Citrus Sinensis ID: 001374

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090-
MDRRSWPWKKKSSSEKAEKAAAATLDSVLAASASAGSQGEQDNYKKPKYVQISVESYSHLTGLENQVKTNEEQVQTMEEQIKELNEKLSAANSEISAKEDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKMEVESLGRDYGDSRLKRSPVKPTSPHLSPVSEFSLDNVQKFQKENEFLTERLLAMEEETKMLKEALAKRNSELQASRNLCAKTASKLQSLEAQMQTSTQQKSPTKSVVQIAAEGYTSQNASNPPSLTSMSEDDNDDKVSCADSWATALISELSQIKKEKNVEKSNKAETPKHLELMDDFLEMEKLACLSNDTNSNGTITASNGPNNKTSDIVNHDASGAVTSGEDLLSEQQRDMNPSVDKLSSNTQSSTVNPEADAGQPQLMKLRSRISMLLETISKDADMGKIVEDIKRVVEDEHVTLHQHSANCISDEVKCSDVSCSAEAYPGDASLNTERKIDLTVQVISQELVAAITQIHDFVLFLGKEARAVHDTTNENGFSQKIEEFYVSFNKVIDSNTYLVDFVFALSNVLAKASELRINVMGYKDTEIEPNSPDCIDKVALPENKVIKKDTSGERYPNGCAHISNPTSDPEVPDDGSIVAAYESETTACKFSLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSSEADENKIKQDRDLAAAAERLAECQETILLLGKQLKSLRPQSEVIGSPYSERSQKGEFLPGEPATASLQEFDHAEMDSVTSANAQPHRVGAESPLDLYTSPCSPSENEASINKSPINSKHPKHRPTKSTSSSSTSAPTPEKSSRGFSRFFSSKGRNGH
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHcccHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcccccHHccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccccEEcccccccccccccccccccccccccccccccccccccccEEEcccccccccccHcHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEccccccccccccccccccccccccHHHcccccHHHccccccHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHcccHHHHHccHHHcHHHHHHccccEEEcEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcHcccccccccccccccccHEEccHccEEEccccccHcccccccccccccccccccccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHEcccccccc
mdrrswpwkkksssEKAEKAAAATLDSVLAASasagsqgeqdnykkpkyvQISVESYSHLTGLENQVKTNEEQVQTMEEQIKELNEKLSAANSEISAKEDLVKQHTKVAEEAVSGWEKAEAEALALKNHLesvtlsklTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLvrkklpgpaaLAQMKMEVESLgrdygdsrlkrspvkptsphlspvsefsLDNVQKFQKENEFLTERLLAMEEETKMLKEALAKRNSELQASRNLCAKTASKLQSLEAQMqtstqqksptkSVVQIAAEgytsqnasnppsltsmseddnddkvscADSWATALISELSQIKKeknveksnkaetpkHLELMDDFLEMEKLAClsndtnsngtitasngpnnktsdivnhdasgavtsgedllseqqrdmnpsvdklssntqsstvnpeadagqpqLMKLRSRISMLLETISKDADMGKIVEDIKRVVEDEHVTLHQhsancisdevkcsdvscsaeaypgdaslnterkIDLTVQVISQELVAAITQIHDFVLFLGKEARavhdttnengfsQKIEEFYVSFNkvidsntyLVDFVFALSNVLAKASELRINVmgykdteiepnspdcidkvalpenkvikkdtsgerypngcahisnptsdpevpddgsivaAYESETTACKFSLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQrnencavcsseadenkiKQDRDLAAAAERLAECQETILLLGKQLkslrpqsevigspysersqkgeflpgepataslqefdhaemdsvtsanaqphrvgaespldlytspcspseneasinkspinskhpkhrptkstsssstsaptpekssrgfsrffsskgrngh
mdrrswpwkkksssekAEKAAAATLDSVLAASAsagsqgeqdnykKPKYVQISVESYSHLTGLENQVKTNEEQVQTMEEQIKELNEKLSAANSEISAKEDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAaenatlsrslQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLvrkklpgpaaLAQMKMEVESLGrdygdsrlkrspvkptsphlspvsefslDNVQKFQKENEFLTERLLAMEEETKMLKEALAKRNSELQASRNLCAKTASKLQSLEAQMqtstqqksptkSVVQIAAEgytsqnasnppslTSMSEDDNDDKVSCADSWATALISElsqikkeknveksnkaetpkHLELMDDFLEMEKLACLSNDTNSNGTITASNGPNNKTSDIVNHDASGAVTSGEDLLSEQQRDMNpsvdklssntqsstvnpeadagqpqlMKLRSRISMLLEtiskdadmgkIVEDIKRVVEDEHVTLHqhsancisdevKCSDVSCSAEAypgdaslnteRKIDLTVQVISQELVAAITQIHDFVLFLGKEARAVHDTTNENGFSQKIEEFYVSFNKVIDSNTYLVDFVFALSNVLAKASELRINVMGykdteiepnspdcidkvalpeNKVIkkdtsgerypngcahisnptsdpevPDDGSIVAAYESETTACKFSLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSSEADENKIKQDRDLAAAAERLAECQETILLLgkqlkslrpqsevigspysersqkgeFLPGEPATASLQEFDHAEMDSVTSANAQPHRVGAESPLDLYTSPCSPSENEasinkspinskhpkhrptkstsssstsaptpekssrgfsrffsskgrngh
MDRRSWPWkkksssekaekaaaatldsvlaasasagsQGEQDNYKKPKYVQISVESYSHLTGLENQVKTNEEQVQTMEEQIKELNEKLSAANSEISAKEDLVKQHTKVAEEAVSGWekaeaealalkNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKMEVESLGRDYGDSRLKRSPVKPTSPHLSPVSEFSLDNVQKFQKENEFLTERLLAMEEETKMLKEALAKRNSELQASRNLCAKTASKLQSLEAQMQTSTQQKSPTKSVVQIAAEGYTSQNASNPPSLTSMSEDDNDDKVSCADSWATALISELSQIKKEKNVEKSNKAETPKHLELMDDFLEMEKLACLSNDTNSNGTITASNGPNNKTSDIVNHDASGAVTSGEDLLSEQQRDMNPSVDKLSSNTQSSTVNPEADAGQPQLMKLRSRISMLLETISKDADMGKIVEDIKRVVEDEHVTLHQHSANCISDEVKCSDVSCSAEAYPGDASLNTERKIDLTVQVISQELVAAITQIHDFVLFLGKEARAVHDTTNENGFSQKIEEFYVSFNKVIDSNTYLVDFVFALSNVLAKASELRINVMGYKDTEIEPNSPDCIDKVALPENKVIKKDTSGERYPNGCAHISNPTSDPEVPDDGSIVAAYESETTACkfsleefeelklekDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSSEADENKIKQdrdlaaaaerlaeCQETILLLGKQLKSLRPQSEVIGSPYSERSQKGEFLPGEPATASLQEFDHAEMDSVTSANAQPHRVGAESPLDLYTSPCSPSENEASINKSPINSKHpkhrptkstsssstsaptpekssrgfsrffsskgrNGH
**************************************************************************************************************************ALALKNHLESVTLSKLT****AAHLDGALKECMRQIRNL*****QKLQDFVLTKTKQWDKIRLEFEAKIANFEQELL***********************************LLKGNIEQCEREINSAKYELHIV**************************************C*RLRGL**************************************************************************************************************************************************************WATALI***********************************************************************************************************************SMLLETISKDADMGKIVEDIKRVVEDEHVTLHQHSANCISDEVKCSDVSCSAEAYPGDASLNTERKIDLTVQVISQELVAAITQIHDFVLFLGKEARAVHDTTNENGFSQKIEEFYVSFNKVIDSNTYLVDFVFALSNVLAKASELRINVMGYKDTEI******CIDKVA**************************************VAAYESETTACKFSLEEFEELKLEKDNLATDLARCTENLE*****LY****************************************************************************************************************RLAECQETILLLGK*****************************************************************************************************************************
*DRRSWPW********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************SK*****
**********************ATLDSVLA**************KKPKYVQISVESYSHLTGLENQVKTNEEQVQTMEEQIKELNEKLSAANSEISAKEDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEK***************EGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKMEVESLGRDYGDSR**************PVSEFSLDNVQKFQKENEFLTERLLAMEEETKMLKEALAKRNSELQASRNLCAKTASKLQSL*****************VQIAAEGYTSQNA*****************VSCADSWATALISELSQIKK*********AETPKHLELMDDFLEMEKLACLSNDTNSNGTITASNGPNNKTSDIVNHDASGAVTSGEDLLSEQQR************************GQPQLMKLRSRISMLLETISKDADMGKIVEDIKRVVEDEHVTLHQHSANCISDEVKCSDVSCSAEAYPGDASLNTERKIDLTVQVISQELVAAITQIHDFVLFLGKEARAVHDTTNENGFSQKIEEFYVSFNKVIDSNTYLVDFVFALSNVLAKASELRINVMGYKDTEIEPNSPDCIDKVALPENKVIKKDTSGERYPNGCAHISNPTSDPEVPDDGSIVAAYESETTACKFSLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSSEADENKIKQDRDLAAAAERLAECQETILLLGKQLKSLRPQSEVIGSPYSERSQKGEFLPGEPATASLQEFDHAEMDSVTSANAQPHRVGAESPLDLYTS**********INKSPI*****************************FSRFF********
*********************************************KPKYVQISVESYSHLTGLENQVKTNEEQVQTMEEQIKELNEKLSAANSEISAKEDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKME********************************LDNVQKFQKENEFLTERLLAMEEETKMLKEALAKRNSELQASRNLCAKTASKLQSLEAQMQTSTQ***************************************************ELSQIKKEK************HLELMDDFLEMEKLACLS******************************************************************AGQPQLMKLRSRISMLLETISKDADMGKIVEDIKRVVEDEHVTLHQHSANCI**EVKCSDVSCSAEAYPGDASLNTERKIDLTVQVISQELVAAITQIHDFVLFLGKEARAVHDTTNENGFSQKIEEFYVSFNKVIDSNTYLVDFVFALSNVLAKASELRINVMGYKDTEIEPNSPDCIDKVALPENKVIKKDT****************SDPEVPDD*S*VAAYESETTACKFSLEEFEELKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSS*ADENKIKQDRDLAAAAERLAECQETILLLGKQLKSLRPQ**V******************************************************************************************************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MDRRSWPWKKKSSSEKAEKAAAATLDSVLAASASAGSQGEQDNYKKPKYVQISVESYSHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCQRLRGLVRKKLPGPAALAQMKMEVESLGRDYGDSRLKRSPVKPTSPHLSPVSEFSLDNxxxxxxxxxxxxxxxxxxxxxxxxxxxxLAKRNSExxxxxxxxxxxxxxxxxxxxxxxxxxxxKSPTKSVVQIAAEGYTSQNASNPPSLTSMSEDDNDDKVSCADSWATALISELSQIKKEKNVEKSNKAETPKHLELMDDFLEMEKLACLSNDTNSNGTITASNGPNNKTSDIVNHDASGAVTSGEDLLSEQQRDMNPSVDKLSSNTQSSTVNPEADAGQPQLMKLRSRISMLLETISKDADMGKIVEDIKRVVEDEHVTLHQHSANCISDEVKCSDVSCSAEAYPGDASLNTERKIDLTVQVISQELVAAITQIHDFVLFLGKEARAVHDTTNENGFSQKIEEFYVSFNKVIDSNTYLVDFVFALSNVLAKASELRINVMGYKDTEIEPNSPDCIDKVALPENKVIKKDTSGERYPNGCAHISNPTSDPEVPDDGSIVAAYESETTACKFSLEExxxxxxxxxxxxxxxxxxxxxLEMTKSQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAVCSSEADENKIKQDRDLAAAAERLAECQETILLLGKQLKSLRPQSEVIGSPYSERSQKGEFLPGEPATASLQEFDHAEMDSVTSANAQPHRVGAESPLDLYTSPCSPSENEASINKSPINSKHPKHRPTKSTSSSSTSAPTPEKSSRGFSRFFSSKGRNGH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1091 2.2.26 [Sep-21-2011]
Q0WSY2982 Filament-like plant prote yes no 0.885 0.983 0.555 0.0
Q9C6981054 Filament-like plant prote no no 0.913 0.945 0.516 0.0
O65649996 Filament-like plant prote no no 0.450 0.493 0.530 1e-136
Q9SLN1898 Filament-like plant prote no no 0.387 0.471 0.364 4e-70
Q9MA92615 Filament-like plant prote no no 0.233 0.414 0.395 2e-39
Q9CAP9779 Filament-like plant prote no no 0.180 0.252 0.411 1e-34
Q8LLE5582 Filament-like plant prote N/A no 0.169 0.317 0.380 1e-29
Q9SFF4629 Filament-like plant prote no no 0.153 0.267 0.352 5e-26
>sp|Q0WSY2|FPP4_ARATH Filament-like plant protein 4 OS=Arabidopsis thaliana GN=FPP4 PE=2 SV=1 Back     alignment and function desciption
 Score = 1051 bits (2718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 613/1104 (55%), Positives = 763/1104 (69%), Gaps = 138/1104 (12%)

