Citrus Sinensis ID: 001380
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1089 | 2.2.26 [Sep-21-2011] | |||||||
| A4IF69 | 726 | NHL repeat-containing pro | yes | no | 0.584 | 0.876 | 0.398 | 1e-124 | |
| Q5ZI67 | 727 | NHL repeat-containing pro | yes | no | 0.578 | 0.866 | 0.395 | 1e-124 | |
| Q8NBF2 | 726 | NHL repeat-containing pro | yes | no | 0.583 | 0.874 | 0.383 | 1e-123 | |
| Q8BZW8 | 725 | NHL repeat-containing pro | yes | no | 0.588 | 0.884 | 0.386 | 1e-123 | |
| O33513 | 227 | Protein CbbY OS=Rhodobact | no | no | 0.169 | 0.814 | 0.321 | 9e-17 | |
| P54607 | 220 | Uncharacterized protein Y | yes | no | 0.163 | 0.809 | 0.307 | 2e-15 | |
| P59960 | 695 | Protein DipZ OS=Mycobacte | yes | no | 0.156 | 0.244 | 0.281 | 1e-14 | |
| Q10801 | 695 | Protein DipZ OS=Mycobacte | yes | no | 0.156 | 0.244 | 0.281 | 1e-14 | |
| P95649 | 230 | Protein CbbY OS=Rhodobact | yes | no | 0.165 | 0.782 | 0.326 | 2e-14 | |
| Q7ADF8 | 222 | 2-deoxyglucose-6-phosphat | N/A | no | 0.168 | 0.824 | 0.314 | 2e-13 |
| >sp|A4IF69|NHLC2_BOVIN NHL repeat-containing protein 2 OS=Bos taurus GN=NHLRC2 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 447 bits (1149), Expect = e-124, Method: Compositional matrix adjust.
Identities = 277/695 (39%), Positives = 390/695 (56%), Gaps = 59/695 (8%)
Query: 406 SQSERIQQFVNYISDVENRKTTPIVPEFPAKLDWLNTA-PLQFRRDLKGKVVVLDFWTYC 464
+Q E+ Y+ V+ + +VPEFP L+WLNT P+ +DL GKVV+LDF+TYC
Sbjct: 30 TQEEKDGLVYQYLQKVDGWEQDLLVPEFPEGLEWLNTEEPISVYKDLCGKVVILDFFTYC 89
Query: 465 CINCMHVLPDLEFLEKKYKDMP-FTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDG 523
CINC+H+LPDL LE Y D +VGVHSAKF NEK L+ IR+AVLRY I+HPVVND
Sbjct: 90 CINCIHLLPDLHALEHTYSDKDGLLIVGVHSAKFPNEKVLDNIRSAVLRYNITHPVVNDA 149
Query: 524 DMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFYGKKKLLDNTPL 583
D +LW+EL V+ WPT ++GP G +L L GEGH++ L AL +Y + + +
Sbjct: 150 DASLWQELEVSCWPTLIILGPRGNMLFSLIGEGHKEKLFLYTSIALKYYKDRGQIRANKI 209
Query: 584 PLSLEKDNDPRLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGE 643
+ L KD+ P SPL FPGK+ +D ++NRL I+D+ H+RI+V +G IG
Sbjct: 210 GIKLYKDSLP---PSPLLFPGKITVDHVSNRLVIADTGHHRILVVWKNGQIQYSIGGP-N 265
Query: 644 EGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSD 703
G +DG F +++FN PQG+A N++YVADTENH +R+ID + V T+AG G +G+D
Sbjct: 266 PGRKDGIFSESSFNSPQGVAI--MNNIIYVADTENHLIRKIDLEAEMVSTVAGIGIQGTD 323
Query: 704 YQGGEKGTSQLLNSPWDVCYKPINEKV------YIAMAGQHQIW-----------EHSTV 746
+GG KG Q ++SPWDV + +V +IAMAG HQIW ++
Sbjct: 324 KEGGAKGDEQPISSPWDVVFGRSGPEVQRDNILWIAMAGTHQIWALLLDCGRLPKKNELK 383
Query: 747 DGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPD--FMEIYVADSESSSIRALNLKT 804
G F+G G E N N + FAQPSG+SL+ + + ++VADSESS++R ++LK
Sbjct: 384 KGTCLRFAGSGNEENRNNAYPHKAGFAQPSGLSLASEGPWSCLFVADSESSTVRTVSLKD 443
Query: 805 GGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGV-YCAKNGQIYVADSYNHKIKKL 863
G + L GG+ P NLF FGD DG+G LQHPLGV + K +YVADSYNHKIK +
Sbjct: 444 GAVKHLVGGERD-PMNLFAFGDVDGVGINARLQHPLGVTWDQKRNLLYVADSYNHKIKVV 502
Query: 864 DPASNRVSTLAGIGKAGFKDGAALA-AQLSEPAGIIEAQNGN-LFIADTNNNIIRYLDLN 921
DP + +TLAG G A G++ + +EP G+ +NG L++ADTNN+ I+ LDL
Sbjct: 503 DPKTKNCTTLAGTGNASNMIGSSFTDSTFNEPGGLCIGENGQLLYVADTNNHQIKVLDLE 562
Query: 922 KEE----PELQTLELKGVQPPTPKSRSPKRLRR--RSSPDAQTIVVDGGLSNEGNIYLKI 975
+ P ++ E V P + PK L + +S+P + V L++
Sbjct: 563 TKTVSVFPVFRS-ENAVVDGPCLAGK-PKTLPKLPKSAPGIRLAPVAASPGQTLQFKLRL 620
Query: 976 SLPEEYHFSKEARSKFSVDVEPENAVIIDPLDGNLSPEGSAVLHFRRMSPSVSTG----- 1030
LP ++ A S + + E + L G + P G + P++S
Sbjct: 621 DLPSGTKLTEGASSCWFLSAEGNEWL----LQGQI-PSGE--IESISNQPTISLQIPGDC 673
Query: 1031 -------RISCKVYYCKED-EVCLYKPLLFEVPFQ 1057
IS +YYC D C+ K +LF P Q
Sbjct: 674 LSLEAILSISVFLYYCSSDSSACMMKGILFSQPLQ 708
|
Bos taurus (taxid: 9913) |
| >sp|Q5ZI67|NHLC2_CHICK NHL repeat-containing protein 2 OS=Gallus gallus GN=NHLRC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 446 bits (1148), Expect = e-124, Method: Compositional matrix adjust.
Identities = 276/698 (39%), Positives = 388/698 (55%), Gaps = 68/698 (9%)
Query: 409 ERIQQFVNYISDVENRKTTPIVPEFPAKLDWLNT-APLQFRRDLKGKVVVLDFWTYCCIN 467
E+ Y+ +++R+ VPE L WLNT P+ +DL GKVVVLDF+TYCCIN
Sbjct: 28 EKENLVYQYLKKMDSRERDLTVPELSRDLQWLNTEGPISLHKDLCGKVVVLDFFTYCCIN 87
Query: 468 CMHVLPDLEFLEKKYKDMP-FTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMN 526
C+H+LPDL LE +Y D ++GVHSAKF NEK L++I++AVLRY I HPVVND D
Sbjct: 88 CLHLLPDLHELEHQYSDKDGLVIIGVHSAKFPNEKVLDSIKSAVLRYNIVHPVVNDADAT 147
Query: 527 LWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFYGKKKLLDNTPLPLS 586
LW EL V+ WPT ++GP G +L L GEGH++ L L FY ++ + + + +
Sbjct: 148 LWHELEVSCWPTLVILGPRGNMLFSLVGEGHKEKLFLFTSITLKFYKERGQIKDNSIGIK 207
Query: 587 LEKDNDPRLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGL 646
L KD+ P SPL FPGK+ +D RL I+D+ H+RI+VT +G + IG G
Sbjct: 208 LYKDSLP---PSPLLFPGKVTVDKSGERLVIADTGHHRILVTLKNGQILHTIGGP-NSGR 263
Query: 647 RDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQG 706
+DG F +A FN PQG+A K N++YVADTENH +R+ID + V T+AG G +G D +G
Sbjct: 264 KDGRFSEAAFNSPQGVAI--KNNVIYVADTENHLIRKIDLELEIVTTVAGIGIQGVDKEG 321
Query: 707 GEKGTSQLLNSPWDVCY------KPINEKVYIAMAGQHQIWE-----------HSTVDGV 749
G KG Q ++SPWDV + ++ ++IAMAG HQ+W GV
Sbjct: 322 GAKGEEQPISSPWDVVFGNSVSGTQEDDVLWIAMAGIHQVWALMLEGGKLPKGSDLKKGV 381
Query: 750 TRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPD--FMEIYVADSESSSIRALNLKTGGS 807
F+G G E N N + FAQPSG+SL+ + + ++VADSESS++R ++LK G
Sbjct: 382 CLRFAGSGNEENRNNAYPHKAGFAQPSGLSLASEEPWNCLFVADSESSTVRMISLKDGAV 441
Query: 808 RLLAGG--DPIFPDNLFKFGDRDGMGSEVLLQHPLGV-YCAKNGQIYVADSYNHKIKKLD 864
+ L GG DP+ NLF FGD DG G LQHPLG+ + K +YVADSYNHKIK +D
Sbjct: 442 KHLVGGERDPL---NLFAFGDVDGAGINAKLQHPLGITWDKKRKLLYVADSYNHKIKVVD 498
Query: 865 PASNRVSTLAGIGKAGFKDGAALA-AQLSEPAGIIEAQNGNL-FIADTNNNIIRYLDLNK 922
P +TLAG G+A G++ + +EP G+ +NG L ++ADTNN+ I+ LDL
Sbjct: 499 PKMKNCATLAGTGEASNVVGSSFTQSTFNEPGGLCIEENGRLVYVADTNNHQIKVLDLET 558
Query: 923 E--------EPE----LQTLELKGVQ----PPTPKSRSPKRLRRRSSPDAQTIVVDGGLS 966
+ PE L ++ Q P PKS +L S+ QTI
Sbjct: 559 KILSMLPILNPETCDVTDNLSVQKDQIANLPKLPKSAPNIQLPSLSAAPGQTI------- 611
Query: 967 NEGNIYLKISLPEEYHFSKEARSKFSVDVEPENAVII--DPLDG---NLSPEGSAVLHFR 1021
LK++LP + ++EA + + + E N ++ L G ++S +
Sbjct: 612 ---QFLLKLTLPPDSKLNEEAPNAWFITAEDNNTWLLQGQCLSGEIKDVSCQTVIPFQLP 668
Query: 1022 RMSPSV-STGRISCKVYYCKED-EVCLYKPLLFEVPFQ 1057
R+ S + I +YYC +D C+ K + F P Q
Sbjct: 669 RVCLSAEAVLAIKACLYYCSKDSSACMMKGISFNQPLQ 706
|
Gallus gallus (taxid: 9031) |
| >sp|Q8NBF2|NHLC2_HUMAN NHL repeat-containing protein 2 OS=Homo sapiens GN=NHLRC2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 443 bits (1139), Expect = e-123, Method: Compositional matrix adjust.
Identities = 267/696 (38%), Positives = 386/696 (55%), Gaps = 61/696 (8%)
Query: 406 SQSERIQQFVNYISDVENRKTTPIVPEFPAKLDWLNTA-PLQFRRDLKGKVVVLDFWTYC 464
+Q E+ Y+ V+ + VPEFP L+WLNT P+ +DL GK+VVLDF+TYC
Sbjct: 30 TQQEKDSLVYQYLQKVDGWEQDLSVPEFPEGLEWLNTEEPISVYKDLCGKIVVLDFFTYC 89
Query: 465 CINCMHVLPDLEFLEKKYKDMP-FTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDG 523
CINC+H+LPDL LE Y D ++GVHSAKF NEK L+ I++AVLRY I+HP+VND
Sbjct: 90 CINCIHLLPDLHALEHTYSDKDGLLIIGVHSAKFPNEKVLDNIKSAVLRYNITHPMVNDA 149
Query: 524 DMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFYGKKKLLDNTPL 583
D +LW+EL V+ WPT ++GP G +L L GEGH+ L AL +Y + + + +
Sbjct: 150 DASLWQELEVSCWPTLVILGPRGNMLFSLIGEGHKDKLFLYTSIALKYYKDRGQIRDNKI 209
Query: 584 PLSLEKDNDPRLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGE 643
+ L KD+ P SPL FPGK+ +D + +RL I+D+ H+RI+V +G IG
Sbjct: 210 GIKLYKDSLP---PSPLLFPGKVTVDQVTDRLVIADTGHHRILVVWKNGQIQYSIGGP-N 265
Query: 644 EGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSD 703
G +DG F ++TFN PQG+A N++YVADTENH +R+ID + V T+AG G +G+D
Sbjct: 266 PGRKDGIFSESTFNSPQGVAI--MNNIIYVADTENHLIRKIDLEAEKVSTVAGIGIQGTD 323
Query: 704 YQGGEKGTSQLLNSPWDVCYKPINEKV------YIAMAGQHQIW-----------EHSTV 746
+GG KG Q ++SPWDV + +V +IAMAG HQIW ++
Sbjct: 324 KEGGAKGEQQPISSPWDVVFGTSGSEVQRGDILWIAMAGTHQIWALLLDSGKLPKKNELT 383
Query: 747 DGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPD--FMEIYVADSESSSIRALNLKT 804
G F+G G E N N + FAQPSG+SL+ + + ++VADSESS++R ++LK
Sbjct: 384 KGTCLRFAGSGNEENRNNAYPHKAGFAQPSGLSLASEDPWSCLFVADSESSTVRTVSLKD 443
Query: 805 GGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGV-YCAKNGQIYVADSYNHKIKKL 863
G + L GG+ P NLF FGD DG+G LQHPLGV + K +YVADSYNHKIK +
Sbjct: 444 GAVKHLVGGERD-PMNLFAFGDVDGVGINAKLQHPLGVTWDKKRNLLYVADSYNHKIKVV 502
Query: 864 DPASNRVSTLAGIGKAGFKDGAALA-AQLSEPAGIIEAQNGN-LFIADTNNNIIRYLDLN 921
DP + +TLAG G ++ + +EP G+ +NG L++ADTNN+ I+ +DL
Sbjct: 503 DPKTKNCTTLAGTGDTNNVTSSSFTESTFNEPGGLCIGENGELLYVADTNNHQIKVMDLE 562
Query: 922 KEE----PELQT----------LELKGVQPPTPKSRSPKRLRRRSSPDAQTIVVDGGLSN 967
+ P ++ +E + P PKS RL ++ QT+
Sbjct: 563 TKMVSVLPIFRSENAVVDGPFLVEKQKTLPKLPKSAPSIRLSPVTACAGQTL-------- 614
Query: 968 EGNIYLKISLPEEYHFSKEARSKFSVDVEPENAVIIDPLDG----NLSPEGSAVLHFRRM 1023
L++ LP ++ S + + E ++ + N+S + + L
Sbjct: 615 --QFKLRLDLPSGSKLTEGVSSCWFLTAEGNEWLLQGQIAAGDIENISSQPTISLQIPDD 672
Query: 1024 SPSV-STGRISCKVYYCKED-EVCLYKPLLFEVPFQ 1057
S+ + +S +YYC D C+ K +LF P Q
Sbjct: 673 CLSLEAIVSVSVFLYYCSADSSACMMKAILFSQPLQ 708
|
Homo sapiens (taxid: 9606) |
| >sp|Q8BZW8|NHLC2_MOUSE NHL repeat-containing protein 2 OS=Mus musculus GN=Nhlrc2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 442 bits (1138), Expect = e-123, Method: Compositional matrix adjust.
Identities = 266/689 (38%), Positives = 387/689 (56%), Gaps = 48/689 (6%)
Query: 406 SQSERIQQFVNYISDVENRKTTPIVPEFPAKLDWLNTA-PLQFRRDLKGKVVVLDFWTYC 464
+Q E+ + Y+ V+ + VPEFP L+WLNT PL +DL GKVVVLDF+TYC
Sbjct: 30 TQQEKDELVYQYLQKVDGWEQDLAVPEFPEGLEWLNTEEPLSIYKDLCGKVVVLDFFTYC 89
Query: 465 CINCMHVLPDLEFLEKKYKDMP-FTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDG 523
CINC+HVLPDL LE+++ D +VGVHSAKF NEK L+ I++AVLRY I+HPVVND
Sbjct: 90 CINCIHVLPDLHALERRFSDKDGLLIVGVHSAKFPNEKVLDNIKSAVLRYNITHPVVNDA 149
Query: 524 DMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFYGKKKLLDNTPL 583
D +LW+EL V+ WPT ++GP G LL L GEGHR L AL +Y + + + +
Sbjct: 150 DASLWQELEVSCWPTLVILGPRGNLLFSLIGEGHRDKLFSYTSIALKYYKDRGQIRDGKI 209
Query: 584 PLSLEKDNDPRLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGE 643
+ L K++ P SPL FPGK+A+D RL ++D+ H+RI+V +G IG
Sbjct: 210 GIKLFKESLP---PSPLLFPGKVAVDHATGRLVVADTGHHRILVIQKNGRIQSSIGGP-N 265
Query: 644 EGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSD 703
G +DG F +++FN PQG+A N++YVADTENH +R+ID + V T+AG G +G+D
Sbjct: 266 PGRKDGMFSESSFNSPQGVAI--ADNVIYVADTENHLIRKIDLEAEKVTTVAGVGIQGTD 323
Query: 704 YQGGEKGTSQLLNSPWDVCYKPI------NEKVYIAMAGQHQIW-----------EHSTV 746
+GGE+G Q ++SPWDV N+ ++IAMAG HQIW +
Sbjct: 324 TEGGEEGDKQPISSPWDVALGTSGSEVQRNDILWIAMAGTHQIWALLLDSGTLPKKSDLK 383
Query: 747 DGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPD--FMEIYVADSESSSIRALNLKT 804
G F+G G E N N + FAQPSG++L+ + + ++VADSESS++R ++L+
Sbjct: 384 KGTCIRFAGSGNEENRNNAYPHKAGFAQPSGLALASEEPWSCLFVADSESSTVRTVSLRD 443
Query: 805 GGSRLLAGG--DPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQI-YVADSYNHKIK 861
G + L GG DP+ NLF FGD DG G LQHPLGV + Q+ YVADSYNHKIK
Sbjct: 444 GAVKHLVGGERDPM---NLFAFGDVDGAGINAKLQHPLGVAWDEERQVLYVADSYNHKIK 500
Query: 862 KLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADTNNNIIRYLDL 920
+DP + +TLAG G A + + +EP G+ ++G L++ADTNN+ I+ +DL
Sbjct: 501 VVDPKTKGCTTLAGTGDASDASSSFAESAFNEPGGLCIGESGRLLYVADTNNHQIKVMDL 560
Query: 921 NKEEPEL------QTLELKGVQPPTPKSRSPKRLRRRSSPDAQTIVVDGGLSNEGNIYLK 974
+ + + G P + PK + + + V G + + + LK
Sbjct: 561 EARTVSVLPVCKSDSAVVDGSFPREKQKTVPKVPKSAAHIGLPPVTVHPGQALQ--LRLK 618
Query: 975 ISLPEEYHFSKEARSKFSVDVEPENAVIIDPLDG----NLSPEGSAVLHFRRMSPSV-ST 1029
+ LP ++ A S + ++ E ++ + N+S + + L S+ +
Sbjct: 619 LQLPPGAKLTEGAPSCWFLEAEGNEWLLQEQTPSGDIENISNQPAISLQIPTHCLSLEAV 678
Query: 1030 GRISCKVYYCKED-EVCLYKPLLFEVPFQ 1057
+ +YYC D C+ K ++F P Q
Sbjct: 679 VSVVVFLYYCSADSSACMMKGVVFRQPLQ 707
|
Mus musculus (taxid: 10090) |
| >sp|O33513|CBBY_RHOCA Protein CbbY OS=Rhodobacter capsulatus GN=cbbY PE=3 SV=1 | Back alignment and function description |
|---|
Score = 90.1 bits (222), Expect = 9e-17, Method: Composition-based stats.
Identities = 62/193 (32%), Positives = 106/193 (54%), Gaps = 8/193 (4%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEV--TVEDFLPFM-GTGEANFLGGVAS 134
++ A++FD+DG L +EE R+A + FA G++ + ED+ + TG +
Sbjct: 2 ELKALIFDVDGTLAETEEVHRQAFNETFAAQGLDWYWSKEDYRTLLRTTGGKERMAKHRE 61
Query: 135 VKGVKGFDSEAAK--KRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADR 192
G D++ A K + Y++ A G+ PG ELI++ K+ GL++A+A++ R
Sbjct: 62 NLGSGPSDAKIADLHKAKTQRYVEIIASGQVGL-LPGVAELIDRAKASGLRLAIATTTTR 120
Query: 193 IKVDANLAAA-GLPV-SMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALA 250
VDA +AA P +F+ I + D KPAPD++L A + L +P + C+ ED+ A
Sbjct: 121 ANVDALIAATFSKPAGDIFEVIAAGDEVAQKKPAPDVYLRALQGLGLPPAACLAFEDSRA 180
Query: 251 GVQAAKAAQMRCI 263
G+ +A+AA +R +
Sbjct: 181 GLASARAAGLRVV 193
|
Rhodobacter capsulatus (taxid: 1061) |
| >sp|P54607|YHCW_BACSU Uncharacterized protein YhcW OS=Bacillus subtilis (strain 168) GN=yhcW PE=3 SV=1 | Back alignment and function description |
|---|
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 97/192 (50%), Gaps = 14/192 (7%)
Query: 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGV 138
+ A++FD DG++ ++E ++F E G LP G+ +G A +
Sbjct: 2 IKALIFDFDGLILDTETHEYEVLQEIFEEHG------SVLPLSVWGKV--IGTAAGFRPF 53
Query: 139 KGFDSEAAKK----RFFEIYLDKYAKP-NSGIGFPGALELINQCKSKGLKVAVASSADRI 193
+ + + KK ++ +++AK S PG +N K GLK+ +ASS+D
Sbjct: 54 EYLEEQIGKKLNHEELTQLRRERFAKRMESEKARPGVEAYLNAAKDLGLKIGLASSSDYK 113
Query: 194 KVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQ 253
V +L GL F+ I +AD E +KP P+++L A+K L V +EC+ ED++ G
Sbjct: 114 WVSGHLKQIGL-FDDFEVIQTADDVEEVKPNPELYLLAAKNLGVSPAECLAFEDSVNGSI 172
Query: 254 AAKAAQMRCIAV 265
AAK A M+C+ V
Sbjct: 173 AAKRAGMKCVIV 184
|
Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|P59960|DIPZ_MYCBO Protein DipZ OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=dipZ PE=4 SV=1 | Back alignment and function description |
|---|
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 74/174 (42%), Gaps = 4/174 (2%)
Query: 399 EQTEGGSSQSERIQQFVNYISDVENRKTTPIVPEFPAKLDWLNT---APLQFRRDLKGKV 455
EQ G + + Q N ++ P+ WLNT P+ + L+GKV
Sbjct: 369 EQLNLGGIVNAQNAQLSNCSDGAAQLESCGTAPDLKGITGWLNTPGNKPIDLK-SLRGKV 427
Query: 456 VVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGI 515
V++DFW Y CINC +P + + YKD V+GVH+ ++ EK + GI
Sbjct: 428 VLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGI 487
Query: 516 SHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569
S+P+ D + W WP ++ G + GEG + LV L
Sbjct: 488 SYPIALDNNYATWTNYRNRYWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQLL 541
|
Mycobacterium bovis (taxid: 1765) |
| >sp|Q10801|DIPZ_MYCTU Protein DipZ OS=Mycobacterium tuberculosis GN=dipZ PE=1 SV=1 | Back alignment and function description |
|---|
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 74/174 (42%), Gaps = 4/174 (2%)
Query: 399 EQTEGGSSQSERIQQFVNYISDVENRKTTPIVPEFPAKLDWLNT---APLQFRRDLKGKV 455
EQ G + + Q N ++ P+ WLNT P+ + L+GKV
Sbjct: 369 EQLNLGGIVNAQNAQLSNCSDGAAQLESCGTAPDLKGITGWLNTPGNKPIDLK-SLRGKV 427
Query: 456 VVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGI 515
V++DFW Y CINC +P + + YKD V+GVH+ ++ EK + GI
Sbjct: 428 VLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGI 487
Query: 516 SHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569
S+P+ D + W WP ++ G + GEG + LV L
Sbjct: 488 SYPIALDNNYATWTNYRNRYWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQLL 541
|
Mycobacterium tuberculosis (taxid: 1773) |
| >sp|P95649|CBBY_RHOSH Protein CbbY OS=Rhodobacter sphaeroides GN=cbbY PE=3 SV=1 | Back alignment and function description |
|---|
Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 64/196 (32%), Positives = 100/196 (51%), Gaps = 16/196 (8%)
Query: 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVE--VTVEDFLPFMGT--GEANFLGGVAS 134
+ A+LFD+DG L +EE RRA + FA +GV+ E++ + T G+ +
Sbjct: 2 IEAILFDVDGTLAETEELHRRAFNETFAALGVDWFWDREEYRELLTTTGGKERIARFLRH 61
Query: 135 VKG----VKGFDSEAAK-KRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASS 189
KG + D AK +RF + + PG +LI + K G+++AVA++
Sbjct: 62 QKGDPAPLPIADIHRAKTERFVALMAEGEIALR-----PGIADLIAEAKRAGIRLAVATT 116
Query: 190 ADRIKVDANLAAA-GLPV-SMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIED 247
V+A A G P +FD I + D KP+PDI+ A + L+VP + +ED
Sbjct: 117 TSLPNVEALCRACFGHPAREIFDVIAAGDMVAEKKPSPDIYRLALRELDVPPERAVALED 176
Query: 248 ALAGVQAAKAAQMRCI 263
+L G++AAK A +RCI
Sbjct: 177 SLNGLRAAKGAGLRCI 192
|
Rhodobacter sphaeroides (taxid: 1063) |
| >sp|Q7ADF8|YNIC_ECO57 2-deoxyglucose-6-phosphate phosphatase OS=Escherichia coli O157:H7 GN=yniC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 98/191 (51%), Gaps = 8/191 (4%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLP-FMGTGEANFLGGVASVK 136
++ A +FDMDG+L +SE RA +DV A +GV+++ + LP +G + + +
Sbjct: 6 QILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRRNELPDTLGLRIDMVVDLWYARQ 65
Query: 137 GVKGFDSEAAKKRFFE--IYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIK 194
G + +R I L + +P PG E + CK +GL V +AS++
Sbjct: 66 PWNGPSRQEVVERVIARAISLVEETRPL----LPGVREAVALCKEQGLLVGLASASPLHM 121
Query: 195 VDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQA 254
++ L L S FDA+ SA+ KP P ++L + L V C+ +ED++ G+ A
Sbjct: 122 LEKVLTMFDLRDS-FDALASAEKLPYSKPHPQVYLDCAAKLGVDPLTCVALEDSVNGMIA 180
Query: 255 AKAAQMRCIAV 265
+KAA+MR I V
Sbjct: 181 SKAARMRSIVV 191
|
Catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate (2dGlu6P). Escherichia coli O157:H7 (taxid: 83334) EC: 3 EC: . EC: 1 EC: . EC: 3 EC: . EC: 6 EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1089 | ||||||
| 225450563 | 1078 | PREDICTED: NHL repeat-containing protein | 0.978 | 0.988 | 0.777 | 0.0 | |
| 356571070 | 1098 | PREDICTED: NHL repeat-containing protein | 0.985 | 0.977 | 0.748 | 0.0 | |
| 255542920 | 1016 | 2-deoxyglucose-6-phosphate phosphatase, | 0.923 | 0.990 | 0.794 | 0.0 | |
| 449435944 | 1086 | PREDICTED: NHL repeat-containing protein | 0.986 | 0.988 | 0.739 | 0.0 | |
| 224125014 | 1065 | predicted protein [Populus trichocarpa] | 0.951 | 0.972 | 0.759 | 0.0 | |
| 296089788 | 1002 | unnamed protein product [Vitis vinifera] | 0.915 | 0.995 | 0.807 | 0.0 | |
| 30696124 | 1055 | haloacid dehalogenase-like hydrolase dom | 0.887 | 0.915 | 0.755 | 0.0 | |
| 297848174 | 1058 | hypothetical protein ARALYDRAFT_892829 [ | 0.900 | 0.927 | 0.735 | 0.0 | |
| 12323029 | 1041 | hypothetical protein [Arabidopsis thalia | 0.902 | 0.944 | 0.715 | 0.0 | |
| 383100947 | 1028 | haloacid dehalogenase-like hydrolase dom | 0.873 | 0.925 | 0.714 | 0.0 |
| >gi|225450563|ref|XP_002277564.1| PREDICTED: NHL repeat-containing protein 2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1689 bits (4373), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 835/1074 (77%), Positives = 934/1074 (86%), Gaps = 8/1074 (0%)
Query: 12 ASSLSLQTKLFFFSPNTKQLRPSSVSSALFQCGAKRTVLGRRMVV--KACVTKVEETDVN 69
+SS T F F P + S+ S + + ++ L R KACV K+EE +V
Sbjct: 6 SSSQRHHTTPFIFPPPSI----STPLSLIRRLSSRHVSLRHRRTAAPKACV-KLEEKNVP 60
Query: 70 VSSESKWGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFL 129
+ +S+WGKVSAVLFDMDGVLCNSEEPSRRA VDVF EMGV+VT EDF+PFMGTGEANFL
Sbjct: 61 ETGKSQWGKVSAVLFDMDGVLCNSEEPSRRAGVDVFHEMGVQVTTEDFVPFMGTGEANFL 120
Query: 130 GGVASVKGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASS 189
GGVASVKGVKGFD EAAKKRFFEIYL+KYAKPNSGIGFPGALELINQCKS GLKVAVASS
Sbjct: 121 GGVASVKGVKGFDPEAAKKRFFEIYLEKYAKPNSGIGFPGALELINQCKSNGLKVAVASS 180
Query: 190 ADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDAL 249
ADRIKVDANLAAAGLP+SMFDAIVSADAFENLKPAPDIFL+ASKIL+VP ECIVIEDAL
Sbjct: 181 ADRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAASKILDVPPGECIVIEDAL 240
Query: 250 AGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTGGGGSYNEKIQEH 309
AGVQAAKAAQMRCIAVTTTL EE LK A PSLIRKEIG+VS++DILTGG NEKIQ
Sbjct: 241 AGVQAAKAAQMRCIAVTTTLPEETLKAAGPSLIRKEIGNVSVHDILTGGSDCPNEKIQGS 300
Query: 310 ELLHAASQNSTALLKEKTDNWSILDTGAADEKGSSTSGLQGSRREILRYGSLGVAFSCLF 369
+ +++ Q S +LKE ++ SI +T + S +GLQGSRR+++RYGSLG+A SCL
Sbjct: 301 QYINSFEQTSPEVLKEGAESVSIQETNSDGGGVLSIAGLQGSRRDMVRYGSLGIALSCLA 360
Query: 370 FAVSNWKAMQYASPKAIWNVLFGVNRPSFEQTEGGSSQSERIQQFVNYISDVENRKTTPI 429
FAVSNWKAMQYASPKAIWN+LFGVNRP+F + E G SQ+ RIQQFVNYISD+E+R
Sbjct: 361 FAVSNWKAMQYASPKAIWNLLFGVNRPTFGKNE-GESQTGRIQQFVNYISDLESRGNATT 419
Query: 430 VPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTV 489
VPEFP++LDWLN+APLQ RRDLKGKVVVLDFWTYCCINCMHVLPDLEFLE KYKD PFTV
Sbjct: 420 VPEFPSQLDWLNSAPLQLRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLETKYKDKPFTV 479
Query: 490 VGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLL 549
VGVHSAKFDNEKDLEAIRNAVLRYGI+HPVVNDGDM LWRELGVNSWPTFAVVGPNGKLL
Sbjct: 480 VGVHSAKFDNEKDLEAIRNAVLRYGINHPVVNDGDMYLWRELGVNSWPTFAVVGPNGKLL 539
Query: 550 AQLAGEGHRKDLDDLVEAALLFYGKKKLLDNTPLPLSLEKDNDPRLFTSPLKFPGKLAID 609
AQL+GEG RKDLDD+V AAL+FYG+KK+LDN+PLPLSLEK+NDPRL TSPLKFPGKLAID
Sbjct: 540 AQLSGEGRRKDLDDIVAAALIFYGEKKMLDNSPLPLSLEKENDPRLLTSPLKFPGKLAID 599
Query: 610 ILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKN 669
++NNRLFISDSNHNRIVVTDL+GN+I+QIGS+GEEGLRDGSFDDATFNRPQGLAYNAKKN
Sbjct: 600 VINNRLFISDSNHNRIVVTDLNGNYILQIGSTGEEGLRDGSFDDATFNRPQGLAYNAKKN 659
Query: 670 LLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEK 729
LLYVADTENHALREIDFVN+TV+TLAGNGTKGSDYQGG KG +QLLNSPWDVC++PINE
Sbjct: 660 LLYVADTENHALREIDFVNETVQTLAGNGTKGSDYQGGGKGATQLLNSPWDVCFEPINEI 719
Query: 730 VYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYV 789
VYIAMAGQHQIWEH+T+DGVTRAFSGDGYERNLNG SS +TSFAQPSGISLSPD E+Y+
Sbjct: 720 VYIAMAGQHQIWEHNTLDGVTRAFSGDGYERNLNGYSSTSTSFAQPSGISLSPDLKEVYI 779
Query: 790 ADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ 849
ADSESSSIRAL+LKTGGSRLLAGGD +F DNLF+FGD DG+GSEVLLQHPLGV C K+GQ
Sbjct: 780 ADSESSSIRALDLKTGGSRLLAGGDTVFSDNLFRFGDHDGVGSEVLLQHPLGVSCGKDGQ 839
Query: 850 IYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIAD 909
IYVADSYNHKIKKLDPA+ RVSTLAG GKAGFKDG ALAAQLSEP+GI+E +NG LFIAD
Sbjct: 840 IYVADSYNHKIKKLDPATGRVSTLAGTGKAGFKDGRALAAQLSEPSGIVEVENGVLFIAD 899
Query: 910 TNNNIIRYLDLNKEEPELQTLELKGVQPPTPKSRSPKRLRRRSSPDAQTIVVDGGLSNEG 969
TNN++IRYLDL K+E +L TLELKGVQPP PKSRS KRLRRRSS D QTI DG SNEG
Sbjct: 900 TNNSVIRYLDLKKKEADLVTLELKGVQPPIPKSRSLKRLRRRSSADTQTITADGTSSNEG 959
Query: 970 NIYLKISLPEEYHFSKEARSKFSVDVEPENAVIIDPLDGNLSPEGSAVLHFRRMSPSVST 1029
N+Y++IS+PE YHFSKEA+SKFS++ EPE ++I PLDG LSP G A LHFRR SPS
Sbjct: 960 NLYIRISVPEGYHFSKEAQSKFSIETEPETTMVIAPLDGILSPGGFATLHFRRSSPSAFM 1019
Query: 1030 GRISCKVYYCKEDEVCLYKPLLFEVPFQEEVPNSPPAEITLPYDLKPKILTNSL 1083
R++CKVYYCKEDEVCLY+ + FEVPF++ +P S PAEI+L Y +KPK TNSL
Sbjct: 1020 ARVNCKVYYCKEDEVCLYQSVAFEVPFRDAIPGSSPAEISLDYAVKPKTPTNSL 1073
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356571070|ref|XP_003553704.1| PREDICTED: NHL repeat-containing protein 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1683 bits (4359), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 823/1099 (74%), Positives = 925/1099 (84%), Gaps = 26/1099 (2%)
Query: 6 LLSSPPASSLSLQTKLFFFSPNTKQLRPSSVSSALFQCGAKRTVLGRRMVVKACVTKVEE 65
LLS P AS+ + LF S N + +P+S+ S F C +KR VL R VKAC VEE
Sbjct: 11 LLSRPTAST----STLFLLSSNLTRPKPASLPSRFFHCRSKRLVLTPRFAVKACAVNVEE 66
Query: 66 TDVNVSSESKWGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGE 125
+V S +WGKVSAVLFDMDGVLCNSEEPSRRA VD+FAEMGV+VTV+DF+PFMGTGE
Sbjct: 67 KNVAAIS-GEWGKVSAVLFDMDGVLCNSEEPSRRAGVDLFAEMGVDVTVDDFVPFMGTGE 125
Query: 126 ANFLGGVASVKGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVA 185
ANFLGGVASVKGVKGFD EAAKKRFFEIYLDKYAKP+SGIGFPGALELI+QCKSKGLKVA
Sbjct: 126 ANFLGGVASVKGVKGFDPEAAKKRFFEIYLDKYAKPDSGIGFPGALELISQCKSKGLKVA 185
Query: 186 VASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVI 245
VASSADRIKVDANLAAAGLP+SMFDAIVSADAFENLKPAPDIFL+AS+ILNVP++ECIVI
Sbjct: 186 VASSADRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAASRILNVPSNECIVI 245
Query: 246 EDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTGGGGSYNE- 304
EDALAGV+AAKAAQMRCIAV TTLS+E L+ A P+LIR IGSVSL+DIL+GG Y+
Sbjct: 246 EDALAGVEAAKAAQMRCIAVRTTLSDEALEPAGPTLIRDNIGSVSLDDILSGGSVGYSMY 305
Query: 305 --------------KIQEHELLHAASQNSTALLKEKTDNWSILDTGAADEKGSSTSGLQG 350
I HE+L+ A+ ++ L+ A GLQG
Sbjct: 306 YFSDNYSWIVLKSVDIILHEVLY-----RHAIADKRMQGSETLNDFAESSSTVLAGGLQG 360
Query: 351 SRREILRYGSLGVAFSCLFFAVSNWKAMQYASPKAIWNVLFGVNRPSFEQTEGGSSQSER 410
SRR+ILR+GSLG+A SCLFF +SNWKAMQYASPKA+WN LFGV +P EQ E +S+ +R
Sbjct: 361 SRRDILRFGSLGIAISCLFFTISNWKAMQYASPKAVWNKLFGVTQPPLEQKED-NSRDDR 419
Query: 411 IQQFVNYISDVENRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMH 470
IQQFVNYISD+E+R IVPEFP+KLDWLNTAPLQFRRDLKGKVV+LDFWTYCCINCMH
Sbjct: 420 IQQFVNYISDLESRGNAQIVPEFPSKLDWLNTAPLQFRRDLKGKVVLLDFWTYCCINCMH 479
Query: 471 VLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRE 530
VLP+L+ LEKKYKDMPF VVGVHSAKFDNEKD EAIRNAVLRYGISHPVVNDGDM LWR+
Sbjct: 480 VLPELDVLEKKYKDMPFVVVGVHSAKFDNEKDSEAIRNAVLRYGISHPVVNDGDMYLWRK 539
Query: 531 LGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFYGKKKLLDNTPLPLSLEKD 590
LG+NSWPTFA+VGPNGK+LAQLAGEGH+KDLDD VEAALLFYGK+ +LDNTP+ LSLEKD
Sbjct: 540 LGINSWPTFAIVGPNGKVLAQLAGEGHKKDLDDFVEAALLFYGKQNMLDNTPISLSLEKD 599
Query: 591 NDPRLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGS 650
NDPRL TSPLKFPGKLAID+LNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGL+DGS
Sbjct: 600 NDPRLSTSPLKFPGKLAIDVLNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLQDGS 659
Query: 651 FDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKG 710
FDDATFNRPQGLAYNAKKN+LYVADTENHALREIDFVN+ VRTLAGNGTKGSDY GG KG
Sbjct: 660 FDDATFNRPQGLAYNAKKNILYVADTENHALREIDFVNEKVRTLAGNGTKGSDYVGGGKG 719
Query: 711 TSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNT 770
SQLLNSPWDVC+ P +EK+YIAMAGQHQIWEH+ +D TR FSGDGYERNLNGSSS +T
Sbjct: 720 DSQLLNSPWDVCFHPFDEKIYIAMAGQHQIWEHNLLDATTRVFSGDGYERNLNGSSSTST 779
Query: 771 SFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGM 830
SFAQPSG+SLS D EIY+ADSESSSIRA++LKT GS+LLAGGDP+F DNLFKFGD+DG+
Sbjct: 780 SFAQPSGLSLSQDLREIYIADSESSSIRAMDLKTRGSQLLAGGDPMFADNLFKFGDQDGI 839
Query: 831 GSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQ 890
GSEVLLQHPLGV C +G+IY+ADSYNHKIKKLDP S RVST+AG GKAGFKDG A+ AQ
Sbjct: 840 GSEVLLQHPLGVVCGNDGEIYIADSYNHKIKKLDPTSKRVSTIAGTGKAGFKDGTAVKAQ 899
Query: 891 LSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKEEPELQTLELKGVQPPTPKSRSPKRLRR 950
LSEP+GI+E G LFIADTNN++IRYLDLN E EL+TLELKG+QPP PKSRS KRLRR
Sbjct: 900 LSEPSGIVEGNKGRLFIADTNNSLIRYLDLNINETELRTLELKGIQPPKPKSRSFKRLRR 959
Query: 951 RSSPDAQTIVVDGGLSNEGNIYLKISLPEEYHFSKEARSKFSVDVEPENAVIIDPLDGNL 1010
R+S D I +D SNEGN+ +KISLP EYHFSKEARS+FSVD+EPE+AV IDPLDG L
Sbjct: 960 RASADTMPITIDTISSNEGNLSIKISLPNEYHFSKEARSRFSVDIEPEDAVNIDPLDGFL 1019
Query: 1011 SPEGSAVLHFRRMSPSVSTGRISCKVYYCKEDEVCLYKPLLFEVPFQEEVPNSPPAEITL 1070
SPEGSA LHF+R S + S GRI+CKVYYCKEDEVCLY+ LLFEVPFQE V N A++TL
Sbjct: 1020 SPEGSATLHFKRSSNNASVGRINCKVYYCKEDEVCLYQSLLFEVPFQEGVSNPAEADVTL 1079
Query: 1071 PYDLKPKILTNSLQLPVAP 1089
+ +KPK T++ VAP
Sbjct: 1080 AHFVKPKTSTSNFLQSVAP 1098
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255542920|ref|XP_002512523.1| 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis] gi|223548484|gb|EEF49975.1| 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1673 bits (4333), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 829/1044 (79%), Positives = 906/1044 (86%), Gaps = 38/1044 (3%)
Query: 54 MVVKACVTKVEETDVNVSSESKWGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVT 113
M VKACV ++ V E+KW KVSAVLFDMDGVLCNSEEPSR AAVDVFAEMGV+VT
Sbjct: 1 MDVKACVKVEQKKGVAEVEETKWRKVSAVLFDMDGVLCNSEEPSRLAAVDVFAEMGVDVT 60
Query: 114 VEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALEL 173
VEDF+PFMGTGEANFLGGVA+VKGV+GF+++AAKKRFFEIYL+KYAKPNSGIGFPGALEL
Sbjct: 61 VEDFVPFMGTGEANFLGGVANVKGVQGFNTDAAKKRFFEIYLEKYAKPNSGIGFPGALEL 120
Query: 174 INQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASK 233
I QCK KGLKVAVASSADRIKVDANLAAAGLP+SMFDAIVSADAFENLKPAPDIFL+ASK
Sbjct: 121 ITQCKEKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAASK 180
Query: 234 ILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLND 293
IL VP SECIVIEDALAGVQAA+AAQMRCIAV TTLSEE L ASPSLIR +IGSVSL+D
Sbjct: 181 ILEVPPSECIVIEDALAGVQAAQAAQMRCIAVKTTLSEETLSNASPSLIRNDIGSVSLDD 240
Query: 294 ILTGGGGSYNEKIQEHELLHAASQNSTALLKEKTDNWSILDTGAADEKGSSTSGLQGSRR 353
IL+GG YN N S + A ++ S GLQ SRR
Sbjct: 241 ILSGGSDGYN-------------------------NGSFPNNIATND---SVGGLQASRR 272
Query: 354 EILRYGSLGVAFSCLFFAVSNWKAMQYASPKAIWNVLFGVNRPSFEQTEGGSSQSERIQQ 413
ILRYGSLG+A SCLFF +SNWKAMQYASP+AIWN+LF VN+ FE+ E R+QQ
Sbjct: 273 NILRYGSLGIALSCLFFTISNWKAMQYASPQAIWNLLFRVNKLDFEKNENTGKSQSRVQQ 332
Query: 414 FVNYISDVENRKTTPIVPEFPAKLDWLNTAPLQFRR---------DLKGKVVVLDFWTYC 464
FVNYISD+E R+T IVPEFPAKLDWLNTAPLQFRR +LKGKVV+LDFWTYC
Sbjct: 333 FVNYISDLETRETARIVPEFPAKLDWLNTAPLQFRRANYFSLFVQELKGKVVILDFWTYC 392
Query: 465 CINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGD 524
CINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRY ISHPVVNDGD
Sbjct: 393 CINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGD 452
Query: 525 MNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFYGKKKLLDNTPLP 584
M LWRELG++SWPTFA+VGPNGKLLAQ++GEGHRKDLD+LVEAALL+YG KK+LD+T +P
Sbjct: 453 MYLWRELGISSWPTFALVGPNGKLLAQISGEGHRKDLDELVEAALLYYGGKKILDSTSIP 512
Query: 585 LSLEKDNDPRLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEE 644
LSLEKDNDPRL TSPLKFPGKLAID+LN RLFISDSNHNRIVVTDLDGNFIVQIGS+GEE
Sbjct: 513 LSLEKDNDPRLVTSPLKFPGKLAIDVLNKRLFISDSNHNRIVVTDLDGNFIVQIGSTGEE 572
Query: 645 GLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDY 704
GLRDG FD+ATFNRPQGLAYNAKKNLLYVADTENHALREIDFVN+ VRTLAGNGTKGSDY
Sbjct: 573 GLRDGPFDEATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNEMVRTLAGNGTKGSDY 632
Query: 705 QGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNG 764
GG+KGT Q+LNSPWDVC++P+NEKVYIAMAGQHQIWEH+ DGVTRAFSGDGYERNLNG
Sbjct: 633 VGGQKGTIQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEHNNADGVTRAFSGDGYERNLNG 692
Query: 765 SSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKF 824
SSS +TSFAQPSGISLSPD E+Y+ADSESSSIR L+L TGGSRLLAGGDPIF DNLFKF
Sbjct: 693 SSSTSTSFAQPSGISLSPDLKEVYIADSESSSIRVLDLTTGGSRLLAGGDPIFSDNLFKF 752
Query: 825 GDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDG 884
GD DG+GSEVLLQHPLGV CAKNGQIYVADSYNHKIKKLDPA+ RVST+AG GKAGFKDG
Sbjct: 753 GDHDGIGSEVLLQHPLGVLCAKNGQIYVADSYNHKIKKLDPATKRVSTIAGTGKAGFKDG 812
Query: 885 AALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKEEPELQTLELKGVQPPTPKSRS 944
ALAAQLSEP+GIIEA+NG L IADTNN+IIRYLDLNKEE EL+TLELKGVQP PKS+S
Sbjct: 813 KALAAQLSEPSGIIEAENGRLIIADTNNSIIRYLDLNKEEAELRTLELKGVQPTAPKSKS 872
Query: 945 PKRLRRRSSPDAQTIVVDGGLSNEGNIYLKISLPEEYHFSKEARSKFSVDVEPENAVIID 1004
KRLRRRSS D QTI +DGG S EG++ LKISLPEEYHFSKEARSKF V+ EPENAV+ID
Sbjct: 873 LKRLRRRSSADVQTIKIDGGSSKEGDLCLKISLPEEYHFSKEARSKFIVETEPENAVLID 932
Query: 1005 PLDGNLSPEGSAVLHFRRMSPSVSTGRISCKVYYCKEDEVCLYKPLLFEVPFQEEVPNSP 1064
P DG LSPEG+A+LHFRR S S STGRI+CKVYYCKEDEVCLY+ L FEVPFQ EV +S
Sbjct: 933 PSDGYLSPEGTAILHFRRSSASASTGRINCKVYYCKEDEVCLYESLQFEVPFQ-EVQDSI 991
Query: 1065 PAEITLPYDLKPKILTNSLQLPVA 1088
P+EIT+ Y +KPK TNSLQLPV+
Sbjct: 992 PSEITVAYAVKPKASTNSLQLPVS 1015
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435944|ref|XP_004135754.1| PREDICTED: NHL repeat-containing protein 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1662 bits (4303), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 811/1096 (73%), Positives = 934/1096 (85%), Gaps = 22/1096 (2%)
Query: 2 IAMKLLS-SPPASSLSLQTKLFFFSPNTKQLRPSSVSSALFQCGAKRTVLGRRMVVKACV 60
+ +K LS SPP +L FFS K +P+SV L Q ++R V+ R+M VKACV
Sbjct: 1 MTLKYLSPSPP---FLTSARLCFFSSKLKGTKPTSVPYYLLQWRSQRLVVPRKMAVKACV 57
Query: 61 TKVEETDVNVSS-ESKWGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLP 119
KVEE+ S+ +S+WGKVSAVLFDMDGVLCNSE+ SRRAAVDVF E+GVEVT E+F+P
Sbjct: 58 -KVEESSPKESAYKSEWGKVSAVLFDMDGVLCNSEDLSRRAAVDVFRELGVEVTPEEFVP 116
Query: 120 FMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKS 179
FMGTGEANFLGGVASVKGV GF EAAKKRFFEIYL+KYAKPNSGIGFPGALELI +CKS
Sbjct: 117 FMGTGEANFLGGVASVKGVAGFSPEAAKKRFFEIYLEKYAKPNSGIGFPGALELITECKS 176
Query: 180 KGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPT 239
KGLKVAVASSADRIKVDANLAAAGLP+SMFDAIVSADAFENLKPAPDIF++ASK+LNVP+
Sbjct: 177 KGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFIAASKLLNVPS 236
Query: 240 SECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTGGG 299
ECIVIEDALAGVQAA+AA+MRCIAV TTLS+E LK A PSLIR +IG+++++DIL+GG
Sbjct: 237 DECIVIEDALAGVQAAQAAKMRCIAVKTTLSDETLKTAGPSLIRNDIGNITIHDILSGGS 296
Query: 300 GSY---------NEKIQEHELLHAASQNSTALLKEKTDNWSILDTGAADEKGSSTSGLQG 350
+Y NEKIQE + L + Q S D ++ D AA++ S L G
Sbjct: 297 DAYSIIPFSLIRNEKIQEPQFLQTSEQLSQQKYTAGIDAAAVQDLDAANDGSSPIGRLLG 356
Query: 351 SRREILRYGSLGVAFSCLFFAVSNWKAMQYASPKAIWNVLFGVNRPSFEQTEGGSSQSER 410
+RR+I+RYGSLG+AFSCL F + NWKAMQYASPKAIWN+LFGVN+PSF+ + S R
Sbjct: 357 TRRDIVRYGSLGIAFSCLIFTIRNWKAMQYASPKAIWNLLFGVNQPSFQN----NVNSGR 412
Query: 411 IQQFVNYISDVENRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMH 470
IQ+F+ YIS++E R T P+VPEFP+KLDWLNT+PLQF +DLKGKVV+LDFWTYCCINCMH
Sbjct: 413 IQRFMEYISEIETRGTAPVVPEFPSKLDWLNTSPLQFSKDLKGKVVLLDFWTYCCINCMH 472
Query: 471 VLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRE 530
VLPDLE+LEKKY D F VVGVHSAKFDNEKDLEAIRNAVLRYGI+HPVVNDGDM LWRE
Sbjct: 473 VLPDLEYLEKKYNDKAFAVVGVHSAKFDNEKDLEAIRNAVLRYGITHPVVNDGDMFLWRE 532
Query: 531 LGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFYGKKKLLDNTPLPLSLEKD 590
LG+NSWPTFA+V PNGKLLAQ++GEG RKDLDD VEAALLFYG+KK+LD+ PLPL LEKD
Sbjct: 533 LGINSWPTFAIVSPNGKLLAQISGEGRRKDLDDFVEAALLFYGEKKILDSRPLPLRLEKD 592
Query: 591 NDPRLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGS 650
NDPRL SPLKFPGKLAIDILNNRLFISDSNHNRIVVTDL GNF++QIGS+GE+GLRDG+
Sbjct: 593 NDPRLIASPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLSGNFLLQIGSTGEDGLRDGN 652
Query: 651 FDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKG 710
FDDATFNRPQGLAYNAKKNLLYVADTENHALRE+DFV + VRTLAG+G+KGSDYQGG++G
Sbjct: 653 FDDATFNRPQGLAYNAKKNLLYVADTENHALREVDFVKERVRTLAGDGSKGSDYQGGKEG 712
Query: 711 TSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNT 770
TSQLLNSPWDVC++PINEKVYIAMAGQHQIW H T++GVT++FSGDG+ERNLNGSS+ +T
Sbjct: 713 TSQLLNSPWDVCFEPINEKVYIAMAGQHQIWVHDTLNGVTKSFSGDGFERNLNGSSATST 772
Query: 771 SFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGM 830
SFAQPSG+SLSPD E+Y+ADSESSSIRA++LKTG SRLLAGGDPIF DNLFKFGD DG+
Sbjct: 773 SFAQPSGLSLSPDLSEVYIADSESSSIRAVDLKTGASRLLAGGDPIFSDNLFKFGDHDGV 832
Query: 831 GSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQ 890
GSEVLLQHPLGV+C+K+GQIYVADSYNHK+K LDP S +V+T+AG GKAGFKDG AL AQ
Sbjct: 833 GSEVLLQHPLGVFCSKDGQIYVADSYNHKVKMLDPVSKKVTTIAGTGKAGFKDGTALEAQ 892
Query: 891 LSEPAGIIEAQNGNLFIADTNNNIIRYLDL-NKEEPELQTLELKGVQPPTPKSRSPKRLR 949
LSEP+GI EA G LFIADTNNN+IRYL L N+E+ +L TLELKGVQPP PK++S KRLR
Sbjct: 893 LSEPSGITEA-GGRLFIADTNNNVIRYLYLNNREQSQLLTLELKGVQPPNPKTKSLKRLR 951
Query: 950 RRSSPDAQTIVVDGGLSNEGNIYLKISLPEEYHFSKEARSKFSVDVEPENAVIIDPLDGN 1009
RR SPD QTI+VDGG +EGN+ LKISLP+EYHFSKEARSKF+V+ EPE + IDP DG
Sbjct: 952 RR-SPDTQTIIVDGGAFSEGNLSLKISLPKEYHFSKEARSKFNVETEPETVLSIDPSDGY 1010
Query: 1010 LSPEGSAVLHFRRMSPSVSTGRISCKVYYCKEDEVCLYKPLLFEVPFQEEVPNSPPAEIT 1069
LSPEG A LHF+R SP+ S GRISCKVYYCKEDEVCLYK LLFEVPF+EEV + AEIT
Sbjct: 1011 LSPEGFASLHFKRSSPAASLGRISCKVYYCKEDEVCLYKSLLFEVPFREEVSETSKAEIT 1070
Query: 1070 LPYDLKPKILTNSLQL 1085
L +++KPK T+SL L
Sbjct: 1071 LAFEVKPKTSTSSLPL 1086
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224125014|ref|XP_002319481.1| predicted protein [Populus trichocarpa] gi|222857857|gb|EEE95404.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1660 bits (4298), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 812/1069 (75%), Positives = 912/1069 (85%), Gaps = 33/1069 (3%)
Query: 21 LFFFSPNTKQLRPSSVSSALFQCGAKRTVLGRRMVVKACVTKVEETDVNVSSESKWGKVS 80
LFFF+ N K +P S LFQ +K V ++M VKACV KVE+ + ++WGKVS
Sbjct: 26 LFFFTSNPKGSKPISSLVQLFQRRSKNLVFNKKMEVKACV-KVEQKSETEVTGNEWGKVS 84
Query: 81 AVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKG 140
AVLFDMDGVLCNSEEPSR A VDVFAEMGVEVTV+DF+PFMGTGEANFLGGVA+VKGVKG
Sbjct: 85 AVLFDMDGVLCNSEEPSRMAGVDVFAEMGVEVTVDDFVPFMGTGEANFLGGVANVKGVKG 144
Query: 141 FDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLA 200
FD+E AKKRFFEIYLDKYAKPNSGIGF GALELI QCK+KGLKVAVASSADRIKVDANLA
Sbjct: 145 FDTEMAKKRFFEIYLDKYAKPNSGIGFLGALELITQCKNKGLKVAVASSADRIKVDANLA 204
Query: 201 AAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQM 260
AAGLPVSMFDAIVSADAFENLKPAPDIFL+ASKIL VPTSECIVIEDALAGVQAAKAAQM
Sbjct: 205 AAGLPVSMFDAIVSADAFENLKPAPDIFLAASKILGVPTSECIVIEDALAGVQAAKAAQM 264
Query: 261 RCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTGGGGSYNEKIQEHELLHAASQNST 320
RCIAVTTTLSEE L +ASPSLIRKEIG++SL+DIL GG
Sbjct: 265 RCIAVTTTLSEEILNDASPSLIRKEIGNISLDDILDGG---------------------- 302
Query: 321 ALLKEKTDNWSILDTGAADEKGSSTSGLQGSRREILRYGSLGVAFSCLFFAVSNWKAMQY 380
E+T+N SIL+ A ++ SS GLQGSRR+I+RYGSLG+A SCL+F ++NWKAMQY
Sbjct: 303 ---SERTENGSILNQVATNDNVSSIKGLQGSRRDIVRYGSLGIALSCLYFTITNWKAMQY 359
Query: 381 ASPKAIWNVLFGVNRPSFEQTEGGSSQSERIQQFVNYISDVENRKTTPIVPEFPAKLDWL 440
ASPK IWN LFGV+ PSFEQ E +QFV YISD+E + IVPEFP KLDWL
Sbjct: 360 ASPKGIWNKLFGVDTPSFEQNESIGI----FKQFVKYISDLETKGNATIVPEFPGKLDWL 415
Query: 441 NTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNE 500
NT+PLQF+RDLKGKVV+LDFWTYCCINCMHVLPDLE+LEKKYKD PFTVVGVHSAKFDNE
Sbjct: 416 NTSPLQFQRDLKGKVVLLDFWTYCCINCMHVLPDLEYLEKKYKDAPFTVVGVHSAKFDNE 475
Query: 501 KDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKD 560
KDLEAIRNAVLRY ISHPVVNDGDM LWRELGV+SWPTFA+VGPNGKL+AQL+GEG RKD
Sbjct: 476 KDLEAIRNAVLRYNISHPVVNDGDMFLWRELGVSSWPTFAIVGPNGKLIAQLSGEGRRKD 535
Query: 561 LDDLVEAALLFYGKKKLLDNTPLPLSLEKDNDPRLFTSPLKFPGKLAIDILNNRLFISDS 620
LDDL+EA LL+YG++K+L++ P+PLSLEK+NDPRL +SPLKFPGKLAID+LNNRLFISDS
Sbjct: 536 LDDLIEAVLLYYGERKILNSRPIPLSLEKNNDPRLLSSPLKFPGKLAIDVLNNRLFISDS 595
Query: 621 NHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHA 680
NHNRIVVTDLDGNFI QIGSSGEEGLRDGSFDDATFNRPQGLAYN+KKN+LYVADTENHA
Sbjct: 596 NHNRIVVTDLDGNFIAQIGSSGEEGLRDGSFDDATFNRPQGLAYNSKKNILYVADTENHA 655
Query: 681 LREIDFVNDTVRTLAGNGTKGSDYQG--GEKGTSQLLNSPWDVCYKPINEKVYIAMAGQH 738
LRE+DFV++ VRTLAGNGTKGSDYQG G T +LNSPWDV ++P+NEKVYIAMAGQH
Sbjct: 656 LREVDFVSEKVRTLAGNGTKGSDYQGAFGASLTFHVLNSPWDVSFEPVNEKVYIAMAGQH 715
Query: 739 QIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIR 798
QIWEH +GVTRAFSGDGYERNLNGSS +TSFAQPSG+SLSPDF E+YVADSESSSIR
Sbjct: 716 QIWEHDISNGVTRAFSGDGYERNLNGSSPTSTSFAQPSGVSLSPDF-ELYVADSESSSIR 774
Query: 799 ALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNH 858
L+L+T G+RLLAGGDPIFPDNLFKFGD DG+GSEVLLQHPLGV AK+G IY+ADSYNH
Sbjct: 775 VLSLRTKGTRLLAGGDPIFPDNLFKFGDHDGIGSEVLLQHPLGVLHAKDGLIYIADSYNH 834
Query: 859 KIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYL 918
KIKKLD A+ RV+T+AG GKAGFKDG AL AQLSEPAG+IEA+NG L IADTNN++IRYL
Sbjct: 835 KIKKLDLATKRVTTIAGTGKAGFKDGKALTAQLSEPAGLIEAENGRLIIADTNNSVIRYL 894
Query: 919 DLNKEEPELQTLELKGVQPPTPKSRSPKRLRRRSSPDAQTIVVDGGLSNEGNIYLKISLP 978
DLNK E EL TLELKGVQPP KS+S KRLR+RSS D +TI VDG S+EGN+ +KIS+P
Sbjct: 895 DLNKGEAELLTLELKGVQPPASKSKSLKRLRKRSSADTETIKVDGCSSSEGNMRIKISVP 954
Query: 979 EEYHFSKEARSKFSVDVEPENAVIIDPLDGNLSPEGSAVLHFRRMSPSVSTGRISCKVYY 1038
EEYHFSKEARSKFSV+ EPEN V+IDP +G LS G+A +HF+R S S GRI+CKVYY
Sbjct: 955 EEYHFSKEARSKFSVETEPENTVLIDPSEGYLSSGGTASIHFKRSDASPSMGRINCKVYY 1014
Query: 1039 CKEDEVCLYKPLLFEVPFQEEVPNSPPAEITLPYDLKPKILTNSLQLPV 1087
CKEDEVCLY+ LLFEVPFQEE P+S P+EITL Y +KPK ++LQLP+
Sbjct: 1015 CKEDEVCLYQSLLFEVPFQEETPDSTPSEITLAYFVKPKSSPSNLQLPI 1063
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296089788|emb|CBI39607.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1653 bits (4281), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 806/998 (80%), Positives = 893/998 (89%), Gaps = 1/998 (0%)
Query: 86 MDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEA 145
MDGVLCNSEEPSRRA VDVF EMGV+VT EDF+PFMGTGEANFLGGVASVKGVKGFD EA
Sbjct: 1 MDGVLCNSEEPSRRAGVDVFHEMGVQVTTEDFVPFMGTGEANFLGGVASVKGVKGFDPEA 60
Query: 146 AKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLP 205
AKKRFFEIYL+KYAKPNSGIGFPGALELINQCKS GLKVAVASSADRIKVDANLAAAGLP
Sbjct: 61 AKKRFFEIYLEKYAKPNSGIGFPGALELINQCKSNGLKVAVASSADRIKVDANLAAAGLP 120
Query: 206 VSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAV 265
+SMFDAIVSADAFENLKPAPDIFL+ASKIL+VP ECIVIEDALAGVQAAKAAQMRCIAV
Sbjct: 121 LSMFDAIVSADAFENLKPAPDIFLAASKILDVPPGECIVIEDALAGVQAAKAAQMRCIAV 180
Query: 266 TTTLSEERLKEASPSLIRKEIGSVSLNDILTGGGGSYNEKIQEHELLHAASQNSTALLKE 325
TTTL EE LK A PSLIRKEIG+VS++DILTGG NEKIQ + +++ Q S +LKE
Sbjct: 181 TTTLPEETLKAAGPSLIRKEIGNVSVHDILTGGSDCPNEKIQGSQYINSFEQTSPEVLKE 240
Query: 326 KTDNWSILDTGAADEKGSSTSGLQGSRREILRYGSLGVAFSCLFFAVSNWKAMQYASPKA 385
++ SI +T + S +GLQGSRR+++RYGSLG+A SCL FAVSNWKAMQYASPKA
Sbjct: 241 GAESVSIQETNSDGGGVLSIAGLQGSRRDMVRYGSLGIALSCLAFAVSNWKAMQYASPKA 300
Query: 386 IWNVLFGVNRPSFEQTEGGSSQSERIQQFVNYISDVENRKTTPIVPEFPAKLDWLNTAPL 445
IWN+LFGVNRP+F + EG SQ+ RIQQFVNYISD+E+R VPEFP++LDWLN+APL
Sbjct: 301 IWNLLFGVNRPTFGKNEG-ESQTGRIQQFVNYISDLESRGNATTVPEFPSQLDWLNSAPL 359
Query: 446 QFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEA 505
Q RRDLKGKVVVLDFWTYCCINCMHVLPDLEFLE KYKD PFTVVGVHSAKFDNEKDLEA
Sbjct: 360 QLRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLETKYKDKPFTVVGVHSAKFDNEKDLEA 419
Query: 506 IRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLV 565
IRNAVLRYGI+HPVVNDGDM LWRELGVNSWPTFAVVGPNGKLLAQL+GEG RKDLDD+V
Sbjct: 420 IRNAVLRYGINHPVVNDGDMYLWRELGVNSWPTFAVVGPNGKLLAQLSGEGRRKDLDDIV 479
Query: 566 EAALLFYGKKKLLDNTPLPLSLEKDNDPRLFTSPLKFPGKLAIDILNNRLFISDSNHNRI 625
AAL+FYG+KK+LDN+PLPLSLEK+NDPRL TSPLKFPGKLAID++NNRLFISDSNHNRI
Sbjct: 480 AAALIFYGEKKMLDNSPLPLSLEKENDPRLLTSPLKFPGKLAIDVINNRLFISDSNHNRI 539
Query: 626 VVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREID 685
VVTDL+GN+I+QIGS+GEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREID
Sbjct: 540 VVTDLNGNYILQIGSTGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREID 599
Query: 686 FVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHST 745
FVN+TV+TLAGNGTKGSDYQGG KG +QLLNSPWDVC++PINE VYIAMAGQHQIWEH+T
Sbjct: 600 FVNETVQTLAGNGTKGSDYQGGGKGATQLLNSPWDVCFEPINEIVYIAMAGQHQIWEHNT 659
Query: 746 VDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTG 805
+DGVTRAFSGDGYERNLNG SS +TSFAQPSGISLSPD E+Y+ADSESSSIRAL+LKTG
Sbjct: 660 LDGVTRAFSGDGYERNLNGYSSTSTSFAQPSGISLSPDLKEVYIADSESSSIRALDLKTG 719
Query: 806 GSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDP 865
GSRLLAGGD +F DNLF+FGD DG+GSEVLLQHPLGV C K+GQIYVADSYNHKIKKLDP
Sbjct: 720 GSRLLAGGDTVFSDNLFRFGDHDGVGSEVLLQHPLGVSCGKDGQIYVADSYNHKIKKLDP 779
Query: 866 ASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKEEP 925
A+ RVSTLAG GKAGFKDG ALAAQLSEP+GI+E +NG LFIADTNN++IRYLDL K+E
Sbjct: 780 ATGRVSTLAGTGKAGFKDGRALAAQLSEPSGIVEVENGVLFIADTNNSVIRYLDLKKKEA 839
Query: 926 ELQTLELKGVQPPTPKSRSPKRLRRRSSPDAQTIVVDGGLSNEGNIYLKISLPEEYHFSK 985
+L TLELKGVQPP PKSRS KRLRRRSS D QTI DG SNEGN+Y++IS+PE YHFSK
Sbjct: 840 DLVTLELKGVQPPIPKSRSLKRLRRRSSADTQTITADGTSSNEGNLYIRISVPEGYHFSK 899
Query: 986 EARSKFSVDVEPENAVIIDPLDGNLSPEGSAVLHFRRMSPSVSTGRISCKVYYCKEDEVC 1045
EA+SKFS++ EPE ++I PLDG LSP G A LHFRR SPS R++CKVYYCKEDEVC
Sbjct: 900 EAQSKFSIETEPETTMVIAPLDGILSPGGFATLHFRRSSPSAFMARVNCKVYYCKEDEVC 959
Query: 1046 LYKPLLFEVPFQEEVPNSPPAEITLPYDLKPKILTNSL 1083
LY+ + FEVPF++ +P S PAEI+L Y +KPK TNSL
Sbjct: 960 LYQSVAFEVPFRDAIPGSSPAEISLDYAVKPKTPTNSL 997
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30696124|ref|NP_564718.2| haloacid dehalogenase-like hydrolase domain-containing protein [Arabidopsis thaliana] gi|17529226|gb|AAL38840.1| unknown protein [Arabidopsis thaliana] gi|332195279|gb|AEE33400.1| haloacid dehalogenase-like hydrolase domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1571 bits (4067), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 752/996 (75%), Positives = 853/996 (85%), Gaps = 30/996 (3%)
