEE-------ECTTSSEEEE--------------------------EECCSSCSEEE
T ss_pred CcceeeeecccccccccccCcEEEEE-------ECCCCCccce--------------------------eeccccceEEE
Confidence 531 011 1122344555555 6666664321 12234778999
Q ss_pred EECCCCceeEEeccceeecCCCCCeEEEEEeCCccE-EEEEECCCCEEEEEECCCCeEEEEec----CCCCEEEEEEeCC
Q 001349 960 IDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVY-TASTSLDGAAVKMWSTSNYNMVGSLP----TLSEVRAMVVSSE 1034 (1094)
Q Consensus 960 wDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~-las~s~Dg~~I~iwd~~~~~~~~~~~----~~~~v~~l~~spd 1034 (1094)
|+..+++.+ ..+.+|...|++++|++++.+ +++++.|+ .+++||..+++....+. +...|.+++|+|+
T Consensus 144 ~~~~~~~~~------~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~-~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd 216 (325)
T d1pgua1 144 ISWDSGNSL------GEVSGHSQRINACHLKQSRPMRSMTVGDDG-SVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPD 216 (325)
T ss_dssp EETTTCCEE------EECCSCSSCEEEEEECSSSSCEEEEEETTT-EEEEEETTTBEEEEEECSSSCTTCCEEEEEECST
T ss_pred Eeecccccc------eeeeecccccccccccccccceEEEeeccc-ccccccccccccceecccccCCCCccEEeeeccc
Confidence 999999877 566789999999999988764 67788886 99999999888776664 4677999999986
Q ss_pred ---EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEc---CCCCEEEEEeCCCcEEEEeCC
Q 001349 1035 ---LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALD---DNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1035 ---~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~S---pdg~~L~sgs~DG~I~iWdls 1094 (1094)
++++|+.||.|++||+.+++.+..+. +|...+.++.|+ |||++|++++.||+|+|||+.
T Consensus 217 ~~~~l~s~~~d~~i~iwd~~~~~~~~~l~-~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~ 281 (325)
T d1pgua1 217 SGEFVITVGSDRKISCFDGKSGEFLKYIE-DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVT 281 (325)
T ss_dssp TCCEEEEEETTCCEEEEETTTCCEEEECC-BTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETT
T ss_pred cceeccccccccceeeeeecccccccccc-ccccccccceeeeeccCCCEEEEEeCCCeEEEEECC
Confidence 79999999999999999999999994 777776665555 789999999999999999974
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.91 E-value=2.7e-23 Score=233.51 Aligned_cols=273 Identities=10% Similarity=0.029 Sum_probs=203.9
Q ss_pred ccccc-cCcEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCC--EEEEEECC--CeEEEEecCCCcceeEEEecc
Q 001349 779 SPLAF-EMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSD--GTIKVWTGRGSILHLIQQIRE 853 (1094)
Q Consensus 779 ~~~~~-d~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd--~LaSgs~D--g~I~vWd~~t~~~~~~~~l~~ 853 (1094)
..|+| ||+++++++ +|.|.+||.........+|.+.|.+++|+|| .|++++.+ ..|++||..++ ....+..
T Consensus 8 ~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~---~~~~~~~ 83 (360)
T d1k32a3 8 EDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG---KAEKFEE 83 (360)
T ss_dssp EEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTC---CEEECCC
T ss_pred ccccCCCCCEEEEEE-CCeEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCC---cEEEeeC
Confidence 45788 899999876 5799999998544444589999999999998 66665544 37999999988 4556778
Q ss_pred cCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEc
Q 001349 854 HTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLN 933 (1094)
Q Consensus 854 H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~ 933 (1094)
|.+.|.+++|+|||++|++++.++.+++|+..+++.... ...+...+.+++ |+|||+.++....++.
T Consensus 84 ~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-------~spdg~~la~~~~~~~----- 150 (360)
T d1k32a3 84 NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI-ERSREAMITDFT-------ISDNSRFIAYGFPLKH----- 150 (360)
T ss_dssp CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-EECSSSCCCCEE-------ECTTSCEEEEEEEECS-----
T ss_pred CCceEEeeeecccccccceeccccccccccccccceeee-eecccccccchh-------hccceeeeeeeccccc-----
Confidence 999999999999999999999999999999999864333 233455566666 9999998876544332
Q ss_pred CCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCC
Q 001349 934 SSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN 1013 (1094)
Q Consensus 934 ~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~ 1013 (1094)
..+.+..++.+++||+.+++.. ....|...+..+.|+|++.++++++.++ .+++||...
T Consensus 151 -------------~~~~~~~~~~~~v~d~~~~~~~-------~~~~~~~~~~~~~~spdg~~l~~~s~~~-~~~~~d~~~ 209 (360)
T d1k32a3 151 -------------GETDGYVMQAIHVYDMEGRKIF-------AATTENSHDYAPAFDADSKNLYYLSYRS-LDPSPDRVV 209 (360)
T ss_dssp -------------STTCSCCEEEEEEEETTTTEEE-------ECSCSSSBEEEEEECTTSCEEEEEESCC-CCCEECSSS
T ss_pred -------------cceeeccccceeeeccccCcee-------eecccccccccccccCCCCEEEEEeCCC-ceEcccccc
Confidence 1234566778999999988764 3344567788999999999999999886 889998654
Q ss_pred CeE-------EEEec-------------------------------------CCCCEEEEEEeCC---------------
Q 001349 1014 YNM-------VGSLP-------------------------------------TLSEVRAMVVSSE--------------- 1034 (1094)
Q Consensus 1014 ~~~-------~~~~~-------------------------------------~~~~v~~l~~spd--------------- 1034 (1094)
... ...+. ..+....+...++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (360)
T d1k32a3 210 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAA 289 (360)
T ss_dssp SCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHH
T ss_pred cceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCee
Confidence 321 11110 0112233443333
Q ss_pred EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1035 LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1035 ~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
++++++.++.|++||+.+++... |.+.|.+++|||||++|++++.||+|++||+.
T Consensus 290 ~~~~~~~~~~i~~~d~~~~~~~~-----~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~ 344 (360)
T d1k32a3 290 YYQGAPEKGVLLKYDVKTRKVTE-----VKNNLTDLRLSADRKTVMVRKDDGKIYTFPLE 344 (360)
T ss_dssp HHHCCCCCEEEEEEETTTCCEEE-----EEEEEEEEEECTTSCEEEEEETTSCEEEEESS
T ss_pred EEEecCCCCEEEEEECCCCeEEE-----ecCCcCEEEECCCCCEEEEEECCCeEEEEECC
Confidence 23445568899999999886532 34569999999999999999999999999974
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=5.5e-22 Score=228.09 Aligned_cols=243 Identities=13% Similarity=0.110 Sum_probs=175.1
Q ss_pred EEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc-----eEEEEecccCccceeeeecCceEEEeeCCCeEEE
Q 001349 848 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE-----IHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKV 922 (1094)
Q Consensus 848 ~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~-----~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~ 922 (1094)
....++|.+.|++++++ +++++|+|.|++|+|||..+.+ ........+...+..+...........++..+++
T Consensus 7 ~~~~~~H~~~I~~v~~~--~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 84 (393)
T d1sq9a_ 7 ANAGKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT 84 (393)
T ss_dssp EEESSCSSSCEEEEEEC--SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred eecCCcccCccEEEEEe--CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEE
Confidence 34557999999999986 4799999999999999987653 1122222223222222211000000112345667
Q ss_pred EEeCCeEEEEcC----------------------CCCceEEEEeC-------CEEEEEEcCCeEEEEECCCCce------
Q 001349 923 HLRNGKTKLLNS----------------------SKYPKCLALVQ-------GKVYCGCQDGAIQEIDLATGTF------ 967 (1094)
Q Consensus 923 ~~~~g~i~l~~~----------------------~~~v~~l~~s~-------~~l~sgs~Dg~I~iwDl~~~~~------ 967 (1094)
+..+|.+++|+. ...+..+.+.. ..+++++.||+|++||+.....
T Consensus 85 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~ 164 (393)
T d1sq9a_ 85 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT 164 (393)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred EeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceee
Confidence 778899988862 12244555542 3488999999999999753211
Q ss_pred ------eEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-------CCCCEEEEEEeCC
Q 001349 968 ------ATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-------TLSEVRAMVVSSE 1034 (1094)
Q Consensus 968 ------~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-------~~~~v~~l~~spd 1034 (1094)
............+...+++++|+|++ ++++++.|+ +|++||+.+++++..+. |...|.+++|+||
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg-~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd 242 (393)
T d1sq9a_ 165 LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNG-TVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 242 (393)
T ss_dssp TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTS-EEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS
T ss_pred eeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCC-cEEEEeecccccccccccccccccccceEEEcccccc
Confidence 11111112234456678999999998 778999886 99999999998877654 5688999999998
Q ss_pred --EEEEEEcCC---eEEEEECCCCcEEEEec------------ccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1035 --LVYLGCKGG---TVEIWDQKRQIRIETLQ------------TGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1035 --~l~sgs~dg---~I~vwd~~t~~~~~~l~------------~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
+|++|+.|+ .|++||+.+++.+..+. .+|.+.|++++|+||+++|+||+.||+|++||+.
T Consensus 243 g~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~ 319 (393)
T d1sq9a_ 243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK 319 (393)
T ss_dssp TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred cceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECC
Confidence 899999887 49999999999888774 3799999999999999999999999999999973
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=4.1e-22 Score=220.07 Aligned_cols=276 Identities=14% Similarity=0.132 Sum_probs=200.2
Q ss_pred HhhhccccccccccCcEEEEeeCCCCeEEEeCCc-----ceeecccCCCcEEEEEEeCC---EEEEEECCCeEEEEecCC
Q 001349 771 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE-----LVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRG 842 (1094)
Q Consensus 771 ~~~~~~~~~~~~~d~~~l~s~s~dg~I~vWd~~~-----~~~~~~~h~~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t 842 (1094)
.|+..+....|++++.+|++|+.||+|+|||+.. ......+|.++|.+++|+|+ +|++|+.||+|++|+...
T Consensus 9 ~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~ 88 (342)
T d1yfqa_ 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG 88 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred CCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccc
Confidence 3445566778888999999999999999999852 12333479999999999974 899999999999999988
Q ss_pred CcceeEEEecccC-CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEE
Q 001349 843 SILHLIQQIREHT-KAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIK 921 (1094)
Q Consensus 843 ~~~~~~~~l~~H~-~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~ 921 (1094)
+ ........+. .......+.+++..+++++.|+++++||++++............. ..........+.+++..++
T Consensus 89 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 164 (342)
T d1yfqa_ 89 S--PSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN--NTKVKNKIFTMDTNSSRLI 164 (342)
T ss_dssp S--SSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS--SSSSCCCEEEEEECSSEEE
T ss_pred c--cccccccccccccccccccccccccccccccccccceeeccccccceeeecccccc--cccceeeeeeeeccCCcee
Confidence 7 3444444444 344555667788999999999999999987543111111110100 0001112234788999999
Q ss_pred EEEeCCeEEEEcCCC---------------CceEEEEe---CCEEEEEEcCCeEEEEECCCCceeEE---------eccc
Q 001349 922 VHLRNGKTKLLNSSK---------------YPKCLALV---QGKVYCGCQDGAIQEIDLATGTFATI---------QTGH 974 (1094)
Q Consensus 922 ~~~~~g~i~l~~~~~---------------~v~~l~~s---~~~l~sgs~Dg~I~iwDl~~~~~~~~---------~~~~ 974 (1094)
.+..++.+++|+... .+.+.... +..+++++.||.+.+|+......... ....
T Consensus 165 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 244 (342)
T d1yfqa_ 165 VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN 244 (342)
T ss_dssp EEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCC
T ss_pred eecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeec
Confidence 999999999998521 23333333 24689999999999999875432211 1111
Q ss_pred eeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecC--CCCEEEEEEeCCEEEEEEcCCeEEEEECC
Q 001349 975 RKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPT--LSEVRAMVVSSELVYLGCKGGTVEIWDQK 1051 (1094)
Q Consensus 975 ~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~--~~~v~~l~~spd~l~sgs~dg~I~vwd~~ 1051 (1094)
....+|...|++++|+|++.++++++.|| .|++||+.+++.+..+.+ ...+.+++++++++++|+.|+++++|...
T Consensus 245 ~~~~~~~~~v~~l~~sp~~~~lasg~~Dg-~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~ 322 (342)
T d1yfqa_ 245 LKDTNLAYPVNSIEFSPRHKFLYTAGSDG-IISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp TTCCSSCCCEEEEEECTTTCCEEEEETTS-CEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred cCCCcccccceeEEecCCccEEEEECCCC-EEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence 22346778899999999999999999997 999999999999998874 34466666666699999999998888654
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=3.7e-22 Score=217.96 Aligned_cols=233 Identities=14% Similarity=0.140 Sum_probs=186.2
Q ss_pred EEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecC
Q 001349 788 VLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS 866 (1094)
Q Consensus 788 l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspd 866 (1094)
|+||+.||+|++||..+ ...+|.+.|.++.|+++ .+++++.|++|++|++.+. .+...+..+.++++
T Consensus 24 l~sgs~Dg~v~~Wd~~~---~~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~---------~~~~~~~~~~~~~~ 91 (287)
T d1pgua2 24 LISGSYDGRIMEWSSSS---MHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKH---------EFGSQPKVASANND 91 (287)
T ss_dssp TEEEETTSCEEETTTTE---EECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEE---------ECSSCEEEEEECSS
T ss_pred EEEEeCCCeEEEEECCC---CCCCCCCCEEEEEecCCCeEEEEeecccccccccccc---------ccccceeeeeeccC
Confidence 89999999999999875 34689999999999986 8899999999999998654 13445778889988
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCC-eEEEEcC-----------
Q 001349 867 GEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNG-KTKLLNS----------- 934 (1094)
Q Consensus 867 g~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g-~i~l~~~----------- 934 (1094)
+..+++++ ++.+.+|+..+++.. .......+ ..++++++..++++..++ .+++|+.
T Consensus 92 ~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~---------~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~ 159 (287)
T d1pgua2 92 GFTAVLTN-DDDLLILQSFTGDII--KSVRLNSP---------GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKT 159 (287)
T ss_dssp SEEEEEET-TSEEEEEETTTCCEE--EEEECSSC---------EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSS
T ss_pred CceEEEee-cccceeeeccceeee--eeccccce---------eeeeeccCcceeeeccccceeeeeeccccceeeeeee
Confidence 87777655 556889998887532 22222222 234788888888888775 5788863
Q ss_pred --CCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCC----------ccEEEEEE
Q 001349 935 --SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNG----------LVYTASTS 1000 (1094)
Q Consensus 935 --~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~----------~~~las~s 1000 (1094)
...+.+++|++ ..+++|+.||.|++||+.++.... ..+.+|..+|++++|+|. +.++++++
T Consensus 160 ~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~-----~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs 234 (287)
T d1pgua2 160 PLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKT-----SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGS 234 (287)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-----CCSCCCSSCEEEEEECCCC------CCSCCEEEEEE
T ss_pred ccCCceeEEEeccCccccccccccccccceeeccccccc-----ccccccccccceeeecccccccccccCCCCeeEeec
Confidence 35689999986 469999999999999999887653 346789999999999864 46899999
Q ss_pred CCCCEEEEEECCC-CeEEEEec-CCCCEEEEEEeCC-EEEEEEcCCeEEEEEC
Q 001349 1001 LDGAAVKMWSTSN-YNMVGSLP-TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQ 1050 (1094)
Q Consensus 1001 ~Dg~~I~iwd~~~-~~~~~~~~-~~~~v~~l~~spd-~l~sgs~dg~I~vwd~ 1050 (1094)
.|+ +|++||+.+ ++.+..+. |...|++++|+|+ .+++++.||+|++||+
T Consensus 235 ~D~-~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 235 LDT-NIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 286 (287)
T ss_dssp TTS-CEEEEESSCTTCCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred CCC-eEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence 997 999999976 45566555 7889999999998 8999999999999995
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.86 E-value=6.9e-20 Score=212.93 Aligned_cols=302 Identities=8% Similarity=-0.005 Sum_probs=203.7
Q ss_pred CcEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEe---cccCCC
Q 001349 785 MVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQI---REHTKA 857 (1094)
Q Consensus 785 ~~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l---~~H~~~ 857 (1094)
..++++.+.||+|+|||.. +.+..+..| ..+..++|||| ++++++.||+|++||+.+++......+ .+|.+.
T Consensus 32 ~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~ 110 (426)
T d1hzua2 32 NLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSV 110 (426)
T ss_dssp GEEEEEETTTTEEEEEETTTCSEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEE
T ss_pred eEEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcce
Confidence 3367889999999999998 455666666 46999999998 899999999999999998854333333 467777
Q ss_pred eEEEEEecCCCEEEEE-eCCCcEEEEECCCCceEEEEecccCccceeeeecC----ceEEEeeCCCeEEEEEeC-CeEEE
Q 001349 858 VTGLAILQSGEMLYSG-SLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSN----SILCFIPQGAGIKVHLRN-GKTKL 931 (1094)
Q Consensus 858 V~sv~fspdg~~LaSg-s~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~----~~~~fspdg~~l~~~~~~-g~i~l 931 (1094)
+.+++|+|||++++++ ..++++++||..++........ +...+....+.+ ..+.+++++..+.....+ +.+.+
T Consensus 111 ~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~ 189 (426)
T d1hzua2 111 ESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVST-RGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLL 189 (426)
T ss_dssp EECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEEC-CEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred EEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeec-cCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 8888999999987554 5789999999999863332221 122222222211 124567777776665544 33333
Q ss_pred E-------------cCCCCceEEEEeC--CEEEEE-EcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEe--CCc
Q 001349 932 L-------------NSSKYPKCLALVQ--GKVYCG-CQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVH--NGL 993 (1094)
Q Consensus 932 ~-------------~~~~~v~~l~~s~--~~l~sg-s~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs--~~~ 993 (1094)
+ .....+..+.+++ ..++++ ..+..+.+||..+++........ .+..+.....+. ..+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 265 (426)
T d1hzua2 190 VNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG----KTPHPGRGANFVHPKYG 265 (426)
T ss_dssp EECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECS----SCCCCSCCEEEEETTTE
T ss_pred EEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccC----CcccccceeeeecCCCC
Confidence 2 2345567788875 344444 46677999999999887543321 112222233332 222
Q ss_pred cEEEE-EECCCCEEEEEECCC-------CeEEEEec-CCCCEEEEEEeCC--EEEE-------EEcCCeEEEEECCCCcE
Q 001349 994 VYTAS-TSLDGAAVKMWSTSN-------YNMVGSLP-TLSEVRAMVVSSE--LVYL-------GCKGGTVEIWDQKRQIR 1055 (1094)
Q Consensus 994 ~~las-~s~Dg~~I~iwd~~~-------~~~~~~~~-~~~~v~~l~~spd--~l~s-------gs~dg~I~vwd~~t~~~ 1055 (1094)
..... .+.| +.+.+|+... ++....+. |...+..++|+|| ++++ ++.+++|+|||+.+++.
T Consensus 266 ~~~~~~~~~d-~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~ 344 (426)
T d1hzua2 266 PVWSTSHLGD-GSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDA 344 (426)
T ss_dssp EEEEEECTTT-CEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTS
T ss_pred ceEEeccCCC-ceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCc
Confidence 22222 2234 4788887654 46777777 6677999999999 6663 45678999999999887
Q ss_pred EEEec--------ccCCcceEEEEEcCCCCEEEEE-----eCCCcEEEEeC
Q 001349 1056 IETLQ--------TGTSGKVQCMALDDNEEFLVIG-----TSDGRIQAWGL 1093 (1094)
Q Consensus 1056 ~~~l~--------~~h~~~I~~l~~Spdg~~L~sg-----s~DG~I~iWdl 1093 (1094)
..++. ..|...|..++|||||++++.+ +.+|+|+|||.
T Consensus 345 ~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~ 395 (426)
T d1hzua2 345 KYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD 395 (426)
T ss_dssp CCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEET
T ss_pred CeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEEC
Confidence 65542 2455679999999999977433 35889999996
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.85 E-value=1e-18 Score=190.58 Aligned_cols=258 Identities=11% Similarity=0.132 Sum_probs=199.3
Q ss_pred EEEeeCCCCeEEEeCCcc--eeecccCCCcEEEEEEeCC--EE-EEEECCCeEEEEecCCCcceeEEEecccCCCeEEEE
Q 001349 788 VLSNGHDSSADFWNHREL--VHVDSSENGKVLSIACFRD--KI-FSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLA 862 (1094)
Q Consensus 788 l~s~s~dg~I~vWd~~~~--~~~~~~h~~~V~~l~fspd--~L-aSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~ 862 (1094)
+++++.|++|.+||..+. ...+. ..+.+..++|+|| +| ++++.++.|++||+.++ ..+.++..|. .+..+.
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~-~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~--~~~~~~~~~~-~~~~~~ 80 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIP-VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN--NVIATVPAGS-SPQGVA 80 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT--EEEEEEECSS-SEEEEE
T ss_pred EEEECCCCEEEEEECCCCeEEEEEE-CCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC--ceeeeeeccc-cccccc
Confidence 456788999999998743 33333 3456789999997 55 67778999999999999 7888887765 468899
Q ss_pred EecCCCEEE-EEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEE
Q 001349 863 ILQSGEMLY-SGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCL 941 (1094)
Q Consensus 863 fspdg~~La-Sgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l 941 (1094)
|++++..++ ++..++.+.+|+..+++ .............+. |+|+|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------~~~dg~~~--------------------- 130 (301)
T d1l0qa2 81 VSPDGKQVYVTNMASSTLSVIDTTSNT--VAGTVKTGKSPLGLA-------LSPDGKKL--------------------- 130 (301)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTE--EEEEEECSSSEEEEE-------ECTTSSEE---------------------
T ss_pred cccccccccccccccceeeecccccce--eeeeccccccceEEE-------eecCCCee---------------------
Confidence 999988655 55567899999999874 222223333444444 88888763
Q ss_pred EEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec
Q 001349 942 ALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP 1021 (1094)
Q Consensus 942 ~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~ 1021 (1094)
++++..++.+.+|+..++....... +...+..+.+++++..++.++.++..+.+|+.........+.
T Consensus 131 ------~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (301)
T d1l0qa2 131 ------YVTNNGDKTVSVINTVTKAVINTVS-------VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK 197 (301)
T ss_dssp ------EEEETTTTEEEEEETTTTEEEEEEE-------CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ------eeeeccccceeeeeccccceeeecc-------cCCCceEEEeeccccceeeecccccccccccccceeeeeccc
Confidence 4556678899999999988764322 234678899999998888888877799999999998888888
Q ss_pred CCCCEEEEEEeCC--EEEEEE---cCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEE-EEEeCCCcEEEEeCC
Q 001349 1022 TLSEVRAMVVSSE--LVYLGC---KGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFL-VIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1022 ~~~~v~~l~~spd--~l~sgs---~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L-~sgs~DG~I~iWdls 1094 (1094)
....+..++++++ .+++++ .++.|++||..+++.+..+. +...+.+++|+|||++| ++++.||+|++||++
T Consensus 198 ~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~--~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~ 274 (301)
T d1l0qa2 198 VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP--VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTA 274 (301)
T ss_dssp CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE--CCSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred ccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEc--CCCCEEEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence 8888899999988 444433 34789999999999998884 34568999999999987 577789999999974
|
| >d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.80 E-value=1.3e-20 Score=163.27 Aligned_cols=76 Identities=25% Similarity=0.423 Sum_probs=70.3
Q ss_pred CCCCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHhCCCC
Q 001349 158 HTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGG 234 (1094)
Q Consensus 158 ~~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~~~~~ 234 (1094)
.++|++|.||||+++|+|||+++||||||+.||.+|+..++..||.|++.+...++. ||..|+++|++|+++++..
T Consensus 2 ~eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~-pN~~L~~~I~~~l~~~~~~ 77 (80)
T d2c2la2 2 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLI-PNLAMKEVIDAFISENGWV 77 (80)
T ss_dssp CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCE-ECHHHHHHHHHHHTTCSCS
T ss_pred CCCCccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcCCccCCCccccccccccc-cHHHHHHHHHHHHHHCCCc
Confidence 467889999999999999999999999999999999988777899999999988897 9999999999999887753
|
| >d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: E3 ubiquitin ligase PUB14 species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.80 E-value=1.3e-20 Score=162.49 Aligned_cols=73 Identities=47% Similarity=0.894 Sum_probs=68.6
Q ss_pred CCCCceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHhCC
Q 001349 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNP 232 (1094)
Q Consensus 159 ~~~~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~~~ 232 (1094)
++|++|.||||+++|+|||+++|||+||+.||++|++.+...||.|+.++...++. ||+.|+++|++|+++++
T Consensus 4 eiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~-pN~~L~~~I~~~~~~~~ 76 (78)
T d1t1ha_ 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLT-PNYVLKSLIALWCESNG 76 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCE-ECTTTHHHHHHHHHHSC
T ss_pred CCCccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHCCCCCCcccccCCccccc-chHHHHHHHHHHHHHhC
Confidence 57789999999999999999999999999999999988677899999999999997 99999999999999876
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.79 E-value=4.1e-18 Score=188.48 Aligned_cols=265 Identities=11% Similarity=0.042 Sum_probs=179.5
Q ss_pred cEEEEeeCCCCeEEEeCCc--ceeeccc--CCCcEEEEEEeCC--EE-EEEECCCeEEEEecCCCcceeEEEecccCC--
Q 001349 786 VKVLSNGHDSSADFWNHRE--LVHVDSS--ENGKVLSIACFRD--KI-FSGHSDGTIKVWTGRGSILHLIQQIREHTK-- 856 (1094)
Q Consensus 786 ~~l~s~s~dg~I~vWd~~~--~~~~~~~--h~~~V~~l~fspd--~L-aSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~-- 856 (1094)
.++++++.|++|.|||..+ ....+.. +...+.+++|+|| ++ ++++.+|.|.+||+.++ +.+..+..+..
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~--~~~~~~~~~~~~~ 79 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG--ETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC--CEEEEEECCBTTE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCC--cEEEEEecCCCcc
Confidence 4799999999999999984 3443433 4466889999997 54 67788999999999999 67776665543
Q ss_pred ---CeEEEEEecCCCEEEEEeC------------CCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEE
Q 001349 857 ---AVTGLAILQSGEMLYSGSL------------DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIK 921 (1094)
Q Consensus 857 ---~V~sv~fspdg~~LaSgs~------------DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~ 921 (1094)
.+..++|+||++++++++. ++.+.+||..+++ ..........+..+. |+|||+.+
T Consensus 80 ~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~~-------~s~dg~~l- 149 (337)
T d1pbyb_ 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS--RRKAFEAPRQITMLA-------WARDGSKL- 149 (337)
T ss_dssp EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE--EEEEEECCSSCCCEE-------ECTTSSCE-
T ss_pred cccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCe--EEEeccccCCceEEE-------EcCCCCEE-
Confidence 4567999999999988863 5778889998874 233333344455554 88888864
Q ss_pred EEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecC--------------CCCCeEEE
Q 001349 922 VHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLG--------------KANPVHAL 987 (1094)
Q Consensus 922 ~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~--------------h~~~V~sl 987 (1094)
++++ +.+.+||..+++............. ........
T Consensus 150 ---------------------------~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (337)
T d1pbyb_ 150 ---------------------------YGLG--RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMAT 200 (337)
T ss_dssp ---------------------------EEES--SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEE
T ss_pred ---------------------------EEEc--CCcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeee
Confidence 3333 3456778777766543322110000 00000000
Q ss_pred ---EEeCCccEEEEEECCCCEEEEEECCCCeEEEEe--cCCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEeccc
Q 001349 988 ---QVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSL--PTLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTG 1062 (1094)
Q Consensus 988 ---~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~--~~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~ 1062 (1094)
....+.........+ ..+.+||..++...... .+...+..+.++++.....+.++.|++||+.+++.+..+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-- 277 (337)
T d1pbyb_ 201 PFYTARKDIDPADPTAYR-TGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVP-- 277 (337)
T ss_dssp EEEEEBTTSCTTSGGGEE-EEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEESEEEEEETTTTEEEEEEE--
T ss_pred eeeeeeeccceeeecccC-ccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEccccEEEEECCCCcEEEEEc--
Confidence 001111111111112 27999999988765443 2567788899999832223346899999999999999885
Q ss_pred CCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1063 TSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1063 h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
+...+.+++|+|||++|++++.||+|++||+.
T Consensus 278 ~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~ 309 (337)
T d1pbyb_ 278 LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAE 309 (337)
T ss_dssp CSSCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 55678999999999999999999999999973
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.78 E-value=1.3e-17 Score=193.46 Aligned_cols=263 Identities=10% Similarity=0.034 Sum_probs=182.9
Q ss_pred EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceee
Q 001349 825 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNL 904 (1094)
Q Consensus 825 ~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v 904 (1094)
++++.+.||+|+|||+.++ +.+.++..|. .+..++|||||+++++++.||+|++||+.+++...............+
T Consensus 34 ~~V~~~~dg~v~vwD~~t~--~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~ 110 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSK--KIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSV 110 (426)
T ss_dssp EEEEETTTTEEEEEETTTC--SEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEE
T ss_pred EEEEEcCCCEEEEEECCCC--cEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcce
Confidence 5688889999999999999 7889998774 699999999999999999999999999999874333322222222233
Q ss_pred eecCceEEEeeCCCeEEEEE-eCCeEEEEcCCCCc------------eEEEEe--CC-EEEEEEcCCeEEEEECCCCcee
Q 001349 905 AVSNSILCFIPQGAGIKVHL-RNGKTKLLNSSKYP------------KCLALV--QG-KVYCGCQDGAIQEIDLATGTFA 968 (1094)
Q Consensus 905 ~~~~~~~~fspdg~~l~~~~-~~g~i~l~~~~~~v------------~~l~~s--~~-~l~sgs~Dg~I~iwDl~~~~~~ 968 (1094)
.++. .|+|||+++++.. .++.+.+|+....- ....+. +. ..++++.|+...+|.......+
T Consensus 111 ~~s~---~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i 187 (426)
T d1hzua2 111 ESSK---FKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKV 187 (426)
T ss_dssp EECC---STTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred EEee---eecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeE
Confidence 2222 2889999876554 67889999864321 111222 11 2455566666555544433222
Q ss_pred EEecc------ceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCC---CCEEEEEEe--CC-E-
Q 001349 969 TIQTG------HRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTL---SEVRAMVVS--SE-L- 1035 (1094)
Q Consensus 969 ~~~~~------~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~---~~v~~l~~s--pd-~- 1035 (1094)
..... .....++...+..+.|++++.++..+..+...+.+|+..+++.+..+... .......+. .. .
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (426)
T d1hzua2 188 LLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPV 267 (426)
T ss_dssp EEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEE
T ss_pred EEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCce
Confidence 11110 01234567788999999999998888877779999999999988877621 222223322 22 2
Q ss_pred -EEEEEcCCeEEEEECCC-------CcEEEEecccCCcceEEEEEcCCCCEEEE-------EeCCCcEEEEeCC
Q 001349 1036 -VYLGCKGGTVEIWDQKR-------QIRIETLQTGTSGKVQCMALDDNEEFLVI-------GTSDGRIQAWGLS 1094 (1094)
Q Consensus 1036 -l~sgs~dg~I~vwd~~t-------~~~~~~l~~~h~~~I~~l~~Spdg~~L~s-------gs~DG~I~iWdls 1094 (1094)
.+..+.|+.+.+|+... ++....+ .+|...+..++|+|||++|++ ++.|++|+|||+.
T Consensus 268 ~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l-~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~ 340 (426)
T d1hzua2 268 WSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL-QGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLK 340 (426)
T ss_dssp EEEECTTTCEEEEEECCTTTCTTTBTSEEEEE-ECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETT
T ss_pred EEeccCCCceEEEeeccccccccccceEeEEE-ecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECC
Confidence 33345688999998654 4677888 589999999999999999994 5568899999973
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.77 E-value=1.3e-17 Score=185.18 Aligned_cols=266 Identities=9% Similarity=0.033 Sum_probs=176.6
Q ss_pred EEEeCC--EEEEEECCCeEEEEecCCCcceeEEEec-ccCCCeEEEEEecCCCEE-EEEeCCCcEEEEECCCCceEEEEe
Q 001349 819 IACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIR-EHTKAVTGLAILQSGEML-YSGSLDKTARVWSIGNEEIHCVQV 894 (1094)
Q Consensus 819 l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~-~H~~~V~sv~fspdg~~L-aSgs~DgtI~vWdi~~~~~~~~~~ 894 (1094)
++|+++ ++++++.|++|.|||+.++ +.+.++. .|...+.+++|+|||+++ ++++.+++|++||+.+++... .
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~--~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~--~ 77 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASD--TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF--H 77 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTT--EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE--E
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCC--CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeee--e
Confidence 356775 9999999999999999999 7888876 466678999999999987 555678999999999985332 2
Q ss_pred cccCccceeeeecCceEEEeeCCCeEEEEEe------------CCeEEEEcCC--------------CCceEEEEeC-CE
Q 001349 895 HDIKDQIQNLAVSNSILCFIPQGAGIKVHLR------------NGKTKLLNSS--------------KYPKCLALVQ-GK 947 (1094)
Q Consensus 895 ~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~------------~g~i~l~~~~--------------~~v~~l~~s~-~~ 947 (1094)
.............+..+.|+|||+.+.+... ++.+.+|+.. ..+..+.+.+ +.
T Consensus 78 ~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (346)
T d1jmxb_ 78 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 157 (346)
T ss_dssp EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC
T ss_pred ecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCE
Confidence 2222222233334455669999999877653 3455566532 2233333433 33
Q ss_pred EEEEEcCCeEEEEECCCCceeEEeccceee-------------cC--CCCCeEE----EEEeCCccEEEEEECCCCEEEE
Q 001349 948 VYCGCQDGAIQEIDLATGTFATIQTGHRKL-------------LG--KANPVHA----LQVHNGLVYTASTSLDGAAVKM 1008 (1094)
Q Consensus 948 l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~-------------~~--h~~~V~s----l~fs~~~~~las~s~Dg~~I~i 1008 (1094)
+++. ++.+.+||+.+++........... .. ....+.. ..+......+.+...+ ..+.+
T Consensus 158 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 234 (346)
T d1jmxb_ 158 LYVA--GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLL-YGYLS 234 (346)
T ss_dssp EEEE--SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEE-EEEEE
T ss_pred EEEe--CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCC-ceEEE
Confidence 4443 356889999888877543221100 00 0001110 0111222233333333 37899
Q ss_pred EECCCCeEEEEec--CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeC
Q 001349 1009 WSTSNYNMVGSLP--TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTS 1084 (1094)
Q Consensus 1009 wd~~~~~~~~~~~--~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~ 1084 (1094)
||..++....... +...+..+.++++ +++.+. ++.|++||..+++.+..+.. ...+.+++|||||++|++++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~--~~~~~~va~s~DG~~l~v~~~ 311 (346)
T d1jmxb_ 235 VDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL--DHTYYCVAFDKKGDKLYLGGT 311 (346)
T ss_dssp EETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC--SSCCCEEEECSSSSCEEEESB
T ss_pred EECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcC--CCCEEEEEEcCCCCEEEEEeC
Confidence 9999887665443 6677888888887 444444 46899999999999988853 446999999999999999999
Q ss_pred CCcEEEEeCC
Q 001349 1085 DGRIQAWGLS 1094 (1094)
Q Consensus 1085 DG~I~iWdls 1094 (1094)
||.|++||+.