Query: 1    MDRRSWPWKKKSSSEKAEKAAAATLDSVLAASASAGSQGEQDNYKKPKYVQISVESYSHL 60
            MDR+SWPWKKKSS +       AT+  V+          +Q+N KKP Y+QIS + Y++L
Sbjct: 1    MDRKSWPWKKKSSEK------TATVTEVV----------DQENGKKPSYIQISFDQYTNL 44

Query: 61   TGLENQVKTNEEQVQTMEEQIKELNEKLSAANSEISAKEDLVKQHTKVAEEAVSGWEKAE 120
             GL+++VK+ EE+V  +E+QIK+L+ KLS AN++I AKE LVKQH+KVAEEAV+GWEKAE
Sbjct: 45   NGLKDEVKSYEEKVTKLEDQIKDLDLKLSTANADIVAKEVLVKQHSKVAEEAVTGWEKAE 104

Query: 121  AEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQW 180
            AEA ALK HLE++TL+KLT EDRAAHLDGALKECMRQIR+LKEE+EQKL D + TKT Q 
Sbjct: 105  AEASALKTHLETITLAKLTVEDRAAHLDGALKECMRQIRSLKEENEQKLHDVIATKTNQM 164

Query: 181  DKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNI 240
            D +R EFE++I  +E+ELLR  AEN  LSRSLQERSNML++ISEEKSQAE+EIE LK NI
Sbjct: 165  DNLRAEFESRIGEYEEELLRCGAENDALSRSLQERSNMLMRISEEKSQAESEIEHLKNNI 224

Query: 241  EQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLR 300
            E CEREIN+ KYE H+++KELEIRNEEKNMSMRSAEAANKQH+EGVKKIAKLEAECQRLR
Sbjct: 225  ESCEREINTLKYETHVITKELEIRNEEKNMSMRSAEAANKQHLEGVKKIAKLEAECQRLR 284

Query: 301  GLVRKKLPGPAALAQMKMEVESLGRDYG----DSRLKRSPVKPTSP------HLSPVSEF 350
             LVRKKLPGPAALAQMKMEVESLG  +G    D R +RSPV+P+SP      H+S VSEF
Sbjct: 285  TLVRKKLPGPAALAQMKMEVESLG--FGDHRQDHRQRRSPVRPSSPLMSPMSHMSQVSEF 342

Query: 351  SLDNVQKFQKENEFLTERLLAMEEETKMLKEALAKRNSELQASRNLCAKTASKLQSLEAQ 410
            SLDN+QKF KEN+ LTERLLAMEEETKMLKEALAKRNSELQ SRNLCAKTA++LQ+LEAQ
Sbjct: 343  SLDNMQKFHKENDLLTERLLAMEEETKMLKEALAKRNSELQVSRNLCAKTANRLQTLEAQ 402

Query: 411  MQTSTQQKSPTKSVVQIAAEGYTSQNASNPPSLTSMSEDDNDDKVSCADSWATALISELS 470
            M +    KSPTK   ++ AE ++ QNASNPPS+ SMSED N+D    A S A +L+SELS
Sbjct: 403  MMS----KSPTKRGFEMPAEIFSRQNASNPPSMASMSEDGNED----ARSVAGSLMSELS 454

Query: 471  QIKKEKNVEKSNKAETPKHLELMDDFLEMEKLACLSNDTNSNGTITASNGPNNKTSDIVN 530
            Q  K+K   K  K E+   LELMDDFLEMEKLACL N +N+NG+                
Sbjct: 455  QSNKDKANAKIKKTESANQLELMDDFLEMEKLACLPNGSNANGST--------------- 499

Query: 531  HDASGAVTSGEDLLSEQQRDMNPSVDKLSSNTQSSTVNPEADAGQPQLMKLRSRISMLLE 590
             D S A                                 ++DA  P   +L+ RIS +L+
Sbjct: 500  -DHSSA---------------------------------DSDAEIPPATQLKKRISNVLQ 525

Query: 591  TISKDADMGKIVEDIKRVVEDEHVTL----HQHSANCISDEVKCSDVSCSAEAYPGDASL 646
            ++ KDA   KI+ +I+  V+D  V L    H  + N +++E     ++ S E        
Sbjct: 526  SLPKDAAFEKILAEIQCAVKDAGVKLPSKSHGANLNGLTEE---KVIAMSNET------- 575

Query: 647  NTERKIDLTVQVISQELVAAITQIHDFVLFLGKEARAVHDTTNENGFSQKIEEFYVSFNK 706
             TE K+ + V+VI+QEL  A++QI+ FV +L KEA A  +      FSQK++EF  +F  
Sbjct: 576  -TEEKVTI-VEVITQELSDALSQIYQFVTYLSKEATACSENRT---FSQKVQEFSTTFEG 630

Query: 707  VIDSNTYLVDFVFALSNVLAKASELRINVMGYKDTEIEPNSPDCIDKVALPENKVIKKDT 766
            V+     LVDF+F LS VL +ASEL+I+V+G+  + +E +SPDCIDKVALPENK ++KD+
Sbjct: 631  VLGKEKTLVDFLFDLSRVLVEASELKIDVLGFHTSTVEIHSPDCIDKVALPENKALQKDS 690

Query: 767  SGERYPNGCAHISNPTSDPEVPDDGSIVAAYESETTACKFSLEEFEELKLEKDNLATDLA 826
            SGE Y NGC+     +SD E+PDD +  + YE +   CKF+ EEFE LKLEK+   ++LA
Sbjct: 691  SGEHYQNGCSQ----SSDSEIPDDCNGTSGYEPKLATCKFTTEEFEGLKLEKEKAESNLA 746

Query: 827  RCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEA 886
             C  +LE TK++L ETE+LLAEVK+ L SAQKSN + ETQLKCM ESYRSLET + ELE 
Sbjct: 747  SCEADLEATKTKLQETEKLLAEVKSDLESAQKSNGMGETQLKCMVESYRSLETRSSELEI 806

Query: 887  EVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQR-NENCAVCSSEADENKIKQDR 945
            E+  L+ KIE+LE+EL DEK +H  A+AKC+ELEEQLQR N+NC  CS   D+ K KQD 
Sbjct: 807  ELTSLKGKIENLEDELHDEKENHREALAKCQELEEQLQRNNQNCPNCSVIEDDPKSKQDN 866

Query: 946  DLAAAAERLAECQETILLLGKQLKSLRPQSE-VIGSPYSERSQKGEFLPGEPATASLQEF 1004
            +LAAAAE+LAECQETILLLGKQLKS+ PQ+E V  SP  E+                Q  
Sbjct: 867  ELAAAAEKLAECQETILLLGKQLKSMCPQTEQVASSPSQEQ----------------QAL 910

Query: 1005 DHAEMDSVTSANAQPHRVGAESPLDLYTSPCSPSENEASINKSPINSKHPKHRPTKSTSS 1064
            +  E +  TS N Q  ++ + S  D      +PS N     KSP+ S   KHR TKS SS
Sbjct: 911  NPEEEEYATSTNPQDSKLSSPSDKD------TPSMNTM---KSPVAS---KHRHTKSNSS 958