Query: 76 WGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASV 135
WGKVSAVLFDMDGVLCNSE+ SRRAAVDVF EMGVEVTV+DF+PFMGTGEA FLGGVASV
Sbjct: 71 WGKVSAVLFDMDGVLCNSEDLSRRAAVDVFTEMGVEVTVDDFVPFMGTGEAKFLGGVASV 130
Query: 136 KGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKV 195
K VKGFD +AAK+RFFEIYLDKYAKP SGIGFPGALEL+ +CK+KGLKVAVASSADRIKV
Sbjct: 131 KEVKGFDPDAAKERFFEIYLDKYAKPESGIGFPGALELVTECKNKGLKVAVASSADRIKV 190
Query: 196 DANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAA 255
DANL AAGL ++MFDAIVSADAFENLKPAPDIFL+A+KIL VPTSEC+VIEDALAGVQAA
Sbjct: 191 DANLKAAGLSLTMFDAIVSADAFENLKPAPDIFLAAAKILGVPTSECVVIEDALAGVQAA 250
Query: 256 KAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTGGGGSYNEKIQEHELLHAA 315
+AA MRCIAV TTLSE LK+A PS+IR +IG++S+NDILTGG S
Sbjct: 251 QAANMRCIAVKTTLSEAILKDAGPSMIRDDIGNISINDILTGGSDS-------------- 296
Query: 316 SQNSTALLKEKTDNWSILDTGAADEKGSSTSGLQGSRREILRYGSLGVAFSCLFFAVSNW 375
++NSTA+L+E T +D+ +S +G QGSRR+ILRYGSLG+A SC++FA +NW
Sbjct: 297 TRNSTAMLEENT---------VSDK--TSANGFQGSRRDILRYGSLGIALSCVYFAATNW 345
Query: 376 KAMQYASPKAIWNVLFGVNRPSFEQTEGGSSQSERIQQFVNYISDVENRKTTPIVPEFPA 435
KAMQYASPKA+WN L G PSF Q +G R+QQFV+YI+D+E+++T VPEFP+
Sbjct: 346 KAMQYASPKALWNALVGAKSPSFTQNQG----EGRVQQFVDYIADLESKQTATTVPEFPS 401
Query: 436 KLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSA 495
KLDWLNTAPLQFRRDLKGKVV+LDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSA
Sbjct: 402 KLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSA 461
Query: 496 KFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGE 555
KFDNEKDL+AIRNAVLRY ISHPVVNDGDM +WRELG+NSWPTFAVV PNGK++AQ+AGE
Sbjct: 462 KFDNEKDLDAIRNAVLRYDISHPVVNDGDMYMWRELGINSWPTFAVVSPNGKVIAQIAGE 521
Query: 556 GHRKDLDDLVEAALLFYGKKKLLDNTPLPLSLEKDNDPRLFTSPLKFPGKLAIDILNNRL 615
GHRKDLDD+V AAL +YG K +LD+TPLP LEKDNDPRL TSPLKFPGKLAID LNNRL
Sbjct: 522 GHRKDLDDVVAAALTYYGGKNVLDSTPLPTRLEKDNDPRLATSPLKFPGKLAIDTLNNRL 581
Query: 616 FISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVAD 675
FISDSNHNRI+VTDL+GNFIVQIGSSGEEG +DGSF+DA FNRPQGLAYNAKKNLLYVAD
Sbjct: 582 FISDSNHNRIIVTDLEGNFIVQIGSSGEEGFQDGSFEDAAFNRPQGLAYNAKKNLLYVAD 641
Query: 676 TENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA 735
TENHALREIDFVN+ V+TLAGNGTKGSDYQGG KGT QLLNSPWDVC++P+NEKVYIAMA
Sbjct: 642 TENHALREIDFVNERVQTLAGNGTKGSDYQGGRKGTKQLLNSPWDVCFEPVNEKVYIAMA 701
Query: 736 GQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESS 795
GQHQIWE+S +DG+TR FSG+GYERNLNGS+ TSFAQPSGISL PD E Y+ADSESS
Sbjct: 702 GQHQIWEYSVLDGITRVFSGNGYERNLNGSTPQTTSFAQPSGISLGPDLKEAYIADSESS 761
Query: 796 SIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADS 855
SIRAL+L+TGGSRLLAGGDP F +NLFKFGD DG+G+EVLLQHPLGV CA +GQIY+ DS
Sbjct: 762 SIRALDLQTGGSRLLAGGDPYFSENLFKFGDNDGVGAEVLLQHPLGVLCANDGQIYLTDS 821
Query: 856 YNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNII 915
YNHKIKKLDP + RV TLAG GKAGFKDG AQLSEPAG+ +NG LF+ADTNN++I
Sbjct: 822 YNHKIKKLDPVTKRVVTLAGTGKAGFKDGKVKGAQLSEPAGLAITENGRLFVADTNNSLI 881
Query: 916 RYLDLNK-EEPELQTLELKGVQPPTPKSRSPKRLRRRSSPDAQTIVVDGGLSNEGNIYLK 974
RY+DLNK E+ E+ TLELKGVQPPTPK++S KRLR+R+S D + + VD S EG++ LK
Sbjct: 882 RYIDLNKGEDSEILTLELKGVQPPTPKAKSLKRLRKRASADTKIVKVDSVTSREGDLNLK 941
Query: 975 ISLPEEYHFSKEARSKFSVDVEPENAVIIDPLDGNLSPEGSAVLHFRRMSPSVSTGRISC 1034
ISLP+ YHFSKEARSKF VDVEPENAV IDP +G LSPEGS +LHF + S S S G+ISC
Sbjct: 942 ISLPDGYHFSKEARSKFVVDVEPENAVAIDPTEGTLSPEGSTMLHFIQSSTSASVGKISC 1001
Query: 1035 KVYYCKEDEVCLYKPLLFEVPFQEEVPNSPPAEITL 1070
KVYYCKEDEVCLY+ + FEVPF+ E S IT
Sbjct: 1002 KVYYCKEDEVCLYQSVQFEVPFKVESELSASPTITF 1037
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297848174|ref|XP_002891968.1| hypothetical protein ARALYDRAFT_892829 [Arabidopsis lyrata subsp. lyrata] gi|297337810|gb|EFH68227.1| hypothetical protein ARALYDRAFT_892829 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1564 bits (4049), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 751/1021 (73%), Positives = 868/1021 (85%), Gaps = 40/1021 (3%)
Query: 66 TDVNVSSES--------KWGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDF 117
+ +NV++ES WGKVSAVLFDMDGVLCNSE+ SRRAAVDVFAEMGVEVTV+DF
Sbjct: 56 SKLNVAAESPPATIATEDWGKVSAVLFDMDGVLCNSEDLSRRAAVDVFAEMGVEVTVDDF 115
Query: 118 LPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQC 177
+PFMGTGEA FLGGVASVK VKGFD +AAKKRFFEIYLDKYAKP SGIGFPGALEL+ +C
Sbjct: 116 VPFMGTGEAKFLGGVASVKEVKGFDPDAAKKRFFEIYLDKYAKPESGIGFPGALELVTEC 175
Query: 178 KSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNV 237
K+KGLKVAVASSADRIKVDANL AAGL + MFDAIVSADAFENLKPAPDIFL+A+KIL V
Sbjct: 176 KNKGLKVAVASSADRIKVDANLKAAGLSLKMFDAIVSADAFENLKPAPDIFLAAAKILGV 235
Query: 238 PTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTG 297
PTSEC+VIEDALAGVQAA+AA MRCIAV TTLSE LK+A PS+IR +IG++S++DILTG
Sbjct: 236 PTSECVVIEDALAGVQAAQAANMRCIAVKTTLSEAILKDAGPSMIRDDIGNISISDILTG 295
Query: 298 GGGSYNEKIQEHELLHAASQNSTALLKEKTDNWSILDTGAADEKGSSTSGLQGSRREILR 357
G S ++NSTA+L+E T A+D+ +S +G QGSRR+ILR
Sbjct: 296 GSDS--------------TRNSTAILEENT---------ASDK--TSANGFQGSRRDILR 330
Query: 358 YGSLGVAFSCLFFAVSNWKAMQYASPKAIWNVLFGVNRPSFEQTEGGSSQSERIQQFVNY 417
YGSLG+A SC++FA +NWKAMQYASPKA+WN L G PSF Q +G R+QQFV+Y
Sbjct: 331 YGSLGIALSCVYFAANNWKAMQYASPKALWNALVGAKSPSFTQNQG----EGRVQQFVDY 386
Query: 418 ISDVENRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEF 477
I+D+E+++T VPEFP+KLDWLNTAPLQFRRDLKGKVV+LDFWTYCCINCMHVLPDLEF
Sbjct: 387 ITDLESKQTATAVPEFPSKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEF 446
Query: 478 LEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWP 537
LEKKYKDMPFTVVGVHSAKFDNEKDL AIRNAVLRY ISHPVVNDGDM +WRELG+NSWP
Sbjct: 447 LEKKYKDMPFTVVGVHSAKFDNEKDLNAIRNAVLRYDISHPVVNDGDMYMWRELGINSWP 506
Query: 538 TFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFYGKKKLLDNTPLPLSLEKDNDPRLFT 597
TFAVV PNGK++AQ+AGEGHRKDLDDLV AAL +YG K +LD+TPLP+ LEKDNDPRL
Sbjct: 507 TFAVVSPNGKVIAQIAGEGHRKDLDDLVAAALTYYGGKNILDSTPLPIRLEKDNDPRLAM 566
Query: 598 SPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFN 657
SPLKFPGKLAID LNNRLFISDSNHNRI+VTDL+GNFIVQIGS+GEEG +DGSF+DA FN
Sbjct: 567 SPLKFPGKLAIDTLNNRLFISDSNHNRIIVTDLEGNFIVQIGSTGEEGFQDGSFEDAAFN 626
Query: 658 RPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNS 717
RPQGLAYNAKKNLLYVADTENHALREIDFVN+ VRTLAGNGTKGSDYQGG KGT QLLNS
Sbjct: 627 RPQGLAYNAKKNLLYVADTENHALREIDFVNERVRTLAGNGTKGSDYQGGRKGTKQLLNS 686
Query: 718 PWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSG 777
PWDVC++P+NEKVY+AMAGQHQIWE++ +DG+TR FSG+GYERNLNGS+ TSFAQPSG
Sbjct: 687 PWDVCFEPVNEKVYVAMAGQHQIWEYNVLDGITRVFSGNGYERNLNGSTPQTTSFAQPSG 746
Query: 778 ISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQ 837
ISL PD E Y+ADSESSSIRAL+L+TGGSRLLAGGDP F +NLFKFGD DG+G+EVLLQ
Sbjct: 747 ISLGPDLKEAYIADSESSSIRALDLQTGGSRLLAGGDPYFSENLFKFGDNDGVGAEVLLQ 806
Query: 838 HPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGI 897
HPLGV CAK+GQIY+ DSYNHKIKKLDP + RV T+AG GKAGFKDG AQLSEPAG+
Sbjct: 807 HPLGVLCAKDGQIYLTDSYNHKIKKLDPITKRVVTVAGTGKAGFKDGKVKGAQLSEPAGL 866
Query: 898 IEAQNGNLFIADTNNNIIRYLDLNK-EEPELQTLELKGVQPPTPKSRSPKRLRRRSSPDA 956
+NG LF+ADTNN++IRY+DLNK E+ E+ TL+LKGVQ P PK++S KRLR+R+S D
Sbjct: 867 AITENGRLFVADTNNSLIRYIDLNKGEDAEILTLDLKGVQLPMPKAKSVKRLRKRASADT 926
Query: 957 QTIVVDGGLSNEGNIYLKISLPEEYHFSKEARSKFSVDVEPENAVIIDPLDGNLSPEGSA 1016
+ + VD S EG++ LKISLP+ YHFSKEARSKF VDVEPE+AV I+P++G + PEGS
Sbjct: 927 KIVKVDSVTSREGDLNLKISLPDGYHFSKEARSKFVVDVEPESAVAINPMEGYIGPEGST 986
Query: 1017 VLHFRRMSPSVSTGRISCKVYYCKEDEVCLYKPLLFEVPFQEEVPNSPPAEITLPYDLKP 1076
+LHF++ S S S G+ISCKVYYCKEDEVCLY+ + FEVPF+ E +S A T+ + +KP
Sbjct: 987 MLHFKQSSTSASVGKISCKVYYCKEDEVCLYQSVQFEVPFKVESESS--ASPTITFTVKP 1044
Query: 1077 K 1077
+
Sbjct: 1045 R 1045
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|12323029|gb|AAG51506.1|AC058785_9 hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1516 bits (3926), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 743/1039 (71%), Positives = 849/1039 (81%), Gaps = 56/1039 (5%)
Query: 45 AKRTVLGRRMVVKACVTKV----EETDVNVSSES--------KWGKVSAVLFDMDGVLCN 92
+K T G R ++K T ++V++ES WGKVSAVLFDMDGVLCN
Sbjct: 28 SKSTFTGFRSRTGVYLSKTTALQSSTKLSVAAESPAATIATDDWGKVSAVLFDMDGVLCN 87
Query: 93 SEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFE 152
SE+ SRRAAVDVF EMGVEVTV+DF+PFMGTGEA FLGGVASVK VKGFD +AAK+RFFE
Sbjct: 88 SEDLSRRAAVDVFTEMGVEVTVDDFVPFMGTGEAKFLGGVASVKEVKGFDPDAAKERFFE 147
Query: 153 IYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAI 212
IYLDKYAKP SGIGFPGALEL+ +CK+KGLKVAVASSADRIKVDANL AAGL ++MFDAI
Sbjct: 148 IYLDKYAKPESGIGFPGALELVTECKNKGLKVAVASSADRIKVDANLKAAGLSLTMFDAI 207
Query: 213 VSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEE 272
VSADAFENLKPAPDIFL+A+KIL VPTSEC+VIEDALAGVQAA+AA MRCIAV TTLSE
Sbjct: 208 VSADAFENLKPAPDIFLAAAKILGVPTSECVVIEDALAGVQAAQAANMRCIAVKTTLSEA 267
Query: 273 RLKEASPSLIRKEIGSVSLNDILTGGGGSYNEKIQEHELLHAASQNSTALLKEKTDNWSI 332
LK+A PS+IR +IG++S+NDILTGG S ++NSTA+L+E T
Sbjct: 268 ILKDAGPSMIRDDIGNISINDILTGGSDS--------------TRNSTAMLEENT----- 308
Query: 333 LDTGAADEKGSSTSGLQGSRREILRYGSLGVAFSCLFFAVSNWKAMQYASPKAIWNVLFG 392
+D+ +S +G QGSRR+ILRYGSLG+A SC++FA +NWKAMQYASPKA+WN L G
Sbjct: 309 ----VSDK--TSANGFQGSRRDILRYGSLGIALSCVYFAATNWKAMQYASPKALWNALVG 362
Query: 393 VNRPSFEQTEGGSSQSERIQQFVNYISDVENRKTTPIVPEFPAKLDWLNTAPLQFRRDLK 452
PSF Q +G R+QQFV+YI+D+E+++T VPEFP+KLDWLNTAPLQFRRDLK
Sbjct: 363 AKSPSFTQNQG----EGRVQQFVDYIADLESKQTATTVPEFPSKLDWLNTAPLQFRRDLK 418
Query: 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLR 512
GKVV+LDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDL+AIRNAVLR
Sbjct: 419 GKVVILDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLDAIRNAVLR 478
Query: 513 YGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFY 572
Y ISHPVVNDGDM +WRELG+NSWPTFAVV PNGK++AQ+AGEGHRKDLDD+V AAL +Y
Sbjct: 479 YDISHPVVNDGDMYMWRELGINSWPTFAVVSPNGKVIAQIAGEGHRKDLDDVVAAALTYY 538
Query: 573 GKKKLLDNTPLPLSLEKDNDPRLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDG 632
G K +LD+TPLP LEKDNDPRL TSPLKFPGKLAID LNNRLFISDSNHNRI+VTDL+G
Sbjct: 539 GGKNVLDSTPLPTRLEKDNDPRLATSPLKFPGKLAIDTLNNRLFISDSNHNRIIVTDLEG 598
Query: 633 NFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVR 692
NFIVQIGSSGEEG +DGSF+DA FNRPQGLAYNAKKNLLYVADTENHALREIDFVN+ V+
Sbjct: 599 NFIVQIGSSGEEGFQDGSFEDAAFNRPQGLAYNAKKNLLYVADTENHALREIDFVNERVQ 658
Query: 693 TLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRA 752
TLAGNGTKGSDYQGG KGT Q + I GQHQIWE+S +DG+TR
Sbjct: 659 TLAGNGTKGSDYQGGRKGTKQASD--------------LIQNIGQHQIWEYSVLDGITRV 704
Query: 753 FSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAG 812
FSG+GYERNLNGS+ TSFAQPSGISL PD E Y+ADSESSSIRAL+L+TGGSRLLAG
Sbjct: 705 FSGNGYERNLNGSTPQTTSFAQPSGISLGPDLKEAYIADSESSSIRALDLQTGGSRLLAG 764
Query: 813 GDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVST 872
GDP F +NLFKFGD DG+G+EVLLQHPLGV CA +GQIY+ DSYNHKIKKLDP + RV T
Sbjct: 765 GDPYFSENLFKFGDNDGVGAEVLLQHPLGVLCANDGQIYLTDSYNHKIKKLDPVTKRVVT 824
Query: 873 LAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNK-EEPELQTLE 931
LAG GKAGFKDG AQLSEPAG+ +NG LF+ADTNN++IRY+DLNK E+ E+ TLE
Sbjct: 825 LAGTGKAGFKDGKVKGAQLSEPAGLAITENGRLFVADTNNSLIRYIDLNKGEDSEILTLE 884
Query: 932 LKGVQPPTPKSRSPKRLRRRSSPDAQTIVVDGGLSNEGNIYLKISLPEEYHFSKEARSKF 991
LKGVQPPTPK++S KRLR+R+S D + + VD S EG++ LKISLP+ YHFSKEARSKF
Sbjct: 885 LKGVQPPTPKAKSLKRLRKRASADTKIVKVDSVTSREGDLNLKISLPDGYHFSKEARSKF 944
Query: 992 SVDVEPENAVIIDPLDGNLSPEGSAVLHFRRMSPSVSTGRISCKVYYCKEDEVCLYKPLL 1051
VDVEPENAV IDP +G LSPEGS +LHF + S S S G+ISCKVYYCKEDEVCLY+ +
Sbjct: 945 VVDVEPENAVAIDPTEGTLSPEGSTMLHFIQSSTSASVGKISCKVYYCKEDEVCLYQSVQ 1004
Query: 1052 FEVPFQEEVPNSPPAEITL 1070
FEVPF+ E S IT
Sbjct: 1005 FEVPFKVESELSASPTITF 1023
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|383100947|emb|CCD74491.1| haloacid dehalogenase-like hydrolase domain-containing protein [Arabidopsis halleri subsp. halleri] | Back alignment and taxonomy information |
|---|
Score = 1503 bits (3891), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 730/1021 (71%), Positives = 843/1021 (82%), Gaps = 70/1021 (6%)
Query: 66 TDVNVSSES--------KWGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDF 117
T +NV++ES WGKVSAVLFDMDGVLCNSE+ SRRAAVDVF EMGVEVTV+DF
Sbjct: 56 TKLNVAAESPPATIATEDWGKVSAVLFDMDGVLCNSEDLSRRAAVDVFTEMGVEVTVDDF 115
Query: 118 LPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQC 177
+PFMGTGEA FLGGVASVK VKGFD +AAKKRFFEIYLDKYAKP SGIGFPGALEL+N+C
Sbjct: 116 VPFMGTGEAKFLGGVASVKEVKGFDPDAAKKRFFEIYLDKYAKPESGIGFPGALELVNEC 175
Query: 178 KSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNV 237
K+KGLKVAVASSADRIKVDANL AAGL ++MFDAIVSADAFENLKPAPDIFL+A+KIL V
Sbjct: 176 KNKGLKVAVASSADRIKVDANLKAAGLSLTMFDAIVSADAFENLKPAPDIFLAAAKILGV 235
Query: 238 PTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTG 297
PTSEC+VIEDALAGVQAA+AA MRCIAV TTLSE LK+A PS+IR +IG++S++DIL+G
Sbjct: 236 PTSECVVIEDALAGVQAAQAANMRCIAVKTTLSEAILKDAGPSMIRDDIGNISISDILSG 295
Query: 298 GGGSYNEKIQEHELLHAASQNSTALLKEKTDNWSILDTGAADEKGSSTSGLQGSRREILR 357
G S ++NSTA+L+E T A+D+ +S +G QGSRR+ILR
Sbjct: 296 GSDS--------------TRNSTAILEENT---------ASDK--TSANGFQGSRRDILR 330
Query: 358 YGSLGVAFSCLFFAVSNWKAMQYASPKAIWNVLFGVNRPSFEQTEGGSSQSERIQQFVNY 417
YGSLG+A SC++FA +NWKAMQYASPKA+WN L G PSF Q +G R+QQFV+Y
Sbjct: 331 YGSLGIALSCVYFAATNWKAMQYASPKALWNALVGAKSPSFTQNQG----EGRVQQFVDY 386
Query: 418 ISDVENRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEF 477
I+D+E+++T VPEFP+KLDWLNTAPLQFRRDLKGKVV+LDFWTYCCINCMHVLPDL F
Sbjct: 387 IADLESKQTATAVPEFPSKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLAF 446
Query: 478 LEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWP 537
LEKKYKDMPFTVVGVHSAKFDNEKDL+AIRNAVLRY ISHPVVNDGDM +WRELG+NSWP
Sbjct: 447 LEKKYKDMPFTVVGVHSAKFDNEKDLDAIRNAVLRYDISHPVVNDGDMYMWRELGINSWP 506
Query: 538 TFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFYGKKKLLDNTPLPLSLEKDNDPRLFT 597
TFAVV PNGK++AQ+AGEGHRKDLDDLV AAL +YG K +LD+TPLP LEKDNDPRL T
Sbjct: 507 TFAVVSPNGKVIAQIAGEGHRKDLDDLVAAALTYYGGKNVLDSTPLPTRLEKDNDPRLAT 566
Query: 598 SPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFN 657
SPLKFPGKLAID LNNRLFISDSNHNRI+VTDL+GNFIVQIGS+GEEG +DGSF+DA FN
Sbjct: 567 SPLKFPGKLAIDTLNNRLFISDSNHNRIIVTDLEGNFIVQIGSTGEEGFQDGSFEDAAFN 626
Query: 658 RPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNS 717
RPQGLAYNAKKNLLYVADTENHALR LLNS
Sbjct: 627 RPQGLAYNAKKNLLYVADTENHALR------------------------------YLLNS 656
Query: 718 PWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSG 777
PWDVC++P+NEKVY+AMAGQHQIWE++ +DG+TR FSG+GYERNLNGS+ TSFAQPSG
Sbjct: 657 PWDVCFEPVNEKVYVAMAGQHQIWEYNVLDGITRVFSGNGYERNLNGSTPQTTSFAQPSG 716
Query: 778 ISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQ 837
ISL PD E Y+ADSESSSIRAL+L+TGGSRLLAGGDP F +NLFKFGD DG+G+EVLLQ
Sbjct: 717 ISLGPDLKEAYIADSESSSIRALDLQTGGSRLLAGGDPYFSENLFKFGDNDGVGAEVLLQ 776
Query: 838 HPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGI 897
HPLGV CAK+GQIY+ DSYNHKIKKLDP + RV T+AG GKAGFKDG AQLSEPAG+
Sbjct: 777 HPLGVLCAKDGQIYLTDSYNHKIKKLDPVTKRVVTVAGTGKAGFKDGKVKGAQLSEPAGL 836
Query: 898 IEAQNGNLFIADTNNNIIRYLDLNK-EEPELQTLELKGVQPPTPKSRSPKRLRRRSSPDA 956
+NG LF+ADTNN++IRY+DLNK E+ E+ TLELKGVQPP PK++S KRLR+R+S D
Sbjct: 837 AITENGRLFVADTNNSLIRYIDLNKGEDAEILTLELKGVQPPMPKAKSLKRLRKRASADT 896
Query: 957 QTIVVDGGLSNEGNIYLKISLPEEYHFSKEARSKFSVDVEPENAVIIDPLDGNLSPEGSA 1016
+ + VD S EG++ LKISLP+ YHFSKEARSKF VDVEPENAV IDP++GNLSPEGS
Sbjct: 897 KIVKVDSVTSREGDLNLKISLPDGYHFSKEARSKFVVDVEPENAVAIDPMEGNLSPEGST 956
Query: 1017 VLHFRRMSPSVSTGRISCKVYYCKEDEVCLYKPLLFEVPFQEEVPNSPPAEITLPYDLKP 1076
+LH+R+ S S G+ISCKVYYCKEDEVCLY+ + FEVPF+ E +S A T+ + +KP
Sbjct: 957 MLHYRQSLTSASFGKISCKVYYCKEDEVCLYQSVQFEVPFKVESESS--ASPTITFTVKP 1014
Query: 1077 K 1077
+
Sbjct: 1015 R 1015
|
Source: Arabidopsis halleri subsp. halleri Species: Arabidopsis halleri Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1089 | ||||||
| TAIR|locus:2010728 | 1055 | AT1G56500 [Arabidopsis thalian | 0.685 | 0.707 | 0.723 | 0.0 | |
| MGI|MGI:1914116 | 725 | Nhlrc2 "NHL repeat containing | 0.466 | 0.700 | 0.446 | 5.2e-113 | |
| TIGR_CMR|SO_0431 | 217 | SO_0431 "HAD-superfamily hydro | 0.167 | 0.838 | 0.296 | 3.2e-15 | |
| TIGR_CMR|DET_0395 | 456 | DET_0395 "glycoprotease family | 0.190 | 0.453 | 0.320 | 5.9e-15 | |
| UNIPROTKB|P77247 | 222 | yniC [Escherichia coli K-12 (t | 0.168 | 0.824 | 0.287 | 1.7e-11 | |
| UNIPROTKB|Q7ADF8 | 222 | yniC "2-deoxyglucose-6-phospha | 0.168 | 0.824 | 0.287 | 1.7e-11 | |
| UNIPROTKB|Q9KLE8 | 226 | VC_A0798 "CbbY family protein" | 0.153 | 0.738 | 0.286 | 1.7e-11 | |
| TIGR_CMR|VC_A0798 | 226 | VC_A0798 "haloacid dehalogenas | 0.153 | 0.738 | 0.286 | 1.7e-11 | |
| UNIPROTKB|Q10801 | 695 | dipZ "Protein DipZ" [Mycobacte | 0.185 | 0.290 | 0.280 | 2e-11 | |
| TIGR_CMR|BA_4427 | 221 | BA_4427 "hydrolase, haloacid d | 0.167 | 0.823 | 0.251 | 6e-11 |
| TAIR|locus:2010728 AT1G56500 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2923 (1034.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 553/764 (72%), Positives = 635/764 (83%)
Query: 315 ASQNSTALLKEKTDNWSILDTGAADEKGSSTSGLQGSRREILRYGSLGVAFSCLFFAVSN 374
+++NSTA+L+E T +D+ +S +G QGSRR+ILRYGSLG+A SC++FA +N
Sbjct: 296 STRNSTAMLEENT---------VSDK--TSANGFQGSRRDILRYGSLGIALSCVYFAATN 344
Query: 375 WKAMQYASPKAIWNVLFGVNRPSFEQTEGGSSQSERIQQFVNYISDVENRKTTPIVPEFP 434
WKAMQYASPKA+WN L G PSF Q +G R+QQFV+YI+D+E+++T VPEFP
Sbjct: 345 WKAMQYASPKALWNALVGAKSPSFTQNQGEG----RVQQFVDYIADLESKQTATTVPEFP 400
Query: 435 AKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHS 494
+KLDWLNTAPLQFRRDLKGKVV+LDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHS
Sbjct: 401 SKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHS 460
Query: 495 AKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAG 554
AKFDNEKDL+AIRNAVLRY ISHPVVNDGDM +WRELG+NSWPTFAVV PNGK++AQ+AG
Sbjct: 461 AKFDNEKDLDAIRNAVLRYDISHPVVNDGDMYMWRELGINSWPTFAVVSPNGKVIAQIAG 520
Query: 555 EGHRKDLDDLVEAALLFYGKKKLLDNTPLPLSLEKDNDPRLFTSPLKFPGKLAIDILNNR 614
EGHRKDLDD+V AAL +YG K +LD+TPLP LEKDNDPRL TSPLKFPGKLAID LNNR
Sbjct: 521 EGHRKDLDDVVAAALTYYGGKNVLDSTPLPTRLEKDNDPRLATSPLKFPGKLAIDTLNNR 580
Query: 615 LFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVA 674
LFISDSNHNRI+VTDL+GNFIVQIGSSGEEG +DGSF+DA FNRPQGLAYNAKKNLLYVA
Sbjct: 581 LFISDSNHNRIIVTDLEGNFIVQIGSSGEEGFQDGSFEDAAFNRPQGLAYNAKKNLLYVA 640
Query: 675 DTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAM 734
DTENHALREIDFVN+ V+TLAGNGTKGSDYQGG KGT QLLNSPWDVC++P+NEKVYIAM
Sbjct: 641 DTENHALREIDFVNERVQTLAGNGTKGSDYQGGRKGTKQLLNSPWDVCFEPVNEKVYIAM 700
Query: 735 AGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSES 794
AGQHQIWE+S +DG+TR FSG+GYERNLNGS+ TSFAQPSGISL PD E Y+ADSES
Sbjct: 701 AGQHQIWEYSVLDGITRVFSGNGYERNLNGSTPQTTSFAQPSGISLGPDLKEAYIADSES 760
Query: 795 SSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVAD 854
SSIRAL+L+TGGSRLLAGGDP F +NLFKFGD DG+G+EVLLQHPLGV CA +GQIY+ D
Sbjct: 761 SSIRALDLQTGGSRLLAGGDPYFSENLFKFGDNDGVGAEVLLQHPLGVLCANDGQIYLTD 820
Query: 855 SYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNI 914
SYNHKIKKLDP + RV TLAG GKAGFKDG AQLSEPAG+ +NG LF+ADTNN++
Sbjct: 821 SYNHKIKKLDPVTKRVVTLAGTGKAGFKDGKVKGAQLSEPAGLAITENGRLFVADTNNSL 880
Query: 915 IRYLDLNK-EEPELQTLELKGVQXXXXXXXXXXXXXXXXXXDAQTIVVDGGLSNEGNIYL 973
IRY+DLNK E+ E+ TLELKGVQ D + + VD S EG++ L
Sbjct: 881 IRYIDLNKGEDSEILTLELKGVQPPTPKAKSLKRLRKRASADTKIVKVDSVTSREGDLNL 940
Query: 974 KISLPEEYHFSKEARSKFSVDVEPENAVIIDPLDGNLSPEGSAVLHFRRMSPSVSTGRIS 1033
KISLP+ YHFSKEARSKF VDVEPENAV IDP +G LSPEGS +LHF + S S S G+IS
Sbjct: 941 KISLPDGYHFSKEARSKFVVDVEPENAVAIDPTEGTLSPEGSTMLHFIQSSTSASVGKIS 1000
Query: 1034 CKVYYCKEDEVCLYKPLLFEVPFQEEVPNSPPAEITLPYDLKPK 1077
CKVYYCKEDEVCLY+ + FEVPF+ E S A T+ + + P+
Sbjct: 1001 CKVYYCKEDEVCLYQSVQFEVPFKVESELS--ASPTITFTVTPR 1042
|
|
| MGI|MGI:1914116 Nhlrc2 "NHL repeat containing 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1115 (397.6 bits), Expect = 5.2e-113, P = 5.2e-113
Identities = 240/538 (44%), Positives = 333/538 (61%)
Query: 406 SQSERIQQFVNYISDVENRKTTPIVPEFPAKLDWLNTA-PLQFRRDLKGKVVVLDFWTYC 464
+Q E+ + Y+ V+ + VPEFP L+WLNT PL +DL GKVVVLDF+TYC
Sbjct: 30 TQQEKDELVYQYLQKVDGWEQDLAVPEFPEGLEWLNTEEPLSIYKDLCGKVVVLDFFTYC 89
Query: 465 CINCMHVLPDLEFLEKKYKDMP-FTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDG 523
CINC+HVLPDL LE+++ D +VGVHSAKF NEK L+ I++AVLRY I+HPVVND
Sbjct: 90 CINCIHVLPDLHALERRFSDKDGLLIVGVHSAKFPNEKVLDNIKSAVLRYNITHPVVNDA 149
Query: 524 DMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFYGKKKLLDNTPL 583
D +LW+EL V+ WPT ++GP G LL L GEGHR L AL +Y + + + +
Sbjct: 150 DASLWQELEVSCWPTLVILGPRGNLLFSLIGEGHRDKLFSYTSIALKYYKDRGQIRDGKI 209
Query: 584 PLSLEKDNDPRLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGE 643
+ L K++ P SPL FPGK+A+D RL ++D+ H+RI+V +G IG
Sbjct: 210 GIKLFKESLP---PSPLLFPGKVAVDHATGRLVVADTGHHRILVIQKNGRIQSSIGGPNP 266
Query: 644 EGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSD 703
G +DG F +++FN PQG+A N++YVADTENH +R+ID + V T+AG G +G+D
Sbjct: 267 -GRKDGMFSESSFNSPQGVAI--ADNVIYVADTENHLIRKIDLEAEKVTTVAGVGIQGTD 323
Query: 704 YQGGEKGTSQLLNSPWDVCYKPI------NEKVYIAMAGQHQIW----EHSTVD------ 747
+GGE+G Q ++SPWDV N+ ++IAMAG HQIW + T+
Sbjct: 324 TEGGEEGDKQPISSPWDVALGTSGSEVQRNDILWIAMAGTHQIWALLLDSGTLPKKSDLK 383
Query: 748 -GVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPD--FMEIYVADSESSSIRALNLKT 804
G F+G G E N N + FAQPSG++L+ + + ++VADSESS++R ++L+
Sbjct: 384 KGTCIRFAGSGNEENRNNAYPHKAGFAQPSGLALASEEPWSCLFVADSESSTVRTVSLRD 443
Query: 805 GGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQI-YVADSYNHKIKKL 863
G + L GG+ P NLF FGD DG G LQHPLGV + Q+ YVADSYNHKIK +
Sbjct: 444 GAVKHLVGGERD-PMNLFAFGDVDGAGINAKLQHPLGVAWDEERQVLYVADSYNHKIKVV 502
Query: 864 DPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNL-FIADTNNNIIRYLDL 920
DP + +TLAG G A + + +EP G+ ++G L ++ADTNN+ I+ +DL
Sbjct: 503 DPKTKGCTTLAGTGDASDASSSFAESAFNEPGGLCIGESGRLLYVADTNNHQIKVMDL 560
|
|
| TIGR_CMR|SO_0431 SO_0431 "HAD-superfamily hydrolase, subfamily IA, variant 3 protein family" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 205 (77.2 bits), Expect = 3.2e-15, P = 3.2e-15
Identities = 56/189 (29%), Positives = 91/189 (48%)
Query: 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGV 138
+ AV+FDMDGVL +SE +R +V + +GV VT+E G +
Sbjct: 6 IQAVIFDMDGVLIDSEPLWQRVEYEVLSALGVPVTLETIQQTTGLRIDQCVDYWYHKAPW 65
Query: 139 KGFDSEAAKKRFFEIYLDKYAKP--NSGIGFPGALELINQCKSKGLKVAVASSADRIKVD 196
+D+ K +DK A+ +G PG + + C++KGLK+ +A+S+ + +D
Sbjct: 66 ADYDNAKVSKTI----VDKVAEEILQTGEPMPGVQQAMAYCQAKGLKIGLATSSPTVLID 121
Query: 197 ANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDXXXXXXXXX 256
A LA L F A+ SA+A KP P+++L+ + L V C+ IED
Sbjct: 122 AVLARLKLK-GQFMAVESAEALTYGKPHPEVYLNCATALGVDPRYCLAIEDSFNGIIAAR 180
Query: 257 XXQMRCIAV 265
M+ +A+
Sbjct: 181 AANMQTVAI 189
|
|
| TIGR_CMR|DET_0395 DET_0395 "glycoprotease family protein/hydrolase, beta-phosphoglucomutase family" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 223 (83.6 bits), Expect = 5.9e-15, P = 5.9e-15
Identities = 69/215 (32%), Positives = 100/215 (46%)
Query: 81 AVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKG 140
AV++DMDGV+ +S RA FAE+G + DF G + V K
Sbjct: 239 AVIWDMDGVIADSAPFHMRAWQTTFAEIGYTFSEADFYRTFGLRNDMIIYSVLGEKSDAD 298
Query: 141 FDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLA 200
A ++ E +YA + FPG +EL+ K+ G ++A+ASSA + +
Sbjct: 299 TIHTLADRK--EHLFREYAGQEIQL-FPGVIELLKSLKTAGYRMAIASSAPLANIKLVMT 355
Query: 201 AAGLPVSMFDAIVSADAFENLKPAPDIFL-SASKILNVPTSECIVIEDXXXXXXXXXXXQ 259
G+ F A VS KP P IFL SA+++ P EC+VIED
Sbjct: 356 KLGIG-DYFLATVSEKDVTKGKPNPQIFLLSAARLCASP-EECLVIEDAPAGVEAAKKAG 413
Query: 260 MRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDI 294
M+CIAVT + + L EA +I +G +S+ DI
Sbjct: 414 MKCIAVTNSQQPQALSEAD--MIVDTLGKISVEDI 446
|
|
| UNIPROTKB|P77247 yniC [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 170 (64.9 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 55/191 (28%), Positives = 89/191 (46%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLP-FMGTGEANFLGGVASVK 136
++ A +FDMDG+L +SE RA +DV A +GV+++ + LP +G + + +
Sbjct: 6 QILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRRNELPDTLGLRIDMVVDLWYARQ 65
Query: 137 GVKGFDSEAAKKRFFE--IYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIK 194
G + +R I L + +P PG E + CK +GL V +AS++
Sbjct: 66 PWNGPSRQEVVERVIARAISLVEETRPL----LPGVREAVALCKEQGLLVGLASASPLHM 121
Query: 195 VDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDXXXXXXX 254
++ L L S FDA+ SA+ KP P ++L + L V C+ +ED
Sbjct: 122 LEKVLTMFDLRDS-FDALASAEKLPYSKPHPQVYLDCAAKLGVDPLTCVALEDSVNGMIA 180
Query: 255 XXXXQMRCIAV 265
+MR I V
Sbjct: 181 SKAARMRSIVV 191
|
|
| UNIPROTKB|Q7ADF8 yniC "2-deoxyglucose-6-phosphate phosphatase" [Escherichia coli O157:H7 (taxid:83334)] | Back alignment and assigned GO terms |
|---|
Score = 170 (64.9 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 55/191 (28%), Positives = 89/191 (46%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLP-FMGTGEANFLGGVASVK 136
++ A +FDMDG+L +SE RA +DV A +GV+++ + LP +G + + +
Sbjct: 6 QILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRRNELPDTLGLRIDMVVDLWYARQ 65
Query: 137 GVKGFDSEAAKKRFFE--IYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIK 194
G + +R I L + +P PG E + CK +GL V +AS++
Sbjct: 66 PWNGPSRQEVVERVIARAISLVEETRPL----LPGVREAVALCKEQGLLVGLASASPLHM 121
Query: 195 VDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDXXXXXXX 254
++ L L S FDA+ SA+ KP P ++L + L V C+ +ED
Sbjct: 122 LEKVLTMFDLRDS-FDALASAEKLPYSKPHPQVYLDCAAKLGVDPLTCVALEDSVNGMIA 180
Query: 255 XXXXQMRCIAV 265
+MR I V
Sbjct: 181 SKAARMRSIVV 191
|
|
| UNIPROTKB|Q9KLE8 VC_A0798 "CbbY family protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 170 (64.9 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 49/171 (28%), Positives = 79/171 (46%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGE-ANFLGGVASVK 136
+V V+FD +G L +SE A V VF E+GV ++ + G+ A+ L +
Sbjct: 5 RVKCVIFDCEGTLVDSERLCCEALVQVFGELGVALSYQQVAEHFSGGKIADILHAACQLA 64
Query: 137 GVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVD 196
+ D + ++R+ I + + S +G GA L+N K ++ VAS+A R K+
Sbjct: 65 KITA-DIDLLEQRYRSIVAATFRRKLSPMG--GARALLNYLKRNQIEFCVASNAPREKIA 121
Query: 197 ANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIED 247
L AGL I SA + KP PD+ + + ECI ++D
Sbjct: 122 MTLTLAGLEHYFEGRIFSAFDANSWKPEPDLIRYCAMNMGFTLDECIYVDD 172
|
|
| TIGR_CMR|VC_A0798 VC_A0798 "haloacid dehalogenase/epoxide hydrolase family protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 170 (64.9 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 49/171 (28%), Positives = 79/171 (46%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGE-ANFLGGVASVK 136
+V V+FD +G L +SE A V VF E+GV ++ + G+ A+ L +
Sbjct: 5 RVKCVIFDCEGTLVDSERLCCEALVQVFGELGVALSYQQVAEHFSGGKIADILHAACQLA 64
Query: 137 GVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVD 196
+ D + ++R+ I + + S +G GA L+N K ++ VAS+A R K+
Sbjct: 65 KITA-DIDLLEQRYRSIVAATFRRKLSPMG--GARALLNYLKRNQIEFCVASNAPREKIA 121
Query: 197 ANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIED 247
L AGL I SA + KP PD+ + + ECI ++D
Sbjct: 122 MTLTLAGLEHYFEGRIFSAFDANSWKPEPDLIRYCAMNMGFTLDECIYVDD 172
|
|
| UNIPROTKB|Q10801 dipZ "Protein DipZ" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 205 (77.2 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 59/210 (28%), Positives = 87/210 (41%)
Query: 399 EQTEGGSSQSERIQQFVNYISDVENRKTTPIVPEFPAKLDWLNTA---PLQFRRDLKGKV 455
EQ G + + Q N ++ P+ WLNT P+ + L+GKV
Sbjct: 369 EQLNLGGIVNAQNAQLSNCSDGAAQLESCGTAPDLKGITGWLNTPGNKPIDLK-SLRGKV 427
Query: 456 VVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGI 515
V++DFW Y CINC +P + + YKD V+GVH+ ++ EK + GI
Sbjct: 428 VLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGI 487
Query: 516 SHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFYGKK 575
S+P+ D + W WP ++ G + GEG + LV LL K
Sbjct: 488 SYPIALDNNYATWTNYRNRYWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQ-LLNDAKP 546
Query: 576 KLLDNTPLPLSLEK-DNDPRLFTSPLKFPG 604
+ P P S D PR +P + G
Sbjct: 547 GV--KLPQPSSTTTPDLTPRAALTPETYFG 574
|
|
| TIGR_CMR|BA_4427 BA_4427 "hydrolase, haloacid dehalogenase-like family" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 165 (63.1 bits), Expect = 6.0e-11, P = 6.0e-11
Identities = 47/187 (25%), Positives = 89/187 (47%)
Query: 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGV 138
+ A++FD DG++ ++E + D E G ++ +E+F +GT + + L + +
Sbjct: 2 MKAIIFDFDGLIVDTETIWFHSFRDAVREYGGDLPLEEFAKCIGTTD-DVLYEYLNEQLK 60
Query: 139 KGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDAN 198
+ FD A K++ ++ +K P + G E + + K GLK+A+ASS+ R V
Sbjct: 61 EKFDKYALKEKVKNLHKEKMKIPEAR---DGVKEYLEEAKEMGLKIALASSSSREWVIPF 117
Query: 199 LAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDXXXXXXXXXXX 258
L + F+ I + + E +KP P ++ A + L + +SE + ED
Sbjct: 118 LEELQIR-DYFEVIKTREDVEKVKPDPALYRVAIEDLGIDSSEAVAFEDSLNGLKAAIAA 176
Query: 259 QMRCIAV 265
+ C+ V
Sbjct: 177 GLTCVVV 183
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1089 | |||
| PLN02919 | 1057 | PLN02919, PLN02919, haloacid dehalogenase-like hyd | 0.0 | |
| cd03012 | 126 | cd03012, TlpA_like_DipZ_like, TlpA-like family, Di | 2e-59 | |
| COG0637 | 221 | COG0637, COG0637, Predicted phosphatase/phosphohex | 2e-45 | |
| TIGR02009 | 185 | TIGR02009, PGMB-YQAB-SF, beta-phosphoglucomutase f | 8e-32 | |
| cd02966 | 116 | cd02966, TlpA_like_family, TlpA-like family; compo | 8e-31 | |
| COG0546 | 220 | COG0546, Gph, Predicted phosphatases [General func | 7e-30 | |
| pfam13419 | 176 | pfam13419, HAD_2, Haloacid dehalogenase-like hydro | 5e-28 | |
| PRK10826 | 222 | PRK10826, PRK10826, 2-deoxyglucose-6-phosphatase; | 4e-25 | |
| TIGR01990 | 185 | TIGR01990, bPGM, beta-phosphoglucomutase | 2e-24 | |
| pfam00702 | 187 | pfam00702, Hydrolase, haloacid dehalogenase-like h | 3e-24 | |
| PLN02779 | 286 | PLN02779, PLN02779, haloacid dehalogenase-like hyd | 4e-24 | |
| TIGR01509 | 177 | TIGR01509, HAD-SF-IA-v3, haloacid dehalogenase sup | 2e-20 | |
| PLN02940 | 382 | PLN02940, PLN02940, riboflavin kinase | 3e-20 | |
| pfam13905 | 94 | pfam13905, Thioredoxin_8, Thioredoxin-like | 1e-17 | |
| cd01427 | 139 | cd01427, HAD_like, Haloacid dehalogenase-like hydr | 1e-16 | |
| PLN02770 | 248 | PLN02770, PLN02770, haloacid dehalogenase-like hyd | 2e-15 | |
| COG1011 | 229 | COG1011, COG1011, Predicted hydrolase (HAD superfa | 2e-15 | |
| PRK13222 | 226 | PRK13222, PRK13222, phosphoglycolate phosphatase; | 8e-15 | |
| TIGR01449 | 213 | TIGR01449, PGP_bact, 2-phosphoglycolate phosphatas | 4e-14 | |
| PRK10725 | 188 | PRK10725, PRK10725, fructose-1-P/6-phosphogluconat | 2e-13 | |
| PRK11587 | 218 | PRK11587, PRK11587, putative phosphatase; Provisio | 3e-13 | |
| PRK10563 | 221 | PRK10563, PRK10563, 6-phosphogluconate phosphatase | 6e-13 | |
| TIGR02253 | 221 | TIGR02253, CTE7, HAD superfamily (subfamily IA) hy | 6e-12 | |
| PLN02811 | 220 | PLN02811, PLN02811, hydrolase | 3e-11 | |
| pfam13242 | 74 | pfam13242, Hydrolase_like, HAD-hyrolase-like | 8e-11 | |
| PRK13223 | 272 | PRK13223, PRK13223, phosphoglycolate phosphatase; | 2e-10 | |
| TIGR01454 | 205 | TIGR01454, AHBA_synth_RP, 3-amino-5-hydroxybenoic | 2e-10 | |
| PRK03147 | 173 | PRK03147, PRK03147, thiol-disulfide oxidoreductase | 2e-09 | |
| pfam08534 | 142 | pfam08534, Redoxin, Redoxin | 2e-09 | |
| TIGR01422 | 253 | TIGR01422, phosphonatase, phosphonoacetaldehyde hy | 2e-09 | |
| COG3391 | 381 | COG3391, COG3391, Uncharacterized conserved protei | 2e-08 | |
| PLN03243 | 260 | PLN03243, PLN03243, haloacid dehalogenase-like hyd | 2e-08 | |
| TIGR01549 | 162 | TIGR01549, HAD-SF-IA-v1, haloacid dehalogenase sup | 3e-08 | |
| TIGR02252 | 203 | TIGR02252, DREG-2, REG-2-like, HAD superfamily (su | 6e-08 | |
| PLN02575 | 381 | PLN02575, PLN02575, haloacid dehalogenase-like hyd | 7e-08 | |
| TIGR03351 | 220 | TIGR03351, PhnX-like, phosphonatase-like hydrolase | 8e-08 | |
| COG0526 | 127 | COG0526, TrxA, Thiol-disulfide isomerase and thior | 1e-07 | |
| PRK13478 | 267 | PRK13478, PRK13478, phosphonoacetaldehyde hydrolas | 7e-07 | |
| PRK13288 | 214 | PRK13288, PRK13288, pyrophosphatase PpaX; Provisio | 1e-06 | |
| pfam00578 | 124 | pfam00578, AhpC-TSA, AhpC/TSA family | 1e-06 | |
| TIGR01428 | 198 | TIGR01428, HAD_type_II, 2-haloalkanoic acid dehalo | 1e-06 | |
| cd03011 | 123 | cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, | 2e-06 | |
| cd02947 | 93 | cd02947, TRX_family, TRX family; composed of two g | 3e-06 | |
| pfam01436 | 28 | pfam01436, NHL, NHL repeat | 4e-06 | |
| TIGR02247 | 211 | TIGR02247, HAD-1A3-hyp, epoxide hydrolase N-termin | 2e-05 | |
| pfam13098 | 105 | pfam13098, Thioredoxin_2, Thioredoxin-like domain | 4e-05 | |
| TIGR01993 | 183 | TIGR01993, Pyr-5-nucltdase, pyrimidine 5'-nucleoti | 4e-05 | |
| TIGR01548 | 197 | TIGR01548, HAD-SF-IA-hyp1, haloacid dehalogenase s | 7e-05 | |
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 1e-04 | |
| PRK14018 | 521 | PRK14018, PRK14018, trifunctional thioredoxin/meth | 3e-04 | |
| cd03010 | 127 | cd03010, TlpA_like_DsbE, TlpA-like family, DsbE (a | 4e-04 | |
| TIGR01668 | 170 | TIGR01668, YqeG_hyp_ppase, HAD superfamily (subfam | 4e-04 | |
| COG0560 | 212 | COG0560, SerB, Phosphoserine phosphatase [Amino ac | 6e-04 | |
| pfam01436 | 28 | pfam01436, NHL, NHL repeat | 0.001 | |
| COG2179 | 175 | COG2179, COG2179, Predicted hydrolase of the HAD s | 0.001 | |
| PRK08942 | 181 | PRK08942, PRK08942, D,D-heptose 1,7-bisphosphate p | 0.002 | |
| COG0647 | 269 | COG0647, NagD, Predicted sugar phosphatases of the | 0.002 |
| >gnl|CDD|215497 PLN02919, PLN02919, haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Score = 1933 bits (5009), Expect = 0.0
Identities = 823/1088 (75%), Positives = 905/1088 (83%), Gaps = 33/1088 (3%)
Query: 2 IAMKLLSSPPASSLSLQTKLFFFSPNTKQLRPSSVSSALFQCGAKRTVLGRRMVVKACVT 61
+A+KL S P S + F P L +S K+C
Sbjct: 1 MALKLASPPSLFSWPRRHCAGDFPPA---LAFASSIRGRRSRSGVWLGKNGGARSKSCAK 57
Query: 62 KVEETDVNVSSESKWGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFM 121
E++ + +WGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDF+PFM
Sbjct: 58 VEEKSRGAEIATEEWGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFVPFM 117
Query: 122 GTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKG 181
GTGEANFLGGVASVKGVKGFD +AAKKRFFEIYL+KYAKPNSGIGFPGALELI QCK+KG
Sbjct: 118 GTGEANFLGGVASVKGVKGFDPDAAKKRFFEIYLEKYAKPNSGIGFPGALELITQCKNKG 177
Query: 182 LKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSE 241
LKVAVASSADRIKVDANLAAAGLP+SMFDAIVSADAFENLKPAPDIFL+A+KIL VPTSE
Sbjct: 178 LKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKILGVPTSE 237
Query: 242 CIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTGGGGS 301
C+VIEDALAGVQAA+AA MRCIAVTTTLSEE LK+A PSLIRK+IG++SL+DILTGG
Sbjct: 238 CVVIEDALAGVQAARAAGMRCIAVTTTLSEEILKDAGPSLIRKDIGNISLSDILTGG--- 294
Query: 302 YNEKIQEHELLHAASQNSTALLKEKTDNWSILDTGAADEKGSSTSGLQGSRREILRYGSL 361
+ T N + +D S G QGSRR+ILRYGSL
Sbjct: 295 ----------------------SDATPNVTGMDWINTILDTGSILGFQGSRRDILRYGSL 332
Query: 362 GVAFSCLFFAVSNWKAMQYASPKAIWNVLFGVNRPSFEQTEGGSSQSERIQQFVNYISDV 421
G+A SCL+FA +NWKAMQYASPKA+WN LFGV+ PSF Q G +QQFV+YISD+
Sbjct: 333 GIALSCLYFAATNWKAMQYASPKALWNALFGVDDPSFAQNSGEG----CVQQFVSYISDL 388
Query: 422 ENRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKK 481
E++KT VPEFP KLDWLNTAPLQFRRDLKGKVV+LDFWTYCCINCMHVLPDLEFLEKK
Sbjct: 389 ESKKTATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKK 448
Query: 482 YKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAV 541
YKD PFTVVGVHSAKFDNEKDLEAIRNAVLRY ISHPVVNDGDM LWRELGV+SWPTFAV
Sbjct: 449 YKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRELGVSSWPTFAV 508
Query: 542 VGPNGKLLAQLAGEGHRKDLDDLVEAALLFYGKKKLLDNTPLPLSLEKDNDPRLFTSPLK 601
V PNGKL+AQL+GEGHRKDLDDLVEAAL +YG+KKLLD+TPLPLSLEKDNDPRL TSPLK
Sbjct: 509 VSPNGKLIAQLSGEGHRKDLDDLVEAALQYYGEKKLLDSTPLPLSLEKDNDPRLLTSPLK 568
Query: 602 FPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQG 661
FPGKLAID+LNNRLFISDSNHNRIVVTDLDGNFIVQIGS+GEEGLRDGSF+DATFNRPQG
Sbjct: 569 FPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQG 628
Query: 662 LAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDV 721
LAYNAKKNLLYVADTENHALREIDFVN+TVRTLAGNGTKGSDYQGG+KGTSQ+LNSPWDV
Sbjct: 629 LAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDV 688
Query: 722 CYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLS 781
C++P+NEKVYIAMAGQHQIWE++ DGVTR FSGDGYERNLNGSS +TSFAQPSGISLS
Sbjct: 689 CFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLS 748
Query: 782 PDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLG 841
PD E+Y+ADSESSSIRAL+LKTGGSRLLAGGDP F DNLFKFGD DG+GSEVLLQHPLG
Sbjct: 749 PDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808
Query: 842 VYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQ 901
V CAK+GQIYVADSYNHKIKKLDPA+ RV+TLAG GKAGFKDG AL AQLSEPAG+ +
Sbjct: 809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE 868
Query: 902 NGNLFIADTNNNIIRYLDLNKEE-PELQTLELKGVQPPTPKSRSPKRLRRRSSPDAQTIV 960
NG LF+ADTNN++IRYLDLNK E E+ TLELKGVQPP PKS+S KRLRRRSS D Q I
Sbjct: 869 NGRLFVADTNNSLIRYLDLNKGEAAEILTLELKGVQPPRPKSKSLKRLRRRSSADTQVIK 928
Query: 961 VDGGLSNEGNIYLKISLPEEYHFSKEARSKFSVDVEPENAVIIDPLDGNLSPEGSAVLHF 1020
VDG S EG++ LKISLP YHFSKEARSKF V+VEPENAV IDP +G LSP+G A LHF
Sbjct: 929 VDGVTSLEGDLQLKISLPPGYHFSKEARSKFEVEVEPENAVDIDPDEGTLSPDGRASLHF 988
Query: 1021 RRMSPSVSTGRISCKVYYCKEDEVCLYKPLLFEVPFQEEVPNSPPAEITLPYDLKPKILT 1080
+R S S STGRISCKVYYCKEDEVCLY+ L+FEVPF+EE + ITL Y +KPK
Sbjct: 989 KRSSASASTGRISCKVYYCKEDEVCLYQSLVFEVPFEEENGGESSSSITLKYTVKPKAPQ 1048
Query: 1081 NSLQLPVA 1088
SLQLP+
Sbjct: 1049 PSLQLPIT 1056
|
Length = 1057 |
| >gnl|CDD|239310 cd03012, TlpA_like_DipZ_like, TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain | Back alignment and domain information |
|---|
Score = 199 bits (507), Expect = 2e-59
Identities = 65/126 (51%), Positives = 80/126 (63%)
Query: 431 PEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVV 490
PEF L WLNT L+GKVV+LDFWTYCCINC+H LP L LE+KYKD V+
Sbjct: 1 PEFEGILQWLNTDKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVI 60
Query: 491 GVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLA 550
GVHS +F E+DL +++AVLRYGI++PV ND D WR G WP ++ P G +
Sbjct: 61 GVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAYGNQYWPALYLIDPTGNVRH 120
Query: 551 QLAGEG 556
GEG
Sbjct: 121 VHFGEG 126
|
Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3. Length = 126 |
| >gnl|CDD|223710 COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only] | Back alignment and domain information |
|---|
Score = 162 bits (413), Expect = 2e-45
Identities = 72/215 (33%), Positives = 109/215 (50%), Gaps = 5/215 (2%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKG 137
+ AV+FDMDG L +SE RA ++ E G+E++ E+ G G A + ++
Sbjct: 1 MIKAVIFDMDGTLVDSEPLHARAWLEALKEYGIEISDEEIRELHGGGIA---RIIDLLRK 57
Query: 138 VKGFDSEAAKKRFFEIYLDKYAKPNSGIG-FPGALELINQCKSKGLKVAVASSADRIKVD 196
+ + A + + A G+ PG +EL+ Q K++G+ +AVASS+ R +
Sbjct: 58 LAAGEDPADLAELERLLYEAEALELEGLKPIPGVVELLEQLKARGIPLAVASSSPRRAAE 117
Query: 197 ANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAK 256
LA GL FD IV+AD KPAPDI+L A++ L V EC+V+ED+ AG+QAAK
Sbjct: 118 RVLARLGLL-DYFDVIVTADDVARGKPAPDIYLLAAERLGVDPEECVVVEDSPAGIQAAK 176
Query: 257 AAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSL 291
AA MR + V L + ++
Sbjct: 177 AAGMRVVGVPAGHDRPHLDPLDAHGADTVLLDLAE 211
|
Length = 221 |
| >gnl|CDD|213673 TIGR02009, PGMB-YQAB-SF, beta-phosphoglucomutase family hydrolase | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 8e-32
Identities = 72/206 (34%), Positives = 102/206 (49%), Gaps = 40/206 (19%)
Query: 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGV 138
AV+FDMDGV+ ++ +A + A+ G+ + + S+KG+
Sbjct: 1 YKAVIFDMDGVITDTAPLHAQAWKHIAAKYGISFD-KQYN--------------ESLKGL 45
Query: 139 KGFDSEAA--KKRFFEIYLDK-----YAK--------PNSGIG-FPGALELINQCKSKGL 182
D A K R + L++ K +G+ PG L+ + K+KG+
Sbjct: 46 SREDILRAILKLRGDGLSLEEIHQLAERKNELYRELLRLTGVAVLPGIRNLLKRLKAKGI 105
Query: 183 KVAVASS---ADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPT 239
V + SS A RI LA GL FDAIV A +N KP P+ FL A+++L VP
Sbjct: 106 AVGLGSSSKNAPRI-----LAKLGL-RDYFDAIVDASEVKNGKPHPETFLLAAELLGVPP 159
Query: 240 SECIVIEDALAGVQAAKAAQMRCIAV 265
+ECIV EDALAGVQAA+AA M +AV
Sbjct: 160 NECIVFEDALAGVQAARAAGMFAVAV 185
|
This subfamily model groups together three clades: the characterized beta-phosphoglucomutases (including those from E.coli, B.subtilus and L.lactis, TIGR01990), a clade of putative bPGM's from mycobacteria and a clade including the uncharacterized E.coli and H.influenzae yqaB genes which may prove to be beta-mutases of a related 1-phosphosugar. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509). Length = 185 |
| >gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 8e-31
Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 7/123 (5%)
Query: 432 EFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVG 491
+F L DLKGKVV+++FW C C +P+LE L K+YKD VVG
Sbjct: 1 DFSLPDLDGKPVSLS---DLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVG 57
Query: 492 VHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQ 551
V+ + D A++ + +YGI+ PV+ D D L + GV PT ++ +G++ A+
Sbjct: 58 VNVD----DDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRAR 113
Query: 552 LAG 554
G
Sbjct: 114 HVG 116
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116 |
| >gnl|CDD|223620 COG0546, Gph, Predicted phosphatases [General function prediction only] | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 7e-30
Identities = 60/204 (29%), Positives = 94/204 (46%), Gaps = 5/204 (2%)
Query: 81 AVLFDMDGVLCNSEEPSRRAAVDVFAEMGVE-VTVEDFLPFMGTGEANFLGGVASVKGVK 139
A+LFD+DG L +S E RA AE+G+ + E+ +G G + +
Sbjct: 6 AILFDLDGTLVDSAEDILRAFNAALAELGLPPLDEEEIRQLIGLGLDELI--ERLLGEAD 63
Query: 140 GFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANL 199
+ +R E +L YA+ FPG EL+ KS G K+ + ++ ++D L
Sbjct: 64 EEAAAELVERLREEFLTAYAELLESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILL 123
Query: 200 AAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQ 259
A GL FD IV D KP P+ L + L + E +++ D+L + AAKAA
Sbjct: 124 KALGL-ADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEEALMVGDSLNDILAAKAAG 182
Query: 260 MRCIAVTT-TLSEERLKEASPSLI 282
+ + VT S E L +A ++
Sbjct: 183 VPAVGVTWGYNSREELAQAGADVV 206
|
Length = 220 |
| >gnl|CDD|222115 pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 5e-28
Identities = 46/185 (24%), Positives = 89/185 (48%), Gaps = 10/185 (5%)
Query: 82 VLFDMDGVLCNSEEPSRRAAVD-VFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKG 140
++FD+DG L + + A D +G++++ E+ G L + +
Sbjct: 1 IIFDLDGTLIDFDPVIFEALRDLAAERLGLDISAEELREAGGLPFDEALADLLREHPI-- 58
Query: 141 FDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLA 200
D + + E L+ +P FP +EL+ + K+KG+K+ + S+ R V+ L
Sbjct: 59 -DPDEILEALLEYNLESRLEP-----FPDVVELLRRLKAKGVKLVILSNGSREAVERLLE 112
Query: 201 AAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQM 260
GL +FDA+ ++D KP P+ + + L +P E + I+D+ ++AA+AA +
Sbjct: 113 KLGLL-DLFDAVFTSDDVGARKPDPEAYERVLERLGLPPEEILFIDDSPEDLEAARAAGI 171
Query: 261 RCIAV 265
+ + V
Sbjct: 172 KTVHV 176
|
Length = 176 |
| >gnl|CDD|236770 PRK10826, PRK10826, 2-deoxyglucose-6-phosphatase; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 4e-25
Identities = 60/207 (28%), Positives = 96/207 (46%), Gaps = 42/207 (20%)
Query: 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGV 138
+ A +FDMDG+L +SE RA +DV A +GV+++ + LP G+
Sbjct: 7 ILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRREELPD--------------TLGL 52
Query: 139 ---------------KGFDSEAAKKRFFEIYLDKYAK--PNSGIGFPGALELINQCKSKG 181
G + +R + + + PG E + CK++G
Sbjct: 53 RIDQVVDLWYARQPWNGPSRQEVVQRI----IARVISLIEETRPLLPGVREALALCKAQG 108
Query: 182 LKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENL---KPAPDIFLSASKILNVP 238
LK+ +AS++ ++A L L FDA+ SA E L KP P+++L+ + L V
Sbjct: 109 LKIGLASASPLHMLEAVLTMFDLRDY-FDALASA---EKLPYSKPHPEVYLNCAAKLGVD 164
Query: 239 TSECIVIEDALAGVQAAKAAQMRCIAV 265