T Consensus 312 d~~v~v~D~~ 321 (346)
T d1jmxb_ 312 FNDLAVFNPD 321 (346)
T ss_dssp SSEEEEEETT
T ss_pred CCcEEEEECc
Confidence 9999999973
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.77 E-value=2e-18 Score=193.25 Aligned_cols=264 Identities=11% Similarity=0.112 Sum_probs=185.4
Q ss_pred ccccccccccCcEEEEeeCCC--CeEEEeCC-cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEE
Q 001349 775 LRKYSPLAFEMVKVLSNGHDS--SADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQ 849 (1094)
Q Consensus 775 ~~~~~~~~~d~~~l~s~s~dg--~I~vWd~~-~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~ 849 (1094)
.+....|++||+++++++.+. .|++||.. .....+..|.+.|.+++|+|+ +|++++.++.+++|+..++ ....
T Consensus 44 ~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~--~~~~ 121 (360)
T d1k32a3 44 RIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG--KPTV 121 (360)
T ss_dssp CEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC--CEEE
T ss_pred CEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeeecccccccceecccccccccccccc--ceee
Confidence 445677889999998877663 79999988 345667889999999999997 9999999999999999998 6777
Q ss_pred EecccCCCeEEEEEecCCCEEEEEe----------CCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCe
Q 001349 850 QIREHTKAVTGLAILQSGEMLYSGS----------LDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAG 919 (1094)
Q Consensus 850 ~l~~H~~~V~sv~fspdg~~LaSgs----------~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~ 919 (1094)
.+..|...+.+++|+|||++|+.++ .++.+++||+.+++ ......+...+..+. |+|||+.
T Consensus 122 ~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~--~~~~~~~~~~~~~~~-------~spdg~~ 192 (360)
T d1k32a3 122 IERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK--IFAATTENSHDYAPA-------FDADSKN 192 (360)
T ss_dssp EEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE--EEECSCSSSBEEEEE-------ECTTSCE
T ss_pred eeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCc--eeeeccccccccccc-------ccCCCCE
Confidence 8888999999999999999998654 34569999999874 334444455555555 9999999
Q ss_pred EEEEEeCCeEEEEcCCCC---------ceEEEEeCC------------EEEEEEcCC-----eEEEEECCCCceeEEecc
Q 001349 920 IKVHLRNGKTKLLNSSKY---------PKCLALVQG------------KVYCGCQDG-----AIQEIDLATGTFATIQTG 973 (1094)
Q Consensus 920 l~~~~~~g~i~l~~~~~~---------v~~l~~s~~------------~l~sgs~Dg-----~I~iwDl~~~~~~~~~~~ 973 (1094)
++..+.++.+.+|+.... +..+.+..+ .+.++..+. .+..++...+...
T Consensus 193 l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 267 (360)
T d1k32a3 193 LYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYR----- 267 (360)
T ss_dssp EEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEE-----
T ss_pred EEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCcee-----
Confidence 999998888888875322 122222111 011111110 1222222222211
Q ss_pred ceeecCCCCCeEEEEEe---CCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEE
Q 001349 974 HRKLLGKANPVHALQVH---NGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIW 1048 (1094)
Q Consensus 974 ~~~~~~h~~~V~sl~fs---~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vw 1048 (1094)
.+..+...+..+.+. +...++++++.++ .+++||+.+++... +...|.+++|+|| +|++++.||.|++|
T Consensus 268 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~d~~~~~~~~---~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~ 341 (360)
T d1k32a3 268 --MIIPLESSILIYSVPVHGEFAAYYQGAPEKG-VLLKYDVKTRKVTE---VKNNLTDLRLSADRKTVMVRKDDGKIYTF 341 (360)
T ss_dssp --EEEECSSEEEEEECCCCCSHHHHHHCCCCCE-EEEEEETTTCCEEE---EEEEEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred --EeeecCCCceEEEEEecCCCeeEEEecCCCC-EEEEEECCCCeEEE---ecCCcCEEEECCCCCEEEEEECCCeEEEE
Confidence 122222333333332 3334455555554 99999999876543 2346899999999 89999999999999
Q ss_pred ECCCCcEEEEec
Q 001349 1049 DQKRQIRIETLQ 1060 (1094)
Q Consensus 1049 d~~t~~~~~~l~ 1060 (1094)
|+.++....++.
T Consensus 342 d~~~~~~~~~~~ 353 (360)
T d1k32a3 342 PLEKPEDERTVE 353 (360)
T ss_dssp ESSCTTSCEECC
T ss_pred ECCCCCcceEEE
Confidence 999998877773
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.74 E-value=1.6e-16 Score=184.68 Aligned_cols=235 Identities=9% Similarity=-0.034 Sum_probs=164.0
Q ss_pred cEEEEeeCCCCeEEEeCC--cceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEE---ecccCCCe
Q 001349 786 VKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQ---IREHTKAV 858 (1094)
Q Consensus 786 ~~l~s~s~dg~I~vWd~~--~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~---l~~H~~~V 858 (1094)
..+++.+.+|+|.|||.. +.+..+..| ..+..++|||| ++++++.||+|++||+.+++...+.. ..+|.+.+
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~ 111 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE 111 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEE
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeE
Confidence 356899999999999998 455666665 46999999998 99999999999999998875434433 34677778
Q ss_pred EEEEEecCCCEE-EEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCC
Q 001349 859 TGLAILQSGEML-YSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKY 937 (1094)
Q Consensus 859 ~sv~fspdg~~L-aSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~ 937 (1094)
.+..|+|||++| ++++.+++|++||..+++....... +...+.... +.+++...++
T Consensus 112 ~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~-~~~~~~~~~-------~~~~~~~~~v--------------- 168 (432)
T d1qksa2 112 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQST-RGMTYDEQE-------YHPEPRVAAI--------------- 168 (432)
T ss_dssp ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEEC-CEECTTTCC-------EESCCCEEEE---------------
T ss_pred EecccCCCCCEEEEEcCCCCeEEEEeCccccceeeecc-CCcccccee-------ccCCCceeEE---------------
Confidence 888899999976 7788899999999999864333221 112222222 3444433221
Q ss_pred ceEEEEeC--C-EEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCC
Q 001349 938 PKCLALVQ--G-KVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY 1014 (1094)
Q Consensus 938 v~~l~~s~--~-~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~ 1014 (1094)
.+++ . .+++...++.|.+||..+++..... ...+...+..+.|+|++.++++++.++..+.+||..++
T Consensus 169 ----~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~-----~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~ 239 (432)
T d1qksa2 169 ----LASHYRPEFIVNVKETGKILLVDYTDLNNLKTT-----EISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 239 (432)
T ss_dssp ----EECSSSSEEEEEETTTTEEEEEETTCSSEEEEE-----EEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred ----EECCCCCEEEEEEccCCeEEEEEccCCCcceEE-----EEcccCccccceECCCCCEEEEeccccceEEEeecccc
Confidence 1111 1 2556677899999999887755321 12345678899999999999888888889999999999
Q ss_pred eEEEEecC------CCCEEEEEEeCC-EEEEE--EcCCeEEEEECCCC
Q 001349 1015 NMVGSLPT------LSEVRAMVVSSE-LVYLG--CKGGTVEIWDQKRQ 1053 (1094)
Q Consensus 1015 ~~~~~~~~------~~~v~~l~~spd-~l~sg--s~dg~I~vwd~~t~ 1053 (1094)
+.+..+.. ........+... .+... ..++.|.+|+....
T Consensus 240 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~ 287 (432)
T d1qksa2 240 KLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPE 287 (432)
T ss_dssp EEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred eEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccc
Confidence 88877652 233444444444 22222 24788999986543
|
| >d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Ubiquitin conjugation factor E4A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=2.5e-18 Score=154.02 Aligned_cols=76 Identities=24% Similarity=0.402 Sum_probs=68.3
Q ss_pred CCCCCCceeccCccccccCcEEcCCc-ccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHhCCCC
Q 001349 157 KHTPPKDFVCPITTHIFDDPVTLETG-QTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGG 234 (1094)
Q Consensus 157 ~~~~~~~~~CpIc~~~~~dPv~~~cG-htfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~~~~~ 234 (1094)
..++|++|.||||+++|+|||+++|| |+||+.||.+|+.. +..||.|++++...++. ||..|+++|+.|++++...
T Consensus 16 ~~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~-~~~~P~~~~~l~~~~L~-pN~~Lr~~I~~~~~~~~~~ 92 (98)
T d1wgma_ 16 YADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIR-PNTELKEKIQRWLAERKQQ 92 (98)
T ss_dssp CCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSE-ECHHHHHHHHHHHHHSTTC
T ss_pred hcCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHh-cCCcccccccccchhhc-chHHHHHHHHHHHHHHHHh
Confidence 34788899999999999999999876 59999999999987 55799999999999997 9999999999999987644
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.72 E-value=1.9e-16 Score=175.61 Aligned_cols=262 Identities=8% Similarity=0.019 Sum_probs=182.9
Q ss_pred cccccCcEEEEeeCCCCeEEEeCCc--ceeecc-cCCCcEEEEEEeCC--E-EEEEECCCeEEEEecCCCcceeEEEecc
Q 001349 780 PLAFEMVKVLSNGHDSSADFWNHRE--LVHVDS-SENGKVLSIACFRD--K-IFSGHSDGTIKVWTGRGSILHLIQQIRE 853 (1094)
Q Consensus 780 ~~~~d~~~l~s~s~dg~I~vWd~~~--~~~~~~-~h~~~V~~l~fspd--~-LaSgs~Dg~I~vWd~~t~~~~~~~~l~~ 853 (1094)
+++.+++++++++.+++|.+||..+ ....+. .|...+.+++|+|| + +++++.++.|++||+.++ +.+..+..
T Consensus 3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~--~~~~~~~~ 80 (346)
T d1jmxb_ 3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC--KNTFHANL 80 (346)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT--EEEEEEES
T ss_pred cCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccC--eeeeeecc
Confidence 4677899999999999999999984 344444 45677899999997 4 567778999999999998 56665543
Q ss_pred cC------CCeEEEEEecCCCEEEEEe------------CCCcEEEEECCCCce-EEEEecccCccceeeeecCceEEEe
Q 001349 854 HT------KAVTGLAILQSGEMLYSGS------------LDKTARVWSIGNEEI-HCVQVHDIKDQIQNLAVSNSILCFI 914 (1094)
Q Consensus 854 H~------~~V~sv~fspdg~~LaSgs------------~DgtI~vWdi~~~~~-~~~~~~~~~~~V~~v~~~~~~~~fs 914 (1094)
.. ..+..++|+|||+++++++ .++.+.+||..+++. ..+........+..+. ++
T Consensus 81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 153 (346)
T d1jmxb_ 81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMR-------AA 153 (346)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEE-------EC
T ss_pred cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEE-------ec
Confidence 22 2456899999999998775 467788898877641 1122222222233222 44
Q ss_pred eCCCeEEEEEeCCeEEEEcCC-----------CCceEEEEe----------------------------CCEEEEEEcCC
Q 001349 915 PQGAGIKVHLRNGKTKLLNSS-----------KYPKCLALV----------------------------QGKVYCGCQDG 955 (1094)
Q Consensus 915 pdg~~l~~~~~~g~i~l~~~~-----------~~v~~l~~s----------------------------~~~l~sgs~Dg 955 (1094)
+++..++. ++.+.+|+.. ..+..+.++ ...+.++..++
T Consensus 154 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (346)
T d1jmxb_ 154 DDGSLYVA---GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY 230 (346)
T ss_dssp TTSCEEEE---SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred CCCEEEEe---CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCc
Confidence 44443322 2333344321 111001110 01134455667
Q ss_pred eEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC-
Q 001349 956 AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE- 1034 (1094)
Q Consensus 956 ~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd- 1034 (1094)
.+.+||..++.... .....|...+..+.+++++.+++....+ .|.+||..+++.+..+.+...+.+++|+||
T Consensus 231 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG 303 (346)
T d1jmxb_ 231 GYLSVDLKTGKTHT-----QEFADLTELYFTGLRSPKDPNQIYGVLN--RLAKYDLKQRKLIKAANLDHTYYCVAFDKKG 303 (346)
T ss_dssp EEEEEETTTCCEEE-----EEEEECSSCEEEEEECSSCTTEEEEEES--EEEEEETTTTEEEEEEECSSCCCEEEECSSS
T ss_pred eEEEEECCCCceEE-----EEeecccceeEEEEEeCCCCEEEEecCC--eEEEEECCCCcEEEEEcCCCCEEEEEEcCCC
Confidence 78999998887654 3344567788889998877777766533 899999999999999988788999999998
Q ss_pred -EEEEEEcCCeEEEEECCCCcEEEEec
Q 001349 1035 -LVYLGCKGGTVEIWDQKRQIRIETLQ 1060 (1094)
Q Consensus 1035 -~l~sgs~dg~I~vwd~~t~~~~~~l~ 1060 (1094)
++++++.||.|+|||..+++.+.++.
T Consensus 304 ~~l~v~~~d~~v~v~D~~t~~~i~~i~ 330 (346)
T d1jmxb_ 304 DKLYLGGTFNDLAVFNPDTLEKVKNIK 330 (346)
T ss_dssp SCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred CEEEEEeCCCcEEEEECccCCEEEEEE
Confidence 89999999999999999999998885
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=1.3e-15 Score=168.33 Aligned_cols=273 Identities=10% Similarity=0.122 Sum_probs=182.5
Q ss_pred EEEEeeCCCCeEEEeCCc--ceee--cccCCCcEEEEEEeCC--EE-EEEECCCeEEEEecCCCccee-EEEecccCCCe
Q 001349 787 KVLSNGHDSSADFWNHRE--LVHV--DSSENGKVLSIACFRD--KI-FSGHSDGTIKVWTGRGSILHL-IQQIREHTKAV 858 (1094)
Q Consensus 787 ~l~s~s~dg~I~vWd~~~--~~~~--~~~h~~~V~~l~fspd--~L-aSgs~Dg~I~vWd~~t~~~~~-~~~l~~H~~~V 858 (1094)
.+++++.|++|++|++.. .... ...|.+.|..++|+|| +| +++..|+.|++|++....... ......+...+
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p 85 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 85 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence 457788999999999862 2222 2368899999999998 66 455568999999997653222 22222355667
Q ss_pred EEEEEecCCCEEEEEeC-CCcEEEEECCCCceEE-EEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCC
Q 001349 859 TGLAILQSGEMLYSGSL-DKTARVWSIGNEEIHC-VQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSK 936 (1094)
Q Consensus 859 ~sv~fspdg~~LaSgs~-DgtI~vWdi~~~~~~~-~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~ 936 (1094)
..++|+|||++|++++. +++|.+|+........ .....+...+.++. |+|+++.+.
T Consensus 86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~-------~s~d~~~~~--------------- 143 (333)
T d1ri6a_ 86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSAN-------ISPDNRTLW--------------- 143 (333)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCE-------ECTTSSEEE---------------
T ss_pred eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEE-------eeecceeee---------------
Confidence 88999999999999885 6789999988765322 22233344455555 888888642
Q ss_pred CceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCe-
Q 001349 937 YPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYN- 1015 (1094)
Q Consensus 937 ~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~- 1015 (1094)
.....+..|.+|+.........................++|++++.+............+|+.....
T Consensus 144 ------------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 211 (333)
T d1ri6a_ 144 ------------VPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG 211 (333)
T ss_dssp ------------EEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTS
T ss_pred ------------ccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeeccccc
Confidence 3333456788888776554432222122333445678899999988887776666688888865321
Q ss_pred ---EEEEec-------CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCCCcEEEEec--ccCCcceEEEEEcCCCCEEE
Q 001349 1016 ---MVGSLP-------TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKRQIRIETLQ--TGTSGKVQCMALDDNEEFLV 1080 (1094)
Q Consensus 1016 ---~~~~~~-------~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t~~~~~~l~--~~h~~~I~~l~~Spdg~~L~ 1080 (1094)
...... .......++++++ .++.+..++.+.+|++........+. ..+...+.+++|+|||++|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~ 291 (333)
T d1ri6a_ 212 NIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLI 291 (333)
T ss_dssp CCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEE
T ss_pred ceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEE
Confidence 222221 2345677889988 45556678899999987654332221 12445678999999999987
Q ss_pred EEe-CCCcEEEEeC
Q 001349 1081 IGT-SDGRIQAWGL 1093 (1094)
Q Consensus 1081 sgs-~DG~I~iWdl 1093 (1094)
+++ .+++|.+|++
T Consensus 292 va~~~~~~v~v~~i 305 (333)
T d1ri6a_ 292 AAGQKSHHISVYEI 305 (333)
T ss_dssp EECTTTCEEEEEEE
T ss_pred EEECCCCeEEEEEE
Confidence 765 4689999965
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.71 E-value=8e-15 Score=165.24 Aligned_cols=276 Identities=10% Similarity=0.025 Sum_probs=189.5
Q ss_pred ccCCCcEEEEEEeCC--EEEEE-----ECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEe--------
Q 001349 810 SSENGKVLSIACFRD--KIFSG-----HSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGS-------- 874 (1094)
Q Consensus 810 ~~h~~~V~~l~fspd--~LaSg-----s~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs-------- 874 (1094)
..+.+++..++++|| .++.. +.++.|.+||..++ +.+.++..+... .++|+|||++|++++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg--~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~ 92 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSG--SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAK 92 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCC--CEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccc
Confidence 457888999999997 44433 34567999999999 678888766544 799999999999875
Q ss_pred --CCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeC--CeEEEEcCC--------CCceEEE
Q 001349 875 --LDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRN--GKTKLLNSS--------KYPKCLA 942 (1094)
Q Consensus 875 --~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~--g~i~l~~~~--------~~v~~l~ 942 (1094)
.++.|.+||..+++...... ........+...+..+.|+++++.+.+..++ +.+.+|+.. ..+.++.
T Consensus 93 ~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (373)
T d2madh_ 93 GKRTDYVEVFDPVTFLPIADIE-LPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYH 171 (373)
T ss_pred cccceEEEEEECCCCcEEEEEe-cCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEE
Confidence 46789999999986433222 2233334444455667799999988777665 455666542 3355666
Q ss_pred EeC---CEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEE
Q 001349 943 LVQ---GKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGS 1019 (1094)
Q Consensus 943 ~s~---~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~ 1019 (1094)
+++ ..+++.+.|+.+.+||..++.............++......+.+++++.++.. +.++ .+.+|+..++.....
T Consensus 172 ~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~~~~~~~~~ 249 (373)
T d2madh_ 172 IHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWP-VYSG-KILQADISAAGATNK 249 (373)
T ss_pred EecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEe-cCCc-eEEEEEcCCCeEEEE
Confidence 654 23678899999999999988776544322222223333445566676665544 4454 899999887654322
Q ss_pred ec---C----------CCCEEEEEEeCC------------EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcC
Q 001349 1020 LP---T----------LSEVRAMVVSSE------------LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDD 1074 (1094)
Q Consensus 1020 ~~---~----------~~~v~~l~~spd------------~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Sp 1074 (1094)
.. . ......++++++ .++....++.+.+||..+++.+..+. +...+.+++|+|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~--~~~~~~~~a~sp 327 (373)
T d2madh_ 250 APIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS--LGHDVDAISVAQ 327 (373)
T ss_pred EeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec--CCCCeeEEEECC
Confidence 21 1 122233444444 34455667889999999999999885 556799999999
Q ss_pred CCCE--EEEEeCCCcEEEEeCC
Q 001349 1075 NEEF--LVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1075 dg~~--L~sgs~DG~I~iWdls 1094 (1094)
||+. +++++.||+|++||+.
T Consensus 328 DG~~~l~vt~~~d~~v~v~D~~ 349 (373)
T d2madh_ 328 DGGPDLYALSAGTEVLHIYDAG 349 (373)
T ss_pred CCCEEEEEEeCCCCeEEEEECC
Confidence 9984 4688999999999974
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.70 E-value=4.7e-15 Score=172.01 Aligned_cols=202 Identities=11% Similarity=-0.013 Sum_probs=150.8
Q ss_pred EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceee
Q 001349 825 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNL 904 (1094)
Q Consensus 825 ~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v 904 (1094)
++++.+.||+|.|||..++ +++..+..| ..+..++|||||+++++++.||+|++||+.+++...............+
T Consensus 34 ~~v~~~d~g~v~v~D~~t~--~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~ 110 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTY--EIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI 110 (432)
T ss_dssp EEEEETTTTEEEEEETTTC--CEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEE
T ss_pred EEEEEcCCCEEEEEECCCC--cEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCe
Confidence 4689999999999999999 788888876 4699999999999999999999999999998764333322222222233
Q ss_pred eecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEecccee-----ecC
Q 001349 905 AVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRK-----LLG 979 (1094)
Q Consensus 905 ~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~-----~~~ 979 (1094)
.+++ .|+|||+++ +++++.++.|++||..+++.......... ...
T Consensus 111 ~~s~---~~SpDG~~l---------------------------~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~ 160 (432)
T d1qksa2 111 ETSK---MEGWEDKYA---------------------------IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH 160 (432)
T ss_dssp EECC---STTCTTTEE---------------------------EEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEE
T ss_pred EEec---ccCCCCCEE---------------------------EEEcCCCCeEEEEeCccccceeeeccCCccccceecc
Confidence 3222 178899864 56788899999999999998866543322 123
Q ss_pred CCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEE--EEecCCCCEEEEEEeCC--EEEEEE-cCCeEEEEECCCCc
Q 001349 980 KANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMV--GSLPTLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQKRQI 1054 (1094)
Q Consensus 980 h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~--~~~~~~~~v~~l~~spd--~l~sgs-~dg~I~vwd~~t~~ 1054 (1094)
+......+.+++++..++....+.+.|.+||..+++.. ..+.+...+..++|+|| ++++++ .++.+.+||..+++
T Consensus 161 ~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~ 240 (432)
T d1qksa2 161 PEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK 240 (432)
T ss_dssp SCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred CCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccce
Confidence 45667788999888776555444459999999887644 45567788999999999 566555 56789999998877
Q ss_pred EEEEe
Q 001349 1055 RIETL 1059 (1094)
Q Consensus 1055 ~~~~l 1059 (1094)
.+..+
T Consensus 241 ~~~~~ 245 (432)
T d1qksa2 241 LVAIE 245 (432)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 66554
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.68 E-value=1.7e-14 Score=156.51 Aligned_cols=221 Identities=11% Similarity=0.141 Sum_probs=169.7
Q ss_pred EEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEE-EEEeCCCcEEEEECCCCceEEEEecccCccceee
Q 001349 826 IFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEML-YSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNL 904 (1094)
Q Consensus 826 LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~L-aSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v 904 (1094)
+++++.|++|.|||+.++ +.+.++.. ...+..++|+|||++| ++++.+++|++||+.+++. +........+..+
T Consensus 5 yV~~~~~~~v~v~D~~t~--~~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~--~~~~~~~~~~~~~ 79 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSN--KVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV--IATVPAGSSPQGV 79 (301)
T ss_dssp EEEETTTTEEEEEETTTT--EEEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE--EEEEECSSSEEEE
T ss_pred EEEECCCCEEEEEECCCC--eEEEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCce--eeeeecccccccc
Confidence 456789999999999999 77777764 4567899999999987 5667899999999999853 2222222333444
Q ss_pred eecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCe
Q 001349 905 AVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPV 984 (1094)
Q Consensus 905 ~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V 984 (1094)
. |++++..+ ++++..++.+.+||..+++.... +. +....
T Consensus 80 ~-------~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~ 118 (301)
T d1l0qa2 80 A-------VSPDGKQV---------------------------YVTNMASSTLSVIDTTSNTVAGT------VK-TGKSP 118 (301)
T ss_dssp E-------ECTTSSEE---------------------------EEEETTTTEEEEEETTTTEEEEE------EE-CSSSE
T ss_pred c-------cccccccc---------------------------cccccccceeeecccccceeeee------cc-ccccc
Confidence 4 77777753 45667788999999999887633 22 33567
Q ss_pred EEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEE-cCCeEEEEECCCCcEEEEecc
Q 001349 985 HALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGC-KGGTVEIWDQKRQIRIETLQT 1061 (1094)
Q Consensus 985 ~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs-~dg~I~vwd~~t~~~~~~l~~ 1061 (1094)
.++.|++++..++.....+..+.+|+..++.....+.+...+..+.++++ .+++++ .++.+.+|+....+....+.
T Consensus 119 ~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 197 (301)
T d1l0qa2 119 LGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK- 197 (301)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-
T ss_pred eEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeecccccccccccccceeeeeccc-
Confidence 88999999988776666666999999999999999998888999999998 565555 45788889988888777764
Q ss_pred cCCcceEEEEEcCCCCEEEEEeC---CCcEEEEeCC
Q 001349 1062 GTSGKVQCMALDDNEEFLVIGTS---DGRIQAWGLS 1094 (1094)
Q Consensus 1062 ~h~~~I~~l~~Spdg~~L~sgs~---DG~I~iWdls 1094 (1094)
+...+..++|+++++.++.++. +++|++||+.
T Consensus 198 -~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~ 232 (301)
T d1l0qa2 198 -VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG 232 (301)
T ss_dssp -CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred -ccCCcceeeccccccccccccccceeeeeeeeecC
Confidence 3456788999999998876644 4689999963
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.62 E-value=1.3e-14 Score=159.85 Aligned_cols=257 Identities=12% Similarity=0.029 Sum_probs=176.7
Q ss_pred cccccccCcEE-EEeeCCCCeEEEeCCc--ceeecccCC-----CcEEEEEEeCC--EEEEEE------------CCCeE
Q 001349 778 YSPLAFEMVKV-LSNGHDSSADFWNHRE--LVHVDSSEN-----GKVLSIACFRD--KIFSGH------------SDGTI 835 (1094)
Q Consensus 778 ~~~~~~d~~~l-~s~s~dg~I~vWd~~~--~~~~~~~h~-----~~V~~l~fspd--~LaSgs------------~Dg~I 835 (1094)
...+++||+++ ++++.++.|.+||..+ .......+. ..+..++|+|+ ++++++ .++.+
T Consensus 38 ~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~ 117 (337)
T d1pbyb_ 38 VPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRV 117 (337)
T ss_dssp CEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEE
T ss_pred EEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccce
Confidence 45678899987 5677899999999973 333333332 33457899987 666554 46789
Q ss_pred EEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEee
Q 001349 836 KVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP 915 (1094)
Q Consensus 836 ~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fsp 915 (1094)
.+||..++ .....+. +...+..++|+|||+++++++.| +.+||..+++... ............ +.+
T Consensus 118 ~~~d~~~~--~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~--~~~~~~~~~~~~-------~~~ 183 (337)
T d1pbyb_ 118 ALYDAETL--SRRKAFE-APRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVE--DKPIQSWEAETY-------AQP 183 (337)
T ss_dssp EEEETTTT--EEEEEEE-CCSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEE--EECSTTTTTTTB-------CCC
T ss_pred eeccccCC--eEEEecc-ccCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEE--EeecCCccccce-------ecC
Confidence 99999998 6677765 45668899999999999998755 7889999885332 222222222222 334
Q ss_pred CCCeEEEEEeC-CeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCcc
Q 001349 916 QGAGIKVHLRN-GKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLV 994 (1094)
Q Consensus 916 dg~~l~~~~~~-g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~ 994 (1094)
++..+...... +....+.. ...+.......++.++.+.+||..++.... ..+..+...+..+.+++++.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 253 (337)
T d1pbyb_ 184 DVLAVWNQHESSGVMATPFY-----TARKDIDPADPTAYRTGLLTMDLETGEMAM-----REVRIMDVFYFSTAVNPAKT 253 (337)
T ss_dssp BCCCCCCCCTTTTEEEEEEE-----EEBTTSCTTSGGGEEEEEEEEETTTCCEEE-----EEEEECSSCEEEEEECTTSS
T ss_pred Ccceeeccccccceeeeeee-----eeeeccceeeecccCccEEEEEcCCCcEEE-----EEecCCCcceEEEEecccce
Confidence 43322111111 11100000 000001112334456679999999988653 23445677888899999999
Q ss_pred EEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecc
Q 001349 995 YTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQT 1061 (1094)
Q Consensus 995 ~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~ 1061 (1094)
++++.. +.|++||+.+++.+..+.+...+.+++|+|| ++++++.+|+|+|||..+++.+.+++.
T Consensus 254 ~~~~~~---~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 254 RAFGAY---NVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp EEEEEE---SEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred EEEEcc---ccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence 887763 4899999999999999998888999999998 899999999999999999999988853
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.62 E-value=9.8e-15 Score=162.96 Aligned_cols=291 Identities=13% Similarity=0.078 Sum_probs=189.5
Q ss_pred cccccccCcEEEEe-----eCCCCeEEEeCCcc--eeecccCCCcEEEEEEeCC--EEEE----------EECCCeEEEE
Q 001349 778 YSPLAFEMVKVLSN-----GHDSSADFWNHREL--VHVDSSENGKVLSIACFRD--KIFS----------GHSDGTIKVW 838 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~-----s~dg~I~vWd~~~~--~~~~~~h~~~V~~l~fspd--~LaS----------gs~Dg~I~vW 838 (1094)
....++|+.+++.. ..++.|.+||..+. +.....+ .+..++|+|| +|++ ++.||.|++|
T Consensus 6 ~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g--~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~ 83 (355)
T d2bbkh_ 6 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVF 83 (355)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC--SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred eEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECC--CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEE
Confidence 34567899987664 34567999998743 3333333 4447999997 4443 3458999999
Q ss_pred ecCCCcceeEEEecccCC-------CeEEEEEecCCCEEEEEe--CCCcEEEEECCCCceEEEEecccCccceee-eecC
Q 001349 839 TGRGSILHLIQQIREHTK-------AVTGLAILQSGEMLYSGS--LDKTARVWSIGNEEIHCVQVHDIKDQIQNL-AVSN 908 (1094)
Q Consensus 839 d~~t~~~~~~~~l~~H~~-------~V~sv~fspdg~~LaSgs--~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v-~~~~ 908 (1094)
|..++ +.+..+..+.. ....++|+|+|++++.++ .+..+.+|+..+++.... .......... ....
T Consensus 84 D~~t~--~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 159 (355)
T d2bbkh_ 84 DPVTL--LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRM--LDVPDCYHIFPTAPD 159 (355)
T ss_dssp CTTTC--CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEE--EECCSEEEEEEEETT
T ss_pred ECCCC--CEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeE--EecCCcceEeecCCc
Confidence 99998 56666543332 235689999999888775 467899999999853222 1111111111 1122
Q ss_pred ceEEEeeCCCeEEEEEeC-CeEEEEcCC-------CCceEEEEe--CCEEEEEEcCCeEEEEECCCCceeEEecc--cee
Q 001349 909 SILCFIPQGAGIKVHLRN-GKTKLLNSS-------KYPKCLALV--QGKVYCGCQDGAIQEIDLATGTFATIQTG--HRK 976 (1094)
Q Consensus 909 ~~~~fspdg~~l~~~~~~-g~i~l~~~~-------~~v~~l~~s--~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~--~~~ 976 (1094)
..+.+++||+.+.+...+ +.+..++.. ..+....+. ++.++.++.++.+++|++..+........ ...
T Consensus 160 ~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 239 (355)
T d2bbkh_ 160 TFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTE 239 (355)
T ss_dssp EEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCH
T ss_pred ceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCccc
Confidence 235588898887766554 334444321 123333443 46788999999999999998765422110 000
Q ss_pred ----ecCCCCCeEEEEEeCCccEEEEEECCC---------CEEEEEECCCCeEEEEecCCCCEEEEEEeCC----EEEEE
Q 001349 977 ----LLGKANPVHALQVHNGLVYTASTSLDG---------AAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE----LVYLG 1039 (1094)
Q Consensus 977 ----~~~h~~~V~sl~fs~~~~~las~s~Dg---------~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd----~l~sg 1039 (1094)
..........+++++++..++....++ ..|.+||..+++.+..+.++..+.+++|+|| +++++
T Consensus 240 ~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~ 319 (355)
T d2bbkh_ 240 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALS 319 (355)
T ss_dssp HHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEE
T ss_pred ceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEE
Confidence 000112234578888887766654432 3799999999999999887778899999998 34566
Q ss_pred EcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCC
Q 001349 1040 CKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDN 1075 (1094)
Q Consensus 1040 s~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spd 1075 (1094)
+.|+.|+|||..+++.+.++. ++......+.+.++
T Consensus 320 ~~d~~i~v~D~~tg~~~~~i~-~~G~~p~~i~~~d~ 354 (355)
T d2bbkh_ 320 TGDKTLYIHDAESGEELRSVN-QLGHGPQVITTADM 354 (355)
T ss_dssp TTTTEEEEEETTTCCEEEEEC-CCCSSCCEEECCCC
T ss_pred CCCCEEEEEECCCCCEEEEEe-CcCCCccEEEeCCC
Confidence 779999999999999999994 55444555555443
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.59 E-value=8e-14 Score=155.40 Aligned_cols=267 Identities=10% Similarity=0.081 Sum_probs=174.1
Q ss_pred EEeCC--EEEEE-----ECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEE----------eCCCcEEEE
Q 001349 820 ACFRD--KIFSG-----HSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSG----------SLDKTARVW 882 (1094)
Q Consensus 820 ~fspd--~LaSg-----s~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSg----------s~DgtI~vW 882 (1094)
+.+|| .++.. ..+++|.+||..++ +.+.++..+... .++|||||++|+++ +.|+.|++|
T Consensus 8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg--~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~ 83 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAG--RVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVF 83 (355)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTT--EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred eeCCCCCEEEEEecccCCCcCeEEEEECCCC--cEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEE
Confidence 34565 44443 34668999999999 778888765444 79999999988764 347899999
Q ss_pred ECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeC--CeEEEEcCCCC--ceEE---------EEeCCEEE
Q 001349 883 SIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRN--GKTKLLNSSKY--PKCL---------ALVQGKVY 949 (1094)
Q Consensus 883 di~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~--g~i~l~~~~~~--v~~l---------~~s~~~l~ 949 (1094)
|..+++....... .......+...+..+.|+|+|+.+.+.... ..+.+|+.... +..+ ...+...+
T Consensus 84 D~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (355)
T d2bbkh_ 84 DPVTLLPTADIEL-PDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFF 162 (355)
T ss_dssp CTTTCCEEEEEEE-TTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEE
T ss_pred ECCCCCEEEEEec-CCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceE
Confidence 9999874332221 122222222334456699999998887654 45667765332 1111 11234466
Q ss_pred EEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEE--ec-C----
Q 001349 950 CGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGS--LP-T---- 1022 (1094)
Q Consensus 950 sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~--~~-~---- 1022 (1094)
..+.||...++...................+...+....+.+++..++..+.++ .+.+|+...+..... .. +
T Consensus 163 ~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~ 241 (355)
T d2bbkh_ 163 MHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTG-KIHQIDLSSGDAKFLPAVEALTEAE 241 (355)
T ss_dssp EEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTS-EEEEEECTTSSCEECCCEESSCHHH
T ss_pred EEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCC-eEEEEecCCCcEEEEeccCCcccce
Confidence 677888877777655544332222122233444556667777777777777775 999999987654221 11 0
Q ss_pred ------CCCEEEEEEeCC--EEEEEEcC----------CeEEEEECCCCcEEEEecccCCcceEEEEEcCCCC--EEEEE
Q 001349 1023 ------LSEVRAMVVSSE--LVYLGCKG----------GTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE--FLVIG 1082 (1094)
Q Consensus 1023 ------~~~v~~l~~spd--~l~sgs~d----------g~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~--~L~sg 1082 (1094)
......++++++ .++..+.+ +.|.+||..+++.+..+. +...+.+++|+|||+ +++++
T Consensus 242 ~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~--~~~~~~~~a~spDG~~~l~v~~ 319 (355)
T d2bbkh_ 242 RADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE--MGHEIDSINVSQDEKPLLYALS 319 (355)
T ss_dssp HHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE--EEEEECEEEECCSSSCEEEEEE
T ss_pred EeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec--CCCCEEEEEEcCCCCeEEEEEE
Confidence 122345778877 45444332 479999999999998885 345689999999997 45677
Q ss_pred eCCCcEEEEeCC
Q 001349 1083 TSDGRIQAWGLS 1094 (1094)
Q Consensus 1083 s~DG~I~iWdls 1094 (1094)
+.|++|++||+.