Query: 1065 SSTSAPTPEKSSRGFSRFFSSKGR 1088
            SS+S  TPEK SRGFSRFFS+K +
Sbjct: 959  SSSSGLTPEKHSRGFSRFFSTKAK 982

Arabidopsis thaliana (taxid: 3702)
>sp|Q9C698|FPP6_ARATH Filament-like plant protein 6 OS=Arabidopsis thaliana GN=FPP6 PE=2 SV=1 Back     alignment and function description
>sp|O65649|FPP5_ARATH Filament-like plant protein 5 OS=Arabidopsis thaliana GN=FPP5 PE=2 SV=2 Back     alignment and function description
>sp|Q9SLN1|FPP7_ARATH Filament-like plant protein 7 OS=Arabidopsis thaliana GN=FPP7 PE=3 SV=2 Back     alignment and function description
>sp|Q9MA92|FPP3_ARATH Filament-like plant protein 3 OS=Arabidopsis thaliana GN=FPP3 PE=2 SV=2 Back     alignment and function description
>sp|Q9CAP9|FPP1_ARATH Filament-like plant protein 1 OS=Arabidopsis thaliana GN=FPP1 PE=2 SV=1 Back     alignment and function description
>sp|Q8LLE5|FPP_SOLLC Filament-like plant protein (Fragment) OS=Solanum lycopersicum GN=FPP PE=1 SV=1 Back     alignment and function description
>sp|Q9SFF4|FPP2_ARATH Filament-like plant protein 2 OS=Arabidopsis thaliana GN=FPP2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1091
2555388941041 Myosin heavy chain, striated muscle, put 0.941 0.986 0.706 0.0
1477900371085 hypothetical protein VITISV_000522 [Viti 0.978 0.983 0.682 0.0
2240659391082 predicted protein [Populus trichocarpa] 0.978 0.987 0.693 0.0
3594927261040 PREDICTED: filament-like plant protein 4 0.936 0.982 0.669 0.0
4494372241078 PREDICTED: filament-like plant protein 4 0.971 0.983 0.666 0.0
4495236881084 PREDICTED: LOW QUALITY PROTEIN: filament 0.971 0.977 0.665 0.0
302142632993 unnamed protein product [Vitis vinifera] 0.895 0.983 0.653 0.0
224082984970 predicted protein [Populus trichocarpa] 0.876 0.985 0.679 0.0
3565643491076 PREDICTED: filament-like plant protein 6 0.974 0.987 0.646 0.0
3565096541038 PREDICTED: filament-like plant protein 4 0.940 0.988 0.636 0.0
>gi|255538894|ref|XP_002510512.1| Myosin heavy chain, striated muscle, putative [Ricinus communis] gi|223551213|gb|EEF52699.1| Myosin heavy chain, striated muscle, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1479 bits (3829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 781/1105 (70%), Positives = 899/1105 (81%), Gaps = 78/1105 (7%)

Query: 1    MDRRSWPWKKKSSSEKAEKAAAATLDSVLAASASAGSQGEQDNYKKPKYVQISVESYSHL 60
            MDRRSWPWKKKSS +K EKAA AT      + AS+GSQ ++DNYKKP YVQISVESY+HL
Sbjct: 1    MDRRSWPWKKKSS-DKTEKAAVATDSGGGGSLASSGSQADKDNYKKPNYVQISVESYTHL 59

Query: 61   TGLENQVKTNEEQVQTMEEQIKELNEKLSAANSEISAKEDLVKQHTKVAEEAVSGWEKAE 120
            TGLE+QVKT E+QVQT+E+QI ELNEKLSAANSE++ KE+LVKQH KVAEEAVSGWEKAE
Sbjct: 60   TGLEDQVKTYEQQVQTLEDQINELNEKLSAANSEMTTKENLVKQHAKVAEEAVSGWEKAE 119

Query: 121  AEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQW 180
            AEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQD VLTK KQ 
Sbjct: 120  AEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDVVLTKIKQC 179

Query: 181  DKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNI 240
            DKI+LE EAK+AN +QELLRSAAENA LSRSLQERSNMLIKISE KSQAEAEIELLK NI
Sbjct: 180  DKIKLELEAKMANLDQELLRSAAENAALSRSLQERSNMLIKISEGKSQAEAEIELLKSNI 239

Query: 241  EQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLR 300
            E CEREINS KYELHI+SKELEIRNEEKNMSMRSAE ANKQHMEGVKKIAKLEAECQRLR
Sbjct: 240  ESCEREINSHKYELHIISKELEIRNEEKNMSMRSAEVANKQHMEGVKKIAKLEAECQRLR 299

Query: 301  GLVRKKLPGPAALAQMKMEVESLGRDYGDSRLKRSPVKPTSPHLSPVSEFSLDNVQKFQK 360
            GLVRKKLPGPAALAQMK+EVESLGRD GDSRL+RSPVKP SPHLS V EFSLDN QKF K
Sbjct: 300  GLVRKKLPGPAALAQMKLEVESLGRDCGDSRLRRSPVKPPSPHLSAVPEFSLDNAQKFHK 359

Query: 361  ENEFLTERLLAMEEETKMLKEALAKRNSELQASRNLCAKTASKLQSLEAQMQTSTQQKSP 420
            ENEFLTERLLAMEEETKMLKEALAKRNSELQASRNLCAKTAS+LQSLEAQ+  S QQKS 
Sbjct: 360  ENEFLTERLLAMEEETKMLKEALAKRNSELQASRNLCAKTASRLQSLEAQV--SNQQKSS 417

Query: 421  TKSVVQIAAEGYTSQNASNPPSLTSMSEDDNDDKVSCADSWATALISELSQIKKEKNVEK 480
              SVVQ+  EGY+SQN SNPPSLTSMSED NDD  SCADSWAT+LISELSQ+KKEK+ EK
Sbjct: 418  PTSVVQVPIEGYSSQNMSNPPSLTSMSEDGNDDDRSCADSWATSLISELSQLKKEKSTEK 477

Query: 481  SNKAETPKHLELMDDFLEMEKLACLSNDTNSNGTITASNGPNNKTSDIVNHDASGAVTSG 540
             NK +  +HLELMDDFLEMEKLACL+ + N   +++A+N              SG     
Sbjct: 478  LNKTKNTQHLELMDDFLEMEKLACLNANVNLVSSMSAAN--------------SG----- 518

Query: 541  EDLLSEQQRDMNPSVDKLSSNTQSSTVNPEADAGQPQLMKLRSRISMLLETISKDADMGK 600
                                          ++A QP L+KLRSRISMLLE+IS+DADMGK
Sbjct: 519  ------------------------------SEADQPCLVKLRSRISMLLESISQDADMGK 548

Query: 601  IVEDIKRVVEDEHVTLHQHSANCISDEVKCSDVSCSAEAYPGDASLNTERKIDL------ 654
            I+ED++R+V+D H      + + +S++V+ +D +C     P  AS+  +++I L      
Sbjct: 549  ILEDVQRIVQDTH-----GAVSSVSEDVRATDATC-----PEYASITGDKEITLFQDTNA 598

Query: 655  ---TVQVISQELVAAITQIHDFVLFLGKEARAVHDTTNENG-FSQKIEEFYVSFNKVIDS 710
               TV+ ++QEL  A++ IHDFVLFLGKEA AVHDT+++    SQKIE F V+FNKV++ 
Sbjct: 599  ATDTVRSVNQELATAVSSIHDFVLFLGKEAMAVHDTSSDGSDLSQKIEHFSVTFNKVLNG 658

Query: 711  NTYLVDFVFALSNVLAKASELRINVMGYKDTEIEPNSPDCIDKVALPENKVIKKDTSGER 770
            NT L+DF+F LS VLAKASELR NV+GYK +E E NS DCIDKVALPENKV+++D+SGE 
Sbjct: 659  NTSLIDFIFYLSCVLAKASELRFNVLGYKGSEAEINSSDCIDKVALPENKVLQRDSSGES 718

Query: 771  YPNGCAHISNPTSDPEVPDDGSIVAAYESETTACKFSLEEFEELKLEKDNLATDLARCTE 830
            Y N CAHIS+PTS+PEVPDDGS+V+ Y S TT CK SLEEFEELK EK+N+A DLARCTE
Sbjct: 719  YQNSCAHISSPTSNPEVPDDGSLVSGYGSNTTLCKVSLEEFEELKSEKNNVALDLARCTE 778

Query: 831  NLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNL 890
            NLEMTKSQL+ETEQLLAE K+QLASAQKSNSLAETQLKCMAESYRSLE  A+ELE EVNL
Sbjct: 779  NLEMTKSQLHETEQLLAEAKSQLASAQKSNSLAETQLKCMAESYRSLEARAEELETEVNL 838

Query: 891  LRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCSSEAD-ENKIKQDRDLAA 949
            L+AK E+LENELQDEK  H +A+++ KELEEQLQ  E+C+VCS+ AD ENK  QDR+LAA
Sbjct: 839  LQAKAETLENELQDEKQCHWDALSRSKELEEQLQTKESCSVCSAAADAENKANQDRELAA 898

Query: 950  AAERLAECQETILLLGKQLKSLRPQSEVIGSPYSERSQKGE-FLPGEPATA--SLQEFDH 1006
            AAE+LAECQETI LLGKQLK+LRPQ+E++GS YSERS+KG+ F   EP T+  +LQ+FD 
Sbjct: 899  AAEKLAECQETIFLLGKQLKALRPQTELMGSAYSERSRKGDGFAEDEPTTSGMNLQDFDQ 958

Query: 1007 AEMDSVTSANAQPHRVGAESPLDLYTSPCSPSENEASINKSPINSKHPKHRPTKSTSSSS 1066
            AEMD++ S N   HR GAESP+DLY  PCSPS+ E+++++SP+NSK PKHR TKSTSSSS
Sbjct: 959  AEMDAIVSTNH--HRAGAESPMDLYNQPCSPSDTESNLSRSPLNSKQPKHRSTKSTSSSS 1016

Query: 1067 TSAPTPEKSSRGFSRFFSSKGRNGH 1091
            +   TPEK SRGFSRFFS+KG+NG+
Sbjct: 1017 SHMATPEKHSRGFSRFFSAKGKNGN 1041

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147790037|emb|CAN60525.1| hypothetical protein VITISV_000522 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224065939|ref|XP_002301986.1| predicted protein [Populus trichocarpa] gi|222843712|gb|EEE81259.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359492726|ref|XP_002280306.2| PREDICTED: filament-like plant protein 4-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449437224|ref|XP_004136392.1| PREDICTED: filament-like plant protein 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449523688|ref|XP_004168855.1| PREDICTED: LOW QUALITY PROTEIN: filament-like plant protein 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|302142632|emb|CBI19835.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224082984|ref|XP_002306918.1| predicted protein [Populus trichocarpa] gi|222856367|gb|EEE93914.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356564349|ref|XP_003550417.1| PREDICTED: filament-like plant protein 6-like [Glycine max] Back     alignment and taxonomy information
>gi|356509654|ref|XP_003523561.1| PREDICTED: filament-like plant protein 4-like isoform 1 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1091
TAIR|locus:2824556982 AT1G19835 "AT1G19835" [Arabido 0.457 0.508 0.632 3e-170
TAIR|locus:22049901054 AT1G47900 "AT1G47900" [Arabido 0.745 0.771 0.451 1.5e-154
TAIR|locus:2135154996 AT4G36120 "AT4G36120" [Arabido 0.552 0.605 0.436 1.7e-121
TAIR|locus:2204755779 AT1G77580 [Arabidopsis thalian 0.541 0.758 0.219 1.2e-26
TAIR|locus:2090684704 AT3G19370 [Arabidopsis thalian 0.237 0.367 0.279 1.1e-22
UNIPROTKB|E1BRE51411 EEA1 "Uncharacterized protein" 0.392 0.303 0.218 1.7e-15
ZFIN|ZDB-GENE-030131-58701964 myh9a "myosin, heavy polypepti 0.499 0.277 0.229 2.1e-15
TAIR|locus:206104292 AT2G24470 "AT2G24470" [Arabido 0.068 0.815 0.546 7.9e-15
MGI|MGI:102643 1972 Myh11 "myosin, heavy polypepti 0.462 0.256 0.236 1.2e-14
SGD|S0000022161790 USO1 "Protein involved in the 0.783 0.477 0.204 5.3e-14
TAIR|locus:2824556 AT1G19835 "AT1G19835" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1594 (566.2 bits), Expect = 3.0e-170, Sum P(2) = 3.0e-170
 Identities = 336/531 (63%), Positives = 401/531 (75%)