C+ +ED+ G+ AAKAA+MR I V
Sbjct: 165 PLTCVALEDSFNGMIAAKAARMRSIVV 191
|
Length = 222 |
| >gnl|CDD|213672 TIGR01990, bPGM, beta-phosphoglucomutase | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-24
Identities = 62/193 (32%), Positives = 91/193 (47%), Gaps = 17/193 (8%)
Query: 81 AVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKG 140
AV+FD+DGV+ ++ E A + E+G+ E G L + G K
Sbjct: 1 AVIFDLDGVITDTAEYHYLAWKHLADELGIPFDEEFNESLKGVSREESLERIL-DLGGKK 59
Query: 141 FDSE-----AAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASS---ADR 192
+ E A +K + Y++ + PG L+ K +K+A+AS+ A
Sbjct: 60 YSEEEKEELAERKNDY--YVELLKELTPADVLPGIKSLLADLKKNNIKIALASASKNAPT 117
Query: 193 IKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGV 252
I L L + FDAIV + KP P+IFL+A++ L V SECI IEDA AG+
Sbjct: 118 I-----LEKLEL-IDYFDAIVDPAELKKGKPDPEIFLAAAEGLGVSPSECIGIEDAQAGI 171
Query: 253 QAAKAAQMRCIAV 265
+A KAA M + V
Sbjct: 172 EAIKAAGMFAVGV 184
|
This model represents the beta-phosphoglucomutase enzyme which catalyzes the interconverison of beta-D-glucose-1-phosphate and beta-D-glucose-6-phosphate. The 6-phosphate is capable of non-enzymatic anomerization (alpha <-> beta) while the 1-phosphate is not. A separate enzyme is responsible for the isomerization of the alpha anomers. Beta-D-glucose-1-phosphate results from the phosphorylysis of maltose (2.4.1.8), trehalose (2.4.1.64) or trehalose-6-phosphate (2.4.1.216). Alternatively, these reactions can be run in the synthetic direction to create the disaccharides. All sequenced genomes which contain a member of this family also appear to contain at least one putative maltose or trehalose phosphorylase. Three species, Lactococcus, Enterococcus and Neisseria appear to contain a pair of paralogous beta-PGM's. Beta-phosphoglucomutase is a member of the haloacid dehalogenase superfamily of hydrolase enzymes. These enzymes are characterized by a series of three catalytic motifs positioned within an alpha-beta (Rossman) fold. beta-PGM contains an inserted alpha helical domain in between the first and second conserved motifs and thus is a member of subfamily IA of the superfamily. The third catalytic motif comes in three variants, the third of which, containing a conserved DD or ED, is the only one found here as well as in several other related enzymes (TIGR01509). The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 185 |
| >gnl|CDD|216069 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 3e-24
Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 16/191 (8%)
Query: 79 VSAVLFDMDGVLCNSEE--PSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVK 136
+ AV+FD+DG L + E P A ++ A +GV + + G + + +
Sbjct: 1 IKAVVFDLDGTLTDGEPVVPEAEALLEAAAALGVAIVIAAGENLTKEGREELVRRLLL-R 59
Query: 137 GVKGFDSEAAKKRFFEIYLDKYAKPNSGIG------FPGALELINQCKSKGLKVAVASSA 190
+ G + R + G+ +PGA E + + K G+K+A+ +
Sbjct: 60 ALAGEELLEELLRAGATVVAVLDLVVLGLIALTDPLYPGAREALKELKEAGIKLAILTGD 119
Query: 191 DRIKVDANLAAAGLPVSMFDAIVSADAFENL---KPAPDIFLSASKILNVPTSECIVIED 247
+R+ +A GL FDA+VSAD + + KP P IF A + L V E +++ D
Sbjct: 120 NRLTANAIARLLGL----FDALVSADLYGLVGVGKPDPKIFELALEELGVKPEEVLMVGD 175
Query: 248 ALAGVQAAKAA 258
+ + AAKAA
Sbjct: 176 GVNDIPAAKAA 186
|
This family is structurally different from the alpha/beta hydrolase family (pfam00561). This family includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure of the family consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of Pseudomonas sp. (S)-2-haloacid dehalogenase 1. The rest of the fold is composed of the core alpha/beta domain. Those members with the characteristic DxD triad at the N-terminus are probably phosphatidylglycerolphosphate (PGP) phosphatases involved in cardiolipin biosynthesis in the mitochondria. Length = 187 |
| >gnl|CDD|215416 PLN02779, PLN02779, haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 4e-24
Identities = 81/269 (30%), Positives = 114/269 (42%), Gaps = 50/269 (18%)
Query: 34 SSVSSALFQCGAKRTVLGRRMVVKACVTKVEETDVNVSSESKWGKVSAVLFDMDGVLCNS 93
SS S+ L R RR ++ V+S S A+LFD DGVL +
Sbjct: 3 SSSSARLASASRTRAGRRRRRRSRSTAR--------VASASASALPEALLFDCDGVLVET 54
Query: 94 E-EPSRRAAVDVFAEMG---VEVTVE--DFLPFMGTGE----ANF-LGGVASVKGVKGFD 142
E + R A D F E G VE VE D L +G G+ F G + K
Sbjct: 55 ERDGHRVAFNDAFKEFGLRPVEWDVELYDELLNIGGGKERMTWYFNENGWPTSTIEKAPK 114
Query: 143 SEAAKKRFF--------EIYLD----KYAKPNSGIGFPGALELINQCKSKGLKVAVASSA 190
E +K E++ + PG L L+++ + G+KVAV S++
Sbjct: 115 DEEERKELVDSLHDRKTELFKELIESGALPLR-----PGVLRLMDEALAAGIKVAVCSTS 169
Query: 191 DRIKVDANLA-------AAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECI 243
+ V + A GL V + D KP PDI+ A++ L V S C+
Sbjct: 170 NEKAVSKIVNTLLGPERAQGLDV------FAGDDVPKKKPDPDIYNLAAETLGVDPSRCV 223
Query: 244 VIEDALAGVQAAKAAQMRCIAVTTTLSEE 272
V+ED++ G+QAAKAA MRCI VT +
Sbjct: 224 VVEDSVIGLQAAKAAGMRCI-VTKSSYTA 251
|
Length = 286 |
| >gnl|CDD|233443 TIGR01509, HAD-SF-IA-v3, haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 2e-20
Identities = 57/191 (29%), Positives = 88/191 (46%), Gaps = 20/191 (10%)
Query: 81 AVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKG 140
AVLFD+DGVL ++ + VD V E + +G+ E K G
Sbjct: 1 AVLFDLDGVLVDT-AHAIAKLVDRAEFPLVP--DELGVSEVGSLELAL----RRWKAKYG 53
Query: 141 FDSEAAK-----KRFF-EIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIK 194
A K+ F E + KP PG L+ +++G K+A+ +++ R
Sbjct: 54 RTMSAEDAQLLYKQLFYEALEKEGLKPL-----PGVRALLEALRARGKKLALLTNSPRAD 108
Query: 195 VDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQA 254
L GL ++FD ++ + KP PDI+L A K L + SEC+ ++D+ AG+ A
Sbjct: 109 AKLVL-ELGL-RALFDVVIDSSDVGLGKPDPDIYLQALKKLGLKPSECLFVDDSPAGIDA 166
Query: 255 AKAAQMRCIAV 265
AKAA M + V
Sbjct: 167 AKAAGMHTVLV 177
|
This model represents part of one structural subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The superfamily is defined by the presence of three short catalytic motifs. The subfamilies are defined based on the location and the observed or predicted fold of a so-called "capping domain", or the absence of such a domain. Subfamily I consists of sequences in which the capping domain is found in between the first and second catalytic motifs. Subfamily II consists of sequences in which the capping domain is found between the second and third motifs. Subfamily III sequences have no capping domain in either of these positions.The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that representing it with a single model is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only one of the variants each. Variant 3 (this model) is found in the enzymes beta-phosphoglucomutase (TIGR01990) and deoxyglucose-6-phosphatase, while many other enzymes of subfamily IA exhibit this variant as well as variant 1 (TIGR01549). These three variant models were created withthe knowledge that there will be overlap among them - this is by design and serves the purpose of eliminating the overlap with models of more distantly relatedHAD subfamilies caused by an overly broad single model [Unknown function, Enzymes of unknown specificity]. Length = 177 |
| >gnl|CDD|178528 PLN02940, PLN02940, riboflavin kinase | Back alignment and domain information |
|---|
Score = 94.1 bits (234), Expect = 3e-20
Identities = 47/98 (47%), Positives = 60/98 (61%)
Query: 168 PGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDI 227
PGA LI KS G+ +A+AS++ R ++A ++ F IV D E KP+PDI
Sbjct: 96 PGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDI 155
Query: 228 FLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAV 265
FL A+K LNV S C+VIED+L GV A KAA M IAV
Sbjct: 156 FLEAAKRLNVEPSNCLVIEDSLPGVMAGKAAGMEVIAV 193
|
Length = 382 |
| >gnl|CDD|222448 pfam13905, Thioredoxin_8, Thioredoxin-like | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 1e-17
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLR 512
GKVV+L FW C C P+L+ L +K K +V V + +E++ + + +
Sbjct: 1 GKVVLLYFWASWCPPCRAFTPELKELYEKLKKPKVEIVYVSLDR--DEEEWKKYLKKMPK 58
Query: 513 YGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGK 547
++ P + L R GV + PT ++ +G+
Sbjct: 59 DWLNVPFGDKERNELLRLYGVKAIPTLVLLDKDGR 93
|
Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 94 |
| >gnl|CDD|119389 cd01427, HAD_like, Haloacid dehalogenase-like hydrolases | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 1e-16
Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 17/115 (14%)
Query: 167 FPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSAD---------- 216
+PG E + + K KG+K+A+A++ R +V L GL FD +++++
Sbjct: 26 YPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDDY-FDPVITSNGAAIYYPKEG 84
Query: 217 ------AFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAV 265
F+ KP PD L+A K+L V E +++ D+L ++ AKAA +AV
Sbjct: 85 LFLGGGPFDIGKPNPDKLLAALKLLGVDPEEVLMVGDSLNDIEMAKAAGGLGVAV 139
|
The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases. Length = 139 |
| >gnl|CDD|215413 PLN02770, PLN02770, haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 2e-15
Identities = 65/227 (28%), Positives = 102/227 (44%), Gaps = 25/227 (11%)
Query: 71 SSESKWGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLG 130
SS S + AVLFD+DG LC+S+ P A F EM E+ +P E F+
Sbjct: 14 SSLSGLAPLEAVLFDVDGTLCDSD-PLHYYA---FREMLQEINFNGGVPIT---EEFFVE 66
Query: 131 GVASVKG------------VKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCK 178
+A +G K+ F + KP +G+ +L +
Sbjct: 67 NIAGKHNEDIALGLFPDDLERGLKFTDDKEALFRKLASEQLKPLNGL-----YKLKKWIE 121
Query: 179 SKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVP 238
+GLK A ++A R + ++ GL F A++ E+ KP PD +L A ++L V
Sbjct: 122 DRGLKRAAVTNAPRENAELMISLLGL-SDFFQAVIIGSECEHAKPHPDPYLKALEVLKVS 180
Query: 239 TSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKE 285
V ED+++G++A AA M + +TT E L EA P+ + K+
Sbjct: 181 KDHTFVFEDSVSGIKAGVAAGMPVVGLTTRNPESLLMEAKPTFLIKD 227
|
Length = 248 |
| >gnl|CDD|223943 COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.5 bits (188), Expect = 2e-15
Identities = 56/219 (25%), Positives = 95/219 (43%), Gaps = 16/219 (7%)
Query: 76 WGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVED--FLPFMGTGEANFLGGVA 133
+ A+LFD+DG L + + RA + FAE+GV T+E+ L + EA FL G
Sbjct: 1 MMMIKAILFDLDGTLLDFDSAEFRAVLAEFAEIGVPETLEELALLKLIEKLEARFLRGEY 60
Query: 134 SVKGVKGFDSEAAKKRFFEIYLDKYAKPNSGI---------GFPGALELINQCKSKGLKV 184
+ G G E + + D+ A+ + +P ALE + + K K+
Sbjct: 61 T--GEYGLTLERLLELLERLLGDEDAELVEELLAALAKLLPDYPEALEALKELGKK-YKL 117
Query: 185 AVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIV 244
+ ++ R + L GL + FDA+ ++ KP P+IF A + L VP E +
Sbjct: 118 GILTNGARPHQERKLRQLGL-LDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEALF 176
Query: 245 IEDALAG-VQAAKAAQMRCIAVTTTLSEERLKEASPSLI 282
+ D+L + A+A M+ + + +P
Sbjct: 177 VGDSLENDILGARALGMKTVWINRGGKPLPDALEAPDYE 215
|
Length = 229 |
| >gnl|CDD|237310 PRK13222, PRK13222, phosphoglycolate phosphatase; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 8e-15
Identities = 54/190 (28%), Positives = 87/190 (45%), Gaps = 8/190 (4%)
Query: 81 AVLFDMDGVLCNSEEPSRRAAVD-VFAEMGVE-VTVEDFLPFMGTGEANFLGGVASVKGV 138
AV FD+DG L +S P AAV+ A +G+ E ++G G + + G
Sbjct: 8 AVAFDLDGTLVDSA-PDLAAAVNAALAALGLPPAGEERVRTWVGNGADVLVERALTWAG- 65
Query: 139 KGFDSEAAKKRFFEIYLDKYAKPNSGIG--FPGALELINQCKSKGLKVAVASSADRIKVD 196
+ D E +K E++ YA+ +G +PG E + K+ G +AV ++ V
Sbjct: 66 REPDEELLEK-LRELFDRHYAENVAGGSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVA 124
Query: 197 ANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAK 256
L A G+ F ++ D+ N KP P L A + L + E + + D+ +QAA+
Sbjct: 125 PLLEALGI-ADYFSVVIGGDSLPNKKPDPAPLLLACEKLGLDPEEMLFVGDSRNDIQAAR 183
Query: 257 AAQMRCIAVT 266
AA + VT
Sbjct: 184 AAGCPSVGVT 193
|
Length = 226 |
| >gnl|CDD|130516 TIGR01449, PGP_bact, 2-phosphoglycolate phosphatase, prokaryotic | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 4e-14
Identities = 49/192 (25%), Positives = 84/192 (43%), Gaps = 14/192 (7%)
Query: 82 VLFDMDGVLCNSEEPSRRAAVD--VFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVK 139
VLFD+DG L +S P AAV+ + A T+ + F+G G + V + G +
Sbjct: 1 VLFDLDGTLVDSA-PDIAAAVNMALAALGLPPATLARVIGFIGNGVPVLMERVLAWAGQE 59
Query: 140 GFDSEAAK---KRFFEIYLDKYAKPNSGIG--FPGALELINQCKSKGLKVAVASSADRIK 194
D++ K F Y + + FPG + ++KGL++ + ++
Sbjct: 60 -PDAQRVAELRKLF----DRHYEEVAGELTSVFPGVEATLGALRAKGLRLGLVTNKPTPL 114
Query: 195 VDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQA 254
L GL F ++ D+ KP PD L A++ L V + + + D+ +QA
Sbjct: 115 ARPLLELLGL-AKYFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQQMVYVGDSRVDIQA 173
Query: 255 AKAAQMRCIAVT 266
A+AA + +T
Sbjct: 174 ARAAGCPSVLLT 185
|
PGP is an essential enzyme in the glycolate salvage pathway in higher organisms (photorespiration in plants). Phosphoglycolate results from the oxidase activity of RubisCO in the Calvin cycle when concentrations of carbon dioxide are low relative to oxygen. In Ralstonia (Alcaligenes) eutropha and Rhodobacter sphaeroides, the PGP gene (CbbZ) is located on an operon along with other Calvin cycle enzymes including RubisCO. The only other pertinent experimental evidence concerns the gene from E. coli. The in vitro activity of the Ralstonia and Escherichia enzymes was determined with crude cell extracts of strains containing PGP on expression plasmids and compared to controls. In E. coli, however, there does not appear to be a functional Calvin cycle (RubisCO is absent), although the E. coli PGP gene (gph) is on the same operon (dam) with ribulose-5-phosphate-3-epimerase (rpe), a gene in the pentose-phosphate pathway (along with other, unrelated genes). The E. coli enzyme is not expressed under normal laboratory conditions; the pathway to which it belongs has not been determined. In fact, the possibility exists, although unlikely, that the E. coli enzyme and others within this equivalog have as their physiological substrate another, closely related molecule. The other seed chosen for this model, from Xylella fastidiosa has no experimental evidence, but is a plant pathogen and thus may obtain phosphoglycolate from its host. This model has been restricted to encompass only proteobacteria as no related PGP has been verified outside of this clade. Sequences from Aquifex aeolicus and Treponema pallidum fall between the trusted and noise cutoffs. Just below the noise cutoff is a gene which is part of the operon for the biosynthesis of the blue pigment, indigoidine, from Erwinia (Pectobacterium) chrysanthemi, a plant pathogen. It does not seem likely, considering the proposed biosynthetic mechanism, that the dephosphorylation of phosphoglycolate or a closely related compound is required. Possibly, this gene is fortuitously located in this operon, or has an indirect relationship to the necessity for the biosynthesis of this compound. Sequences from 11 species have been annotated as PGP or putative PGP but fall below the noise cutoff. None of these have experimental validation. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702) [Energy metabolism, Sugars]. Length = 213 |
| >gnl|CDD|182679 PRK10725, PRK10725, fructose-1-P/6-phosphogluconate phosphatase; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 2e-13
Identities = 53/191 (27%), Positives = 91/191 (47%), Gaps = 14/191 (7%)
Query: 81 AVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVK--GV 138
++FDMDG + ++E R+A +V G++ + + G+ + + +
Sbjct: 7 GLIFDMDGTILDTEPTHRKAWREVLGRYGLQFDEQAMVALNGSPTWRIAQAIIELNQADL 66
Query: 139 KGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKS-KGLK-VAVASSADRIKVD 196
K + L +P L LI K+ G + +AV + ++ +
Sbjct: 67 DPHALAREKTEAVKSMLLDSVEP---------LPLIEVVKAWHGRRPMAVGTGSESAIAE 117
Query: 197 ANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAK 256
A LA GL FDA+V+AD ++ KPAPD FL ++++ V ++C+V EDA G+QAA+
Sbjct: 118 ALLAHLGL-RRYFDAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQCVVFEDADFGIQAAR 176
Query: 257 AAQMRCIAVTT 267
AA M + V
Sbjct: 177 AAGMDAVDVRL 187
|
Length = 188 |
| >gnl|CDD|183215 PRK11587, PRK11587, putative phosphatase; Provisional | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 3e-13
Identities = 62/200 (31%), Positives = 93/200 (46%), Gaps = 18/200 (9%)
Query: 83 LFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGF- 141
LFD+DG L +S RA + G+ ++ L NF+ G ++ ++ F
Sbjct: 7 LFDLDGTLVDSLPAVERAWSNWADRHGIAP--DEVL--------NFIHGKQAITSLRHFM 56
Query: 142 --DSEAAKKRFFEIYLDKY-AKPNSGI-GFPGALELINQCKSKGLKVAVASSADRIKVDA 197
SEA + F L++ A GI PGA+ L+N G+ A+ +S A
Sbjct: 57 AGASEAEIQAEF-TRLEQIEATDTEGITALPGAIALLNHLNKLGIPWAIVTSGSVPVASA 115
Query: 198 NLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKA 257
AAGLP + V+A+ + KP PD +L +++L + EC+V+EDA AGV + A
Sbjct: 116 RHKAAGLPAP--EVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECVVVEDAPAGVLSGLA 173
Query: 258 AQMRCIAVTTTLSEERLKEA 277
A IAV RL E
Sbjct: 174 AGCHVIAVNAPADTPRLDEV 193
|
Length = 218 |
| >gnl|CDD|182552 PRK10563, PRK10563, 6-phosphogluconate phosphatase; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 6e-13
Identities = 52/191 (27%), Positives = 85/191 (44%), Gaps = 23/191 (12%)
Query: 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVED-FLPFMGTGEANFLGGVASVKG 137
+ AV FD DG L +SE RA V +FAE G+ +++E+ F F G + ++ G
Sbjct: 4 IEAVFFDCDGTLVDSEVICSRAYVTMFAEFGITLSLEEVFKRFKGVKLYEIIDIISKEHG 63
Query: 138 V--------KGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASS 189
V + +E A R F+ L+ GA L+ + + V S+
Sbjct: 64 VTLAKAELEPVYRAEVA--RLFDSELEP---------IAGANALLESIT---VPMCVVSN 109
Query: 190 ADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDAL 249
K+ +L G+ D + S + KP P + A++ +NV CI+++D+
Sbjct: 110 GPVSKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVENCILVDDSS 169
Query: 250 AGVQAAKAAQM 260
AG Q+ AA M
Sbjct: 170 AGAQSGIAAGM 180
|
Length = 221 |
| >gnl|CDD|162787 TIGR02253, CTE7, HAD superfamily (subfamily IA) hydrolase, TIGR02253 | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 6e-12
Identities = 45/200 (22%), Positives = 86/200 (43%), Gaps = 22/200 (11%)
Query: 78 KVSAVLFDMDGVLCNSE---EPSRRAAVDVFAEMGVEVTVED----FLPFMGTGEANFLG 130
+ A+ FD+D L ++ E +RR A++V E G+ V E+ L + +N+
Sbjct: 1 MIKAIFFDLDDTLIDTSGLAEKARRNAIEVLIEAGLNVDFEEAYEELLKLIKEYGSNYPT 60
Query: 131 GVASVKGVKGFDSEAAKK---RFFEIYLD---KYAKPNSGIGFPGALELINQCKSKGLKV 184
+ ++ E K F Y Y + +PG + + + + G ++
Sbjct: 61 HFDYL--IRRLWEEYNPKLVAAFVYAYHKLKFAYLRV-----YPGVRDTLMELRESGYRL 113
Query: 185 AVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIV 244
+ + +K L G+ FDA+++++ KP P IF +A K L V E ++
Sbjct: 114 GIITDGLPVKQWEKLERLGV-RDFFDAVITSEEEGVEKPHPKIFYAALKRLGVKPEEAVM 172
Query: 245 IEDAL-AGVQAAKAAQMRCI 263
+ D L ++ AK M+ +
Sbjct: 173 VGDRLDKDIKGAKNLGMKTV 192
|
This family of sequences from archaea and metazoans includes the human uncharacterized protein CTE7. Pyrococcus species appear to have three different forms of this enzyme, so it is unclear whether all members of this family have the same function. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Length = 221 |
| >gnl|CDD|178407 PLN02811, PLN02811, hydrolase | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 3e-11
Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 6/110 (5%)
Query: 161 PNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFE- 219
P S + PGA L+ +KG+ +A+A+ + + D G S+ +V+ D E
Sbjct: 75 PTSDL-MPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGDDPEV 133
Query: 220 -NLKPAPDIFLSASKIL---NVPTSECIVIEDALAGVQAAKAAQMRCIAV 265
KPAPDIFL+A++ V + +V EDA +GV+AAK A M + V
Sbjct: 134 KQGKPAPDIFLAAARRFEDGPVDPGKVLVFEDAPSGVEAAKNAGMSVVMV 183
|
Length = 220 |
| >gnl|CDD|222003 pfam13242, Hydrolase_like, HAD-hyrolase-like | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 8e-11
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 222 KPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASP 279
KP P + +A + L V EC++I D+ + AA+AA +R I V T ++ E +P
Sbjct: 4 KPNPGMLRAALERLGVDPEECVMIGDSDTDILAARAAGIRTILVLTGVTTAEDLERAP 61
|
Length = 74 |
| >gnl|CDD|171912 PRK13223, PRK13223, phosphoglycolate phosphatase; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 2e-10
Identities = 61/217 (28%), Positives = 98/217 (45%), Gaps = 30/217 (13%)
Query: 82 VLFDMDGVLCNSEEPSRRAAVD-VFAEMGVEVT-VEDFLPFMGTGEANF----LGGVASV 135
V+FD+DG L +S P AAVD + E+G +E ++G G L G
Sbjct: 16 VMFDLDGTLVDSV-PDLAAAVDRMLLELGRPPAGLEAVRHWVGNGAPVLVRRALAGSIDH 74
Query: 136 KGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVA---------V 186
GV +E A F E Y D + + +PG + + K +G+++A V
Sbjct: 75 DGVDDELAEQALALFMEAYADSHELT---VVYPGVRDTLKWLKKQGVEMALITNKPERFV 131
Query: 187 ASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIE 246
A D++K+ F I+ D KP P L K+ VP S+ + +
Sbjct: 132 APLLDQMKIG----------RYFRWIIGGDTLPQKKPDPAALLFVMKMAGVPPSQSLFVG 181
Query: 247 DALAGVQAAKAAQMRCIAVTTTLSEER-LKEASPSLI 282
D+ + V AAKAA ++C+A++ + R + E SP+L+
Sbjct: 182 DSRSDVLAAKAAGVQCVALSYGYNHGRPIAEESPALV 218
|
Length = 272 |
| >gnl|CDD|130521 TIGR01454, AHBA_synth_RP, 3-amino-5-hydroxybenoic acid synthesis related protein | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 2e-10
Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 14/187 (7%)
Query: 82 VLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPF--MGTGEANFLGGVASVKGVK 139
V+FD+DGVL +S R A FA EV + PF + + + G+
Sbjct: 1 VVFDLDGVLVDSFAVMREA----FAIAYREVVGDGPAPFEEYRRHLGRYFPDIMRIMGLP 56
Query: 140 GFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANL 199
+ E R + Y FPG EL+ + ++ G+ A+A+ + + L
Sbjct: 57 L-EMEEPFVR------ESYRLAGEVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLL 109
Query: 200 AAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQ 259
A GL + +FD ++ +D KPAPDI A ++L+VP + +++ DA+ + +A+AA
Sbjct: 110 EALGL-LPLFDHVIGSDEVPRPKPAPDIVREALRLLDVPPEDAVMVGDAVTDLASARAAG 168
Query: 260 MRCIAVT 266
+A
Sbjct: 169 TATVAAL 175
|
The enzymes in this equivalog are all located in the operons for the biosynthesis of 3-amino-5-hydroxybenoic acid (AHBA), which is a precursor of several antibiotics including ansatrienin , naphthomycin , rifamycin and mitomycin. The role that this enzyme plays in this biosynthesis has not been elucidated. This enzyme is a member of the Haloacid dehalogenase superfamily (pfam00702) of aspartate-nucleophile hydrolases. This enzyme is closely related to phosphoglycolate phosphatase (TIGR01449), but it is unclear what purpose a PGPase or PGPase-like activity would serve in these biosyntheses. This model is limited to the Gram positive Actinobacteria. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity. Length = 205 |
| >gnl|CDD|179545 PRK03147, PRK03147, thiol-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 2e-09
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 5/118 (4%)
Query: 449 RDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRN 508
+DLKGK V L+FW C C +P + L KYK+ ++ V+ +E +L A++N
Sbjct: 57 KDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNV----DETEL-AVKN 111
Query: 509 AVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVE 566
V RYG++ PV D + GV PT ++ +GK++ + GE + L++ +E
Sbjct: 112 FVNRYGLTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLE 169
|
Length = 173 |
| >gnl|CDD|219888 pfam08534, Redoxin, Redoxin | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-09
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 11/107 (10%)
Query: 450 DLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRN 508
D KGK VVL+FW C C P LE L K YK VV V++ N D + N
Sbjct: 24 DFKGKKVVLNFWPGAFCPTCSAEHPYLEKLSKLYKAKGVDVVAVNA---SN--DPFFVMN 78
Query: 509 AVLRYGISHPVVNDGDMNLWRELGVNSW-----PTFAVVGPNGKLLA 550
+ G+ +PV+ D D + G+ P + ++ +GK++
Sbjct: 79 FWAKEGLKYPVLADRDGAFTKAYGLTEDAGLRTPRYFLIDEDGKVVY 125
|
This family of redoxins includes peroxiredoxin, thioredoxin and glutaredoxin proteins. Length = 142 |
| >gnl|CDD|188140 TIGR01422, phosphonatase, phosphonoacetaldehyde hydrolase | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 2e-09
Identities = 57/222 (25%), Positives = 99/222 (44%), Gaps = 23/222 (10%)
Query: 78 KVSAVLFDMDGVLCN--SEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASV 135
++ AV+FD G + S P+ A V+ FAE GV++T+E+ MG G+ + + + +
Sbjct: 1 RIEAVIFDWAGTTVDFGSFAPTG-AFVEAFAEFGVQITLEEARKPMGLGKWDHIRALLKM 59
Query: 136 KGVKG------------FDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLK 183
V D +A + F + L K A+ S I PGA+E+I +++G+K
Sbjct: 60 PAVAERWQAKFGRLPTEADVQALYEAFEPMQLAKLAEYASPI--PGAIEVIAYLRARGIK 117
Query: 184 VAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNV-PTSEC 242
+ + R +D A D V+AD +PAP + L + L V +
Sbjct: 118 IGSTTGYTREMMDVVAPEAAAQGYRPDYNVTADDVPAGRPAPWMALKNATELGVYDPAAV 177
Query: 243 IVIEDALAGVQAAKAAQMRCIAVTTT-----LSEERLKEASP 279
+ + D + ++ + A M + V + LSEE + P
Sbjct: 178 VKVGDTVPDIEEGRNAGMWTVGVILSSNELGLSEEEYRALPP 219
|
This enzyme catalyzes the cleavage of the carbon phosphorous bond of a phosphonate. The mechanism depends on the substrate having a carbonyl one carbon away from the cleavage position. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent [Central intermediary metabolism, Other]. Length = 253 |
| >gnl|CDD|225926 COG3391, COG3391, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 2e-08
Identities = 59/278 (21%), Positives = 95/278 (34%), Gaps = 60/278 (21%)
Query: 603 PGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGL 662
P +A++ N+++++ + N + V D N ++ G P GL
Sbjct: 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG--------------LGPVGL 121
Query: 663 AYNAKKNLLYVADTENHALREIDFVNDTVRTL--AGNGTKGSDYQGGEKGTSQLLNSPWD 720
A + +YVA+ N N+TV + A N + G N+P
Sbjct: 122 AVDPDGKYVYVANAGNG--------NNTVSVIDAATNKVTATIPVG---------NTPTG 164
Query: 721 VCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISL 780
V P KVY+ + +TV G SL P+GI++
Sbjct: 165 VAVDPDGNKVYVTNSD------DNTVS----VIDTSGNSVVRGSVGSLVGVGTGPAGIAV 214
Query: 781 SPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPL 840
PD +YVA+ S S L + T + A P+ + P
Sbjct: 215 DPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV-----------GSGAPRGVAVDPA 263
Query: 841 GVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGK 878
G YVA+S + +D A++RV G
Sbjct: 264 GKA------AYVANSQGGTVSVIDGATDRVVKTGPTGN 295
|
Length = 381 |
| >gnl|CDD|215644 PLN03243, PLN03243, haloacid dehalogenase-like hydrolase; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 2e-08
Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 168 PGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDI 227
PG+ E + K + +AVAS+ R ++ + A G+ F +++A+ KP P++
Sbjct: 112 PGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGME-GFFSVVLAAEDVYRGKPDPEM 170
Query: 228 FLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTT 268
F+ A++ L CIV ++ + V+AA M+C+AV
Sbjct: 171 FMYAAERLGFIPERCIVFGNSNSSVEAAHDGCMKCVAVAGK 211
|
Length = 260 |
| >gnl|CDD|233463 TIGR01549, HAD-SF-IA-v1, haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 3e-08
Identities = 47/184 (25%), Positives = 76/184 (41%), Gaps = 27/184 (14%)
Query: 81 AVLFDMDGVLCNSEEPSRRAAVDVFAEMGVE-VTVEDFLPFMGTGEANFL----GGVASV 135
A+LFD+DG L + + RRA F E G+ + G E + +
Sbjct: 1 AILFDIDGTLVDIKFAIRRAFAQTFEEFGLNPAAFKRLKALRGLAEELLWRIATEALEEL 60
Query: 136 KGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKV 195
+G G+D+E A PGA +L+ + K G+K+ + S+
Sbjct: 61 QGHIGYDAEEAY-------------------IPGAADLLPRLKEAGIKLGIISNGSLRAQ 101
Query: 196 DANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAA 255
L GL + S + KP P+IFL+A + L VP E + + D L+ ++ A
Sbjct: 102 KLLLRKHGLGDYFELILGSDEIGS--KPEPEIFLAALESLGVPP-EVLHVGDNLSDIKGA 158
Query: 256 KAAQ 259
+ A
Sbjct: 159 RNAG 162
|
This model represents part of one structural subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The superfamily is defined by the presence of three short catalytic motifs. The subfamilies are defined based on the location and the observed or predicted fold of a so-called "capping domain", or the absence of such a domain. Subfamily I consists of sequences in which the capping domain is found in between the first and second catalytic motifs. Subfamily II consists of sequences in which the capping domain is found between the second and third motifs. Subfamily III sequences have no capping domain in either of these positions.The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single representation is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)(D/E), (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only one of the variants each. Variant 1 (this model) is found in the enzymes phosphoglycolate phosphatase (TIGR01449) and enolase-phosphatase. These three variant models (see also TIGR01493 and TIGR01509) were created withthe knowledge that there will be overlap among them - this is by design and serves the purpose of eliminating the overlap with models of more distantly relatedHAD subfamilies caused by an overly broad single model [Unknown function, Enzymes of unknown specificity]. Length = 162 |
| >gnl|CDD|200170 TIGR02252, DREG-2, REG-2-like, HAD superfamily (subfamily IA) hydrolase | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 6e-08
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 3/131 (2%)
Query: 132 VASVKGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSAD 191
V G G + ++ FE +A P +P A++L+ + +GL + V S+ D
Sbjct: 72 VRDTFGRAGVPDPESFEKIFEELYSYFATPEPWQVYPDAIKLLKDLRERGLILGVISNFD 131
Query: 192 RIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDAL-A 250
+ L A GL + FD +V++ KP P IF A + + E + I D+L
Sbjct: 132 SR-LRGLLEALGL-LEYFDFVVTSYEVGAEKPDPKIFQEALERAGISPEEALHIGDSLRN 189
Query: 251 GVQAAKAAQMR 261
Q A+AA R
Sbjct: 190 DYQGARAAGWR 200
|
This family of proteins includes uncharacterized sequences from eukaryotes, cyanobacteria and Leptospira as well as the DREG-2 protein from Drosophila melanogaster which has been identified as a rhythmically (diurnally) regulated gene. This family is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The superfamily is defined by the presence of three short catalytic motifs. The subfamilies are defined based on the location and the observed or predicted fold of a so-called 'capping domain', or the absence of such a domain. This family is a member of subfamily 1A in which the cap domain consists of a predicted alpha helical bundle found in between the first and second catalytic motifs. A distinctive feature of this family is a conserved tandem pair of tryptophan residues in the cap domain. The most divergent sequences included within the scope of this model are from plants and have "FW" at this position instead. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes. Length = 203 |
| >gnl|CDD|215313 PLN02575, PLN02575, haloacid dehalogenase-like hydrolase | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 7e-08
Identities = 29/99 (29%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Query: 169 GALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIF 228
G+ E +N + + +A+ S+ R ++ + + G+ F IV+A+ KP P++F
Sbjct: 220 GSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIR-GFFSVIVAAEDVYRGKPDPEMF 278
Query: 229 LSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTT 267
+ A+++LN CIV ++ V+AA A+M+C+AV +
Sbjct: 279 IYAAQLLNFIPERCIVFGNSNQTVEAAHDARMKCVAVAS 317
|
Length = 381 |
| >gnl|CDD|234176 TIGR03351, PhnX-like, phosphonatase-like hydrolase | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 8e-08
Identities = 49/207 (23%), Positives = 79/207 (38%), Gaps = 6/207 (2%)
Query: 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFL-PFMGTGEANFLGGVASVKG 137
+S V+ DM G + + RA G+ T E+ +MG + + + + G
Sbjct: 1 ISLVVLDMAGTTVDEDGLVYRALRQAVTAAGLSPTPEEVQSAWMGQSKIEAIRALLAADG 60
Query: 138 VKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDA 197
+++AA F E + Y + PGA E +S G+KVA+ + DR +
Sbjct: 61 ADEAEAQAAFADFEERLAEAYDD-GPPVALPGAEEAFRSLRSSGIKVALTTGFDRDTAER 119
Query: 198 NLAAAGLPV-SMFDAIVSADAFENLKPAPDIFLSASKILNVPT-SECIVIEDALAGVQAA 255
L G V DA+V +PAPD+ L A ++ V V D ++A
Sbjct: 120 LLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTGVQDVQSVAVAGDTPNDLEAG 179
Query: 256 KAAQMRCIAVTTT--LSEERLKEASPS 280
A + T E L +
Sbjct: 180 INAGAGAVVGVLTGAHDAEELSRHPHT 206
|
This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the substrate is also, like Pald, a 2-oxo-ethylphosphonate. Despite this, the genomic context of members of this family are quite distinct from PhnX, which is almost invariably associated with the 2-aminoethylphosphonate transaminase PhnW (TIGR02326), the source of the substrate Pald. Members of this clade are never associated with PhnW, but rather associate with families of FAD-dependent oxidoreductases related to deaminating amino acid oxidases (pfam01266) as well as zinc-dependent dehydrogenases (pfam00107). Notably, family members from Arthrobacter aurescens TC1 and Nocardia farcinica IFM 10152 are adjacent to the PhnCDE ABC cassette phosphonates transporter (GenProp0236) typically found in association with the phosphonates C-P lyase system (GenProp0232). These observations suggest two possibilities. First, the substrate for this enzyme family is also Pald, the non-association with PhnW not withstanding. Alternatively, the substrate is something very closely related such as hydroxyphosphonoacetaldehyde (Hpald). Hpald could come from oxidative deamination of 1-hydroxy-2-aminoethylphosphonate (HAEP) by the associated oxidase. HAEP would not be a substrate for PhnW due to its high specificity for AEP. HAEP has been shown to be a constituent of the sphingophosphonolipid of Bacteriovorax stolpii, and presumably has other natural sources. If Hpald is the substrate, the product would be glycoaldehyde (hydroxyacetaldehyde), and the associated alcohol dehydrogenase may serve to convert this to glycol. Length = 220 |
| >gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Score = 51.4 bits (122), Expect = 1e-07
Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNA 509
+LKGK V++DFW C C P LE L ++Y VV V+ D DL A
Sbjct: 29 ELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD--DENPDLAAEFGV 85
Query: 510 VLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLA 550
+R + + DG G P A++ G+LLA
Sbjct: 86 AVRSIPTLLLFKDGKEVDRLV-GGKVLPKEALIDALGELLA 125
|
Length = 127 |
| >gnl|CDD|184075 PRK13478, PRK13478, phosphonoacetaldehyde hydrolase; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 7e-07
Identities = 64/232 (27%), Positives = 101/232 (43%), Gaps = 41/232 (17%)
Query: 77 GKVSAVLFDMDGVLCN--SEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTG-----EANFL 129
K+ AV+FD G + S P++ A V+ FA+ GVE+T+E+ MG G A L
Sbjct: 2 MKIQAVIFDWAGTTVDFGSFAPTQ-AFVEAFAQFGVEITLEEARGPMGLGKWDHIRA--L 58
Query: 130 GGVASV----KGVKGF-----DSEAAKKRFFEIYLDK---YAKPNSGIGFPGALELINQC 177
+ V + V G D +A F + + K YA P PG LE+I
Sbjct: 59 LKMPRVAARWQAVFGRLPTEADVDALYAAFEPLQIAKLADYATP-----IPGVLEVIAAL 113
Query: 178 KSKGLKVAVASSADRI---KVDANLAAAGL-PVSMFDAIVSADAFENLKPAPDIFLSASK 233
+++G+K+ + R V AA G P D +V+ D +P P + L +
Sbjct: 114 RARGIKIGSTTGYTREMMDVVVPLAAAQGYRP----DHVVTTDDVPAGRPYPWMALKNAI 169
Query: 234 ILNV-PTSECIVIEDALAGVQAAKAAQMRCIAVTTT-----LSEERLKEASP 279
L V + C+ ++D + G++ A M + V + LSEE + S
Sbjct: 170 ELGVYDVAACVKVDDTVPGIEEGLNAGMWTVGVILSGNELGLSEEEYQALSA 221
|
Length = 267 |
| >gnl|CDD|237336 PRK13288, PRK13288, pyrophosphatase PpaX; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 49/211 (23%), Positives = 83/211 (39%), Gaps = 23/211 (10%)
Query: 77 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEM-GVEVTVEDFLPFMGTGEANFLGGVASV 135
K++ VLFD+DG L N+ E + + + ED LPF+G +
Sbjct: 1 MKINTVLFDLDGTLINTNELIISSFLHTLKTYYPNQYKREDVLPFIGP---------SLH 51
Query: 136 KGVKGFDSEAAKK-----RFFEIYL-DKYAKPNSGIGFPGALELINQCKSKGLKVAVASS 189
D ++ R F D+ + E + K +G K+ + ++
Sbjct: 52 DTFSKIDESKVEEMITTYREFNHEHHDELVTE-----YETVYETLKTLKKQGYKLGIVTT 106
Query: 190 ADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDAL 249
R V+ L GL FD +++ D E+ KP P+ L A ++L E +++ D
Sbjct: 107 KMRDTVEMGLKLTGLD-EFFDVVITLDDVEHAKPDPEPVLKALELLGAKPEEALMVGDNH 165
Query: 250 AGVQAAKAAQMRCIAVT-TTLSEERLKEASP 279
+ A K A + V T E L++ P
Sbjct: 166 HDILAGKNAGTKTAGVAWTIKGREYLEQYKP 196
|
Length = 214 |
| >gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 1e-06
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 450 DLKGKVVVLDFWTYC-CINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRN 508
D KGK VVL F+ C LP L L +++K + V+GV S D+ + +
Sbjct: 22 DYKGKWVVLFFYPKDFTPVCTTELPALADLYEEFKKLGVEVLGV-SV--DSPESHKKFAE 78
Query: 509 AVLRYGISHPVVNDGDMNLWRELGVN------SWPTFAVVGPNGKL 548
+ G+ P+++D D + + GV + T V+ P+GK+
Sbjct: 79 ---KLGLPFPLLSDPDGEVAKAYGVLNEEEGLALRTTFVIDPDGKI 121
|
This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 124 |
| >gnl|CDD|130495 TIGR01428, HAD_type_II, 2-haloalkanoic acid dehalogenase, type II | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 40/180 (22%), Positives = 69/180 (38%), Gaps = 32/180 (17%)
Query: 80 SAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFL-------------PFMGTGEA 126
A++FD+ G L + +++ G ++ P+ +
Sbjct: 2 KALVFDVYGTLFD-VHSVVERFAELYGGRGEALSQLWRQKQLEYSWLRTLMGPYADFWDL 60
Query: 127 -----NFLGGVASVKGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKG 181
+L G ++ D E+A R E YL P + K +G
Sbjct: 61 TREALRYLLGRLGLE-----DDESAADRLAEAYLRLPP-------HPDVPAGLRALKERG 108
Query: 182 LKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSE 241
++A+ S+ + + + AGL FDA++SADA KPAP ++ A + L VP E
Sbjct: 109 YRLAILSNGSPAMLKSLVKHAGLD-DPFDAVLSADAVRAYKPAPQVYQLALEALGVPPDE 167
|
Catalyzes the hydrolytic dehalogenation of small L-2-haloalkanoic acids to yield the corresponding D-2-hydroxyalkanoic acids. Belongs to the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), class (subfamily) I. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related. Length = 198 |
| >gnl|CDD|239309 cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-06
Identities = 32/117 (27%), Positives = 44/117 (37%), Gaps = 12/117 (10%)
Query: 431 PEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVV 490
P F A L+ L GK V++ FW C C P + L Y VV
Sbjct: 1 PLFTATT--LDGEQFDLES-LSGKPVLVYFWATWCPVCRFTSPTVNQLAADY-----PVV 52
Query: 491 GVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGK 547
V D+ A+ + + G PV+ND D + GV+ P +V P G
Sbjct: 53 SVALRSGDDG----AVARFMQKKGYGFPVINDPDGVISARWGVSVTPAIVIVDPGGI 105
|
The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. Length = 123 |
| >gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 3e-06
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 31/122 (25%)
Query: 446 QFRRDLK-GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLE 504
+F +K K VV+DFW C C + P LE L ++Y + F K D +++ E
Sbjct: 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKF-------VKVDVDENPE 54
Query: 505 AIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDL 564
L E GV S PTF NGK + ++ G +++L++
Sbjct: 55 ----------------------LAEEYGVRSIPTFLFFK-NGKEVDRVVGADPKEELEEF 91
Query: 565 VE 566
+E
Sbjct: 92 LE 93
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93 |
| >gnl|CDD|110440 pfam01436, NHL, NHL repeat | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 4e-06
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 836 LQHPLGVYCAKNGQIYVADSYNHKIKKL 863
P GV +G +YVADS NH+++
Sbjct: 1 FNRPHGVAVDSDGDVYVADSENHRVQVF 28
|
The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies. It is about 40 residues long and resembles the WD repeat pfam00400. The repeats have a catalytic activity in bovine PAM (peptidyl-glycine alpha-amidating monooxygenase), proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localised to the repeats. Human E3 ubiquitin-protein ligase TRIM32 interacts with the activation domain of Tat. This interaction is me diated by the NHL repeats. Length = 28 |
| >gnl|CDD|233800 TIGR02247, HAD-1A3-hyp, epoxide hydrolase N-terminal domain-like phosphatase | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 48/200 (24%), Positives = 76/200 (38%), Gaps = 19/200 (9%)
Query: 79 VSAVLFDMDGVLCNSEEPSRRAAVD--VFAEMGVEVTVE----DFLPFMG---TGE---A 126
+ AV+FD GVL S RR + + VTV DF P+ GE
Sbjct: 2 IKAVIFDFGGVLLPSPGVMRRWETERGLPGLKDFIVTVNITGPDFNPWARTFERGELTAE 61
Query: 127 NFLGGVASVKGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAV 186
F G G++ F +Y + P + I ++KG K A
Sbjct: 62 AFDGLFRHEYGLRLGHDVRIAPVFPLLYGENTKL------RPSMMAAIKTLRAKGFKTAC 115
Query: 187 ASSADRIKVDANLAAAGLPV-SMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVI 245
++ A A + ++FDA+V + KP P I+ + L V EC+ +
Sbjct: 116 ITNNFPTDHSAEEALLPGDIMALFDAVVESCLEGLRKPDPRIYQLMLERLGVAPEECVFL 175
Query: 246 EDALAGVQAAKAAQMRCIAV 265
+D + ++ A A + I V
Sbjct: 176 DDLGSNLKPAAALGITTIKV 195
|
This model represents a small clade of sequences including C. elegans and mammalian sequences as well as a small number of bacteria. In eukaryotes, this domain exists as an N-terminal fusion to the soluble epoxide hydrolase enzyme and has recently been shown to be an active phosphatase, although the nature of the biological substrate is unclear. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA. Length = 211 |
| >gnl|CDD|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 4e-05
Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 20/107 (18%)
Query: 452 KGKVVVLDFWTYCCINC--MH--VLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIR 507
GK V++ F C C +H +L D + E + V V +K + D E +
Sbjct: 4 NGKPVLVVFTDPDCPYCKKLHKELLKDPDVQEYLKDNFVVIYVNVDDSKEVTDFDGETLS 63
Query: 508 NAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAG 554
L R+ GV PT + +GK +A+L G
Sbjct: 64 EKELA----------------RKYGVRGTPTIVFLDGDGKEVARLPG 94
|
Length = 105 |
| >gnl|CDD|233675 TIGR01993, Pyr-5-nucltdase, pyrimidine 5'-nucleotidase | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 4e-05
Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 183 KVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFE---NLKPAPDIFLSASKILNVPT 239
+ + ++ DR L G+ FD I D KP+P + A + V
Sbjct: 99 RKIIFTNGDRAHARRALRRLGI-EDCFDGIFCFDTANPDLLPKPSPQAYEKALREAGVDP 157
Query: 240 SECIVIEDALAGVQAAKAAQMRCIAV 265
I +D+ + A KA M+ + V
Sbjct: 158 ERAIFFDDSARNIAAGKALGMKTVLV 183
|
This family of proteins includes the SDT1/SSM1 gene from yeast which has been shown to code for a pyrimidine (UMP/CMP) 5'nucleotidase. The family spans plants, fungi and a small number of bacteria. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509). Length = 183 |
| >gnl|CDD|233462 TIGR01548, HAD-SF-IA-hyp1, haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548 | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 7e-05
Identities = 44/198 (22%), Positives = 70/198 (35%), Gaps = 22/198 (11%)
Query: 81 AVLFDMDGVLCNSEEPSRRAAVDVFAEM-GVEVTVEDFLPFMGTGEAN------------ 127
A++ DMDGV+ + + RRA +D GV VT D G AN
Sbjct: 2 ALVLDMDGVMADVSQSYRRAIIDTVEHFGGVSVTHADIDHTKLAGNANNDWQLTHRLVVD 61
Query: 128 FLGGVASVKGVKGFDSEAAKKRFFEIYLDK-YAKPNSGIGFPG------ALELINQCKSK 180
L +S + EA +F +Y Y + + +G L+ +
Sbjct: 62 GLNSASSERVRDAPTLEAVTAQFQALYQGVGYYRDLATLGLIEDETLLTPKGLLRELHRA 121
Query: 181 GLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTS 240
+AV + R L GL + I D KP P+ + A+K L V
Sbjct: 122 PKGMAVVTGRPRKDAAKFLTTHGLEILFPVQIWMEDCPP--KPNPEPLILAAKALGVEAC 179
Query: 241 ECIVIEDALAGVQAAKAA 258
++ D + + + A
Sbjct: 180 HAAMVGDTVDDIITGRKA 197
|
This model represents a small and phylogenetically curious clade of sequences. Sequences are found from Halobacterium (an archaeon), Nostoc and Synechococcus (cyanobacteria) and Phytophthora (a stramenophile eukaryote). These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs. The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's. Length = 197 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 1e-04
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 594 RLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNF 634
L +S L P LA+D + RL+ +D + I V +LDG
Sbjct: 2 TLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN 42
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
| >gnl|CDD|184456 PRK14018, PRK14018, trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 3e-04
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRN--A 509
K K ++ FW C C+ L + E + K ++ V S F +EK + A