T Consensus 320 ~~d~~i~v~D~~ 331 (355)
T d2bbkh_ 320 TGDKTLYIHDAE 331 (355)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCEEEEEECC
Confidence 789999999973
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.57 E-value=2.1e-12 Score=144.91 Aligned_cols=283 Identities=8% Similarity=-0.052 Sum_probs=186.7
Q ss_pred ccccccccccCcEEEEe-----eCCCCeEEEeCCc--ceeecccCCCcEEEEEEeCC--EEEEEE----------CCCeE
Q 001349 775 LRKYSPLAFEMVKVLSN-----GHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGH----------SDGTI 835 (1094)
Q Consensus 775 ~~~~~~~~~d~~~l~s~-----s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~fspd--~LaSgs----------~Dg~I 835 (1094)
......+++|+++++.. +..+.|.+||..+ ....+..+.. ..++|+|| +|++++ .++.|
T Consensus 22 p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~--~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v 99 (373)
T d2madh_ 22 PTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL--PNPVAAHSGSEFALASTSFSRIAKGKRTDYV 99 (373)
T ss_pred CccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCC--ccEEEcCCCCEEEEEeecCCcccccccceEE
Confidence 34556788999988664 2335688888763 3344444443 37999998 666654 46889
Q ss_pred EEEecCCCcceeEEEecccCCCe-------EEEEEecCCCEEEEEe--CCCcEEEEECCCCceEEEEecccCccceeeee
Q 001349 836 KVWTGRGSILHLIQQIREHTKAV-------TGLAILQSGEMLYSGS--LDKTARVWSIGNEEIHCVQVHDIKDQIQNLAV 906 (1094)
Q Consensus 836 ~vWd~~t~~~~~~~~l~~H~~~V-------~sv~fspdg~~LaSgs--~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~ 906 (1094)
.+||..++ +.+..+..|.... ..+.|+++++.++... .++.+.+|+..+.+.. ... .....+
T Consensus 100 ~v~D~~t~--~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~-- 170 (373)
T d2madh_ 100 EVFDPVTF--LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDD--QLL---SSPTCY-- 170 (373)
T ss_pred EEEECCCC--cEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEE--EEe---ccceeE--
Confidence 99999999 6777776665543 4578889888766554 4567889998876421 111 112233
Q ss_pred cCceEEEeeCCCeE-EEEEeCCeEEEEcCCCC------------------ceEEEEeC-CEEEEEEcCCeEEEEECCCCc
Q 001349 907 SNSILCFIPQGAGI-KVHLRNGKTKLLNSSKY------------------PKCLALVQ-GKVYCGCQDGAIQEIDLATGT 966 (1094)
Q Consensus 907 ~~~~~~fspdg~~l-~~~~~~g~i~l~~~~~~------------------v~~l~~s~-~~l~sgs~Dg~I~iwDl~~~~ 966 (1094)
.|+|+|+.+ +....++.+.+|+.... .....+.+ +.++..+.++.+.+|+..++.
T Consensus 171 -----~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 245 (373)
T d2madh_ 171 -----HIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAG 245 (373)
T ss_pred -----EEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCe
Confidence 388888765 45566788887774221 12223333 456777889999999988876
Q ss_pred eeEEeccce------eecCCCCCeEEEEEeCCccEEE----------EEECCCCEEEEEECCCCeEEEEecCCCCEEEEE
Q 001349 967 FATIQTGHR------KLLGKANPVHALQVHNGLVYTA----------STSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMV 1030 (1094)
Q Consensus 967 ~~~~~~~~~------~~~~h~~~V~sl~fs~~~~~la----------s~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~ 1030 (1094)
......... ...........+.+++++..++ ....+ +.+.+||..+++.+..+.+...+..++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~v~~~d~~t~~~~~~~~~~~~~~~~a 324 (373)
T d2madh_ 246 ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAA-KEVTSVTGLVGQTSSQISLGHDVDAIS 324 (373)
T ss_pred EEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCC-CeEEEEECCCCcEEEEecCCCCeeEEE
Confidence 543211100 0000112233344555444333 33333 489999999999999999889999999
Q ss_pred EeCC----EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCC
Q 001349 1031 VSSE----LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDN 1075 (1094)
Q Consensus 1031 ~spd----~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spd 1075 (1094)
|+|| ++++++.|++|+|||+.+++.+.++. ++....+.+++.++
T Consensus 325 ~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~-~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 325 VAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTV-ELGSGPQVLSVMNE 372 (373)
T ss_pred ECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEC-CCCCCCcEEEEecC
Confidence 9998 34678899999999999999999994 66666777776543
|
| >d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.52 E-value=2.1e-15 Score=130.02 Aligned_cols=63 Identities=25% Similarity=0.378 Sum_probs=54.8
Q ss_pred CceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHH
Q 001349 162 KDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLI 224 (1094)
Q Consensus 162 ~~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i 224 (1094)
+++.||||+++|.|||+++|||+||+.||++|++.+...||.||.++...++..|...+.+++
T Consensus 22 ~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~P~~~~l~~l 84 (86)
T d1rmda2 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNIL 84 (86)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHH
T ss_pred cCcCCccCCcchhcceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhccCHHHHHHHHh
Confidence 367999999999999999999999999999999876778999999998777755676666654
|
| >d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: brca1 RING domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=3.1e-15 Score=135.82 Aligned_cols=66 Identities=15% Similarity=0.448 Sum_probs=59.2
Q ss_pred ceeccCccccccCcEEcCCcccccHHhHHHHHHhCC--CCCCCCCcCCCCCCCCChhHHHHHHHHHHHH
Q 001349 163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGN--SSCPITRQKLSSTKLPKTNYVLKRLIASWQE 229 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~--~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~ 229 (1094)
.+.||||+++|.+||+++|||+||+.||.+|+.... ..||.||+.+....+. +|..++++++++++
T Consensus 21 ~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~-~n~~l~~~ve~l~~ 88 (103)
T d1jm7a_ 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ-ESTRFSQLVEELLK 88 (103)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCB-CCCSSSHHHHHHHH
T ss_pred CcCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCC-cCHHHHHHHHHHHH
Confidence 789999999999999999999999999999997633 4699999999988886 99999898888764
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=3.6e-12 Score=139.97 Aligned_cols=229 Identities=14% Similarity=0.214 Sum_probs=155.2
Q ss_pred EEEEEECCCeEEEEecCCCc-ceeEEEecccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCc--eEEEEecccCcc
Q 001349 825 KIFSGHSDGTIKVWTGRGSI-LHLIQQIREHTKAVTGLAILQSGEMLYSGS-LDKTARVWSIGNEE--IHCVQVHDIKDQ 900 (1094)
Q Consensus 825 ~LaSgs~Dg~I~vWd~~t~~-~~~~~~l~~H~~~V~sv~fspdg~~LaSgs-~DgtI~vWdi~~~~--~~~~~~~~~~~~ 900 (1094)
.+++++.|++|++||+.+.. ...++. ..|.+.|..++|+|||++|++++ .|++|++|++..+. ............
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~-~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~ 84 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS 84 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEE-EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence 46788899999999997542 233333 36889999999999999986555 58999999998654 222222223333
Q ss_pred ceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEE-cCCeEEEEECCCCceeEEeccceeecC
Q 001349 901 IQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGC-QDGAIQEIDLATGTFATIQTGHRKLLG 979 (1094)
Q Consensus 901 V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs-~Dg~I~iwDl~~~~~~~~~~~~~~~~~ 979 (1094)
+..++ |+|||+++ ++++ .++.|.+|+......... .....
T Consensus 85 p~~l~-------~spDg~~l----------------------------~v~~~~~~~v~~~~~~~~~~~~~----~~~~~ 125 (333)
T d1ri6a_ 85 LTHIS-------TDHQGQFV----------------------------FVGSYNAGNVSVTRLEDGLPVGV----VDVVE 125 (333)
T ss_dssp CSEEE-------ECTTSSEE----------------------------EEEETTTTEEEEEEEETTEEEEE----EEEEC
T ss_pred ceEEE-------EcCCCCEE----------------------------eecccCCCceeeeccccccceec----ccccC
Confidence 44444 89999864 3443 466788888776654432 22344
Q ss_pred CCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEE-------EecCCCCEEEEEEeCC--EEE-EEEcCCeEEEEE
Q 001349 980 KANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVG-------SLPTLSEVRAMVVSSE--LVY-LGCKGGTVEIWD 1049 (1094)
Q Consensus 980 h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~-------~~~~~~~v~~l~~spd--~l~-sgs~dg~I~vwd 1049 (1094)
+...++++.+++++.+++.++.++..+.+|+........ ..........++|+++ +++ +....+...+|+
T Consensus 126 ~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~ 205 (333)
T d1ri6a_ 126 GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWE 205 (333)
T ss_dssp CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEe
Confidence 566788999999999998888777799999987643222 1124566789999988 444 445667888888
Q ss_pred CCCCc----EEEEec---c--cCCcceEEEEEcCCCCEEEEE-eCCCcEEEEeC
Q 001349 1050 QKRQI----RIETLQ---T--GTSGKVQCMALDDNEEFLVIG-TSDGRIQAWGL 1093 (1094)
Q Consensus 1050 ~~t~~----~~~~l~---~--~h~~~I~~l~~Spdg~~L~sg-s~DG~I~iWdl 1093 (1094)
..... ....+. . ........+++++|+++++.+ ..++++.+|++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~ 259 (333)
T d1ri6a_ 206 LKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSV 259 (333)
T ss_dssp SSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEE
Confidence 65432 222221 1 123356788999999877655 45678999875
|
| >d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: bard1 RING domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=1.1e-14 Score=130.57 Aligned_cols=66 Identities=21% Similarity=0.346 Sum_probs=58.9
Q ss_pred CCceeccCccccccCcEEc-CCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCCChhHHHHHHHHHHHHh
Q 001349 161 PKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQ 230 (1094)
Q Consensus 161 ~~~~~CpIc~~~~~dPv~~-~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~~pN~~l~~~i~~~~~~ 230 (1094)
++++.||||+++|.+||++ +|||+||+.||.+|+.. .||.||..+...++. +|..|+++|+.++..
T Consensus 20 ~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~---~CP~Cr~~~~~~~l~-~n~~l~~lv~~~~~~ 86 (97)
T d1jm7b_ 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGT---GCPVCYTPAWIQDLK-INRQLDSMIQLCSKL 86 (97)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTT---BCSSSCCBCSCSSCC-CCHHHHHHHHHHHHH
T ss_pred hhcCCCccCCchhhcCceeCCCCCchhHHHHHHHHhc---cccccCCcCchhhCc-ccHHHHHHHHHHHHH
Confidence 4478999999999999985 89999999999999843 599999999988897 999999999988653
|
| >d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Pre-mRNA splicing factor Prp19 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.42 E-value=1.9e-14 Score=114.24 Aligned_cols=50 Identities=20% Similarity=0.484 Sum_probs=45.7
Q ss_pred eeccCccccccCcEEc-CCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCCC
Q 001349 164 FVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLP 214 (1094)
Q Consensus 164 ~~CpIc~~~~~dPv~~-~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~~ 214 (1094)
+.||||+++|+|||++ .|||+||+.||.+|+.. +..||.||+++...+++
T Consensus 1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~-~~~CP~c~~~l~~~dLi 51 (56)
T d2baya1 1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIV 51 (56)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCE
T ss_pred CCCccCCchHHhcCccCCCCCcccHHHHHHHHhh-ccCCCccCCcCCHHhce
Confidence 5799999999999987 69999999999999998 55799999999988875
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.35 E-value=1.9e-11 Score=137.45 Aligned_cols=255 Identities=8% Similarity=-0.077 Sum_probs=166.2
Q ss_pred ECCCe--EEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEe----------CCCcEEEEECCCCceEEEEeccc
Q 001349 830 HSDGT--IKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGS----------LDKTARVWSIGNEEIHCVQVHDI 897 (1094)
Q Consensus 830 s~Dg~--I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs----------~DgtI~vWdi~~~~~~~~~~~~~ 897 (1094)
..+|+ |.+||..++ +.+.++..+... .++|+|||+.|++.+ .|++|++||..+++........
T Consensus 41 ~~~g~~~~~~~d~~~~--~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p- 115 (368)
T d1mdah_ 41 YFAGTTENWVSCAGCG--VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELP- 115 (368)
T ss_dssp TTCSSEEEEEEETTTT--EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEET-
T ss_pred cCCCcceEEEEeCCCC--cEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCC-
Confidence 44444 666798888 777777776654 589999999888764 4788999999998633222211
Q ss_pred CccceeeeecCceEEEeeCCCeEEEEEe-CCeEEEEcCCCC--ceEE---------EEeCCEEEEEEcCCeEEEEECCCC
Q 001349 898 KDQIQNLAVSNSILCFIPQGAGIKVHLR-NGKTKLLNSSKY--PKCL---------ALVQGKVYCGCQDGAIQEIDLATG 965 (1094)
Q Consensus 898 ~~~V~~v~~~~~~~~fspdg~~l~~~~~-~g~i~l~~~~~~--v~~l---------~~s~~~l~sgs~Dg~I~iwDl~~~ 965 (1094)
.......-..+..++|+|||+++++... ++.+.+|+.... +..+ ...+..++..+.||.+.+|+...+
T Consensus 116 ~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~ 195 (368)
T d1mdah_ 116 DAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAA 195 (368)
T ss_dssp TSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSS
T ss_pred ccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCC
Confidence 1111111223345669999999988875 588989985332 1111 112345777889999999998876
Q ss_pred ceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec--C-----------CCCEEEEEEe
Q 001349 966 TFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP--T-----------LSEVRAMVVS 1032 (1094)
Q Consensus 966 ~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~--~-----------~~~v~~l~~s 1032 (1094)
..............+...+....+.+++..+.+. ++.+.+++...+....... . ......++++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 272 (368)
T d1mdah_ 196 PAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV---ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL 272 (368)
T ss_dssp CCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB---SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred ceeeeeeecccccccccceeecccccCcEEEEec---CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEc
Confidence 5543333333344555566677788888776654 2367777776554433221 0 1122346777
Q ss_pred CC--EEEEEEcC---------CeEEEEECCCCcEEEEecccCCcceEEEEEcCCCC-E-EEEEeCCCcEEEEeCC
Q 001349 1033 SE--LVYLGCKG---------GTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE-F-LVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1033 pd--~l~sgs~d---------g~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~-~-L~sgs~DG~I~iWdls 1094 (1094)
++ .++....+ +.|.+||..+++.+..+. +...+.+++|+|||+ + ++++..|++|++||..
T Consensus 273 ~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~--~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~ 345 (368)
T d1mdah_ 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS--NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE--EEEEECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred CCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec--CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECC
Confidence 76 44443221 369999999999988885 445789999999997 3 4567789999999963
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.31 E-value=1.8e-11 Score=137.74 Aligned_cols=277 Identities=6% Similarity=-0.085 Sum_probs=168.7
Q ss_pred ccccCcE--E-EEeeCCCCeEEE--eCC--cceeecccCCCcEEEEEEeCC--EEEEE----------ECCCeEEEEecC
Q 001349 781 LAFEMVK--V-LSNGHDSSADFW--NHR--ELVHVDSSENGKVLSIACFRD--KIFSG----------HSDGTIKVWTGR 841 (1094)
Q Consensus 781 ~~~d~~~--l-~s~s~dg~I~vW--d~~--~~~~~~~~h~~~V~~l~fspd--~LaSg----------s~Dg~I~vWd~~ 841 (1094)
..+++.. + ++...+++..+| |.. +......++... .++|+|| .|++. +.|++|++||..
T Consensus 27 ~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~ 104 (368)
T d1mdah_ 27 PGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV 104 (368)
T ss_dssp CCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT
T ss_pred cCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECC
Confidence 3445653 3 334556665555 655 334444455544 5889997 55543 347889999999
Q ss_pred CCcceeEEEecccCC-------CeEEEEEecCCCEEEEEe-CCCcEEEEECCCCceEEEEecccCccceeeeecCceEEE
Q 001349 842 GSILHLIQQIREHTK-------AVTGLAILQSGEMLYSGS-LDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCF 913 (1094)
Q Consensus 842 t~~~~~~~~l~~H~~-------~V~sv~fspdg~~LaSgs-~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~f 913 (1094)
++ +.+..+..|.. ....++|+|||++++++. .++++.+||+.+++.......... ....-.-....+.+
T Consensus 105 t~--~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~ 181 (368)
T d1mdah_ 105 TF--LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASC-FHIHPGAAATHYLG 181 (368)
T ss_dssp TC--CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSC-CCCEEEETTEEECC
T ss_pred CC--cEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCc-ceEccCCCceEEEE
Confidence 98 66666654332 234689999999998776 579999999999863322221111 11111111123346
Q ss_pred eeCCCeEEEEEeCCeEEEEc--------CCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceee------cC
Q 001349 914 IPQGAGIKVHLRNGKTKLLN--------SSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKL------LG 979 (1094)
Q Consensus 914 spdg~~l~~~~~~g~i~l~~--------~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~------~~ 979 (1094)
++||+.+.+...++....+. ....+....+.....+....++.+.+++...+............ ..
T Consensus 182 ~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (368)
T d1mdah_ 182 SCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNF 261 (368)
T ss_dssp CCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTE
T ss_pred cCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeee
Confidence 77888776665554333221 12233445555444444556677888887766544321110000 00
Q ss_pred CCCCeEEEEEeCCccEEEEEECCC--------CEEEEEECCCCeEEEEecCCCCEEEEEEeCC---E-EEEEEcCCeEEE
Q 001349 980 KANPVHALQVHNGLVYTASTSLDG--------AAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE---L-VYLGCKGGTVEI 1047 (1094)
Q Consensus 980 h~~~V~sl~fs~~~~~las~s~Dg--------~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd---~-l~sgs~dg~I~v 1047 (1094)
.......+++++++..+.....++ ..|.+||..+++.+..+.+...+.+++|+|| + ++++..++.|+|
T Consensus 262 ~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v 341 (368)
T d1mdah_ 262 RSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDI 341 (368)
T ss_dssp EECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEE
T ss_pred cCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEE
Confidence 011223467777665544332221 3699999999999998887778999999998 3 455667899999
Q ss_pred EECCCCcEEEEeccc
Q 001349 1048 WDQKRQIRIETLQTG 1062 (1094)
Q Consensus 1048 wd~~t~~~~~~l~~~ 1062 (1094)
||..+++.+.++..+
T Consensus 342 ~D~~tgk~~~~i~~g 356 (368)
T d1mdah_ 342 YDAASDQDQSSVELD 356 (368)
T ss_dssp EESSSCEEEEECCCC
T ss_pred EECCCCCEEEEEECC
Confidence 999999999999643
|
| >d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: CBL species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=1.1e-12 Score=111.82 Aligned_cols=51 Identities=20% Similarity=0.330 Sum_probs=45.9
Q ss_pred ceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCC
Q 001349 163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKL 213 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~ 213 (1094)
...||||++.+.+||+++|||+||+.||.+|+..+...||.||+.+.....
T Consensus 23 ~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~~ 73 (79)
T d1fbva4 23 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 73 (79)
T ss_dssp TTBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCCC
T ss_pred CCCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCce
Confidence 457999999999999999999999999999998766789999999986554
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.26 E-value=2.9e-10 Score=132.14 Aligned_cols=140 Identities=11% Similarity=-0.054 Sum_probs=97.8
Q ss_pred ccccCcEEEEeeCCCCeEEEeCCcce--e-----ecccCCCcEEEEEEeCC--EEEEEE---------CCCeEEEEecCC
Q 001349 781 LAFEMVKVLSNGHDSSADFWNHRELV--H-----VDSSENGKVLSIACFRD--KIFSGH---------SDGTIKVWTGRG 842 (1094)
Q Consensus 781 ~~~d~~~l~s~s~dg~I~vWd~~~~~--~-----~~~~h~~~V~~l~fspd--~LaSgs---------~Dg~I~vWd~~t 842 (1094)
+..++.++.. .++.|.+||..+.. . .+..|...|.++.|||| +|+.++ .+|.+.+||+.+
T Consensus 24 W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~ 101 (470)
T d2bgra1 24 WISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK 101 (470)
T ss_dssp ECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred eCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCC
Confidence 3456666654 47889999987332 1 33456688999999998 677664 367899999999
Q ss_pred CcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceee----------eecCceEE
Q 001349 843 SILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNL----------AVSNSILC 912 (1094)
Q Consensus 843 ~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v----------~~~~~~~~ 912 (1094)
+ .+..+..|.+.+..+.|||||+.+|... |+.+.+|+..+++...+........+... .-....+.
T Consensus 102 ~---~~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~ 177 (470)
T d2bgra1 102 R---QLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALW 177 (470)
T ss_dssp T---EECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred C---cccccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccE
Confidence 8 3566788999999999999999999865 57899999998864333222211111110 01122355
Q ss_pred EeeCCCeEEEEEeC
Q 001349 913 FIPQGAGIKVHLRN 926 (1094)
Q Consensus 913 fspdg~~l~~~~~~ 926 (1094)
|+|||+.++....+
T Consensus 178 wSPDGk~ia~~~~d 191 (470)
T d2bgra1 178 WSPNGTFLAYAQFN 191 (470)
T ss_dssp ECTTSSEEEEEEEE
T ss_pred ECCCCCccceeEec
Confidence 99999999987665
|
| >d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Acute promyelocytic leukaemia proto-oncoprotein PML species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=3e-12 Score=100.66 Aligned_cols=47 Identities=15% Similarity=0.108 Sum_probs=41.3
Q ss_pred ceeccCccccccCcEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCC
Q 001349 163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKL 213 (1094)
Q Consensus 163 ~~~CpIc~~~~~dPv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~ 213 (1094)
.+.||||++.|.||++++|||+||+.||++| ...||.||+.++....
T Consensus 6 ~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~~ 52 (56)
T d1bora_ 6 FLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGAD 52 (56)
T ss_dssp CSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCSS
T ss_pred CCCCcccCcccCCCEEecCCCHHhHHHHHcC----CCcCcCCCCcccCCCC
Confidence 5799999999999999999999999999754 4579999999876544
|
| >d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: TFIIH Mat1 subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=9.7e-12 Score=101.65 Aligned_cols=52 Identities=21% Similarity=0.351 Sum_probs=43.4
Q ss_pred CceeccCccccccC-c----EEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCCCCC
Q 001349 162 KDFVCPITTHIFDD-P----VTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKL 213 (1094)
Q Consensus 162 ~~~~CpIc~~~~~d-P----v~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~~~~ 213 (1094)
++..||||++.+.. | ++++|||+||..||.+|+..+...||.||+.+....+
T Consensus 2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~~ 58 (65)
T d1g25a_ 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcccccc
Confidence 37889999987532 2 5679999999999999998777789999999877654
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.10 E-value=1.2e-09 Score=123.46 Aligned_cols=279 Identities=9% Similarity=-0.002 Sum_probs=170.1
Q ss_pred EEEEeeCCCCeEEEeCCcce--ee------------------------------cccCCCcEEEEEEeCC--EE-EEEEC
Q 001349 787 KVLSNGHDSSADFWNHRELV--HV------------------------------DSSENGKVLSIACFRD--KI-FSGHS 831 (1094)
Q Consensus 787 ~l~s~s~dg~I~vWd~~~~~--~~------------------------------~~~h~~~V~~l~fspd--~L-aSgs~ 831 (1094)
.+++++.+|.|++|++.... .. ...|........++|| ++ ++...
T Consensus 13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~ 92 (441)
T d1qnia2 13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKA 92 (441)
T ss_dssp EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCC
Confidence 36788899999999976211 11 0113344555555666 45 55568
Q ss_pred CCeEEEEecCCCcceeEEEec-ccCCCeEEEEEecCCC--EEEEEeCCC-----------------cEEEEECCCCceEE
Q 001349 832 DGTIKVWTGRGSILHLIQQIR-EHTKAVTGLAILQSGE--MLYSGSLDK-----------------TARVWSIGNEEIHC 891 (1094)
Q Consensus 832 Dg~I~vWd~~t~~~~~~~~l~-~H~~~V~sv~fspdg~--~LaSgs~Dg-----------------tI~vWdi~~~~~~~ 891 (1094)
++.|.+||+.++ +....+. .+...+..++|+|||+ +++..+.+. .+..+|..+.+..
T Consensus 93 ~~rVavIDl~t~--k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~- 169 (441)
T d1qnia2 93 NTRVARIRLDIM--KTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVA- 169 (441)
T ss_dssp TTEEEEEETTTT--EEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEE-
T ss_pred CCEEEEEECCCC--cEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceee-
Confidence 899999999998 4555443 4677899999999998 555444432 1244666665321
Q ss_pred EEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeE-EEEc--CCCCceEEEEe----------CCEEEEEEcCCeEE
Q 001349 892 VQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKT-KLLN--SSKYPKCLALV----------QGKVYCGCQDGAIQ 958 (1094)
Q Consensus 892 ~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i-~l~~--~~~~v~~l~~s----------~~~l~sgs~Dg~I~ 958 (1094)
.......... .+.|+|+|+++.+.+.+... ..++ ......-+.+. +|+....+.++.+.
T Consensus 170 -~qI~v~~~p~-------~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~v 241 (441)
T d1qnia2 170 -WQVIVDGNLD-------NTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPV 241 (441)
T ss_dssp -EEEEESSCCC-------CEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCE
T ss_pred -EEEecCCCcc-------ceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEE
Confidence 1111122333 34499999999888776421 1111 11111122211 34444445577777
Q ss_pred EEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeE------------EEEecCCCCE
Q 001349 959 EIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNM------------VGSLPTLSEV 1026 (1094)
Q Consensus 959 iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~------------~~~~~~~~~v 1026 (1094)
+++.......... ... .....+.++||+.+++.++..+.+|.+||+.+... .......-..
T Consensus 242 vd~~~~~~v~~~I------Pvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgp 314 (441)
T d1qnia2 242 VDGRGESEFTRYI------PVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGP 314 (441)
T ss_dssp EECSSSCSSEEEE------CCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCE
T ss_pred EEcccCCceEEEE------eCC-CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCc
Confidence 7776665554322 222 23567999999998876655556999999864221 1111123334
Q ss_pred EEEEEeCC--EEEEEEcCCeEEEEECCC----------CcEEEEe----cccCCcceEEEEEcCCCCEEEEEe
Q 001349 1027 RAMVVSSE--LVYLGCKGGTVEIWDQKR----------QIRIETL----QTGTSGKVQCMALDDNEEFLVIGT 1083 (1094)
Q Consensus 1027 ~~l~~spd--~l~sgs~dg~I~vwd~~t----------~~~~~~l----~~~h~~~I~~l~~Spdg~~L~sgs 1083 (1094)
...+|+++ .+.+.+.|..|..|++.. ...+..+ +.||...+.+..++|||++|++++
T Consensus 315 lh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~ 387 (441)
T d1qnia2 315 LHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS 387 (441)
T ss_dssp EEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred ccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence 55688887 344556899999999741 1233333 257887888889999999999994
|
| >d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Immediate early protein, IEEHV species: Equine herpesvirus 1 [TaxId: 10326]
Probab=99.04 E-value=4.7e-11 Score=98.61 Aligned_cols=44 Identities=23% Similarity=0.482 Sum_probs=39.4
Q ss_pred eccCccccccCcEE-cCCcccccHHhHHHHHHhCCCCCCCCCcCCC
Q 001349 165 VCPITTHIFDDPVT-LETGQTYERRAIQEWIERGNSSCPITRQKLS 209 (1094)
Q Consensus 165 ~CpIc~~~~~dPv~-~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~ 209 (1094)
.||||++.|.+|++ ++|||+||..||.+|++. +..||.||+.+.
T Consensus 7 ~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~i~ 51 (68)
T d1chca_ 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVE 51 (68)
T ss_dssp CCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCC
T ss_pred CCccCCcCccCCcEEeCCCCcCcHHHHHHHHHh-CCcCCCCCcchH
Confidence 49999999998865 799999999999999998 568999998765
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=1.6e-09 Score=127.86 Aligned_cols=303 Identities=14% Similarity=0.148 Sum_probs=217.8
Q ss_pred cccchHhHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCc
Q 001349 279 SEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESD 358 (1094)
Q Consensus 279 s~~l~~~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~ 358 (1094)
++....++.|+..+..+++.......+. ..+.++..++.+|-.+.+.++++.+..+|.++ +.++..+..|.+ .+.
T Consensus 28 ~~~~~v~~~A~~~l~~l~~~~~~~~~~~---~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l-~~~~~~~~~i~~-~g~ 102 (529)
T d1jdha_ 28 DEDQVVVNKAAVMVHQLSKKEASRHAIM---RSPQMVSAIVRTMQNTNDVETARCTAGTLHNL-SHHREGLLAIFK-SGG 102 (529)
T ss_dssp CSCHHHHHHHHHHHHHHHTSHHHHHHHH---TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-TTSHHHHHHHHH-TTH
T ss_pred CCCHHHHHHHHHHHHHHHhccHHHHHHH---HhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHH-hCCchhHHHHHH-CCC
Confidence 4444557888888887775433323322 34567777888887788899999999999999 466667777775 468
Q ss_pred HHHHHHHHhcC----hHHHHHHHHhcCCChH----HHHHhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCc
Q 001349 359 VERIVALFKKG----LLEAVVLIDLLRPSTR----TLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSE 430 (1094)
Q Consensus 359 ~~~L~~lLk~g----~~~Aa~~l~~L~~~~~----~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~ 430 (1094)
++.|+.+|+.+ ...|+.+|.+|....+ .+..-+.+|+|+.+|.+++... +..+...|..|..
T Consensus 103 i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~-------~~~a~~~L~~l~~--- 172 (529)
T d1jdha_ 103 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF-------LAITTDCLQILAY--- 172 (529)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHH-------HHHHHHHHHHHHT---
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHH-------HHHHHHHHHHHhh---
Confidence 99999999987 6688889988843222 2334456699999997754221 3344444555522
Q ss_pred ccccccchhhhccchhHHHHHHhhhcccHHH-HHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHH
Q 001349 431 ESIVSSIANTIVSSKVFESVISSLEAEWAEE-RIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVC 509 (1094)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 509 (1094)
.+.+++..+...|+++.|+..++..+.+. +..++.+ +..+..+..++..+.+.+.+++++.++.+.+.+.+..++.
T Consensus 173 --~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~-l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~ 249 (529)
T d1jdha_ 173 --GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV-LKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 249 (529)
T ss_dssp --TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHH-HHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHH
T ss_pred --hhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHH-HhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhh
Confidence 23567788899999999999998766544 5555554 4556678889999999999999999999888888888888
Q ss_pred HHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhh
Q 001349 510 FLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLR 589 (1094)
Q Consensus 510 ~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~ 589 (1094)
.|..+....+.. .........|+.++.+..++-+..++..|..|-.-.+..+.-+.+.++++.|+..+.
T Consensus 250 ~l~~ls~~~~~~-----------~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~ 318 (529)
T d1jdha_ 250 TLRNLSDAATKQ-----------EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 318 (529)
T ss_dssp HHHHHHTTCTTC-----------SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHhccccccch-----------hhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHH
Confidence 888876554322 222334556777787777777777888888886533344555667889999999876
Q ss_pred c-CCChHHHHHHHHHHHhcccc
Q 001349 590 N-SDYPAAQLAAAKTIVSLQGR 610 (1094)
Q Consensus 590 ~-~~~~~~~~~~~~~~~~l~g~ 610 (1094)
. ++...+|+.|+.+|.++...
T Consensus 319 ~~~~~~~~~~~a~~aL~~l~~~ 340 (529)
T d1jdha_ 319 RAGDREDITEPAICALRHLTSR 340 (529)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSS
T ss_pred hhhcchhHHHHHHHHhhcccch
Confidence 4 55667899999999998844
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.93 E-value=4.9e-09 Score=118.48 Aligned_cols=242 Identities=12% Similarity=0.049 Sum_probs=150.5
Q ss_pred EEEEEECCCeEEEEecCCCcceeEEEecc------------------------------cCCCeEEEEEecCCCEEEEEe
Q 001349 825 KIFSGHSDGTIKVWTGRGSILHLIQQIRE------------------------------HTKAVTGLAILQSGEMLYSGS 874 (1094)
Q Consensus 825 ~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~------------------------------H~~~V~sv~fspdg~~LaSgs 874 (1094)
.++||+.+|+|+|||+.++ +.++++.- |........++|||++|++..