Query:     1 MDRRSWPWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGEQDNYKKPKYVQISVESYSHL 60
             MDR+SWPW                               +Q+N KKP Y+QIS + Y++L
Sbjct:     1 MDRKSWPWKKKSSEKTATVTEVV----------------DQENGKKPSYIQISFDQYTNL 44

Query:    61 TGLENQVKTNEEQVQTMEEQIKELNEKLSAANSEISAKEDLVKQHTKVAEEAVSGWXXXX 120
              GL+++VK+ EE+V  +E+QIK+L+ KLS AN++I AKE LVKQH+KVAEEAV+GW    
Sbjct:    45 NGLKDEVKSYEEKVTKLEDQIKDLDLKLSTANADIVAKEVLVKQHSKVAEEAVTGWEKAE 104

Query:   121 XXXXXXXNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKTKQW 180
                     HLE++TL+KLT EDRAAHLDGALKECMRQIR+LKEE+EQKL D + TKT Q 
Sbjct:   105 AEASALKTHLETITLAKLTVEDRAAHLDGALKECMRQIRSLKEENEQKLHDVIATKTNQM 164

Query:   181 DKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNI 240
             D +R EFE++I  +E+ELLR  AEN  LSRSLQERSNML++ISEEKSQAE+EIE LK NI
Sbjct:   165 DNLRAEFESRIGEYEEELLRCGAENDALSRSLQERSNMLMRISEEKSQAESEIEHLKNNI 224

Query:   241 EQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLR 300
             E CEREIN+ KYE H+++KELEIRNEEKNMSMRSAEAANKQH+EGVKKIAKLEAECQRLR
Sbjct:   225 ESCEREINTLKYETHVITKELEIRNEEKNMSMRSAEAANKQHLEGVKKIAKLEAECQRLR 284

Query:   301 GLVRKKLPGPAALAQMKMEVESLG-RDYG-DSRLKRSPVKPTSP------HLSPVSEFSL 352
              LVRKKLPGPAALAQMKMEVESLG  D+  D R +RSPV+P+SP      H+S VSEFSL
Sbjct:   285 TLVRKKLPGPAALAQMKMEVESLGFGDHRQDHRQRRSPVRPSSPLMSPMSHMSQVSEFSL 344

Query:   353 DNVQKFQKENEFLTERLLAMEEETKMLKEALAKRNSELQASRNLCAKTASKLQSLEAQMQ 412
             DN+QKF KEN+ LTERLLAMEEETKMLKEALAKRNSELQ SRNLCAKTA++LQ+LEAQM 
Sbjct:   345 DNMQKFHKENDLLTERLLAMEEETKMLKEALAKRNSELQVSRNLCAKTANRLQTLEAQMM 404

Query:   413 TSTQQKSPTKSVVQIAAEGYTSQNASNPPSLTSMSEDDNDDKVSCADSWATALISELSQI 472
             +    KSPTK   ++ AE ++ QNASNPPS+ SMSED N+D  S A S    L+SELSQ 
Sbjct:   405 S----KSPTKRGFEMPAEIFSRQNASNPPSMASMSEDGNEDARSVAGS----LMSELSQS 456

Query:   473 KKEKNVEKSNKAETPKHLELMDDFLEMEKLACLSNDTNSNGTITASNGPNN 523
              K+K   K  K E+   LELMDDFLEMEKLACL N +N+NG+   S+  ++
Sbjct:   457 NKDKANAKIKKTESANQLELMDDFLEMEKLACLPNGSNANGSTDHSSADSD 507
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2204990 AT1G47900 "AT1G47900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2135154 AT4G36120 "AT4G36120" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204755 AT1G77580 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090684 AT3G19370 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1BRE5 EEA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5870 myh9a "myosin, heavy polypeptide 9a, non-muscle" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
TAIR|locus:2061042 AT2G24470 "AT2G24470" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:102643 Myh11 "myosin, heavy polypeptide 11, smooth muscle" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
SGD|S000002216 USO1 "Protein involved in the ER to Golgi transport step of secretion" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q0WSY2FPP4_ARATHNo assigned EC number0.55520.88540.9837yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1091
pfam05911767 pfam05911, DUF869, Plant protein of unknown functi 0.0
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-10
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-10
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-09
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 7e-09
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 6e-08
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 9e-08
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-07
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 4e-07
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-06
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-06
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-06
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 3e-06
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 6e-06
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 9e-06
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-05
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 1e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-05
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-05
PRK05771646 PRK05771, PRK05771, V-type ATP synthase subunit I; 3e-05
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 4e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 7e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-04
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-04
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-04
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-04
COG4942420 COG4942, COG4942, Membrane-bound metallopeptidase 2e-04
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 6e-04
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 6e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 8e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 9e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.001
PHA02562562 PHA02562, 46, endonuclease subunit; Provisional 0.001
TIGR04211198 TIGR04211, SH3_and_anchor, SH3 domain protein 0.001
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.002
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.002
pfam121281198 pfam12128, DUF3584, Protein of unknown function (D 0.002
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.003
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.003
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.004
PRK12704520 PRK12704, PRK12704, phosphodiesterase; Provisional 0.004
>gnl|CDD|218806 pfam05911, DUF869, Plant protein of unknown function (DUF869) Back     alignment and domain information 
 Score =  684 bits (1766), Expect = 0.0
 Identities = 408/889 (45%), Positives = 543/889 (61%), Gaps = 127/889 (14%)

Query: 98  KEDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQ 157
           KE LVKQH KVAEEAVSGWEKAEAEA ALK  LE VTL KL AEDRA+HLDGALKECMRQ
Sbjct: 1   KEALVKQHAKVAEEAVSGWEKAEAEAAALKQQLEDVTLKKLAAEDRASHLDGALKECMRQ 60

Query: 158 IRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSN 217
           +R ++EE EQK+QD    KTK+W+K++ E E K+   ++EL R+AAEN  LSRSLQE+S 
Sbjct: 61  LRQVREEQEQKIQDAATEKTKEWEKVKAELEKKLLELQKELARAAAENDALSRSLQEKSK 120

Query: 218 MLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIVSKELEIRNEEKNMSMRSAEA 277
           M++++SEEKS+AE+EIE LK  +E  E+E +S KYE+H++SKELEIRNEE+NMS++SA+A
Sbjct: 121 MIMELSEEKSRAESEIEDLKARLESAEKENSSLKYEVHVLSKELEIRNEERNMSLQSADA 180

Query: 278 ANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKMEVESLGRDYGDSRLKRSPV 337
           A+KQH+EGVKKIAKLEAECQRLRGLVRK+LPGPAALA+MK+EVESLG ++ D+R +RSP 
Sbjct: 181 ASKQHLEGVKKIAKLEAECQRLRGLVRKRLPGPAALAKMKLEVESLGSNFVDNRSRRSPS 240

Query: 338 KPTSPHLSPVSEFSLDNVQKFQKENEFLTERLLAMEEETKMLKEALAKRNSELQASRNLC 397
             +S         S  N+QK QKENEFLT RLLAME+E K LKEAL+KRNSELQ SRN+ 
Sbjct: 241 PASSAF-----HSSPQNLQKAQKENEFLTARLLAMEDENKTLKEALSKRNSELQFSRNMY 295

Query: 398 AKTASKLQSLEAQMQTSTQQKSPTKSVVQIAAEGYTSQNASNPPSLTSMSEDDNDDKVSC 457
           AKTASKL  LEAQ++++            ++ E  +S N SNPPSLTS+SED NDD+ SC
Sbjct: 296 AKTASKLSVLEAQLESNR----------DVSTELSSSSNTSNPPSLTSVSEDGNDDEGSC 345

Query: 458 ADSWATALISELSQIKKEKNVEKSNKAE-TPKHLELMDDFLEMEKLACLSNDTNSNGTIT 516
           ++SWA+ALISEL Q KKEK + KS+K   +   +ELMDDFLEMEKLA L  +++++G   
Sbjct: 346 SESWASALISELEQFKKEKGMGKSSKGTASSSEMELMDDFLEMEKLAMLPPESSADG--- 402

Query: 517 ASNGPNNKTSDIVNHDASGAVTSGEDLLSEQQRDMNPSVDKLSSNTQSSTVNPEADAGQP 576
                                                 V     +  S  +    +    
Sbjct: 403 ------------------------------------SKVSSPKCSDSSVALTGPVEHEDN 426

Query: 577 QLMKLRSRISMLLETISKDADMGKIVEDIKRVVEDEHVTLHQ--HSANCISDEVKCSDVS 634
              KL  R+  +L+++ K      I+ +I  ++ED    L     S+N   +  + + V 
Sbjct: 427 LESKLSDRLPEVLQSVLKLVMEKHIISEISEILEDIEAELDSLERSSNGDDENEEVAMV- 485

Query: 635 CSAEAYPGDASLNTERKIDLTVQVISQELVAAITQIHDFVLFLGKEARAVHDTTNENG-F 693
                     SL  E      V   SQEL  A+++I +F   L  E     D  +     
Sbjct: 486 ---------GSLVEESSA---VIERSQELEGAVSRISEFTSVLEHEVTVCQDLLDGKADL 533

Query: 694 SQKIEEFYVSFNKVIDSNTYLVDFVFALSNVLAKASELRINVMGYKDTEIEPNSPDCIDK 753
            + I+EF ++   V++    L D       V  +ASE++ N +G K +E E NSPD    
Sbjct: 534 EKFIQEFSLTLEWVVNQEKSLQD-------VSVEASEIKKNFLGLKSSEKEINSPD---- 582

Query: 754 VALPENKVIKKDTSGERYPNGCAHISNPTSDPEVPDDGSIVAAYESETTACKFSLEEFEE 813
                                                       E +   C  +LEE E 
Sbjct: 583 --------------------------------------------EVKGAVCISTLEELET 598

Query: 814 LKLEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAES 873
           LK EK+NL  +L++C ++LE +K++L ETE+ L E+K++L ++Q+SNSLAETQLKCM ES
Sbjct: 599 LKSEKENLDGELSKCKDDLEESKNKLQETEKKLEELKSELDASQESNSLAETQLKCMVES 658