Sbjct: 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYA 114
Query: 510 VLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKL 548
L Y PV+ D L + L ++ +P++A++G +G +
Sbjct: 115 GLDYP-KLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDV 152
|
Length = 521 |
| >gnl|CDD|239308 cd03010, TlpA_like_DsbE, TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 4e-04
Identities = 34/131 (25%), Positives = 49/131 (37%), Gaps = 20/131 (15%)
Query: 430 VPEFPAKLDWLNTAPLQFRR-DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFT 488
P F L L DLKGK +L+ W C C P L +
Sbjct: 3 APAF--SLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHP---VLMALARQGRVP 57
Query: 489 VVGVHSAKFDNEKD-LEAIRNAVLRYGISHP---VVNDGDMNLWRELGVNSWP-TFAVVG 543
+ G+ N KD E + R+G +P V D D + +LGV P TF ++
Sbjct: 58 IYGI------NYKDNPENALAWLARHG--NPYAAVGFDPDGRVGIDLGVYGVPETF-LID 108
Query: 544 PNGKLLAQLAG 554
+G + + G
Sbjct: 109 GDGIIRYKHVG 119
|
Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c. Length = 127 |
| >gnl|CDD|233519 TIGR01668, YqeG_hyp_ppase, HAD superfamily (subfamily IIIA) phosphatase, TIGR01668 | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 32/153 (20%), Positives = 56/153 (36%), Gaps = 16/153 (10%)
Query: 133 ASVKGVKGFDSEAAKKRFFE-IYLDK---YAKPNSGIGFPGALELINQCKSKGLKVAVAS 188
A VK + + KK + + LDK P+ +P + I + K+ G K+ + S
Sbjct: 7 AIVKTLNDLTIDLLKKVGIKGVVLDKDNTLVYPDHNEAYPALRDWIEELKAAGRKLLIVS 66
Query: 189 -SADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIED 247
+A + A A G+PV + A +KP F A + + + + V+ D
Sbjct: 67 NNAGEQRAKAVEKALGIPV-----LPHA-----VKPPGCAFRRAHPEMGLTSEQVAVVGD 116
Query: 248 ALA-GVQAAKAAQMRCIAVTTTLSEERLKEASP 279
L V I V + ++
Sbjct: 117 RLFTDVMGGNRNGSYTILVEPLVHPDQWFIKRI 149
|
This family of hypothetical proteins is a member of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterized members of this subfamily (TIGR01662) and most characterized members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs, all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family. Length = 170 |
| >gnl|CDD|223634 COG0560, SerB, Phosphoserine phosphatase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 6e-04
Identities = 34/136 (25%), Positives = 51/136 (37%), Gaps = 35/136 (25%)
Query: 80 SAVLFDMDGVLCNSE--EPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGG----VA 133
+FD+DG L N+E + R A GV V GE +F VA
Sbjct: 6 KLAVFDLDGTLINAELIDELARGA-------GVGEEVLAITERAMRGELDFEESLRLRVA 58
Query: 134 SVKGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASS---- 189
+KG E +++ + PGA EL+ K+ G KV + S
Sbjct: 59 LLKG--------LPVEVLEEVREEFLRL-----TPGAEELVAALKAAGAKVVIISGGFTF 105
Query: 190 -----ADRIKVDANLA 200
A+R+ +D +A
Sbjct: 106 LVEPIAERLGIDYVVA 121
|
Length = 212 |
| >gnl|CDD|110440 pfam01436, NHL, NHL repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 0.001
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 656 FNRPQGLAYNAKKNLLYVADTENHALR 682
FNRP G+A + +YVAD+ENH ++
Sbjct: 1 FNRPHGVAVD-SDGDVYVADSENHRVQ 26
|
The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies. It is about 40 residues long and resembles the WD repeat pfam00400. The repeats have a catalytic activity in bovine PAM (peptidyl-glycine alpha-amidating monooxygenase), proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localised to the repeats. Human E3 ubiquitin-protein ligase TRIM32 interacts with the activation domain of Tat. This interaction is me diated by the NHL repeats. Length = 28 |
| >gnl|CDD|225090 COG2179, COG2179, Predicted hydrolase of the HAD superfamily [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 11/99 (11%)
Query: 168 PGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDI 227
P + + K G+KV V S+ +V G+P I A KP
Sbjct: 49 PELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVP-----FIYRA-----KKPFGRA 98
Query: 228 FLSASKILNVPTSECIVIEDAL-AGVQAAKAAQMRCIAV 265
F A K +N+P E +++ D L V A MR I V
Sbjct: 99 FRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGMRTILV 137
|
Length = 175 |
| >gnl|CDD|236354 PRK08942, PRK08942, D,D-heptose 1,7-bisphosphate phosphatase; Validated | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.002
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 23/120 (19%)
Query: 168 PGALELINQCKSKGLKVAVASSADRI---------------KVDANLAAAGLPVSMFDAI 212
PG++E I + K G +V VA++ I K+D +LA G + D I
Sbjct: 32 PGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRGGRL---DGI 88
Query: 213 V-----SADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTT 267
D + KP P + LS ++ LN+ + ++ D+L +QAA AA + + V T
Sbjct: 89 YYCPHHPEDGCDCRKPKPGMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVTPVLVRT 148
|
Length = 181 |
| >gnl|CDD|223720 COG0647, NagD, Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.002
Identities = 51/263 (19%), Positives = 78/263 (29%), Gaps = 67/263 (25%)
Query: 80 SAVLFDMDGVLCNSEE--PSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKG 137
LFD+DGVL E P A+ G V FL T + V + +
Sbjct: 9 DGFLFDLDGVLYRGNEAIPGAAEALKRLKAAGKPVI---FL----TNNSTRSREVVAARL 61
Query: 138 VKGFDSEAAKKRFFE------IYLDKYAKPNS--GIGFPGALELINQCKSKGLKVAVASS 189
+ YL K IG G E + +G +
Sbjct: 62 SSLGGVDVTPDDIVTSGDATADYLAKQKPGKKVYVIGEEGLKEEL-----EGAGFELVDE 116
Query: 190 ADRIKVD------------------ANLAAAGLPV--------------SMFDAIVSADA 217
+ +VD AAG P A A
Sbjct: 117 EEPARVDAVVVGLDRTLTYEKLAEALLAIAAGAPFIATNPDLTVPTERGLRPGAGAIAAL 176
Query: 218 FENL---------KPAPDIFLSASKILNVPTSECIVIEDALAG-VQAAKAAQMRCIAVTT 267
E KP+P I+ +A + L + SE +++ D L + AKAA + + V T
Sbjct: 177 LEQATGREPTVIGKPSPAIYEAALEKLGLDRSEVLMVGDRLDTDILGAKAAGLDTLLVLT 236
Query: 268 ---TLSEERLKEASPSLIRKEIG 287
+ + E P+ + +
Sbjct: 237 GVSSAEDLDRAEVKPTYVVDSLA 259
|
Length = 269 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1089 | |||
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 100.0 | |
| PLN02770 | 248 | haloacid dehalogenase-like hydrolase family protei | 99.95 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.94 | |
| PRK13288 | 214 | pyrophosphatase PpaX; Provisional | 99.94 | |
| TIGR03351 | 220 | PhnX-like phosphonatase-like hydrolase. This clade | 99.94 | |
| COG0546 | 220 | Gph Predicted phosphatases [General function predi | 99.94 | |
| TIGR01422 | 253 | phosphonatase phosphonoacetaldehyde hydrolase. Thi | 99.94 | |
| PLN02575 | 381 | haloacid dehalogenase-like hydrolase | 99.94 | |
| PRK10826 | 222 | 2-deoxyglucose-6-phosphatase; Provisional | 99.94 | |
| PRK13226 | 229 | phosphoglycolate phosphatase; Provisional | 99.94 | |
| PLN03243 | 260 | haloacid dehalogenase-like hydrolase; Provisional | 99.93 | |
| PRK13478 | 267 | phosphonoacetaldehyde hydrolase; Provisional | 99.93 | |
| TIGR01449 | 213 | PGP_bact 2-phosphoglycolate phosphatase, prokaryot | 99.93 | |
| COG0637 | 221 | Predicted phosphatase/phosphohexomutase [General f | 99.92 | |
| PRK13223 | 272 | phosphoglycolate phosphatase; Provisional | 99.92 | |
| PRK11587 | 218 | putative phosphatase; Provisional | 99.92 | |
| PRK13225 | 273 | phosphoglycolate phosphatase; Provisional | 99.92 | |
| PLN02940 | 382 | riboflavin kinase | 99.92 | |
| TIGR01454 | 205 | AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthes | 99.92 | |
| PRK13222 | 226 | phosphoglycolate phosphatase; Provisional | 99.91 | |
| PRK10725 | 188 | fructose-1-P/6-phosphogluconate phosphatase; Provi | 99.91 | |
| TIGR02253 | 221 | CTE7 HAD superfamily (subfamily IA) hydrolase, TIG | 99.9 | |
| TIGR01990 | 185 | bPGM beta-phosphoglucomutase. The enzyme from L. l | 99.9 | |
| PRK10563 | 221 | 6-phosphogluconate phosphatase; Provisional | 99.9 | |
| PLN02779 | 286 | haloacid dehalogenase-like hydrolase family protei | 99.9 | |
| TIGR02009 | 185 | PGMB-YQAB-SF beta-phosphoglucomutase family hydrol | 99.9 | |
| cd03012 | 126 | TlpA_like_DipZ_like TlpA-like family, DipZ-like su | 99.89 | |
| PRK09449 | 224 | dUMP phosphatase; Provisional | 99.88 | |
| TIGR02254 | 224 | YjjG/YfnB HAD superfamily (subfamily IA) hydrolase | 99.88 | |
| TIGR02252 | 203 | DREG-2 REG-2-like, HAD superfamily (subfamily IA) | 99.88 | |
| PRK06698 | 459 | bifunctional 5'-methylthioadenosine/S-adenosylhomo | 99.87 | |
| PLN02811 | 220 | hydrolase | 99.87 | |
| PRK15412 | 185 | thiol:disulfide interchange protein DsbE; Provisio | 99.86 | |
| PLN02399 | 236 | phospholipid hydroperoxide glutathione peroxidase | 99.86 | |
| TIGR01428 | 198 | HAD_type_II 2-haloalkanoic acid dehalogenase, type | 99.86 | |
| PRK14988 | 224 | GMP/IMP nucleotidase; Provisional | 99.86 | |
| PF08534 | 146 | Redoxin: Redoxin; InterPro: IPR013740 This redoxin | 99.86 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 99.86 | |
| PRK10748 | 238 | flavin mononucleotide phosphatase; Provisional | 99.85 | |
| PLN02412 | 167 | probable glutathione peroxidase | 99.85 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.85 | |
| PTZ00056 | 199 | glutathione peroxidase; Provisional | 99.85 | |
| PF13419 | 176 | HAD_2: Haloacid dehalogenase-like hydrolase; PDB: | 99.84 | |
| KOG2914 | 222 | consensus Predicted haloacid-halidohydrolase and r | 99.84 | |
| cd00340 | 152 | GSH_Peroxidase Glutathione (GSH) peroxidase family | 99.83 | |
| TIGR01548 | 197 | HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, | 99.83 | |
| PRK14018 | 521 | trifunctional thioredoxin/methionine sulfoxide red | 99.83 | |
| TIGR00385 | 173 | dsbE periplasmic protein thiol:disulfide oxidoredu | 99.82 | |
| TIGR02247 | 211 | HAD-1A3-hyp Epoxide hydrolase N-terminal domain-li | 99.82 | |
| COG1011 | 229 | Predicted hydrolase (HAD superfamily) [General fun | 99.81 | |
| TIGR02540 | 153 | gpx7 putative glutathione peroxidase Gpx7. This mo | 99.81 | |
| cd03010 | 127 | TlpA_like_DsbE TlpA-like family, DsbE (also known | 99.81 | |
| PTZ00256 | 183 | glutathione peroxidase; Provisional | 99.8 | |
| PRK03147 | 173 | thiol-disulfide oxidoreductase; Provisional | 99.8 | |
| PRK09437 | 154 | bcp thioredoxin-dependent thiol peroxidase; Review | 99.8 | |
| PF00578 | 124 | AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per | 99.8 | |
| TIGR01509 | 183 | HAD-SF-IA-v3 haloacid dehalogenase superfamily, su | 99.8 | |
| TIGR01993 | 184 | Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These | 99.8 | |
| cd03008 | 146 | TryX_like_RdCVF Tryparedoxin (TryX)-like family, R | 99.8 | |
| PRK09456 | 199 | ?-D-glucose-1-phosphatase; Provisional | 99.79 | |
| COG1225 | 157 | Bcp Peroxiredoxin [Posttranslational modification, | 99.79 | |
| cd03017 | 140 | PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit | 99.79 | |
| KOG3085 | 237 | consensus Predicted hydrolase (HAD superfamily) [G | 99.79 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 99.79 | |
| cd02969 | 171 | PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot | 99.79 | |
| PRK00522 | 167 | tpx lipid hydroperoxide peroxidase; Provisional | 99.78 | |
| TIGR01549 | 154 | HAD-SF-IA-v1 haloacid dehalogenase superfamily, su | 99.78 | |
| PHA02597 | 197 | 30.2 hypothetical protein; Provisional | 99.78 | |
| cd03015 | 173 | PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2- | 99.77 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.76 | |
| cd03014 | 143 | PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical | 99.76 | |
| TIGR01626 | 184 | ytfJ_HI0045 conserved hypothetical protein YtfJ-fa | 99.76 | |
| cd03018 | 149 | PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik | 99.76 | |
| TIGR03137 | 187 | AhpC peroxiredoxin. This gene contains two invaria | 99.75 | |
| PLN02954 | 224 | phosphoserine phosphatase | 99.75 | |
| TIGR00213 | 176 | GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase | 99.75 | |
| PRK08942 | 181 | D,D-heptose 1,7-bisphosphate phosphatase; Validate | 99.74 | |
| PRK10382 | 187 | alkyl hydroperoxide reductase subunit C; Provision | 99.74 | |
| PRK13190 | 202 | putative peroxiredoxin; Provisional | 99.74 | |
| cd02967 | 114 | mauD Methylamine utilization (mau) D family; mauD | 99.74 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 99.74 | |
| TIGR00338 | 219 | serB phosphoserine phosphatase SerB. Phosphoserine | 99.73 | |
| TIGR02661 | 189 | MauD methylamine dehydrogenase accessory protein M | 99.73 | |
| PRK13599 | 215 | putative peroxiredoxin; Provisional | 99.73 | |
| TIGR01493 | 175 | HAD-SF-IA-v2 Haloacid dehalogenase superfamily, su | 99.72 | |
| cd03011 | 123 | TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso | 99.72 | |
| PTZ00137 | 261 | 2-Cys peroxiredoxin; Provisional | 99.71 | |
| PRK15000 | 200 | peroxidase; Provisional | 99.71 | |
| PRK13191 | 215 | putative peroxiredoxin; Provisional | 99.71 | |
| PRK06769 | 173 | hypothetical protein; Validated | 99.71 | |
| TIGR01691 | 220 | enolase-ppase 2,3-diketo-5-methylthio-1-phosphopen | 99.7 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.7 | |
| cd03016 | 203 | PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub | 99.7 | |
| cd02970 | 149 | PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot | 99.69 | |
| cd02971 | 140 | PRX_family Peroxiredoxin (PRX) family; composed of | 99.69 | |
| cd02964 | 132 | TryX_like_family Tryparedoxin (TryX)-like family; | 99.69 | |
| PRK11133 | 322 | serB phosphoserine phosphatase; Provisional | 99.69 | |
| cd02968 | 142 | SCO SCO (an acronym for Synthesis of Cytochrome c | 99.69 | |
| cd03009 | 131 | TryX_like_TryX_NRX Tryparedoxin (TryX)-like family | 99.68 | |
| PRK13189 | 222 | peroxiredoxin; Provisional | 99.67 | |
| PRK13728 | 181 | conjugal transfer protein TrbB; Provisional | 99.67 | |
| TIGR01685 | 174 | MDP-1 magnesium-dependent phosphatase-1. This mode | 99.67 | |
| PRK10606 | 183 | btuE putative glutathione peroxidase; Provisional | 99.67 | |
| TIGR01491 | 201 | HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPa | 99.66 | |
| TIGR01656 | 147 | Histidinol-ppas histidinol-phosphate phosphatase f | 99.66 | |
| cd02966 | 116 | TlpA_like_family TlpA-like family; composed of Tlp | 99.66 | |
| PTZ00253 | 199 | tryparedoxin peroxidase; Provisional | 99.66 | |
| TIGR01672 | 237 | AphA HAD superfamily (subfamily IIIB) phosphatase, | 99.65 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 99.65 | |
| TIGR01662 | 132 | HAD-SF-IIIA HAD-superfamily hydrolase, subfamily I | 99.65 | |
| PF13905 | 95 | Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_ | 99.64 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 99.64 | |
| TIGR01452 | 279 | PGP_euk phosphoglycolate/pyridoxal phosphate phosp | 99.62 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.62 | |
| TIGR01261 | 161 | hisB_Nterm histidinol-phosphatase. This model desc | 99.61 | |
| PRK09552 | 219 | mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosp | 99.6 | |
| TIGR01664 | 166 | DNA-3'-Pase DNA 3'-phosphatase. The central phosph | 99.59 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.58 | |
| TIGR01458 | 257 | HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydr | 99.58 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.57 | |
| PRK13582 | 205 | thrH phosphoserine phosphatase; Provisional | 99.55 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.55 | |
| TIGR02738 | 153 | TrbB type-F conjugative transfer system pilin asse | 99.55 | |
| PRK10444 | 248 | UMP phosphatase; Provisional | 99.54 | |
| cd02950 | 142 | TxlA TRX-like protein A (TxlA) family; TxlA was or | 99.53 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 99.52 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 99.51 | |
| cd03013 | 155 | PRX5_like Peroxiredoxin (PRX) family, PRX5-like su | 99.51 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 99.51 | |
| TIGR01668 | 170 | YqeG_hyp_ppase HAD superfamily (subfamily IIIA) ph | 99.5 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.5 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.5 | |
| PLN02645 | 311 | phosphoglycolate phosphatase | 99.5 | |
| TIGR01489 | 188 | DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopent | 99.49 | |
| COG2179 | 175 | Predicted hydrolase of the HAD superfamily [Genera | 99.49 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.49 | |
| cd01427 | 139 | HAD_like Haloacid dehalogenase-like hydrolases. Th | 99.49 | |
| KOG3109 | 244 | consensus Haloacid dehalogenase-like hydrolase [Ge | 99.48 | |
| KOG1615 | 227 | consensus Phosphoserine phosphatase [Amino acid tr | 99.47 | |
| COG0450 | 194 | AhpC Peroxiredoxin [Posttranslational modification | 99.47 | |
| KOG0910 | 150 | consensus Thioredoxin-like protein [Posttranslatio | 99.47 | |
| TIGR01457 | 249 | HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydr | 99.45 | |
| COG0647 | 269 | NagD Predicted sugar phosphatases of the HAD super | 99.45 | |
| PRK05446 | 354 | imidazole glycerol-phosphate dehydratase/histidino | 99.44 | |
| TIGR03333 | 214 | salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl | 99.43 | |
| COG0560 | 212 | SerB Phosphoserine phosphatase [Amino acid transpo | 99.43 | |
| KOG1214 | 1289 | consensus Nidogen and related basement membrane pr | 99.43 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.43 | |
| TIGR02137 | 203 | HSK-PSP phosphoserine phosphatase/homoserine phosp | 99.42 | |
| PRK11009 | 237 | aphA acid phosphatase/phosphotransferase; Provisio | 99.42 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 99.41 | |
| cd02999 | 100 | PDI_a_ERp44_like PDIa family, endoplasmic reticulu | 99.41 | |
| KOG2882 | 306 | consensus p-Nitrophenyl phosphatase [Inorganic ion | 99.41 | |
| cd02985 | 103 | TRX_CDSP32 TRX family, chloroplastic drought-induc | 99.4 | |
| cd02954 | 114 | DIM1 Dim1 family; Dim1 is also referred to as U5 s | 99.38 | |
| cd02963 | 111 | TRX_DnaJ TRX domain, DnaJ domain containing protei | 99.37 | |
| TIGR01681 | 128 | HAD-SF-IIIC HAD-superfamily phosphatase, subfamily | 99.37 | |
| cd02956 | 96 | ybbN ybbN protein family; ybbN is a hypothetical p | 99.36 | |
| cd02948 | 102 | TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus | 99.35 | |
| TIGR01670 | 154 | YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-pho | 99.35 | |
| TIGR02726 | 169 | phenyl_P_delta phenylphosphate carboxylase, delta | 99.34 | |
| TIGR01488 | 177 | HAD-SF-IB Haloacid Dehalogenase superfamily, subfa | 99.34 | |
| PHA02530 | 300 | pseT polynucleotide kinase; Provisional | 99.34 | |
| KOG1214 | 1289 | consensus Nidogen and related basement membrane pr | 99.33 | |
| PHA02278 | 103 | thioredoxin-like protein | 99.32 | |
| PF00702 | 215 | Hydrolase: haloacid dehalogenase-like hydrolase; I | 99.31 | |
| cd02951 | 125 | SoxW SoxW family; SoxW is a bacterial periplasmic | 99.3 | |
| PRK09381 | 109 | trxA thioredoxin; Provisional | 99.29 | |
| TIGR01490 | 202 | HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrol | 99.28 | |
| PLN00410 | 142 | U5 snRNP protein, DIM1 family; Provisional | 99.28 | |
| PRK09484 | 183 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphata | 99.27 | |
| COG0241 | 181 | HisB Histidinol phosphatase and related phosphatas | 99.27 | |
| TIGR02740 | 271 | TraF-like TraF-like protein. This protein is relat | 99.26 | |
| cd03006 | 113 | PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil | 99.25 | |
| TIGR01459 | 242 | HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolas | 99.25 | |
| PF13242 | 75 | Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OY | 99.24 | |
| PRK10996 | 139 | thioredoxin 2; Provisional | 99.24 | |
| cd02953 | 104 | DsbDgamma DsbD gamma family; DsbD gamma is the C-t | 99.24 | |
| cd02994 | 101 | PDI_a_TMX PDIa family, TMX subfamily; composed of | 99.23 | |
| cd03003 | 101 | PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam | 99.23 | |
| TIGR01456 | 321 | CECR5 HAD-superfamily class IIA hydrolase, TIGR014 | 99.23 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 99.22 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 99.22 | |
| KOG0907 | 106 | consensus Thioredoxin [Posttranslational modificat | 99.2 | |
| cd03000 | 104 | PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o | 99.2 | |
| cd03004 | 104 | PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam | 99.19 | |
| KOG1520 | 376 | consensus Predicted alkaloid synthase/Surface muci | 99.19 | |
| COG0386 | 162 | BtuE Glutathione peroxidase [Posttranslational mod | 99.19 | |
| KOG2501 | 157 | consensus Thioredoxin, nucleoredoxin and related p | 99.18 | |
| cd03005 | 102 | PDI_a_ERp46 PDIa family, endoplasmic reticulum pro | 99.18 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 99.18 | |
| PF13098 | 112 | Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_ | 99.17 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 99.16 | |
| TIGR01460 | 236 | HAD-SF-IIA Haloacid Dehalogenase Superfamily Class | 99.15 | |
| TIGR01126 | 102 | pdi_dom protein disulfide-isomerase domain. This m | 99.15 | |
| cd02986 | 114 | DLP Dim1 family, Dim1-like protein (DLP) subfamily | 99.15 | |
| cd02993 | 109 | PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat | 99.15 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.14 | |
| KOG0855 | 211 | consensus Alkyl hydroperoxide reductase, thiol spe | 99.14 | |
| cd03002 | 109 | PDI_a_MPD1_like PDI family, MPD1-like subfamily; c | 99.13 | |
| cd02949 | 97 | TRX_NTR TRX domain, novel NADPH thioredoxin reduct | 99.13 | |
| cd03065 | 120 | PDI_b_Calsequestrin_N PDIb family, Calsequestrin s | 99.13 | |
| smart00577 | 148 | CPDc catalytic domain of ctd-like phosphatases. | 99.13 | |
| TIGR01686 | 320 | FkbH FkbH-like domain. The C-terminal portion of t | 99.12 | |
| TIGR01663 | 526 | PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase | 99.11 | |
| cd02996 | 108 | PDI_a_ERp44 PDIa family, endoplasmic reticulum pro | 99.11 | |
| cd02965 | 111 | HyaE HyaE family; HyaE is also called HupG and Hox | 99.1 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.1 | |
| PF00085 | 103 | Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio | 99.1 | |
| PRK11590 | 211 | hypothetical protein; Provisional | 99.09 | |
| cd02997 | 104 | PDI_a_PDIR PDIa family, PDIR subfamily; composed o | 99.08 | |
| TIGR01068 | 101 | thioredoxin thioredoxin. Several proteins, such as | 99.08 | |
| PTZ00443 | 224 | Thioredoxin domain-containing protein; Provisional | 99.08 | |
| cd02962 | 152 | TMX2 TMX2 family; composed of proteins similar to | 99.06 | |
| PF02630 | 174 | SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam | 99.06 | |
| PF06888 | 234 | Put_Phosphatase: Putative Phosphatase; InterPro: I | 99.05 | |
| TIGR02244 | 343 | HAD-IG-Ncltidse HAD superfamily (subfamily IG) hyd | 99.04 | |
| cd02984 | 97 | TRX_PICOT TRX domain, PICOT (for PKC-interacting c | 99.03 | |
| cd02998 | 105 | PDI_a_ERp38 PDIa family, endoplasmic reticulum pro | 99.03 | |
| PRK08238 | 479 | hypothetical protein; Validated | 99.0 | |
| PF09419 | 168 | PGP_phosphatase: Mitochondrial PGP phosphatase; In | 99.0 | |
| TIGR01544 | 277 | HAD-SF-IE haloacid dehalogenase superfamily, subfa | 98.99 | |
| PTZ00051 | 98 | thioredoxin; Provisional | 98.98 | |
| KOG3040 | 262 | consensus Predicted sugar phosphatase (HAD superfa | 98.97 | |
| cd02959 | 117 | ERp19 Endoplasmic reticulum protein 19 (ERp19) fam | 98.97 | |
| cd03001 | 103 | PDI_a_P5 PDIa family, P5 subfamily; composed of eu | 98.97 | |
| KOG0852 | 196 | consensus Alkyl hydroperoxide reductase, thiol spe | 98.97 | |
| cd02961 | 101 | PDI_a_family Protein Disulfide Isomerase (PDIa) fa | 98.96 | |
| COG1999 | 207 | Uncharacterized protein SCO1/SenC/PrrC, involved i | 98.96 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.96 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.96 | |
| TIGR01295 | 122 | PedC_BrcD bacteriocin transport accessory protein, | 98.93 | |
| COG4229 | 229 | Predicted enolase-phosphatase [Energy production a | 98.93 | |
| cd02957 | 113 | Phd_like Phosducin (Phd)-like family; composed of | 98.92 | |
| PRK10530 | 272 | pyridoxal phosphate (PLP) phosphatase; Provisional | 98.91 | |
| cd02975 | 113 | PfPDO_like_N Pyrococcus furiosus protein disulfide | 98.9 | |
| PF12689 | 169 | Acid_PPase: Acid Phosphatase; InterPro: IPR010036 | 98.9 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 98.9 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 98.9 | |
| PTZ00445 | 219 | p36-lilke protein; Provisional | 98.9 | |
| KOG1651 | 171 | consensus Glutathione peroxidase [Posttranslationa | 98.89 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 98.88 | |
| cd02989 | 113 | Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior | 98.87 | |
| cd02995 | 104 | PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain | 98.84 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 98.83 | |
| KOG2792 | 280 | consensus Putative cytochrome C oxidase assembly p | 98.83 | |
| PRK01158 | 230 | phosphoglycolate phosphatase; Provisional | 98.82 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 98.8 | |
| cd02987 | 175 | Phd_like_Phd Phosducin (Phd)-like family, Phd subf | 98.8 | |
| cd02947 | 93 | TRX_family TRX family; composed of two groups: Gro | 98.79 | |
| TIGR00411 | 82 | redox_disulf_1 small redox-active disulfide protei | 98.76 | |
| cd02952 | 119 | TRP14_like Human TRX-related protein 14 (TRP14)-li | 98.76 | |
| PRK00293 | 571 | dipZ thiol:disulfide interchange protein precursor | 98.75 | |
| KOG0908 | 288 | consensus Thioredoxin-like protein [Posttranslatio | 98.75 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 98.75 | |
| PTZ00102 | 477 | disulphide isomerase; Provisional | 98.74 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.74 | |
| PF08645 | 159 | PNK3P: Polynucleotide kinase 3 phosphatase; InterP | 98.73 | |
| cd02955 | 124 | SSP411 TRX domain, SSP411 protein family; members | 98.71 | |
| KOG1520 | 376 | consensus Predicted alkaloid synthase/Surface muci | 98.71 | |
| cd02992 | 114 | PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas | 98.7 | |
| TIGR00424 | 463 | APS_reduc 5'-adenylylsulfate reductase, thioredoxi | 98.69 | |
| TIGR01533 | 266 | lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) famil | 98.69 | |
| TIGR01487 | 215 | SPP-like sucrose-phosphate phosphatase-like hydrol | 98.69 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.68 | |
| TIGR01482 | 225 | SPP-subfamily Sucrose-phosphate phosphatase subfam | 98.68 | |
| PLN02309 | 457 | 5'-adenylylsulfate reductase | 98.66 | |
| PF12710 | 192 | HAD: haloacid dehalogenase-like hydrolase; PDB: 3P | 98.65 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.64 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 98.61 | |
| cd02988 | 192 | Phd_like_VIAF Phosducin (Phd)-like family, Viral i | 98.61 | |
| KOG3120 | 256 | consensus Predicted haloacid dehalogenase-like hyd | 98.61 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 98.61 | |
| TIGR00412 | 76 | redox_disulf_2 small redox-active disulfide protei | 98.6 | |
| COG2133 | 399 | Glucose/sorbosone dehydrogenases [Carbohydrate tra | 98.6 | |
| COG1778 | 170 | Low specificity phosphatase (HAD superfamily) [Gen | 98.58 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.58 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.57 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.57 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 98.57 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.56 | |
| TIGR02187 | 215 | GlrX_arch Glutaredoxin-like domain protein. This f | 98.56 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.56 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 98.55 | |
| TIGR01130 | 462 | ER_PDI_fam protein disulfide isomerases, eukaryoti | 98.55 | |
| PRK15126 | 272 | thiamin pyrimidine pyrophosphate hydrolase; Provis | 98.54 | |
| TIGR01545 | 210 | YfhB_g-proteo haloacid dehalogenase superfamily, s | 98.54 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.54 | |
| cd02982 | 103 | PDI_b'_family Protein Disulfide Isomerase (PDIb') | 98.52 | |
| PRK10513 | 270 | sugar phosphate phosphatase; Provisional | 98.52 | |
| PTZ00062 | 204 | glutaredoxin; Provisional | 98.52 | |
| TIGR01684 | 301 | viral_ppase viral phosphatase. These proteins also | 98.52 | |
| KOG0854 | 224 | consensus Alkyl hydroperoxide reductase, thiol spe | 98.5 | |
| PTZ00102 | 477 | disulphide isomerase; Provisional | 98.46 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.46 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 98.46 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 98.44 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.43 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 98.42 | |
| TIGR01525 | 556 | ATPase-IB_hvy heavy metal translocating P-type ATP | 98.39 | |
| PRK10976 | 266 | putative hydrolase; Provisional | 98.39 | |
| cd02958 | 114 | UAS UAS family; UAS is a domain of unknown functio | 98.39 | |
| TIGR01512 | 536 | ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translo | 98.38 | |
| PHA02125 | 75 | thioredoxin-like protein | 98.37 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 98.36 | |
| TIGR02251 | 162 | HIF-SF_euk Dullard-like phosphatase domain. This d | 98.34 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 98.32 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.32 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 98.3 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.29 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 98.29 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.29 | |
| cd03026 | 89 | AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid | 98.28 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.28 | |
| KOG0190 | 493 | consensus Protein disulfide isomerase (prolyl 4-hy | 98.26 | |
| PF00255 | 108 | GSHPx: Glutathione peroxidase; InterPro: IPR000889 | 98.25 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.24 | |
| cd02973 | 67 | TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)- | 98.23 | |
| COG4359 | 220 | Uncharacterized conserved protein [Function unknow | 98.22 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 98.21 | |
| TIGR02187 | 215 | GlrX_arch Glutaredoxin-like domain protein. This f | 98.2 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 98.19 | |
| PLN02887 | 580 | hydrolase family protein | 98.19 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 98.19 | |
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 98.18 | |
| cd02960 | 130 | AGR Anterior Gradient (AGR) family; members of thi | 98.18 | |
| TIGR00099 | 256 | Cof-subfamily Cof subfamily of IIB subfamily of ha | 98.17 | |
| COG0561 | 264 | Cof Predicted hydrolases of the HAD superfamily [G | 98.17 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.16 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.16 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.15 | |
| TIGR01459 | 242 | HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolas | 98.14 | |
| PHA03398 | 303 | viral phosphatase superfamily protein; Provisional | 98.13 | |
| PRK00192 | 273 | mannosyl-3-phosphoglycerate phosphatase; Reviewed | 98.13 | |
| COG2077 | 158 | Tpx Peroxiredoxin [Posttranslational modification, | 98.13 | |
| COG4087 | 152 | Soluble P-type ATPase [General function prediction | 98.13 | |
| TIGR02471 | 236 | sucr_syn_bact_C sucrose phosphate synthase, sucros | 98.11 | |
| TIGR01511 | 562 | ATPase-IB1_Cu copper-(or silver)-translocating P-t | 98.11 | |
| PF08282 | 254 | Hydrolase_3: haloacid dehalogenase-like hydrolase; | 98.11 | |
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 98.11 | |
| TIGR01130 | 462 | ER_PDI_fam protein disulfide isomerases, eukaryoti | 98.1 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 98.1 | |
| TIGR01522 | 884 | ATPase-IIA2_Ca golgi membrane calcium-translocatin | 98.07 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.06 | |
| TIGR01485 | 249 | SPP_plant-cyano sucrose-6F-phosphate phosphohydrol | 98.05 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 98.04 | |
| PF13344 | 101 | Hydrolase_6: Haloacid dehalogenase-like hydrolase; | 98.04 | |
| PRK10671 | 834 | copA copper exporting ATPase; Provisional | 98.04 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 98.03 | |
| COG2133 | 399 | Glucose/sorbosone dehydrogenases [Carbohydrate tra | 98.03 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 98.01 | |
| TIGR02463 | 221 | MPGP_rel mannosyl-3-phosphoglycerate phosphatase-r | 98.01 | |
| KOG1215 | 877 | consensus Low-density lipoprotein receptors contai | 97.99 | |
| PF13728 | 215 | TraF: F plasmid transfer operon protein | 97.98 | |
| smart00594 | 122 | UAS UAS domain. | 97.97 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 97.96 | |
| PF00837 | 237 | T4_deiodinase: Iodothyronine deiodinase; InterPro: | 97.96 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.93 | |
| TIGR02739 | 256 | TraF type-F conjugative transfer system pilin asse | 97.91 | |
| PTZ00421 | 493 | coronin; Provisional | 97.9 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 97.9 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 97.89 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 97.87 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 97.86 | |
| TIGR01675 | 229 | plant-AP plant acid phosphatase. This model explic | 97.86 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 97.85 | |
| PF05761 | 448 | 5_nucleotid: 5' nucleotidase family; InterPro: IPR | 97.85 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 97.84 | |
| COG4996 | 164 | Predicted phosphatase [General function prediction | 97.84 | |
| COG0526 | 127 | TrxA Thiol-disulfide isomerase and thioredoxins [P | 97.84 | |
| TIGR00685 | 244 | T6PP trehalose-phosphatase. At least 18 distinct s | 97.83 | |
| KOG0912 | 375 | consensus Thiol-disulfide isomerase and thioredoxi | 97.82 | |
| KOG4277 | 468 | consensus Uncharacterized conserved protein, conta | 97.81 | |
| COG4232 | 569 | Thiol:disulfide interchange protein [Posttranslati | 97.79 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.79 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 97.78 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.77 | |
| PRK13703 | 248 | conjugal pilus assembly protein TraF; Provisional | 97.77 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 97.76 | |
| TIGR01484 | 204 | HAD-SF-IIB HAD-superfamily hydrolase, subfamily II | 97.76 | |
| cd03007 | 116 | PDI_a_ERp29_N PDIa family, endoplasmic reticulum p | 97.75 | |
| KOG0190 | 493 | consensus Protein disulfide isomerase (prolyl 4-hy | 97.7 | |
| smart00775 | 157 | LNS2 LNS2 domain. This domain is found in Saccharo | 97.7 | |
| KOG0191 | 383 | consensus Thioredoxin/protein disulfide isomerase | 97.69 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 97.69 | |
| PF14595 | 129 | Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A. | 97.68 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.64 | |
| PRK03669 | 271 | mannosyl-3-phosphoglycerate phosphatase; Reviewed | 97.64 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 97.63 | |
| PTZ00421 | 493 | coronin; Provisional | 97.63 | |
| KOG2630 | 254 | consensus Enolase-phosphatase E-1 [Amino acid tran | 97.63 | |
| PRK11509 | 132 | hydrogenase-1 operon protein HyaE; Provisional | 97.62 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 97.62 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 97.61 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 97.6 | |
| TIGR01680 | 275 | Veg_Stor_Prot vegetative storage protein. The prot | 97.6 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.59 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 97.58 | |
| PRK11033 | 741 | zntA zinc/cadmium/mercury/lead-transporting ATPase | 97.57 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.57 | |
| PF13899 | 82 | Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_ | 97.56 | |
| TIGR02461 | 225 | osmo_MPG_phos mannosyl-3-phosphoglycerate phosphat | 97.56 | |
| PF06941 | 191 | NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosol | 97.56 | |
| COG2217 | 713 | ZntA Cation transport ATPase [Inorganic ion transp | 97.55 | |
| cd01659 | 69 | TRX_superfamily Thioredoxin (TRX) superfamily; a l | 97.55 | |
| PRK10187 | 266 | trehalose-6-phosphate phosphatase; Provisional | 97.53 | |
| PF03767 | 229 | Acid_phosphat_B: HAD superfamily, subfamily IIIB ( | 97.53 | |
| PTZ00420 | 568 | coronin; Provisional | 97.52 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 97.51 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 97.5 | |
| TIGR01486 | 256 | HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosph | 97.47 | |
| KOG1215 | 877 | consensus Low-density lipoprotein receptors contai | 97.44 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.4 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.4 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 97.39 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 97.39 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 97.39 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.39 | |
| cd02991 | 116 | UAS_ETEA UAS family, ETEA subfamily; composed of p | 97.39 | |
| PTZ00420 | 568 | coronin; Provisional | 97.36 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 97.33 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 97.33 | |
| COG3700 | 237 | AphA Acid phosphatase (class B) [General function | 97.28 | |
| TIGR01116 | 917 | ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium | 97.28 | |
| COG2143 | 182 | Thioredoxin-related protein [Posttranslational mod | 97.24 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 97.22 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 97.2 | |
| PF11019 | 252 | DUF2608: Protein of unknown function (DUF2608); In | 97.16 | |
| PF03190 | 163 | Thioredox_DsbH: Protein of unknown function, DUF25 | 97.15 | |
| KOG2961 | 190 | consensus Predicted hydrolase (HAD superfamily) [G | 97.15 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 97.13 | |
| cd03023 | 154 | DsbA_Com1_like DsbA family, Com1-like subfamily; c | 97.09 | |
| COG2503 | 274 | Predicted secreted acid phosphatase [General funct | 97.08 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.08 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 97.07 | |
| PRK10877 | 232 | protein disulfide isomerase II DsbC; Provisional | 97.07 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 97.05 | |
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 97.05 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 97.04 | |
| PF06110 | 119 | DUF953: Eukaryotic protein of unknown function (DU | 97.03 | |
| KOG1731 | 606 | consensus FAD-dependent sulfhydryl oxidase/quiesci | 96.98 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 96.96 | |
| PF13192 | 76 | Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY | 96.94 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 96.94 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 96.94 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 96.91 | |
| TIGR01497 | 675 | kdpB K+-transporting ATPase, B subunit. One sequen | 96.91 | |
| PRK14010 | 673 | potassium-transporting ATPase subunit B; Provision | 96.9 | |
| TIGR02196 | 74 | GlrX_YruB Glutaredoxin-like protein, YruB-family. | 96.9 | |
| PF05787 | 524 | DUF839: Bacterial protein of unknown function (DUF | 96.89 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 96.88 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 96.87 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 96.87 | |
| PRK01122 | 679 | potassium-transporting ATPase subunit B; Provision | 96.85 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 96.84 | |
| PLN02645 | 311 | phosphoglycolate phosphatase | 96.84 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 96.83 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 96.83 | |
| PF05787 | 524 | DUF839: Bacterial protein of unknown function (DUF | 96.81 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 96.79 | |
| KOG0207 | 951 | consensus Cation transport ATPase [Inorganic ion t | 96.79 | |
| PRK11657 | 251 | dsbG disulfide isomerase/thiol-disulfide oxidase; | 96.78 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 96.77 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 96.77 | |
| TIGR01517 | 941 | ATPase-IIB_Ca plasma-membrane calcium-translocatin | 96.74 | |
| PRK14502 | 694 | bifunctional mannosyl-3-phosphoglycerate synthase/ | 96.73 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 96.7 | |
| cd03020 | 197 | DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil | 96.69 | |
| TIGR02250 | 156 | FCP1_euk FCP1-like phosphatase, phosphatase domain | 96.67 | |
| PRK10517 | 902 | magnesium-transporting ATPase MgtA; Provisional | 96.65 | |
| KOG0191 | 383 | consensus Thioredoxin/protein disulfide isomerase | 96.65 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 96.64 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 96.63 | |
| TIGR01523 | 1053 | ATPase-IID_K-Na potassium and/or sodium efflux P-t | 96.6 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 96.59 | |
| TIGR02200 | 77 | GlrX_actino Glutaredoxin-like protein. This family | 96.59 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 96.58 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 96.57 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 96.56 | |
| PLN02382 | 413 | probable sucrose-phosphatase | 96.55 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 96.54 | |
| TIGR01524 | 867 | ATPase-IIIB_Mg magnesium-translocating P-type ATPa | 96.53 | |
| PRK15122 | 903 | magnesium-transporting ATPase; Provisional | 96.5 | |
| TIGR01647 | 755 | ATPase-IIIA_H plasma-membrane proton-efflux P-type | 96.49 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 96.47 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 96.47 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 96.44 | |
| COG0678 | 165 | AHP1 Peroxiredoxin [Posttranslational modification | 96.44 | |
| PF05116 | 247 | S6PP: Sucrose-6F-phosphate phosphohydrolase; Inter | 96.44 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 96.43 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 96.41 | |
| PF09695 | 160 | YtfJ_HI0045: Bacterial protein of unknown function | 96.38 | |
| PRK14501 | 726 | putative bifunctional trehalose-6-phosphate syntha | 96.37 | |
| cd03019 | 178 | DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m | 96.28 | |
| PRK10954 | 207 | periplasmic protein disulfide isomerase I; Provisi | 96.26 | |
| COG0474 | 917 | MgtA Cation transport ATPase [Inorganic ion transp | 96.25 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.25 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 96.21 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 96.2 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 96.18 |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-141 Score=1340.81 Aligned_cols=1052 Identities=78% Similarity=1.205 Sum_probs=931.0
Q ss_pred cccccCCCCCCCccccccccccCCCCCCCCCCCCCcccccccCcccc-ccccc--cccccccccc-ccccccCCCCCCCC
Q 001380 2 IAMKLLSSPPASSLSLQTKLFFFSPNTKQLRPSSVSSALFQCGAKRT-VLGRR--MVVKACVTKV-EETDVNVSSESKWG 77 (1089)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~ 77 (1089)
||++|+++|+++++++ +++.++.++ +..+++++.+.+.+.. .+.++ +..+.+.... .+....... ..++
T Consensus 1 ~~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 73 (1057)
T PLN02919 1 MALKLASPPSLFSWPR---RHCAGDFPP---ALAFASSIRGRRSRSGVWLGKNGGARSKSCAKVEEKSRGAEIAT-EEWG 73 (1057)
T ss_pred CCccccCCcccccCcc---cCccCCCCc---ccccchhhcCchhhccceeccccccccceeeehhhhCCCCccCC-CcCC
Confidence 8999999999988884 444222222 3444445444333322 22222 1112221111 222233333 5678
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDK 157 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (1089)
++++|+|||||||+|+...+.+++.++++++|++++.+++..+++.+...++..+....++.....++..+++.+.+.+.