T Consensus 13 ~f~Sgg~sG~V~V~dlpS~--r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d 90 (441)
T d1qnia2 13 GFWSGGHQGEVRVLGVPSM--RELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFIND 90 (441)
T ss_dssp EEEECBTTCCEEEEEETTT--EEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEE
T ss_pred EEEeCCCCCcEEEEeCCCC--cEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEc
Confidence 4778889999999999988 55665421 334455566689999986654
Q ss_pred -CCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEE-eCCeEEEEcCCCCceEEEEeCCEEEEEE
Q 001349 875 -LDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHL-RNGKTKLLNSSKYPKCLALVQGKVYCGC 952 (1094)
Q Consensus 875 -~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~-~~g~i~l~~~~~~v~~l~~s~~~l~sgs 952 (1094)
.+++|.+||+.+++...+...+....+..+. |+|+|+...+.. ....+.+-+....+ . .+...
T Consensus 91 ~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~-------~spdg~t~YV~~~~~~~v~~~~dg~~~---~-~~~~~---- 155 (441)
T d1qnia2 91 KANTRVARIRLDIMKTDKITHIPNVQAIHGLR-------LQKVPKTNYVFCNAEFVIPQPNDGTDF---S-LDNSY---- 155 (441)
T ss_dssp TTTTEEEEEETTTTEEEEEEECTTCCCEEEEE-------ECCSSBCCEEEEEECSCEESSCSSSCC---C-GGGEE----
T ss_pred CCCCEEEEEECCCCcEeeEEecCCCCCccceE-------EeccCCEEEEEeccCCcccccCccccc---c-ccccc----
Confidence 6789999999998644444444445555665 999998543222 22222110000000 0 00000
Q ss_pred cCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCC-----------------------------
Q 001349 953 QDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDG----------------------------- 1003 (1094)
Q Consensus 953 ~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg----------------------------- 1003 (1094)
..+..+|..+.+...... . ......+.|+|++.++++.+.+.
T Consensus 156 --~~~~~iD~~t~~v~~qI~------v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~ 226 (441)
T d1qnia2 156 --TMFTAIDAETMDVAWQVI------V-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAV 226 (441)
T ss_dssp --EEEEEEETTTCSEEEEEE------E-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHH
T ss_pred --ceEEeecCccceeeEEEe------c-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEe
Confidence 234556777666553211 1 12456677777777776665432
Q ss_pred -----------CEEEEEECCCCeEEEEecCCCCEEEEEEeCC--E-EEEEEcCCeEEEEECCCCcE-----------EEE
Q 001349 1004 -----------AAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--L-VYLGCKGGTVEIWDQKRQIR-----------IET 1058 (1094)
Q Consensus 1004 -----------~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~-l~sgs~dg~I~vwd~~t~~~-----------~~~ 1058 (1094)
+.+.+++......+..++.+.....+.++|| + ++++..+++|.|||+.+... +..
T Consensus 227 ~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~ 306 (441)
T d1qnia2 227 KAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVA 306 (441)
T ss_dssp HTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEE
T ss_pred cCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEe
Confidence 2455566666667777776666788999999 4 45567899999999865221 111
Q ss_pred ecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1059 LQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1059 l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
. ....-.....+|+++|....+...|..|..|++
T Consensus 307 ~-~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~ 340 (441)
T d1qnia2 307 E-PELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNI 340 (441)
T ss_dssp C-CBCCSCEEEEEECSSSEEEEEETTTTEEEEEEH
T ss_pred e-cccccCcccceecCCceEEEcccccceEEEecc
Confidence 1 111112455689999998889999999999985
|
| >d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Not-4 N-terminal RING finger domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=2.3e-10 Score=88.67 Aligned_cols=47 Identities=17% Similarity=0.255 Sum_probs=39.4
Q ss_pred eeccCccccccC----cEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCC
Q 001349 164 FVCPITTHIFDD----PVTLETGQTYERRAIQEWIERGNSSCPITRQKLSS 210 (1094)
Q Consensus 164 ~~CpIc~~~~~d----Pv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~ 210 (1094)
+.||||++-|.+ +++++|||+||+.||.+|+...+..||.||+++..
T Consensus 1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~ 51 (52)
T d1ur6b_ 1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 51 (52)
T ss_dssp CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence 369999999854 33458999999999999998766679999998864
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=8.5e-09 Score=121.36 Aligned_cols=264 Identities=13% Similarity=0.097 Sum_probs=192.9
Q ss_pred hHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC-----hHHHHHHHHhcCCChHHHHHh--
Q 001349 318 FVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG-----LLEAVVLIDLLRPSTRTLIEM-- 390 (1094)
Q Consensus 318 ~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g-----~~~Aa~~l~~L~~~~~~~~~~-- 390 (1094)
++++| .+.+..+++.|+.+|.++. +++..+..+....+.++.|+.+|+.. ...|+.+|..|...+++...+
T Consensus 22 L~~lL-~~~~~~v~~~A~~~l~~l~-~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~ 99 (529)
T d1jdha_ 22 LTKLL-NDEDQVVVNKAAVMVHQLS-KKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFK 99 (529)
T ss_dssp HHHHH-TCSCHHHHHHHHHHHHHHH-TSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHH-cCCCHHHHHHHHHHHHHHH-hccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence 45555 4678899999999999995 55556666776667789999999763 456888999998777765444
Q ss_pred -hhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHH
Q 001349 391 -DMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGIL 469 (1094)
Q Consensus 391 -~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l 469 (1094)
+.+|+|+.+|.++..+- +..|+..|..|... +...+..+...|+|+.|++.++.++.+.+..++..|
T Consensus 100 ~g~i~~Li~lL~~~~~~v-------~~~a~~aL~~l~~~-----~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L 167 (529)
T d1jdha_ 100 SGGIPALVKMLGSPVDSV-------LFYAITTLHNLLLH-----QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 167 (529)
T ss_dssp TTHHHHHHHHTTCSCHHH-------HHHHHHHHHHHHHH-----CTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCCHHH-------HHHHHHHHHHhhcc-----cchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHH
Confidence 44599999998764331 44555566666322 234566778999999999999999999999999999
Q ss_pred HHHhhccCcchhhHhhhcCchhHHHHHHhcCC-chhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhh
Q 001349 470 LRCMQEDGKCRNSIADKAELAPVMESFMAASD-GERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQT 548 (1094)
Q Consensus 470 ~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~ 548 (1094)
..+...+..++..+...+.+++++.+++..+. ..+..+...|..+..- . +....+-+.|.+.. |..+++.
T Consensus 168 ~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~-~-----~~~~~~~~~g~~~~---L~~ll~~ 238 (529)
T d1jdha_ 168 QILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-S-----SNKPAIVEAGGMQA---LGLHLTD 238 (529)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-T-----THHHHHHHTTHHHH---HHTTTTS
T ss_pred HHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcc-c-----cccchhhhhhhhhh---HHHHhcc
Confidence 88888888899999999999999999987654 4455677777766432 1 22234555565444 7777776
Q ss_pred cCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcc
Q 001349 549 ANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQ 608 (1094)
Q Consensus 549 ~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 608 (1094)
.+++-+.-++..|.++. +........++.++.|+..+++++ ..+|+.|+.+|.+|+
T Consensus 239 ~~~~~~~~a~~~l~~ls---~~~~~~~~~~~~i~~Lv~ll~~~~-~~~~~~a~~~L~~l~ 294 (529)
T d1jdha_ 239 PSQRLVQNCLWTLRNLS---DAATKQEGMEGLLGTLVQLLGSDD-INVVTCAAGILSNLT 294 (529)
T ss_dssp SCHHHHHHHHHHHHHHH---TTCTTCSCCHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHT
T ss_pred cchhhhhhhhhHHHhcc---ccccchhhhhhcchhhhhhccccc-HHHHHHHHHHHHhhc
Confidence 66665556666666654 333334445899999999987654 568999999999986
|
| >d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: EL5 RING-H2 domain species: Rice (Oryza sativa) [TaxId: 4530]
Probab=98.90 E-value=2.6e-10 Score=89.28 Aligned_cols=47 Identities=19% Similarity=0.547 Sum_probs=39.7
Q ss_pred CCceeccCccccccCc---EEc-CCcccccHHhHHHHHHhCCCCCCCCCcCC
Q 001349 161 PKDFVCPITTHIFDDP---VTL-ETGQTYERRAIQEWIERGNSSCPITRQKL 208 (1094)
Q Consensus 161 ~~~~~CpIc~~~~~dP---v~~-~cGhtfc~~ci~~~~~~~~~~CP~c~~~~ 208 (1094)
+++..||||++-|.+. +.+ +|||.||..||.+|+.. +..||.||+.+
T Consensus 3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~i 53 (55)
T d1iyma_ 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV 53 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred CCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHh-CCcCCCCCCEe
Confidence 4578899999999753 344 69999999999999987 66899999875
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.87 E-value=1.8e-08 Score=114.84 Aligned_cols=318 Identities=10% Similarity=0.077 Sum_probs=218.9
Q ss_pred HHHHHHhhhccccchHhHHHHHHHHHHHHHhccc--hHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhccccc
Q 001349 269 LKHAITSLCMSEILNESEMAVLQIERCWLEASME--LDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDK 346 (1094)
Q Consensus 269 l~~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~--~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~ 346 (1094)
++.++..+. ++..+.+..|+..++++....... ..+... +++.-++++|-.+.+..++..+..+|.++.+.+.
T Consensus 15 i~~lv~~l~-s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~----g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~ 89 (434)
T d1q1sc_ 15 VEDIVKGIN-SNNLESQLQATQAARKLLSREKQPPIDNIIRA----GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS 89 (434)
T ss_dssp HHHHHHHHT-SSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHT----TCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHC----CCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCh
Confidence 344455554 445566788888888876432221 123333 3344466666566678899999999999977666
Q ss_pred chhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCChHH----HHHhhhhHHHHHHHHhccccccccccCchhhH
Q 001349 347 SVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRT----LIEMDMMESLMTVIKKKEEDFLKMCLKPKSVS 418 (1094)
Q Consensus 347 ~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~~~----~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa 418 (1094)
..+..+. ..+.++.|+.+|++. ...|..+|.+|....++ +...+.++.|+.++.......... ......
T Consensus 90 ~~~~~i~-~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~--~~~~~~ 166 (434)
T d1q1sc_ 90 EQTKAVV-DGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLAC--GYLRNL 166 (434)
T ss_dssp HHHHHHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCH--HHHHHH
T ss_pred hhhhHhh-hccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchH--HHHHHH
Confidence 5666666 456899999999887 55677799998654432 233445589999887754321110 001112
Q ss_pred HHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHh
Q 001349 419 VLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMA 498 (1094)
Q Consensus 419 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~ 498 (1094)
...+..+.... ..........+.++.|+..+..++.+.+..++..|..+...+...+..+...+.++.+++++.+
T Consensus 167 ~~~l~~~~~~~-----~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~ 241 (434)
T d1q1sc_ 167 TWTLSNLCRNK-----NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA 241 (434)
T ss_dssp HHHHHHHTCCC-----TTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC
T ss_pred HHHHHHHhhcc-----cccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhccccccc
Confidence 22333332211 1222233456778999999999999999999998888877777788888899999999999998
Q ss_pred cCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHH
Q 001349 499 ASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYRE 578 (1094)
Q Consensus 499 ~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~re 578 (1094)
.+...+..++..|..+...+ .+....+-+.|.+.. |..++++..++-+..++..|.+|-.-.+.....+.+.
T Consensus 242 ~~~~~~~~al~~l~~l~~~~-----~~~~~~~~~~~~~~~---l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~ 313 (434)
T d1q1sc_ 242 TELPIVTPALRAIGNIVTGT-----DEQTQKVIDAGALAV---FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH 313 (434)
T ss_dssp SCHHHHHHHHHHHHHHTTSC-----HHHHHHHHHTTGGGG---HHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred chhhhhhchhhhhhhHHhhh-----hHHHHHHHhccccch---HHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhh
Confidence 88888888899998887652 233344445666665 7778888888888899999998865333334445567
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHhcc
Q 001349 579 EAIDTLISCLRNSDYPAAQLAAAKTIVSLQ 608 (1094)
Q Consensus 579 ea~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 608 (1094)
+.++.++..+.+.+ ..+|..|+.+|.++.
T Consensus 314 ~~i~~li~~l~~~~-~~v~~~a~~~l~nl~ 342 (434)
T d1q1sc_ 314 GLVPFLVGVLSKAD-FKTQKEAAWAITNYT 342 (434)
T ss_dssp TCHHHHHHHHHSSC-HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 78999999998775 567999999998875
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.65 E-value=2.6e-07 Score=104.81 Aligned_cols=297 Identities=11% Similarity=0.108 Sum_probs=202.5
Q ss_pred hHHHHHHHHHHHHHhccc-hHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHH
Q 001349 285 SEMAVLQIERCWLEASME-LDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIV 363 (1094)
Q Consensus 285 ~e~a~~~i~~~~~~~~~~-~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~ 363 (1094)
+..++..+..++...... ..+.. .+++.-++..| .+.+..+++.++.+|.++...++..+..+. ..+.++.|+
T Consensus 74 ~~~a~~~L~~la~~~~~~~~~i~~----~~~i~~l~~~L-~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~-~~~~~~~l~ 147 (434)
T d1q1sc_ 74 QFESAWALTNIASGTSEQTKAVVD----GGAIPAFISLL-ASPHAHISEQAVWALGNIAGDGSAFRDLVI-KHGAIDPLL 147 (434)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHH----TTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTCHHHHH
T ss_pred HHHHHHHHHHHhcCChhhhhHhhh----ccchhhhhhcc-ccCCHHHHHHHHHHHHHHhccchHHHHHHH-HhhhhhHHH
Confidence 455666666666443322 22332 23344455554 467899999999999999776665555554 556889999
Q ss_pred HHHhcCh---------HHHHHHHHhcCCChH---HH-HHhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCc
Q 001349 364 ALFKKGL---------LEAVVLIDLLRPSTR---TL-IEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSE 430 (1094)
Q Consensus 364 ~lLk~g~---------~~Aa~~l~~L~~~~~---~~-~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~ 430 (1094)
.+|.... ..++..+.++..... .. ..-+.+|.|+.++...+... ...++..+..|...
T Consensus 148 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~-------~~~a~~~l~~l~~~-- 218 (434)
T d1q1sc_ 148 ALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV-------LADSCWAISYLTDG-- 218 (434)
T ss_dssp HHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHH-------HHHHHHHHHHHTSS--
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccch-------hhhHHhhhcccchh--
Confidence 9997651 234445666644322 22 23334488888776654221 23445556655322
Q ss_pred ccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHH
Q 001349 431 ESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCF 510 (1094)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 510 (1094)
..+....+...|+++.|++.++.++.+-+..+..+|.+++..+...+..+.+.+.+++++.++.+.....+..++..
T Consensus 219 ---~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~ 295 (434)
T d1q1sc_ 219 ---PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT 295 (434)
T ss_dssp ---CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHH
T ss_pred ---hhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHH
Confidence 23556667888999999999999999999999999888888788888999999999999999998888888889999
Q ss_pred HHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCC-ccHHHHHHHHHHHhh
Q 001349 511 LSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMS-IYREEAIDTLISCLR 589 (1094)
Q Consensus 511 l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~-~~reea~~~~~~~l~ 589 (1094)
|..|.... ......+.+.|.+ ..++..+....++-+--++..|..|-...++.... +...++++.|+..|.
T Consensus 296 L~~l~~~~-----~~~~~~i~~~~~i---~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~ 367 (434)
T d1q1sc_ 296 MSNITAGR-----QDQIQQVVNHGLV---PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS 367 (434)
T ss_dssp HHHHTTSC-----HHHHHHHHHTTCH---HHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTT
T ss_pred Hhhhcccc-----chhHHHHhhhhhH---HHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhc
Confidence 99987652 2333445555554 45778888888888888888888877665554322 335567899998887
Q ss_pred cCCChHHHHHHHHHHHhcc
Q 001349 590 NSDYPAAQLAAAKTIVSLQ 608 (1094)
Q Consensus 590 ~~~~~~~~~~~~~~~~~l~ 608 (1094)
..+ ++.+..+..+|.++-
T Consensus 368 ~~d-~~~~~~~l~~l~~ll 385 (434)
T d1q1sc_ 368 AKD-TKIIQVILDAISNIF 385 (434)
T ss_dssp SSC-HHHHHHHHHHHHHHH
T ss_pred CCC-HHHHHHHHHHHHHHH
Confidence 554 566777777877754
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.63 E-value=3.4e-06 Score=91.00 Aligned_cols=229 Identities=14% Similarity=0.088 Sum_probs=138.4
Q ss_pred cEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc--eE
Q 001349 815 KVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE--IH 890 (1094)
Q Consensus 815 ~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~--~~ 890 (1094)
.+..++++|| ++++...+++|..||..+. ...+......+.+++|++||+++++...++.+..|+..... ..
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~----~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~ 104 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN----QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE 104 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCC----EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC----EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccccee
Confidence 4778999997 7888888999999986654 23344566789999999999999999888888888875543 22
Q ss_pred EEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEE
Q 001349 891 CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATI 970 (1094)
Q Consensus 891 ~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~ 970 (1094)
.+...........+. +.++|+. +++-+.++.+..+|...+.....
T Consensus 105 ~~~~~~~~~~~n~i~-------~~~~g~~----------------------------~v~~~~~~~i~~~~~~~~~~~~~ 149 (302)
T d2p4oa1 105 TLLTLPDAIFLNGIT-------PLSDTQY----------------------------LTADSYRGAIWLIDVVQPSGSIW 149 (302)
T ss_dssp EEEECTTCSCEEEEE-------ESSSSEE----------------------------EEEETTTTEEEEEETTTTEEEEE
T ss_pred eccccCCccccceeE-------EccCCCE----------------------------EeeccccccceeeeccCCcceeE
Confidence 222222222223332 4555543 33334556666677666543322
Q ss_pred eccc----eeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEE---EEecCCCCEEEEEEeCC--EEEEEEc
Q 001349 971 QTGH----RKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMV---GSLPTLSEVRAMVVSSE--LVYLGCK 1041 (1094)
Q Consensus 971 ~~~~----~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~---~~~~~~~~v~~l~~spd--~l~sgs~ 1041 (1094)
.... ............+.++.+..+. +.+.. +.|..++....... ..+........++++++ +.++...
T Consensus 150 ~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~-~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~ 227 (302)
T d2p4oa1 150 LEHPMLARSNSESVFPAANGLKRFGNFLYV-SNTEK-MLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHI 227 (302)
T ss_dssp EECGGGSCSSTTCCSCSEEEEEEETTEEEE-EETTT-TEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBT
T ss_pred ecCCccceeeccCcccccccccccCCceee-ecCCC-CeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcC
Confidence 1110 0111222345677777654443 33344 48888887653322 22223445567999888 4455556
Q ss_pred CCeEEEEECCCCcE-EEEecccCCcceEEEEE---cCCCCEEEEEeCC
Q 001349 1042 GGTVEIWDQKRQIR-IETLQTGTSGKVQCMAL---DDNEEFLVIGTSD 1085 (1094)
Q Consensus 1042 dg~I~vwd~~t~~~-~~~l~~~h~~~I~~l~~---Spdg~~L~sgs~D 1085 (1094)
++.|..|+...... +.... ..-...++++| ++|++.|+.++..
T Consensus 228 ~~~V~~i~p~G~~~~~~~~~-~~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 228 YNSVVRIAPDRSTTIIAQAE-QGVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp TCCEEEECTTCCEEEEECGG-GTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCcEEEECCCCCEEEEEecC-CCCCCceEEEEcCCCCCCCEEEEECCC
Confidence 88899998764332 22221 22346899999 7788988776654
|
| >d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Deltex protein 2 RING-H2 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.61 E-value=1.6e-08 Score=92.77 Aligned_cols=49 Identities=10% Similarity=0.175 Sum_probs=40.2
Q ss_pred ceeccCccccccCc------------------EEcCCcccccHHhHHHHHHhC----CCCCCCCCcCCCCC
Q 001349 163 DFVCPITTHIFDDP------------------VTLETGQTYERRAIQEWIERG----NSSCPITRQKLSST 211 (1094)
Q Consensus 163 ~~~CpIc~~~~~dP------------------v~~~cGhtfc~~ci~~~~~~~----~~~CP~c~~~~~~~ 211 (1094)
+..|+||++-|.++ .+++|||.||..||..|+... +.+||.||..+..+
T Consensus 25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T d1v87a_ 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred cccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhccC
Confidence 56799999988654 357999999999999999863 34699999887554
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.55 E-value=4.6e-07 Score=105.43 Aligned_cols=312 Identities=12% Similarity=0.121 Sum_probs=212.2
Q ss_pred HHHHHHhhhccccchHhHHHHHHHHHHHHHhccc--hHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhccccc
Q 001349 269 LKHAITSLCMSEILNESEMAVLQIERCWLEASME--LDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDK 346 (1094)
Q Consensus 269 l~~~i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~--~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~ 346 (1094)
+...+..+ .++....+..|+..++++....+.. ..+... +++..++.+|-...+..++..|..+|.++.+.+.
T Consensus 78 l~~~~~~~-~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~----g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~ 152 (503)
T d1wa5b_ 78 LPQMTQQL-NSDDMQEQLSATVKFRQILSREHRPPIDVVIQA----GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS 152 (503)
T ss_dssp HHHHHHHH-SCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHT----TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHC----CChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCH
Confidence 34444444 3444455677777777765322211 122322 3344466666666678899999999999987766
Q ss_pred chhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCC-hHHH---HHhhhhHHHHHHHHhccccccccccCchhhH
Q 001349 347 SVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPS-TRTL---IEMDMMESLMTVIKKKEEDFLKMCLKPKSVS 418 (1094)
Q Consensus 347 ~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~-~~~~---~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa 418 (1094)
.....+. ..|.++.|+.+|+++ ...|+.+|.+|... ++.. ...+.+++|+.++....... ...+
T Consensus 153 ~~~~~~~-~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~-------~~~~ 224 (503)
T d1wa5b_ 153 AQTKVVV-DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSL-------IRTA 224 (503)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHH-------HHHH
T ss_pred HHHHHHH-hCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHH-------HHHH
Confidence 5555555 567899999999887 66778899998654 3333 34455699999887643211 2344
Q ss_pred HHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHh
Q 001349 419 VLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMA 498 (1094)
Q Consensus 419 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~ 498 (1094)
..+|..|..... .........++++.|+..+..++.+.+..++..|..++..+......+.+.+.++.++.++.+
T Consensus 225 ~~~l~nl~~~~~-----~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~ 299 (503)
T d1wa5b_ 225 TWTLSNLCRGKK-----PQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH 299 (503)
T ss_dssp HHHHHHHHCCSS-----SCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred HHHHHHHhcCCc-----cchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccC
Confidence 455666654332 112223456789999999999999999999999988888888888899999999999999998
Q ss_pred cCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCC-CCCCccH
Q 001349 499 ASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEP-RKMSIYR 577 (1094)
Q Consensus 499 ~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~-~~~~~~r 577 (1094)
.+...+..++.+|..+.... ......+.+.|.++. |..+++...++-+.-++..|.++.. ..+ ....+..
T Consensus 300 ~~~~v~~~al~~l~nl~~~~-----~~~~~~~~~~~~l~~---l~~ll~~~~~~i~~~~~~~l~nl~~-~~~~~~~~i~~ 370 (503)
T d1wa5b_ 300 ESTLVQTPALRAVGNIVTGN-----DLQTQVVINAGVLPA---LRLLLSSPKENIKKEACWTISNITA-GNTEQIQAVID 370 (503)
T ss_dssp SCHHHHHHHHHHHHHHTTSC-----HHHHHHHHHTTHHHH---HHHHTTCSCHHHHHHHHHHHHHHTT-SCHHHHHHHHH
T ss_pred CchhhhhhHHHHHHHHHHHH-----HHHHHhhhccchHHH---HHHHhcCCCHHHHHHHHHHHHHHhh-ccHHHHHHHHH
Confidence 88888888999999887652 222233444454444 6677776666656677777877754 222 2233345
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHhcc
Q 001349 578 EEAIDTLISCLRNSDYPAAQLAAAKTIVSLQ 608 (1094)
Q Consensus 578 eea~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 608 (1094)
...+..++..|.+++. .+|..|+.+|.++.
T Consensus 371 ~~~l~~li~~l~~~~~-~v~~~a~~~l~nl~ 400 (503)
T d1wa5b_ 371 ANLIPPLVKLLEVAEY-KTKKEACWAISNAS 400 (503)
T ss_dssp TTCHHHHHHHHHHSCH-HHHHHHHHHHHHHH
T ss_pred ccccchhHHhcccCCh-hHHHHHHHHHHHHH
Confidence 5677888888887764 67889999999865
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.54 E-value=2.3e-05 Score=83.20 Aligned_cols=232 Identities=8% Similarity=0.114 Sum_probs=143.3
Q ss_pred ccccccCcEEEEeeCCCCeEEEeCCc-ceeecc------cCCCcEEEEEEeCC---EEE-EEECCCeEEEEecCCCccee
Q 001349 779 SPLAFEMVKVLSNGHDSSADFWNHRE-LVHVDS------SENGKVLSIACFRD---KIF-SGHSDGTIKVWTGRGSILHL 847 (1094)
Q Consensus 779 ~~~~~d~~~l~s~s~dg~I~vWd~~~-~~~~~~------~h~~~V~~l~fspd---~La-Sgs~Dg~I~vWd~~t~~~~~ 847 (1094)
.++.++++.+++-..++.|++||... ....+. +.......+++.++ .++ ..+.++.|.+++.... .
T Consensus 28 vavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~---~ 104 (279)
T d1q7fa_ 28 VAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQ---F 104 (279)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSC---E
T ss_pred EEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccccc---c
Confidence 34556777777777778899998762 222221 11223456666553 333 3345667888887544 4
Q ss_pred EEEe-cccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeC
Q 001349 848 IQQI-REHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRN 926 (1094)
Q Consensus 848 ~~~l-~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~ 926 (1094)
...+ ..+......+++.++|.++++....+.+.+++.+..................++ +.++|..
T Consensus 105 ~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~-------~d~~g~i------- 170 (279)
T d1q7fa_ 105 VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVV-------VNDKQEI------- 170 (279)
T ss_dssp EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEE-------ECSSSEE-------
T ss_pred eeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceeecccccccccccceee-------eccceeE-------
Confidence 4444 234566788999999988887777777777776553222221111111222222 3333332
Q ss_pred CeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEE
Q 001349 927 GKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAV 1006 (1094)
Q Consensus 927 g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I 1006 (1094)
+++....+.|++||.. |+.+..+.. .++......+++++++.++++-..++..|
T Consensus 171 ---------------------~v~d~~~~~V~~~d~~-G~~~~~~g~----~g~~~~P~giavD~~G~i~Vad~~~~~~v 224 (279)
T d1q7fa_ 171 ---------------------FISDNRAHCVKVFNYE-GQYLRQIGG----EGITNYPIGVGINSNGEILIADNHNNFNL 224 (279)
T ss_dssp ---------------------EEEEGGGTEEEEEETT-CCEEEEESC----TTTSCSEEEEEECTTCCEEEEECSSSCEE
T ss_pred ---------------------EeeeccccceeeeecC-Cceeeeecc----cccccCCcccccccCCeEEEEECCCCcEE
Confidence 3444556778888864 444433211 23445678899999988777755444579
Q ss_pred EEEECCCCeEEEEec---CCCCEEEEEEeCC-EEEEEEcCCeEEEEECCCCc
Q 001349 1007 KMWSTSNYNMVGSLP---TLSEVRAMVVSSE-LVYLGCKGGTVEIWDQKRQI 1054 (1094)
Q Consensus 1007 ~iwd~~~~~~~~~~~---~~~~v~~l~~spd-~l~sgs~dg~I~vwd~~t~~ 1054 (1094)
.+|+. +|+.+.++. .......+++.+| .+++++.++.|++|......
T Consensus 225 ~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~~~n~~v~~fr~~~~~ 275 (279)
T d1q7fa_ 225 TIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQLA 275 (279)
T ss_dssp EEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSCCC
T ss_pred EEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcEEEEeCCCeEEEEEeeeec
Confidence 99984 688777775 2346889999999 77778889999999876543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.52 E-value=1.1e-05 Score=89.44 Aligned_cols=260 Identities=10% Similarity=0.120 Sum_probs=147.3
Q ss_pred EEEEEEC--CCeEEEE--ecCCCcceeEEEec-ccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCc-eEEEEecccC
Q 001349 825 KIFSGHS--DGTIKVW--TGRGSILHLIQQIR-EHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEE-IHCVQVHDIK 898 (1094)
Q Consensus 825 ~LaSgs~--Dg~I~vW--d~~t~~~~~~~~l~-~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~-~~~~~~~~~~ 898 (1094)
.|+.|++ .|.|.++ |.+++.+..+.... .....+..|+|+|++++|++++. +.+..|.+.... ..........
T Consensus 4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~ 82 (365)
T d1jofa_ 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCC
Confidence 3666754 5567665 55555443333322 34555677999999999998876 467778776432 2222222222
Q ss_pred ccceeeeecCceEEEeeCCCeEEEEEeC---CeE------------EEEc-----------------CCCCceEEEEeC-
Q 001349 899 DQIQNLAVSNSILCFIPQGAGIKVHLRN---GKT------------KLLN-----------------SSKYPKCLALVQ- 945 (1094)
Q Consensus 899 ~~V~~v~~~~~~~~fspdg~~l~~~~~~---g~i------------~l~~-----------------~~~~v~~l~~s~- 945 (1094)
.....+. ++++++.+.+...+ +.+ .++. ....+.++.|++
T Consensus 83 ~~p~~v~-------~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPd 155 (365)
T d1jofa_ 83 GHPRAND-------ADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPT 155 (365)
T ss_dssp SSGGGGC-------TTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTT
T ss_pred CCcEEEE-------ECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCC
Confidence 2233333 44444432221110 111 1111 123467888885
Q ss_pred -CEEEEEEc-CCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeE--E---E
Q 001349 946 -GKVYCGCQ-DGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNM--V---G 1018 (1094)
Q Consensus 946 -~~l~sgs~-Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~--~---~ 1018 (1094)
..++++.. ...|.+|+............ ............+.|+|++.++......+++|.+|++..+.. + .
T Consensus 156 G~~l~v~d~g~d~v~~~~~~~~g~~~~~~~-~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~ 234 (365)
T d1jofa_ 156 ETYLYSADLTANKLWTHRKLASGEVELVGS-VDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHH 234 (365)
T ss_dssp SSEEEEEETTTTEEEEEEECTTSCEEEEEE-EECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred CCEEEEeeCCCCEEEEEEccCCCceeeccc-eeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEee
Confidence 34655543 45788887654332221111 112233467889999999998877777667999999876432 2 1
Q ss_pred Eec---------------CCCCEEEEEEeCC--EEEEEEc-C-----CeEEEEECCCCcEEEE---ec--ccCCcceEEE
Q 001349 1019 SLP---------------TLSEVRAMVVSSE--LVYLGCK-G-----GTVEIWDQKRQIRIET---LQ--TGTSGKVQCM 1070 (1094)
Q Consensus 1019 ~~~---------------~~~~v~~l~~spd--~l~sgs~-d-----g~I~vwd~~t~~~~~~---l~--~~h~~~I~~l 1070 (1094)
... +......+.++|| +++++.. + +.|..|++.....+.. +. ........++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i 314 (365)
T d1jofa_ 235 SFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAV 314 (365)
T ss_dssp EEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCE
T ss_pred eeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEE
Confidence 111 1123567889998 6666532 2 3477777654322221 11 1223456789
Q ss_pred EEcC-CCCEEEEEe-CCCcEEEEeC
Q 001349 1071 ALDD-NEEFLVIGT-SDGRIQAWGL 1093 (1094)
Q Consensus 1071 ~~Sp-dg~~L~sgs-~DG~I~iWdl 1093 (1094)
+++| +|++|++++ .++.|.+|++
T Consensus 315 ~~~p~~G~~l~va~~~s~~v~v~~~ 339 (365)
T d1jofa_ 315 SPCPWSDEWMAITDDQEGWLEIYRW 339 (365)
T ss_dssp EECTTCTTEEEEECSSSCEEEEEEE
T ss_pred EecCCCCCEEEEEeCCCCeEEEEEE
Confidence 9998 899887664 6789999975
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.50 E-value=2e-05 Score=82.36 Aligned_cols=213 Identities=15% Similarity=0.092 Sum_probs=119.2
Q ss_pred eEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCC---cEEEEECCCCceEEEEecccCccceeeeecCce
Q 001349 834 TIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDK---TARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSI 910 (1094)
Q Consensus 834 ~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~Dg---tI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~ 910 (1094)
.|.|-|..++. .+.+..+...+.+-+|||||+.||-.+.+. .+.+.+..++....... .........
T Consensus 20 ~l~i~d~dG~~---~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----- 89 (269)
T d2hqsa1 20 ELRVSDYDGYN---QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS--FPRHNGAPA----- 89 (269)
T ss_dssp EEEEEETTSCS---CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC--CSSCEEEEE-----
T ss_pred EEEEEcCCCCC---cEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEee--eecccccce-----
Confidence 57777887663 233345677789999999999998765543 46666777765433332 234444444
Q ss_pred EEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEe
Q 001349 911 LCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVH 990 (1094)
Q Consensus 911 ~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs 990 (1094)
|+|+|+.++...... ....+..+........ .............++
T Consensus 90 --~spdg~~i~~~~~~~-------------------------~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 135 (269)
T d2hqsa1 90 --FSPDGSKLAFALSKT-------------------------GSLNLYVMDLASGQIR-------QVTDGRSNNTEPTWF 135 (269)
T ss_dssp --ECTTSSEEEEEECTT-------------------------SSCEEEEEETTTCCEE-------ECCCCSSCEEEEEEC
T ss_pred --ecCCCCeeeEeeecC-------------------------Cccceeecccccccce-------eeeeccccccccccc
Confidence 889998765433221 0011222222222221 111222333444555
Q ss_pred CCccEEEEEEC-CC-CEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEE-EEcCCeE--EEEECCCCcEEEEecccC
Q 001349 991 NGLVYTASTSL-DG-AAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYL-GCKGGTV--EIWDQKRQIRIETLQTGT 1063 (1094)
Q Consensus 991 ~~~~~las~s~-Dg-~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~s-gs~dg~I--~vwd~~t~~~~~~l~~~h 1063 (1094)
+++......+. +| ..|.+.+...+................|+|+ .++. ...++.. .+.|...+.. ..+ .+
T Consensus 136 ~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~--~~ 212 (269)
T d2hqsa1 136 PDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVL--SS 212 (269)
T ss_dssp TTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EEC--CC
T ss_pred cccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeEeecccccc-eEe--ec
Confidence 55444333332 22 2566677766655444445666778899998 4444 4444444 4445555543 233 24
Q ss_pred CcceEEEEEcCCCCEEEEEeC---CCcEEEEeC
Q 001349 1064 SGKVQCMALDDNEEFLVIGTS---DGRIQAWGL 1093 (1094)
Q Consensus 1064 ~~~I~~l~~Spdg~~L~sgs~---DG~I~iWdl 1093 (1094)
........|||||+.|+..+. .+.|++|++
T Consensus 213 ~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~ 245 (269)
T d2hqsa1 213 TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVST 245 (269)
T ss_dssp SSSCEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred CccccceEECCCCCEEEEEEcCCCCcEEEEEEC
Confidence 456778899999999875544 335777775
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.47 E-value=1.2e-05 Score=86.38 Aligned_cols=232 Identities=9% Similarity=0.018 Sum_probs=147.7
Q ss_pred cccccccCcEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEE-eccc
Q 001349 778 YSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQ-IREH 854 (1094)
Q Consensus 778 ~~~~~~d~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~-l~~H 854 (1094)
..++.+||+.+++...+++|..|+.......+....+.+.+++|++| ++++...++.+..|+..+........ ....