Query: 874 YRSLETHAQELEAEVNLLRAKIESLENELQDEKMSHHNAMAKCKELEEQLQRNENCAVCS 933
           Y SLE  A++LEAE   L+ KI SLE+EL+ E+ +H   +AKC+ELEE+++R E      
Sbjct: 659 YESLELRAKDLEAEHKSLQEKISSLEDELEKERQNHQELIAKCRELEEKIERAEQEENMQ 718

Query: 934 SEADEN-KIKQDRDLAAAAERLAECQETILLLGKQLKSLRPQSEVIGSP 981
              +E  KIKQ++++AAAAE+LAECQETIL LGKQL+SL P  E +   
Sbjct: 719 KLDEEEQKIKQEKEIAAAAEKLAECQETILSLGKQLQSLAPPEEFLLDS 767

This family consists of a number of sequences found in Arabidopsis thaliana, Oryza sativa and Lycopersicon esculentum (Tomato). The function of this family is unknown. Length = 767
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional Back     alignment and domain information
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1091
PF05911769 DUF869: Plant protein of unknown function (DUF869) 100.0
PF05911769 DUF869: Plant protein of unknown function (DUF869) 99.51
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 99.48
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 99.34
KOG0996 1293 consensus Structural maintenance of chromosome pro 99.27
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 99.2
KOG01611930 consensus Myosin class II heavy chain [Cytoskeleto 99.13
COG11961163 Smc Chromosome segregation ATPases [Cell division 99.06
KOG01611930 consensus Myosin class II heavy chain [Cytoskeleto 98.97
TIGR006061311 rad50 rad50. This family is based on the phylogeno 98.95
COG11961163 Smc Chromosome segregation ATPases [Cell division 98.93
PRK02224880 chromosome segregation protein; Provisional 98.77
PRK02224880 chromosome segregation protein; Provisional 98.74
KOG09641200 consensus Structural maintenance of chromosome pro 98.61
TIGR006061311 rad50 rad50. This family is based on the phylogeno 98.6
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 98.55
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 98.37
PRK03918880 chromosome segregation protein; Provisional 98.35
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 98.11
PRK04863 1486 mukB cell division protein MukB; Provisional 97.98
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 97.82
KOG09961293 consensus Structural maintenance of chromosome pro 97.8
PF00038312 Filament: Intermediate filament protein; InterPro: 97.8
PRK04778569 septation ring formation regulator EzrA; Provision 97.79
KOG09331174 consensus Structural maintenance of chromosome pro 97.77
KOG06121317 consensus Rho-associated, coiled-coil containing p 97.69
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 97.65
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 97.64
PF121281201 DUF3584: Protein of unknown function (DUF3584); In 97.62
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 97.57
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 97.56
KOG0977546 consensus Nuclear envelope protein lamin, intermed 97.55
KOG10291118 consensus Endocytic adaptor protein intersectin [S 97.49
PF10174775 Cast: RIM-binding protein of the cytomatrix active 97.36
KOG09331174 consensus Structural maintenance of chromosome pro 97.32
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 97.32
PHA02562562 46 endonuclease subunit; Provisional 97.31
PRK03918880 chromosome segregation protein; Provisional 97.31
PF10174775 Cast: RIM-binding protein of the cytomatrix active 97.3
KOG0977546 consensus Nuclear envelope protein lamin, intermed 97.29
PRK11637428 AmiB activator; Provisional 97.25
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 97.22
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 97.22
PRK11637428 AmiB activator; Provisional 97.16
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 97.11
PRK09039343 hypothetical protein; Validated 97.07
KOG10291118 consensus Endocytic adaptor protein intersectin [S 96.96
KOG1003205 consensus Actin filament-coating protein tropomyos 96.92
PF14662193 CCDC155: Coiled-coil region of CCDC155 96.92
KOG06121317 consensus Rho-associated, coiled-coil containing p 96.88
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 96.87
PF05701522 WEMBL: Weak chloroplast movement under blue light; 96.84
PHA02562562 46 endonuclease subunit; Provisional 96.83
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 96.78
PRK04863 1486 mukB cell division protein MukB; Provisional 96.76
PF00038312 Filament: Intermediate filament protein; InterPro: 96.71
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 96.7
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 96.67
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 96.66
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 96.66
PF15070617 GOLGA2L5: Putative golgin subfamily A member 2-lik 96.65
KOG0963629 consensus Transcription factor/CCAAT displacement 96.64
PF10481307 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 96.58
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 96.57
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 96.56
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 96.56
PRK09039343 hypothetical protein; Validated 96.55
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 96.54
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 96.52
PRK04778569 septation ring formation regulator EzrA; Provision 96.49
PF05701522 WEMBL: Weak chloroplast movement under blue light; 96.49
KOG0980980 consensus Actin-binding protein SLA2/Huntingtin-in 96.48
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 96.47
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 96.42
PF15070617 GOLGA2L5: Putative golgin subfamily A member 2-lik 96.4
KOG1003205 consensus Actin filament-coating protein tropomyos 96.39
PF09730717 BicD: Microtubule-associated protein Bicaudal-D; I 96.37
KOG0963629 consensus Transcription factor/CCAAT displacement 96.17
COG4942420 Membrane-bound metallopeptidase [Cell division and 96.17
COG4372499 Uncharacterized protein conserved in bacteria with 96.15
KOG09641200 consensus Structural maintenance of chromosome pro 96.12
KOG09711243 consensus Microtubule-associated protein dynactin 96.08
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 96.08
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 96.05
KOG4673961 consensus Transcription factor TMF, TATA element m 96.03
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 95.85
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 95.84
PF14915305 CCDC144C: CCDC144C protein coiled-coil region 95.81
TIGR026801353 conserved hypothetical protein TIGR02680. Members 95.8
PRK112811113 hypothetical protein; Provisional 95.73
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 95.58
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 95.57
PF01576859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 95.55
PF05010207 TACC: Transforming acidic coiled-coil-containing p 95.47
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 95.44
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 95.4
PF09789319 DUF2353: Uncharacterized coiled-coil protein (DUF2 95.38
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 95.36
PF13851201 GAS: Growth-arrest specific micro-tubule binding 95.36
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 95.3
COG3883265 Uncharacterized protein conserved in bacteria [Fun 95.22
PRK10869553 recombination and repair protein; Provisional 95.18
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 95.15
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 94.89
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 94.88
KOG46431195 consensus Uncharacterized coiled-coil protein [Fun 94.71
TIGR00634563 recN DNA repair protein RecN. All proteins in this 94.69
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 94.69
PF06818202 Fez1: Fez1; InterPro: IPR009638 This family repres 94.65
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 94.61
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 94.55
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 94.54
PF10481307 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 94.54
KOG0982502 consensus Centrosomal protein Nuf [Cell cycle cont 94.54
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 94.53
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 94.5
KOG1899 861 consensus LAR transmembrane tyrosine phosphatase-i 94.47
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 94.34
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 94.31
PRK01156895 chromosome segregation protein; Provisional 94.31
KOG2991330 consensus Splicing regulator [RNA processing and m 94.26
COG4477570 EzrA Negative regulator of septation ring formatio 94.14
PF12795240 MscS_porin: Mechanosensitive ion channel porin dom 94.1
KOG1899 861 consensus LAR transmembrane tyrosine phosphatase-i 94.03
PF03148384 Tektin: Tektin family; InterPro: IPR000435 Tektin 93.9
COG3883265 Uncharacterized protein conserved in bacteria [Fun 93.85
PF10186302 Atg14: UV radiation resistance protein and autopha 93.8
PF15066527 CAGE1: Cancer-associated gene protein 1 family 93.77
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 93.74
TIGR01000457 bacteriocin_acc bacteriocin secretion accessory pr 93.73
PRK112811113 hypothetical protein; Provisional 93.72
PF14073178 Cep57_CLD: Centrosome localisation domain of Cep57 93.6
PF13851201 GAS: Growth-arrest specific micro-tubule binding 93.55
PF09728309 Taxilin: Myosin-like coiled-coil protein; InterPro 93.38
PF09787511 Golgin_A5: Golgin subfamily A member 5; InterPro: 93.25
KOG09791072 consensus Structural maintenance of chromosome pro 93.22
PF05557722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 93.22
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 93.09
PF00769246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 93.07
PRK01156895 chromosome segregation protein; Provisional 93.05
KOG0980980 consensus Actin-binding protein SLA2/Huntingtin-in 93.02
TIGR03007498 pepcterm_ChnLen polysaccharide chain length determ 92.94
PF04111314 APG6: Autophagy protein Apg6; InterPro: IPR007243 92.92
KOG1937521 consensus Uncharacterized conserved protein [Funct 92.9
COG0497557 RecN ATPase involved in DNA repair [DNA replicatio 92.83
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 92.8
PF00769246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 92.51
PF135141111 AAA_27: AAA domain 92.49
KOG09711243 consensus Microtubule-associated protein dynactin 92.45
KOG09791072 consensus Structural maintenance of chromosome pro 92.4
PF15450531 DUF4631: Domain of unknown function (DUF4631) 92.4
KOG4360 596 consensus Uncharacterized coiled coil protein [Fun 92.37
PF06818202 Fez1: Fez1; InterPro: IPR009638 This family repres 92.37
TIGR01005754 eps_transp_fam exopolysaccharide transport protein 92.33
PF15254861 CCDC14: Coiled-coil domain-containing protein 14 92.31
PRK12704520 phosphodiesterase; Provisional 92.25
PF10146230 zf-C4H2: Zinc finger-containing protein ; InterPro 92.14
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 92.04
PF10186302 Atg14: UV radiation resistance protein and autopha 91.96
PF13870177 DUF4201: Domain of unknown function (DUF4201) 91.86
TIGR03319514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 91.84
PF10498359 IFT57: Intra-flagellar transport protein 57 ; Inte 91.84
PF13870177 DUF4201: Domain of unknown function (DUF4201) 91.81
TIGR00634563 recN DNA repair protein RecN. All proteins in this 91.72
PF10212518 TTKRSYEDQ: Predicted coiled-coil domain-containing 91.7
TIGR03007498 pepcterm_ChnLen polysaccharide chain length determ 91.6
PF10498359 IFT57: Intra-flagellar transport protein 57 ; Inte 91.53
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 91.44
COG4942420 Membrane-bound metallopeptidase [Cell division and 91.43
PF14662193 CCDC155: Coiled-coil region of CCDC155 91.31
PF04111314 APG6: Autophagy protein Apg6; InterPro: IPR007243 91.29
PF13166712 AAA_13: AAA domain 91.22
PF14915305 CCDC144C: CCDC144C protein coiled-coil region 91.17
PF05384159 DegS: Sensor protein DegS; InterPro: IPR008595 Thi 90.84
PF01576859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 90.78
PF09304107 Cortex-I_coil: Cortexillin I, coiled coil; InterPr 90.76
COG5185622 HEC1 Protein involved in chromosome segregation, i 90.58
PF11559151 ADIP: Afadin- and alpha -actinin-Binding; InterPro 90.26
PF12072201 DUF3552: Domain of unknown function (DUF3552); Int 90.19
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 90.08
KOG4593716 consensus Mitotic checkpoint protein MAD1 [Cell cy 90.07
COG2433652 Uncharacterized conserved protein [Function unknow 89.96
PF15254861 CCDC14: Coiled-coil domain-containing protein 14 89.86
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 89.83
KOG0288459 consensus WD40 repeat protein TipD [General functi 89.64
PRK102461047 exonuclease subunit SbcC; Provisional 89.56
PRK10884206 SH3 domain-containing protein; Provisional 89.5
KOG0243 1041 consensus Kinesin-like protein [Cytoskeleton] 89.44
PF15233134 SYCE1: Synaptonemal complex central element protei 89.41
PF05010207 TACC: Transforming acidic coiled-coil-containing p 89.41
PF05557722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 89.22
PRK00106535 hypothetical protein; Provisional 89.14
KOG2129 552 consensus Uncharacterized conserved protein H4 [Fu 89.13
PF05483786 SCP-1: Synaptonemal complex protein 1 (SCP-1); Int 88.86
PF05622713 HOOK: HOOK protein; InterPro: IPR008636 This famil 88.73
COG5185622 HEC1 Protein involved in chromosome segregation, i 88.41
PF07889126 DUF1664: Protein of unknown function (DUF1664); In 88.24
PF12795240 MscS_porin: Mechanosensitive ion channel porin dom 88.14
KOG4360596 consensus Uncharacterized coiled coil protein [Fun 88.04
PF15450531 DUF4631: Domain of unknown function (DUF4631) 88.03
TIGR03017444 EpsF chain length determinant protein EpsF. Sequen 88.0
TIGR03017444 EpsF chain length determinant protein EpsF. Sequen 87.88
COG4026290 Uncharacterized protein containing TOPRIM domain, 87.84
PF05335188 DUF745: Protein of unknown function (DUF745); Inte 87.73
PF11559151 ADIP: Afadin- and alpha -actinin-Binding; InterPro 87.71
TIGR01005754 eps_transp_fam exopolysaccharide transport protein 87.61
KOG0982502 consensus Centrosomal protein Nuf [Cell cycle cont 87.46
COG4026290 Uncharacterized protein containing TOPRIM domain, 87.45
KOG4787852 consensus Uncharacterized conserved protein [Funct 87.32
PF08702146 Fib_alpha: Fibrinogen alpha/beta chain family; Int 87.27
KOG2685421 consensus Cystoskeletal protein Tektin [Cytoskelet 87.27
PRK109291109 putative mechanosensitive channel protein; Provisi 87.07
KOG0243 1041 consensus Kinesin-like protein [Cytoskeleton] 86.99
PF10146230 zf-C4H2: Zinc finger-containing protein ; InterPro 86.95
KOG4403575 consensus Cell surface glycoprotein STIM, contains 86.85
KOG1937521 consensus Uncharacterized conserved protein [Funct 86.79
PF06785401 UPF0242: Uncharacterised protein family (UPF0242); 86.77
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 86.26
PF15290305 Syntaphilin: Golgi-localised syntaxin-1-binding cl 86.13
PF05335188 DUF745: Protein of unknown function (DUF745); Inte 86.06
KOG2991330 consensus Splicing regulator [RNA processing and m 86.03
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 85.98
PF09787511 Golgin_A5: Golgin subfamily A member 5; InterPro: 85.81
COG1382119 GimC Prefoldin, chaperonin cofactor [Posttranslati 85.64
PRK03947140 prefoldin subunit alpha; Reviewed 85.59
KOG0999772 consensus Microtubule-associated protein Bicaudal- 85.53
KOG4809654 consensus Rab6 GTPase-interacting protein involved 85.52
KOG0239670 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] 85.4
cd00632105 Prefoldin_beta Prefoldin beta; Prefoldin is a hexa 85.16
COG2433652 Uncharacterized conserved protein [Function unknow 85.02
PF11932251 DUF3450: Protein of unknown function (DUF3450); In 84.72
KOG0972384 consensus Huntingtin interacting protein 1 (Hip1) 84.72
PF07106169 TBPIP: Tat binding protein 1(TBP-1)-interacting pr 84.58
COG3096 1480 MukB Uncharacterized protein involved in chromosom 84.43
KOG4438446 consensus Centromere-associated protein NUF2 [Cell 84.4
PF06008264 Laminin_I: Laminin Domain I; InterPro: IPR009254 L 84.34
TIGR01000457 bacteriocin_acc bacteriocin secretion accessory pr 84.31
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 84.15
PF10234267 Cluap1: Clusterin-associated protein-1; InterPro: 84.04
COG1382119 GimC Prefoldin, chaperonin cofactor [Posttranslati 84.01
COG307479 Uncharacterized protein conserved in bacteria [Fun 83.92
PF02994370 Transposase_22: L1 transposable element; InterPro: 83.55
PF13166712 AAA_13: AAA domain 83.53
PF03962188 Mnd1: Mnd1 family; InterPro: IPR005647 This family 83.52
PF09789319 DUF2353: Uncharacterized coiled-coil protein (DUF2 83.23
PF06785401 UPF0242: Uncharacterised protein family (UPF0242); 83.13
KOG0249916 consensus LAR-interacting protein and related prot 83.02
KOG3647338 consensus Predicted coiled-coil protein [General f 82.99
PF1419769 Cep57_CLD_2: Centrosome localisation domain of PPC 82.73
KOG0999772 consensus Microtubule-associated protein Bicaudal- 82.54
COG4372499 Uncharacterized protein conserved in bacteria with 82.35
PRK03947140 prefoldin subunit alpha; Reviewed 82.26
COG1842225 PspA Phage shock protein A (IM30), suppresses sigm 82.18
PRK109291109 putative mechanosensitive channel protein; Provisi 81.98
PF1232974 TMF_DNA_bd: TATA element modulatory factor 1 DNA b 81.74
PF11932251 DUF3450: Protein of unknown function (DUF3450); In 81.67
PF04871136 Uso1_p115_C: Uso1 / p115 like vesicle tethering pr 81.62
PF09728309 Taxilin: Myosin-like coiled-coil protein; InterPro 81.5
PF0882661 DMPK_coil: DMPK coiled coil domain like; InterPro: 81.47
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 81.35
PF05384159 DegS: Sensor protein DegS; InterPro: IPR008595 Thi 81.12
KOG2129552 consensus Uncharacterized conserved protein H4 [Fu 81.01
TIGR02338110 gimC_beta prefoldin, beta subunit, archaeal. Chape 80.82
TIGR02338110 gimC_beta prefoldin, beta subunit, archaeal. Chape 80.35
PLN02939977 transferase, transferring glycosyl groups 80.3
PF07445173 priB_priC: Primosomal replication protein priB and 80.27
KOG1853333 consensus LIS1-interacting protein NUDE [Cytoskele 80.18
PF15397258 DUF4618: Domain of unknown function (DUF4618) 80.16
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 80.04
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants Back     alignment and domain information 
Probab=100.00  E-value=1.2e-149  Score=1341.74  Aligned_cols=766  Identities=51%  Similarity=0.679  Sum_probs=658.3