T Consensus 74 ~ikaVIFDlDGTLiDS~~~~~~a~~~~~~~~G~~it~e~~~~~~G~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 153 (1057)
T PLN02919 74 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFVPFMGTGEANFLGGVASVKGVKGFDPDAAKKRFFEIYLEK 153 (1057)
T ss_pred CCCEEEECCCCCeEeChHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999998888888899998888887776665554445555566666666655
Q ss_pred hcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCC
Q 001380 158 YAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNV 237 (1089)
Q Consensus 158 ~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv 237 (1089)
+.......++||+.++|++|+++|++++|+||.....++..++++++...+||.+++++++...||+|++|.++++++|+
T Consensus 154 ~~~~~~~~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lgv 233 (1057)
T PLN02919 154 YAKPNSGIGFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKILGV 233 (1057)
T ss_pred hhhcccCccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHcCc
Confidence 54332335799999999999999999999999999999999999999436899999999999999999999999999999
Q ss_pred CCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhccCCCCcchhhhhhhhhcccc
Q 001380 238 PTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTGGGGSYNEKIQEHELLHAASQ 317 (1089)
Q Consensus 238 ~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~~~~~~~~~~~~~~~~~~~~~ 317 (1089)
.|++||||||+..|+++|+++||++|+|.++...+++...+|+++++++.++.+.+++....+.+..
T Consensus 234 ~p~e~v~IgDs~~Di~AA~~aGm~~I~v~~~~~~~~L~~~~a~~vi~~l~el~~~~~~~~~~~~~~~------------- 300 (1057)
T PLN02919 234 PTSECVVIEDALAGVQAARAAGMRCIAVTTTLSEEILKDAGPSLIRKDIGNISLSDILTGGSDATPN------------- 300 (1057)
T ss_pred CcccEEEEcCCHHHHHHHHHcCCEEEEECCCCCHHHHhhCCCCEEECChHHCCHHHHHhcCCCCCCC-------------
Confidence 9999999999999999999999999999998888888889999999999999999999888543211
Q ss_pred CchhhccccCCCCcccccCCCCCCCcccCCCcccchhhhhhhhhhhHHHHhhhhccccccccccCHHHHHHhhhcCCCcc
Q 001380 318 NSTALLKEKTDNWSILDTGAADEKGSSTSGLQGSRREILRYGSLGVAFSCLFFAVSNWKAMQYASPKAIWNVLFGVNRPS 397 (1089)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~l~~~~~~~~~~~~~~p~~l~~~~~~~~~p~ 397 (1089)
. .+..|+....+.+. ..+++++||+|+||++||+|++|++++..+|++|+|++|+.+++.|.+...|.
T Consensus 301 -~--------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (1057)
T PLN02919 301 -V--------TGMDWINTILDTGS---ILGFQGSRRDILRYGSLGIALSCLYFAATNWKAMQYASPKALWNALFGVDDPS 368 (1057)
T ss_pred -c--------cchhhhcccccccc---ccCcccchhhhhhhhhhhhhhhhheeeccchhhhhhcCHHHHHHHHhccCchh
Confidence 1 12233343333333 35999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCChHHHHHHHHHHHHhhccCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHH
Q 001380 398 FEQTEGGSSQSERIQQFVNYISDVENRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEF 477 (1089)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~ 477 (1089)
|+..+... .++.+.+++..++....|+++|+|+..+.|++|+++++.++++||+|||+|||+||++|++++|.|++
T Consensus 369 ~~~~~~~~----~~~~~~~~i~~~~~~~~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~ 444 (1057)
T PLN02919 369 FAQNSGEG----CVQQFVSYISDLESKKTATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEF 444 (1057)
T ss_pred hhhccchh----HHHHHHHHHHhhhccccCCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHH
Confidence 98877765 69999999999999999999999999888999999998568999999999999999999999999999
Q ss_pred HHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCc
Q 001380 478 LEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGH 557 (1089)
Q Consensus 478 l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~ 557 (1089)
++++|+++++.||+|++.+++.+++.+++++++++++++||++.|.+.+++++|+|.++|+++|||++|++++++.|+..
T Consensus 445 l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~~V~~iPt~ilid~~G~iv~~~~G~~~ 524 (1057)
T PLN02919 445 LEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRELGVSSWPTFAVVSPNGKLIAQLSGEGH 524 (1057)
T ss_pred HHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhcCCCccceEEEECCCCeEEEEEecccC
Confidence 99999988999999998888887889999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcccccccCCCCCcccccCCCCCCCCCCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEE
Q 001380 558 RKDLDDLVEAALLFYGKKKLLDNTPLPLSLEKDNDPRLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQ 637 (1089)
Q Consensus 558 ~~~l~~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~ 637 (1089)
.+.++++|+.++.+++.++++++.++|..++.+++++..+++|.+|+++++|+.+|+|||+|+++|||++++.+|+++..
T Consensus 525 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ 604 (1057)
T PLN02919 525 RKDLDDLVEAALQYYGEKKLLDSTPLPLSLEKDNDPRLLTSPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQ 604 (1057)
T ss_pred HHHHHHHHHHHHHhhccccccccCCCcccccccCCcccccccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEE
Confidence 99999999999999999999999999999999999999899999999999998789999999999999999999999999
Q ss_pred EecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCC
Q 001380 638 IGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNS 717 (1089)
Q Consensus 638 i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~ 717 (1089)
+++.+..|+.||.+..+.|+.|+||+++++++.|||+|++||+|+++|+.++.++++++.|..+..+.++..+..+.+++
T Consensus 605 ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~ 684 (1057)
T PLN02919 605 IGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNS 684 (1057)
T ss_pred EccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCC
Confidence 98877889999999999999999999999998899999999999999999999999999998887766666666677999
Q ss_pred ceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeE
Q 001380 718 PWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSI 797 (1089)
Q Consensus 718 P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I 797 (1089)
|++|+++++++.+||+|.++|+|+++|..++.+..+.|.|.....++.......+.+|+||+++++|++|||+|+++++|
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I 764 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI 764 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence 99999999777999999999999999999999999999887766666655556789999999999998899999999999
Q ss_pred EEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccC
Q 001380 798 RALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIG 877 (1089)
Q Consensus 798 ~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g 877 (1089)
++++++++....++++++..+.+++.||+.+|.+..+.+++|.||+++++|++||+|++||+|+++|++++.+.+++|+|
T Consensus 765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G 844 (1057)
T PLN02919 765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTG 844 (1057)
T ss_pred EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccC
Confidence 99999988888888888888888999999999888899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCCCc-eEEEEeecccCCCCCCCCCcccccccCCCCC
Q 001380 878 KAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKEEP-ELQTLELKGVQPPTPKSRSPKRLRRRSSPDA 956 (1089)
Q Consensus 878 ~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~~~-~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~ 956 (1089)
..|+.+|....++|++|.||+++++|+|||+|++||+|+++++.+... .+.++++.++++|.+..+.+.++.++++.++
T Consensus 845 ~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 924 (1057)
T PLN02919 845 KAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEAAEILTLELKGVQPPRPKSKSLKRLRRRSSADT 924 (1057)
T ss_pred CcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCccceeEeeccccccCCCCcccchhhhhhcccccC
Confidence 999999988899999999999999999999999999999999988743 4678888999999987777788777777899
Q ss_pred ceEEecCCCccceEEEEEEEcCCCcccCcCCCceeEEEecCCCeEEecCCCCccCCCCceEEEeeecCCCcceEEEEEEE
Q 001380 957 QTIVVDGGLSNEGNIYLKISLPEEYHFSKEARSKFSVDVEPENAVIIDPLDGNLSPEGSAVLHFRRMSPSVSTGRISCKV 1036 (1089)
Q Consensus 957 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1089)
.++.++++....+++++++.||+||||+++|+|||.++.+|.+.+.+.|.+|.++.+|+++++++|...+..+.+|+|++
T Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1004 (1057)
T PLN02919 925 QVIKVDGVTSLEGDLQLKISLPPGYHFSKEARSKFEVEVEPENAVDIDPDEGTLSPDGRASLHFKRSSASASTGRISCKV 1004 (1057)
T ss_pred ceeecCCcccccceEEEEEECCCCCccCcCCCceeEEEeccCCceEecCCCceECCCCeEEEEEeeCCCccceeeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888999999999
Q ss_pred EeecCCCCccccceEEeeeeeeccCCCCCeeeeeeeeeccCCCCCCcccccCC
Q 001380 1037 YYCKEDEVCLYKPLLFEVPFQEEVPNSPPAEITLPYDLKPKILTNSLQLPVAP 1089 (1089)
Q Consensus 1037 ~~c~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1089 (1089)
|||++|++|+||++.|+|||+++...+.+++++|+|+|||+++++++|+++++
T Consensus 1005 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1057 (1057)
T PLN02919 1005 YYCKEDEVCLYQSLVFEVPFEEENGGESSSSITLKYTVKPKAPQPSLQLPITR 1057 (1057)
T ss_pred EEecCCcEEEEEeEEEeeeeeeccCCCCCcceeEEEEeccCCCCccccccccC
Confidence 99999999999999999999976778999999999999999999999998875
|
|
| >PLN02770 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=249.85 Aligned_cols=214 Identities=26% Similarity=0.380 Sum_probs=174.3
Q ss_pred CCCceEEEEecCCcccCCchHHHHHHHHHHHHcCC----CCCHHhH-hhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 001380 76 WGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGV----EVTVEDF-LPFMGTGEANFLGGVASVKGVKGFDSEAAKKRF 150 (1089)
Q Consensus 76 ~~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (1089)
..++++|||||||||+|+...+..++.++++++|+ +.+.+++ ..+.+.+....+..+... ... ...+....+
T Consensus 19 ~~~~k~viFDlDGTLiDs~~~~~~a~~~~~~~~g~~~g~~~~~~~~~~~~~G~~~~~~~~~~~~~-~~~--~~~~~~~~~ 95 (248)
T PLN02770 19 LAPLEAVLFDVDGTLCDSDPLHYYAFREMLQEINFNGGVPITEEFFVENIAGKHNEDIALGLFPD-DLE--RGLKFTDDK 95 (248)
T ss_pred cCccCEEEEcCCCccCcCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHcCCCCHHHHHHHHcCc-chh--hHHHHHHHH
Confidence 35679999999999999999999999999999864 3455543 455677766666554321 110 111223344
Q ss_pred HHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHH
Q 001380 151 FEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLS 230 (1089)
Q Consensus 151 ~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~ 230 (1089)
.+.|.+..... ..++||+.++|++|+++|++++|+||+.+..++..++++|+. .+|+.+++++++...||+|++|.+
T Consensus 96 ~~~y~~~~~~~--~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~-~~Fd~iv~~~~~~~~KP~p~~~~~ 172 (248)
T PLN02770 96 EALFRKLASEQ--LKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLS-DFFQAVIIGSECEHAKPHPDPYLK 172 (248)
T ss_pred HHHHHHHHHhc--CCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCCh-hhCcEEEecCcCCCCCCChHHHHH
Confidence 44454443332 378999999999999999999999999999999999999996 999999999999999999999999
Q ss_pred HHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHH
Q 001380 231 ASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDIL 295 (1089)
Q Consensus 231 ~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll 295 (1089)
+++++|++|++|+||||+..|+++|+++|+++|+|.+|...+.+...+|++++.++.++.+...+
T Consensus 173 a~~~~~~~~~~~l~vgDs~~Di~aA~~aGi~~i~v~~g~~~~~l~~~~a~~vi~~~~e~~~~~~~ 237 (248)
T PLN02770 173 ALEVLKVSKDHTFVFEDSVSGIKAGVAAGMPVVGLTTRNPESLLMEAKPTFLIKDYEDPKLWAAL 237 (248)
T ss_pred HHHHhCCChhHEEEEcCCHHHHHHHHHCCCEEEEEeCCCCHHHHhhcCCCEEeccchhhHHHHHH
Confidence 99999999999999999999999999999999999998766677778999999999997544333
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-25 Score=281.39 Aligned_cols=275 Identities=23% Similarity=0.379 Sum_probs=212.9
Q ss_pred CCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCC
Q 001380 648 DGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPIN 727 (1089)
Q Consensus 648 dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g 727 (1089)
|+..-...|..|.|+++++.++.|||+|+.+|+|+++|+++..+..+.+.|..|.. .+......|+.|+||++++++
T Consensus 559 ~~~~~~s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~---dG~~~~a~f~~P~GIavd~~g 635 (1057)
T PLN02919 559 DPRLLTSPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLR---DGSFEDATFNRPQGLAYNAKK 635 (1057)
T ss_pred CcccccccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCC---CCchhccccCCCcEEEEeCCC
Confidence 33333456899999999987666999999999999999988877777665655432 233445679999999999998
Q ss_pred CEEEEEECCCcEEEEEECCCCeEEEEeCCCccccC-CC-CCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCC
Q 001380 728 EKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNL-NG-SSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTG 805 (1089)
Q Consensus 728 ~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~-~g-~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~ 805 (1089)
+.|||+|.++|+|+++|..++.+++++|+|..... .| .......+.+|.+|+++++++.|||+|.++++|++++..++
T Consensus 636 n~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g 715 (1057)
T PLN02919 636 NLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDG 715 (1057)
T ss_pred CEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCC
Confidence 89999999999999999999999999987654321 11 11122347899999999966699999999999999999888
Q ss_pred CeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEEEeCCCCEEEEEeCCCCeEEEEeccCC------
Q 001380 806 GSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADSYNHKIKKLDPASNRVSTLAGIGK------ 878 (1089)
Q Consensus 806 ~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~~n~~I~~~d~~~~~v~t~~g~g~------ 878 (1089)
.+.++.|.... ....| .......+.+|.||+++++|. |||+|+.+|+|+++|++++....+++...
T Consensus 716 ~v~~~~G~G~~----~~~~g---~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l 788 (1057)
T PLN02919 716 VTRVFSGDGYE----RNLNG---SSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNL 788 (1057)
T ss_pred eEEEEecCCcc----ccCCC---CccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCccc
Confidence 77777653210 00111 122345688999999999985 99999999999999998877766654221
Q ss_pred --CCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCCCceEEEEeecc
Q 001380 879 --AGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKEEPELQTLELKG 934 (1089)
Q Consensus 879 --~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~~~~~~~l~~~~ 934 (1089)
.|..+|....+.++.|.||+++++|+|||+|+.||+|+++++.+. .+.++.+.|
T Consensus 789 ~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg--~v~tiaG~G 844 (1057)
T PLN02919 789 FKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATK--RVTTLAGTG 844 (1057)
T ss_pred ccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCC--eEEEEeccC
Confidence 122345455678999999999999999999999999999999887 677777554
|
|
| >PRK13288 pyrophosphatase PpaX; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6e-26 Score=241.96 Aligned_cols=207 Identities=23% Similarity=0.381 Sum_probs=174.0
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcCCC-CCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVE-VTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLD 156 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1089)
++++|+||+||||+|+...+..++.+++++++.. .+.+++....|.+....+..+. ....+.....+.+.+.+
T Consensus 2 ~~~~viFD~DGTL~ds~~~~~~a~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 75 (214)
T PRK13288 2 KINTVLFDLDGTLINTNELIISSFLHTLKTYYPNQYKREDVLPFIGPSLHDTFSKID------ESKVEEMITTYREFNHE 75 (214)
T ss_pred CccEEEEeCCCcCccCHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCcCHHHHHHhcC------HHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999998764 5777788888887666554431 11233333444444333
Q ss_pred HhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcC
Q 001380 157 KYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILN 236 (1089)
Q Consensus 157 ~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lg 236 (1089)
.... ...++||+.++|+.|+++|++++|+||+....++..++.+|+. .+|+.++++++....||+|++|.+++++++
T Consensus 76 ~~~~--~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~-~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~ 152 (214)
T PRK13288 76 HHDE--LVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLD-EFFDVVITLDDVEHAKPDPEPVLKALELLG 152 (214)
T ss_pred hhhh--hcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCh-hceeEEEecCcCCCCCCCcHHHHHHHHHcC
Confidence 3322 2378999999999999999999999999999999999999997 999999999999999999999999999999
Q ss_pred CCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC-CHHHHhhcCCcEEecCcccCCHHHHH
Q 001380 237 VPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL-SEERLKEASPSLIRKEIGSVSLNDIL 295 (1089)
Q Consensus 237 v~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~-~~~~l~~~~~d~vi~dl~el~i~~ll 295 (1089)
+++++++||||+.+|+++|+++|+++++|.+|. ..+++.+..|+++++++.++ .+++
T Consensus 153 ~~~~~~~~iGDs~~Di~aa~~aG~~~i~v~~g~~~~~~l~~~~~~~~i~~~~~l--~~~i 210 (214)
T PRK13288 153 AKPEEALMVGDNHHDILAGKNAGTKTAGVAWTIKGREYLEQYKPDFMLDKMSDL--LAIV 210 (214)
T ss_pred CCHHHEEEECCCHHHHHHHHHCCCeEEEEcCCCCCHHHHhhcCcCEEECCHHHH--HHHH
Confidence 999999999999999999999999999999986 56677778899999999887 4444
|
|
| >TIGR03351 PhnX-like phosphonatase-like hydrolase | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.8e-26 Score=242.77 Aligned_cols=210 Identities=24% Similarity=0.356 Sum_probs=178.8
Q ss_pred ceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhh-hcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHH
Q 001380 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLP-FMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDK 157 (1089)
Q Consensus 79 ~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (1089)
+++|+||+||||+|+.+.+..++.++++++|...+.+++.. +.+.+...+++.+....+......++....+.+.+.+.
T Consensus 1 ~k~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (220)
T TIGR03351 1 ISLVVLDMAGTTVDEDGLVYRALRQAVTAAGLSPTPEEVQSAWMGQSKIEAIRALLALDGADEAEAQAAFADFEERLAEA 80 (220)
T ss_pred CcEEEEecCCCeeccCchHHHHHHHHHHHcCCCCCHHHHHHhhcCCCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999888777766 77888888777776655543222334455555555554
Q ss_pred hcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCC-CCccEEEEcCCccCCCCCHHHHHHHHHHcC
Q 001380 158 YAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPV-SMFDAIVSADAFENLKPAPDIFLSASKILN 236 (1089)
Q Consensus 158 ~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~-~~fd~i~~~~~~~~~KP~~~~~~~~l~~lg 236 (1089)
+... ...++||+.++|+.|+++|++++|+||+....++..++.+++.. .+|+.++++++....||+|++|..+++++|
T Consensus 81 ~~~~-~~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~ 159 (220)
T TIGR03351 81 YDDG-PPVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTG 159 (220)
T ss_pred hccc-CCccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcC
Confidence 4322 24799999999999999999999999999999999999999831 789999999999899999999999999999
Q ss_pred CC-CCcEEEEcCChhhHHHHHHcCCeE-EEEcCCC-CHHHHhhcCCcEEecCcccC
Q 001380 237 VP-TSECIVIEDALAGVQAAKAAQMRC-IAVTTTL-SEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 237 v~-p~~~v~VGD~~~Di~aA~~aG~~~-i~V~~g~-~~~~l~~~~~d~vi~dl~el 289 (1089)
+. |++|+||||+.+|+++|+++||.+ +++.+|. ..+.+...++++++.++.++
T Consensus 160 ~~~~~~~~~igD~~~Di~aa~~aG~~~~i~~~~g~~~~~~~~~~~~~~~i~~~~~l 215 (220)
T TIGR03351 160 VQDVQSVAVAGDTPNDLEAGINAGAGAVVGVLTGAHDAEELSRHPHTHVLDSVADL 215 (220)
T ss_pred CCChhHeEEeCCCHHHHHHHHHCCCCeEEEEecCCCcHHHHhhcCCceeecCHHHH
Confidence 97 799999999999999999999999 9999886 66777778999999999877
|
This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the |
| >COG0546 Gph Predicted phosphatases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-25 Score=240.16 Aligned_cols=210 Identities=29% Similarity=0.430 Sum_probs=182.0
Q ss_pred CCceEEEEecCCcccCCchHHHHHHHHHHHHcCCC-CCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 001380 77 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVE-VTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYL 155 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (1089)
+++++|+||+||||+|+...+..+++.+++++|+. ...+++....+.+................ ..+..+.+.+.+.
T Consensus 2 ~~~~~iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 79 (220)
T COG0546 2 MMIKAILFDLDGTLVDSAEDILRAFNAALAELGLPPLDEEEIRQLIGLGLDELIERLLGEADEEA--AAELVERLREEFL 79 (220)
T ss_pred CCCCEEEEeCCCccccChHHHHHHHHHHHHHcCCCCCCHHHHHHHhcCCHHHHHHHHhccccchh--HHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999 78899999999888877776654333221 1144455555554
Q ss_pred HHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHc
Q 001380 156 DKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKIL 235 (1089)
Q Consensus 156 ~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~l 235 (1089)
+.+.......++||+.++|+.|+++|++++|+||.....++..++++|+. .+|+.+++.+.....||+|..+..+++++
T Consensus 80 ~~~~~~~~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~-~~F~~i~g~~~~~~~KP~P~~l~~~~~~~ 158 (220)
T COG0546 80 TAYAELLESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLA-DYFDVIVGGDDVPPPKPDPEPLLLLLEKL 158 (220)
T ss_pred HHHHhhccCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCc-cccceEEcCCCCCCCCcCHHHHHHHHHHh
Confidence 44433312378999999999999999999999999999999999999997 99999999888899999999999999999
Q ss_pred CCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC-CHHHHhhcCCcEEecCcccC
Q 001380 236 NVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL-SEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 236 gv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~-~~~~l~~~~~d~vi~dl~el 289 (1089)
|++|++++||||+.+|+++|++||+.+++|.+|. ..+.+....||+++.++.+|
T Consensus 159 ~~~~~~~l~VGDs~~Di~aA~~Ag~~~v~v~~g~~~~~~l~~~~~d~vi~~~~el 213 (220)
T COG0546 159 GLDPEEALMVGDSLNDILAAKAAGVPAVGVTWGYNSREELAQAGADVVIDSLAEL 213 (220)
T ss_pred CCChhheEEECCCHHHHHHHHHcCCCEEEEECCCCCCcchhhcCCCEEECCHHHH
Confidence 9998899999999999999999999999999997 57888888999999999888
|
|
| >TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.8e-26 Score=246.68 Aligned_cols=208 Identities=25% Similarity=0.373 Sum_probs=169.0
Q ss_pred ceEEEEecCCcccCCch-HHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHH----------HhhcCCCC--CCHHH
Q 001380 79 VSAVLFDMDGVLCNSEE-PSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGV----------ASVKGVKG--FDSEA 145 (1089)
Q Consensus 79 ~k~ViFD~DGTL~d~~~-~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~--~~~~~ 145 (1089)
+++||||+||||+|+.. .+..++.++++++|++.+.+++....+.+.......+ ....+... ...+.
T Consensus 2 ~k~viFD~DGTLiDs~~~~~~~a~~~~~~~~g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR01422 2 IEAVIFDWAGTTVDFGSFAPTQAFVEAFAEFGVQITLEEARGPMGLGKWDHIRALLKMPAVAERWRAKFGRLPTEADIEA 81 (253)
T ss_pred ceEEEEeCCCCeecCCCccHHHHHHHHHHHcCCCccHHHHHHhcCccHHHHHHHHhcCHHHHHHHHHHhCCCCCHHHHHH
Confidence 68999999999999865 3578999999999998888888777777654443322 22223211 11223
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCc-cEEEEcCCccCCCCC
Q 001380 146 AKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMF-DAIVSADAFENLKPA 224 (1089)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~f-d~i~~~~~~~~~KP~ 224 (1089)
....+.+.+.+.+... ..++||+.++|+.|+++|++++|+||.....++.+++++|+. .+| |.|++++++...||+
T Consensus 82 ~~~~~~~~~~~~~~~~--~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~-~~f~d~ii~~~~~~~~KP~ 158 (253)
T TIGR01422 82 IYEAFEPLQLAKLAEY--SSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQ-GYRPDYNVTTDDVPAGRPA 158 (253)
T ss_pred HHHHHHHHHHHHHHhc--CccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhc-CCCCceEEccccCCCCCCC
Confidence 3334444444433332 478999999999999999999999999999999999999996 875 999999999999999
Q ss_pred HHHHHHHHHHcCCC-CCcEEEEcCChhhHHHHHHcCCeEEEEcCCCC------------------------HHHHhhcCC
Q 001380 225 PDIFLSASKILNVP-TSECIVIEDALAGVQAAKAAQMRCIAVTTTLS------------------------EERLKEASP 279 (1089)
Q Consensus 225 ~~~~~~~l~~lgv~-p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~------------------------~~~l~~~~~ 279 (1089)
|++|..+++++|+. |++|+||||+.+|+++|+++||++|+|.+|.. .+++.+++|
T Consensus 159 p~~~~~a~~~l~~~~~~~~l~IGDs~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 238 (253)
T TIGR01422 159 PWMALKNAIELGVYDVAACVKVGDTVPDIEEGRNAGMWTVGLILSSNELGLSEEEYRALDPAELEARRAEATARLKAAGA 238 (253)
T ss_pred HHHHHHHHHHcCCCCchheEEECCcHHHHHHHHHCCCeEEEEecCCcccCCCHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999995 99999999999999999999999999999863 467888899
Q ss_pred cEEecCcccC
Q 001380 280 SLIRKEIGSV 289 (1089)
Q Consensus 280 d~vi~dl~el 289 (1089)
+++++++.++
T Consensus 239 ~~v~~~~~el 248 (253)
T TIGR01422 239 HYVIDTLAEL 248 (253)
T ss_pred CEehhcHHHH
Confidence 9999999987
|
This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent. |
| >PLN02575 haloacid dehalogenase-like hydrolase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=250.78 Aligned_cols=216 Identities=21% Similarity=0.294 Sum_probs=177.6
Q ss_pred CCceEEEEecCCcccCCch-HHHHHHHHHHHHcCCCCCHHh-HhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 001380 77 GKVSAVLFDMDGVLCNSEE-PSRRAAVDVFAEMGVEVTVED-FLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIY 154 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~-~~~~a~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (1089)
...++|||||||||+|+.. .+..+|.++++++|+..+.++ +..+.|.+...++..+..... .....++...++.+.|
T Consensus 129 ~~~~~VIFDlDGTLIDS~~~i~~~a~~~l~~e~G~~~~~~e~~~~~~G~~~~~~l~~ll~~~~-~~~~~e~l~~~~~~~y 207 (381)
T PLN02575 129 CGWLGAIFEWEGVIIEDNPDLENQAWLTLAQEEGKSPPPAFILRRVEGMKNEQAISEVLCWSR-DPAELRRMATRKEEIY 207 (381)
T ss_pred CCCCEEEEcCcCcceeCHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHhhccC-CHHHHHHHHHHHHHHH
Confidence 4689999999999999987 566799999999999876664 567888888887776654221 1112233444455555
Q ss_pred HHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHH
Q 001380 155 LDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKI 234 (1089)
Q Consensus 155 ~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~ 234 (1089)
.+..... ..++||+.++|+.|+++|++++|+||+.+..++..++.+|+. .|||.|++++++...||+|++|..++++
T Consensus 208 ~~~~~~~--~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~-~yFd~Iv~sddv~~~KP~Peifl~A~~~ 284 (381)
T PLN02575 208 QALQGGI--YRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIR-GFFSVIVAAEDVYRGKPDPEMFIYAAQL 284 (381)
T ss_pred HHHhccC--CCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCH-HHceEEEecCcCCCCCCCHHHHHHHHHH
Confidence 4444322 378999999999999999999999999999999999999996 9999999999999999999999999999
Q ss_pred cCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhcc
Q 001380 235 LNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTGG 298 (1089)
Q Consensus 235 lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~~ 298 (1089)
+|+.|++|+||||+..|+++|+++||++|+|.++....++ ..+++++.++.+|.+..+....
T Consensus 285 lgl~Peecl~IGDS~~DIeAAk~AGm~~IgV~~~~~~~~l--~~Ad~iI~s~~EL~~~~l~~l~ 346 (381)
T PLN02575 285 LNFIPERCIVFGNSNQTVEAAHDARMKCVAVASKHPIYEL--GAADLVVRRLDELSIVDLKNLA 346 (381)
T ss_pred cCCCcccEEEEcCCHHHHHHHHHcCCEEEEECCCCChhHh--cCCCEEECCHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999987544443 3589999999999776664443
|
|
| >PRK10826 2-deoxyglucose-6-phosphatase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=238.95 Aligned_cols=214 Identities=28% Similarity=0.433 Sum_probs=177.4
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCH-HhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTV-EDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLD 156 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1089)
++++|+||+||||+|+...+..++.++++++|+..+. +.+...++.........+................++.+.+.+
T Consensus 6 ~~k~iiFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (222)
T PRK10826 6 QILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRREELPDTLGLRIDQVVDLWYARQPWNGPSRQEVVQRIIARVIS 85 (222)
T ss_pred cCcEEEEcCCCCCCcCHHHHHHHHHHHHHHCCCCCCHHHHHHHhhCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999998765 566677777766665554444333333445555566665555
Q ss_pred HhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcC
Q 001380 157 KYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILN 236 (1089)
Q Consensus 157 ~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lg 236 (1089)
.+... ..++||+.++|+.|+++|++++|+||+....++..++++++. .+|+.+++++++..+||+|++|..+++++|
T Consensus 86 ~~~~~--~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~-~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~ 162 (222)
T PRK10826 86 LIEET--RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLR-DYFDALASAEKLPYSKPHPEVYLNCAAKLG 162 (222)
T ss_pred HHhcC--CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcch-hcccEEEEcccCCCCCCCHHHHHHHHHHcC
Confidence 44433 379999999999999999999999999999999999999996 999999999999999999999999999999
Q ss_pred CCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHH
Q 001380 237 VPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDI 294 (1089)
Q Consensus 237 v~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~l 294 (1089)
++|++|+||||+.+|+++|+++|+++|++.++....+.....+++++.++.++.-..+
T Consensus 163 ~~~~~~~~igDs~~Di~aA~~aG~~~i~v~~~~~~~~~~~~~~~~~~~~~~dl~~~~~ 220 (222)
T PRK10826 163 VDPLTCVALEDSFNGMIAAKAARMRSIVVPAPEQQNDPRWALADVKLESLTELTAADL 220 (222)
T ss_pred CCHHHeEEEcCChhhHHHHHHcCCEEEEecCCccCchhhhhhhheeccCHHHHhhhhh
Confidence 9999999999999999999999999999998764433334468999999988844333
|
|
| >PRK13226 phosphoglycolate phosphatase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=241.31 Aligned_cols=208 Identities=18% Similarity=0.263 Sum_probs=173.4
Q ss_pred CCceEEEEecCCcccCCchHHHHHHHHHHHHcCCC-CCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 001380 77 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVE-VTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYL 155 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (1089)
.|+++||||+||||+|+...+..++..+++++|.. .+.+++....+.+...+....... ......++....+.+.|.
T Consensus 10 ~~~k~viFD~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 87 (229)
T PRK13226 10 RFPRAVLFDLDGTLLDSAPDMLATVNAMLAARGRAPITLAQLRPVVSKGARAMLAVAFPE--LDAAARDALIPEFLQRYE 87 (229)
T ss_pred ccCCEEEEcCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhhhHHHHHHHHHhcc--CChHHHHHHHHHHHHHHH
Confidence 45699999999999999999999999999999986 566777777776665554443221 111123455566666666
Q ss_pred HHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHc
Q 001380 156 DKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKIL 235 (1089)
Q Consensus 156 ~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~l 235 (1089)
..+... ..++||+.++|+.|+++|++++|+||+....+...++++++. .+|+.++++++....||+|++|.++++++
T Consensus 88 ~~~~~~--~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~-~~f~~i~~~~~~~~~KP~p~~~~~~~~~l 164 (229)
T PRK13226 88 ALIGTQ--SQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWE-QRCAVLIGGDTLAERKPHPLPLLVAAERI 164 (229)
T ss_pred Hhhhhc--CeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCch-hcccEEEecCcCCCCCCCHHHHHHHHHHh
Confidence 554433 378999999999999999999999999999999999999996 99999999998888999999999999999
Q ss_pred CCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC--CHHHHhhcCCcEEecCcccC
Q 001380 236 NVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL--SEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 236 gv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~--~~~~l~~~~~d~vi~dl~el 289 (1089)
|++|++|+||||+.+|+++|+++|+++|+|.+|. ..+.+...+|+++++++.+|
T Consensus 165 ~~~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~i~~~~el 220 (229)
T PRK13226 165 GVAPTDCVYVGDDERDILAARAAGMPSVAALWGYRLHDDDPLAWQADVLVEQPQLL 220 (229)
T ss_pred CCChhhEEEeCCCHHHHHHHHHCCCcEEEEeecCCCCCcChhhcCCCeeeCCHHHH
Confidence 9999999999999999999999999999999986 23445567899999999887
|
|
| >PLN03243 haloacid dehalogenase-like hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-25 Score=239.56 Aligned_cols=215 Identities=21% Similarity=0.274 Sum_probs=169.7
Q ss_pred CCceEEEEecCCcccCCc-hHHHHHHHHHHHHcCCCCCHHhH-hhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 001380 77 GKVSAVLFDMDGVLCNSE-EPSRRAAVDVFAEMGVEVTVEDF-LPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIY 154 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~-~~~~~a~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (1089)
..+++|||||||||+|+. ..+..+|.++++++|+.++.++. ....|.+....++.+.... ............+...+
T Consensus 22 ~~~k~vIFDlDGTLvDS~~~~~~~a~~~~~~~~G~~~~~~e~~~~~~G~~~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~ 100 (260)
T PLN03243 22 CGWLGVVLEWEGVIVEDDSELERKAWRALAEEEGKRPPPAFLLKRAEGMKNEQAISEVLCWS-RDFLQMKRLAIRKEDLY 100 (260)
T ss_pred CCceEEEEeCCCceeCCchHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHhccC-CCHHHHHHHHHHHHHHH
Confidence 468999999999999996 46678999999999998766554 5677888777766554321 11101122233333333
Q ss_pred HHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHH
Q 001380 155 LDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKI 234 (1089)
Q Consensus 155 ~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~ 234 (1089)
. .+.. ....++||+.++|+.|+++|++++|+||.....++..++++|+. .+|+.+++++++...||+|++|..++++
T Consensus 101 ~-~~~~-~~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~-~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~ 177 (260)
T PLN03243 101 E-YMQG-GLYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGME-GFFSVVLAAEDVYRGKPDPEMFMYAAER 177 (260)
T ss_pred H-HHHc-cCcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCH-hhCcEEEecccCCCCCCCHHHHHHHHHH
Confidence 2 2221 13478999999999999999999999999999999999999996 9999999999999999999999999999
Q ss_pred cCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhcc
Q 001380 235 LNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTGG 298 (1089)
Q Consensus 235 lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~~ 298 (1089)
+|++|++|+||||+..|+++|+++||++|+|.+......+. .+++++.++.++. ...+..+
T Consensus 178 l~~~p~~~l~IgDs~~Di~aA~~aG~~~i~v~g~~~~~~l~--~ad~vi~~~~el~-~~~~~~~ 238 (260)
T PLN03243 178 LGFIPERCIVFGNSNSSVEAAHDGCMKCVAVAGKHPVYELS--AGDLVVRRLDDLS-VVDLKNL 238 (260)
T ss_pred hCCChHHeEEEcCCHHHHHHHHHcCCEEEEEecCCchhhhc--cCCEEeCCHHHHH-HHHHhhh
Confidence 99999999999999999999999999999997433444443 5899999999994 3344444
|
|
| >PRK13478 phosphonoacetaldehyde hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-25 Score=242.99 Aligned_cols=214 Identities=25% Similarity=0.379 Sum_probs=170.5
Q ss_pred CCceEEEEecCCcccCCchH-HHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHH----------HhhcCCCCC--CH
Q 001380 77 GKVSAVLFDMDGVLCNSEEP-SRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGV----------ASVKGVKGF--DS 143 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~-~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~--~~ 143 (1089)
+++++||||+||||+|+... +..++.++++++|++.+.+++...++.+.......+ ....+.... ..
T Consensus 2 ~~~k~vIFDlDGTLiDs~~~~~~~a~~~~~~~~g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 81 (267)
T PRK13478 2 MKIQAVIFDWAGTTVDFGSFAPTQAFVEAFAQFGVEITLEEARGPMGLGKWDHIRALLKMPRVAARWQAVFGRLPTEADV 81 (267)
T ss_pred CceEEEEEcCCCCeecCCCccHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHHhcHHHHHHHHHHhCCCCCHHHH
Confidence 45899999999999998653 468999999999998887777777776654433322 222332210 11
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCC-ccEEEEcCCccCCC
Q 001380 144 EAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSM-FDAIVSADAFENLK 222 (1089)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~-fd~i~~~~~~~~~K 222 (1089)
.+....+.+.+.+.+... ..++||+.++|+.|+++|++++|+||.....++..++.+++. .+ +|.+++++++...|
T Consensus 82 ~~~~~~~~~~~~~~~~~~--~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~-~~~~d~i~~~~~~~~~K 158 (267)
T PRK13478 82 DALYAAFEPLQIAKLADY--ATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQ-GYRPDHVVTTDDVPAGR 158 (267)
T ss_pred HHHHHHHHHHHHHHHhhc--CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhc-CCCceEEEcCCcCCCCC
Confidence 233334444444433332 378999999999999999999999999999999999999986 66 49999999999999
Q ss_pred CCHHHHHHHHHHcCCC-CCcEEEEcCChhhHHHHHHcCCeEEEEcCCCC------------------------HHHHhhc
Q 001380 223 PAPDIFLSASKILNVP-TSECIVIEDALAGVQAAKAAQMRCIAVTTTLS------------------------EERLKEA 277 (1089)
Q Consensus 223 P~~~~~~~~l~~lgv~-p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~------------------------~~~l~~~ 277 (1089)
|+|++|..+++++|+. +++|+||||+.+|+++|+++|+++|+|.+|.. .+++.+.
T Consensus 159 P~p~~~~~a~~~l~~~~~~e~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 238 (267)
T PRK13478 159 PYPWMALKNAIELGVYDVAACVKVDDTVPGIEEGLNAGMWTVGVILSGNELGLSEEEYQALSAAELAARRERARARLRAA 238 (267)
T ss_pred CChHHHHHHHHHcCCCCCcceEEEcCcHHHHHHHHHCCCEEEEEccCcccccCCHHHHHhcCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999996 69999999999999999999999999999863 3577788
Q ss_pred CCcEEecCcccCCHHHHH
Q 001380 278 SPSLIRKEIGSVSLNDIL 295 (1089)
Q Consensus 278 ~~d~vi~dl~el~i~~ll 295 (1089)
+|+++++++.+| .++|
T Consensus 239 ~a~~vi~~~~~l--~~~l 254 (267)
T PRK13478 239 GAHYVIDTIADL--PAVI 254 (267)
T ss_pred CCCeehhhHHHH--HHHH
Confidence 999999999998 4554
|
|
| >TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.1e-25 Score=234.28 Aligned_cols=205 Identities=23% Similarity=0.368 Sum_probs=171.7
Q ss_pred EEEecCCcccCCchHHHHHHHHHHHHcCCC-CCHHhHhhhcCCCHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHHHh
Q 001380 82 VLFDMDGVLCNSEEPSRRAAVDVFAEMGVE-VTVEDFLPFMGTGEANFLGGVASVKGVKGF--DSEAAKKRFFEIYLDKY 158 (1089)
Q Consensus 82 ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 158 (1089)
||||+||||+|+...+..++.++++++|.. .+.+.+....+.+...+...+....+.... ...+..+.+.+.|.+.+
T Consensus 1 viFD~DGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (213)
T TIGR01449 1 VLFDLDGTLVDSAPDIAAAVNMALAALGLPPATLARVIGFIGNGVPVLMERVLAWAGQEPDAQRVAELRKLFDRHYEEVA 80 (213)
T ss_pred CeecCCCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhcccHHHHHHHHhhccccccChHHHHHHHHHHHHHHHHhc
Confidence 699999999999999999999999999986 577777777787777666666554443211 12233444444444443
Q ss_pred cCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCC
Q 001380 159 AKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVP 238 (1089)
Q Consensus 159 ~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~ 238 (1089)
... ..++||+.++|+.|+++|++++|+||+....++..++++|+. .+|+.++++++....||+|++|.++++++|++
T Consensus 81 ~~~--~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~-~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~ 157 (213)
T TIGR01449 81 GEL--TSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLA-KYFSVLIGGDSLAQRKPHPDPLLLAAERLGVA 157 (213)
T ss_pred ccc--CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcH-hhCcEEEecCCCCCCCCChHHHHHHHHHcCCC
Confidence 322 378999999999999999999999999999999999999996 99999999999999999999999999999999
Q ss_pred CCcEEEEcCChhhHHHHHHcCCeEEEEcCCC-CHHHHhhcCCcEEecCcccC
Q 001380 239 TSECIVIEDALAGVQAAKAAQMRCIAVTTTL-SEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 239 p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~-~~~~l~~~~~d~vi~dl~el 289 (1089)
|++|+||||+.+|+++|+++|+.+++|.+|. ..+.+...+++++++++.++
T Consensus 158 ~~~~~~igDs~~d~~aa~~aG~~~i~v~~g~~~~~~l~~~~a~~~i~~~~~l 209 (213)
T TIGR01449 158 PQQMVYVGDSRVDIQAARAAGCPSVLLTYGYRYGEAIDLLPPDVLYDSLNEL 209 (213)
T ss_pred hhHeEEeCCCHHHHHHHHHCCCeEEEEccCCCCCcchhhcCCCeEeCCHHHH
Confidence 9999999999999999999999999999987 45566667899999999886
|
This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702). |
| >COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-24 Score=230.84 Aligned_cols=190 Identities=37% Similarity=0.510 Sum_probs=159.2
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDK 157 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (1089)
++++|||||||||+|++..+.++|.++++++|+..+.+.+....+.........+.........................
T Consensus 1 ~~~avIFD~DGvLvDse~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (221)
T COG0637 1 MIKAVIFDMDGTLVDSEPLHARAWLEALKEYGIEISDEEIRELHGGGIARIIDLLRKLAAGEDPADLAELERLLYEAEAL 80 (221)
T ss_pred CCcEEEEcCCCCcCcchHHHHHHHHHHHHHcCCCCCHHHHHHHHCCChHHHHHHHHHHhcCCcccCHHHHHHHHHHHHHh
Confidence 47999999999999999999999999999999999998888888877666666666554432211122222222222222
Q ss_pred hcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCC
Q 001380 158 YAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNV 237 (1089)
Q Consensus 158 ~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv 237 (1089)
... ...++||+.++|++|+++|+++++.|+..+..++..++.+|+. .+|+.+++++++..+||+|++|.++++++|+
T Consensus 81 ~~~--~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~-~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv 157 (221)
T COG0637 81 ELE--GLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLL-DYFDVIVTADDVARGKPAPDIYLLAAERLGV 157 (221)
T ss_pred hhc--CCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccCh-hhcchhccHHHHhcCCCCCHHHHHHHHHcCC
Confidence 222 2379999999999999999999999999999999999999996 9999999999999999999999999999999
Q ss_pred CCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCC
Q 001380 238 PTSECIVIEDALAGVQAAKAAQMRCIAVTTTLS 270 (1089)
Q Consensus 238 ~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~ 270 (1089)
.|++||+|+|+.++|++|++|||.+|+|..+..
T Consensus 158 ~P~~CvviEDs~~Gi~Aa~aAGm~vv~v~~~~~ 190 (221)
T COG0637 158 DPEECVVVEDSPAGIQAAKAAGMRVVGVPAGHD 190 (221)
T ss_pred ChHHeEEEecchhHHHHHHHCCCEEEEecCCCC
Confidence 999999999999999999999999999998544
|
|
| >PRK13223 phosphoglycolate phosphatase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.9e-24 Score=234.30 Aligned_cols=211 Identities=23% Similarity=0.398 Sum_probs=171.1
Q ss_pred CCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCC-CHHhHhhhcCCCHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHH
Q 001380 77 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEV-TVEDFLPFMGTGEANFLGGVASV-KGVKGFDSEAAKKRFFEIY 154 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (1089)
+++++|+||+||||+|+...+..++.++++++|... ..+++..+.+.+...+...+... ....... +...+++.+.+
T Consensus 11 ~~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~ 89 (272)
T PRK13223 11 RLPRLVMFDLDGTLVDSVPDLAAAVDRMLLELGRPPAGLEAVRHWVGNGAPVLVRRALAGSIDHDGVD-DELAEQALALF 89 (272)
T ss_pred ccCCEEEEcCCCccccCHHHHHHHHHHHHHHcCCCCCCHHHHHHHhChhHHHHHHHHhcccccccCCC-HHHHHHHHHHH
Confidence 467999999999999999999999999999999985 44566677777766555544321 1111111 22233333333
Q ss_pred HHHhcCC-CCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHH
Q 001380 155 LDKYAKP-NSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASK 233 (1089)
Q Consensus 155 ~~~~~~~-~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~ 233 (1089)
.+.+... ....++||+.++|+.|+++|++++|+||.....++..++++++. .+|+.++++++....||+|++|+.+++
T Consensus 90 ~~~~~~~~~~~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~-~~f~~i~~~d~~~~~Kp~p~~~~~~~~ 168 (272)
T PRK13223 90 MEAYADSHELTVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIG-RYFRWIIGGDTLPQKKPDPAALLFVMK 168 (272)
T ss_pred HHHHHhcCcCCccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcH-hhCeEEEecCCCCCCCCCcHHHHHHHH
Confidence 3333221 12468999999999999999999999999999999999999996 999999999998889999999999999
Q ss_pred HcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC-CHHHHhhcCCcEEecCcccC
Q 001380 234 ILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL-SEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 234 ~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~-~~~~l~~~~~d~vi~dl~el 289 (1089)
++|+++++|+||||+.+|+++|+++||.+++|.+|. ..+++....+++++.++.+|
T Consensus 169 ~~g~~~~~~l~IGD~~~Di~aA~~aGi~~i~v~~G~~~~~~l~~~~~~~vi~~l~el 225 (272)
T PRK13223 169 MAGVPPSQSLFVGDSRSDVLAAKAAGVQCVALSYGYNHGRPIAEESPALVIDDLRAL 225 (272)
T ss_pred HhCCChhHEEEECCCHHHHHHHHHCCCeEEEEecCCCCchhhhhcCCCEEECCHHHH
Confidence 999999999999999999999999999999999986 56666667899999999887
|
|
| >PRK11587 putative phosphatase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.3e-24 Score=226.80 Aligned_cols=201 Identities=26% Similarity=0.372 Sum_probs=158.6
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHH--HH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEI--YL 155 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 155 (1089)
++++|+||+||||+|+...+..++.++++++|++.. +......+.+....++.+.. + ...+...+.+.+. +.
T Consensus 2 ~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~~-~~~~~~~g~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~ 75 (218)
T PRK11587 2 RCKGFLFDLDGTLVDSLPAVERAWSNWADRHGIAPD-EVLNFIHGKQAITSLRHFMA--G---ASEAEIQAEFTRLEQIE 75 (218)
T ss_pred CCCEEEEcCCCCcCcCHHHHHHHHHHHHHHcCCCHH-HHHHHHcCCCHHHHHHHHhc--c---CCcHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999998642 22333346666655554432 1 1223333333321 22
Q ss_pred HHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHc
Q 001380 156 DKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKIL 235 (1089)
Q Consensus 156 ~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~l 235 (1089)
..... ...++||+.++|+.|+++|++++|+||+........++..++ .+++.+++++++...||+|++|..+++++
T Consensus 76 ~~~~~--~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l--~~~~~i~~~~~~~~~KP~p~~~~~~~~~~ 151 (218)
T PRK11587 76 ATDTE--GITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGL--PAPEVFVTAERVKRGKPEPDAYLLGAQLL 151 (218)
T ss_pred Hhhhc--CceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCC--CCccEEEEHHHhcCCCCCcHHHHHHHHHc
Confidence 22222 347899999999999999999999999988888888888888 45788999988888999999999999999
Q ss_pred CCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCC
Q 001380 236 NVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVS 290 (1089)
Q Consensus 236 gv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~ 290 (1089)
|+.|++|+||||+..|+++|+++||.+++|.++....+ ...+++++.++.+|.