T Consensus 32 ~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (302)
T d2p4oa1 32 NLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPD 111 (302)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTT
T ss_pred CEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCC
Confidence 45678899999999999999888887666666777889999999997 78888888888888876432122111 1234
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC
Q 001349 855 TKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS 934 (1094)
Q Consensus 855 ~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~ 934 (1094)
....+.+++.++|+++++-+.++.+..+|..++.................. .
T Consensus 112 ~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~ 163 (302)
T d2p4oa1 112 AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSES----------------------------V 163 (302)
T ss_dssp CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTC----------------------------C
T ss_pred ccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccC----------------------------c
Confidence 566889999999999999888999999998887533322221111100000 0
Q ss_pred CCCceEEEEeCCE-EEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCC
Q 001349 935 SKYPKCLALVQGK-VYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN 1013 (1094)
Q Consensus 935 ~~~v~~l~~s~~~-l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~ 1013 (1094)
......+.+.++. +++.+..+.|..++......... ............+++++++.+.++...++ .|..|+...
T Consensus 164 ~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~pdgia~d~dG~l~va~~~~~-~V~~i~p~G 238 (302)
T d2p4oa1 164 FPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGE----PEIFVEQTNIDDFAFDVEGNLYGATHIYN-SVVRIAPDR 238 (302)
T ss_dssp SCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCC----CEEEEESCCCSSEEEBTTCCEEEECBTTC-CEEEECTTC
T ss_pred ccccccccccCCceeeecCCCCeEEeccccccccccc----cccccCCCCCcceEECCCCCEEEEEcCCC-cEEEECCCC
Confidence 0112233333333 45556778888888776543211 11111223456799999998777766665 788887653
Q ss_pred CeE-EEEec-CCCCEEEEEE---eCC--EEEEEEcC
Q 001349 1014 YNM-VGSLP-TLSEVRAMVV---SSE--LVYLGCKG 1042 (1094)
Q Consensus 1014 ~~~-~~~~~-~~~~v~~l~~---spd--~l~sgs~d 1042 (1094)
... +.... .....++++| ++| .+++++..
T Consensus 239 ~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 239 STTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp CEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence 322 22222 4466899999 455 56665543
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=2.3e-06 Score=90.47 Aligned_cols=184 Identities=7% Similarity=0.057 Sum_probs=136.5
Q ss_pred hHHHHHHHHHHHHHhccchHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHH
Q 001349 285 SEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVA 364 (1094)
Q Consensus 285 ~e~a~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~ 364 (1094)
.+.|+..+..++...+....+...+..+. ++..+..+.++.++..|..+|.++...++.+...+.
T Consensus 34 ~~~Al~~L~~L~~~~d~a~~l~~~gg~~~----ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~----------- 98 (264)
T d1xqra1 34 REGALELLADLCENMDNAADFCQLSGMHL----LVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVL----------- 98 (264)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHTTHHHH----HHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHcCCHHH----HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 45566666666644333355554444433 455566688999999999999999766664444333
Q ss_pred HHhcChHHHHHHHHhcCCChHHHHHhhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccc
Q 001349 365 LFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSS 444 (1094)
Q Consensus 365 lLk~g~~~Aa~~l~~L~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~ 444 (1094)
..+.+|+|+.+|.+.... ..+..++..|..|.. .+..+...+...
T Consensus 99 ------------------------~~~~i~~Lv~lL~~~~~~------~v~~~a~~aL~~l~~-----~~~~~~~~~~~~ 143 (264)
T d1xqra1 99 ------------------------GLGALRKLLRLLDRDACD------TVRVKALFAISCLVR-----EQEAGLLQFLRL 143 (264)
T ss_dssp ------------------------HTTHHHHHHHHHHHCSCH------HHHHHHHHHHHHHHT-----TCHHHHHHHHHT
T ss_pred ------------------------HcCchHHHHHHhhcCCCH------HHHHHHHHHHHHHhc-----cchhhHHHHHHh
Confidence 233457777777654322 124556666777633 334667788899
Q ss_pred hhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhcc
Q 001349 445 KVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLN 518 (1094)
Q Consensus 445 ~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~ 518 (1094)
||++.|+..++.++.+.+..++.+|..++..+...+..+...+.++.+++++.+.+...+..|+..|..|....
T Consensus 144 ~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~ 217 (264)
T d1xqra1 144 DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF 217 (264)
T ss_dssp THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred hhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987653
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.44 E-value=1.7e-05 Score=83.24 Aligned_cols=232 Identities=14% Similarity=0.074 Sum_probs=133.0
Q ss_pred CcEEEEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceE
Q 001349 814 GKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIH 890 (1094)
Q Consensus 814 ~~V~~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~ 890 (1094)
-...++++.++ +++..+..+.|..++..+.. .......+ ......++++++|+++++....+.+++++-.++.
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~-~~~~~~~~-~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~-- 89 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG-TTVLPFNG-LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ-- 89 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----C-EEECCCCS-CCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC--
T ss_pred CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCce-EEEeccCC-ccCceEEEEcCCCCEEEeeeeeceeeeeeeccce--
Confidence 45689999986 34444566778777766541 12222222 2345788999999988887777777666544432
Q ss_pred EEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEE
Q 001349 891 CVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATI 970 (1094)
Q Consensus 891 ~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~ 970 (1094)
.............++ +.++|+.. ++-..++.+..++........
T Consensus 90 ~~~~~~~~~~p~~ia-------vd~~g~i~----------------------------v~d~~~~~~~~~~~~~~~~~~- 133 (260)
T d1rwia_ 90 TVLPFDGLNYPEGLA-------VDTQGAVY----------------------------VADRGNNRVVKLAAGSKTQTV- 133 (260)
T ss_dssp EECCCCSCCSEEEEE-------ECTTCCEE----------------------------EEEGGGTEEEEECTTCSSCEE-
T ss_pred eeeeeeeeeeccccc-------ccccceeE----------------------------eeccccccccccccccceeee-
Confidence 221111112223333 55555432 222233445555544333211
Q ss_pred eccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEE-ecCCCCEEEEEEeCC-EEE-EEEcCCeEEE
Q 001349 971 QTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGS-LPTLSEVRAMVVSSE-LVY-LGCKGGTVEI 1047 (1094)
Q Consensus 971 ~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~-~~~~~~v~~l~~spd-~l~-sgs~dg~I~v 1047 (1094)
. ...+ ......+++++++.+.++...++ .|..+|......... ...-.....++++++ .|+ +....+.|..
T Consensus 134 ~----~~~~-~~~p~~i~~~~~g~~~v~~~~~~-~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~ 207 (260)
T d1rwia_ 134 L----PFTG-LNDPDGVAVDNSGNVYVTDTDNN-RVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVK 207 (260)
T ss_dssp C----CCCS-CCSCCEEEECTTCCEEEEEGGGT-EEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred e----eecc-cCCcceeeecCCCCEeeeccccc-cccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEE
Confidence 0 0111 23456889998888777766554 899999875443322 234566889999887 444 4455778888
Q ss_pred EECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1048 WDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1048 wd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
++..... ...+....-.....|+++++|.++++-..+++|+.++
T Consensus 208 ~~~~~~~-~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~ 251 (260)
T d1rwia_ 208 LLAGSTT-STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT 251 (260)
T ss_dssp ECTTCSC-CEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred EeCCCCe-EEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEe
Confidence 8876543 2333223334678999999999888877777776554
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.38 E-value=8.5e-05 Score=80.17 Aligned_cols=252 Identities=8% Similarity=0.022 Sum_probs=138.6
Q ss_pred cEEEEEEeCC--EEEEEE-------CCCeEEEEecCCCcceeEEEec--ccCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 001349 815 KVLSIACFRD--KIFSGH-------SDGTIKVWTGRGSILHLIQQIR--EHTKAVTGLAILQSGEMLYSGSLDKTARVWS 883 (1094)
Q Consensus 815 ~V~~l~fspd--~LaSgs-------~Dg~I~vWd~~t~~~~~~~~l~--~H~~~V~sv~fspdg~~LaSgs~DgtI~vWd 883 (1094)
....++|.++ ++++.. .+|+|..||..++......... ...+.-..++|.++|+.++++...+.|..++
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~ 98 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ 98 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEe
Confidence 3456788886 333321 1467999999887422222111 1123357899999999888888777788899
Q ss_pred CCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECC
Q 001349 884 IGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLA 963 (1094)
Q Consensus 884 i~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~ 963 (1094)
.+++............+. ..++.+.|.++|...++.. .+....++..... -..+|.|..++..
T Consensus 99 ~~g~~~~~~~~~~~g~~~----~~pndl~~d~~G~lyvtd~-~~~~~~~~~~~~~------------~~~~G~v~~~~~d 161 (314)
T d1pjxa_ 99 TDGTFEEIAKKDSEGRRM----QGCNDCAFDYEGNLWITAP-AGEVAPADYTRSM------------QEKFGSIYCFTTD 161 (314)
T ss_dssp TTSCEEECCSBCTTSCBC----BCCCEEEECTTSCEEEEEC-BCBCTTSCCCBTT------------SSSCEEEEEECTT
T ss_pred CCCcEEEEEecccccccc----CCCcEEEECCCCCEEEecC-ccCccccccccee------------ccCCceEEEEeec
Confidence 877532211111111111 1234455888887544321 1111101000000 0112334444432
Q ss_pred CCceeEEeccceeecCCCCCeEEEEEeCCcc-----EEEEEECCCCEEEEEECCCC-eEE-----EEec--CCCCEEEEE
Q 001349 964 TGTFATIQTGHRKLLGKANPVHALQVHNGLV-----YTASTSLDGAAVKMWSTSNY-NMV-----GSLP--TLSEVRAMV 1030 (1094)
Q Consensus 964 ~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~-----~las~s~Dg~~I~iwd~~~~-~~~-----~~~~--~~~~v~~l~ 1030 (1094)
++..... ..-...+.++|++++. +.++-+.. +.|..||+... ... ..+. .......++
T Consensus 162 -g~~~~~~-------~~~~~pNGi~~~~d~d~~~~~lyv~d~~~-~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGia 232 (314)
T d1pjxa_ 162 -GQMIQVD-------TAFQFPNGIAVRHMNDGRPYQLIVAETPT-KKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMD 232 (314)
T ss_dssp -SCEEEEE-------EEESSEEEEEEEECTTSCEEEEEEEETTT-TEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEE
T ss_pred -CceeEee-------CCcceeeeeEECCCCCcceeEEEEEeecc-cceEEeeccCccccceeeEEEEccccccccceeeE
Confidence 2222111 1112346788876542 33433334 58888887532 221 1222 123467899
Q ss_pred EeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEE-EEEeCCCcEEEEeC
Q 001349 1031 VSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFL-VIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1031 ~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L-~sgs~DG~I~iWdl 1093 (1094)
++.+ ..++....+.|.+||...++....+. .....+++++|.||++.| +|.+.+|+|...++
T Consensus 233 vD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~-~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~ 297 (314)
T d1pjxa_ 233 FDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR-CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp EBTTCCEEEEEETTTEEEEECTTCBSCSEEEE-CSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred EecCCcEEEEEcCCCEEEEEeCCCCEEEEEEE-CCCCCEEEEEEeCCCCEEEEEECCCCcEEEEEC
Confidence 9887 44445567899999999888777663 344578999999999754 66667788877765
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.37 E-value=8.2e-05 Score=77.52 Aligned_cols=231 Identities=13% Similarity=0.133 Sum_probs=132.7
Q ss_pred eEEEeCC-cceeecccCCCcEEEEEEeCC--EEEEEEC-CC--eEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEE
Q 001349 797 ADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHS-DG--TIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEML 870 (1094)
Q Consensus 797 I~vWd~~-~~~~~~~~h~~~V~~l~fspd--~LaSgs~-Dg--~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~L 870 (1094)
|.|-|.+ .....+..+...+..-+|||| .||-... ++ .+.+.+..++ ....+..+.+......|+|+|+.+
T Consensus 21 l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~spdg~~i 97 (269)
T d2hqsa1 21 LRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG---AVRQVASFPRHNGAPAFSPDGSKL 97 (269)
T ss_dssp EEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC---CEEEEECCSSCEEEEEECTTSSEE
T ss_pred EEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccC---ceeEEeeeecccccceecCCCCee
Confidence 4454555 233444456778899999998 6654433 33 4666677666 334455678888999999999988
Q ss_pred EEEeCC-CcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEE
Q 001349 871 YSGSLD-KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVY 949 (1094)
Q Consensus 871 aSgs~D-gtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~ 949 (1094)
+..+.. +...++...................... .+++++..+ ++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~---------------------------~~ 143 (269)
T d2hqsa1 98 AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEP-------TWFPDSQNL---------------------------AF 143 (269)
T ss_dssp EEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEE-------EECTTSSEE---------------------------EE
T ss_pred eEeeecCCccceeecccccccceeeeecccccccc-------ccccccccc---------------------------ee
Confidence 876642 3333322222111111111111111111 133333332 33
Q ss_pred EEEcCC--eEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEE--ECCCCeEEEEecCCCC
Q 001349 950 CGCQDG--AIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMW--STSNYNMVGSLPTLSE 1025 (1094)
Q Consensus 950 sgs~Dg--~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iw--d~~~~~~~~~~~~~~~ 1025 (1094)
+...+| .|..+++..+... ....+........++|++..++..+.+++...+| |...+. .....+...
T Consensus 144 ~~~~~g~~~i~~~~~~~~~~~-------~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~ 215 (269)
T d2hqsa1 144 TSDQAGRPQVYKVNINGGAPQ-------RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-VQVLSSTFL 215 (269)
T ss_dssp EECTTSSCEEEEEETTSSCCE-------ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC-EEECCCSSS
T ss_pred cccccCCceEeeeecccccce-------eeecccccccccccccccceeEEEeecCCceeeeEeeccccc-ceEeecCcc
Confidence 333444 4555566655432 2233445667788999999888887766555554 444443 344445566
Q ss_pred EEEEEEeCC--EEE-EEEc--CCeEEEEECCCCcEEEEecccCCcceEEEEEcC
Q 001349 1026 VRAMVVSSE--LVY-LGCK--GGTVEIWDQKRQIRIETLQTGTSGKVQCMALDD 1074 (1094)
Q Consensus 1026 v~~l~~spd--~l~-sgs~--dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Sp 1074 (1094)
.....|||| .|+ +... .+.|++|++..+... .+ ....+.+...+|||
T Consensus 216 ~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~-~l-t~~~g~~~~p~WSP 267 (269)
T d2hqsa1 216 DETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA-RL-PATDGQVKFPAWSP 267 (269)
T ss_dssp CEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEE-EC-CCSSSEEEEEEECC
T ss_pred ccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EE-eCCCCcEEeEEeCC
Confidence 678899999 444 3333 346899999877654 44 34566788999998
|
| >d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=9.5e-08 Score=82.67 Aligned_cols=45 Identities=16% Similarity=0.386 Sum_probs=37.2
Q ss_pred eccCccccccC------------------cEEcCCcccccHHhHHHHHHhCCCCCCCCCcCCCC
Q 001349 165 VCPITTHIFDD------------------PVTLETGQTYERRAIQEWIERGNSSCPITRQKLSS 210 (1094)
Q Consensus 165 ~CpIc~~~~~d------------------Pv~~~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~ 210 (1094)
.|+||++-|.+ ++.++|||.|+..||.+|++. +.+||+||+.+..
T Consensus 23 ~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 85 (88)
T d3dplr1 23 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEF 85 (88)
T ss_dssp CCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCCE
T ss_pred cCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHH-CCcCCCCCCcccc
Confidence 48888887766 244699999999999999998 5689999998653
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.37 E-value=2.8e-06 Score=98.57 Aligned_cols=264 Identities=12% Similarity=0.109 Sum_probs=188.9
Q ss_pred cCCchHHHHHHHHHHHhhcccccc-hhhhhccCCCcHHHHHHHHhcC-----hHHHHHHHHhcCCCh-HHH---HHhhhh
Q 001349 324 NSVDPRVLEATIFLLSELGSRDKS-VIHTLTRVESDVERIVALFKKG-----LLEAVVLIDLLRPST-RTL---IEMDMM 393 (1094)
Q Consensus 324 ~s~~~~v~~~av~~L~~l~s~~~~-~~~~i~~~~~~~~~L~~lLk~g-----~~~Aa~~l~~L~~~~-~~~---~~~~~~ 393 (1094)
.|.+...+..++..+.++.+.++. ....+.+ .|.++.|+.+|+.. ..+|+.+|.+|...+ .+. ...|.+
T Consensus 86 ~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~-~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i 164 (503)
T d1wa5b_ 86 NSDDMQEQLSATVKFRQILSREHRPPIDVVIQ-AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAV 164 (503)
T ss_dssp SCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHH-TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH
T ss_pred cCCCHHHHHHHHHHHHHHHhcCCCchHHHHHH-CCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCCh
Confidence 567778888899999988765433 3444553 56799999999875 467899999997644 333 233445
Q ss_pred HHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHHHh
Q 001349 394 ESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCM 473 (1094)
Q Consensus 394 ~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~ 473 (1094)
|.|+.+|.++..+- +..++.+|..|.+ .+.+.+..+...|+++.|+..+...+...+..++.+|..++
T Consensus 165 ~~l~~lL~s~~~~i-------~~~a~~~L~nia~-----~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~ 232 (503)
T d1wa5b_ 165 PLFIQLLYTGSVEV-------KEQAIWALGNVAG-----DSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC 232 (503)
T ss_dssp HHHHHHHHHCCHHH-------HHHHHHHHHHHHT-----TCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCChhH-------HHHHHHHHHHHhh-----hhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHh
Confidence 99999999865332 4556666777632 23577888999999999999999999999999999888888
Q ss_pred hccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCcc
Q 001349 474 QEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQ 553 (1094)
Q Consensus 474 ~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~ 553 (1094)
...............++.++.++.+.+...+..+...|..|...+ ......+-+.|.+.. ++.++....++-
T Consensus 233 ~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~-----~~~~~~~~~~~~~~~---l~~ll~~~~~~v 304 (503)
T d1wa5b_ 233 RGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP-----QEAIQAVIDVRIPKR---LVELLSHESTLV 304 (503)
T ss_dssp CCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC-----HHHHHHHHHTTCHHH---HHHGGGCSCHHH
T ss_pred cCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCC-----chhhhhhhhhhhhhh---hhhcccCCchhh
Confidence 766666666666677888999998888777888888888887542 233444555665544 777777766666
Q ss_pred chhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhccc
Q 001349 554 CPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 609 (1094)
Q Consensus 554 ~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~g 609 (1094)
+.-++..|..+-.-.+.....++..++++.|...|.+. .+.++..++.+|.++..
T Consensus 305 ~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~-~~~i~~~~~~~l~nl~~ 359 (503)
T d1wa5b_ 305 QTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITA 359 (503)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHhh
Confidence 66777777777653332233344456777777777654 55678899999999863
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.36 E-value=1.1e-06 Score=101.23 Aligned_cols=138 Identities=7% Similarity=0.016 Sum_probs=104.1
Q ss_pred EcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEEC---------CCCEEEEEECCCCeEEEEecC
Q 001349 952 CQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSL---------DGAAVKMWSTSNYNMVGSLPT 1022 (1094)
Q Consensus 952 s~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~---------Dg~~I~iwd~~~~~~~~~~~~ 1022 (1094)
..|+.|.+||+.+++....+.. ..+..|...|.++.|+||+.+++..+. ++ .+.+||+.+++......+
T Consensus 33 ~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~-~~~l~d~~~~~~~~l~~~ 110 (470)
T d2bgra1 33 KQENNILVFNAEYGNSSVFLEN-STFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA-SYDIYDLNKRQLITEERI 110 (470)
T ss_dssp ESSSCEEEEETTTCCEEEEECT-TTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEE-EEEEEETTTTEECCSSCC
T ss_pred EcCCcEEEEECCCCCEEEEEch-hhhhhccCccceeEECCCCCEEEEEECCcceeeeccCc-eEEEEECCCCcccccccC
Confidence 4578899999999987755543 466778889999999999999887753 23 788999999886554447
Q ss_pred CCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccC-----------------CcceEEEEEcCCCCEEEEEe
Q 001349 1023 LSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGT-----------------SGKVQCMALDDNEEFLVIGT 1083 (1094)
Q Consensus 1023 ~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h-----------------~~~I~~l~~Spdg~~L~sgs 1083 (1094)
...+..+.|||| .++. ..++.+++|+..+++.......+. .+....+.|||||+.|+...
T Consensus 111 ~~~~~~~~~SPDG~~ia~-~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~ 189 (470)
T d2bgra1 111 PNNTQWVTWSPVGHKLAY-VWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ 189 (470)
T ss_dssp CTTEEEEEECSSTTCEEE-EETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred CccccccccccCcceeeE-eecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeE
Confidence 888999999999 5555 457789999999887665442221 22346688999999999987
Q ss_pred CCCc-EEEEe
Q 001349 1084 SDGR-IQAWG 1092 (1094)
Q Consensus 1084 ~DG~-I~iWd 1092 (1094)
.|.+ |..|.
T Consensus 190 ~d~~~v~~~~ 199 (470)
T d2bgra1 190 FNDTEVPLIE 199 (470)
T ss_dssp EECTTCCEEE
T ss_pred ecCCcCceEE
Confidence 6644 55443
|
| >d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: Variant RING domain domain: IE1B protein (ORF K3), N-terminal domain species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]
Probab=98.36 E-value=1.3e-07 Score=75.34 Aligned_cols=49 Identities=16% Similarity=0.275 Sum_probs=41.7
Q ss_pred CceeccCccccccCcEEcCC-----cccccHHhHHHHHHh-CCCCCCCCCcCCCC
Q 001349 162 KDFVCPITTHIFDDPVTLET-----GQTYERRAIQEWIER-GNSSCPITRQKLSS 210 (1094)
Q Consensus 162 ~~~~CpIc~~~~~dPv~~~c-----Ghtfc~~ci~~~~~~-~~~~CP~c~~~~~~ 210 (1094)
+...|+||++-+.++.+.+| +|.|++.||.+|+.. ++.+||.||+.+..
T Consensus 5 d~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~~ 59 (60)
T d1vyxa_ 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeeec
Confidence 36889999999999988776 499999999999974 45679999998753
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=1.3e-05 Score=89.71 Aligned_cols=319 Identities=13% Similarity=0.087 Sum_probs=192.5
Q ss_pred HHhhhccccchHhHHHHHHHHHHHHHhccc-hHHHHhhchhHHHhhhHhhhccCCchHHHHHHHHHHHhhcccccchhhh
Q 001349 273 ITSLCMSEILNESEMAVLQIERCWLEASME-LDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHT 351 (1094)
Q Consensus 273 i~~L~~s~~l~~~e~a~~~i~~~~~~~~~~-~~~~~~~~~~~v~~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~ 351 (1094)
|+-|. ++..+.+..|+..|..++...+++ ..+...++.|. ++++ ..+.++.+++.++.+|.+|...++.++..
T Consensus 8 v~~L~-~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~----Lv~l-L~~~~~~v~~~a~~aL~~L~~~~~~~~~~ 81 (457)
T d1xm9a1 8 VQYLS-SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICK----LVDL-LRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp HHHHH-SSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHH----HHHH-TTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHH----HHHH-HCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34443 334455677777787777665554 44454455555 4443 45788999999999999997777777777
Q ss_pred hccCCCcHHHHHHHHhcC-----hHHHHHHHHhcCCChH-----------------------------------------
Q 001349 352 LTRVESDVERIVALFKKG-----LLEAVVLIDLLRPSTR----------------------------------------- 385 (1094)
Q Consensus 352 i~~~~~~~~~L~~lLk~g-----~~~Aa~~l~~L~~~~~----------------------------------------- 385 (1094)
|.+ .|.++.|+.+++.. ...|..+|.+|...+.
T Consensus 82 i~~-~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 160 (457)
T d1xm9a1 82 TRR-QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHH-TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHH-CCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHH
Confidence 774 46799999888763 4456666666643221
Q ss_pred ---------------HHHHh----hhhHHHHHHHHhccccccc-------c--ccCc-----------------------
Q 001349 386 ---------------TLIEM----DMMESLMTVIKKKEEDFLK-------M--CLKP----------------------- 414 (1094)
Q Consensus 386 ---------------~~~~~----~~~~~Ll~~l~~~~~~~~~-------~--~~~~----------------------- 414 (1094)
+...+ +.++.|+.++......... + .+..
T Consensus 161 ~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (457)
T d1xm9a1 161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240 (457)
T ss_dssp HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhh
Confidence 11111 1125555555432110000 0 0000
Q ss_pred --hhhHHHHH----------HHHhcCCcccccccchhhhccchhHHHHHHhhhcc-cHHHHHHHHHHHHHHhhccCc---
Q 001349 415 --KSVSVLLL----------GQMIGDSEESIVSSIANTIVSSKVFESVISSLEAE-WAEERIAAVGILLRCMQEDGK--- 478 (1094)
Q Consensus 415 --~~aa~~~l----------~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~l~~~~~~~~~--- 478 (1094)
.......+ .........+.+......+...++++.|+..+... +.+.+..+..++..+......
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 320 (457)
T d1xm9a1 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320 (457)
T ss_dssp -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred hhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchH
Confidence 00000000 00000111344456667778888899999998754 455566666666665544433
Q ss_pred --chhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccch-
Q 001349 479 --CRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCP- 555 (1094)
Q Consensus 479 --~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~- 555 (1094)
.+..+.+.+.+++++.++.+.....+..++..|..|..-+. +. ..|.++ . +..++..|........+
T Consensus 321 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~---~~---~~i~~~-~---i~~li~~L~~~~~~~~~~ 390 (457)
T d1xm9a1 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL---LH---RVMGNQ-V---FPEVTRLLTSHTGNTSNS 390 (457)
T ss_dssp HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG---GH---HHHHHH-T---HHHHHHTTTSCCSCSTTH
T ss_pred HHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChh---HH---HHHHHh-h---HHHHHHHHhccccCcCCc
Confidence 35666677889999999999998889999999998865432 11 223332 2 23356666544443332
Q ss_pred -----hHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhcc
Q 001349 556 -----VVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQ 608 (1094)
Q Consensus 556 -----~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 608 (1094)
.++..|..|-.-....+..+.+.++++.|+..+++.+...+++.|+.+|.+|.
T Consensus 391 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~ 448 (457)
T d1xm9a1 391 EDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 34455655554222335556788999999999999888889999999999985
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.33 E-value=0.00018 Score=76.03 Aligned_cols=225 Identities=11% Similarity=0.130 Sum_probs=134.0
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEE--eCCeEEEEcC
Q 001349 857 AVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHL--RNGKTKLLNS 934 (1094)
Q Consensus 857 ~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~--~~g~i~l~~~ 934 (1094)
.-..|+++++|+++++-..++.|++||.+..-...+... .........+....+.++.....+.. .++.+..++.
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~---~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 100 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGEC---GKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ 100 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCB---SSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEeccc---CCCcccccccccccccccccccceeccCCccccccccc
Confidence 468899999999888877888999999775322222111 11111111222233333333222222 2234444443
Q ss_pred C------------CCceEEEEeC-CEE-EEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEE
Q 001349 935 S------------KYPKCLALVQ-GKV-YCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTS 1000 (1094)
Q Consensus 935 ~------------~~v~~l~~s~-~~l-~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s 1000 (1094)
. .....+++.+ +.+ ++....+.+.+++.. ++.+..+. ...+......+++.+++.+.++..
T Consensus 101 ~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g----~~~~~~~~~~i~~d~~g~i~v~d~ 175 (279)
T d1q7fa_ 101 YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFG----CSKHLEFPNGVVVNDKQEIFISDN 175 (279)
T ss_dssp TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEE----CTTTCSSEEEEEECSSSEEEEEEG
T ss_pred cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeeccc----ccccccccceeeeccceeEEeeec
Confidence 2 2344555543 333 333344556666643 44432221 123456788899998888777766
Q ss_pred CCCCEEEEEECCCCeEEEEecC---CCCEEEEEEeCC-EEEEEE--cCCeEEEEECCCCcEEEEeccc-CCcceEEEEEc
Q 001349 1001 LDGAAVKMWSTSNYNMVGSLPT---LSEVRAMVVSSE-LVYLGC--KGGTVEIWDQKRQIRIETLQTG-TSGKVQCMALD 1073 (1094)
Q Consensus 1001 ~Dg~~I~iwd~~~~~~~~~~~~---~~~v~~l~~spd-~l~sgs--~dg~I~vwd~~t~~~~~~l~~~-h~~~I~~l~~S 1073 (1094)
.. +.|++||. +++.+.++.. ......++++++ .++++. .++.|.+|+. +|+.+.++... .....+.+++.
T Consensus 176 ~~-~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~ 252 (279)
T d1q7fa_ 176 RA-HCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALM 252 (279)
T ss_dssp GG-TEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEE
T ss_pred cc-cceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEe
Confidence 55 49999997 5667777752 345889999888 344443 3457999984 57777776322 23368999999
Q ss_pred CCCCEEEEEeCCCcEEEEeC
Q 001349 1074 DNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1074 pdg~~L~sgs~DG~I~iWdl 1093 (1094)
|||.+++ ++.+++|++|..
T Consensus 253 ~dG~l~V-~~~n~~v~~fr~ 271 (279)
T d1q7fa_ 253 DDGSVVL-ASKDYRLYIYRY 271 (279)
T ss_dssp TTTEEEE-EETTTEEEEEEC
T ss_pred CCCcEEE-EeCCCeEEEEEe
Confidence 9997555 567899999975
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.29 E-value=0.00043 Score=74.59 Aligned_cols=233 Identities=10% Similarity=0.057 Sum_probs=135.9
Q ss_pred CCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCC----CcEEEEECCC
Q 001349 813 NGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD----KTARVWSIGN 886 (1094)
Q Consensus 813 ~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D----gtI~vWdi~~ 886 (1094)
...+..++|.++ +.++-...|.|..||..++ .....+.........++|++||+++++...+ +.+...+..+
T Consensus 39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~--~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~ 116 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETK--EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG 116 (319)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTC--CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred CcCcEeCEECCCCCEEEEECCCCEEEEEECCCC--eEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCC
Confidence 344568899875 6666678899999998887 4444455566678999999999988776443 2344444444
Q ss_pred CceEEEEec-ccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCC
Q 001349 887 EEIHCVQVH-DIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATG 965 (1094)
Q Consensus 887 ~~~~~~~~~-~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~ 965 (1094)
+........ ....... ...+.++|+..+.. ..+.. ....+.+..++...+
T Consensus 117 ~~~~~~~~~~~~~~~~n-------d~~~d~~G~l~vtd-~~~~~---------------------~~~~g~v~~~~~dg~ 167 (319)
T d2dg1a1 117 DNLQDIIEDLSTAYCID-------DMVFDSKGGFYFTD-FRGYS---------------------TNPLGGVYYVSPDFR 167 (319)
T ss_dssp CSCEEEECSSSSCCCEE-------EEEECTTSCEEEEE-CCCBT---------------------TBCCEEEEEECTTSC
T ss_pred ceeeeeccCCCcccCCc-------ceeEEeccceeecc-ccccc---------------------ccCcceeEEEecccc
Confidence 433222211 1111122 33477777643221 11100 001123444444433
Q ss_pred ceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCC-CeEEE----E----ecCCCCEEEEEEeCC--
Q 001349 966 TFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN-YNMVG----S----LPTLSEVRAMVVSSE-- 1034 (1094)
Q Consensus 966 ~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~-~~~~~----~----~~~~~~v~~l~~spd-- 1034 (1094)
...... ..-...+.++|++++..+..+....+.|..||+.. +.... . .........++++.+
T Consensus 168 ~~~~~~-------~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~ 240 (319)
T d2dg1a1 168 TVTPII-------QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN 240 (319)
T ss_dssp CEEEEE-------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC
T ss_pred eeEEEe-------eccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCC
Confidence 322111 11134578999998875544443345999998763 21111 1 112344678999887
Q ss_pred EEEEEEcCCeEEEEECCCCcEEEEecc-----cCCcceEEEEEcCCCCEEEEEeC
Q 001349 1035 LVYLGCKGGTVEIWDQKRQIRIETLQT-----GTSGKVQCMALDDNEEFLVIGTS 1084 (1094)
Q Consensus 1035 ~l~sgs~dg~I~vwd~~t~~~~~~l~~-----~h~~~I~~l~~Spdg~~L~sgs~ 1084 (1094)
+.++....+.|.+||. .|+.+..+.. ++...+++++|.+++..+++.+.