Q ss_pred             hhHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 001374           98 KEDLVKQHTKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQKLQDFVLTKT  177 (1091)
Q Consensus        98 kd~lvkqh~kvaeeav~gwekae~e~~~lK~~Le~~~~q~~~le~rv~hLd~aLKec~~qLr~~reeqeqki~~~~~~~~  177 (1091)
                      ||+|||||+|||||||+||||||+||++||+|||+++++++++||||+|||||||+||||||++|||||||||++|++++
T Consensus         1 k~~lvkqh~kvaeeav~gwekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s   80 (769)
T PF05911_consen    1 KDDLVKQHAKVAEEAVSGWEKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKS   80 (769)
T ss_pred             CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 001374          178 KQWDKIRLEFEAKIANFEQELLRSAAENATLSRSLQERSNMLIKISEEKSQAEAEIELLKGNIEQCEREINSAKYELHIV  257 (1091)
Q Consensus       178 ~e~e~~~~ELEaKLaElEkeLeelkaEl~aLeeqLEelqeeI~EL~eeiErlEgEi~LLkERIenlEKEne~LK~EL~~L  257 (1091)
                      +||++++.+|+.+|.++.++|.++.+++..+...|+.+.+.|.+|.+.+.++++++..++.|++++++++..|+|+++++
T Consensus        81 ~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~  160 (769)
T PF05911_consen   81 KEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVL  160 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCChHHHHHHHHHHhhhcCCcCCccccCCCC
Q 001374          258 SKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKMEVESLGRDYGDSRLKRSPV  337 (1091)
Q Consensus       258 qeELEiL~EElE~s~qsaeal~KQ~lEl~KKLaKLEaEcqrLr~l~rk~lpgpaa~a~mk~ev~~l~~~~~~~r~rr~~~  337 (1091)
                      +++|++|++|+++..++++++++||++.++||++||+||+|||+||||||||||||||||+|||+|||+++++||||+|+
T Consensus       161 ~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~~~~~~~~r~r~~~~  240 (769)
T PF05911_consen  161 SKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALVRKKLPGPAALAQMKNEVESLGRDSGENRRRRSPS  240 (769)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHhccccccccCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcccchhhhHhhhhhhHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHhhhccc
Q 001374          338 KPTSPHLSPVSEFSLDNVQKFQKENEFLTERLLAMEEETKMLKEALAKRNSELQASRNLCAKTASKLQSLEAQMQTSTQQ  417 (1091)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~eee~k~lke~l~~k~~elq~sr~~~a~t~~kl~~~e~q~~~~~~~  417 (1091)
                      ++++++.     ++.++.+.++++++|||+||++||||||||||+|++||+||||||+|||+|||||++||+||.     
T Consensus       241 ~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql~-----  310 (769)
T PF05911_consen  241 RPSSPHD-----FSPQNPQKRSKESEFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQLK-----  310 (769)
T ss_pred             ccccccc-----ccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            8877653     566788899999999999999999999999999999999999999999999999999999993     