T Consensus 152 g~~p~~~l~igDs~~di~aA~~aG~~~i~v~~~~~~~~--~~~~~~~~~~~~el~ 204 (218)
T PRK11587 152 GLAPQECVVVEDAPAGVLSGLAAGCHVIAVNAPADTPR--LDEVDLVLHSLEQLT 204 (218)
T ss_pred CCCcccEEEEecchhhhHHHHHCCCEEEEECCCCchhh--hccCCEEecchhhee
Confidence 99999999999999999999999999999988753332 346899999999883
|
|
| >PRK13225 phosphoglycolate phosphatase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.4e-24 Score=231.51 Aligned_cols=205 Identities=19% Similarity=0.270 Sum_probs=168.1
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcCCC-CCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVE-VTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLD 156 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1089)
++++|+|||||||+|+...+..++.++++++|++ .+.+++....+.....+.+. .+......++..+++.+.+..
T Consensus 61 ~~k~vIFDlDGTLiDS~~~~~~a~~~~~~~~G~~~~~~~~~~~~~g~~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~ 136 (273)
T PRK13225 61 TLQAIIFDFDGTLVDSLPTVVAIANAHAPDFGYDPIDERDYAQLRQWSSRTIVRR----AGLSPWQQARLLQRVQRQLGD 136 (273)
T ss_pred hcCEEEECCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhCccHHHHHHH----cCCCHHHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999999999987 56666777777665555433 233222233444455444433
Q ss_pred HhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcC
Q 001380 157 KYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILN 236 (1089)
Q Consensus 157 ~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lg 236 (1089)
.+ . ...++||+.++|+.|+++|++++|+||+....++..++.+|+. .+|+.++++++. +++++.|.+++++++
T Consensus 137 ~~-~--~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~-~~F~~vi~~~~~---~~k~~~~~~~l~~~~ 209 (273)
T PRK13225 137 CL-P--ALQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLR-SLFSVVQAGTPI---LSKRRALSQLVAREG 209 (273)
T ss_pred hc-c--cCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCh-hheEEEEecCCC---CCCHHHHHHHHHHhC
Confidence 22 2 2378999999999999999999999999999999999999996 999999888765 356789999999999
Q ss_pred CCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC-CHHHHhhcCCcEEecCcccCCHHHHH
Q 001380 237 VPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL-SEERLKEASPSLIRKEIGSVSLNDIL 295 (1089)
Q Consensus 237 v~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~-~~~~l~~~~~d~vi~dl~el~i~~ll 295 (1089)
++|++|+||||+..|+++|+++||++|+|.+|. ..+++.+.+|+++++++.+| .+++
T Consensus 210 ~~p~~~l~IGDs~~Di~aA~~AG~~~I~v~~g~~~~~~l~~~~ad~~i~~~~eL--~~~~ 267 (273)
T PRK13225 210 WQPAAVMYVGDETRDVEAARQVGLIAVAVTWGFNDRQSLVAACPDWLLETPSDL--LQAV 267 (273)
T ss_pred cChhHEEEECCCHHHHHHHHHCCCeEEEEecCCCCHHHHHHCCCCEEECCHHHH--HHHH
Confidence 999999999999999999999999999999987 66678788999999999888 4444
|
|
| >PLN02940 riboflavin kinase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-23 Score=241.66 Aligned_cols=211 Identities=29% Similarity=0.415 Sum_probs=180.8
Q ss_pred CCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 001380 77 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLD 156 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1089)
..+++|+||+||||+|+...+..++.++++++|..++.+++....+.+....+..+....+... ..++....+.+.+.+
T Consensus 9 ~~ik~VIFDlDGTLvDt~~~~~~a~~~~~~~~G~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 87 (382)
T PLN02940 9 KLVSHVILDLDGTLLNTDGIVSDVLKAFLVKYGKQWDGREAQKIVGKTPLEAAATVVEDYGLPC-STDEFNSEITPLLSE 87 (382)
T ss_pred ccCCEEEECCcCcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999888888888888888777777766666543 455566666666655
Q ss_pred HhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHH-HCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHc
Q 001380 157 KYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLA-AAGLPVSMFDAIVSADAFENLKPAPDIFLSASKIL 235 (1089)
Q Consensus 157 ~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~-~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~l 235 (1089)
.+.. ..++||+.++|+.|+++|++++|+||..+..++..++ .+++. .+||.+++++++...||+|++|.++++++
T Consensus 88 ~~~~---~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~-~~Fd~ii~~d~v~~~KP~p~~~~~a~~~l 163 (382)
T PLN02940 88 QWCN---IKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWK-ESFSVIVGGDEVEKGKPSPDIFLEAAKRL 163 (382)
T ss_pred HHcc---CCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChH-hhCCEEEehhhcCCCCCCHHHHHHHHHHc
Confidence 4432 3689999999999999999999999999999988887 68996 99999999999999999999999999999
Q ss_pred CCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHH
Q 001380 236 NVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLND 293 (1089)
Q Consensus 236 gv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ 293 (1089)
|++|++|+||||+..|+++|+++||++|+|.++.... .....+++++.++.++....
T Consensus 164 gv~p~~~l~VGDs~~Di~aA~~aGi~~I~v~~g~~~~-~~~~~ad~~i~sl~el~~~~ 220 (382)
T PLN02940 164 NVEPSNCLVIEDSLPGVMAGKAAGMEVIAVPSIPKQT-HLYSSADEVINSLLDLQPEK 220 (382)
T ss_pred CCChhHEEEEeCCHHHHHHHHHcCCEEEEECCCCcch-hhccCccEEeCCHhHcCHHH
Confidence 9999999999999999999999999999999875322 23457999999999985444
|
|
| >TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-23 Score=223.25 Aligned_cols=200 Identities=27% Similarity=0.407 Sum_probs=165.6
Q ss_pred EEEecCCcccCCchHHHHHHHHHHHH-cCCC-CCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhc
Q 001380 82 VLFDMDGVLCNSEEPSRRAAVDVFAE-MGVE-VTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDKYA 159 (1089)
Q Consensus 82 ViFD~DGTL~d~~~~~~~a~~~~~~~-~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (1089)
||||+||||+|+...+..++++++++ +|.+ .+.+++..+.+.....+.+. .+... . ....+...+.. +.
T Consensus 1 iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~---~-~~~~~~~~~~~-~~ 71 (205)
T TIGR01454 1 VVFDLDGVLVDSFAVMREAFAIAYREVVGDGPAPFEEYRRHLGRYFPDIMRI----MGLPL---E-MEEPFVRESYR-LA 71 (205)
T ss_pred CeecCcCccccCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHhCccHHHHHHH----cCCCH---H-HHHHHHHHHHH-hh
Confidence 69999999999999999999999998 4764 56677777777766555433 22221 1 11122222222 11
Q ss_pred CCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCC
Q 001380 160 KPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPT 239 (1089)
Q Consensus 160 ~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p 239 (1089)
....++||+.++|++|+++|++++|+||+....++..++++|+. .+|+.++++++....||++++|.++++++|+++
T Consensus 72 --~~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~-~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~ 148 (205)
T TIGR01454 72 --GEVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLL-PLFDHVIGSDEVPRPKPAPDIVREALRLLDVPP 148 (205)
T ss_pred --cccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCCh-hheeeEEecCcCCCCCCChHHHHHHHHHcCCCh
Confidence 23488999999999999999999999999999999999999996 999999999998889999999999999999999
Q ss_pred CcEEEEcCChhhHHHHHHcCCeEEEEcCCC-CHHHHhhcCCcEEecCcccCCHHHHH
Q 001380 240 SECIVIEDALAGVQAAKAAQMRCIAVTTTL-SEERLKEASPSLIRKEIGSVSLNDIL 295 (1089)
Q Consensus 240 ~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~-~~~~l~~~~~d~vi~dl~el~i~~ll 295 (1089)
++|+||||+.+|+++|+++||.++++.+|. +.+++.+.+|++++.++.++ .+++
T Consensus 149 ~~~l~igD~~~Di~aA~~~Gi~~i~~~~g~~~~~~l~~~~~~~~~~~~~~l--~~~~ 203 (205)
T TIGR01454 149 EDAVMVGDAVTDLASARAAGTATVAALWGEGDAGELLAARPDFLLRKPQSL--LALC 203 (205)
T ss_pred hheEEEcCCHHHHHHHHHcCCeEEEEEecCCChhhhhhcCCCeeeCCHHHH--HHHh
Confidence 999999999999999999999999999997 77778788999999999887 4444
|
The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity. |
| >PRK13222 phosphoglycolate phosphatase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-23 Score=225.12 Aligned_cols=215 Identities=24% Similarity=0.343 Sum_probs=176.1
Q ss_pred CCCceEEEEecCCcccCCchHHHHHHHHHHHHcCCC-CCHHhHhhhcCCCHHHHHHHHHhhcCCC--CCCHHHHHHHHHH
Q 001380 76 WGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVE-VTVEDFLPFMGTGEANFLGGVASVKGVK--GFDSEAAKKRFFE 152 (1089)
Q Consensus 76 ~~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 152 (1089)
.+++++|+||+||||+|+...+..++..+++++|.. .+.+.+..+.+.+...+........+.. ....+.....+.+
T Consensus 3 ~~~~~~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (226)
T PRK13222 3 FMDIRAVAFDLDGTLVDSAPDLAAAVNAALAALGLPPAGEERVRTWVGNGADVLVERALTWAGREPDEELLEKLRELFDR 82 (226)
T ss_pred CCcCcEEEEcCCcccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhCccHHHHHHHHHhhccCCccHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999987 4666777777777766666554432211 1122333344444
Q ss_pred HHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHH
Q 001380 153 IYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSAS 232 (1089)
Q Consensus 153 ~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l 232 (1089)
.|....... ..++||+.++|+.|++.|++++|+||+....++.+++++++. .+|+.++++++....||+|++|+.++
T Consensus 83 ~~~~~~~~~--~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~-~~f~~~~~~~~~~~~kp~~~~~~~~~ 159 (226)
T PRK13222 83 HYAENVAGG--SRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIA-DYFSVVIGGDSLPNKKPDPAPLLLAC 159 (226)
T ss_pred HHHHhcccc--CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCc-cCccEEEcCCCCCCCCcChHHHHHHH
Confidence 444433222 378999999999999999999999999999999999999996 99999999999889999999999999
Q ss_pred HHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC-CHHHHhhcCCcEEecCcccCCHHHHH
Q 001380 233 KILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL-SEERLKEASPSLIRKEIGSVSLNDIL 295 (1089)
Q Consensus 233 ~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~-~~~~l~~~~~d~vi~dl~el~i~~ll 295 (1089)
+++++++++|+||||+.+|+++|+++|+.+++|.+|. ...++...+|++++.++.++ ..++
T Consensus 160 ~~~~~~~~~~i~igD~~~Di~~a~~~g~~~i~v~~g~~~~~~~~~~~~~~~i~~~~~l--~~~l 221 (226)
T PRK13222 160 EKLGLDPEEMLFVGDSRNDIQAARAAGCPSVGVTYGYNYGEPIALSEPDVVIDHFAEL--LPLL 221 (226)
T ss_pred HHcCCChhheEEECCCHHHHHHHHHCCCcEEEECcCCCCccchhhcCCCEEECCHHHH--HHHH
Confidence 9999999999999999999999999999999999986 34556667899999999988 4444
|
|
| >PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-23 Score=216.58 Aligned_cols=186 Identities=27% Similarity=0.463 Sum_probs=156.5
Q ss_pred CCCCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 001380 75 KWGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIY 154 (1089)
Q Consensus 75 ~~~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (1089)
|+.++++|+||+||||+|+...+..++.++++++|...+.+++....+.....+...+....+.. ...+.....+.+.+
T Consensus 1 ~~~~~~~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 79 (188)
T PRK10725 1 MYDRYAGLIFDMDGTILDTEPTHRKAWREVLGRYGLQFDEQAMVALNGSPTWRIAQAIIELNQAD-LDPHALAREKTEAV 79 (188)
T ss_pred CCCcceEEEEcCCCcCccCHHHHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHHHHhCCC-CCHHHHHHHHHHHH
Confidence 35568999999999999999999999999999999988777777788888777766666554432 24444444444444
Q ss_pred HHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHH
Q 001380 155 LDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKI 234 (1089)
Q Consensus 155 ~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~ 234 (1089)
.+.+... ..++|+ .++|..|++. ++++|+||+....++..++++|+. .+||.|++++++...||+|++|..++++
T Consensus 80 ~~~~~~~--~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~~l~-~~fd~i~~~~~~~~~KP~p~~~~~~~~~ 154 (188)
T PRK10725 80 KSMLLDS--VEPLPL-IEVVKAWHGR-RPMAVGTGSESAIAEALLAHLGLR-RYFDAVVAADDVQHHKPAPDTFLRCAQL 154 (188)
T ss_pred HHHHhcc--CCCccH-HHHHHHHHhC-CCEEEEcCCchHHHHHHHHhCCcH-hHceEEEehhhccCCCCChHHHHHHHHH
Confidence 4443332 257786 5899999876 899999999999999999999996 9999999999999999999999999999
Q ss_pred cCCCCCcEEEEcCChhhHHHHHHcCCeEEEEc
Q 001380 235 LNVPTSECIVIEDALAGVQAAKAAQMRCIAVT 266 (1089)
Q Consensus 235 lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~ 266 (1089)
+|++|++||||||+.+|+++|+++|+++|+|.
T Consensus 155 ~~~~~~~~l~igDs~~di~aA~~aG~~~i~~~ 186 (188)
T PRK10725 155 MGVQPTQCVVFEDADFGIQAARAAGMDAVDVR 186 (188)
T ss_pred cCCCHHHeEEEeccHhhHHHHHHCCCEEEeec
Confidence 99999999999999999999999999999984
|
|
| >TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253 | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-23 Score=221.43 Aligned_cols=207 Identities=18% Similarity=0.278 Sum_probs=152.1
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHH---HHHcCCCCCHHhHhhhcCCCHHHH-------HHHHHhhcCCCCCCHHHHH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDV---FAEMGVEVTVEDFLPFMGTGEANF-------LGGVASVKGVKGFDSEAAK 147 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~---~~~~g~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 147 (1089)
|+++|+||+||||+|+...+..++.++ +.++|++.+.+++...+......+ ........... ...+ ..
T Consensus 1 ~~~~viFDlDGTL~ds~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~ 78 (221)
T TIGR02253 1 MIKAIFFDLDDTLIDTSGLAEKARRNAIEVLIEAGLNVDFEEAYEELLKLIKEYGSNYPTHFDYLIRRLWEE-YNPK-LV 78 (221)
T ss_pred CceEEEEeCCCCCcCCCCccCHHHHHHHHHHHHCCCcCCHHHHHHHHHHHHHHhccccCcchHHHHHHHhhh-cCHH-HH
Confidence 378999999999999998887777655 456777776665543222100000 00111111100 0111 11
Q ss_pred HHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHH
Q 001380 148 KRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDI 227 (1089)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~ 227 (1089)
.++...+...... ...++||+.++|+.|+++|++++|+||+....++..++++|+. .+||.++++++.+..||+|++
T Consensus 79 ~~~~~~~~~~~~~--~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~-~~f~~i~~~~~~~~~KP~~~~ 155 (221)
T TIGR02253 79 AAFVYAYHKLKFA--YLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVR-DFFDAVITSEEEGVEKPHPKI 155 (221)
T ss_pred HHHHHHHHHHHHH--hCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChH-HhccEEEEeccCCCCCCCHHH
Confidence 2222222222211 2378999999999999999999999999999999999999997 999999999999999999999
Q ss_pred HHHHHHHcCCCCCcEEEEcCCh-hhHHHHHHcCCeEEEEcCCCC-HHH-HhhcCCcEEecCcccC
Q 001380 228 FLSASKILNVPTSECIVIEDAL-AGVQAAKAAQMRCIAVTTTLS-EER-LKEASPSLIRKEIGSV 289 (1089)
Q Consensus 228 ~~~~l~~lgv~p~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~~-~~~-l~~~~~d~vi~dl~el 289 (1089)
|..+++++|+++++||||||+. +|+.+|+++||++|+|.++.. ..+ .....+++++.++.+|
T Consensus 156 ~~~~~~~~~~~~~~~~~igDs~~~di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~el 220 (221)
T TIGR02253 156 FYAALKRLGVKPEEAVMVGDRLDKDIKGAKNLGMKTVWINQGKSSKMEDDVYPYPDYEISSLREL 220 (221)
T ss_pred HHHHHHHcCCChhhEEEECCChHHHHHHHHHCCCEEEEECCCCCcccccccccCCCeeeCcHHhh
Confidence 9999999999999999999998 999999999999999998763 222 2234688999988775
|
This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). |
| >TIGR01990 bPGM beta-phosphoglucomutase | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.3e-23 Score=214.14 Aligned_cols=183 Identities=33% Similarity=0.458 Sum_probs=152.0
Q ss_pred EEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCC--HHHHHHHHHHHHHHHh
Q 001380 81 AVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFD--SEAAKKRFFEIYLDKY 158 (1089)
Q Consensus 81 ~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 158 (1089)
+|+||+||||+|+...+..++.++++++|++.+.+....+.+.+....+..+....+..... ..+..+.+.+.|.+.+
T Consensus 1 ~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR01990 1 AVIFDLDGVITDTAEYHYLAWKALADELGIPFDEEFNESLKGVSREDSLERILDLGGKKYSEEEKEELAERKNDYYVELL 80 (185)
T ss_pred CeEEcCCCccccChHHHHHHHHHHHHHcCCCCCHHHHHHhcCCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999998877778888888887777776655542211 1223344444454443
Q ss_pred cCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCC
Q 001380 159 AKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVP 238 (1089)
Q Consensus 159 ~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~ 238 (1089)
.......++||+.++|+.|+++|++++|+||+. ..+..++++++. .+|+.++++++....||+|++|..++++++++
T Consensus 81 ~~~~~~~~~pg~~~~L~~L~~~g~~~~i~s~~~--~~~~~l~~~~l~-~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~ 157 (185)
T TIGR01990 81 KELTPADVLPGIKNLLDDLKKNNIKIALASASK--NAPTVLEKLGLI-DYFDAIVDPAEIKKGKPDPEIFLAAAEGLGVS 157 (185)
T ss_pred HhcCCcccCccHHHHHHHHHHCCCeEEEEeCCc--cHHHHHHhcCcH-hhCcEEEehhhcCCCCCChHHHHHHHHHcCCC
Confidence 222223789999999999999999999999864 346789999997 99999999999999999999999999999999
Q ss_pred CCcEEEEcCChhhHHHHHHcCCeEEEEc
Q 001380 239 TSECIVIEDALAGVQAAKAAQMRCIAVT 266 (1089)
Q Consensus 239 p~~~v~VGD~~~Di~aA~~aG~~~i~V~ 266 (1089)
+++||||||+.+|+++|+++||++|+|.
T Consensus 158 ~~~~v~vgD~~~di~aA~~aG~~~i~v~ 185 (185)
T TIGR01990 158 PSECIGIEDAQAGIEAIKAAGMFAVGVG 185 (185)
T ss_pred HHHeEEEecCHHHHHHHHHcCCEEEecC
Confidence 9999999999999999999999999983
|
The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state. |
| >PRK10563 6-phosphogluconate phosphatase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.7e-23 Score=220.29 Aligned_cols=204 Identities=23% Similarity=0.363 Sum_probs=164.1
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhH-hhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDF-LPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLD 156 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1089)
++++|+||+||||+|+...+..++.++++++|+..+.+++ ..+.+.+...++..+...++... ..++....+.+.+..
T Consensus 3 ~~~~viFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (221)
T PRK10563 3 QIEAVFFDCDGTLVDSEVICSRAYVTMFAEFGITLSLEEVFKRFKGVKLYEIIDIISKEHGVTL-AKAELEPVYRAEVAR 81 (221)
T ss_pred CCCEEEECCCCCCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999998775544 45567777778877777666543 344555555554444
Q ss_pred HhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCcc-EEEEcCCccCCCCCHHHHHHHHHHc
Q 001380 157 KYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFD-AIVSADAFENLKPAPDIFLSASKIL 235 (1089)
Q Consensus 157 ~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd-~i~~~~~~~~~KP~~~~~~~~l~~l 235 (1089)
.+... ..++||+.++|+.| +++++|+||+....++..++++++. .+|+ .++++++++..||+|++|..+++++
T Consensus 82 ~~~~~--~~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l~~~~l~-~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~ 155 (221)
T PRK10563 82 LFDSE--LEPIAGANALLESI---TVPMCVVSNGPVSKMQHSLGKTGML-HYFPDKLFSGYDIQRWKPDPALMFHAAEAM 155 (221)
T ss_pred HHHcc--CCcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHHHhcChH-HhCcceEeeHHhcCCCCCChHHHHHHHHHc
Confidence 33322 37899999999999 3999999999999999999999996 9995 6888888889999999999999999
Q ss_pred CCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccC
Q 001380 236 NVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 236 gv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el 289 (1089)
|++|++|+||||+..||++|+++||+++++.++...... ...++.++.++.+|
T Consensus 156 ~~~p~~~l~igDs~~di~aA~~aG~~~i~~~~~~~~~~~-~~~~~~~~~~~~~l 208 (221)
T PRK10563 156 NVNVENCILVDDSSAGAQSGIAAGMEVFYFCADPHNKPI-DHPLVTTFTDLAQL 208 (221)
T ss_pred CCCHHHeEEEeCcHhhHHHHHHCCCEEEEECCCCCCcch-hhhhhHHHHHHHHH
Confidence 999999999999999999999999999999764322222 23445567777776
|
|
| >PLN02779 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=223.80 Aligned_cols=213 Identities=30% Similarity=0.457 Sum_probs=157.7
Q ss_pred CceEEEEecCCcccCCc-hHHHHHHHHHHHHcCC-C--CCHHhHhhh--cCCCHHHHHHHHHhhcCCC----------CC
Q 001380 78 KVSAVLFDMDGVLCNSE-EPSRRAAVDVFAEMGV-E--VTVEDFLPF--MGTGEANFLGGVASVKGVK----------GF 141 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~-~~~~~a~~~~~~~~g~-~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----------~~ 141 (1089)
.+++|||||||||+|+. ..+..++.++++++|+ . .+.+.+..+ .+.+...+...+.. .++. ..
T Consensus 39 ~~k~VIFDlDGTLvDS~~~~~~~a~~~~l~~~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~e 117 (286)
T PLN02779 39 LPEALLFDCDGVLVETERDGHRVAFNDAFKEFGLRPVEWDVELYDELLNIGGGKERMTWYFNE-NGWPTSTIEKAPKDEE 117 (286)
T ss_pred CCcEEEEeCceeEEccccHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHccCCChHHHHHHHHH-cCCCccccccCCccch
Confidence 46999999999999999 9999999999999998 3 233333222 45444444333321 1111 10
Q ss_pred CHHHHHHHHH----HHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCC--CCCccEEEEc
Q 001380 142 DSEAAKKRFF----EIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLP--VSMFDAIVSA 215 (1089)
Q Consensus 142 ~~~~~~~~~~----~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~--~~~fd~i~~~ 215 (1089)
..+.....+. +.|.+.+.. ....++||+.++|+.|+++|++++|+||.....+..+++.++.. ..+|+.+ ++
T Consensus 118 ~~~~~~~~~~~~~~~~y~~~~~~-~~~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~~~~~~~~v-~~ 195 (286)
T PLN02779 118 ERKELVDSLHDRKTELFKELIES-GALPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPERAQGLDVF-AG 195 (286)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh-cCCCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccccccCceEEE-ec
Confidence 1112222222 233332221 12378999999999999999999999999999999998877432 1334545 77
Q ss_pred CCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC-CHHHHhhcCCcEEecCcccCCHHHH
Q 001380 216 DAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL-SEERLKEASPSLIRKEIGSVSLNDI 294 (1089)
Q Consensus 216 ~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~-~~~~l~~~~~d~vi~dl~el~i~~l 294 (1089)
+++...||+|++|..+++++|++|++|+||||+.+|+++|+++||.+|+|.+|. ..+++ ..++++++++.++...++
T Consensus 196 ~~~~~~KP~p~~~~~a~~~~~~~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~l--~~ad~vi~~~~~l~~~~~ 273 (286)
T PLN02779 196 DDVPKKKPDPDIYNLAAETLGVDPSRCVVVEDSVIGLQAAKAAGMRCIVTKSSYTADEDF--SGADAVFDCLGDVPLEDF 273 (286)
T ss_pred cccCCCCCCHHHHHHHHHHhCcChHHEEEEeCCHHhHHHHHHcCCEEEEEccCCcccccc--CCCcEEECChhhcchhhh
Confidence 888889999999999999999999999999999999999999999999999986 44444 479999999999976555
Q ss_pred H
Q 001380 295 L 295 (1089)
Q Consensus 295 l 295 (1089)
-
T Consensus 274 ~ 274 (286)
T PLN02779 274 D 274 (286)
T ss_pred H
Confidence 3
|
|
| >TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=211.13 Aligned_cols=183 Identities=34% Similarity=0.479 Sum_probs=150.5
Q ss_pred ceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCC--CCHHHHHHHHHHHHHH
Q 001380 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKG--FDSEAAKKRFFEIYLD 156 (1089)
Q Consensus 79 ~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 156 (1089)
+++|+||+||||+|+...+..++..+++++|++.+.+....+.+.+....+..+....+... .........+.+.+.+
T Consensus 1 ~~~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR02009 1 YKAVIFDMDGVIVDTAPLHAQAWKHLADKYGIEFDKQYNTSLGGLSREDILRAILKLRKPGLSLETIHQLAERKNELYRE 80 (185)
T ss_pred CCeEEEcCCCcccCChHHHHHHHHHHHHHcCCCCCHHHHHHcCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999877555566777777777777766543221 1112233333344443
Q ss_pred HhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcC
Q 001380 157 KYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILN 236 (1089)
Q Consensus 157 ~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lg 236 (1089)
.+. .....++||+.++|+.|+++|++++|+||+ ..++..++.+|+. .+|+.++++++....||+|++|.++++++|
T Consensus 81 ~~~-~~~~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~-~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~ 156 (185)
T TIGR02009 81 LLR-LTGAEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLT-DYFDAIVDADEVKEGKPHPETFLLAAELLG 156 (185)
T ss_pred HHh-ccCCCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChH-HHCCEeeehhhCCCCCCChHHHHHHHHHcC
Confidence 331 122479999999999999999999999998 6788999999996 999999999999999999999999999999
Q ss_pred CCCCcEEEEcCChhhHHHHHHcCCeEEEE
Q 001380 237 VPTSECIVIEDALAGVQAAKAAQMRCIAV 265 (1089)
Q Consensus 237 v~p~~~v~VGD~~~Di~aA~~aG~~~i~V 265 (1089)
+++++++||||+..|+++|+++|+++|+|
T Consensus 157 ~~~~~~v~IgD~~~di~aA~~~G~~~i~v 185 (185)
T TIGR02009 157 VSPNECVVFEDALAGVQAARAAGMFAVAV 185 (185)
T ss_pred CCHHHeEEEeCcHhhHHHHHHCCCeEeeC
Confidence 99999999999999999999999999875
|
All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509). |
| >cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.4e-23 Score=197.89 Aligned_cols=125 Identities=54% Similarity=1.039 Sum_probs=115.9
Q ss_pred CCCccccCCCCC-ceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHH
Q 001380 431 PEFPAKLDWLNT-APLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNA 509 (1089)
Q Consensus 431 P~f~~~~~~~~g-~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~ 509 (1089)
|++...+.|+++ +++++ ++++||++||+||++||++|+.++|.|++++++|++.++.+|+|+++.++.+++.++++++
T Consensus 1 ~~~~~~~~w~~~~~~v~l-~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~ 79 (126)
T cd03012 1 PEFEGILQWLNTDKPLSL-AQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSA 79 (126)
T ss_pred CCCcchhhhhcCCCccCH-HHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHH
Confidence 556666789988 58999 8899999999999999999999999999999999988999999998766667889999999
Q ss_pred HHHcCCccceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCC
Q 001380 510 VLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEG 556 (1089)
Q Consensus 510 ~~~~~~~~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~ 556 (1089)
+++++++||++.|.+..+++.|++.++|++||||++|++++++.|++
T Consensus 80 ~~~~~~~~p~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~~G~~ 126 (126)
T cd03012 80 VLRYGITYPVANDNDYATWRAYGNQYWPALYLIDPTGNVRHVHFGEG 126 (126)
T ss_pred HHHcCCCCCEEECCchHHHHHhCCCcCCeEEEECCCCcEEEEEecCC
Confidence 99999999999999999999999999999999999999999999874
|
Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3. |
| >PRK09449 dUMP phosphatase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.7e-22 Score=212.49 Aligned_cols=201 Identities=21% Similarity=0.320 Sum_probs=149.6
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHH------------------HHhhcCCC
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGG------------------VASVKGVK 139 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~ 139 (1089)
++|+|+||+||||+|.. ...++.++++++|+..+.+++..+...+. .++.. +....+.
T Consensus 2 ~~k~iiFDlDGTLid~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 77 (224)
T PRK09449 2 KYDWILFDADETLFHFD--AFAGLQRMFSRYGVDFTAEDFQDYQAVNK-PLWVDYQNGAITALQLQHTRFESWAEKLNV- 77 (224)
T ss_pred CccEEEEcCCCchhcch--hhHHHHHHHHHhCCCCcHHHHHHHHHHHH-HHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-
Confidence 58999999999999843 46788889999998876555543311111 01111 1111111
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCcc
Q 001380 140 GFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFE 219 (1089)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~ 219 (1089)
... ++.+.+.+.+... ..++||+.++|+.|+ +|++++|+||+....++..++++|+. .+||.++++++.+
T Consensus 78 --~~~----~~~~~~~~~~~~~--~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~~l~-~~fd~v~~~~~~~ 147 (224)
T PRK09449 78 --TPG----ELNSAFLNAMAEI--CTPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERTGLR-DYFDLLVISEQVG 147 (224)
T ss_pred --CHH----HHHHHHHHHHhhc--CccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhCChH-HHcCEEEEECccC
Confidence 111 2223333333322 368999999999999 57999999999999999999999996 9999999999999
Q ss_pred CCCCCHHHHHHHHHHcCCCC-CcEEEEcCCh-hhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHH
Q 001380 220 NLKPAPDIFLSASKILNVPT-SECIVIEDAL-AGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDIL 295 (1089)
Q Consensus 220 ~~KP~~~~~~~~l~~lgv~p-~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll 295 (1089)
..||+|++|.++++++|+.+ ++|+||||+. +|+++|+++||+++++.++.. .......|++++.++.+| .+++
T Consensus 148 ~~KP~p~~~~~~~~~~~~~~~~~~~~vgD~~~~Di~~A~~aG~~~i~~~~~~~-~~~~~~~~~~~i~~~~el--~~~l 222 (224)
T PRK09449 148 VAKPDVAIFDYALEQMGNPDRSRVLMVGDNLHSDILGGINAGIDTCWLNAHGR-EQPEGIAPTYQVSSLSEL--EQLL 222 (224)
T ss_pred CCCCCHHHHHHHHHHcCCCCcccEEEEcCCcHHHHHHHHHCCCcEEEECCCCC-CCCCCCCCeEEECCHHHH--HHHH
Confidence 99999999999999999854 8999999998 799999999999999986421 222234689999999887 4444
|
|
| >TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254 | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-22 Score=215.20 Aligned_cols=201 Identities=18% Similarity=0.308 Sum_probs=154.3
Q ss_pred ceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCC-------------HHHH----HHHHHhhcCCCCC
Q 001380 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTG-------------EANF----LGGVASVKGVKGF 141 (1089)
Q Consensus 79 ~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~-------------~~~~----~~~~~~~~~~~~~ 141 (1089)
+++|+||+||||+|+......++.++++++|+..+...+..+.... .... +..+....+...
T Consensus 1 ~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (224)
T TIGR02254 1 YKTLLFDLDDTILDFQAAEALALRLLFEDQGIPLTEDMFAQYKEINQGLWRAYEEGKITKDEVVNTRFSALLKEYNTEA- 79 (224)
T ss_pred CCEEEEcCcCcccccchHHHHHHHHHHHHhCCCccHHHHHHHHHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCC-
Confidence 5799999999999999999999999999999876544332221111 1110 111111122110
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCC
Q 001380 142 DSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENL 221 (1089)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~ 221 (1089)
..+ .+.+.+.+.+... ..++||+.++|+.|+++ ++++|+||+....++..++++++. .+||.++++++.+..
T Consensus 80 ~~~----~~~~~~~~~~~~~--~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~~l~-~~fd~i~~~~~~~~~ 151 (224)
T TIGR02254 80 DEA----LLNQKYLRFLEEG--HQLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKSGLF-PFFDDIFVSEDAGIQ 151 (224)
T ss_pred cHH----HHHHHHHHHHhcc--CeeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHCCcH-hhcCEEEEcCccCCC
Confidence 111 2333333333222 37899999999999999 999999999999999999999996 999999999999999
Q ss_pred CCCHHHHHHHHHHc-CCCCCcEEEEcCCh-hhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccC
Q 001380 222 KPAPDIFLSASKIL-NVPTSECIVIEDAL-AGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 222 KP~~~~~~~~l~~l-gv~p~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el 289 (1089)
||+|++|.++++++ |++|++|+||||+. +|+++|+++||.++++.++.... .....+++++.++.+|
T Consensus 152 KP~~~~~~~~~~~~~~~~~~~~v~igD~~~~di~~A~~~G~~~i~~~~~~~~~-~~~~~~~~~~~~~~el 220 (224)
T TIGR02254 152 KPDKEIFNYALERMPKFSKEEVLMIGDSLTADIKGGQNAGLDTCWMNPDMHPN-PDDIIPTYEIRSLEEL 220 (224)
T ss_pred CCCHHHHHHHHHHhcCCCchheEEECCCcHHHHHHHHHCCCcEEEECCCCCCC-CCCCCCceEECCHHHH
Confidence 99999999999999 99999999999998 89999999999999999864222 2345788999998877
|
This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases. |
| >TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=206.79 Aligned_cols=180 Identities=27% Similarity=0.408 Sum_probs=140.2
Q ss_pred eEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhh------------------cCCCHHHHHHHH----HhhcC
Q 001380 80 SAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPF------------------MGTGEANFLGGV----ASVKG 137 (1089)
Q Consensus 80 k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~------------------~~~~~~~~~~~~----~~~~~ 137 (1089)
++|+||+||||+|+...+..++.++++++|++.+.+++... .+.+..+++..+ ....+
T Consensus 1 k~viFDlDGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 80 (203)
T TIGR02252 1 KLITFDAVGTLLALKEPVGEVYCEIARKYGVEVSPDELEQAFRRAFKAMSEAFPNFGFSSGLTPQQWWQKLVRDTFGRAG 80 (203)
T ss_pred CeEEEecCCceeeeCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 57999999999999999999999999999998765443211 134443333222 22222
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCC
Q 001380 138 VKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADA 217 (1089)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~ 217 (1089)
.. ..+. ..++.+.+.+.+.......++||+.++|+.|+++|++++|+||.... +...++.+|+. .+||.++++++
T Consensus 81 ~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l~~~~l~-~~fd~i~~s~~ 155 (203)
T TIGR02252 81 VP--DPES-FEKIFEELYSYFATPEPWQVYPDAIKLLKDLRERGLILGVISNFDSR-LRGLLEALGLL-EYFDFVVTSYE 155 (203)
T ss_pred CC--Cchh-HHHHHHHHHHHhcCCCcceeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHCCcH-HhcceEEeecc
Confidence 21 2222 22333334443433334478999999999999999999999998765 57889999996 99999999999
Q ss_pred ccCCCCCHHHHHHHHHHcCCCCCcEEEEcCCh-hhHHHHHHcCCeEEE
Q 001380 218 FENLKPAPDIFLSASKILNVPTSECIVIEDAL-AGVQAAKAAQMRCIA 264 (1089)
Q Consensus 218 ~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~-~Di~aA~~aG~~~i~ 264 (1089)
.+..||+|++|.++++++|++|++|+||||+. +|+++|+++||++||
T Consensus 156 ~~~~KP~~~~~~~~~~~~~~~~~~~~~IgD~~~~Di~~A~~aG~~~i~ 203 (203)
T TIGR02252 156 VGAEKPDPKIFQEALERAGISPEEALHIGDSLRNDYQGARAAGWRALL 203 (203)
T ss_pred cCCCCCCHHHHHHHHHHcCCChhHEEEECCCchHHHHHHHHcCCeeeC
Confidence 99999999999999999999999999999998 899999999999885
|
Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes. |
| >PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-21 Score=229.44 Aligned_cols=209 Identities=18% Similarity=0.281 Sum_probs=165.9
Q ss_pred CCceEEEEecCCcccCCchHHHHHHHHHHHHcC------CCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 001380 77 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMG------VEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRF 150 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (1089)
+|+++||||+||||+|+...+..+|.+++++++ ...+.+.+....+.+....+..+....+.. ..+.....+
T Consensus 239 ~m~k~vIFDlDGTLiDs~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~~~~~--~~~~~~~~~ 316 (459)
T PRK06698 239 EMLQALIFDMDGTLFQTDKILELSLDDTFDHLRSLQLWDTVTPIDKYREIMGVPLPKVWEALLPDHSLE--IREQTDAYF 316 (459)
T ss_pred HhhhheeEccCCceecchhHHHHHHHHHHHHHhhhcccCCCCCHHHHHHHcCCChHHHHHHHhhhcchh--HHHHHHHHH
Confidence 467999999999999999999999999999974 223456777888888887777665432211 122333334
Q ss_pred HHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHH
Q 001380 151 FEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLS 230 (1089)
Q Consensus 151 ~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~ 230 (1089)
.+.+.+.+.. ....++||+.++|++|+++|++++|+||+..+.++..++.+++. .+|+.+++++++. .||+|++|..
T Consensus 317 ~~~~~~~~~~-~~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~-~~f~~i~~~d~v~-~~~kP~~~~~ 393 (459)
T PRK06698 317 LERLIENIKS-GKGALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLD-QWVTETFSIEQIN-SLNKSDLVKS 393 (459)
T ss_pred HHHhHHHHhh-cCCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcH-hhcceeEecCCCC-CCCCcHHHHH
Confidence 4444333221 12378999999999999999999999999999999999999996 9999999998874 4788899999
Q ss_pred HHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCC-HHHHhhcCCcEEecCcccCCHHHHHh
Q 001380 231 ASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLS-EERLKEASPSLIRKEIGSVSLNDILT 296 (1089)
Q Consensus 231 ~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~-~~~l~~~~~d~vi~dl~el~i~~ll~ 296 (1089)
++++++ +++|+||||+.+|+++|+++||.+|+|.++.. .+++ ..+++++.++.++ .+++.
T Consensus 394 al~~l~--~~~~v~VGDs~~Di~aAk~AG~~~I~v~~~~~~~~~~--~~~d~~i~~l~el--~~~l~ 454 (459)
T PRK06698 394 ILNKYD--IKEAAVVGDRLSDINAAKDNGLIAIGCNFDFAQEDEL--AQADIVIDDLLEL--KGILS 454 (459)
T ss_pred HHHhcC--cceEEEEeCCHHHHHHHHHCCCeEEEEeCCCCccccc--CCCCEEeCCHHHH--HHHHH
Confidence 999875 68999999999999999999999999999863 3333 3689999999887 55553
|
|
| >PLN02811 hydrolase | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-21 Score=205.59 Aligned_cols=203 Identities=23% Similarity=0.312 Sum_probs=161.6
Q ss_pred cCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHHHHhcCCCCC
Q 001380 86 MDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGF-DSEAAKKRFFEIYLDKYAKPNSG 164 (1089)
Q Consensus 86 ~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 164 (1089)
|||||+|+...+..+|.++++++|+..+.+.+..+.+.+....+..+....++... ..+.........+.... .. .
T Consensus 1 ~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~ 77 (220)
T PLN02811 1 MDGLLLDTEKFYTEVQEKILARYGKTFDWSLKAKMMGKKAIEAARIFVEESGLSDSLSPEDFLVEREAMLQDLF-PT--S 77 (220)
T ss_pred CCCcceecHHHHHHHHHHHHHHcCCCCCHHHHHHccCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH-hh--C
Confidence 79999999999999999999999999887777778888887777777665555421 23333333333333222 22 3
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHH-HHHHCCCCCCCccEEEEcC--CccCCCCCHHHHHHHHHHcC---CC
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDA-NLAAAGLPVSMFDAIVSAD--AFENLKPAPDIFLSASKILN---VP 238 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~-~l~~~gl~~~~fd~i~~~~--~~~~~KP~~~~~~~~l~~lg---v~ 238 (1089)
.++||+.++|+.|+++|++++|+||..+..... .++..++. .+|+.+++++ ++...||+|++|..++++++ ++
T Consensus 78 ~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~-~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~ 156 (220)
T PLN02811 78 DLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELF-SLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPVD 156 (220)
T ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHH-hhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCCC
Confidence 789999999999999999999999988765554 34445775 8999999999 88889999999999999997 99
Q ss_pred CCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHH
Q 001380 239 TSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLND 293 (1089)
Q Consensus 239 p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ 293 (1089)
+++|+||||+..|+++|+++||++|+|.++....... .++++++.++.++....
T Consensus 157 ~~~~v~IgDs~~di~aA~~aG~~~i~v~~~~~~~~~~-~~~d~vi~~~~e~~~~~ 210 (220)
T PLN02811 157 PGKVLVFEDAPSGVEAAKNAGMSVVMVPDPRLDKSYC-KGADQVLSSLLDFKPEE 210 (220)
T ss_pred ccceEEEeccHhhHHHHHHCCCeEEEEeCCCCcHhhh-hchhhHhcCHhhCCHHH
Confidence 9999999999999999999999999998876332233 37899999999985444
|
|
| >PRK15412 thiol:disulfide interchange protein DsbE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-21 Score=200.62 Aligned_cols=138 Identities=25% Similarity=0.298 Sum_probs=120.7
Q ss_pred CCCCCCCCCccccCCCC--Cceeeccccc-CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChh
Q 001380 425 KTTPIVPEFPAKLDWLN--TAPLQFRRDL-KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEK 501 (1089)
Q Consensus 425 ~~g~~~P~f~~~~~~~~--g~~~~l~~~~-~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~ 501 (1089)
.+|+++|+|++. +++ |+.+++ +++ +||++||+||++||++|+.++|.|+++++ +++.||+|+. ++
T Consensus 40 ~~g~~~p~f~l~--~~~g~g~~~~~-~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~~~~vi~v~~-----~~ 107 (185)
T PRK15412 40 LIGKPVPKFRLE--SLENPGQFYQA-DVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----QGIRVVGMNY-----KD 107 (185)
T ss_pred hcCCCCCCcCCc--cCCCCCccccH-HHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----cCCEEEEEEC-----CC
Confidence 478999999965 445 466666 554 89999999999999999999999998865 3789999964 56
Q ss_pred cHHHHHHHHHHcCCccce-eecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHHhcc
Q 001380 502 DLEAIRNAVLRYGISHPV-VNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFYGK 574 (1089)
Q Consensus 502 ~~~~~~~~~~~~~~~~~v-~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~~~~ 574 (1089)
+.+++++|+++++++|++ +.|.+..+++.|+|.++|++|+||++|+|++++.|..+.+.+++.|+.+++....
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~~~~ 181 (185)
T PRK15412 108 DRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEKYSK 181 (185)
T ss_pred CHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHHHHHh
Confidence 778899999999999984 7899999999999999999999999999999999999999999999999987653
|
|
| >PLN02399 phospholipid hydroperoxide glutathione peroxidase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-21 Score=205.29 Aligned_cols=145 Identities=17% Similarity=0.221 Sum_probs=122.2
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCC--Ch
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFD--NE 500 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~--~~ 500 (1089)
....|+.+|+|+++ +++|+.+++ ++++||++||+||++||++|+.++|.|++++++|+++|+.||+|+++.+. ..
T Consensus 72 ~~~~g~~aPdF~l~--d~~G~~vsL-sd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~ 148 (236)
T PLN02399 72 RAATEKSVHDFTVK--DIDGKDVAL-SKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEP 148 (236)
T ss_pred chhcCCCCCceEEE--CCCCCEEeH-HHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCC
Confidence 34578999999964 569999999 99999999999999999999999999999999999999999999986543 23
Q ss_pred hcHHHHHHHH-HHcCCccceee--cCCh-hHHHHhC-------------CCceeEEEEECCCCcEEEEecCCCchhhHHH
Q 001380 501 KDLEAIRNAV-LRYGISHPVVN--DGDM-NLWRELG-------------VNSWPTFAVVGPNGKLLAQLAGEGHRKDLDD 563 (1089)
Q Consensus 501 ~~~~~~~~~~-~~~~~~~~v~~--d~~~-~l~~~~~-------------v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~ 563 (1089)
++.+++++|+ ++++++||++. |.++ .++..|+ +.+.|++||||++|+|+.++.|..+.+++++
T Consensus 149 ~s~~ei~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~ 228 (236)
T PLN02399 149 GSNPEIKQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEK 228 (236)
T ss_pred CCHHHHHHHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHH
Confidence 5678899998 68999999985 4433 3333332 3557999999999999999999999999999
Q ss_pred HHHHHHH
Q 001380 564 LVEAALL 570 (1089)
Q Consensus 564 ~l~~~l~ 570 (1089)
.|+++|+
T Consensus 229 ~I~~lL~ 235 (236)
T PLN02399 229 DIQKLLA 235 (236)
T ss_pred HHHHHhc
Confidence 9988874
|
|
| >TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-21 Score=202.85 Aligned_cols=179 Identities=25% Similarity=0.364 Sum_probs=132.1
Q ss_pred ceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCH-------Hh-H-hhhcCC--CH----HHHHHHHHhhcCCCCCCH
Q 001380 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTV-------ED-F-LPFMGT--GE----ANFLGGVASVKGVKGFDS 143 (1089)
Q Consensus 79 ~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~-------~~-~-~~~~~~--~~----~~~~~~~~~~~~~~~~~~ 143 (1089)
+|+|+||+||||+|+... ..++.+++...+..... +. . ....+. .. ...+..+....+... .
T Consensus 1 ik~viFD~dgTLiD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~-~- 77 (198)
T TIGR01428 1 IKALVFDVYGTLFDVHSV-VERFAELYGGRGEALSQLWRQKQLEYSWLRTLMGPYADFWDLTREALRYLLGRLGLED-D- 77 (198)
T ss_pred CcEEEEeCCCcCccHHHH-HHHHHHHhCchHHHHHHHHHHHHHHHHHHHHccCCCcCHHHHHHHHHHHHHHHcCCCC-C-
Confidence 478999999999998864 44444444332221110 00 0 011111 11 122333444444431 1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCC
Q 001380 144 EAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKP 223 (1089)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP 223 (1089)
....+.+.+.+ .. ..++||+.++|++|+++|++++|+||+....++..++++|+. .+||.++++++++..||
T Consensus 78 ~~~~~~~~~~~----~~---~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~-~~fd~i~~s~~~~~~KP 149 (198)
T TIGR01428 78 ESAADRLAEAY----LR---LPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLD-DPFDAVLSADAVRAYKP 149 (198)
T ss_pred HHHHHHHHHHH----hc---CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCCh-hhhheeEehhhcCCCCC
Confidence 22223333332 22 268999999999999999999999999999999999999996 99999999999999999
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCC
Q 001380 224 APDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTT 268 (1089)
Q Consensus 224 ~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g 268 (1089)
+|++|.++++++|++|++|+||||+.+|+++|+++||.+|+|.++
T Consensus 150 ~~~~~~~~~~~~~~~p~~~~~vgD~~~Di~~A~~~G~~~i~v~r~ 194 (198)
T TIGR01428 150 APQVYQLALEALGVPPDEVLFVASNPWDLGGAKKFGFKTAWVNRP 194 (198)
T ss_pred CHHHHHHHHHHhCCChhhEEEEeCCHHHHHHHHHCCCcEEEecCC
Confidence 999999999999999999999999999999999999999999875
|
Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related. |
| >PRK14988 GMP/IMP nucleotidase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-21 Score=205.48 Aligned_cols=106 Identities=17% Similarity=0.259 Sum_probs=99.6
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEE
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECI 243 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v 243 (1089)
..++||+.++|+.|+++|++++|+||+.++.++..++.+|+. .+|+.++++++++..||+|++|..+++++|++|++|+
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~-~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l 170 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLD-AHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAERTL 170 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcH-HHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHHEE
Confidence 378999999999999999999999999999999999999996 9999999999999999999999999999999999999
Q ss_pred EEcCChhhHHHHHHcCCeE-EEEcCCCC
Q 001380 244 VIEDALAGVQAAKAAQMRC-IAVTTTLS 270 (1089)
Q Consensus 244 ~VGD~~~Di~aA~~aG~~~-i~V~~g~~ 270 (1089)
||||+..|+++|+++||++ ++|..+.+
T Consensus 171 ~igDs~~di~aA~~aG~~~~~~v~~~~~ 198 (224)
T PRK14988 171 FIDDSEPILDAAAQFGIRYCLGVTNPDS 198 (224)
T ss_pred EEcCCHHHHHHHHHcCCeEEEEEeCCCC
Confidence 9999999999999999985 66877653
|
|
| >PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-21 Score=194.44 Aligned_cols=126 Identities=37% Similarity=0.616 Sum_probs=113.2
Q ss_pred CCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecC-CCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcH
Q 001380 425 KTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTY-CCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDL 503 (1089)
Q Consensus 425 ~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~-wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~ 503 (1089)
++|+++|+|++++.+.+|+++++ ++++||++||+||++ ||++|+.++|.|++++++|+++++.+|+|+. +++.
T Consensus 1 k~G~~~P~~~~~~~~~~g~~~~l-~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~-----~~~~ 74 (146)
T PF08534_consen 1 KVGDKAPDFSLKDLDLDGKPVSL-SDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSS-----DDDP 74 (146)
T ss_dssp STTSB--CCEEEEEETTSEEEEG-GGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEE-----SSSH
T ss_pred CCCCCCCCeEEEeecCCCCEecH-HHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecc-----cCCH
Confidence 47999999997654579999999 889999999999999 9999999999999999999999999999976 2333
Q ss_pred HHHHHHHHHcCCccceeecCChhHHHHhCCC---------ceeEEEEECCCCcEEEEecCCCc
Q 001380 504 EAIRNAVLRYGISHPVVNDGDMNLWRELGVN---------SWPTFAVVGPNGKLLAQLAGEGH 557 (1089)
Q Consensus 504 ~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~---------~~Pt~~lid~~G~i~~~~~G~~~ 557 (1089)
. +++++++++++|+++.|.+..+++.|++. ++|+++|||++|+|++.+.|...
T Consensus 75 ~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 75 P-VREFLKKYGINFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp H-HHHHHHHTTTTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred H-HHHHHHhhCCCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 3 99999999999999999999999999998 99999999999999999998876
|
Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A .... |
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.1e-20 Score=217.91 Aligned_cols=301 Identities=20% Similarity=0.290 Sum_probs=229.1
Q ss_pred CCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC
Q 001380 598 SPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE 677 (1089)
Q Consensus 598 ~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~ 677 (1089)
-.|..|..+|..+ +|.|||.|. +-|.++.++|++...+.-.. +...+-.-||++|-...|||+|+.
T Consensus 362 ~~L~aPvala~a~-DGSl~VGDf--NyIRRI~~dg~v~tIl~L~~-----------t~~sh~Yy~AvsPvdgtlyvSdp~ 427 (1899)
T KOG4659|consen 362 ISLFAPVALAYAP-DGSLIVGDF--NYIRRISQDGQVSTILTLGL-----------TDTSHSYYIAVSPVDGTLYVSDPL 427 (1899)
T ss_pred ceeeceeeEEEcC-CCcEEEccc--hheeeecCCCceEEEEEecC-----------CCccceeEEEecCcCceEEecCCC
Confidence 3577899999997 999999998 67999999999877554431 123456889999976669999999
Q ss_pred CCEEEEEECC-----CCeEEEEecCCCCCCC----CCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCC
Q 001380 678 NHALREIDFV-----NDTVRTLAGNGTKGSD----YQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDG 748 (1089)
Q Consensus 678 n~~I~~~d~~-----~g~v~~~ag~g~~~~~----~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g 748 (1089)
.++|+++..- .+.-..++|.|.+.-+ +.+|+.+...+|.+|.||++|..| .||++|. .+|+++| .+|
T Consensus 428 s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g-~lYfaD~--t~IR~iD-~~g 503 (1899)
T KOG4659|consen 428 SKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMG-NLYFADG--TRIRVID-TTG 503 (1899)
T ss_pred cceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCC-cEEEecc--cEEEEec-cCc
Confidence 9999988532 2456789999987443 345778888999999999999987 9999997 6788998 468
Q ss_pred eEEEEeCCCccccC-----CCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccc
Q 001380 749 VTRAFSGDGYERNL-----NGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFK 823 (1089)
Q Consensus 749 ~~~~~~g~g~~~~~-----~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~ 823 (1089)
.++++.|+...... ....-.+-.+.||..||++|..+.|||.| ++-|.+++.. +.+++++ |.|+.++--..