T Consensus 241 l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 241 LYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp EEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred EEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence 4455567899999996 6888877742 34446889999998877766554
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=1.3e-06 Score=92.42 Aligned_cols=180 Identities=17% Similarity=0.113 Sum_probs=140.4
Q ss_pred hhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHH-hhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHH
Q 001349 415 KSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVIS-SLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVM 493 (1094)
Q Consensus 415 ~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~ 493 (1094)
+.+|+..|..|. .+..|+..+.+.||++.|+. ++..++.+-|..|+.+|..+.+.+..++..+...+.+++++
T Consensus 34 ~~~Al~~L~~L~------~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv 107 (264)
T d1xqra1 34 REGALELLADLC------ENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL 107 (264)
T ss_dssp HHHHHHHHHHHH------TSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHH------cCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence 345666666663 34467888999999998886 78889999999999999999999999999999999999999
Q ss_pred HHHHhc-CCchhHHHHHHHHHHHhccccchhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCC
Q 001349 494 ESFMAA-SDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRK 572 (1094)
Q Consensus 494 ~l~~~~-~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~ 572 (1094)
.+|.+. ....+..++..|..+...++ .....+.+.|++.. |+.++++..++-+--++.+|..|-.-.+..+
T Consensus 108 ~lL~~~~~~~v~~~a~~aL~~l~~~~~-----~~~~~~~~~~gi~~---L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 179 (264)
T d1xqra1 108 RLLDRDACDTVRVKALFAISCLVREQE-----AGLLQFLRLDGFSV---LMRAMQQQVQKLKVKSAFLLQNLLVGHPEHK 179 (264)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTTCH-----HHHHHHHHTTHHHH---HHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHhhcCCCHHHHHHHHHHHHHHhccch-----hhHHHHHHhhhhhH---HHHHHhcCchHHHHHHHHHHHHHHhccHHHH
Confidence 999765 45567888999998876633 23345566777766 7888888888888888888888755333344
Q ss_pred CCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhccc
Q 001349 573 MSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQG 609 (1094)
Q Consensus 573 ~~~~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l~g 609 (1094)
..+..+++++.|+..|.+.+ +.+|+.|+.+|.+|..
T Consensus 180 ~~~~~~~~v~~L~~lL~~~~-~~~~~~a~~aL~~L~~ 215 (264)
T d1xqra1 180 GTLCSMGMVQQLVALVRTEH-SPFHEHVLGALCSLVT 215 (264)
T ss_dssp HHHHHTTHHHHHHHHHTSCC-STHHHHHHHHHHHHHT
T ss_pred HHHHHhhhHHHHHHHHcCCC-HHHHHHHHHHHHHHHh
Confidence 45555668999999997654 5679999999999873
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.05 E-value=0.00031 Score=77.33 Aligned_cols=241 Identities=9% Similarity=0.032 Sum_probs=131.5
Q ss_pred cCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEE-ecccCCCeEEEEEecCCCEEEE--Ee-CCCcEEEEEC
Q 001349 811 SENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQ-IREHTKAVTGLAILQSGEMLYS--GS-LDKTARVWSI 884 (1094)
Q Consensus 811 ~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~-l~~H~~~V~sv~fspdg~~LaS--gs-~DgtI~vWdi 884 (1094)
.+...+..|+|+++ +|++... +.+..|.+.... ..... ..........+.++++++.++. +. ..++|..+.+
T Consensus 37 ~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~-~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~ 114 (365)
T d1jofa_ 37 PQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPT-EIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp CTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETT-EEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred cCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCC-CeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEc
Confidence 34556677999987 6666654 567788765431 11111 1122334567788888885433 22 2456666554
Q ss_pred CCCc--eEEEEecc---cCccceeee----ecCceEEEeeCCCeEEEEEeC-CeEEEEcC-----------------CCC
Q 001349 885 GNEE--IHCVQVHD---IKDQIQNLA----VSNSILCFIPQGAGIKVHLRN-GKTKLLNS-----------------SKY 937 (1094)
Q Consensus 885 ~~~~--~~~~~~~~---~~~~V~~v~----~~~~~~~fspdg~~l~~~~~~-g~i~l~~~-----------------~~~ 937 (1094)
.... ........ ....+.... .....+.|+|||+++.+.... ..+.+++. ...
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~g 194 (365)
T d1jofa_ 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDH 194 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCC
T ss_pred cCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCc
Confidence 3211 11111100 000000000 011235599999988877654 45555431 345
Q ss_pred ceEEEEeCC--EE-EEEEcCCeEEEEECCCCceeEEeccce-e------------ecCCCCCeEEEEEeCCccEEEEEEC
Q 001349 938 PKCLALVQG--KV-YCGCQDGAIQEIDLATGTFATIQTGHR-K------------LLGKANPVHALQVHNGLVYTASTSL 1001 (1094)
Q Consensus 938 v~~l~~s~~--~l-~sgs~Dg~I~iwDl~~~~~~~~~~~~~-~------------~~~h~~~V~sl~fs~~~~~las~s~ 1001 (1094)
.+.+.|+++ .+ ++...+++|.+||+..+.......... . ...+......+.++|++.++.++..
T Consensus 195 Pr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr 274 (365)
T d1jofa_ 195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred eEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcc
Confidence 677888763 34 455568899999987765432211100 0 0112233567889999998877643
Q ss_pred CC-----CEEEEEECCCCeEEE-E------ecCCCCEEEEEEeC-C--EEEEE-EcCCeEEEEECCCC
Q 001349 1002 DG-----AAVKMWSTSNYNMVG-S------LPTLSEVRAMVVSS-E--LVYLG-CKGGTVEIWDQKRQ 1053 (1094)
Q Consensus 1002 Dg-----~~I~iwd~~~~~~~~-~------~~~~~~v~~l~~sp-d--~l~sg-s~dg~I~vwd~~t~ 1053 (1094)
.. ..|..|++.....+. . ...+.....++++| + +++++ ..++.|.||++...
T Consensus 275 ~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 275 ANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred cCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 21 147777775432221 1 11345677899987 3 56555 57799999987544
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.95 E-value=0.0012 Score=70.87 Aligned_cols=235 Identities=7% Similarity=0.019 Sum_probs=129.6
Q ss_pred cccccCcEEEEeeC-------CCCeEEEeCCccee-ecc-----cCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCc
Q 001349 780 PLAFEMVKVLSNGH-------DSSADFWNHRELVH-VDS-----SENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI 844 (1094)
Q Consensus 780 ~~~~d~~~l~s~s~-------dg~I~vWd~~~~~~-~~~-----~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~ 844 (1094)
.+.++|+..++... +|.|..||...... ... ...+....++|.++ .+++++..+.|...|..++.
T Consensus 24 a~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~ 103 (314)
T d1pjxa_ 24 VFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTF 103 (314)
T ss_dssp EECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETTSCE
T ss_pred EEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCCCcE
Confidence 35567775554322 46677788763221 111 11234678999986 78888877888889987762
Q ss_pred ceeEEEec-ccC----CCeEEEEEecCCCEEEEEeC---------------CCcEEEEECCCCceEEEEecccCccceee
Q 001349 845 LHLIQQIR-EHT----KAVTGLAILQSGEMLYSGSL---------------DKTARVWSIGNEEIHCVQVHDIKDQIQNL 904 (1094)
Q Consensus 845 ~~~~~~l~-~H~----~~V~sv~fspdg~~LaSgs~---------------DgtI~vWdi~~~~~~~~~~~~~~~~V~~v 904 (1094)
...+. ... ...+.++|.++|++.+|-.. +|.|..++.+. +...... .
T Consensus 104 ---~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~~~~--------~- 170 (314)
T d1pjxa_ 104 ---EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVDT--------A- 170 (314)
T ss_dssp ---EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEEEEE--------E-
T ss_pred ---EEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ceeEeeC--------C-
Confidence 11111 111 13578999999988776432 11222222221 1111000 0
Q ss_pred eecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEE-EEEEcCCeEEEEECCCCceeEEeccceeecC-CCC
Q 001349 905 AVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKV-YCGCQDGAIQEIDLATGTFATIQTGHRKLLG-KAN 982 (1094)
Q Consensus 905 ~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l-~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~-h~~ 982 (1094)
...++.++|+|++... ...+ ++-+..+.|..||+.....+........+.+ +..
T Consensus 171 ~~~pNGi~~~~d~d~~------------------------~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~ 226 (314)
T d1pjxa_ 171 FQFPNGIAVRHMNDGR------------------------PYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEG 226 (314)
T ss_dssp ESSEEEEEEEECTTSC------------------------EEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSC
T ss_pred cceeeeeEECCCCCcc------------------------eeEEEEEeecccceEEeeccCccccceeeEEEEccccccc
Confidence 0111223355443200 0023 3335567777777654333221110011111 122
Q ss_pred CeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC---EEEEEEcCCeEEEEECCC
Q 001349 983 PVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE---LVYLGCKGGTVEIWDQKR 1052 (1094)
Q Consensus 983 ~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd---~l~sgs~dg~I~vwd~~t 1052 (1094)
....+++..++.+.++....+ .|.+||...+.....+. ....+++++|.|| .+++.+.+|.|..+++..
T Consensus 227 ~pdGiavD~~GnlyVa~~~~g-~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 227 GADGMDFDEDNNLLVANWGSS-HIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEEEEBTTCCEEEEEETTT-EEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred cceeeEEecCCcEEEEEcCCC-EEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence 356799998888766665554 89999998887777666 3567899999987 445556778888888653
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.92 E-value=0.00087 Score=69.50 Aligned_cols=231 Identities=10% Similarity=0.048 Sum_probs=118.6
Q ss_pred CCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeC-CC-----cEEEEECCCCceEEEEecc
Q 001349 823 RDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSL-DK-----TARVWSIGNEEIHCVQVHD 896 (1094)
Q Consensus 823 pd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~-Dg-----tI~vWdi~~~~~~~~~~~~ 896 (1094)
.+.++-. .+|.|.+.|+.++. .+.+..+.+.+....|||||+.||-.+. ++ .|.+++..+++...+...
T Consensus 12 G~~v~f~-~~~dl~~~d~~~g~---~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~- 86 (281)
T d1k32a2 12 GDRIIFV-CCDDLWEHDLKSGS---TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYF- 86 (281)
T ss_dssp TTEEEEE-ETTEEEEEETTTCC---EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCC-
T ss_pred CCEEEEE-eCCcEEEEECCCCC---EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeec-
Confidence 4444433 34678888999883 3455667788899999999999886542 22 377778888754433222
Q ss_pred cCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEecccee
Q 001349 897 IKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRK 976 (1094)
Q Consensus 897 ~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~ 976 (1094)
...............|+|+|+.++........ .....+..++...+....
T Consensus 87 -~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~------- 136 (281)
T d1k32a2 87 -SGKSTGRRMFTDVAGFDPDGNLIISTDAMQPF----------------------SSMTCLYRVENDGINFVP------- 136 (281)
T ss_dssp -CEEEETTEECSEEEEECTTCCEEEEECTTSSS----------------------TTCCEEEEEEGGGTEEEE-------
T ss_pred -CCCccCccccccccccCCCCCEEEEEEccCCC----------------------ccceeeeeecCCCceeEE-------
Confidence 11111111222344589999877654322100 001112223333222211
Q ss_pred ecCCCCCeEEEEEeCCccEEEEEECCC----------CEEEEEECCCCeEEEEecCCCCEEEEEEeCCEEEEEEc---CC
Q 001349 977 LLGKANPVHALQVHNGLVYTASTSLDG----------AAVKMWSTSNYNMVGSLPTLSEVRAMVVSSELVYLGCK---GG 1043 (1094)
Q Consensus 977 ~~~h~~~V~sl~fs~~~~~las~s~Dg----------~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd~l~sgs~---dg 1043 (1094)
.+........+.+++.++.....+. .....+.....................++++.++.... ..
T Consensus 137 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (281)
T d1k32a2 137 --LNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFG 214 (281)
T ss_dssp --CCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSC
T ss_pred --ecCCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeeccccceeccccccc
Confidence 0111122223333333333222111 01222222233333333345556667778885554442 34
Q ss_pred eEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001349 1044 TVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGLS 1094 (1094)
Q Consensus 1044 ~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdls 1094 (1094)
.|+++|+.++... .+....... ...|||||+.|+.. .+|.|+++|+.
T Consensus 215 ~l~~~d~~g~~~~-~lt~~~~~~--~~~~SpDG~~I~f~-~~~~l~~~d~~ 261 (281)
T d1k32a2 215 QIYSTDLDGKDLR-KHTSFTDYY--PRHLNTDGRRILFS-KGGSIYIFNPD 261 (281)
T ss_dssp EEEEEETTSCSCE-ECCCCCSSC--EEEEEESSSCEEEE-ETTEEEEECTT
T ss_pred ceEEEeCCCCceE-EeecCCCcc--cccCcCCCCEEEEE-eCCEEEEEECC
Confidence 6888898877643 332222222 34689999988764 47888888863
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=0.00013 Score=83.15 Aligned_cols=295 Identities=9% Similarity=0.024 Sum_probs=159.4
Q ss_pred ccCcEEEEeeCCCCeEEEeCCcce--eeccc---CCCcEEEEEEeCC--EEEEE---------ECCCeEEEEecCCCcce
Q 001349 783 FEMVKVLSNGHDSSADFWNHRELV--HVDSS---ENGKVLSIACFRD--KIFSG---------HSDGTIKVWTGRGSILH 846 (1094)
Q Consensus 783 ~d~~~l~s~s~dg~I~vWd~~~~~--~~~~~---h~~~V~~l~fspd--~LaSg---------s~Dg~I~vWd~~t~~~~ 846 (1094)
.++.++ .-..+|.|.+||..+.. ..+.. ..-.+....|||| +++.+ +..|.+.++|+.++...
T Consensus 26 ~~~~~~-~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~ 104 (465)
T d1xfda1 26 SDTEFI-YREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ 104 (465)
T ss_dssp SSSCBC-CCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE
T ss_pred CCCcEE-EEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCcee
Confidence 344443 34567889999987321 11222 2346677889997 54444 34678999999998544
Q ss_pred eEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeee----------ecCceEEEeeC
Q 001349 847 LIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLA----------VSNSILCFIPQ 916 (1094)
Q Consensus 847 ~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~----------~~~~~~~fspd 916 (1094)
.+.......+.+....|||||+.||-.. ++.|.+.+..++....+........+..-. -......||||
T Consensus 105 ~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPD 183 (465)
T d1xfda1 105 SLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPD 183 (465)
T ss_dssp ECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTT
T ss_pred eccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCC
Confidence 4443344455667789999999998776 567888888776533333322222221110 11224558999
Q ss_pred CCeEEEEEeC-CeEEEEc---CC----CCceEEEEeCCEEEEEEc--CCeEEEEECCCCceeEEeccceeecCCCCCeEE
Q 001349 917 GAGIKVHLRN-GKTKLLN---SS----KYPKCLALVQGKVYCGCQ--DGAIQEIDLATGTFATIQTGHRKLLGKANPVHA 986 (1094)
Q Consensus 917 g~~l~~~~~~-g~i~l~~---~~----~~v~~l~~s~~~l~sgs~--Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~s 986 (1094)
|+.|+....| ..+..+. .. ..+..+.+.. .|.. ...+.++|+.++.................-+..
T Consensus 184 gk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~----~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~ 259 (465)
T d1xfda1 184 GTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK----AGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITM 259 (465)
T ss_dssp SSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB----TTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEE
T ss_pred CCeEEEEEecccccceeecccccccccceeeeeeccc----cCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeee
Confidence 9999987655 2222221 11 1223333220 1111 125778898776543222211112222334678
Q ss_pred EEEeCCccEEEEEEC-CC--CEEEEEECCCCeEEEEec--CCCCE----EEEEEeCC---E-EEEEE-cCC--eEEEEEC
Q 001349 987 LQVHNGLVYTASTSL-DG--AAVKMWSTSNYNMVGSLP--TLSEV----RAMVVSSE---L-VYLGC-KGG--TVEIWDQ 1050 (1094)
Q Consensus 987 l~fs~~~~~las~s~-Dg--~~I~iwd~~~~~~~~~~~--~~~~v----~~l~~spd---~-l~sgs-~dg--~I~vwd~ 1050 (1094)
+.|.+++.+++.... +. ..+.++|..++++...+. ....| ....|++| + ++..+ .+| .++..++
T Consensus 260 ~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~ 339 (465)
T d1xfda1 260 VKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITV 339 (465)
T ss_dssp EEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEE
T ss_pred eEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEe
Confidence 899988877666532 22 268889999987765544 22222 23567776 2 22222 222 3333332
Q ss_pred C------CCcEEEEecccCCcceEEE-EEcCCCCEEE-EEeC
Q 001349 1051 K------RQIRIETLQTGTSGKVQCM-ALDDNEEFLV-IGTS 1084 (1094)
Q Consensus 1051 ~------t~~~~~~l~~~h~~~I~~l-~~Spdg~~L~-sgs~ 1084 (1094)
. .++.+..+..| .-.|..+ .|+++++.|+ ++..
T Consensus 340 ~~~~~~~~~~~~~~LT~G-~w~V~~i~~~d~~~~~vyF~a~~ 380 (465)
T d1xfda1 340 SSSQPNSSNDNIQSITSG-DWDVTKILAYDEKGNKIYFLSTE 380 (465)
T ss_dssp ECSSCCSSSCCCCBSCCS-SSCEEEEEEEETTTTEEEEEESS
T ss_pred ccccccCCCceeEEeccC-CceEEEEEEEcCCCCEEEEEEeC
Confidence 1 23333344222 2245554 6888777664 4443
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.89 E-value=7.2e-05 Score=83.28 Aligned_cols=279 Identities=12% Similarity=0.092 Sum_probs=150.2
Q ss_pred hHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCC-ChHHHH---H
Q 001349 318 FVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRP-STRTLI---E 389 (1094)
Q Consensus 318 ~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~-~~~~~~---~ 389 (1094)
+|..| .+.++.++..|...|.++...++.++..|.+ .|+++.|+.+|+.+ ...|+.+|.+|.. .++++. .
T Consensus 7 lv~~L-~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~ 84 (457)
T d1xm9a1 7 AVQYL-SSQDEKYQAIGAYYIQHTCFQDESAKQQVYQ-LGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRR 84 (457)
T ss_dssp HHHHH-HSSCTHHHHHHHHHHHHHTSSCSSHHHHHHH-TTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHh-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444 5788999999999999998777778888774 56899999999987 5567778999964 454443 3
Q ss_pred hhhhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhh---------------
Q 001349 390 MDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSL--------------- 454 (1094)
Q Consensus 390 ~~~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l--------------- 454 (1094)
.+.++.|+..+........ +..+..++..|... ......... .+++.++..+
T Consensus 85 ~g~v~~li~~l~~~~~~~~------~~~a~~~l~~l~~~------~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~ 151 (457)
T d1xm9a1 85 QNGIREAVSLLRRTGNAEI------QKQLTGLLWNLSST------DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMS 151 (457)
T ss_dssp TTCHHHHHHHHTTCCCHHH------HHHHHHHHHHHHTS------SSTHHHHHH-HHHHHHHHHTTHHHHTCC-------
T ss_pred CCChHHHHHHHhccCcHHH------HHHHHHHHHHHHhh------hhhHHHHHh-cccHHHHHHHHhhhhhhhcchhhhh
Confidence 4456999998876432211 34455556655332 233333333 3334443333
Q ss_pred -hcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCch------hHHHHHHHHHHHhccccchhHHHH
Q 001349 455 -EAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGE------RFEIVCFLSELVKLNRRTFNEQIL 527 (1094)
Q Consensus 455 -~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~l~el~~~~r~~~~~~~l 527 (1094)
+..+.+-+..++..|..+...+...+..+...+.++.++.++++..... ...++..+.......+........
T Consensus 152 ~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 231 (457)
T d1xm9a1 152 REVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYR 231 (457)
T ss_dssp --CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHH
T ss_pred cccccHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 3345566777777777666555555555556677888988877532211 112233333222111100000000
Q ss_pred HHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhc
Q 001349 528 HIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSL 607 (1094)
Q Consensus 528 ~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~~~~~~~~~~~~~~~l 607 (1094)
..+..............++...........+...+....-........+..+++..++..+.......+++.++.++.++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l 311 (457)
T d1xm9a1 232 QLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNL 311 (457)
T ss_dssp HHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 00111111111111111221111111111122222222223334555667889999999999888888899999999988
Q ss_pred cccc
Q 001349 608 QGRF 611 (1094)
Q Consensus 608 ~g~~ 611 (1094)
....
T Consensus 312 ~~~~ 315 (457)
T d1xm9a1 312 TASK 315 (457)
T ss_dssp TTCS
T ss_pred hhcc
Confidence 7543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.88 E-value=0.00082 Score=69.82 Aligned_cols=224 Identities=9% Similarity=0.049 Sum_probs=124.1
Q ss_pred cccccCcEEEE-eeCCCCeEEEeCCcceeecc--cCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEeccc
Q 001349 780 PLAFEMVKVLS-NGHDSSADFWNHRELVHVDS--SENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREH 854 (1094)
Q Consensus 780 ~~~~d~~~l~s-~s~dg~I~vWd~~~~~~~~~--~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H 854 (1094)
.+..+|...++ .+..+.+..++......... .-......++++++ ++++....+.+++++-.+. ..+... ..
T Consensus 20 avd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~--~~~~~~-~~ 96 (260)
T d1rwia_ 20 AVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNN--QTVLPF-DG 96 (260)
T ss_dssp EECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSC--CEECCC-CS
T ss_pred EEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccc--eeeeee-ee
Confidence 35556774444 45557777776653222211 21234577888886 5555555666666655444 333322 23
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcC
Q 001349 855 TKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNS 934 (1094)
Q Consensus 855 ~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~ 934 (1094)
......+++.++|+++++-..+..+..++............. ..... .+++.++|+.
T Consensus 97 ~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~-------~i~~~~~g~~--------------- 153 (260)
T d1rwia_ 97 LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG-LNDPD-------GVAVDNSGNV--------------- 153 (260)
T ss_dssp CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCS-CCSCC-------EEEECTTCCE---------------
T ss_pred eeecccccccccceeEeeccccccccccccccceeeeeeecc-cCCcc-------eeeecCCCCE---------------
Confidence 356789999999998887766777777776654321111111 11112 2335555542
Q ss_pred CCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCC
Q 001349 935 SKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY 1014 (1094)
Q Consensus 935 ~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~ 1014 (1094)
+++...++.|..+|......... ..........+++++++.+.++....+ .|..++....
T Consensus 154 -------------~v~~~~~~~i~~~d~~~~~~~~~------~~~~~~~p~gi~~d~~g~l~vsd~~~~-~i~~~~~~~~ 213 (260)
T d1rwia_ 154 -------------YVTDTDNNRVVKLEAESNNQVVL------PFTDITAPWGIAVDEAGTVYVTEHNTN-QVVKLLAGST 213 (260)
T ss_dssp -------------EEEEGGGTEEEEECTTTCCEEEC------CCSSCCSEEEEEECTTCCEEEEETTTT-EEEEECTTCS
T ss_pred -------------eeeccccccccccccccceeeee------eccccCCCccceeeeeeeeeeeecCCC-EEEEEeCCCC
Confidence 34445566778888765443311 112334568899999888777765554 7887876543
Q ss_pred eEEEEec--CCCCEEEEEEeCC-EEEEE-EcCCeEEEEEC
Q 001349 1015 NMVGSLP--TLSEVRAMVVSSE-LVYLG-CKGGTVEIWDQ 1050 (1094)
Q Consensus 1015 ~~~~~~~--~~~~v~~l~~spd-~l~sg-s~dg~I~vwd~ 1050 (1094)
. ...+. .-.....|+++++ .|+.+ ..++.|+.++.
T Consensus 214 ~-~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 214 T-STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS 252 (260)
T ss_dssp C-CEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred e-EEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence 2 22232 3356788999886 33333 44565655443
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.83 E-value=0.014 Score=61.28 Aligned_cols=222 Identities=9% Similarity=-0.017 Sum_probs=131.1
Q ss_pred EEEEeCC---EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 001349 818 SIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVWSIGNEEIHCVQV 894 (1094)
Q Consensus 818 ~l~fspd---~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~DgtI~vWdi~~~~~~~~~~ 894 (1094)
+..|++. +.++--..+.|.-||..++. ...+ .....+.++++.++|.++++ +.+| +.++|..+++...+..
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~---~~~~-~~~~~~~~i~~~~dg~l~va-~~~g-l~~~d~~tg~~~~l~~ 95 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGR---KTVH-ALPFMGSALAKISDSKQLIA-SDDG-LFLRDTATGVLTLHAE 95 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTE---EEEE-ECSSCEEEEEEEETTEEEEE-ETTE-EEEEETTTCCEEEEEC
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCe---EEEE-ECCCCcEEEEEecCCCEEEE-EeCc-cEEeecccceeeEEee
Confidence 3457652 44454567899999999883 2223 23457889999999877765 4554 8899999987555443
Q ss_pred cccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEeccc
Q 001349 895 HDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTGH 974 (1094)
Q Consensus 895 ~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~ 974 (1094)
.....+-.. .+...+.|+|+..+....... ..+.-.+|.+..++......
T Consensus 96 ~~~~~~~~~----~nd~~vd~~G~iw~~~~~~~~------------------------~~~~g~l~~~~~g~~~~~~~-- 145 (295)
T d2ghsa1 96 LESDLPGNR----SNDGRMHPSGALWIGTMGRKA------------------------ETGAGSIYHVAKGKVTKLFA-- 145 (295)
T ss_dssp SSTTCTTEE----EEEEEECTTSCEEEEEEETTC------------------------CTTCEEEEEEETTEEEEEEE--
T ss_pred eecCCCccc----ceeeEECCCCCEEEEeccccc------------------------cccceeEeeecCCcEEEEee--
Confidence 322221111 112336777764333221110 11223344444454332211
Q ss_pred eeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCC------CeEE--EEec-CCCCEEEEEEeCC-EEEEEE-cCC
Q 001349 975 RKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN------YNMV--GSLP-TLSEVRAMVVSSE-LVYLGC-KGG 1043 (1094)
Q Consensus 975 ~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~------~~~~--~~~~-~~~~v~~l~~spd-~l~sgs-~dg 1043 (1094)
.-...+.+.|++++..+.......+.|..|++.. ++.. ..+. .......++++.+ .++++. ..+
T Consensus 146 -----~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g 220 (295)
T d2ghsa1 146 -----DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEG 220 (295)
T ss_dssp -----EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTT
T ss_pred -----ccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCC
Confidence 1134578899998876655555556898888742 1111 1122 3456788999887 555554 567
Q ss_pred eEEEEECCCCcEEEEecccCCcceEEEEEc-CCCCEEEEE
Q 001349 1044 TVEIWDQKRQIRIETLQTGTSGKVQCMALD-DNEEFLVIG 1082 (1094)
Q Consensus 1044 ~I~vwd~~t~~~~~~l~~~h~~~I~~l~~S-pdg~~L~sg 1082 (1094)
.|..||. .|+.+..+.. ....+++++|- +|.+.|+..
T Consensus 221 ~V~~~dp-~G~~~~~i~l-P~~~~T~~~FGG~d~~~LyvT 258 (295)
T d2ghsa1 221 AVDRYDT-DGNHIARYEV-PGKQTTCPAFIGPDASRLLVT 258 (295)
T ss_dssp EEEEECT-TCCEEEEEEC-SCSBEEEEEEESTTSCEEEEE
T ss_pred ceEEecC-CCcEeeEecC-CCCceEEEEEeCCCCCEEEEE
Confidence 8999995 6888888853 23468999995 676666543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=0.00032 Score=79.90 Aligned_cols=96 Identities=9% Similarity=0.157 Sum_probs=59.7
Q ss_pred EECCCeEEEEecCCCcceeEEEecc-cCCCeEEEEEecCCCEEEEEe---------CCCcEEEEECCCCceEEEEeccc-
Q 001349 829 GHSDGTIKVWTGRGSILHLIQQIRE-HTKAVTGLAILQSGEMLYSGS---------LDKTARVWSIGNEEIHCVQVHDI- 897 (1094)
Q Consensus 829 gs~Dg~I~vWd~~t~~~~~~~~l~~-H~~~V~sv~fspdg~~LaSgs---------~DgtI~vWdi~~~~~~~~~~~~~- 897 (1094)
-..+|.|.+||+.++....+..... ..-.+....|||||++++... ..+.+.++|+.++....+.....
T Consensus 33 ~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~ 112 (465)
T d1xfda1 33 REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVS 112 (465)
T ss_dssp CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCC
T ss_pred EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCC
Confidence 3567889999999884333322211 223577888999999988764 35678899999886544432221
Q ss_pred CccceeeeecCceEEEeeCCCeEEEEEeCCeEEEE
Q 001349 898 KDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLL 932 (1094)
Q Consensus 898 ~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~ 932 (1094)
...+.... |||||+.++... ++.+.+.
T Consensus 113 ~~~l~~~~-------wSPDG~~iafv~-~~nl~~~ 139 (465)
T d1xfda1 113 NAKLQYAG-------WGPKGQQLIFIF-ENNIYYC 139 (465)
T ss_dssp SCCCSBCC-------BCSSTTCEEEEE-TTEEEEE
T ss_pred ccccceee-------eccCCceEEEEe-cceEEEE
Confidence 12222233 999999876543 3334333
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.70 E-value=0.011 Score=63.11 Aligned_cols=215 Identities=9% Similarity=0.000 Sum_probs=120.7
Q ss_pred cccccCcEEEEeeCCCCeEEEeCCc--ceeecccCCCcEEEEEEeCC--EEEEEEC----CCeEEEEecCCCcceeEEEe
Q 001349 780 PLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRD--KIFSGHS----DGTIKVWTGRGSILHLIQQI 851 (1094)
Q Consensus 780 ~~~~d~~~l~s~s~dg~I~vWd~~~--~~~~~~~h~~~V~~l~fspd--~LaSgs~----Dg~I~vWd~~t~~~~~~~~l 851 (1094)
.+..+|+..++-...+.|..|+... ..............++|++| ++++... .+.|...+..++. .....
T Consensus 46 ~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~--~~~~~ 123 (319)
T d2dg1a1 46 NFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN--LQDII 123 (319)
T ss_dssp EECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS--CEEEE
T ss_pred EECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCce--eeeec
Confidence 3456787777777788888888763 23444455667899999987 4444332 2345555555552 22222
Q ss_pred cc--cCCCeEEEEEecCCCEEEEEeCC------CcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEE
Q 001349 852 RE--HTKAVTGLAILQSGEMLYSGSLD------KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVH 923 (1094)
Q Consensus 852 ~~--H~~~V~sv~fspdg~~LaSgs~D------gtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~ 923 (1094)
.. -....+.+++.++|++.++.... +.+..++.+.+....+.. .+ ..++.++|+|+++.+
T Consensus 124 ~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~--------~~-~~pnGia~s~dg~~l--- 191 (319)
T d2dg1a1 124 EDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--------NI-SVANGIALSTDEKVL--- 191 (319)
T ss_dssp CSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE--------EE-SSEEEEEECTTSSEE---
T ss_pred cCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEee--------cc-ceeeeeeeccccceE---
Confidence 21 12357889999999877664321 223334433332221110 00 112334466666643
Q ss_pred EeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCCCc-eeEEeccc-eeecCCCCCeEEEEEeCCccEEEEEEC
Q 001349 924 LRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLATGT-FATIQTGH-RKLLGKANPVHALQVHNGLVYTASTSL 1001 (1094)
Q Consensus 924 ~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~-~~~~~~~~-~~~~~h~~~V~sl~fs~~~~~las~s~ 1001 (1094)
.++-+..+.|..||+.... ........ ............++++.++.+.++...
T Consensus 192 ------------------------yvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~ 247 (319)
T d2dg1a1 192 ------------------------WVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG 247 (319)
T ss_dssp ------------------------EEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET
T ss_pred ------------------------EEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcC
Confidence 2333456778888775432 11111100 011111123567999988887777665
Q ss_pred CCCEEEEEECCCCeEEEEecC-------CCCEEEEEEeCC
Q 001349 1002 DGAAVKMWSTSNYNMVGSLPT-------LSEVRAMVVSSE 1034 (1094)
Q Consensus 1002 Dg~~I~iwd~~~~~~~~~~~~-------~~~v~~l~~spd 1034 (1094)
.+ .|.+||. .|+.+..+.- ...+++++|.++
T Consensus 248 ~g-~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~ 285 (319)
T d2dg1a1 248 QG-RVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPG 285 (319)
T ss_dssp TT-EEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred CC-EEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCC
Confidence 54 9999995 6888887752 235778999876
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.69 E-value=0.006 Score=64.40 Aligned_cols=211 Identities=9% Similarity=0.032 Sum_probs=125.6
Q ss_pred cCcEEEEeeCCCCeEEEeCCcceeecccCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEeccc--CCCeEE
Q 001349 784 EMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREH--TKAVTG 860 (1094)
Q Consensus 784 d~~~l~s~s~dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H--~~~V~s 860 (1094)
++....+--..+.|.-||..+...........+.++++.++ .++.++.+ -|.++|..+++...+...... ...++.
T Consensus 29 ~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd 107 (295)
T d2ghsa1 29 SGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSND 107 (295)
T ss_dssp TTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEE
T ss_pred CCEEEEEECCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCEEEEEeC-ccEEeecccceeeEEeeeecCCCccccee
Confidence 34444554556788888877544333344567889998876 56666665 488899999854444333222 235789
Q ss_pred EEEecCCCEEEEEeCC----CcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCC
Q 001349 861 LAILQSGEMLYSGSLD----KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSK 936 (1094)
Q Consensus 861 v~fspdg~~LaSgs~D----gtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~ 936 (1094)
+.+.|+|++.++...+ +.-.+|.+..++...+... + ..++.++|+++++.+
T Consensus 108 ~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~--------~-~~~Ng~~~s~d~~~l---------------- 162 (295)
T d2ghsa1 108 GRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD--------I-SIPNSICFSPDGTTG---------------- 162 (295)
T ss_dssp EEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE--------E-SSEEEEEECTTSCEE----------------
T ss_pred eEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec--------c-CCcceeeecCCCceE----------------
Confidence 9999999977765432 2345666655543222211 1 112334477777653
Q ss_pred CceEEEEeCCEEEEEEcCCeEEEEECCCCceeEEecc--ceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCC
Q 001349 937 YPKCLALVQGKVYCGCQDGAIQEIDLATGTFATIQTG--HRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNY 1014 (1094)
Q Consensus 937 ~v~~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~--~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~ 1014 (1094)
+++-+..+.|..|++........-.. .....+.......++++.++.+.++.-.. +.|..||. ++
T Consensus 163 -----------~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~-g~V~~~dp-~G 229 (295)
T d2ghsa1 163 -----------YFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE-GAVDRYDT-DG 229 (295)
T ss_dssp -----------EEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETT-TEEEEECT-TC
T ss_pred -----------EEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCC-CceEEecC-CC
Confidence 34445566777777643211100000 01122333457888998887766665444 48999995 68
Q ss_pred eEEEEecC-CCCEEEEEEeC
Q 001349 1015 NMVGSLPT-LSEVRAMVVSS 1033 (1094)
Q Consensus 1015 ~~~~~~~~-~~~v~~l~~sp 1033 (1094)
+.+..+.- ...+++++|-.