Q ss_pred             CCCCchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCcCcchhhHhhhhhhhhhhhhccccccC-CCCCCccccccchH
Q 001374          418 KSPTKSVVQIAAEGYTSQNASNPPSLTSMSEDDNDDKVSCADSWATALISELSQIKKEKNVEKSN-KAETPKHLELMDDF  496 (1091)
Q Consensus       418 ~~~~~~~~~~~~~~~~s~~~s~~~s~~s~s~~~~dd~~s~s~swasalisel~~fk~~k~~~~~~-~~~~~~~~~lMDDF  496 (1091)
                           ++.++++++++++|++||||++|||++|+||++||+|||||||||||||||++|.+++++ .++.++||+|||||
T Consensus       311 -----~~~~~~~e~~~s~~~~~~~s~~s~se~~~dd~~s~s~SWAsaLiseldqfk~~k~~~~~~~~~~~~~~i~LMDDF  385 (769)
T PF05911_consen  311 -----SSGQVSMELSSSQNTSNPPSLTSMSEDGNDDEGSCSDSWASALISELDQFKNEKVISRSSSKTISSSDIDLMDDF  385 (769)
T ss_pred             -----HhhccccccccccCCCCCCchhcccccCCCCCCcccchhHHHHhchHHHhccccccccccccCCccccHHHHHHH
Confidence                 336788999999999999999999999999999999999999999999999999855555 44567799999999


Q ss_pred             HHhHhhhccccCCCCCCccccCCCCCCCCCcccccCCCcccccccchhhhhhccCCCcccccccccCCCCCCCCcccCch
Q 001374          497 LEMEKLACLSNDTNSNGTITASNGPNNKTSDIVNHDASGAVTSGEDLLSEQQRDMNPSVDKLSSNTQSSTVNPEADAGQP  576 (1091)
Q Consensus       497 lEmEkLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  576 (1091)
                      ||||||||+|.++++.++++.+.....      ....+.. +.+.+...                     ..  ..-.+.
T Consensus       386 lEmEkLA~~s~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~---------------------~~--~~~~~~  435 (769)
T PF05911_consen  386 LEMEKLAALSRDSSSPSSCSSSEVDSD------SSVTLES-SSKRESVL---------------------ES--DKLSDR  435 (769)
T ss_pred             HHHHHHHhcCCCCCCCCCCCCcccccc------ccccccc-cccccccc---------------------cc--hhhccc
Confidence            999999999998887777642111110      1111111 01111111                     00  001255


Q ss_pred             hhhHHHHHHHHHHHhh-ccccchhHHHHHHHHHHhhhhhhhhccccccccccccCCcccccccCCCCCCCccchhhhhhh
Q 001374          577 QLMKLRSRISMLLETI-SKDADMGKIVEDIKRVVEDEHVTLHQHSANCISDEVKCSDVSCSAEAYPGDASLNTERKIDLT  655 (1091)
Q Consensus       577 ~~~~l~~~~~~~~e~~-~~~~~~~~il~~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  655 (1091)
                      .|+|||++++.|+++. +++++  .||+||+++|.++++..       ...     +.     .+..+.....+..-..+
T Consensus       436 ~~~wLqsv~k~v~~q~~~s~i~--~ILedI~~al~~~~~~~-------~~~-----~~-----~~~~~~~~~sL~e~~~s  496 (769)
T PF05911_consen  436 IPEWLQSVLKLVLEQKEVSKIS--EILEDIEIALDSINNSS-------NCD-----DD-----SEEYESMEASLVEESKS  496 (769)
T ss_pred             ccHHHHHHHHHHHHHHHhhhHH--HHHHHHHHHHHhhcccc-------ccc-----cc-----cchhhhhhhhHHHHHHH
Confidence            7999999999999998 88877  99999999999997611       110     00     00001111111112344


Q ss_pred             HHHHhHHHHHHHHHHHHHHHhhhhhhhhhcCCCCchhhHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHhhhhhhh
Q 001374          656 VQVISQELVAAITQIHDFVLFLGKEARAVHDTTNENGFSQKIEEFYVSFNKVIDSNTYLVDFVFALSNVLAKASELRINV  735 (1091)
Q Consensus       656 ~~~~~~~l~~~~~~i~~~v~~~~~e~~~~~~~~~~~~l~~~l~~f~~~~~~~l~~~~~~~~f~~~l~~~l~~~~~~~~~~  735 (1091)
                      ...++.+|..++.+|+||+..+                    ++|.|+|+++|+|+++|.+|+.+++.+|+|+.++||++
T Consensus       497 ~~~~s~eL~~avskIsEfv~~L--------------------ekeVh~C~DLLsgkadLE~fieE~s~tLdwIls~~~SL  556 (769)
T PF05911_consen  497 MIEISQELNVAVSKISEFVLVL--------------------EKEVHVCQDLLSGKADLERFIEEFSLTLDWILSNCFSL  556 (769)
T ss_pred             HHhhcccHHHHHHhHHHHHHHH--------------------HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHccchH
Confidence            5568899999999998876655                    67888899999999999999999999999999999988


Q ss_pred             cCCCCCccCCCCccccccccccchhhcccCCCCCCCCCCccCCCCCCCCCCCCCCccccccccchhhhhccCHHHHHHHH
Q 001374          736 MGYKDTEIEPNSPDCIDKVALPENKVIKKDTSGERYPNGCAHISNPTSDPEVPDDGSIVAAYESETTACKFSLEEFEELK  815 (1091)
Q Consensus       736 ~~~~~~e~e~~~~~~~dk~~~~e~k~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~EelEqLE  815 (1091)
                      .+..         +..|.   +...+           .+|.     +..-++...      -......+..+.++++.++
T Consensus       557 qDv~---------s~~sE---IK~~f-----------~~~s-----s~e~E~~~~------dea~~~~~~el~eelE~le  602 (769)
T PF05911_consen  557 QDVS---------SMRSE---IKKNF-----------DGDS-----SSEAEINSE------DEADTSEKKELEEELEKLE  602 (769)
T ss_pred             HHHH---------HHHHH---HHHhh-----------hhcc-----cccccccch------HHHHHHHHHHHHHHHHHHH
Confidence            8711         11111   11111           0010     001110000      0233445567889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001374          816 LEKDNLATDLARCTENLEMTKSQLYETEQLLAEVKAQLASAQKSNSLAETQLKCMAESYRSLETHAQELEAEVNLLRAKI  895 (1091)
Q Consensus       816 sEkeelE~eLee~~eklEel~~qLqelE~~LeELesQLesLqeS~selEeqLk~~~e~ledLesrL~eLeaElkeLqeKV  895 (1091)
                      .++.++++.|..|+++++.++.+|+++++.|.+|+.+|..++++++.++++++++.+.|+.+++++..+++++++++.||
T Consensus       603 ~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki  682 (769)
T PF05911_consen  603 SEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKI  682 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhh-hcccchhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 001374          896 ESLENELQDEKMSHHNAMAKCKELEEQLQRNENC-AVCSSEADENKIKQDRDLAAAAERLAECQETILLLGKQLKSLRPQ  974 (1091)
Q Consensus       896 esLE~ELe~ek~~~eEleaK~~eLEeQLe~~~~~-~lk~q~dkdLKikqEkEIaaAeeKLAEcQeTI~sLEKQLKsLa~q  974 (1091)
                      ..|+.||++++..+.++.++|.+|+++|+++... ......+.+++++++|+|++|++||||||+||.+||+|||+|+++
T Consensus       683 ~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLAECQeTI~sLGkQLksLa~~  762 (769)
T PF05911_consen  683 SSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAAAAEKLAECQETIASLGKQLKSLATP  762 (769)
T ss_pred             HHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence            9999999999999999999999999999999872 222333778899999999999999999999999999999999999


Q ss_pred             CcccCCC
Q 001374          975 SEVIGSP  981 (1091)
Q Consensus       975 ~e~~~~~  981 (1091)
                      +||++++
T Consensus       763 ~d~~~ds  769 (769)
T PF05911_consen  763 EDFLLDS  769 (769)
T ss_pred             hhhhccC
Confidence            9999874

The function of this family is unknown.
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton] Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton] Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>PF14915 CCDC144C: CCDC144C protein coiled-coil region Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK10869 recombination and repair protein; Provisional Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>TIGR00634 recN DNA repair protein RecN Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] Back     alignment and domain information
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only] Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG2991 consensus Splicing regulator [RNA processing and modification] Back     alignment and domain information
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning] Back     alignment and domain information
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain Back     alignment and domain information
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only] Back     alignment and domain information
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules [] Back     alignment and domain information
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>PF15066 CAGE1: Cancer-associated gene protein 1 family Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57 Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed Back     alignment and domain information
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure Back     alignment and domain information
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>KOG1937 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>PF13514 AAA_27: AAA domain Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF15450 DUF4631: Domain of unknown function (DUF4631) Back     alignment and domain information
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown] Back     alignment and domain information
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein Back     alignment and domain information
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family Back     alignment and domain information
>PF15254 CCDC14: Coiled-coil domain-containing protein 14 Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>PF13870 DUF4201: Domain of unknown function (DUF4201) Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms Back     alignment and domain information
>PF13870 DUF4201: Domain of unknown function (DUF4201) Back     alignment and domain information
>TIGR00634 recN DNA repair protein RecN Back     alignment and domain information
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF13166 AAA_13: AAA domain Back     alignment and domain information
>PF14915 CCDC144C: CCDC144C protein coiled-coil region Back     alignment and domain information
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold) Back     alignment and domain information
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch Back     alignment and domain information
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF15254 CCDC14: Coiled-coil domain-containing protein 14 Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only] Back     alignment and domain information
>PRK10246 exonuclease subunit SbcC; Provisional Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>KOG0243 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>PF15233 SYCE1: Synaptonemal complex central element protein 1 Back     alignment and domain information
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown] Back     alignment and domain information
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function Back     alignment and domain information
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain Back     alignment and domain information
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown] Back     alignment and domain information
>PF15450 DUF4631: Domain of unknown function (DUF4631) Back     alignment and domain information
>TIGR03017 EpsF chain length determinant protein EpsF Back     alignment and domain information
>TIGR03017 EpsF chain length determinant protein EpsF Back     alignment and domain information
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only] Back     alignment and domain information
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function Back     alignment and domain information
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch Back     alignment and domain information
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family Back     alignment and domain information
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only] Back     alignment and domain information
>KOG4787 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation Back     alignment and domain information
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton] Back     alignment and domain information
>PRK10929 putative mechanosensitive channel protein; Provisional Back     alignment and domain information
>KOG0243 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only] Back     alignment and domain information
>KOG1937 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp Back     alignment and domain information
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function Back     alignment and domain information
>KOG2991 consensus Splicing regulator [RNA processing and modification] Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure Back     alignment and domain information
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK03947 prefoldin subunit alpha; Reviewed Back     alignment and domain information
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] Back     alignment and domain information
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms] Back     alignment and domain information
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences Back     alignment and domain information
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells Back     alignment and domain information
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin Back     alignment and domain information
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition Back     alignment and domain information
>PF13166 AAA_13: AAA domain Back     alignment and domain information
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast) Back     alignment and domain information
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function Back     alignment and domain information
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function Back     alignment and domain information
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only] Back     alignment and domain information
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only] Back     alignment and domain information
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89 Back     alignment and domain information
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>PRK03947 prefoldin subunit alpha; Reviewed Back     alignment and domain information
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PRK10929 putative mechanosensitive channel protein; Provisional Back     alignment and domain information
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures Back     alignment and domain information
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein Back     alignment and domain information
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed Back     alignment and domain information
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure Back     alignment and domain information
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins Back     alignment and domain information
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown] Back     alignment and domain information
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal Back     alignment and domain information
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal Back     alignment and domain information
>PLN02939 transferase, transferring glycosyl groups Back     alignment and domain information
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long) Back     alignment and domain information
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] Back     alignment and domain information
>PF15397 DUF4618: Domain of unknown function (DUF4618) Back     alignment and domain information
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1091
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-14
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 7e-13
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-12
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-12
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-08
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 5e-08
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-07
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-05
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 5e-04
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-08
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 6e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 8e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-04
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 7e-04
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 9e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 75.3 bits (184), Expect = 8e-14
 Identities = 100/701 (14%), Positives = 202/701 (28%), Gaps = 203/701 (28%)