T Consensus 504 iIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld--~nvvlrit~~-~rV~Ii~-GrP~hC~~a~~ 579 (1899)
T KOG4659|consen 504 IISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLD--TNVVLRITVV-HRVRIIL-GRPTHCDLANA 579 (1899)
T ss_pred eEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEee--cceEEEEccC-ccEEEEc-CCccccccCCC
Confidence 88888876533211 11112345688999999999888999998 5789999876 6676554 45665553221
Q ss_pred cCCCCCccccccccCceEEEEccCCcEEEEeCCCCE---EEEEeCCCCeEEEEeccCCC------C------CCCCcccc
Q 001380 824 FGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHK---IKKLDPASNRVSTLAGIGKA------G------FKDGAALA 888 (1089)
Q Consensus 824 ~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~---I~~~d~~~~~v~t~~g~g~~------g------~~~g~~~~ 888 (1089)
-......+.+..+-.|.+|++.++|.|||+++...| |+++..+ |++..++|..+. + ..+..+++
T Consensus 580 t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~td-g~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~ 658 (1899)
T KOG4659|consen 580 TSSASKLADHRTLLIQRDIAVGTDGALYVAESDGRRINRVRKLSTD-GTISILAGAKSPCSCDVAACCDCFSLRDVAATQ 658 (1899)
T ss_pred chhhhhhhhhhhhhhhhceeecCCceEEEEeccchhhhheEEeccC-ceEEEecCCCCCCCcccccCCccccccchhhhc
Confidence 112224566778888999999999999999998655 5566654 588888876432 1 11344789
Q ss_pred cccCCCceEEEccCCcEEEEECCCCEEEEEeCC
Q 001380 889 AQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLN 921 (1089)
Q Consensus 889 ~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~ 921 (1089)
+.|+.|..+||.|+|.+||||.+|-||+.+..+
T Consensus 659 A~lnsp~alaVsPdg~v~IAD~gN~rIr~Vs~~ 691 (1899)
T KOG4659|consen 659 AKLNSPYALAVSPDGDVIIADSGNSRIRKVSAR 691 (1899)
T ss_pred cccCCcceEEECCCCcEEEecCCchhhhhhhhc
Confidence 999999999999999999999999999987654
|
|
| >PRK10748 flavin mononucleotide phosphatase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7e-21 Score=205.76 Aligned_cols=204 Identities=17% Similarity=0.188 Sum_probs=142.0
Q ss_pred CCCceEEEEecCCcccCCchHHHHHHHHHHHHcCCC------CCHHhHh---hhcCC-------CH----HHHHHHHHhh
Q 001380 76 WGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVE------VTVEDFL---PFMGT-------GE----ANFLGGVASV 135 (1089)
Q Consensus 76 ~~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~------~~~~~~~---~~~~~-------~~----~~~~~~~~~~ 135 (1089)
+.++++|+||+||||+|+...+..++.++++.++.. +....+. ..... .. ......+...
T Consensus 7 ~~~~k~iiFDlDGTL~D~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 86 (238)
T PRK10748 7 LGRISALTFDLDDTLYDNRPVILRTEQEALAFVQNYHPALRSFQNEDLQRLRQALREAEPEIYHDVTRWRWRAIEQAMLD 86 (238)
T ss_pred CCCceeEEEcCcccccCChHHHHHHHHHHHHHHHHhCcchhhCCHHHHHHHHHHHHHhCchhhCcHHHHHHHHHHHHHHH
Confidence 345799999999999999999898888877665211 1111111 10000 00 0112223333
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEc
Q 001380 136 KGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSA 215 (1089)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~ 215 (1089)
.+......+...+...+.+.... . ...++||+.++|+.|+++ ++++|+||++.. ++.+|+. .+||.++++
T Consensus 87 ~g~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-----~~~~gl~-~~fd~i~~~ 156 (238)
T PRK10748 87 AGLSAEEASAGADAAMINFAKWR-S--RIDVPQATHDTLKQLAKK-WPLVAITNGNAQ-----PELFGLG-DYFEFVLRA 156 (238)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHh-h--cCCCCccHHHHHHHHHcC-CCEEEEECCCch-----HHHCCcH-HhhceeEec
Confidence 44321111111122222222221 1 137899999999999986 999999998765 4788996 999999999
Q ss_pred CCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCCh-hhHHHHHHcCCeEEEEcCCCCH---HHHhhcCCcEEecCcccC
Q 001380 216 DAFENLKPAPDIFLSASKILNVPTSECIVIEDAL-AGVQAAKAAQMRCIAVTTTLSE---ERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 216 ~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~~~---~~l~~~~~d~vi~dl~el 289 (1089)
++.+..||+|++|..+++++|++|++|+||||+. .|+.+|+++||++++|..+... ..-....|++.+.++.+|
T Consensus 157 ~~~~~~KP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~i~v~~~~~~~~~~~~~~~~p~~~i~~l~el 234 (238)
T PRK10748 157 GPHGRSKPFSDMYHLAAEKLNVPIGEILHVGDDLTTDVAGAIRCGMQACWINPENGDLMQTWDSRLLPHIEISRLASL 234 (238)
T ss_pred ccCCcCCCcHHHHHHHHHHcCCChhHEEEEcCCcHHHHHHHHHCCCeEEEEcCCCccccccccccCCCCEEECCHHHH
Confidence 9999999999999999999999999999999995 9999999999999999885421 111224588888888776
|
|
| >PLN02412 probable glutathione peroxidase | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.6e-21 Score=193.76 Aligned_cols=143 Identities=17% Similarity=0.209 Sum_probs=120.1
Q ss_pred CCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCC--hhcH
Q 001380 426 TTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDN--EKDL 503 (1089)
Q Consensus 426 ~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~--~~~~ 503 (1089)
..+.+|+|+++ +++|+.+++ ++++||++||+||++||++|+.++|.|++++++|+++|+.||||+++.+.. .++.
T Consensus 5 ~~~~~pdf~l~--d~~G~~v~l-~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~ 81 (167)
T PLN02412 5 SPKSIYDFTVK--DIGGNDVSL-NQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSN 81 (167)
T ss_pred cCCCCCceEEE--CCCCCEEeH-HHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCH
Confidence 34779999964 569999999 899999999999999999999999999999999999999999999865432 2455
Q ss_pred HHH-HHHHHHcCCccceeec--CC-hhHHHHhC-------------CCceeEEEEECCCCcEEEEecCCCchhhHHHHHH
Q 001380 504 EAI-RNAVLRYGISHPVVND--GD-MNLWRELG-------------VNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVE 566 (1089)
Q Consensus 504 ~~~-~~~~~~~~~~~~v~~d--~~-~~l~~~~~-------------v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~ 566 (1089)
+++ +.++++++++||++.| .+ ...+..|+ +.+.|++||||++|+++.++.|..+.++++..|+
T Consensus 82 ~~~~~~~~~~~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~ 161 (167)
T PLN02412 82 EEIQQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQ 161 (167)
T ss_pred HHHHHHHHHccCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHH
Confidence 555 5557999999999863 44 25555553 6678999999999999999999999999999999
Q ss_pred HHHHH
Q 001380 567 AALLF 571 (1089)
Q Consensus 567 ~~l~~ 571 (1089)
.++++
T Consensus 162 ~~l~~ 166 (167)
T PLN02412 162 NLLGQ 166 (167)
T ss_pred HHHhh
Confidence 88865
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.9e-19 Score=192.49 Aligned_cols=230 Identities=24% Similarity=0.374 Sum_probs=175.3
Q ss_pred CCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEE
Q 001380 602 FPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHAL 681 (1089)
Q Consensus 602 ~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I 681 (1089)
+|.++++++.+++||++|..+++|+++++++.....+... .|.|++++..++.+||++. +.+
T Consensus 1 l~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~----------------~~~G~~~~~~~g~l~v~~~--~~~ 62 (246)
T PF08450_consen 1 LGEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLP----------------GPNGMAFDRPDGRLYVADS--GGI 62 (246)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESS----------------SEEEEEEECTTSEEEEEET--TCE
T ss_pred CCcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecC----------------CCceEEEEccCCEEEEEEc--Cce
Confidence 3678999988999999999999999999998877665443 4899999943355999995 445
Q ss_pred EEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC--------cEEEEEECCCCeEEEE
Q 001380 682 REIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ--------HQIWEHSTVDGVTRAF 753 (1089)
Q Consensus 682 ~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~--------~~I~~~~~~~g~~~~~ 753 (1089)
..+|+.++.++++...-. ....+..|++++++++| .||+++.+. ++|+++++. +.+..+
T Consensus 63 ~~~d~~~g~~~~~~~~~~-----------~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 63 AVVDPDTGKVTVLADLPD-----------GGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp EEEETTTTEEEEEEEEET-----------TCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred EEEecCCCcEEEEeeccC-----------CCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 566999999998875310 01236789999999998 799999765 679999998 777666
Q ss_pred eCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCe-----EEEecCCCCCCCCccccCCCC
Q 001380 754 SGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGS-----RLLAGGDPIFPDNLFKFGDRD 828 (1089)
Q Consensus 754 ~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~-----~~~~g~~~~~~~~l~~~g~~d 828 (1089)
. ..+..|+||+++++++.|||+|+.+++|++++.+.... +.+.. +...
T Consensus 130 ~---------------~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~-----------~~~~- 182 (246)
T PF08450_consen 130 A---------------DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFID-----------FPGG- 182 (246)
T ss_dssp E---------------EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE------------SSS-
T ss_pred e---------------cCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEE-----------cCCC-
Confidence 5 34678999999999999999999999999999864322 11211 1111
Q ss_pred CccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEc-cC-CcEE
Q 001380 829 GMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEA-QN-GNLF 906 (1089)
Q Consensus 829 g~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd-~~-G~ly 906 (1089)
...|.|+++|.+|+||||+..+++|.++|+++..+..+.- ....|+.+|+. ++ ++||
T Consensus 183 -------~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~--------------p~~~~t~~~fgg~~~~~L~ 241 (246)
T PF08450_consen 183 -------PGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIEL--------------PVPRPTNCAFGGPDGKTLY 241 (246)
T ss_dssp -------SCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE---------------SSSSEEEEEEESTTSSEEE
T ss_pred -------CcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcC--------------CCCCEEEEEEECCCCCEEE
Confidence 1359999999999999999999999999999766666653 23469999995 33 4699
Q ss_pred EEEC
Q 001380 907 IADT 910 (1089)
Q Consensus 907 Vad~ 910 (1089)
|+..
T Consensus 242 vTta 245 (246)
T PF08450_consen 242 VTTA 245 (246)
T ss_dssp EEEB
T ss_pred EEeC
Confidence 9863
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PTZ00056 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-20 Score=196.54 Aligned_cols=150 Identities=13% Similarity=0.140 Sum_probs=123.5
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCC--h
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDN--E 500 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~--~ 500 (1089)
....+..+|+|++ .+++|+.+++ ++++||+|||+|||+||++|+.++|.|++++++|+++|+.||+|+++.|.. .
T Consensus 12 ~~~~~~~~pdf~l--~d~~G~~vsL-~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~ 88 (199)
T PTZ00056 12 KDELRKSIYDYTV--KTLEGTTVPM-SSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEF 88 (199)
T ss_pred chhcCCCCCceEE--ECCCCCEEeH-HHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCC
Confidence 3456789999995 4669999999 899999999999999999999999999999999999999999998765422 2
Q ss_pred hcHHHHHHHHHHcCCccceeecC------ChhHH--------HHhCCC----ce---eEEEEECCCCcEEEEecCCCchh
Q 001380 501 KDLEAIRNAVLRYGISHPVVNDG------DMNLW--------RELGVN----SW---PTFAVVGPNGKLLAQLAGEGHRK 559 (1089)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~v~~d~------~~~l~--------~~~~v~----~~---Pt~~lid~~G~i~~~~~G~~~~~ 559 (1089)
++.+++++|+++++++||++.|. ...++ ..|++. .+ |++||||++|+|+.++.|..+.+
T Consensus 89 d~~e~~~~f~~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~ 168 (199)
T PTZ00056 89 PNTKDIRKFNDKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPL 168 (199)
T ss_pred CCHHHHHHHHHHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHH
Confidence 57889999999999999998652 22333 234332 22 47999999999999999999999
Q ss_pred hHHHHHHHHHHHhccc
Q 001380 560 DLDDLVEAALLFYGKK 575 (1089)
Q Consensus 560 ~l~~~l~~~l~~~~~~ 575 (1089)
.+++.|+.++++-.-+
T Consensus 169 ~l~~~I~~ll~~~~~~ 184 (199)
T PTZ00056 169 ELEKKIAELLGVKDYQ 184 (199)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988864433
|
|
| >PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.9e-21 Score=195.18 Aligned_cols=175 Identities=29% Similarity=0.503 Sum_probs=146.8
Q ss_pred EEEecCCcccCCchHHHHHHHH-HHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhcC
Q 001380 82 VLFDMDGVLCNSEEPSRRAAVD-VFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDKYAK 160 (1089)
Q Consensus 82 ViFD~DGTL~d~~~~~~~a~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (1089)
|+||+||||+++...+..++.. ++++++...+.+++....+.....++..+....+.. .....+.+.+... ..
T Consensus 1 iifD~dgtL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---~~ 74 (176)
T PF13419_consen 1 IIFDLDGTLVDTDPAIFRALQRLALEEFGLEISAEELRELFGKSYEEALERLLERFGID---PEEIQELFREYNL---ES 74 (176)
T ss_dssp EEEESBTTTEEHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH---HG
T ss_pred cEEECCCCcEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHhhhccchh---HHHHHHHhhhhhh---hh
Confidence 7999999999999988888887 477888887777777777777777777666654321 2222222222211 11
Q ss_pred CCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCC
Q 001380 161 PNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTS 240 (1089)
Q Consensus 161 ~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~ 240 (1089)
...++||+.++|+.|+++|++++++||+....++..++++|+. .+|+.++++++.+..||++++|+++++++|++|+
T Consensus 75 --~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~-~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~ 151 (176)
T PF13419_consen 75 --KLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLD-DYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPE 151 (176)
T ss_dssp --GEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG-GGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGG
T ss_pred --ccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccc-cccccccccchhhhhhhHHHHHHHHHHHcCCCcc
Confidence 2378999999999999999999999999999999999999996 9999999999999999999999999999999999
Q ss_pred cEEEEcCChhhHHHHHHcCCeEEEE
Q 001380 241 ECIVIEDALAGVQAAKAAQMRCIAV 265 (1089)
Q Consensus 241 ~~v~VGD~~~Di~aA~~aG~~~i~V 265 (1089)
+|+||||+..|+++|+++||.+|+|
T Consensus 152 ~~~~vgD~~~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 152 EILFVGDSPSDVEAAKEAGIKTIWV 176 (176)
T ss_dssp GEEEEESSHHHHHHHHHTTSEEEEE
T ss_pred eEEEEeCCHHHHHHHHHcCCeEEeC
Confidence 9999999999999999999999987
|
... |
| >KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-19 Score=187.23 Aligned_cols=211 Identities=32% Similarity=0.386 Sum_probs=181.0
Q ss_pred CCCCCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 001380 74 SKWGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEI 153 (1089)
Q Consensus 74 ~~~~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (1089)
.++..+.+++||+||||+|++..+.+++.+++.++|..++++.....+|....+..+.+......+ ...++...+..+.
T Consensus 5 ~~~~~~~~~lfD~dG~lvdte~~y~~~~~~~~~~ygk~~~~~~~~~~mG~~~~eaa~~~~~~~~dp-~s~ee~~~e~~~~ 83 (222)
T KOG2914|consen 5 SLSLKVSACLFDMDGTLVDTEDLYTEAWQELLDRYGKPYPWDVKVKSMGKRTSEAARLFVKKLPDP-VSREEFNKEEEEI 83 (222)
T ss_pred ccccceeeEEEecCCcEEecHHHHHHHHHHHHHHcCCCChHHHHHHHcCCCHHHHHHHHHhhcCCC-CCHHHHHHHHHHH
Confidence 345568999999999999999999999999999999999999999999999999998888544443 3777777777777
Q ss_pred HHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEE--cCCccCCCCCHHHHHHH
Q 001380 154 YLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVS--ADAFENLKPAPDIFLSA 231 (1089)
Q Consensus 154 ~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~--~~~~~~~KP~~~~~~~~ 231 (1089)
..+.+... .++||+.+|+..|+.+|++++++|+.++...+..+++++--...|+.++. ..++..+||+|++|..+
T Consensus 84 ~~~~~~~~---~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A 160 (222)
T KOG2914|consen 84 LDRLFMNS---ILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKA 160 (222)
T ss_pred HHHhcccc---ccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcCCCeecCCccccCCCCCchHHHHH
Confidence 76666555 68999999999999999999999999999999999998722577888877 66788999999999999
Q ss_pred HHHcCCCC-CcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccC
Q 001380 232 SKILNVPT-SECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 232 l~~lgv~p-~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el 289 (1089)
++.+|..+ +.||+++|++..+++|++|||.+|+|... .........++.+++++.+.
T Consensus 161 ~~~l~~~~~~k~lVfeds~~Gv~aa~aagm~vi~v~~~-~~~~~~~~~~~~~~~~~~~~ 218 (222)
T KOG2914|consen 161 AKRLGVPPPSKCLVFEDSPVGVQAAKAAGMQVVGVATP-DLSNLFSAGATLILESLEDF 218 (222)
T ss_pred HHhcCCCCccceEEECCCHHHHHHHHhcCCeEEEecCC-Ccchhhhhccceeccccccc
Confidence 99999998 99999999999999999999999999883 33444455777887777665
|
|
| >cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-20 Score=189.32 Aligned_cols=131 Identities=21% Similarity=0.321 Sum_probs=109.8
Q ss_pred CCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCC--ChhcHHHHH
Q 001380 430 VPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFD--NEKDLEAIR 507 (1089)
Q Consensus 430 ~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~--~~~~~~~~~ 507 (1089)
+|+|++ .+++|+++++ ++++||+|||+||++||+ |+.++|.|++++++|+++++.+|+|+++.+. ..++.+.++
T Consensus 2 ~~~f~l--~d~~G~~v~l-~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~ 77 (152)
T cd00340 2 IYDFSV--KDIDGEPVSL-SKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIK 77 (152)
T ss_pred cceeEE--ECCCCCEEeH-HHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHH
Confidence 688885 4569999999 999999999999999999 9999999999999999889999999876542 125678999
Q ss_pred HHHHH-cCCccceeecC--Chh-HHHHhC--CCcee-----------EEEEECCCCcEEEEecCCCchhhHHHH
Q 001380 508 NAVLR-YGISHPVVNDG--DMN-LWRELG--VNSWP-----------TFAVVGPNGKLLAQLAGEGHRKDLDDL 564 (1089)
Q Consensus 508 ~~~~~-~~~~~~v~~d~--~~~-l~~~~~--v~~~P-----------t~~lid~~G~i~~~~~G~~~~~~l~~~ 564 (1089)
+|+++ ++++||++.|. ++. ..+.|+ +..+| ++||||++|+|++++.|..+.+.+++.
T Consensus 78 ~f~~~~~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 78 EFCETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred HHHHHhcCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 99997 89999999763 333 455666 45666 899999999999999999887766543
|
GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes. |
| >TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548 | Back alignment and domain information |
|---|
Probab=99.83 E-value=9e-20 Score=191.57 Aligned_cols=177 Identities=22% Similarity=0.294 Sum_probs=135.6
Q ss_pred eEEEEecCCcccCCchHHHHHHHHHHHHcC-CCCCHHhHhhhcCCCH---------HHHHHHHHhhcC---CCCCCHHHH
Q 001380 80 SAVLFDMDGVLCNSEEPSRRAAVDVFAEMG-VEVTVEDFLPFMGTGE---------ANFLGGVASVKG---VKGFDSEAA 146 (1089)
Q Consensus 80 k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g-~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~---~~~~~~~~~ 146 (1089)
++|+|||||||+|+...+..++.++++++| ...+.+++..+.+.+. ..+...+..... ......+..
T Consensus 1 ~~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (197)
T TIGR01548 1 QALVLDMDGVMADVSQSYRRAIIDTVEHFGGVSVTHADIDHTKLAGNANNDWQLTHRLVVDGLNSASSERVRDAPTLEAV 80 (197)
T ss_pred CceEEecCceEEechHHHHHHHHHHHHHHcCCCCCHHHHHHHHHccCccCchHHHHHHHHHhhhcccchhccCCccHHHH
Confidence 369999999999999999999999999997 5677777777766432 112221111110 112233444
Q ss_pred HHHHHHHHHHHhcC-------CCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCcc
Q 001380 147 KKRFFEIYLDKYAK-------PNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFE 219 (1089)
Q Consensus 147 ~~~~~~~~~~~~~~-------~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~ 219 (1089)
.+.+.+.|...... .....+.+++.++|+.|+++|++++|+||+.+..++..++.+|+. .+|+.++++++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~-~~f~~~~~~~~~~ 159 (197)
T TIGR01548 81 TAQFQALYQGVGYYRDLATLGLIEDETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLE-ILFPVQIWMEDCP 159 (197)
T ss_pred HHHHHHHHcCCcccccccchhhhccccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCch-hhCCEEEeecCCC
Confidence 44444444321100 012245567799999999999999999999999999999999997 9999999999887
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHc
Q 001380 220 NLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAA 258 (1089)
Q Consensus 220 ~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~a 258 (1089)
. ||+|++|..+++++|+++++|+||||+.+|+++|+++
T Consensus 160 ~-KP~p~~~~~~~~~~~~~~~~~i~vGD~~~Di~aA~~a 197 (197)
T TIGR01548 160 P-KPNPEPLILAAKALGVEACHAAMVGDTVDDIITGRKA 197 (197)
T ss_pred C-CcCHHHHHHHHHHhCcCcccEEEEeCCHHHHHHHHhC
Confidence 7 9999999999999999999999999999999999875
|
All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's. |
| >PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.3e-20 Score=213.96 Aligned_cols=153 Identities=18% Similarity=0.287 Sum_probs=133.1
Q ss_pred CCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcH
Q 001380 424 RKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDL 503 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~ 503 (1089)
...++.+|+|++ .+++|+.+.+ + +||+|||+|||+||++|+.++|.|+++++++++.++.||+|+++..+.+++.
T Consensus 32 ~~~~~~lP~f~l--~D~dG~~v~l-s--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~ 106 (521)
T PRK14018 32 ATVPHTLSTLKT--ADNRPASVYL-K--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKD 106 (521)
T ss_pred ccccCCCCCeEe--ecCCCceeec-c--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccH
Confidence 346788999985 5679999988 4 8999999999999999999999999999999877899999998766667778
Q ss_pred HHHHHHHHHcCC-ccceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHH--------HHHHHhcc
Q 001380 504 EAIRNAVLRYGI-SHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVE--------AALLFYGK 574 (1089)
Q Consensus 504 ~~~~~~~~~~~~-~~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~--------~~l~~~~~ 574 (1089)
++++++++..++ .+|++.|.+..+++.|+|.++|+++|||++|+++.++.|....+++.++|+ -+..+++.
T Consensus 107 ~~~~~~~~~~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~~~~~~~~~~~~~~~ 186 (521)
T PRK14018 107 GDFQKWYAGLDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNPNADLGSLKHSYYKP 186 (521)
T ss_pred HHHHHHHHhCCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHhhhhhHHhhhhhccc
Confidence 888899888776 479999999999999999999999999999999999999999999999998 44556666
Q ss_pred cccccCC
Q 001380 575 KKLLDNT 581 (1089)
Q Consensus 575 ~~~l~~~ 581 (1089)
+|++.+.
T Consensus 187 ~~q~~d~ 193 (521)
T PRK14018 187 DGQKKDS 193 (521)
T ss_pred cCCcccc
Confidence 6664443
|
|
| >TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.6e-20 Score=186.81 Aligned_cols=135 Identities=24% Similarity=0.313 Sum_probs=116.6
Q ss_pred CCCCCCCCCCccccCCCCCc--eeeccccc-CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCCh
Q 001380 424 RKTTPIVPEFPAKLDWLNTA--PLQFRRDL-KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNE 500 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~--~~~l~~~~-~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~ 500 (1089)
..+|.++|+|+++ +.+|+ .+++ +++ +||++||+||++||++|+.++|.+++++++ ++.+|+|+. +
T Consensus 34 ~~vG~~ap~f~l~--~~~G~~~~~~~-~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~----~~~vi~V~~-----~ 101 (173)
T TIGR00385 34 ALIGKPVPAFPLA--ALREPLQAYTP-EAFIQGKPVLLNVWASWCPPCRAEHPYLNELAKD----GLPIVGVDY-----K 101 (173)
T ss_pred hhcCCCCCCcccc--ccCCCCcccCH-HHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc----CCEEEEEEC-----C
Confidence 3578999999965 45676 5555 554 799999999999999999999999988753 699999964 4
Q ss_pred hcHHHHHHHHHHcCCccc-eeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 501 KDLEAIRNAVLRYGISHP-VVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~-v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
++.+++++|+++++++|+ ++.|++.++++.|++.++|++|+||++|++++++.|..+.+++++.+.+++.
T Consensus 102 ~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 102 DQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred CChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 566778899999999997 6689999999999999999999999999999999999999999999888763
|
Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins. |
| >TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-19 Score=191.30 Aligned_cols=183 Identities=22% Similarity=0.273 Sum_probs=128.2
Q ss_pred ceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH----
Q 001380 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIY---- 154 (1089)
Q Consensus 79 ~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 154 (1089)
+++|+||+||||+|+.. ...+|...+...|+. ..+....+.+.....+.+.+. .+ ....++....+.+.+
T Consensus 2 ik~viFDldGtL~d~~~-~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~--~g--~~~~~~~~~~~~~~~~~~~ 75 (211)
T TIGR02247 2 IKAVIFDFGGVLLPSPG-VMRRWETERGLPGLK-DFIVTVNITGPDFNPWARTFE--RG--ELTAEAFDGLFRHEYGLRL 75 (211)
T ss_pred ceEEEEecCCceecCHH-HHHHHHHHcCCCCCc-cHHHHHHhcCCCCChHHHHHH--cC--CCCHHHHHHHHHHHhcccc
Confidence 58999999999999866 566666655555553 222233333333222222121 11 112222222222211
Q ss_pred ---------HHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHh--HHHHHHHCCCCCCCccEEEEcCCccCCCC
Q 001380 155 ---------LDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIK--VDANLAAAGLPVSMFDAIVSADAFENLKP 223 (1089)
Q Consensus 155 ---------~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~--~~~~l~~~gl~~~~fd~i~~~~~~~~~KP 223 (1089)
...+... ...++||+.++|+.|+++|++++|+||+.... ....+...++. .+||.++++++.+..||
T Consensus 76 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~-~~fd~v~~s~~~~~~KP 153 (211)
T TIGR02247 76 GHDVRIAPVFPLLYGE-NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIM-ALFDAVVESCLEGLRKP 153 (211)
T ss_pred CCCcCchhhHHHHhcc-ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhH-hhCCEEEEeeecCCCCC
Confidence 0111111 24689999999999999999999999986543 33344556775 89999999999998999
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC
Q 001380 224 APDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL 269 (1089)
Q Consensus 224 ~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~ 269 (1089)
+|++|..+++++|++|++|+||||+..|+++|+++||.+|+|.+..
T Consensus 154 ~p~~~~~~~~~~g~~~~~~l~i~D~~~di~aA~~aG~~~i~v~~~~ 199 (211)
T TIGR02247 154 DPRIYQLMLERLGVAPEECVFLDDLGSNLKPAAALGITTIKVSDEE 199 (211)
T ss_pred CHHHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHHcCCEEEEECCHH
Confidence 9999999999999999999999999999999999999999998743
|
These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA. |
| >COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-19 Score=193.19 Aligned_cols=127 Identities=24% Similarity=0.377 Sum_probs=113.2
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEE
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECI 243 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v 243 (1089)
..++|++.++|+.|+++ ++++|+||+........++++|+. ++||.++++++.+..||++++|+.+++++|++|++++
T Consensus 98 ~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~gl~-~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l 175 (229)
T COG1011 98 LPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQLGLL-DYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEAL 175 (229)
T ss_pred CccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHcCCh-hhhheEEEecccccCCCCcHHHHHHHHHcCCCcceEE
Confidence 37899999999999999 999999999999999999999996 9999999999999999999999999999999999999
Q ss_pred EEcCCh-hhHHHHHHcCCeEEEEcCCCCHH-HHhhcCCcEEecCcccCCHHHHH
Q 001380 244 VIEDAL-AGVQAAKAAQMRCIAVTTTLSEE-RLKEASPSLIRKEIGSVSLNDIL 295 (1089)
Q Consensus 244 ~VGD~~-~Di~aA~~aG~~~i~V~~g~~~~-~l~~~~~d~vi~dl~el~i~~ll 295 (1089)
||||+. +||.+|+++||++||+..+.... +.. ..+++.+.++.++ .+++
T Consensus 176 ~VgD~~~~di~gA~~~G~~~vwi~~~~~~~~~~~-~~~~~~i~~l~~l--~~~~ 226 (229)
T COG1011 176 FVGDSLENDILGARALGMKTVWINRGGKPLPDAL-EAPDYEISSLAEL--LDLL 226 (229)
T ss_pred EECCChhhhhHHHHhcCcEEEEECCCCCCCCCCc-cCCceEEcCHHHH--HHHH
Confidence 999999 89899999999999999865221 111 4678888888777 4444
|
|
| >TIGR02540 gpx7 putative glutathione peroxidase Gpx7 | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-19 Score=182.61 Aligned_cols=134 Identities=16% Similarity=0.233 Sum_probs=111.3
Q ss_pred CCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCC--hhcHHHHHHH
Q 001380 432 EFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDN--EKDLEAIRNA 509 (1089)
Q Consensus 432 ~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~--~~~~~~~~~~ 509 (1089)
+|+ +.+++|+++++ ++++||++||+||++||++|+.++|.|++++++|+++++.+|+|++..+.. .++.+.+++|
T Consensus 4 ~f~--l~~~~G~~~~l-~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f 80 (153)
T TIGR02540 4 SFE--VKDARGRTVSL-EKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESF 80 (153)
T ss_pred cce--eECCCCCEecH-HHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHH
Confidence 455 45679999999 999999999999999999999999999999999999899999998643322 3678899999
Q ss_pred HHH-cCCccceeec-----CChhHHHHhCC---CceeE----EEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 510 VLR-YGISHPVVND-----GDMNLWRELGV---NSWPT----FAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 510 ~~~-~~~~~~v~~d-----~~~~l~~~~~v---~~~Pt----~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
+++ ++++||++.| .+...+..|.+ ...|+ +||||++|+++.++.|....+.+.+.|+.+
T Consensus 81 ~~~~~~~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 81 ARRNYGVTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred HHHhcCCCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHh
Confidence 986 8999999865 23333334443 35897 999999999999999999988888887765
|
This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7. |
| >cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-19 Score=175.64 Aligned_cols=123 Identities=24% Similarity=0.287 Sum_probs=108.8
Q ss_pred CCCCCCccccCCCCC--ceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHH
Q 001380 428 PIVPEFPAKLDWLNT--APLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEA 505 (1089)
Q Consensus 428 ~~~P~f~~~~~~~~g--~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~ 505 (1089)
+++|+|++. +++| ..+++ ++++||++||+||++||++|+.++|.|+++.+++ ++.+|+|+. +++.++
T Consensus 1 ~~~p~f~~~--~~~g~~~~~~~-~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~-----~~~~~~ 69 (127)
T cd03010 1 KPAPAFSLP--ALPGPDKTLTS-ADLKGKPYLLNVWASWCAPCREEHPVLMALARQG---RVPIYGINY-----KDNPEN 69 (127)
T ss_pred CCCCCcccc--cccCCCccccH-HHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---CcEEEEEEC-----CCCHHH
Confidence 368999854 4577 78888 8999999999999999999999999999998875 499999965 577889
Q ss_pred HHHHHHHcCCccc-eeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhH
Q 001380 506 IRNAVLRYGISHP-VVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDL 561 (1089)
Q Consensus 506 ~~~~~~~~~~~~~-v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l 561 (1089)
+++|+++++++|+ ++.|.+.++++.|++.++|++|+||++|+++.++.|..+.+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 70 ALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred HHHHHHhcCCCCceEEECCcchHHHhcCCCCCCeEEEECCCceEEEEEeccCChHhc
Confidence 9999999999985 6689999999999999999999999999999999998876543
|
Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c. |
| >PTZ00256 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-19 Score=185.06 Aligned_cols=142 Identities=17% Similarity=0.220 Sum_probs=115.3
Q ss_pred CCCCCCCCccccCCCCCceeecccccCCCEE-EEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCCh--hc
Q 001380 426 TTPIVPEFPAKLDWLNTAPLQFRRDLKGKVV-VLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNE--KD 502 (1089)
Q Consensus 426 ~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~v-ll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~--~~ 502 (1089)
.+..+|+|+++ +++|+++++ ++++||++ |+.|||+||++|+.|+|.|++++++|+++++.||+|+++.+... .+
T Consensus 16 ~~~~~p~f~l~--d~~G~~vsL-s~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~ 92 (183)
T PTZ00256 16 PTKSFFEFEAI--DIDGQLVQL-SKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWD 92 (183)
T ss_pred CCCcccceEeE--cCCCCEEeH-HHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCC
Confidence 46789999964 569999999 99999965 45669999999999999999999999988999999987543222 35
Q ss_pred HHHHHHHHH-HcCCccceeec--CChh----HHH------------HhCCCceeE---EEEECCCCcEEEEecCCCchhh
Q 001380 503 LEAIRNAVL-RYGISHPVVND--GDMN----LWR------------ELGVNSWPT---FAVVGPNGKLLAQLAGEGHRKD 560 (1089)
Q Consensus 503 ~~~~~~~~~-~~~~~~~v~~d--~~~~----l~~------------~~~v~~~Pt---~~lid~~G~i~~~~~G~~~~~~ 560 (1089)
.+++++|++ +++++||++.| .++. ++. .+++.++|+ +||||++|+|+.++.|..+.+.
T Consensus 93 ~~~~~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~ 172 (183)
T PTZ00256 93 EPEIKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNE 172 (183)
T ss_pred HHHHHHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHH
Confidence 688888875 78999999854 3332 331 236778994 6999999999999999998888
Q ss_pred HHHHHHHHHH
Q 001380 561 LDDLVEAALL 570 (1089)
Q Consensus 561 l~~~l~~~l~ 570 (1089)
+.+.|.++++
T Consensus 173 l~~~I~~ll~ 182 (183)
T PTZ00256 173 MIQDIEKLLN 182 (183)
T ss_pred HHHHHHHHhc
Confidence 8888887764
|
|
| >PRK03147 thiol-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.5e-19 Score=181.73 Aligned_cols=138 Identities=28% Similarity=0.512 Sum_probs=126.1
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhc
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKD 502 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~ 502 (1089)
....|..+|+|++ .+.+|+.+++ ++++||+++|+||++||++|+.+++.|++++++|++.++.+|+|+. +++
T Consensus 34 ~~~~g~~~p~~~~--~~~~g~~~~l-~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~-----d~~ 105 (173)
T PRK03147 34 KVQVGKEAPNFVL--TDLEGKKIEL-KDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNV-----DET 105 (173)
T ss_pred ccCCCCCCCCcEe--ecCCCCEEeH-HHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEc-----CCC
Confidence 4568999999995 4669999999 8899999999999999999999999999999999988899999976 467
Q ss_pred HHHHHHHHHHcCCccceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 503 LEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 503 ~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
.+++++++++++++|+++.|.+.++.+.|++..+|++|+||++|+++..+.|....+++.+.++++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 106 ELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred HHHHHHHHHHhCCCceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 789999999999999999999999999999999999999999999999999998888888877653
|
|
| >PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.7e-19 Score=179.03 Aligned_cols=136 Identities=15% Similarity=0.210 Sum_probs=118.5
Q ss_pred ccCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecC-CCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCCh
Q 001380 422 ENRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTY-CCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNE 500 (1089)
Q Consensus 422 ~~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~-wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~ 500 (1089)
.....|+.+|+|+++ +++|+.+++ ++++||++||+||++ ||+.|+.+++.|++++++++++++.+|+|+.
T Consensus 2 ~~~~~g~~~p~f~l~--~~~G~~~~l-~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~------ 72 (154)
T PRK09437 2 NPLKAGDIAPKFSLP--DQDGEQVSL-TDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGIST------ 72 (154)
T ss_pred CcCCCCCcCCCcEee--CCCCCEEeH-HHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcC------
Confidence 345789999999964 568999999 889999999999976 7888999999999999999988999999975
Q ss_pred hcHHHHHHHHHHcCCccceeecCChhHHHHhCCCce------------eEEEEECCCCcEEEEecCCCchhhHHHHHH
Q 001380 501 KDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSW------------PTFAVVGPNGKLLAQLAGEGHRKDLDDLVE 566 (1089)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~------------Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~ 566 (1089)
++.+++++|+++++++|+++.|.++.+++.||+... |++||||++|+|++.+.|....+.+.+.++
T Consensus 73 d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~~~~ 150 (154)
T PRK09437 73 DKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDVVLD 150 (154)
T ss_pred CCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHHHHH
Confidence 367889999999999999999999999999998654 788999999999999998766666555443
|
|
| >PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-19 Score=173.98 Aligned_cols=117 Identities=34% Similarity=0.609 Sum_probs=109.6
Q ss_pred CCCCCCCCccccCCCCCceeecccccCCCEEEEEEecC-CCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHH
Q 001380 426 TTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTY-CCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLE 504 (1089)
Q Consensus 426 ~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~-wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~ 504 (1089)
+|+++|+|+++ +.+|+.+++ ++++||++||.||++ ||+.|+.+++.|++++++|+++++.+|+|+. ++.+
T Consensus 1 vG~~~P~f~l~--~~~g~~~~l-~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~------d~~~ 71 (124)
T PF00578_consen 1 VGDKAPDFTLT--DSDGKTVSL-SDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGIST------DDPE 71 (124)
T ss_dssp TTSBGGCEEEE--TTTSEEEEG-GGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEES------SSHH
T ss_pred CcCCCCCcEeE--CCCCCEEEH-HHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeeccc------cccc
Confidence 68999999965 558999999 999999999999998 9999999999999999999998999999985 5666
Q ss_pred HHHHHHHHcCCccceeecCChhHHHHhCCC------ceeEEEEECCCCcEEEE
Q 001380 505 AIRNAVLRYGISHPVVNDGDMNLWRELGVN------SWPTFAVVGPNGKLLAQ 551 (1089)
Q Consensus 505 ~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~ 551 (1089)
++++++++++++||++.|.+.++++.|++. ..|++||||++|+|+++
T Consensus 72 ~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 72 EIKQFLEEYGLPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHHHHHHHHTCSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred chhhhhhhhccccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence 999999999999999999999999999998 99999999999999974
|
Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G .... |
| >TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-18 Score=180.85 Aligned_cols=177 Identities=27% Similarity=0.335 Sum_probs=124.1
Q ss_pred EEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHH------HHHHH
Q 001380 81 AVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKR------FFEIY 154 (1089)
Q Consensus 81 ~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 154 (1089)
+|+||+||||++++..+.. +.. ..+............. .......+.+...++... ........ ....+
T Consensus 1 ~vlFDlDgtLv~~~~~~~~-~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 75 (183)
T TIGR01509 1 AILFDLDGVLVDTSSAIEK-LVN--REEFPLVPDELGVSAV-GKLELALRRWKEKYGRTM-SAEDFYLLYENADIKQLFY 75 (183)
T ss_pred CeeeccCCceechHHHHHH-HHH--HHhCCCCcHHHHHHHH-HHHHHHhhccccccCCCC-CcHHHHHHHhHHHHHHHHH
Confidence 4899999999999887665 111 2222222222222221 112222222222233222 22221111 22222
Q ss_pred HHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHH
Q 001380 155 LDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKI 234 (1089)
Q Consensus 155 ~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~ 234 (1089)
........ ..++||+.++|+.|+++|++++|+||+.... ...+.++|+. .+|+.++++++.+..||+|++|+.++++
T Consensus 76 ~~~~~~~~-~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~-~~f~~i~~~~~~~~~KP~~~~~~~~~~~ 152 (183)
T TIGR01509 76 DAILDEEK-LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLR-DLFDVVIFSGDVGRGKPDPDIYLLALKK 152 (183)
T ss_pred HHHHhccC-CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCH-HHCCEEEEcCCCCCCCCCHHHHHHHHHH
Confidence 22222211 3789999999999999999999999998887 6667779996 9999999999999999999999999999
Q ss_pred cCCCCCcEEEEcCChhhHHHHHHcCCeEEEE
Q 001380 235 LNVPTSECIVIEDALAGVQAAKAAQMRCIAV 265 (1089)
Q Consensus 235 lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V 265 (1089)
+|++|++|+||||+..|+++|+++|+.+|+|
T Consensus 153 ~~~~~~~~~~vgD~~~di~aA~~~G~~~i~v 183 (183)
T TIGR01509 153 LGLKPEECLFVDDSPAGIEAAKAAGMHTVLV 183 (183)
T ss_pred cCCCcceEEEEcCCHHHHHHHHHcCCEEEeC
Confidence 9999999999999999999999999999975
|
HAD subfamilies caused by an overly broad single model. |
| >TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-19 Score=186.04 Aligned_cols=170 Identities=18% Similarity=0.221 Sum_probs=126.8
Q ss_pred eEEEEecCCcccCCchHHHHHHHHHHH-----HcCCCCCHH-hHh----hhcCCCHHHHHHHHHhhcCCCCCCHHHHHHH
Q 001380 80 SAVLFDMDGVLCNSEEPSRRAAVDVFA-----EMGVEVTVE-DFL----PFMGTGEANFLGGVASVKGVKGFDSEAAKKR 149 (1089)
Q Consensus 80 k~ViFD~DGTL~d~~~~~~~a~~~~~~-----~~g~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (1089)
++|+||+||||+|+...+..++.+.+. ++|++.... .+. ...+.+.... ..... ...+ .
T Consensus 1 ~~viFDlDGTL~ds~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~g~~~~~~----~~~~~---~~~~----~ 69 (184)
T TIGR01993 1 DVWFFDLDNTLYPHSAGIFLQIDRNITEFVAARLKLSEEEARVLRKDYYREYGTTLAGL----MILHE---IDAD----E 69 (184)
T ss_pred CeEEEeCCCCCCCCcccHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHchHHHHH----HHhhC---CCHH----H
Confidence 479999999999999888888877654 456543221 111 1122211111 11111 1222 2
Q ss_pred HHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccC----CCCCH
Q 001380 150 FFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFEN----LKPAP 225 (1089)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~----~KP~~ 225 (1089)
+.+.+.+.. ......++||+.++|+.|+ ++++|+||+....++..++.+|+. .+||.++++++.+. .||+|
T Consensus 70 ~~~~~~~~~-~~~~~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~gl~-~~fd~i~~~~~~~~~~~~~KP~p 144 (184)
T TIGR01993 70 YLRYVHGRL-PYEKLKPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRLGIE-DCFDGIFCFDTANPDYLLPKPSP 144 (184)
T ss_pred HHHHHhccC-CHHhCCCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHcCcH-hhhCeEEEeecccCccCCCCCCH
Confidence 333333211 1113368999999999998 579999999999999999999996 99999999998887 49999
Q ss_pred HHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEE
Q 001380 226 DIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAV 265 (1089)
Q Consensus 226 ~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V 265 (1089)
++|+++++++|++|++|+||||+..|+++|+++||++|+|
T Consensus 145 ~~~~~~~~~~~~~~~~~l~vgD~~~di~aA~~~G~~~i~v 184 (184)
T TIGR01993 145 QAYEKALREAGVDPERAIFFDDSARNIAAAKALGMKTVLV 184 (184)
T ss_pred HHHHHHHHHhCCCccceEEEeCCHHHHHHHHHcCCEEeeC
Confidence 9999999999999999999999999999999999999875
|
These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509). |
| >cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-19 Score=175.55 Aligned_cols=105 Identities=19% Similarity=0.239 Sum_probs=89.6
Q ss_pred CCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCC-------CCEEEEEEeCCCCCChhcHHHHHHHHHHc
Q 001380 441 NTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD-------MPFTVVGVHSAKFDNEKDLEAIRNAVLRY 513 (1089)
Q Consensus 441 ~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~-------~~v~vi~v~~~~~~~~~~~~~~~~~~~~~ 513 (1089)
+...+++ ++++||+|+|+|||+||++|+.++|.|+++++++++ +++.+|+|+. +++.+.+++|++++
T Consensus 14 ~~~~~~l-s~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~-----D~~~~~~~~f~~~~ 87 (146)
T cd03008 14 DTEREIV-ARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSM-----DQSEQQQESFLKDM 87 (146)
T ss_pred hcccccH-HHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEEC-----CCCHHHHHHHHHHC
Confidence 3445677 899999999999999999999999999999987754 3799999975 45667899999999
Q ss_pred CCccc---eeecCChhHHHHhCCCceeEEEEECCCCcEEEE
Q 001380 514 GISHP---VVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQ 551 (1089)
Q Consensus 514 ~~~~~---v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~ 551 (1089)
+++|+ +..+.+..+++.|++.++|++||||++|+|+.+
T Consensus 88 ~~~~~~~p~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 88 PKKWLFLPFEDEFRRELEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred CCCceeecccchHHHHHHHHcCCCCCCEEEEECCCCcEEee
Confidence 98873 333345689999999999999999999999976
|
RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. |
| >PRK09456 ?-D-glucose-1-phosphatase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.6e-18 Score=179.68 Aligned_cols=175 Identities=14% Similarity=0.180 Sum_probs=128.2
Q ss_pred eEEEEecCCcccCCchHHHH-HHHHHHHHcCCCCCHHhH-----------hhhc-CCCHHHHHHHHHhhcCCCCCCHHHH
Q 001380 80 SAVLFDMDGVLCNSEEPSRR-AAVDVFAEMGVEVTVEDF-----------LPFM-GTGEANFLGGVASVKGVKGFDSEAA 146 (1089)
Q Consensus 80 k~ViFD~DGTL~d~~~~~~~-a~~~~~~~~g~~~~~~~~-----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (1089)
.+|+||+||||++....... .+.. ..+.. ...+ .... +.+..++...+....+... ..+..
T Consensus 1 ~~viFDldgvL~d~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~ 74 (199)
T PRK09456 1 MLYIFDLGNVIVDIDFNRVLGVWSD---LSRVP--LATLKKRFTMGEAFHQHERGEISDEAFAEALCHEMALSL-SYEQF 74 (199)
T ss_pred CEEEEeCCCccccCcHHHHHHHHHH---hcCCC--HHHHHHHHhcCcHHHHHhcCCCCHHHHHHHHHHHhCCCC-CHHHH
Confidence 37999999999997643221 1211 11111 1111 1111 2445556666666555432 22333
Q ss_pred HHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHC-CCCCCCccEEEEcCCccCCCCCH
Q 001380 147 KKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAA-GLPVSMFDAIVSADAFENLKPAP 225 (1089)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~-gl~~~~fd~i~~~~~~~~~KP~~ 225 (1089)
...+.+ .+ ..++||+.++|+.|+++|++++|+||+........+... ++. .+||.++++++++..||+|
T Consensus 75 ~~~~~~----~~-----~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~-~~fd~v~~s~~~~~~KP~p 144 (199)
T PRK09456 75 AHGWQA----VF-----VALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVR-AAADHIYLSQDLGMRKPEA 144 (199)
T ss_pred HHHHHH----HH-----hccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHH-HhcCEEEEecccCCCCCCH
Confidence 333322 22 147999999999999999999999999887777666553 775 8899999999999999999
Q ss_pred HHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCC
Q 001380 226 DIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLS 270 (1089)
Q Consensus 226 ~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~ 270 (1089)
++|+++++++|++|++|+||||+..|+++|+++||+++++..+.+
T Consensus 145 ~~~~~~~~~~~~~p~~~l~vgD~~~di~aA~~aG~~~i~~~~~~~ 189 (199)
T PRK09456 145 RIYQHVLQAEGFSAADAVFFDDNADNIEAANALGITSILVTDKQT 189 (199)
T ss_pred HHHHHHHHHcCCChhHeEEeCCCHHHHHHHHHcCCEEEEecCCcc
Confidence 999999999999999999999999999999999999999988653
|
|
| >COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.9e-19 Score=169.19 Aligned_cols=124 Identities=21% Similarity=0.314 Sum_probs=113.7
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChh
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEK 501 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~ 501 (1089)
...+|+++|||++..+ +|+.++| ++++||+|||+|| ..++|.|..|+..++++.++|.+.|.+|||||. +
T Consensus 3 ~l~~G~~aPdF~Lp~~--~g~~v~L-sd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~------D 73 (157)
T COG1225 3 MLKVGDKAPDFELPDQ--DGETVSL-SDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISP------D 73 (157)
T ss_pred cCCCCCcCCCeEeecC--CCCEEeh-HHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeC------C
Confidence 4678999999996554 9999999 9999999999999 689999999999999999999999999999984 7
Q ss_pred cHHHHHHHHHHcCCccceeecCChhHHHHhCCC------------ceeEEEEECCCCcEEEEecCC
Q 001380 502 DLEAIRNAVLRYGISHPVVNDGDMNLWRELGVN------------SWPTFAVVGPNGKLLAQLAGE 555 (1089)
Q Consensus 502 ~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~------------~~Pt~~lid~~G~i~~~~~G~ 555 (1089)
+.+..++|.++++++|+.+.|.+.+++++|||. ..+++||||++|+|++.+...
T Consensus 74 s~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v 139 (157)
T COG1225 74 SPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKV 139 (157)
T ss_pred CHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEecCC
Confidence 899999999999999999999999999999984 358999999999999998543
|
|
| >cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.1e-19 Score=174.55 Aligned_cols=129 Identities=22% Similarity=0.380 Sum_probs=116.8
Q ss_pred CCCCCCccccCCCCCceeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHH
Q 001380 428 PIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAI 506 (1089)
Q Consensus 428 ~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~ 506 (1089)
+++|+|++. +.+|+.+++ ++++||++||+|| ++||+.|..+++.|++++++++++++.+|+|++ ++.+.+
T Consensus 1 ~~~p~f~l~--~~~g~~~~l-~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~------d~~~~~ 71 (140)
T cd03017 1 DKAPDFTLP--DQDGETVSL-SDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSP------DSVESH 71 (140)
T ss_pred CCCCCcccc--CCCCCEEeH-HHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcC------CCHHHH
Confidence 368999954 568999999 8999999999999 589999999999999999999888999999975 467889
Q ss_pred HHHHHHcCCccceeecCChhHHHHhCCCce---------eEEEEECCCCcEEEEecCCCchhhHHHHH
Q 001380 507 RNAVLRYGISHPVVNDGDMNLWRELGVNSW---------PTFAVVGPNGKLLAQLAGEGHRKDLDDLV 565 (1089)
Q Consensus 507 ~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~---------Pt~~lid~~G~i~~~~~G~~~~~~l~~~l 565 (1089)
++|+++++++|+++.|.+..+++.||+... |++||||++|+|++.+.|....+.+.+.+
T Consensus 72 ~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 72 AKFAEKYGLPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred HHHHHHhCCCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 999999999999999999999999999988 99999999999999999988777776654
|
The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w |
| >KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-18 Score=180.70 Aligned_cols=191 Identities=24% Similarity=0.318 Sum_probs=146.8
Q ss_pred CCCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcC-------------------CCHHHHHHHHHhh-
Q 001380 76 WGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMG-------------------TGEANFLGGVASV- 135 (1089)
Q Consensus 76 ~~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~- 135 (1089)
.+++++|+||++|||+.........|.++.+++|+....+.+...+. .+..+++..+...
T Consensus 4 ~~~iravtfD~~~tLl~~~~~~~~~y~~i~~~~gl~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~l~~~~ww~~lv~~~ 83 (237)
T KOG3085|consen 4 LMRIRAVTFDAGGTLLATLPPVMEVYCEIAEAYGLEYDDSLIETIFRKDFKKMSEKGPFFGLYSGELTLSQWWPKLVEST 83 (237)
T ss_pred ccceEEEEEeCCCceeecCCccHHHHHHHHHHhCCCCCHHHHhHhhhHHHHhhcccCCcccccCCcccHHHHHHHHHHHH
Confidence 46789999999999999899999999999999999855544433322 2344444433222
Q ss_pred cCCCCCCHHHHHH-HHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEE
Q 001380 136 KGVKGFDSEAAKK-RFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVS 214 (1089)
Q Consensus 136 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~ 214 (1089)
++.......+... .+...+...+. ...+...+++.++++.||++|+.++++||.+. ..+.++..+++. .+||.++.
T Consensus 84 f~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~lq~lR~~g~~l~iisN~d~-r~~~~l~~~~l~-~~fD~vv~ 160 (237)
T KOG3085|consen 84 FGKAGIDYEEELLENFSFRLFSTFA-PSAWKYLDGMQELLQKLRKKGTILGIISNFDD-RLRLLLLPLGLS-AYFDFVVE 160 (237)
T ss_pred hccccchhHHHHHhhhhhheecccc-ccCceeccHHHHHHHHHHhCCeEEEEecCCcH-HHHHHhhccCHH-Hhhhhhhh
Confidence 2222212111111 12222222222 23567889999999999999999999999655 455899999996 99999999
Q ss_pred cCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCCh-hhHHHHHHcCCeEEEEcCCC
Q 001380 215 ADAFENLKPAPDIFLSASKILNVPTSECIVIEDAL-AGVQAAKAAQMRCIAVTTTL 269 (1089)
Q Consensus 215 ~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~ 269 (1089)
+.+.+..||+|++|+.+++++|+.|++|+||||.. ||+++|+++||++++|....
T Consensus 161 S~e~g~~KPDp~If~~al~~l~v~Pee~vhIgD~l~nD~~gA~~~G~~ailv~~~~ 216 (237)
T KOG3085|consen 161 SCEVGLEKPDPRIFQLALERLGVKPEECVHIGDLLENDYEGARNLGWHAILVDNSI 216 (237)
T ss_pred hhhhccCCCChHHHHHHHHHhCCChHHeEEecCccccccHhHHHcCCEEEEEcccc
Confidence 99999999999999999999999999999999999 99999999999999998654
|
|
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.8e-18 Score=199.99 Aligned_cols=254 Identities=24% Similarity=0.356 Sum_probs=191.7
Q ss_pred CCCceEEEeecCCeEEEEeCCCCEEEEEe------CCCCEEEEEecCCCCCC------CCC-CCCccccCCcceeEEeeC
Q 001380 601 KFPGKLAIDILNNRLFISDSNHNRIVVTD------LDGNFIVQIGSSGEEGL------RDG-SFDDATFNRPQGLAYNAK 667 (1089)
Q Consensus 601 ~~P~~vavd~~~g~L~vsd~~~~~I~~~~------~~g~~~~~i~~~g~~g~------~dG-~~~~~~f~~P~gla~d~~ 667 (1089)
.+-.-+|++|.+|.|||+|..+++|+++. +.++.....|. |+.+. .|| .+.+|++..|.||++|++
T Consensus 407 sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~-Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~ 485 (1899)
T KOG4659|consen 407 SHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGD-GEVCLPADESCGDGALAQDAQLIFPKGIAFDKM 485 (1899)
T ss_pred cceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEecc-CcCccccccccCcchhcccceeccCCceeEccC
Confidence 45667999999999999999999999983 23444444443 45443 255 678899999999999999
Q ss_pred CCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCC---CCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEE
Q 001380 668 KNLLYVADTENHALREIDFVNDTVRTLAGNGTKGS---DYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHS 744 (1089)
Q Consensus 668 g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~---~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~ 744 (1089)
|+ ||++| ..+||++| .+|.++++.|+..... .+.+........|.+|.++|++|-.+.|||-|. |.|.+++
T Consensus 486 g~-lYfaD--~t~IR~iD-~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~--nvvlrit 559 (1899)
T KOG4659|consen 486 GN-LYFAD--GTRIRVID-TTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDT--NVVLRIT 559 (1899)
T ss_pred Cc-EEEec--ccEEEEec-cCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeec--ceEEEEc
Confidence 98 99999 67899999 5899999987654322 233455566778999999999999999999985 8888888
Q ss_pred CCCCeEEEEeCCCccccCCC------CCCCCccccCCceEEEcCCCCEEEEEeCCCC---eEEEEEcCCCCeEEEecCC-
Q 001380 745 TVDGVTRAFSGDGYERNLNG------SSSLNTSFAQPSGISLSPDFMEIYVADSESS---SIRALNLKTGGSRLLAGGD- 814 (1089)
Q Consensus 745 ~~~g~~~~~~g~g~~~~~~g------~~~~~~~~~~P~glav~~~g~~lyvad~~~~---~I~~~~~~~~~~~~~~g~~- 814 (1089)
.. +.++.++|....-...+ .......+..+..|++.++| .|||+++... +||++..+ |....++|+.