T Consensus 230 ~~~~~i~lP~~~~T~~~FGG 249 (295)
T d2ghsa1 230 NHIARYEVPGKQTTCPAFIG 249 (295)
T ss_dssp CEEEEEECSCSBEEEEEEES
T ss_pred cEeeEecCCCCceEEEEEeC
Confidence 88888874 46799999963
|
| >d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: UbcM4-interacting protein 4 (KIAA0161) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.67 E-value=1.1e-05 Score=70.44 Aligned_cols=44 Identities=14% Similarity=0.280 Sum_probs=33.5
Q ss_pred ceeccCcccccc--C-cEEcCCcccccHHhHHHHHHh----CCC---CCCCCCc
Q 001349 163 DFVCPITTHIFD--D-PVTLETGQTYERRAIQEWIER----GNS---SCPITRQ 206 (1094)
Q Consensus 163 ~~~CpIc~~~~~--d-Pv~~~cGhtfc~~ci~~~~~~----~~~---~CP~c~~ 206 (1094)
...||||++.+. + +.+++|||.||+.|+..|+.. +.. .||.|+-
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C 58 (94)
T d1wima_ 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC 58 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred CCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence 456999999885 3 455689999999999999863 222 4998653
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.24 E-value=0.06 Score=61.97 Aligned_cols=77 Identities=9% Similarity=0.075 Sum_probs=55.6
Q ss_pred EEEEEECCCCeEEEEecCCCCEE--EEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCC-EEEE
Q 001349 1005 AVKMWSTSNYNMVGSLPTLSEVR--AMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE-FLVI 1081 (1094)
Q Consensus 1005 ~I~iwd~~~~~~~~~~~~~~~v~--~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~-~L~s 1081 (1094)
.|.-+|+.+++.+.+........ .+...++.+++|+.||.++.+|.++|+.+..+..+....-.-+.|..||+ |+++
T Consensus 445 ~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v 524 (571)
T d2ad6a1 445 QIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGS 524 (571)
T ss_dssp EEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred cEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEE
Confidence 68889999999888776432222 24455678889999999999999999999988654433333355666885 5544
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.16 E-value=0.059 Score=54.82 Aligned_cols=215 Identities=10% Similarity=0.032 Sum_probs=112.4
Q ss_pred cccc--CcEEEEeeCCCCeEEEeCC-cceeecccCCCcEEEEEEeCC--EEEE-EECCC-----eEEEEecCCCcceeEE
Q 001349 781 LAFE--MVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFS-GHSDG-----TIKVWTGRGSILHLIQ 849 (1094)
Q Consensus 781 ~~~d--~~~l~s~s~dg~I~vWd~~-~~~~~~~~h~~~V~~l~fspd--~LaS-gs~Dg-----~I~vWd~~t~~~~~~~ 849 (1094)
++|| |.+++..+. |.|.+.|.. .....+..+.+.+...+|||| .|+- ...++ .|.+++..++....+.
T Consensus 6 ~sPdi~G~~v~f~~~-~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt 84 (281)
T d1k32a2 6 LNPDIHGDRIIFVCC-DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRIT 84 (281)
T ss_dssp EEEEEETTEEEEEET-TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECC
T ss_pred cCCCCCCCEEEEEeC-CcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEee
Confidence 5677 888877654 456555776 334456677788999999997 5553 33222 4777788887322221
Q ss_pred Ee----cccCCCeEEEEEecCCCEEEEEeCC------CcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCe
Q 001349 850 QI----REHTKAVTGLAILQSGEMLYSGSLD------KTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAG 919 (1094)
Q Consensus 850 ~l----~~H~~~V~sv~fspdg~~LaSgs~D------gtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~ 919 (1094)
.. ...........|+|||+.|+..... ..+..++...+.... .. ...... .+.+++..
T Consensus 85 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~--------~~~~~~~~ 152 (281)
T d1k32a2 85 YFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP--LN--LGPATH--------ILFADGRR 152 (281)
T ss_dssp CCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE--CC--SCSCSE--------EEEETTEE
T ss_pred ecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEE--ec--CCccce--------eeecCCCe
Confidence 11 1122345678999999998875432 234455555543211 11 111111 13333333
Q ss_pred EEEEEeC----------------------C-eEEEEcCCCCceEEEEeCCEEEEEE-c--CCeEEEEECCCCceeEEecc
Q 001349 920 IKVHLRN----------------------G-KTKLLNSSKYPKCLALVQGKVYCGC-Q--DGAIQEIDLATGTFATIQTG 973 (1094)
Q Consensus 920 l~~~~~~----------------------g-~i~l~~~~~~v~~l~~s~~~l~sgs-~--Dg~I~iwDl~~~~~~~~~~~ 973 (1094)
....... + ...............+.++.++... . ...|.++|+.++....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~---- 228 (281)
T d1k32a2 153 VIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRK---- 228 (281)
T ss_dssp EEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEE----
T ss_pred EEEeeccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeeccccceecccccccceEEEeCCCCceEE----
Confidence 2221111 0 1111122333444444555544433 2 2357777877665432
Q ss_pred ceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEE
Q 001349 974 HRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVG 1018 (1094)
Q Consensus 974 ~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~ 1018 (1094)
+..+. ......|++|+..++... ++ .|.++|+.+++...
T Consensus 229 ---lt~~~-~~~~~~~SpDG~~I~f~~-~~-~l~~~d~~~g~~~~ 267 (281)
T d1k32a2 229 ---HTSFT-DYYPRHLNTDGRRILFSK-GG-SIYIFNPDTEKIEK 267 (281)
T ss_dssp ---CCCCC-SSCEEEEEESSSCEEEEE-TT-EEEEECTTTCCEEE
T ss_pred ---eecCC-CcccccCcCCCCEEEEEe-CC-EEEEEECCCCCEEE
Confidence 11111 122335788887766543 44 78999988776543
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.07 E-value=0.21 Score=50.92 Aligned_cols=226 Identities=10% Similarity=0.024 Sum_probs=130.4
Q ss_pred cccCCCcEEEEEEeC--C-EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEE-EEeCCCcEEEEEC
Q 001349 809 DSSENGKVLSIACFR--D-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLY-SGSLDKTARVWSI 884 (1094)
Q Consensus 809 ~~~h~~~V~~l~fsp--d-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~La-Sgs~DgtI~vWdi 884 (1094)
+..+...+.+++|.. + .+.+-..++.|+..++.++. ....+......+.++++..-+..|+ +-...+.|.+.++
T Consensus 31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~--~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~ 108 (263)
T d1npea_ 31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE--PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKM 108 (263)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC--CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCC--cEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEec
Confidence 334455678899986 3 44445567889998988763 3333333345688999987555555 4455678999998
Q ss_pred CCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEEEcCCeEEEEECCC
Q 001349 885 GNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCGCQDGAIQEIDLAT 964 (1094)
Q Consensus 885 ~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sgs~Dg~I~iwDl~~ 964 (1094)
+......+.... ......++ +.|....+....++. ..+.|.-.++..
T Consensus 109 dg~~~~~l~~~~-l~~p~~l~-------vdp~~g~ly~t~~~~-------------------------~~~~I~r~~~dG 155 (263)
T d1npea_ 109 DGTQRRVLFDTG-LVNPRGIV-------TDPVRGNLYWTDWNR-------------------------DNPKIETSHMDG 155 (263)
T ss_dssp TSCSCEEEECSS-CSSEEEEE-------EETTTTEEEEEECCS-------------------------SSCEEEEEETTS
T ss_pred CCceEEEEeccc-ccCCcEEE-------EecccCcEEEeecCC-------------------------CCcEEEEecCCC
Confidence 876433332221 12233333 555554433222111 111233333332
Q ss_pred CceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEecCCCCEEEEEEeCCEEEEEE-cCC
Q 001349 965 GTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLPTLSEVRAMVVSSELVYLGC-KGG 1043 (1094)
Q Consensus 965 ~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd~l~sgs-~dg 1043 (1094)
...... ....-.....+++++....+.-+....+.|...|+........+.......++++..+.++... .++
T Consensus 156 ~~~~~i------~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~~~~lYwtd~~~~ 229 (263)
T d1npea_ 156 TNRRIL------AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTN 229 (263)
T ss_dssp CCCEEE------ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEETTEEEEEETTTT
T ss_pred CCceee------eeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEECCEEEEEECCCC
Confidence 222111 1111235678999866554444433335898899875544434444455678999888776665 568
Q ss_pred eEEEEECCCCcEEEEecccCCcceEEEEEcCC
Q 001349 1044 TVEIWDQKRQIRIETLQTGTSGKVQCMALDDN 1075 (1094)
Q Consensus 1044 ~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spd 1075 (1094)
.|...|..+++.+..+.........++++.++
T Consensus 230 ~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~~ 261 (263)
T d1npea_ 230 SVIAMDLAISKEMDTFHPHKQTRLYGITIALS 261 (263)
T ss_dssp EEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred EEEEEECCCCccceEECCCCCCCcceEEEeCC
Confidence 99999999999888774344445556666543
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.86 E-value=0.024 Score=61.41 Aligned_cols=110 Identities=9% Similarity=0.077 Sum_probs=68.5
Q ss_pred ccccCcEEEEeeCCC-----------CeEEEeCCcce-----eecccCCCcEEEEEEeCC--EEEEEECC-CeEEEEecC
Q 001349 781 LAFEMVKVLSNGHDS-----------SADFWNHRELV-----HVDSSENGKVLSIACFRD--KIFSGHSD-GTIKVWTGR 841 (1094)
Q Consensus 781 ~~~d~~~l~s~s~dg-----------~I~vWd~~~~~-----~~~~~h~~~V~~l~fspd--~LaSgs~D-g~I~vWd~~ 841 (1094)
+..+++.++.|+.+. .+.+||..+.. .....|.....+.++.++ +++.|+.+ .++.+||..
T Consensus 27 ~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~ 106 (387)
T d1k3ia3 27 EPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSS 106 (387)
T ss_dssp ETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGG
T ss_pred EeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCc
Confidence 344678788777531 25689887321 112233333345566665 66666544 689999999
Q ss_pred CCcceeEEEecccCCCeEEEEEecCCCEEEEEeCC------CcEEEEECCCCceEE
Q 001349 842 GSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD------KTARVWSIGNEEIHC 891 (1094)
Q Consensus 842 t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs~D------gtI~vWdi~~~~~~~ 891 (1094)
+..+.....+... ..-.+.+..+||++++.|+.+ ..+.+||..+++...
T Consensus 107 ~~~w~~~~~~~~~-r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~ 161 (387)
T d1k3ia3 107 SDSWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS 161 (387)
T ss_dssp GTEEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE
T ss_pred cCccccccccccc-ccccceeeecCCceeeeccccccccccceeeeecCCCCceee
Confidence 8855444333322 223456777899999998753 368999999876443
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.77 E-value=0.37 Score=49.18 Aligned_cols=258 Identities=12% Similarity=0.071 Sum_probs=144.2
Q ss_pred CCCeEEEeCCcceeecccCCCcEEEEEEeCC--EEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEE
Q 001349 794 DSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLY 871 (1094)
Q Consensus 794 dg~I~vWd~~~~~~~~~~h~~~V~~l~fspd--~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~La 871 (1094)
...|.|-|........+..- .--+.-.+|. .|+--+ ..++.++|+++. ..++.+.- ...|.--.|-. .+.|+
T Consensus 44 ~~~VvIidl~n~~~~~Rrpi-~AdsAIMhP~~~IiALra-g~~LQiFnletK--~klks~~~-~e~VvfWkWis-~~~L~ 117 (327)
T d1utca2 44 QAQVVIIDMNDPSNPIRRPI-SADSAIMNPASKVIALKA-GKTLQIFNIEMK--SKMKAHTM-TDDVTFWKWIS-LNTVA 117 (327)
T ss_dssp EEEEEEEETTSTTSCEEEEC-CCSEEEECSSSSEEEEEE-TTEEEEEETTTT--EEEEEEEC-SSCCCEEEESS-SSEEE
T ss_pred CceEEEEECCCCCcceeccc-chhhhhcCCCCcEEEEec-CCeEEEEehhHh--hhhceEEc-CCCcEEEEecC-CCEEE
Confidence 35677777763222211111 1112334554 444444 568999999998 67776653 44666667764 45566
Q ss_pred EEeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCEEEEE
Q 001349 872 SGSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGKVYCG 951 (1094)
Q Consensus 872 Sgs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~l~sg 951 (1094)
-.+. ..|+-|++++.. .....++......+... -....+++.+++++.+ ++-.++.+
T Consensus 118 lVT~-taVYHW~~~g~s-~P~k~fdR~~~L~~~QI--InY~~d~~~kW~~l~G----------------I~~~~~~i--- 174 (327)
T d1utca2 118 LVTD-NAVYHWSMEGES-QPVKMFDRHSSLAGCQI--INYRTDAKQKWLLLTG----------------ISAQQNRV--- 174 (327)
T ss_dssp EECS-SEEEEEESSSSC-CCEEEEECCGGGTTCEE--EEEEECTTSCEEEEEE----------------EEEETTEE---
T ss_pred EEcC-CceEEEcccCCC-CchhhhhhcccccCceE--EEEEECCCCCEEEEEe----------------EecCCCce---
Confidence 5554 479999996543 12222211111100000 0122556666655432 22334443
Q ss_pred EcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCc---cEEEEE--ECCCCEEEEEECCCCe---E-----EE
Q 001349 952 CQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGL---VYTAST--SLDGAAVKMWSTSNYN---M-----VG 1018 (1094)
Q Consensus 952 s~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~---~~las~--s~Dg~~I~iwd~~~~~---~-----~~ 1018 (1094)
.|.+++|..+.+.. +.+.||......+.+..+. .+++.+ +..++.++|.++.+.. . ..
T Consensus 175 --~G~mQLYS~er~~s-------Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~v 245 (327)
T d1utca2 175 --VGAMQLYSVDRKVS-------QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAV 245 (327)
T ss_dssp --EEEEEEEETTTTEE-------EEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEE
T ss_pred --eEEEEEEEeccCcC-------ccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeE
Confidence 27899999887654 3445554433333332111 111111 2223488888886421 1 11
Q ss_pred Ee--c---CCCCEEEEEEeCC--EEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEE
Q 001349 1019 SL--P---TLSEVRAMVVSSE--LVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQA 1090 (1094)
Q Consensus 1019 ~~--~---~~~~v~~l~~spd--~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~i 1090 (1094)
.+ + ..+...++.+|+. .++.-+.-|.|++||+.++.++..-+ -....|..-+-+.+..-+++...+|.|.-
T Consensus 246 di~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nR-Is~~~iF~~a~~~~~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 246 DVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR-ISGETIFVTAPHEATAGIIGVNRKGQVLS 323 (327)
T ss_dssp ECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred EEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEee-cCCCceEEeccCCCCceEEEECCCCeEEE
Confidence 11 1 2456778999987 78889999999999999999988763 44556665555666566777778887754
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=96.76 E-value=0.18 Score=57.92 Aligned_cols=76 Identities=12% Similarity=0.177 Sum_probs=54.8
Q ss_pred EEEEEECCCCeEEEEecCCCCE--EEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCC-EEE
Q 001349 1005 AVKMWSTSNYNMVGSLPTLSEV--RAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE-FLV 1080 (1094)
Q Consensus 1005 ~I~iwd~~~~~~~~~~~~~~~v--~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~-~L~ 1080 (1094)
.+.-||..+++.+.++...... ..++..++.+++|+.||.++.||..+|+.+..+..+....-.=+.|..||+ |++
T Consensus 458 ~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~ 536 (573)
T d1kb0a2 458 RLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (573)
T ss_dssp EEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred cEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEE
Confidence 6888999999999888744332 245666778999999999999999999999888643321111244556886 443
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=96.58 E-value=0.46 Score=54.08 Aligned_cols=78 Identities=12% Similarity=0.237 Sum_probs=56.6
Q ss_pred EEEEEECCCCeEEEEecCCCCEE--EEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCC-EEEE
Q 001349 1005 AVKMWSTSNYNMVGSLPTLSEVR--AMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE-FLVI 1081 (1094)
Q Consensus 1005 ~I~iwd~~~~~~~~~~~~~~~v~--~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~-~L~s 1081 (1094)
.+.-||+.+++.+..+....... .++...+++++|+.||.++.+|..+|+.+..+..+....-.-+.|..||+ +|++
T Consensus 439 ~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v 518 (560)
T d1kv9a2 439 ALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAI 518 (560)
T ss_dssp EEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred ceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEE
Confidence 68889999999998887433322 35566778889999999999999999999988654332222345666885 5554
Q ss_pred E
Q 001349 1082 G 1082 (1094)
Q Consensus 1082 g 1082 (1094)
.
T Consensus 519 ~ 519 (560)
T d1kv9a2 519 M 519 (560)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=96.57 E-value=0.53 Score=53.95 Aligned_cols=77 Identities=13% Similarity=0.141 Sum_probs=53.6
Q ss_pred EEEEEECCCCeEEEEecCCCCEE--EEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCC-EEEE
Q 001349 1005 AVKMWSTSNYNMVGSLPTLSEVR--AMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE-FLVI 1081 (1094)
Q Consensus 1005 ~I~iwd~~~~~~~~~~~~~~~v~--~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~-~L~s 1081 (1094)
.|.-||..+++.+.......... .+...++.++.|+.||.++.+|..+|+.+..+..+....-.=+.|..||+ |++.
T Consensus 454 ~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYvav 533 (596)
T d1w6sa_ 454 QIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAI 533 (596)
T ss_dssp EEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred eEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEEEE
Confidence 78899999999887766433222 23345668888999999999999999999988644332222344556885 4543
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=95.69 E-value=1.8 Score=48.99 Aligned_cols=71 Identities=8% Similarity=0.202 Sum_probs=45.1
Q ss_pred EEEEeCCEEEEEECCCeEEEEecCCCcceeEEEeccc---C-CCeEEEEEecCCCEEEEEe------CCCcEEEEECCCC
Q 001349 818 SIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREH---T-KAVTGLAILQSGEMLYSGS------LDKTARVWSIGNE 887 (1094)
Q Consensus 818 ~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H---~-~~V~sv~fspdg~~LaSgs------~DgtI~vWdi~~~ 887 (1094)
.+++..+.++.++.||.+.--|.+++ +.+....-. . ..+++--.-.++ .++.+. .+|.|+-+|..+|
T Consensus 110 g~a~~~~~i~~~~~~g~l~alda~tG--~~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG 186 (571)
T d2ad6a1 110 GLAYGAGQIVKKQANGHLLALDAKTG--KINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTG 186 (571)
T ss_dssp CCEEETTEEEEECTTSEEEEEETTTC--CEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTC
T ss_pred cceeeCCeEEEEeCCCcEEeeehhhh--hhhccccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCC
Confidence 46777788999999999999999999 455444211 1 112111111133 444444 2678999999999
Q ss_pred ceEE
Q 001349 888 EIHC 891 (1094)
Q Consensus 888 ~~~~ 891 (1094)
+..-
T Consensus 187 ~~~W 190 (571)
T d2ad6a1 187 ELKW 190 (571)
T ss_dssp CEEE
T ss_pred cEEE
Confidence 7433
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.53 E-value=1.5 Score=44.47 Aligned_cols=178 Identities=13% Similarity=0.238 Sum_probs=104.6
Q ss_pred ccccCcEEEEeeCCCCeEEEeCCcceee-cccCCCcEEEEEEeCC-EEEEEECCCeEEEEecCCCcceeEEEecccCC--
Q 001349 781 LAFEMVKVLSNGHDSSADFWNHRELVHV-DSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTK-- 856 (1094)
Q Consensus 781 ~~~d~~~l~s~s~dg~I~vWd~~~~~~~-~~~h~~~V~~l~fspd-~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~-- 856 (1094)
+.+....++.-+ ..++.++|++..... .......|.--.|-.+ .|+-.+ +..|+-|++++.. .+.+.+..|..
T Consensus 70 MhP~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT-~taVYHW~~~g~s-~P~k~fdR~~~L~ 146 (327)
T d1utca2 70 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT-DNAVYHWSMEGES-QPVKMFDRHSSLA 146 (327)
T ss_dssp ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESSSSEEEEEC-SSEEEEEESSSSC-CCEEEEECCGGGT
T ss_pred cCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecCCCEEEEEc-CCceEEEcccCCC-Cchhhhhhccccc
Confidence 444455555555 568999999743222 1123457777778665 555444 4579999996543 57777776653
Q ss_pred --CeEEEEEecCCCEEEEEeC-------CCcEEEEECCCCceEEEEecccCccceeeeecC-----ceEEEeeCCCeEEE
Q 001349 857 --AVTGLAILQSGEMLYSGSL-------DKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSN-----SILCFIPQGAGIKV 922 (1094)
Q Consensus 857 --~V~sv~fspdg~~LaSgs~-------DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~-----~~~~fspdg~~l~~ 922 (1094)
.|..-..+++.++++..|- .|.+.+|..+.+..+.+..+ ......+...+ ...+|...+..
T Consensus 147 ~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGh--aa~F~~~~~~g~~~~~~lf~fa~r~~~--- 221 (327)
T d1utca2 147 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGH--AASFAQFKMEGNAEESTLFCFAVRGQA--- 221 (327)
T ss_dssp TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCS--EEEEEEECCTTCSSCEEEEEEEEEETT---
T ss_pred CceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccce--eeeeEEEEcCCCCCCceEEEEEECCCC---
Confidence 5667777888888775532 36788999988643333322 11111111110 01223221110
Q ss_pred EEeCCeEEEEcC------------------------CCCceEEEEeC--CEEEEEEcCCeEEEEECCCCceeE
Q 001349 923 HLRNGKTKLLNS------------------------SKYPKCLALVQ--GKVYCGCQDGAIQEIDLATGTFAT 969 (1094)
Q Consensus 923 ~~~~g~i~l~~~------------------------~~~v~~l~~s~--~~l~sgs~Dg~I~iwDl~~~~~~~ 969 (1094)
.+++.+... ++..-++..++ |.++.-+.-|.|++||+.++.++.
T Consensus 222 ---~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~ 291 (327)
T d1utca2 222 ---GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 291 (327)
T ss_dssp ---EEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred ---CcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEE
Confidence 122222221 34556677765 679999999999999999999874
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.65 E-value=1.9 Score=48.85 Aligned_cols=77 Identities=16% Similarity=0.238 Sum_probs=56.6
Q ss_pred EEEEEECCCCeEEEEecCCCCEE--EEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecccCCcceEEEEEcCCCC-EEEE
Q 001349 1005 AVKMWSTSNYNMVGSLPTLSEVR--AMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEE-FLVI 1081 (1094)
Q Consensus 1005 ~I~iwd~~~~~~~~~~~~~~~v~--~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~-~L~s 1081 (1094)
.|.-+|+.+++....+....++. .++..+..+++|+.||.++.||..+|+.+..+..+....-.=+.|..||+ |++.
T Consensus 467 ~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i 546 (582)
T d1flga_ 467 SLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGV 546 (582)
T ss_dssp EEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred eEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEE
Confidence 68889999999988887443333 24555668889999999999999999999998654433223356777885 5543
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=94.60 E-value=1.3 Score=44.04 Aligned_cols=233 Identities=11% Similarity=0.057 Sum_probs=112.2
Q ss_pred hhhHhhhccCCchHHHHHHHHHHHhhcccccchhhhhccCCCcHHHHHHHHhcC----hHHHHHHHHhcCCChHHHHHhh
Q 001349 316 NGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTLIEMD 391 (1094)
Q Consensus 316 ~~~v~~L~~s~~~~v~~~av~~L~~l~s~~~~~~~~i~~~~~~~~~L~~lLk~g----~~~Aa~~l~~L~~~~~~~~~~~ 391 (1094)
+.+++.| .+.++.|...|+.+|..+.. +..++.|+.+|+.. ...|+.+|..+.........
T Consensus 22 ~~L~~~L-~d~~~~vR~~A~~~L~~~~~------------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~-- 86 (276)
T d1oyza_ 22 DELFRLL-DDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN-- 86 (276)
T ss_dssp HHHHHHT-TCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH--
T ss_pred HHHHHHh-cCCCHHHHHHHHHHHHhhCC------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccc--
Confidence 3344433 46788888888888887732 12467788888765 45666777777544322111
Q ss_pred hhHHHHHHHHhccccccccccCchhhHHHHHHHHhcCCcccccccchhhhccchhHHHHHHhhhcccHHHHHHHHHHHHH
Q 001349 392 MMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLR 471 (1094)
Q Consensus 392 ~~~~Ll~~l~~~~~~~~~~~~~~~~aa~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~ 471 (1094)
..+.|+..+-+.... .-+.+++..|..+. ..........++.+...+.......|..|+.++..
T Consensus 87 ~~~~l~~~~l~d~~~------~vr~~a~~aL~~~~----------~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~ 150 (276)
T d1oyza_ 87 VFNILNNMALNDKSA------CVRATAIESTAQRC----------KKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISV 150 (276)
T ss_dssp HHHHHHHHHHHCSCH------HHHHHHHHHHHHHH----------HHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHhcCCCh------hHHHHHHHHHHHHc----------cccchhhHHHHHHHHHHhcCcchHHHHHHHHHHhh
Confidence 123444444332211 11344444444331 11112223445666666665566556555443321
Q ss_pred HhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhccccchh---------------HHHHHHhhhcCcc
Q 001349 472 CMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFN---------------EQILHIIKDEGTY 536 (1094)
Q Consensus 472 ~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r~~~~---------------~~~l~~i~~~~~~ 536 (1094)
+.+...++.++.++.......+..+...+... ........ ......+...|.-
T Consensus 151 -----------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~ 218 (276)
T d1oyza_ 151 -----------INDKATIPLLINLLKDPNGDVRNWAAFAININ-KYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDK 218 (276)
T ss_dssp -----------C---CCHHHHHHHHTCSSHHHHHHHHHHHHHH-TCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCG
T ss_pred -----------cchHHHHHHHHHhcccccchhhhhHHHHHHhh-hccccccchhhhhhhhhhhhhhhhhhccccchhhhh
Confidence 11223344444444433333333222222111 11000000 0011112222333
Q ss_pred hhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 001349 537 SSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTI 604 (1094)
Q Consensus 537 ~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~~~~~~~~~~~~~ 604 (1094)
.....|+..++ .++-+-.++..|.++. + ++++..|...|...+...++..|.++|
T Consensus 219 ~~~~~L~~~l~--d~~vr~~a~~aL~~ig---~--------~~~~~~L~~~l~~~~d~~vr~~A~~~L 273 (276)
T d1oyza_ 219 RVLSVLCDELK--KNTVYDDIIEAAGELG---D--------KTLLPVLDTMLYKFDDNEIITSAIDKL 273 (276)
T ss_dssp GGHHHHHHHHT--SSSCCHHHHHHHHHHC---C--------GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred hhHHHHHHHhC--ChHHHHHHHHHHHHcC---C--------HHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 33444666664 2344556666666653 2 357888888888776677787777765
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.47 E-value=2.8 Score=42.02 Aligned_cols=226 Identities=10% Similarity=-0.049 Sum_probs=121.5
Q ss_pred CCeEEEeCCc-ceeecccCCCcEEEEEEeC--CEE-EEEECCCeEEEEecCCCc--ceeEEEecccCCCeEEEEEecCCC
Q 001349 795 SSADFWNHRE-LVHVDSSENGKVLSIACFR--DKI-FSGHSDGTIKVWTGRGSI--LHLIQQIREHTKAVTGLAILQSGE 868 (1094)
Q Consensus 795 g~I~vWd~~~-~~~~~~~h~~~V~~l~fsp--d~L-aSgs~Dg~I~vWd~~t~~--~~~~~~l~~H~~~V~sv~fspdg~ 868 (1094)
..|+-.++.. ....+......+.+++|.. +.| .+-..++.|.-.++.... ......+...-..+..+++.+.+.
T Consensus 10 ~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~ 89 (266)
T d1ijqa1 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 89 (266)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred CeEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccc
Confidence 3577677762 2223334556788999986 344 444466777777665321 011222233345577889887555
Q ss_pred EEEEE-eCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEeCCE
Q 001349 869 MLYSG-SLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALVQGK 947 (1094)
Q Consensus 869 ~LaSg-s~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s~~~ 947 (1094)
.|+.+ ...++|.+.+++......... ........++ +.|....+....+.
T Consensus 90 ~lY~~d~~~~~I~v~~~~g~~~~~~~~-~~~~~P~~l~-------vd~~~g~ly~~~~~--------------------- 140 (266)
T d1ijqa1 90 NIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIV-------VDPVHGFMYWTDWG--------------------- 140 (266)
T ss_dssp EEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEE-------EETTTTEEEEEECS---------------------
T ss_pred eEEEEecCCCEEEeEecCCceEEEEEc-CCCCCcceEE-------EEcccCeEEEeccC---------------------
Confidence 55444 556789999988764332222 1122233333 44443333222111
Q ss_pred EEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec---CCC
Q 001349 948 VYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP---TLS 1024 (1094)
Q Consensus 948 l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~---~~~ 1024 (1094)
..+.|.-.++........ ....-...+.+++++.+..+.-+....+.|...|+.......... ...
T Consensus 141 -----~~~~I~r~~~dGs~~~~l------~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~ 209 (266)
T d1ijqa1 141 -----TPAKIKKGGLNGVDIYSL------VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA 209 (266)
T ss_dssp -----SSCEEEEEETTSCCEEEE------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTS
T ss_pred -----CCcceeEeccCCCceecc------cccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCccc
Confidence 122344444433222211 111224567888987655444443333488888886543322222 234
Q ss_pred CEEEEEEeCCEEEEEE-cCCeEEEEECCCCcEEEEec
Q 001349 1025 EVRAMVVSSELVYLGC-KGGTVEIWDQKRQIRIETLQ 1060 (1094)
Q Consensus 1025 ~v~~l~~spd~l~sgs-~dg~I~vwd~~t~~~~~~l~ 1060 (1094)
...++++..+.++... .++.|+..+..+++....+.
T Consensus 210 ~p~~lav~~~~ly~td~~~~~I~~~~~~~g~~~~~~~ 246 (266)
T d1ijqa1 210 HPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (266)
T ss_dssp SEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred ccEEEEEECCEEEEEECCCCeEEEEECCCCcceEEEE
Confidence 5778999988766665 66889999988887666663
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=94.44 E-value=2.7 Score=47.69 Aligned_cols=49 Identities=14% Similarity=0.101 Sum_probs=35.0
Q ss_pred CeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1043 GTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1043 g~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
|.|.-||..+|+.+.... +...+.+-.++..|.++++|+.||.++.+|.
T Consensus 453 G~l~A~D~~TG~~~W~~~--~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da 501 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKM--ERFAVWGGTMATAGDLVFYGTLDGYLKARDS 501 (596)
T ss_dssp EEEEEECTTTCCEEEEEE--ESSCCCSBCEEETTTEEEEECTTSEEEEEET
T ss_pred ceEEEEeCCCCceecccC--CCCCCccceeEecCCEEEEECCCCeEEEEEC
Confidence 568888999998877663 2223333334456788889999999999885
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=94.34 E-value=1.7 Score=46.54 Aligned_cols=202 Identities=11% Similarity=0.058 Sum_probs=106.5
Q ss_pred CCCEEEEEe-CCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEee--CCCeEEEEEeCCeEEEEcCCCCceEEE
Q 001349 866 SGEMLYSGS-LDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIP--QGAGIKVHLRNGKTKLLNSSKYPKCLA 942 (1094)
Q Consensus 866 dg~~LaSgs-~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fsp--dg~~l~~~~~~g~i~l~~~~~~v~~l~ 942 (1094)
||++++... .+..|-+-|+++.+...+...+....+..+. ..+ .-.+++...... +.+-+-...+.
T Consensus 98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r-------~~~~p~T~YV~~~~e~~-vP~pndg~~l~--- 166 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLR-------PQKWPRSNYVFCNGEDE-TPLVNDGTNME--- 166 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEE-------ECCSSBCSEEEEEECSC-EESSCSSSSTT---
T ss_pred ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceee-------cccCCCeEEEEccCccc-cccCCCCcccc---
Confidence 788887776 4788999999997643343444444444433 222 222332222211 00000000000
Q ss_pred EeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCC--------------EE--
Q 001349 943 LVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGA--------------AV-- 1006 (1094)
Q Consensus 943 ~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~--------------~I-- 1006 (1094)
.+.. ..+.+..+|..+.+...... + ......+.+++++.++++.+.+.. .+
T Consensus 167 -d~~~-----y~~~~t~ID~~tm~V~~QV~----V---~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V 233 (459)
T d1fwxa2 167 -DVAN-----YVNVFTAVDADKWEVAWQVL----V---SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVV 233 (459)
T ss_dssp -CGG------EEEEEEEEETTTTEEEEEEE----E---SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEE
T ss_pred -chhh-----cceEEEEEecCCceEEEEee----e---CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEE
Confidence 0000 01235567777666553211 1 124556788888888877764310 22
Q ss_pred ---------------------EEEECCC---CeEEEEecCCCCEEEEEEeCC--E-EEEEEcCCeEEEEECCCCc-----
Q 001349 1007 ---------------------KMWSTSN---YNMVGSLPTLSEVRAMVVSSE--L-VYLGCKGGTVEIWDQKRQI----- 1054 (1094)
Q Consensus 1007 ---------------------~iwd~~~---~~~~~~~~~~~~v~~l~~spd--~-l~sgs~dg~I~vwd~~t~~----- 1054 (1094)
.+-|.++ ...+..+.-+.....+.++|| + +++|.-+.++.|+|++.-.
T Consensus 234 ~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~ 313 (459)
T d1fwxa2 234 FNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYE 313 (459)
T ss_dssp EEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHS
T ss_pred echHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcc
Confidence 3344332 123333444455667889999 4 4455578999999986321
Q ss_pred -------EEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1055 -------RIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1055 -------~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
..... ...-.-...+|+.+|....|---|..|--|++
T Consensus 314 ~~~~~~~~~~e~--elglgPLht~fd~~g~aytslfids~v~kw~~ 357 (459)
T d1fwxa2 314 NADPRSAVVAEP--ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNI 357 (459)
T ss_dssp CC-GGGGEEECC--BCCSCEEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred cCCccccEEeec--ccCcCccccccCCCceEEEEeeccceEEEEec
Confidence 11111 12223556678888865555567899999986
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=94.18 E-value=0.38 Score=51.31 Aligned_cols=57 Identities=14% Similarity=0.285 Sum_probs=40.8
Q ss_pred eEEEEecCCCcceeEEEe-cccCCCeEEEEEecCCCEEEEEeCC-CcEEEEECCCCceE
Q 001349 834 TIKVWTGRGSILHLIQQI-REHTKAVTGLAILQSGEMLYSGSLD-KTARVWSIGNEEIH 890 (1094)
Q Consensus 834 ~I~vWd~~t~~~~~~~~l-~~H~~~V~sv~fspdg~~LaSgs~D-gtI~vWdi~~~~~~ 890 (1094)
.+.+||..++.+...... ..|.......++.++|.+++.|+.+ .++.+||..++...