Query: 146 HLD---GALKECMRQIRNLKEEHEQKLQDFVLTKTKQWDKIRLEFEAK-IANFEQELLRS 201
           H+D   G  +   + I          L  F        D     F+ K + +  + +L  
Sbjct: 6   HMDFETGEHQYQYKDI----------LSVFE-------DAFVDNFDCKDVQDMPKSILSK 48

Query: 202 A-AENATLSRSLQERSNMLIKISEEKSQAEAEI---ELLKGNIEQCEREINSAKYELHIV 257
              ++  +S+     +  L      K +   +    E+L+ N +     I   K E    
Sbjct: 49  EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI---KTEQRQP 105

Query: 258 SKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLR---GLVRKKLPGPAALA 314
           S    +  E+++      +   K ++  ++   KL      LR    ++   + G     
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL---IDG----- 157

Query: 315 QMKMEVESLGRDYGDSRLKRSPVKPTSPHLSPVSEFSLDNVQKFQKENEF----LTERLL 370
            +       G   G + +                +  L    K Q + +F    L     
Sbjct: 158 -VL------G--SGKTWV--------------ALDVCLS--YKVQCKMDFKIFWLN---- 188

Query: 371 AMEEETKMLKEALAKRNSE---LQASRNLCAKTASKLQSLEAQMQTSTQQKSPTKSVVQ- 426
                       L   NS    L+  + L  +      S          +    ++ ++ 
Sbjct: 189 ------------LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 427 -IAAEGYTSQNASNPPSLTSMSEDD-NDDKV------SC------ADSWATALISELSQI 472
            + ++ Y          L  +   +  + K       SC           T  +S  +  
Sbjct: 237 LLKSKPY-------ENCLLVL--LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS--AAT 285

Query: 473 KKEKNVEKSNKAETP-KHLELMDDFLEMEKLACLSNDTNSN-----GTITAS--NGPN-N 523
               +++  +   TP +   L+  +L+  +   L  +  +        I  S  +G    
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDC-RPQDLPREVLTTNPRRLSIIAESIRDGLATW 344

Query: 524 KTSDIVNHDASGAV--TSGEDLLSEQQRDM-------NPSVDKLSSNT------QSSTVN 568
                VN D    +  +S   L   + R M        PS   + +             +
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA-HIPTILLSLIWFDVIKSD 403

Query: 569 PEADAGQPQLMKLRSRISMLLETISKDADMGKI-VEDI---KRVVEDEHVTLHQHSANCI 624
                    ++    + S++     K      I +  I    +V  +    LH+     I
Sbjct: 404 VM------VVVNKLHKYSLVE----KQPKESTISIPSIYLELKVKLENEYALHRS----I 449

Query: 625 SDEVKCSDVSCSAEAYPGDASLNTE------------RKIDLTVQVISQELVAAITQIH- 671
            D                D                  + I+        E +     +  
Sbjct: 450 VDHYNIPKTFD-----SDDLIPPYLDQYFYSHIGHHLKNIEHP------ERMTLFRMVFL 498

Query: 672 DFVLFLGKEARAVHDTTNENGFSQKIE-----EFYVSFNKVIDSNTYLVDFVFALSNVLA 726
           DF  FL  E +  HD+T  N     +      +FY  +  + D++      V A+ + L 
Sbjct: 499 DFR-FL--EQKIRHDSTAWNASGSILNTLQQLKFYKPY--ICDNDPKYERLVNAILDFLP 553

Query: 727 KASELRINVMGYKDTEIEPNSPDCIDKVAL-PENKVIKKDT 766
           K  E   N++  K T         + ++AL  E++ I ++ 
Sbjct: 554 KIEE---NLICSKYT--------DLLRIALMAEDEAIFEEA 583
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1091
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 98.62
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 97.97
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 97.82
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 97.28
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 96.97
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 96.89
2efr_A155 General control protein GCN4 and tropomyosin 1 Al; 96.68
2efr_A155 General control protein GCN4 and tropomyosin 1 Al; 96.66
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 96.63
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 96.57
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 96.56
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 96.55
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 96.36
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 96.28
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 96.12
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 95.75
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 95.71
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 95.25
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 95.12
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 95.04
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 95.02
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 94.58
2b9c_A147 Striated-muscle alpha tropomyosin; alpha-helix, co 94.48
2ocy_A154 RAB guanine nucleotide exchange factor SEC2; RAB, 93.51
2ocy_A154 RAB guanine nucleotide exchange factor SEC2; RAB, 92.44
3tnu_B129 Keratin, type II cytoskeletal 5; coiled-coil, stru 92.2
3ol1_A119 Vimentin; structural genomics, PSI-2, protein stru 91.75
3tnu_A131 Keratin, type I cytoskeletal 14; coiled-coil, stru 91.71
3ghg_A562 Fibrinogen alpha chain; triple-stranded coiled coi 91.65
1ic2_A81 Tropomyosin alpha chain, skeletal muscle; alpha-he 90.6
4gkw_A167 Spindle assembly abnormal protein 6; double helix, 90.27
3oja_A487 Leucine-rich immune molecule 1; coiled-coil, helix 90.11
1ic2_A81 Tropomyosin alpha chain, skeletal muscle; alpha-he 90.05
3ol1_A119 Vimentin; structural genomics, PSI-2, protein stru 89.81
3mq9_A471 Bone marrow stromal antigen 2 fused to maltose-BI 89.65
1deq_A390 Fibrinogen (alpha chain); coiled-coil, blood clott 89.1
3swk_A86 Vimentin; cytoskeleton, intermediate filament, alp 87.87
2eqb_B97 RAB guanine nucleotide exchange factor SEC2; coile 87.65
2b9c_A147 Striated-muscle alpha tropomyosin; alpha-helix, co 87.36
1deq_A390 Fibrinogen (alpha chain); coiled-coil, blood clott 87.3
3q8t_A96 Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90 87.19
3hnw_A138 Uncharacterized protein; coiled-coil, structural g 86.9
3q8t_A96 Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90 86.8
1l8d_A112 DNA double-strand break repair RAD50 ATPase; zinc 86.61
3ghg_A562 Fibrinogen alpha chain; triple-stranded coiled coi 86.35
2i1j_A575 Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, 86.18
3mq7_A121 Bone marrow stromal antigen 2; HIV, antiviral prot 85.78
2v4h_A110 NF-kappa-B essential modulator; transcription, met 85.62
3swk_A86 Vimentin; cytoskeleton, intermediate filament, alp 85.38
3iv1_A78 Tumor susceptibility gene 101 protein; coiled_COIL 85.37
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 85.29
1x79_B112 RAB GTPase binding effector protein 1; rabaptin5, 85.19
3tnu_B129 Keratin, type II cytoskeletal 5; coiled-coil, stru 84.4
3tnu_A131 Keratin, type I cytoskeletal 14; coiled-coil, stru 84.34
3bas_A89 Myosin heavy chain, striated muscle/general contro 84.19
2v4h_A110 NF-kappa-B essential modulator; transcription, met 83.22
3bas_A89 Myosin heavy chain, striated muscle/general contro 82.85
1m1j_B464 Fibrinogen beta chain; coiled coils, disulfide rin 82.82
2zqm_A117 Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9 81.87
3mq7_A121 Bone marrow stromal antigen 2; HIV, antiviral prot 81.79
1l8d_A112 DNA double-strand break repair RAD50 ATPase; zinc 81.5
2eqb_B97 RAB guanine nucleotide exchange factor SEC2; coile 81.13
2xzr_A114 Immunoglobulin-binding protein EIBD; cell adhesion 80.79
3mq9_A471 Bone marrow stromal antigen 2 fused to maltose-BI 80.48
1fxk_A107 Prefoldin; archaeal protein, chaperone; 2.30A {Met 80.03
3a7p_A152 Autophagy protein 16; coiled-coil, coiled coil, cy 80.02
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
Probab=98.62  E-value=0.00014  Score=75.02  Aligned_cols=12  Identities=17%  Similarity=0.221  Sum_probs=4.6

Q ss_pred             HHHHHHHHHHHH
Q 001374           77 MEEQIKELNEKL   88 (1091)
Q Consensus        77 ~~~~~k~l~ekl   88 (1091)
                      +...+..+..++
T Consensus        25 l~~~l~~l~~~~   36 (284)
T 1c1g_A           25 AEADKKAAEDRS   36 (284)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Back     alignment and structure
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1 Back     alignment and structure
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1 Back     alignment and structure
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans} Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1 Back     alignment and structure
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli} Back     alignment and structure
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens} Back     alignment and structure
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1 Back     alignment and structure
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus} Back     alignment and structure
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} Back     alignment and structure
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus} Back     alignment and structure
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1 Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Back     alignment and structure
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A Back     alignment and structure
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus} Back     alignment and structure
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens} Back     alignment and structure
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens} Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2 Back     alignment and structure
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A Back     alignment and structure
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus} Back     alignment and structure
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A Back     alignment and structure
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B* Back     alignment and structure
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A Back     alignment and structure
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A Back     alignment and structure
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1 Back     alignment and structure
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd} Back     alignment and structure
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli} Back     alignment and structure
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B Back     alignment and structure
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1091
d1fxka_107 Prefoldin beta subunit {Archaeon Methanobacterium 81.73
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=81.73  E-value=10  Score=33.20  Aligned_cols=31  Identities=23%  Similarity=0.330  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001374          894 KIESLENELQDEKMSHHNAMAKCKELEEQLQ  924 (1091)
Q Consensus       894 KVesLE~ELe~ek~~~eEleaK~~eLEeQLe  924 (1091)
                      +++.|+.++..+..+...+..++.+++.+|.
T Consensus        73 ~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l~  103 (107)
T d1fxka_          73 KLETLQLREKTIERQEERVMKKLQEMQVNIQ  103 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444444443