T Consensus 53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~ 111 (387)
T d1k3ia3 53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWI 111 (387)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEE
T ss_pred EEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCccc
Confidence 377899999866544333 2344444567788999999988765 58999999987543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=94.10 E-value=0.53 Score=50.55 Aligned_cols=148 Identities=7% Similarity=0.130 Sum_probs=91.8
Q ss_pred EEEEeCC----E-E-EEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEe--CCccEEEEEECCC--------
Q 001349 940 CLALVQG----K-V-YCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVH--NGLVYTASTSLDG-------- 1003 (1094)
Q Consensus 940 ~l~~s~~----~-l-~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs--~~~~~las~s~Dg-------- 1003 (1094)
.+.+.+| + + +.-..++.|-+.|+.+.+...+... .....++.+... |+..|++..+.+.
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~i-----Pn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~ 163 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEI-----PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGT 163 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC-----SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSS
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEec-----CCCCCCceeecccCCCeEEEEccCccccccCCCCc
Confidence 5666553 2 3 4445678999999999887543221 223455666653 5666777665431
Q ss_pred ---------CEEEEEECCCCeEEEEecCCCCEEEEEEeCC--EEEEEEcCC---------------eE------------
Q 001349 1004 ---------AAVKMWSTSNYNMVGSLPTLSEVRAMVVSSE--LVYLGCKGG---------------TV------------ 1045 (1094)
Q Consensus 1004 ---------~~I~iwd~~~~~~~~~~~~~~~v~~l~~spd--~l~sgs~dg---------------~I------------ 1045 (1094)
+.+..+|..+.+....+.-......+.++++ ++++.+.+. .+
T Consensus 164 ~l~d~~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av 243 (459)
T d1fwxa2 164 NMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAI 243 (459)
T ss_dssp STTCGG-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHH
T ss_pred cccchhhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhh
Confidence 2467889999888888775666677888887 666655331 13
Q ss_pred -----------EEEECCCC---cEEEEecccCCcceEEEEEcCCCCEEEEEe-CCCcEEEEeCC
Q 001349 1046 -----------EIWDQKRQ---IRIETLQTGTSGKVQCMALDDNEEFLVIGT-SDGRIQAWGLS 1094 (1094)
Q Consensus 1046 -----------~vwd~~t~---~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs-~DG~I~iWdls 1094 (1094)
.+-|.... ..+..+.. ......+.++|||+++++++ -+.++.|+|++
T Consensus 244 ~~Gk~~eingV~VVD~~~~~~~~v~~yIPV--pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~ 305 (459)
T d1fwxa2 244 AAGDYQELNGVKVVDGRKEASSLFTRYIPI--ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVT 305 (459)
T ss_dssp HHTCSEEETTEEEEECSGG--CSSEEEEEE--ESSCCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred hcCCcEEeCCceeecccccCCcceeEEEec--CCCCCceEECCCCCEEEEeCCcCCcEEEEEeh
Confidence 33333221 12222211 12356789999999987665 48899999873
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=93.78 E-value=2.7 Score=44.00 Aligned_cols=127 Identities=8% Similarity=0.046 Sum_probs=68.8
Q ss_pred CCeEEEEECCCCceeEEeccceeec-CCCCCeEEEEEeCCccEEEEEECCC--------------CEEEEEECCCCeEEE
Q 001349 954 DGAIQEIDLATGTFATIQTGHRKLL-GKANPVHALQVHNGLVYTASTSLDG--------------AAVKMWSTSNYNMVG 1018 (1094)
Q Consensus 954 Dg~I~iwDl~~~~~~~~~~~~~~~~-~h~~~V~sl~fs~~~~~las~s~Dg--------------~~I~iwd~~~~~~~~ 1018 (1094)
..+|.+|++.......... ..+. ......+.+.+..++.+.++-.... .+..+|....+....
T Consensus 123 ~~~ieif~~~~~~~~l~~~--~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~ 200 (340)
T d1v04a_ 123 SSTVEVFKFQEEEKSLLHL--KTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRV 200 (340)
T ss_dssp CCEEEEEEEETTTTEEEEE--EEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEE
T ss_pred CceeEEEEEeCCCCeEEEE--eecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEE
Confidence 4567777765433221111 1111 1224578888888888877741100 133444444444333
Q ss_pred EecCCCCEEEEEEeCC--EE-EEEEcCCeEEEEECCCCcEEEEec-ccCCcceEEEEEcC-CCCEEEEE
Q 001349 1019 SLPTLSEVRAMVVSSE--LV-YLGCKGGTVEIWDQKRQIRIETLQ-TGTSGKVQCMALDD-NEEFLVIG 1082 (1094)
Q Consensus 1019 ~~~~~~~v~~l~~spd--~l-~sgs~dg~I~vwd~~t~~~~~~l~-~~h~~~I~~l~~Sp-dg~~L~sg 1082 (1094)
....-...+.++++|| ++ ++-+..+.|++|++.....+.... ..-.+..-.+.+.+ +|.+.+++
T Consensus 201 ~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 201 VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred EcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence 3344567899999998 44 445677899999987543222111 11234566777765 44444443
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=92.27 E-value=2.8 Score=47.12 Aligned_cols=49 Identities=18% Similarity=0.305 Sum_probs=35.7
Q ss_pred CeEEEEECCCCcEEEEecccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1043 GTVEIWDQKRQIRIETLQTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1043 g~I~vwd~~t~~~~~~l~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
|.|.-||+.+++.+..+..+ ....+-.++..|.++++|+.||.++.+|.
T Consensus 438 G~l~A~D~~tGk~~W~~~~~--~~~~gg~l~TagglVF~G~~dg~l~A~Da 486 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYP--THWNGGTLSTAGNLVFQGTAAGQMHAYSA 486 (560)
T ss_dssp EEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred cceEEEeCCCCeEeeeccCC--CCCCCceeEECCCEEEEECCCCcEEEEEC
Confidence 56888999999988877532 22332234445778889999999999885
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.81 E-value=8.7 Score=38.14 Aligned_cols=216 Identities=11% Similarity=0.027 Sum_probs=112.8
Q ss_pred CeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCceEEEEecccCccceeeeecCceE
Q 001349 833 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGS-LDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSIL 911 (1094)
Q Consensus 833 g~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaSgs-~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~ 911 (1094)
..|+-.++.+..... +......+.+++|.+..+.|+-.. .++.|+-.+++...... ....+
T Consensus 10 ~~I~~~~l~~~~~~~---~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~--------~~~~~------- 71 (266)
T d1ijqa1 10 HEVRKMTLDRSEYTS---LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS--------SYDTV------- 71 (266)
T ss_dssp SSEEEEETTSCCCEE---EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC----------------CEEE-------
T ss_pred CeEEEEECCCCccee---eeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCc--------ceEEE-------
Confidence 358888998773322 233556778999998776665543 45556655554321000 00000
Q ss_pred EEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEe--CCEEEEE-EcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEE
Q 001349 912 CFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV--QGKVYCG-CQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQ 988 (1094)
Q Consensus 912 ~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s--~~~l~sg-s~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~ 988 (1094)
.. .....+..+++. .+.|+.. ...+.|.+.++....... ...........++
T Consensus 72 -~~------------------~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~------~~~~~~~~P~~l~ 126 (266)
T d1ijqa1 72 -IS------------------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT------LFRENGSKPRAIV 126 (266)
T ss_dssp -EC------------------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEE------EEECTTCCEEEEE
T ss_pred -Ee------------------CCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEE------EEcCCCCCcceEE
Confidence 00 001123334433 3444444 345678888887655432 1222335678899
Q ss_pred EeCC-ccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEE-EcCCeEEEEECCCCcEEEEecc-c
Q 001349 989 VHNG-LVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLG-CKGGTVEIWDQKRQIRIETLQT-G 1062 (1094)
Q Consensus 989 fs~~-~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sg-s~dg~I~vwd~~t~~~~~~l~~-~ 1062 (1094)
++|. +.+..+.......|.-.++.......... .-....++++++. .++.+ ...+.|...|+........+.. .
T Consensus 127 vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~ 206 (266)
T d1ijqa1 127 VDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK 206 (266)
T ss_dssp EETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTT
T ss_pred EEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCC
Confidence 9874 44444432222356666665443333333 3466789999865 45544 5678999999876543333311 1
Q ss_pred CCcceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001349 1063 TSGKVQCMALDDNEEFLVIGTSDGRIQAWG 1092 (1094)
Q Consensus 1063 h~~~I~~l~~Spdg~~L~sgs~DG~I~iWd 1092 (1094)
......++++. ++.+..+-..++.|...+
T Consensus 207 ~~~~p~~lav~-~~~ly~td~~~~~I~~~~ 235 (266)
T d1ijqa1 207 RLAHPFSLAVF-EDKVFWTDIINEAIFSAN 235 (266)
T ss_dssp TTSSEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred cccccEEEEEE-CCEEEEEECCCCeEEEEE
Confidence 22345677776 334444444566666554
|
| >d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Cellulose synthase A catalytic subunit 7, IRX3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=89.87 E-value=0.18 Score=40.31 Aligned_cols=48 Identities=19% Similarity=0.285 Sum_probs=38.6
Q ss_pred ceeccCcccccc-----CcEEc--CCcccccHHhHHHHHHhCCCCCCCCCcCCCC
Q 001349 163 DFVCPITTHIFD-----DPVTL--ETGQTYERRAIQEWIERGNSSCPITRQKLSS 210 (1094)
Q Consensus 163 ~~~CpIc~~~~~-----dPv~~--~cGhtfc~~ci~~~~~~~~~~CP~c~~~~~~ 210 (1094)
.-.|.||.+-.- +|++. .|+.-.||.|.+-=.+.++..||.|+.++..
T Consensus 16 ~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCkt~Ykr 70 (93)
T d1weoa_ 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred cchhhhcccccccCCCCCEEEEecccCCccchHHHHHHHhccCccCcccCChhhh
Confidence 457999987653 46665 6999999999987777888899999987754
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.52 E-value=11 Score=37.31 Aligned_cols=214 Identities=11% Similarity=0.016 Sum_probs=114.0
Q ss_pred CeEEEEecCCCcc---eeEEEecccCCCeEEEEEecCCCEEEEE-eCCCcEEEEECCCCceEEEEecccCccceeeeecC
Q 001349 833 GTIKVWTGRGSIL---HLIQQIREHTKAVTGLAILQSGEMLYSG-SLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSN 908 (1094)
Q Consensus 833 g~I~vWd~~t~~~---~~~~~l~~H~~~V~sv~fspdg~~LaSg-s~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~ 908 (1094)
+.|+-.++++... .....+..+...+..++|.+..+.|+-. ..++.|+..+++++....+.... -..
T Consensus 10 ~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~-~~~-------- 80 (263)
T d1npea_ 10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD-LGS-------- 80 (263)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT-CCC--------
T ss_pred CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEec-ccc--------
Confidence 4566666654321 1222334455568889999876666554 45677888787765433222111 111
Q ss_pred ceEEEeeCCCeEEEEEeCCeEEEEcCCCCceEEEEe--CCEEEEE-EcCCeEEEEECCCCceeEEeccceeecCCCCCeE
Q 001349 909 SILCFIPQGAGIKVHLRNGKTKLLNSSKYPKCLALV--QGKVYCG-CQDGAIQEIDLATGTFATIQTGHRKLLGKANPVH 985 (1094)
Q Consensus 909 ~~~~fspdg~~l~~~~~~g~i~l~~~~~~v~~l~~s--~~~l~sg-s~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~ 985 (1094)
+.+++++ .+.|+.+ ...+.|.+.++......... ........
T Consensus 81 -----------------------------p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~------~~~l~~p~ 125 (263)
T d1npea_ 81 -----------------------------PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF------DTGLVNPR 125 (263)
T ss_dssp -----------------------------EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE------CSSCSSEE
T ss_pred -----------------------------ccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEe------cccccCCc
Confidence 2233332 2344433 34567888887655432111 11224678
Q ss_pred EEEEeCCccEEEEEECCCCE--EEEEECCCCeEEEEec-CCCCEEEEEEeCC--EEEEE-EcCCeEEEEECCCCcEEEEe
Q 001349 986 ALQVHNGLVYTASTSLDGAA--VKMWSTSNYNMVGSLP-TLSEVRAMVVSSE--LVYLG-CKGGTVEIWDQKRQIRIETL 1059 (1094)
Q Consensus 986 sl~fs~~~~~las~s~Dg~~--I~iwd~~~~~~~~~~~-~~~~v~~l~~spd--~l~sg-s~dg~I~vwd~~t~~~~~~l 1059 (1094)
.++++|...++.-....... |.--++.......... .-....++++++. .++.+ ...+.|...|+........+
T Consensus 126 ~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~ 205 (263)
T d1npea_ 126 GIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL 205 (263)
T ss_dssp EEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE
T ss_pred EEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEE
Confidence 89998765555444322223 4333554333222222 3456789999865 55554 46789999998765544344
Q ss_pred cccCCcceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001349 1060 QTGTSGKVQCMALDDNEEFLVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1060 ~~~h~~~I~~l~~Spdg~~L~sgs~DG~I~iWdl 1093 (1094)
.+.. ...+|++. ++.+..+-..++.|...|.
T Consensus 206 -~~~~-~P~~lav~-~~~lYwtd~~~~~I~~~~~ 236 (263)
T d1npea_ 206 -EGLQ-YPFAVTSY-GKNLYYTDWKTNSVIAMDL 236 (263)
T ss_dssp -ECCC-SEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred -CCCC-CcEEEEEE-CCEEEEEECCCCEEEEEEC
Confidence 2322 34678775 3333344445566666553
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.22 E-value=18 Score=38.28 Aligned_cols=229 Identities=10% Similarity=0.095 Sum_probs=114.5
Q ss_pred cCCCcEEEEEEeCC---EEEEEECCC----eEEEEecCCCcceeEE-EecccCCCeEEEEEecCCCEEEEEeCC------
Q 001349 811 SENGKVLSIACFRD---KIFSGHSDG----TIKVWTGRGSILHLIQ-QIREHTKAVTGLAILQSGEMLYSGSLD------ 876 (1094)
Q Consensus 811 ~h~~~V~~l~fspd---~LaSgs~Dg----~I~vWd~~t~~~~~~~-~l~~H~~~V~sv~fspdg~~LaSgs~D------ 876 (1094)
++.-.+...++||| .+++-+.+| +|++.|+.+++ .+. .+.. .....+.|++|++.|+-...|
T Consensus 122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~--~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~ 197 (430)
T d1qfma1 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK--ELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKS 197 (430)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTE--EEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred cccceecceEecCCCCEEEEEeccccCchheeEEeccCcce--eccccccc--ccccceEEcCCCCEEEEEEeccccCcc
Confidence 33334456677887 444444444 69999999994 332 2321 112568899999977654432
Q ss_pred ----------CcEEEEECCCCceEEEEecc---cCccceeeeecCceEEEeeCCCeEEEEEeC---CeEEEE--cCC---
Q 001349 877 ----------KTARVWSIGNEEIHCVQVHD---IKDQIQNLAVSNSILCFIPQGAGIKVHLRN---GKTKLL--NSS--- 935 (1094)
Q Consensus 877 ----------gtI~vWdi~~~~~~~~~~~~---~~~~V~~v~~~~~~~~fspdg~~l~~~~~~---g~i~l~--~~~--- 935 (1094)
..|..|.+.+....-..... ....+..+. .+.+++++.+.... +...+| +..
T Consensus 198 ~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~-------~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~ 270 (430)
T d1qfma1 198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE-------LSDDGRYVLLSIREGCDPVNRLWYCDLQQES 270 (430)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEE-------ECTTSCEEEEEEECSSSSCCEEEEEEGGGSS
T ss_pred cccccccCCcceEEEEECCCCccccccccccccCCceEEeee-------ccCCcceeeEEeeccCCccEEEEEeeCCCcc
Confidence 24777777776422111111 112223333 67888887765543 222333 210
Q ss_pred -----------------CCceEEEEeCCEEEEEEc----CCeEEEEECCCCceeEEeccceeec-CCCCCeEEEEEeC-C
Q 001349 936 -----------------KYPKCLALVQGKVYCGCQ----DGAIQEIDLATGTFATIQTGHRKLL-GKANPVHALQVHN-G 992 (1094)
Q Consensus 936 -----------------~~v~~l~~s~~~l~sgs~----Dg~I~iwDl~~~~~~~~~~~~~~~~-~h~~~V~sl~fs~-~ 992 (1094)
....-+...++.++.-+. ++.|...++....... -..+. .+...+..-.+.. +
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~----w~~vi~~~~~~~~~~~~~~~~ 346 (430)
T d1qfma1 271 NGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESK----WKVLVPEHEKDVLEWVACVRS 346 (430)
T ss_dssp SSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGG----CEEEECCCSSCEEEEEEEETT
T ss_pred cccccccceeEeecccccceEEEecCCceeecccCcccccceeEEecCCCCcccc----ceEEecccCcceeeeEEEEEC
Confidence 011112223344443332 3455555655432110 01222 2334444333332 3
Q ss_pred ccEEEEEECCC-CEEEEEECCCCeEEEEec-CCCCEEEEEEeCC---EEEE-EE--cCCeEEEEECCCCc
Q 001349 993 LVYTASTSLDG-AAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSE---LVYL-GC--KGGTVEIWDQKRQI 1054 (1094)
Q Consensus 993 ~~~las~s~Dg-~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd---~l~s-gs--~dg~I~vwd~~t~~ 1054 (1094)
+.+++....++ ..|++++..++.....+. ..+.+..+...++ ..+. .| .-.+++-||+.+++
T Consensus 347 ~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~ 416 (430)
T d1qfma1 347 NFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (430)
T ss_dssp TEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence 33334443443 268899998877655444 3344544443333 2222 22 23788999998875
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.68 E-value=1.6 Score=49.09 Aligned_cols=152 Identities=11% Similarity=0.050 Sum_probs=84.4
Q ss_pred chhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhccccchh
Q 001349 444 SKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFN 523 (1094)
Q Consensus 444 ~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r~~~~ 523 (1094)
..-++.+...++..+.+.|..++.+|-...+.-+. ..+ ...-.+.++.++.......|..|+..|..|+..-+..+.
T Consensus 401 ~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~--~~~-~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~~~ 477 (588)
T d1b3ua_ 401 QSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV--EFF-DEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA 477 (588)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG--GGC-CHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCh--HhH-HHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcHHH
Confidence 34568888999999999999888877665443221 011 111112334445555666687888888888765332221
Q ss_pred HHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 001349 524 EQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKT 603 (1094)
Q Consensus 524 ~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~~~~~~~~~~~~ 603 (1094)
... .+..+..++......++-.++..+.++-- .-....++++-++.|+..+.+. .++++..++++
T Consensus 478 ~~~-----------i~~~l~~~~~~~~~~~R~~~~~~l~~l~~---~~~~~~~~~~ilp~ll~~~~D~-v~nVR~~a~~~ 542 (588)
T d1b3ua_ 478 HAT-----------IIPKVLAMSGDPNYLHRMTTLFCINVLSE---VCGQDITTKHMLPTVLRMAGDP-VANVRFNVAKS 542 (588)
T ss_dssp HHH-----------THHHHHHTTTCSCHHHHHHHHHHHHHHHH---HHHHHHHHHHTHHHHHHGGGCS-CHHHHHHHHHH
T ss_pred HHH-----------HHHHHHHHhcCCCHHHHHHHHHHHHHHHH---HcChHHHHHHHHHHHHHHcCCC-CHHHHHHHHHH
Confidence 111 11222222222222222233333333211 1112345677888888877654 46899999999
Q ss_pred HHhccccccc
Q 001349 604 IVSLQGRFTT 613 (1094)
Q Consensus 604 ~~~l~g~~s~ 613 (1094)
|..++..+..
T Consensus 543 l~~i~~~~~~ 552 (588)
T d1b3ua_ 543 LQKIGPILDN 552 (588)
T ss_dssp HHHHGGGSCH
T ss_pred HHHHHHHcCc
Confidence 9998776644
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=86.62 E-value=20 Score=39.80 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=28.4
Q ss_pred EEEEeCCEEEEEEcCCeEEEEECCCCceeEEec
Q 001349 940 CLALVQGKVYCGCQDGAIQEIDLATGTFATIQT 972 (1094)
Q Consensus 940 ~l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~ 972 (1094)
.++..++.+++|+.||.++.+|..+|+.+..+.
T Consensus 483 ~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~ 515 (573)
T d1kb0a2 483 TLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP 515 (573)
T ss_dssp EEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eEEEcCCEEEEECCCCeEEEEECCCCcEeEEEE
Confidence 456667889999999999999999999997654
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.19 E-value=18 Score=35.25 Aligned_cols=87 Identities=11% Similarity=0.150 Sum_probs=44.3
Q ss_pred EEEEEECCCCeEEEEec--CCCCEEEEEEeCC-EEEEEEcC-----CeEEEEECCCCcEEEEecccCCcce-EEEEEcCC
Q 001349 1005 AVKMWSTSNYNMVGSLP--TLSEVRAMVVSSE-LVYLGCKG-----GTVEIWDQKRQIRIETLQTGTSGKV-QCMALDDN 1075 (1094)
Q Consensus 1005 ~I~iwd~~~~~~~~~~~--~~~~v~~l~~spd-~l~sgs~d-----g~I~vwd~~t~~~~~~l~~~h~~~I-~~l~~Spd 1075 (1094)
.+..||..+.+-...-. ......+.....+ .++.|+.+ .....+|..+.+....- .....+. .+++. .+
T Consensus 165 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~r~~~~~~~-~~ 242 (288)
T d1zgka1 165 SAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA-PMKHRRSALGITV-HQ 242 (288)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECC-CCSSCCBSCEEEE-ET
T ss_pred eEEEeeccccccccccccccccccccccceeeeEEEecCccccccccceeeeeecceeeeccc-CccCcccceEEEE-EC
Confidence 57888887665332221 1222223444445 44444433 35678888776543321 1111111 12222 36
Q ss_pred CCEEEEEeCCCc-----EEEEeC
Q 001349 1076 EEFLVIGTSDGR-----IQAWGL 1093 (1094)
Q Consensus 1076 g~~L~sgs~DG~-----I~iWdl 1093 (1094)
+++++.|+.++. |.+||+
T Consensus 243 ~~l~v~GG~~~~~~~~~v~~yd~ 265 (288)
T d1zgka1 243 GRIYVLGGYDGHTFLDSVECYDP 265 (288)
T ss_dssp TEEEEECCBCSSCBCCEEEEEET
T ss_pred CEEEEEecCCCCeecceEEEEEC
Confidence 888888876553 677776
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.05 E-value=8.8 Score=42.52 Aligned_cols=149 Identities=15% Similarity=0.105 Sum_probs=87.4
Q ss_pred ccchhHHHHHHhhhcccHHHHHHHHHHHHHHhhccCcchhhHhhhcCchhHHHHHHhcCCchhHHHHHHHHHHHhccccc
Q 001349 442 VSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRT 521 (1094)
Q Consensus 442 ~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~el~~~~r~~ 521 (1094)
......+.++..+......-|..|+..|..+++..|..- +...-++.+..++.+.+-..|..++..+..+...-..
T Consensus 438 ~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~~---~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~- 513 (588)
T d1b3ua_ 438 FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW---AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ- 513 (588)
T ss_dssp CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHH---HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcHH---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCh-
Confidence 334456788888888888889998888877766544321 1112223344444445555666666666655432110
Q ss_pred hhHHHHHHhhhcCcchhHHHHHHHHhhcCCccchhHHHHHHhhhcccCCCCCCccHHHHHHHHHHHhhcCCChHHHHHHH
Q 001349 522 FNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAA 601 (1094)
Q Consensus 522 ~~~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~l~~l~~~~~~~~~~~~reea~~~~~~~l~~~~~~~~~~~~~ 601 (1094)
.. +.+ ..+-.++.++...-|.=|..+|..|.++--..++ ..+ ...+..++..|.+.....|+..|.
T Consensus 514 ---~~---~~~----~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~---~~~-~~~i~~~l~~L~~D~d~dVr~~A~ 579 (588)
T d1b3ua_ 514 ---DI---TTK----HMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN---STL-QSEVKPILEKLTQDQDVDVKYFAQ 579 (588)
T ss_dssp ---HH---HHH----HTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH---HHH-HHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred ---HH---HHH----HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCc---HhH-HHHHHHHHHHHcCCCCHHHHHHHH
Confidence 00 011 1344455555554455566788888888654433 222 345566666676666678999999
Q ss_pred HHHHhcc
Q 001349 602 KTIVSLQ 608 (1094)
Q Consensus 602 ~~~~~l~ 608 (1094)
.|+-.|+
T Consensus 580 ~al~~l~ 586 (588)
T d1b3ua_ 580 EALTVLS 586 (588)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 9987664
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=81.15 E-value=22 Score=34.91 Aligned_cols=227 Identities=15% Similarity=0.073 Sum_probs=108.3
Q ss_pred CeEEEeCC---cceeecccCCCcEEEEEEeCCEEEEEECCCeEEEEecCCCcceeEEEecccCCCeEEEEEecCCCEEEE
Q 001349 796 SADFWNHR---ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYS 872 (1094)
Q Consensus 796 ~I~vWd~~---~~~~~~~~h~~~V~~l~fspd~LaSgs~Dg~I~vWd~~t~~~~~~~~l~~H~~~V~sv~fspdg~~LaS 872 (1094)
+|..|-.. ....+.......|..|+.-....+.-. ||.|..|-..... .+..-......|..|+.- +...++.
T Consensus 5 sv~~WG~~~~~~~~~~~~~~~~~i~~va~G~~h~~al~-dG~v~~wG~N~~G--QlG~~~~~~~~v~~v~~G-~~~~~al 80 (273)
T d1jtdb_ 5 SVVAWGGNNDWGEATVPAEAQSGVDAIAGGYFHGLALK-GGKVLGWGANLNG--QLTMPAATQSGVDAIAAG-NYHSLAL 80 (273)
T ss_dssp EEEEESSCCSSSTTCCCGGGSSSEEEEEECSSEEEEEE-TTEEEEEECCTTS--TTSCCGGGGSCCCEEEEC-SSEEEEE
T ss_pred EEEEECCCCCCCceeccccCCCCcEEEEccCCEEEEEE-CCEEEEEeCCCCC--ceeeeecccccceEEecC-CCceeee
Confidence 56667533 112222334557889988766554445 8999999665431 111112223445555532 2223332
Q ss_pred EeCCCcEEEEECCCCceEEEEecccCccceeeeecCceEEEeeCCCeEEEEEeCCeEEEEcCC------------CCceE
Q 001349 873 GSLDKTARVWSIGNEEIHCVQVHDIKDQIQNLAVSNSILCFIPQGAGIKVHLRNGKTKLLNSS------------KYPKC 940 (1094)
Q Consensus 873 gs~DgtI~vWdi~~~~~~~~~~~~~~~~V~~v~~~~~~~~fspdg~~l~~~~~~g~i~l~~~~------------~~v~~ 940 (1094)
.||++..|.....-.... .......+..+..... .. ....++.+..|... ..+..
T Consensus 81 --~dg~v~~wG~~~~gq~~~-~~~~~~~~~~i~~~~~---------~~-~~~~dg~v~~~g~~~~~~~~~~~~~~~~v~~ 147 (273)
T d1jtdb_ 81 --KDGEVIAWGGNEDGQTTV-PAEARSGVDAIAAGAW---------AS-YALKDGKVIAWGDDSDGQTTVPAEAQSGVTA 147 (273)
T ss_dssp --ETTEEEEEECCTTSTTCC-CGGGGSSCCEEEEETT---------EE-EEEETTEEEEEECCTTSTTSCCGGGGSSEEE
T ss_pred --eeeeeeccCCCcceeecc-ccccccceeEEeeecc---------cc-cccccccceecccCCCCceeeeccCCceEEE
Confidence 489999998644210000 0111222333321111 11 12235666666421 22333
Q ss_pred EEEeCCEEEEEEcCCeEEEEECCCCceeEEeccceeecCCCCCeEEEEEeCCccEEEEEECCCCEEEEEECCC-CeEEEE
Q 001349 941 LALVQGKVYCGCQDGAIQEIDLATGTFATIQTGHRKLLGKANPVHALQVHNGLVYTASTSLDGAAVKMWSTSN-YNMVGS 1019 (1094)
Q Consensus 941 l~~s~~~l~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~h~~~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~-~~~~~~ 1019 (1094)
+.-.... .....++.+..|........ .........|..|+.......+ -. || .|.-|=... ++.-..
T Consensus 148 ~~~~~~~-~~~~~~g~~~~~G~~~~g~~------~~~~~~~~~v~~Is~G~~h~~~--l~-dG-~v~~WG~n~~Gql~~~ 216 (273)
T d1jtdb_ 148 LDGGVYT-ALAVKNGGVIAWGDNYFGQT------TVPAEAQSGVDDVAGGIFHSLA--LK-DG-KVIAWGDNRYKQTTVP 216 (273)
T ss_dssp EEECSSE-EEEEETTEEEEEECCTTSTT------SCCGGGSSSEEEEEECSSEEEE--EE-TT-EEEEEECCTTSTTCCC
T ss_pred Eecccee-eeeecccceeEeecccCCcc------cccccccCCccceeccceeeEE--Ee-cC-cEEEcCCCCCCccCCC
Confidence 3333333 33445788888865433221 1111223467777665444332 23 65 888885433 222111
Q ss_pred ecCCCCEEEEEEeCCEEEEEEcCCeEEEEECC
Q 001349 1020 LPTLSEVRAMVVSSELVYLGCKGGTVEIWDQK 1051 (1094)
Q Consensus 1020 ~~~~~~v~~l~~spd~l~sgs~dg~I~vwd~~ 1051 (1094)
......|..++-...+.+.- .||.|+.|-..
T Consensus 217 ~~~~~~v~~I~~G~~~~~~l-~~g~v~~WG~~ 247 (273)
T d1jtdb_ 217 TEALSGVSAIASGEWYSLAL-KNGKVIAWGSS 247 (273)
T ss_dssp GGGGSSCCEEEECSSCEEEE-ETTEEEEESTT
T ss_pred ccCCCCcEEEEeCcceEEEE-ECCEEEEECCC
Confidence 22234566676655533322 48999999543
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=81.05 E-value=33 Score=35.20 Aligned_cols=110 Identities=11% Similarity=0.185 Sum_probs=69.0
Q ss_pred CeEEEEE--eC-Ccc-EEEEEECCCCEEEEEECC---CC----eEEEEecCCCCEEEEEEeCC--EEEEEEcCCeEEEEE
Q 001349 983 PVHALQV--HN-GLV-YTASTSLDGAAVKMWSTS---NY----NMVGSLPTLSEVRAMVVSSE--LVYLGCKGGTVEIWD 1049 (1094)
Q Consensus 983 ~V~sl~f--s~-~~~-~las~s~Dg~~I~iwd~~---~~----~~~~~~~~~~~v~~l~~spd--~l~sgs~dg~I~vwd 1049 (1094)
.++.+++ ++ ++. +++....+| .+..|.+. ++ +.++++.....+.++.++.. .|+.+-++.-|..++
T Consensus 129 ~vYGlc~y~~~~~g~~~afv~~k~G-~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~LyisEE~~Giw~~~ 207 (353)
T d1h6la_ 129 EVYGFSLYHSQKTGKYYAMVTGKEG-EFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYIAEEDEAIWKFS 207 (353)
T ss_dssp SCCCEEEEECTTTCCEEEEEECSSS-EEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred cceEEEEEecCCCCeEEEEEEcCCc-eEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEEecCccceEEEE
Confidence 4667777 43 343 455555554 88887662 33 46677777888999999987 899998887776666
Q ss_pred CC-----CCcEEEEeccc-CCcceEEEEEcC--CCC-E-EEEEeCCCcEEEEeC
Q 001349 1050 QK-----RQIRIETLQTG-TSGKVQCMALDD--NEE-F-LVIGTSDGRIQAWGL 1093 (1094)
Q Consensus 1050 ~~-----t~~~~~~l~~~-h~~~I~~l~~Sp--dg~-~-L~sgs~DG~I~iWdl 1093 (1094)
.. .+..+.....+ ..+.+-.++.-. ++. + |+|.-.+++..|||.
T Consensus 208 a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr 261 (353)
T d1h6la_ 208 AEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYER 261 (353)
T ss_dssp SSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred eccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEec
Confidence 53 22333333222 345778887643 333 4 445445778888874
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.13 E-value=19 Score=37.64 Aligned_cols=99 Identities=9% Similarity=0.003 Sum_probs=68.5
Q ss_pred CeEEEEEeCCccEEEEEECCCCEEEEEECCCCeEEEEec-CCCCEEEEEEeCCEEEEEEcCCeEEEEECCCCcEEEEecc
Q 001349 983 PVHALQVHNGLVYTASTSLDGAAVKMWSTSNYNMVGSLP-TLSEVRAMVVSSELVYLGCKGGTVEIWDQKRQIRIETLQT 1061 (1094)
Q Consensus 983 ~V~sl~fs~~~~~las~s~Dg~~I~iwd~~~~~~~~~~~-~~~~v~~l~~spd~l~sgs~dg~I~vwd~~t~~~~~~l~~ 1061 (1094)
.|..++|+.+...+. . + +.+..++...-....... -...+..+.+.|..++....+|.+.++++..++.......
T Consensus 88 ~v~~vafs~d~l~v~--~-~-~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~~~~ 163 (381)
T d1xipa_ 88 DVIFVCFHGDQVLVS--T-R-NALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLAQN 163 (381)
T ss_dssp TEEEEEEETTEEEEE--E-S-SEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEES
T ss_pred CeEEEEeeCCEEEEE--e-C-CCEEEEEeeccccccccccccccccceecCCceeEEEecCCCEEEEEeccCccccccCC
Confidence 688899987753332 2 2 368888877643333322 3567889999999888888999999999998864332210
Q ss_pred ----cCCcceEEEEEcCCCCEEEEEeCC
Q 001349 1062 ----GTSGKVQCMALDDNEEFLVIGTSD 1085 (1094)
Q Consensus 1062 ----~h~~~I~~l~~Spdg~~L~sgs~D 1085 (1094)
.-.+.+.+++|++.|+.++++..+
T Consensus 164 v~~~~~~~~~~~v~ws~kgkq~v~~~g~ 191 (381)
T d1xipa_ 164 VTSFDVTNSQLAVLLKDRSFQSFAWRNG 191 (381)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEEEETT
T ss_pred cceEEecCCceEEEEeCCcEEEEEeCCC
Confidence 113468899999999888887543
|