T Consensus 560 ~~-~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G-~lyvaEsD~rriNrvr~~~td-g~i~ilaGa~S 636 (1899)
T KOG4659|consen 560 VV-HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDG-ALYVAESDGRRINRVRKLSTD-GTISILAGAKS 636 (1899)
T ss_pred cC-ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCc-eEEEEeccchhhhheEEeccC-ceEEEecCCCC
Confidence 64 55557776543222222 11123445567999999999 9999998764 66777765 5777888862
Q ss_pred CCCCCC---ccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEe
Q 001380 815 PIFPDN---LFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLD 864 (1089)
Q Consensus 815 ~~~~~~---l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d 864 (1089)
+..++. --.|...|+.+.+|+|+.|.++|++|||.+||||.+|.||+++.
T Consensus 637 ~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN~rIr~Vs 689 (1899)
T KOG4659|consen 637 PCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGNSRIRKVS 689 (1899)
T ss_pred CCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCchhhhhhh
Confidence 222221 12456678889999999999999999999999999999888763
|
|
| >cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-18 Score=177.49 Aligned_cols=142 Identities=22% Similarity=0.313 Sum_probs=121.3
Q ss_pred CCCCCCCccccCCCCCceeeccccc-CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCC--ChhcH
Q 001380 427 TPIVPEFPAKLDWLNTAPLQFRRDL-KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFD--NEKDL 503 (1089)
Q Consensus 427 g~~~P~f~~~~~~~~g~~~~l~~~~-~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~--~~~~~ 503 (1089)
|+.+|+|++ .+.+|+.+++ +++ +||++||+||++||+.|..+++.|++++++|+++++.+|+|+++... ..++.
T Consensus 1 g~~~p~f~l--~~~~g~~v~l-~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~ 77 (171)
T cd02969 1 GSPAPDFSL--PDTDGKTYSL-ADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSP 77 (171)
T ss_pred CCcCCCccc--cCCCCCEEeH-HHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCH
Confidence 578999995 4568999999 887 99999999999999999999999999999999888999999874321 12578
Q ss_pred HHHHHHHHHcCCccceeecCChhHHHHhCCCceeEEEEECCCCcEEEEec---------CCCchhhHHHHHHHHHHH
Q 001380 504 EAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLA---------GEGHRKDLDDLVEAALLF 571 (1089)
Q Consensus 504 ~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~---------G~~~~~~l~~~l~~~l~~ 571 (1089)
+.+++++++++++|+++.|.+..+++.|++..+|++||||++|+|++... +..+.+.+.+.|+.+++.
T Consensus 78 ~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 154 (171)
T cd02969 78 ENMKAKAKEHGYPFPYLLDETQEVAKAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAG 154 (171)
T ss_pred HHHHHHHHHCCCCceEEECCchHHHHHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999998731 122446677777776653
|
Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. |
| >PRK00522 tpx lipid hydroperoxide peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-18 Score=175.45 Aligned_cols=134 Identities=16% Similarity=0.144 Sum_probs=112.7
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCC-CcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChh
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYC-CINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEK 501 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~w-C~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~ 501 (1089)
...+|+++|+|++. +.+|+.+++ ++++||++||+||++| |++|+.|+|.|+++++++. ++.||+||. +
T Consensus 17 ~~~~G~~~P~f~l~--~~~g~~v~l-~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~------D 85 (167)
T PRK00522 17 LPQVGDKAPDFTLV--ANDLSDVSL-ADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISA------D 85 (167)
T ss_pred CCCCCCCCCCeEEE--cCCCcEEeh-HHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeC------C
Confidence 34689999999964 558999999 8999999999999999 9999999999999999984 799999975 4
Q ss_pred cHHHHHHHHHHcCCc-cceeec-CChhHHHHhCCCcee---------EEEEECCCCcEEEEecCC--CchhhHHHHHHH
Q 001380 502 DLEAIRNAVLRYGIS-HPVVND-GDMNLWRELGVNSWP---------TFAVVGPNGKLLAQLAGE--GHRKDLDDLVEA 567 (1089)
Q Consensus 502 ~~~~~~~~~~~~~~~-~~v~~d-~~~~l~~~~~v~~~P---------t~~lid~~G~i~~~~~G~--~~~~~l~~~l~~ 567 (1089)
+++..++|+++++++ ++++.| .++.+++.||+...| ++||||++|+|++.+.+. .....+++.++.
T Consensus 86 ~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~ 164 (167)
T PRK00522 86 LPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAA 164 (167)
T ss_pred CHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHH
Confidence 557789999999998 689999 456999999998777 999999999999998643 333445555443
|
|
| >TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.4e-18 Score=171.40 Aligned_cols=154 Identities=29% Similarity=0.462 Sum_probs=122.6
Q ss_pred EEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhcC
Q 001380 81 AVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDKYAK 160 (1089)
Q Consensus 81 ~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (1089)
+|+||+||||+|+...+..++.+++++++. +.+.+....+.....+.... ...+++. . +..
T Consensus 1 ~iifD~DGTL~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~------------~~~~~~~----~-~~~ 61 (154)
T TIGR01549 1 AILFDIDGTLVDSSFAIRRAFEETLEEFGE--DFQALKALRGLAEELLYRIA------------TSFEELL----G-YDA 61 (154)
T ss_pred CeEecCCCcccccHHHHHHHHHHHHHHhcc--cHHHHHHHHccChHHHHHHH------------HHHHHHh----C-cch
Confidence 489999999999999999999999999885 33444434433322221110 0111111 1 111
Q ss_pred CCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCC
Q 001380 161 PNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTS 240 (1089)
Q Consensus 161 ~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~ 240 (1089)
....+||+.++|+.|+++|++++|+||+.+..+...++.+ +. .+|+.++++++.. .||+|++|.++++++|+++
T Consensus 62 --~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l~-~~f~~i~~~~~~~-~Kp~~~~~~~~~~~~~~~~- 135 (154)
T TIGR01549 62 --EEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-LG-DYFDLILGSDEFG-AKPEPEIFLAALESLGLPP- 135 (154)
T ss_pred --hheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-HH-hcCcEEEecCCCC-CCcCHHHHHHHHHHcCCCC-
Confidence 2256899999999999999999999999999999999998 75 8899999999888 9999999999999999999
Q ss_pred cEEEEcCChhhHHHHHHcC
Q 001380 241 ECIVIEDALAGVQAAKAAQ 259 (1089)
Q Consensus 241 ~~v~VGD~~~Di~aA~~aG 259 (1089)
+|+||||+..|+++|+++|
T Consensus 136 ~~l~iGDs~~Di~aa~~aG 154 (154)
T TIGR01549 136 EVLHVGDNLNDIEGARNAG 154 (154)
T ss_pred CEEEEeCCHHHHHHHHHcc
Confidence 9999999999999999987
|
HAD subfamilies caused by an overly broad single model. |
| >PHA02597 30 | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-18 Score=182.12 Aligned_cols=188 Identities=15% Similarity=0.176 Sum_probs=129.7
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH-H
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYL-D 156 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 156 (1089)
|+|+|+||+||||+|.. .++..+++++|++. +++....+.......... .+. .. ....++.+.+. .
T Consensus 1 m~k~viFDlDGTLiD~~----~~~~~~~~~~g~~~--~~~~~~~g~~~~~~~~~~---~~~---~~-~~~~~~~~~~~~~ 67 (197)
T PHA02597 1 MKPTILTDVDGVLLSWQ----SGLPYFAQKYNIPT--DHILKMIQDERFRDPGEL---FGC---DQ-ELAKKLIEKYNNS 67 (197)
T ss_pred CCcEEEEecCCceEchh----hccHHHHHhcCCCH--HHHHHHHhHhhhcCHHHH---hcc---cH-HHHHHHhhhhhHH
Confidence 47999999999999944 45677888888753 454444443222111111 111 11 22223333333 2
Q ss_pred HhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCC---CCCccEEEEcCCccCCCCCHHHHHHHHH
Q 001380 157 KYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLP---VSMFDAIVSADAFENLKPAPDIFLSASK 233 (1089)
Q Consensus 157 ~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~---~~~fd~i~~~~~~~~~KP~~~~~~~~l~ 233 (1089)
..... ..++||+.++|+.|+++ ++++++||.........++.+++. ..+|+.++++++. ||+|++|..+++
T Consensus 68 ~~~~~--~~~~pG~~e~L~~L~~~-~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~i~~~~~~---~~kp~~~~~a~~ 141 (197)
T PHA02597 68 DFIRY--LSAYDDALDVINKLKED-YDFVAVTALGDSIDALLNRQFNLNALFPGAFSEVLMCGHD---ESKEKLFIKAKE 141 (197)
T ss_pred HHHHh--ccCCCCHHHHHHHHHhc-CCEEEEeCCccchhHHHHhhCCHHHhCCCcccEEEEeccC---cccHHHHHHHHH
Confidence 22122 36899999999999997 578889997776666677777774 1256778887763 678999999999
Q ss_pred HcCCCCCcEEEEcCChhhHHHHHHc--CCeEEEEcCCCCHHHHhhcCCcEEecCcccC
Q 001380 234 ILNVPTSECIVIEDALAGVQAAKAA--QMRCIAVTTTLSEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 234 ~lgv~p~~~v~VGD~~~Di~aA~~a--G~~~i~V~~g~~~~~l~~~~~d~vi~dl~el 289 (1089)
++| +++++||||+..|+++|+++ ||++++|.+|.. .....+++.+.++.|+
T Consensus 142 ~~~--~~~~v~vgDs~~di~aA~~a~~Gi~~i~~~~~~~---~~~~~~~~~~~~~~~~ 194 (197)
T PHA02597 142 KYG--DRVVCFVDDLAHNLDAAHEALSQLPVIHMLRGER---DHIPKLAHRVKSWNDI 194 (197)
T ss_pred HhC--CCcEEEeCCCHHHHHHHHHHHcCCcEEEecchhh---ccccchhhhhccHHHH
Confidence 999 89999999999999999999 999999999843 2222455677776655
|
2 hypothetical protein; Provisional |
| >cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.2e-18 Score=174.52 Aligned_cols=125 Identities=22% Similarity=0.298 Sum_probs=103.8
Q ss_pred CCCCCCCCccccCCCCC----ceeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCCh
Q 001380 426 TTPIVPEFPAKLDWLNT----APLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNE 500 (1089)
Q Consensus 426 ~g~~~P~f~~~~~~~~g----~~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~ 500 (1089)
+|+++|+|++. +.+| +.+++ ++++||++||+|| ++||++|..+++.|++++++|++.++.+|+|++ +..
T Consensus 1 vG~~aP~f~~~--~~~g~~~~~~~~l-~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~---d~~ 74 (173)
T cd03015 1 VGKKAPDFKAT--AVVPNGEFKEISL-SDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVST---DSH 74 (173)
T ss_pred CCCcCCCCEee--cccCCCCceEEeh-HHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEec---CCH
Confidence 58999999964 3455 68999 8999999999999 899999999999999999999988999999986 222
Q ss_pred hcHHHHHHHHHH----cCCccceeecCChhHHHHhCCC------ceeEEEEECCCCcEEEEecCCC
Q 001380 501 KDLEAIRNAVLR----YGISHPVVNDGDMNLWRELGVN------SWPTFAVVGPNGKLLAQLAGEG 556 (1089)
Q Consensus 501 ~~~~~~~~~~~~----~~~~~~v~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~G~~ 556 (1089)
...+.+++...+ .+++|+++.|.+.++++.||+. .+|++||||++|+|++.+.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~ 140 (173)
T cd03015 75 FSHLAWRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDL 140 (173)
T ss_pred HHHHHHHHhhhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecCC
Confidence 222333333332 5689999999999999999996 6889999999999999986643
|
The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-16 Score=173.36 Aligned_cols=207 Identities=23% Similarity=0.391 Sum_probs=157.1
Q ss_pred cceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCc
Q 001380 659 PQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQH 738 (1089)
Q Consensus 659 P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~ 738 (1089)
|.|+++++..+.||++|..+++|+++++.++....+. +..|.+++++..++.+||++.+..
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~-------------------~~~~~G~~~~~~~g~l~v~~~~~~ 62 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID-------------------LPGPNGMAFDRPDGRLYVADSGGI 62 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE-------------------SSSEEEEEEECTTSEEEEEETTCE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe-------------------cCCCceEEEEccCCEEEEEEcCce
Confidence 5799999855569999999999999999999888765 235899999944469999997554
Q ss_pred EEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCC--------CeEEEEEcCCCCeEEE
Q 001380 739 QIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSES--------SSIRALNLKTGGSRLL 810 (1089)
Q Consensus 739 ~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~--------~~I~~~~~~~~~~~~~ 810 (1089)
..+|+.++.++.+...-. ....+..|++++++++| +||++++.. ++|++++++ +.+..+
T Consensus 63 --~~~d~~~g~~~~~~~~~~---------~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 63 --AVVDPDTGKVTVLADLPD---------GGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp --EEEETTTTEEEEEEEEET---------TCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred --EEEecCCCcEEEEeeccC---------CCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 445999998887764210 01256789999999998 799999865 579999988 555554
Q ss_pred ecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEEEeCCCCEEEEEeCC--CCeEE---EEeccCCCCCCCC
Q 001380 811 AGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADSYNHKIKKLDPA--SNRVS---TLAGIGKAGFKDG 884 (1089)
Q Consensus 811 ~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~~n~~I~~~d~~--~~~v~---t~~g~g~~g~~~g 884 (1089)
.. .+..|.||+++++|+ |||+|+.+++|.+++.+ ++.+. .+.....
T Consensus 130 ~~----------------------~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~------ 181 (246)
T PF08450_consen 130 AD----------------------GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG------ 181 (246)
T ss_dssp EE----------------------EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS------
T ss_pred ec----------------------CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCC------
Confidence 32 167899999999995 99999999999999874 33232 2321110
Q ss_pred cccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCCCceEEEEee
Q 001380 885 AALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKEEPELQTLEL 932 (1089)
Q Consensus 885 ~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~~~~~~~l~~ 932 (1089)
....|.|+++|.+|+||||+..+++|.++++++. .+..+..
T Consensus 182 -----~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~--~~~~i~~ 222 (246)
T PF08450_consen 182 -----GPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGK--LLREIEL 222 (246)
T ss_dssp -----SSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSC--EEEEEE-
T ss_pred -----CCcCCCcceEcCCCCEEEEEcCCCEEEEECCCcc--EEEEEcC
Confidence 1135999999999999999999999999999976 5566653
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx) | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.1e-18 Score=168.54 Aligned_cols=129 Identities=16% Similarity=0.142 Sum_probs=110.3
Q ss_pred CCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCC-CcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHH
Q 001380 426 TTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYC-CINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLE 504 (1089)
Q Consensus 426 ~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~w-C~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~ 504 (1089)
+|+++|+|++. +.+|+.+++ ++++||++||+||++| |++|+.++|.|++++++++ ++.+|+|+. ++.+
T Consensus 2 ~G~~aP~f~l~--~~~g~~~~l-~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~------d~~~ 70 (143)
T cd03014 2 VGDKAPDFTLV--TSDLSEVSL-ADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISA------DLPF 70 (143)
T ss_pred CCCCCCCcEEE--CCCCcEEeH-HHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEEC------CCHH
Confidence 68999999964 568999999 8899999999999988 6999999999999999984 799999975 4466
Q ss_pred HHHHHHHHcCC-ccceeecCC-hhHHHHhCCCc------eeEEEEECCCCcEEEEecCC--CchhhHHHHH
Q 001380 505 AIRNAVLRYGI-SHPVVNDGD-MNLWRELGVNS------WPTFAVVGPNGKLLAQLAGE--GHRKDLDDLV 565 (1089)
Q Consensus 505 ~~~~~~~~~~~-~~~v~~d~~-~~l~~~~~v~~------~Pt~~lid~~G~i~~~~~G~--~~~~~l~~~l 565 (1089)
..++|.+++++ +++++.|.. ..+++.||+.. .|++||||++|+|++.+.|. ....++++.|
T Consensus 71 ~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 71 AQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAAL 141 (143)
T ss_pred HHHHHHHhcCCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence 77889999997 789999986 99999999964 79999999999999998765 3344555544
|
Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based |
| >TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626 | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.3e-18 Score=170.67 Aligned_cols=119 Identities=16% Similarity=0.126 Sum_probs=98.9
Q ss_pred CCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEE------EEEeCCCCCChhcH----HHHHHHH
Q 001380 441 NTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTV------VGVHSAKFDNEKDL----EAIRNAV 510 (1089)
Q Consensus 441 ~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~v------i~v~~~~~~~~~~~----~~~~~~~ 510 (1089)
+.++++. ++++||++||+|||+||++|+.++|.|.++.++ ++.+ ++|+. +++. .-+++|+
T Consensus 48 ~y~~~~~-~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~----~~~~~~y~~t~~IN~-----dd~~~~~~~fVk~fi 117 (184)
T TIGR01626 48 VYQPWGS-AELAGKVRVVHHIAGRTSAKEXNASLIDAIKAA----KFPPVKYQTTTIINA-----DDAIVGTGMFVKSSA 117 (184)
T ss_pred cceeccH-HHcCCCEEEEEEEecCCChhhccchHHHHHHHc----CCCcccccceEEEEC-----ccchhhHHHHHHHHH
Confidence 3446666 899999999999999999999999999999543 6777 88864 4433 3456777
Q ss_pred HHcCCccc---eeecCChhHHHHhCCCceeEE-EEECCCCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 511 LRYGISHP---VVNDGDMNLWRELGVNSWPTF-AVVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 511 ~~~~~~~~---v~~d~~~~l~~~~~v~~~Pt~-~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
++.+..|| ++.|.++.++..|++.++|++ ||||++|+|++++.|..+.+++++ +..+++
T Consensus 118 e~~~~~~P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~-~~~li~ 180 (184)
T TIGR01626 118 KKGKKENPWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQT-VISLVN 180 (184)
T ss_pred HHhcccCCcceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHH-HHHHHH
Confidence 77788887 999999999999999999988 899999999999999999888877 444443
|
This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ. |
| >cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.9e-18 Score=170.02 Aligned_cols=123 Identities=18% Similarity=0.222 Sum_probs=110.6
Q ss_pred CCCCCCCCCccccCCCCCceeecccccCC-CEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhc
Q 001380 425 KTTPIVPEFPAKLDWLNTAPLQFRRDLKG-KVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKD 502 (1089)
Q Consensus 425 ~~g~~~P~f~~~~~~~~g~~~~l~~~~~g-k~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~ 502 (1089)
.+|+.+|+|.+. +.+|+.+++ ++++| |++||.|| ++||+.|+.++|.|++++++++++++.+|+|++ ++
T Consensus 2 ~~G~~~p~~~l~--~~~g~~v~l-~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~------d~ 72 (149)
T cd03018 2 EVGDKAPDFELP--DQNGQEVRL-SEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISV------DS 72 (149)
T ss_pred CCCCcCCCcEec--CCCCCEEeH-HHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecC------CC
Confidence 579999999965 458999999 99999 99999998 999999999999999999999988999999975 45
Q ss_pred HHHHHHHHHHcCCccceeecCC--hhHHHHhCCCc------eeEEEEECCCCcEEEEecCCC
Q 001380 503 LEAIRNAVLRYGISHPVVNDGD--MNLWRELGVNS------WPTFAVVGPNGKLLAQLAGEG 556 (1089)
Q Consensus 503 ~~~~~~~~~~~~~~~~v~~d~~--~~l~~~~~v~~------~Pt~~lid~~G~i~~~~~G~~ 556 (1089)
.+.+++|+++++++|+++.|.+ .++++.|++.. .|++||||++|++++.+.|..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 73 PFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred HHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEecCC
Confidence 6789999999999999999987 99999999973 348999999999999988875
|
AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers. |
| >TIGR03137 AhpC peroxiredoxin | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.7e-18 Score=175.17 Aligned_cols=122 Identities=22% Similarity=0.185 Sum_probs=101.8
Q ss_pred CCCCCCCCCccccCCCCCc--eeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChh
Q 001380 425 KTTPIVPEFPAKLDWLNTA--PLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEK 501 (1089)
Q Consensus 425 ~~g~~~P~f~~~~~~~~g~--~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~ 501 (1089)
.+|+.+|+|++.. ..+|+ .+++ ++++||++||+|| ++||++|..+++.|++++++|++.++.||+||. +
T Consensus 3 ~~G~~aP~f~l~~-~~~g~~~~~sl-~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~------D 74 (187)
T TIGR03137 3 LINTEIKPFKATA-YHNGEFVEVTD-EDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVST------D 74 (187)
T ss_pred ccCCcCCCcEeee-ccCCceeEecH-HHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeC------C
Confidence 5799999999642 12565 6777 8999999999999 999999999999999999999988999999986 2
Q ss_pred cHHHHHHHHHH----cCCccceeecCChhHHHHhCCC------ceeEEEEECCCCcEEEEecC
Q 001380 502 DLEAIRNAVLR----YGISHPVVNDGDMNLWRELGVN------SWPTFAVVGPNGKLLAQLAG 554 (1089)
Q Consensus 502 ~~~~~~~~~~~----~~~~~~v~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~G 554 (1089)
+.+..++|.+. .+++||++.|++..+++.|||. ..|++||||++|+|++.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~ 137 (187)
T TIGR03137 75 THFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEIT 137 (187)
T ss_pred CHHHHHHHHhhhhhccCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEe
Confidence 23334444333 3688999999999999999996 46999999999999998754
|
This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. |
| >PLN02954 phosphoserine phosphatase | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-17 Score=178.91 Aligned_cols=197 Identities=18% Similarity=0.198 Sum_probs=136.2
Q ss_pred CCCCCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhh-hcC--CCHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 001380 74 SKWGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLP-FMG--TGEANFLGGVASVKGVKGFDSEAAKKRF 150 (1089)
Q Consensus 74 ~~~~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (1089)
++|+++|+|+|||||||++++ .+..+++++|.....+++.. +.+ .+..+......... .... +.+
T Consensus 7 ~~~~~~k~viFDfDGTL~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~----~~~ 74 (224)
T PLN02954 7 ELWRSADAVCFDVDSTVCVDE-----GIDELAEFCGAGEAVAEWTAKAMGGSVPFEEALAARLSLF---KPSL----SQV 74 (224)
T ss_pred HHHccCCEEEEeCCCcccchH-----HHHHHHHHcCChHHHHHHHHHHHCCCCCHHHHHHHHHHHc---CCCH----HHH
Confidence 467889999999999999975 45778888888644444432 233 23333332222211 1111 122
Q ss_pred HHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCC-CCccEE---------EEcCC---
Q 001380 151 FEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPV-SMFDAI---------VSADA--- 217 (1089)
Q Consensus 151 ~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~-~~fd~i---------~~~~~--- 217 (1089)
.+.+. .. ...++||+.++|+.|+++|++++|+|++....++.+++.+|+.. .+|+.. .+.+.
T Consensus 75 ~~~~~-~~----~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~ 149 (224)
T PLN02954 75 EEFLE-KR----PPRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEP 149 (224)
T ss_pred HHHHH-Hc----cCCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCc
Confidence 22222 11 12689999999999999999999999999999999999999951 345321 11111
Q ss_pred ccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccC
Q 001380 218 FENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 218 ~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el 289 (1089)
....++|+++++.+++++|. ++|+||||+.+|+.+|+++|+.++...++....+.....+++++.++.++
T Consensus 150 ~~~~~~K~~~i~~~~~~~~~--~~~i~iGDs~~Di~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~el 219 (224)
T PLN02954 150 TSRSGGKAEAVQHIKKKHGY--KTMVMIGDGATDLEARKPGGADLFIGYGGVQVREAVAAKADWFVTDFQDL 219 (224)
T ss_pred ccCCccHHHHHHHHHHHcCC--CceEEEeCCHHHHHhhhcCCCCEEEecCCCccCHHHHhcCCEEECCHHHH
Confidence 12357889999999999986 68999999999999999989887655444333333456899999999877
|
|
| >TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-17 Score=170.70 Aligned_cols=122 Identities=20% Similarity=0.291 Sum_probs=103.7
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCCh---------------HhHHHHHHHCCCCCCCccEEEEc-----------CCc
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADR---------------IKVDANLAAAGLPVSMFDAIVSA-----------DAF 218 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~---------------~~~~~~l~~~gl~~~~fd~i~~~-----------~~~ 218 (1089)
.++||+.++|++|+++|++++|+||... ..+...++.+++. |+.++.+ ++.
T Consensus 26 ~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~i~~~~~~~~~~~~~~~~~ 102 (176)
T TIGR00213 26 EFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVD---LDGIYYCPHHPEGVEEFRQVC 102 (176)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCC---ccEEEECCCCCcccccccCCC
Confidence 6899999999999999999999999874 3445677777775 7776653 245
Q ss_pred cCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeE-EEEcCCCCHHHHhhcCCcEEecCcccC
Q 001380 219 ENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRC-IAVTTTLSEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 219 ~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~-i~V~~g~~~~~l~~~~~d~vi~dl~el 289 (1089)
...||+|++|.++++++|+++++|+||||+.+|+++|+++|+++ ++|.+|...+.....+|+++++++.+|
T Consensus 103 ~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG~~~~i~v~~g~~~~~~~~~~ad~~i~~~~el 174 (176)
T TIGR00213 103 DCRKPKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAKVKTNVLVRTGKPITPEAENIADWVLNSLADL 174 (176)
T ss_pred CCCCCCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCCCcEEEEEecCCcccccccccCCEEeccHHHh
Confidence 56899999999999999999999999999999999999999998 899998654444446799999999887
|
This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812). |
| >PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-17 Score=170.17 Aligned_cols=127 Identities=29% Similarity=0.409 Sum_probs=105.7
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCCh---------------HhHHHHHHHCCCCCCCccEEEEc-----CCccCCCCC
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADR---------------IKVDANLAAAGLPVSMFDAIVSA-----DAFENLKPA 224 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~---------------~~~~~~l~~~gl~~~~fd~i~~~-----~~~~~~KP~ 224 (1089)
.++||+.++|++|+++|++++|+||... +.+...++++|+. |+.++.+ ++....||+
T Consensus 29 ~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~---f~~i~~~~~~~~~~~~~~KP~ 105 (181)
T PRK08942 29 IPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRGGR---LDGIYYCPHHPEDGCDCRKPK 105 (181)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCc---cceEEECCCCCCCCCcCCCCC
Confidence 6799999999999999999999999762 3345567777773 7777654 345778999
Q ss_pred HHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCC--cEEecCcccCCHHHHHh
Q 001380 225 PDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASP--SLIRKEIGSVSLNDILT 296 (1089)
Q Consensus 225 ~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~--d~vi~dl~el~i~~ll~ 296 (1089)
|++|.++++++|+++++|+||||+.+|+++|+++|+.++++.+|.....+....+ ++++.++.++ .+++.
T Consensus 106 p~~~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~~~i~v~~g~~~~~~~~~~~~~~~ii~~l~el--~~~l~ 177 (181)
T PRK08942 106 PGMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVTPVLVRTGKGVTTLAEGAAPGTWVLDSLADL--PQALK 177 (181)
T ss_pred HHHHHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCeEEEEcCCCCchhhhcccCCCceeecCHHHH--HHHHH
Confidence 9999999999999999999999999999999999999999998875444445566 9999999887 55543
|
|
| >PRK10382 alkyl hydroperoxide reductase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-17 Score=170.42 Aligned_cols=123 Identities=16% Similarity=0.123 Sum_probs=105.0
Q ss_pred CCCCCCCCCCccccCCCCCc--eeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCCh
Q 001380 424 RKTTPIVPEFPAKLDWLNTA--PLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNE 500 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~--~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~ 500 (1089)
..+|+++|+|+.... .+|. .++| ++++||++||+|| +.||+.|..|++.|++++++|++.++.+|+||.
T Consensus 2 ~~~~~~~p~f~~~~~-~~g~~~~v~L-~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~------ 73 (187)
T PRK10382 2 SLINTKIKPFKNQAF-KNGEFIEVTE-KDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVST------ 73 (187)
T ss_pred CccCCcCCCcEEEEE-eCCcceEEEH-HHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeC------
Confidence 358999999997532 1344 6777 8999999999999 999999999999999999999988999999985
Q ss_pred hcHHHHHHHHHH----cCCccceeecCChhHHHHhCCC----ce--eEEEEECCCCcEEEEecC
Q 001380 501 KDLEAIRNAVLR----YGISHPVVNDGDMNLWRELGVN----SW--PTFAVVGPNGKLLAQLAG 554 (1089)
Q Consensus 501 ~~~~~~~~~~~~----~~~~~~v~~d~~~~l~~~~~v~----~~--Pt~~lid~~G~i~~~~~G 554 (1089)
++....++|.+. .+++||++.|++.++++.||+. ++ |++||||++|+|++.+..
T Consensus 74 D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~ 137 (187)
T PRK10382 74 DTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVT 137 (187)
T ss_pred CCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEe
Confidence 556666666655 4889999999999999999983 55 999999999999998654
|
|
| >PRK13190 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-17 Score=172.49 Aligned_cols=137 Identities=21% Similarity=0.273 Sum_probs=109.6
Q ss_pred CCCCCCCCCccccCCCCCceeecccccCCCEEEE-EEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcH
Q 001380 425 KTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVL-DFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDL 503 (1089)
Q Consensus 425 ~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll-~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~ 503 (1089)
.+|+.+|+|++. +.+| .+++ ++++||++|| +||++||+.|..|++.|++++++|+++++.+|+||+ +.....
T Consensus 3 ~vG~~aP~F~~~--~~~g-~v~l-~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~---D~~~~~ 75 (202)
T PRK13190 3 KLGQKAPDFTVN--TTKG-PIDL-SKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSV---DSIYSH 75 (202)
T ss_pred CCCCCCCCcEEe--cCCC-cEeH-HHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC---CCHHHH
Confidence 579999999975 3355 6899 8899998776 689999999999999999999999988999999987 333333
Q ss_pred HHH-HHHHHHcC--CccceeecCChhHHHHhCCC------ceeEEEEECCCCcEEEEec----CCCchhhHHHHHHHH
Q 001380 504 EAI-RNAVLRYG--ISHPVVNDGDMNLWRELGVN------SWPTFAVVGPNGKLLAQLA----GEGHRKDLDDLVEAA 568 (1089)
Q Consensus 504 ~~~-~~~~~~~~--~~~~v~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~----G~~~~~~l~~~l~~~ 568 (1089)
.+| +++.++++ ++||++.|.++++++.||+. .+|++||||++|+|++... +..+.+++.+.|+.+
T Consensus 76 ~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l 153 (202)
T PRK13190 76 IAWLRDIEERFGIKIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL 153 (202)
T ss_pred HHHHHhHHHhcCCCceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 444 34555666 57999999999999999985 5899999999999998752 233556665555554
|
|
| >cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-17 Score=158.81 Aligned_cols=109 Identities=20% Similarity=0.341 Sum_probs=95.2
Q ss_pred CCCccccCCCCCceeecccccC-CCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHH
Q 001380 431 PEFPAKLDWLNTAPLQFRRDLK-GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNA 509 (1089)
Q Consensus 431 P~f~~~~~~~~g~~~~l~~~~~-gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~ 509 (1089)
|+|.+ .+++|+.+++ ++++ ||++||+||++||++|+.++|.++++++++++ ++.++.++ +++.++++++
T Consensus 1 p~f~l--~~~~G~~~~l-~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~------~~~~~~~~~~ 70 (114)
T cd02967 1 PTFDL--TTIDGAPVRI-GGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD-WLDVVLAS------DGEKAEHQRF 70 (114)
T ss_pred CCcee--ecCCCCEEEc-ccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC-CcEEEEEe------CCCHHHHHHH
Confidence 67775 4569999999 8886 99999999999999999999999999998865 48888773 4577899999
Q ss_pred HHHcCCc-cceeecCChhHHHHhCCCceeEEEEECCCCcEEEE
Q 001380 510 VLRYGIS-HPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQ 551 (1089)
Q Consensus 510 ~~~~~~~-~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~ 551 (1089)
++++++. +|++.+ .++++.|++..+|++|+||++|+++++
T Consensus 71 ~~~~~~~~~p~~~~--~~~~~~~~~~~~P~~~vid~~G~v~~~ 111 (114)
T cd02967 71 LKKHGLEAFPYVLS--AELGMAYQVSKLPYAVLLDEAGVIAAK 111 (114)
T ss_pred HHHhCCCCCcEEec--HHHHhhcCCCCcCeEEEECCCCeEEec
Confidence 9999995 898874 468999999999999999999999876
|
mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.1e-16 Score=158.22 Aligned_cols=251 Identities=14% Similarity=0.214 Sum_probs=193.0
Q ss_pred CCCCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEE-EecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC
Q 001380 600 LKFPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQ-IGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE 677 (1089)
Q Consensus 600 l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~-i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~ 677 (1089)
-..|..|+.++ +|.+|+++.+.|.|-++|+. |+..+. ++.+ .+|+||.++|+|+ .||+|+.
T Consensus 61 G~ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~G---------------a~Phgiv~gpdg~-~Witd~~ 123 (353)
T COG4257 61 GSAPFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSG---------------ASPHGIVVGPDGS-AWITDTG 123 (353)
T ss_pred CCCccccccCC-CCceEEecCccccceecCCCCCceEEEecCCC---------------CCCceEEECCCCC-eeEecCc
Confidence 34677889987 89999999999999999997 665542 3322 3899999999999 9999998
Q ss_pred CCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCC
Q 001380 678 NHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDG 757 (1089)
Q Consensus 678 n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g 757 (1089)
+ .|.++|.++..++++.-....+.. +-.-..||+.| +||++.. ++---++|+..+.+++|.-
T Consensus 124 ~-aI~R~dpkt~evt~f~lp~~~a~~-------------nlet~vfD~~G-~lWFt~q-~G~yGrLdPa~~~i~vfpa-- 185 (353)
T COG4257 124 L-AIGRLDPKTLEVTRFPLPLEHADA-------------NLETAVFDPWG-NLWFTGQ-IGAYGRLDPARNVISVFPA-- 185 (353)
T ss_pred c-eeEEecCcccceEEeecccccCCC-------------cccceeeCCCc-cEEEeec-cccceecCcccCceeeecc--
Confidence 8 999999999999999765544332 34456789888 8888865 3333478888888888862
Q ss_pred ccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCcccccccc
Q 001380 758 YERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQ 837 (1089)
Q Consensus 758 ~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~ 837 (1089)
.+-..|+||++.++| .+|++....+.|-++++..+...++.-- +.+-+
T Consensus 186 ------------PqG~gpyGi~atpdG-svwyaslagnaiaridp~~~~aev~p~P-------------------~~~~~ 233 (353)
T COG4257 186 ------------PQGGGPYGICATPDG-SVWYASLAGNAIARIDPFAGHAEVVPQP-------------------NALKA 233 (353)
T ss_pred ------------CCCCCCcceEECCCC-cEEEEeccccceEEcccccCCcceecCC-------------------Ccccc
Confidence 122359999999999 9999999999999999886644333211 11122
Q ss_pred CceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEE
Q 001380 838 HPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRY 917 (1089)
Q Consensus 838 ~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~ 917 (1089)
.-..|..|+.|++|+++++++++.+|||++..-..+-- + ..-.+|..+.||..|++|.+|...+.|.+
T Consensus 234 gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypL---P---------gs~arpys~rVD~~grVW~sea~agai~r 301 (353)
T COG4257 234 GSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPL---P---------GSKARPYSMRVDRHGRVWLSEADAGAIGR 301 (353)
T ss_pred cccccccCccCcEEEeccCCceeeEeCcccccceeeeC---C---------CCCCCcceeeeccCCcEEeeccccCceee
Confidence 34567889999999999999999999998665333321 1 13367999999999999999999999999
Q ss_pred EeCCCCCceEEEEe
Q 001380 918 LDLNKEEPELQTLE 931 (1089)
Q Consensus 918 ~~~~~~~~~~~~l~ 931 (1089)
|++.+. +.+.+.
T Consensus 302 fdpeta--~ftv~p 313 (353)
T COG4257 302 FDPETA--RFTVLP 313 (353)
T ss_pred cCcccc--eEEEec
Confidence 999886 555554
|
|
| >TIGR00338 serB phosphoserine phosphatase SerB | Back alignment and domain information |
|---|
Probab=99.73 E-value=3e-17 Score=175.77 Aligned_cols=189 Identities=20% Similarity=0.169 Sum_probs=128.1
Q ss_pred CCCCCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCC---CHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 001380 74 SKWGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGT---GEANFLGGVASVKGVKGFDSEAAKKRF 150 (1089)
Q Consensus 74 ~~~~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (1089)
.+++++++|+||+||||+++. .+.++++.+|.+....++...... ............. .. ...+..
T Consensus 9 ~~~~~~k~iiFD~DGTL~~~~-----~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~-~~~~~~--- 77 (219)
T TIGR00338 9 PLLRSKKLVVFDMDSTLINAE-----TIDEIAKIAGVEEEVSEITERAMRGELDFKASLRERVALL--KG-LPVELL--- 77 (219)
T ss_pred hhhccCCEEEEeCcccCCCch-----HHHHHHHHhCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHh--CC-CCHHHH---
Confidence 345678999999999999975 456777778775443333221111 1222222211111 11 111111
Q ss_pred HHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEE-------EcC---CccC
Q 001380 151 FEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIV-------SAD---AFEN 220 (1089)
Q Consensus 151 ~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~-------~~~---~~~~ 220 (1089)
+.+.+ . ..++||+.++|+.|+++|++++|+||+....++.+++.+|+. .+|+..+ ++. ....
T Consensus 78 -~~~~~----~--~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~ 149 (219)
T TIGR00338 78 -KEVRE----N--LPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLD-AAFANRLEVEDGKLTGLVEGPIVD 149 (219)
T ss_pred -HHHHh----c--CCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCC-ceEeeEEEEECCEEEEEecCcccC
Confidence 11111 1 268999999999999999999999999999999999999997 7775322 111 1223
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCc
Q 001380 221 LKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEI 286 (1089)
Q Consensus 221 ~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl 286 (1089)
.+|++.+|+.+++++++++++|+||||+.+|+.+|+++|+.. .++. .+.+.+ .+++++.+.
T Consensus 150 ~~~k~~~~~~~~~~~~~~~~~~i~iGDs~~Di~aa~~ag~~i-~~~~---~~~~~~-~a~~~i~~~ 210 (219)
T TIGR00338 150 ASYKGKTLLILLRKEGISPENTVAVGDGANDLSMIKAAGLGI-AFNA---KPKLQQ-KADICINKK 210 (219)
T ss_pred CcccHHHHHHHHHHcCCCHHHEEEEECCHHHHHHHHhCCCeE-EeCC---CHHHHH-hchhccCCC
Confidence 577999999999999999999999999999999999999974 3332 233333 577776644
|
Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins. |
| >TIGR02661 MauD methylamine dehydrogenase accessory protein MauD | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-17 Score=170.27 Aligned_cols=132 Identities=17% Similarity=0.201 Sum_probs=107.5
Q ss_pred CCCCCCCCCCccccCCCCCceeecc-cccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhc
Q 001380 424 RKTTPIVPEFPAKLDWLNTAPLQFR-RDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKD 502 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~~~~l~-~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~ 502 (1089)
..+|+.+|+|+++ +.+|+.++++ .+++||++||+||++||++|+.++|.++++++++ ++.+++|+. ++
T Consensus 46 ~~vG~~aP~f~l~--d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---~~~vv~Is~------~~ 114 (189)
T TIGR02661 46 PDVGDAAPIFNLP--DFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---ETDVVMISD------GT 114 (189)
T ss_pred CCCCCcCCCcEec--CCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc---CCcEEEEeC------CC
Confidence 4689999999954 5699999984 3579999999999999999999999999998764 466788852 46
Q ss_pred HHHHHHHHHHcCCccceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 503 LEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 503 ~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
.+++++|+++++++++.+. .+.++++.|++..+|++|+||++|+++++.. ....+.++++++++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~-~~~~i~~~y~v~~~P~~~lID~~G~I~~~g~-~~~~~~le~ll~~l 178 (189)
T TIGR02661 115 PAEHRRFLKDHELGGERYV-VSAEIGMAFQVGKIPYGVLLDQDGKIRAKGL-TNTREHLESLLEAD 178 (189)
T ss_pred HHHHHHHHHhcCCCcceee-chhHHHHhccCCccceEEEECCCCeEEEccC-CCCHHHHHHHHHHH
Confidence 7789999999999986543 4678999999999999999999999998632 23456666666543
|
This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded. |
| >PRK13599 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.5e-17 Score=172.86 Aligned_cols=123 Identities=13% Similarity=0.126 Sum_probs=106.3
Q ss_pred CCCCCCCCCccccCCCCCceeecccccCCCEE-EEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcH
Q 001380 425 KTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVV-VLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDL 503 (1089)
Q Consensus 425 ~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~v-ll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~ 503 (1089)
.+|+++|+|++. +.+|+...+ ++++||++ |++||++||+.|..|++.|++++++|++.|+.+||||+ +.....
T Consensus 3 ~~Gd~aPdF~l~--t~~G~~~~~-~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~---D~~~~~ 76 (215)
T PRK13599 3 LLGEKFPSMEVV--TTQGVKRLP-EDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSV---DQVFSH 76 (215)
T ss_pred CCCCCCCCCEeE--CCCCcEecH-HHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeC---CCHHHH
Confidence 579999999964 448887776 88999985 67899999999999999999999999988999999987 445556
Q ss_pred HHHHHHHHH---cCCccceeecCChhHHHHhCCC-------ceeEEEEECCCCcEEEEec
Q 001380 504 EAIRNAVLR---YGISHPVVNDGDMNLWRELGVN-------SWPTFAVVGPNGKLLAQLA 553 (1089)
Q Consensus 504 ~~~~~~~~~---~~~~~~v~~d~~~~l~~~~~v~-------~~Pt~~lid~~G~i~~~~~ 553 (1089)
.+|.+++++ ++++||++.|.++++++.||+. ..|++||||++|+|++.+.
T Consensus 77 ~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~ 136 (215)
T PRK13599 77 IKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMY 136 (215)
T ss_pred HHHHHhHHHhcCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEE
Confidence 677777775 4788999999999999999984 6899999999999999854
|
|
| >TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-17 Score=171.08 Aligned_cols=161 Identities=21% Similarity=0.289 Sum_probs=119.5
Q ss_pred EEEEecCCcccCCchHHHHHHHHHHHHcCCC---CCH-----HhHhhhcC--CCHHH----HHHHHHhhcCCCCCCHHHH
Q 001380 81 AVLFDMDGVLCNSEEPSRRAAVDVFAEMGVE---VTV-----EDFLPFMG--TGEAN----FLGGVASVKGVKGFDSEAA 146 (1089)
Q Consensus 81 ~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~---~~~-----~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~ 146 (1089)
+|+||+||||+|++..+..++.+++++.+.. +.. .......+ ..... ....+...++... .. +.
T Consensus 1 ~viFD~DGTL~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~-~~ 78 (175)
T TIGR01493 1 AMVFDVYGTLVDVHGGVRACLAAIAPEGGAFSDLWRAKQQEYSWRRSLMGDRRAFPEDTVRALRYIADRLGLDA-EP-KY 78 (175)
T ss_pred CeEEecCCcCcccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHcCCCC-CH-HH
Confidence 5899999999999999999998888775421 111 11111212 11112 3334444455432 22 22
Q ss_pred HHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHH
Q 001380 147 KKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPD 226 (1089)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~ 226 (1089)
...+.+. +.. ..++||+.++|+ +++|+||+.+..++..++++++. .+||.++++++++..||+|+
T Consensus 79 ~~~~~~~----~~~---~~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~~l~-~~fd~v~~~~~~~~~KP~p~ 143 (175)
T TIGR01493 79 GERLRDA----YKN---LPPWPDSAAALA-------RVAILSNASHWAFDQFAQQAGLP-WYFDRAFSVDTVRAYKPDPV 143 (175)
T ss_pred HHHHHHH----Hhc---CCCCCchHHHHH-------HHhhhhCCCHHHHHHHHHHCCCH-HHHhhhccHhhcCCCCCCHH
Confidence 2222222 222 268999999998 38999999999999999999996 99999999999999999999
Q ss_pred HHHHHHHHcCCCCCcEEEEcCChhhHHHHHHc
Q 001380 227 IFLSASKILNVPTSECIVIEDALAGVQAAKAA 258 (1089)
Q Consensus 227 ~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~a 258 (1089)
+|..+++++|++|++|+||||+..|+.+|+++
T Consensus 144 ~f~~~~~~~~~~p~~~l~vgD~~~Di~~A~~~ 175 (175)
T TIGR01493 144 VYELVFDTVGLPPDRVLMVAAHQWDLIGARKF 175 (175)
T ss_pred HHHHHHHHHCCCHHHeEeEecChhhHHHHhcC
Confidence 99999999999999999999999999999864
|
The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o |
| >cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif | Back alignment and domain information |
|---|
Probab=99.72 E-value=4e-17 Score=157.60 Aligned_cols=121 Identities=27% Similarity=0.434 Sum_probs=107.0
Q ss_pred CCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHH
Q 001380 431 PEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAV 510 (1089)
Q Consensus 431 P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~ 510 (1089)
|+|++ .+++|+.+++ .+++||++||+||++||++|+.++|.|++++++ +.+++|+.+ .++.+++++++
T Consensus 1 p~f~l--~~~~g~~~~~-~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~----~~~~~~~~~~~ 68 (123)
T cd03011 1 PLFTA--TTLDGEQFDL-ESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-----YPVVSVALR----SGDDGAVARFM 68 (123)
T ss_pred CCcee--ecCCCCEeeH-HHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-----CCEEEEEcc----CCCHHHHHHHH
Confidence 67775 4669999999 889999999999999999999999999999877 456777652 34689999999
Q ss_pred HHcCCccceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHH
Q 001380 511 LRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDL 564 (1089)
Q Consensus 511 ~~~~~~~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~ 564 (1089)
++++++|+++.|.+.++++.|+|.++|+++|||++| +++++.|..+.+.+.+.
T Consensus 69 ~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~vid~~g-i~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 69 QKKGYGFPVINDPDGVISARWGVSVTPAIVIVDPGG-IVFVTTGVTSEWGLRLR 121 (123)
T ss_pred HHcCCCccEEECCCcHHHHhCCCCcccEEEEEcCCC-eEEEEeccCCHHHHHhh
Confidence 999999999999999999999999999999999999 99999999888877543
|
The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. |
| >PTZ00137 2-Cys peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.3e-17 Score=171.59 Aligned_cols=150 Identities=18% Similarity=0.201 Sum_probs=112.0
Q ss_pred CCCCCCCCCCccccCCCCC--ceeeccccc-CCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCC
Q 001380 424 RKTTPIVPEFPAKLDWLNT--APLQFRRDL-KGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDN 499 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g--~~~~l~~~~-~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~ 499 (1089)
..+|+++|+|++... .+| ..+++ +++ +||++||+|| +.||++|..|++.|++++++|+++|++||+||. +.
T Consensus 68 ~~vGd~aPdF~l~~~-~~g~~~~vsL-sd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~---Ds 142 (261)
T PTZ00137 68 SLVGKLMPSFKGTAL-LNDDLVQFNS-SDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSV---DS 142 (261)
T ss_pred ccCCCCCCCCEeecc-cCCCceEEeH-HHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC---CC
Confidence 468999999996531 244 46899 777 8999888888 899999999999999999999999999999987 22
Q ss_pred hhcHHHHHH-HHHH---cCCccceeecCChhHHHHhCCC-----ceeEEEEECCCCcEEEEecCC----CchhhHHHHHH
Q 001380 500 EKDLEAIRN-AVLR---YGISHPVVNDGDMNLWRELGVN-----SWPTFAVVGPNGKLLAQLAGE----GHRKDLDDLVE 566 (1089)
Q Consensus 500 ~~~~~~~~~-~~~~---~~~~~~v~~d~~~~l~~~~~v~-----~~Pt~~lid~~G~i~~~~~G~----~~~~~l~~~l~ 566 (1089)
.....+|.+ ..++ .+++||++.|.+.+++++||+. ..|++||||++|+|++.+... .+.+++.+.|+
T Consensus 143 ~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~ 222 (261)
T PTZ00137 143 PFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFD 222 (261)
T ss_pred HHHHHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 223344443 2333 5788999999999999999985 589999999999999986322 23444444443
Q ss_pred HHHHHhccccccc
Q 001380 567 AALLFYGKKKLLD 579 (1089)
Q Consensus 567 ~~l~~~~~~~~l~ 579 (1089)
.++...+.|.+.
T Consensus 223 -alq~~~~~g~~c 234 (261)
T PTZ00137 223 -AVQFAEKTGNVC 234 (261)
T ss_pred -HhchhhhcCCCc
Confidence 334444444443
|
|
| >PRK15000 peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-16 Score=166.86 Aligned_cols=148 Identities=23% Similarity=0.297 Sum_probs=111.3
Q ss_pred CCCCCCCCCccccCCCCCce---eeccccc-CCCEEEEEEec-CCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCC
Q 001380 425 KTTPIVPEFPAKLDWLNTAP---LQFRRDL-KGKVVVLDFWT-YCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDN 499 (1089)
Q Consensus 425 ~~g~~~P~f~~~~~~~~g~~---~~l~~~~-~gk~vll~Fwa-~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~ 499 (1089)
.+|+++|+|++....-+|+. +++ +++ +||++||+||+ .||+.|+.|++.|++++++|+++++.||+||+ +.
T Consensus 3 ~vg~~aPdF~~~~~~~~g~~~~~~~l-~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~---D~ 78 (200)
T PRK15000 3 LVTRQAPDFTAAAVLGSGEIVDKFNF-KQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSF---DS 78 (200)
T ss_pred cCCCcCCCCEeecccCCCceeeeeeH-HHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC---CC
Confidence 47999999996532223443 455 444 89999999998 59999999999999999999988999999987 33
Q ss_pred hhcHHHHHH-HHHHcC---CccceeecCChhHHHHhCCC------ceeEEEEECCCCcEEEEecCCC----chhhHHHHH
Q 001380 500 EKDLEAIRN-AVLRYG---ISHPVVNDGDMNLWRELGVN------SWPTFAVVGPNGKLLAQLAGEG----HRKDLDDLV 565 (1089)
Q Consensus 500 ~~~~~~~~~-~~~~~~---~~~~v~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~G~~----~~~~l~~~l 565 (1089)
......|.+ +.++.| ++||++.|++.++++.||+. .+|++||||++|+|++.+.+.. +.+++.+.|
T Consensus 79 ~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l 158 (200)
T PRK15000 79 EFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMV 158 (200)
T ss_pred HHHHHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHH
Confidence 344455544 445555 58999999999999999997 7999999999999999877643 344444444
Q ss_pred HHHHHHhccccc
Q 001380 566 EAALLFYGKKKL 577 (1089)
Q Consensus 566 ~~~l~~~~~~~~ 577 (1089)
+. ++...+.|.
T Consensus 159 ~a-l~~~~~~~~ 169 (200)
T PRK15000 159 DA-LQFHEEHGD 169 (200)
T ss_pred HH-hhhHHhcCC
Confidence 43 343333343
|
|
| >PRK13191 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.3e-17 Score=169.48 Aligned_cols=138 Identities=14% Similarity=0.154 Sum_probs=110.1
Q ss_pred CCCCCCCCCCccccCCCCCceeecccccCCCEEEE-EEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhc
Q 001380 424 RKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVL-DFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKD 502 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll-~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~ 502 (1089)
..+|+.+|+|++.. .+|+ +.+.++++||++|| +||++||+.|..|++.|++++++|+++|++||+||+ +....
T Consensus 7 ~~iG~~aPdF~l~~--~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~---Ds~~~ 80 (215)
T PRK13191 7 PLIGEKFPEMEVIT--THGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSV---DSNIS 80 (215)
T ss_pred ccCCCcCCCCEeec--CCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEEC---CCHHH
Confidence 45899999999653 4675 55535689997766 888999999999999999999999988999999997 44455
Q ss_pred HHHHHHHHHH---cCCccceeecCChhHHHHhCCC-------ceeEEEEECCCCcEEEEecCCC----chhhHHHHHHH
Q 001380 503 LEAIRNAVLR---YGISHPVVNDGDMNLWRELGVN-------SWPTFAVVGPNGKLLAQLAGEG----HRKDLDDLVEA 567 (1089)
Q Consensus 503 ~~~~~~~~~~---~~~~~~v~~d~~~~l~~~~~v~-------~~Pt~~lid~~G~i~~~~~G~~----~~~~l~~~l~~ 567 (1089)
..+|.+++++ ++++||++.|.++++++.||+. ..|++||||++|+|++.+.+.. +.+++.+.|+.
T Consensus 81 h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~a 159 (215)
T PRK13191 81 HIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRA 159 (215)
T ss_pred HHHHHhhHHHhcCCCCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 5567777764 5788999999999999999974 4799999999999999865432 34444444443
|
|
| >PRK06769 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.1e-17 Score=165.99 Aligned_cols=124 Identities=19% Similarity=0.277 Sum_probs=102.1
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChH--------hHHHHHHHCCCCCCCccEEE-EcCCccCCCCCHHHHHHHHHHc
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRI--------KVDANLAAAGLPVSMFDAIV-SADAFENLKPAPDIFLSASKIL 235 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~--------~~~~~l~~~gl~~~~fd~i~-~~~~~~~~KP~~~~~~~~l~~l 235 (1089)
.++||+.++|++|+++|++++|+||.... .....++.+|+. .+|..+. ++++....||+|++|.++++++
T Consensus 28 ~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~-~~~~~~~~~~~~~~~~KP~p~~~~~~~~~l 106 (173)
T PRK06769 28 TLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFD-DIYLCPHKHGDGCECRKPSTGMLLQAAEKH 106 (173)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcC-EEEECcCCCCCCCCCCCCCHHHHHHHHHHc
Confidence 57999999999999999999999997531 234447777775 4433222 4566678999999999999999
Q ss_pred CCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCH-------HHHhhcCCcEEecCcccC
Q 001380 236 NVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSE-------ERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 236 gv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~-------~~l~~~~~d~vi~dl~el 289 (1089)
+++|++|+||||+.+|+++|+++||.+|+|.+|... +.+....|++++.++.++
T Consensus 107 ~~~p~~~i~IGD~~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~l~~~~~~~~~~~~~el 167 (173)
T PRK06769 107 GLDLTQCAVIGDRWTDIVAAAKVNATTILVRTGAGYDALHTYRDKWAHIEPNYIAENFEDA 167 (173)
T ss_pred CCCHHHeEEEcCCHHHHHHHHHCCCeEEEEecCCCchhhhhhhcccccCCCcchhhCHHHH
Confidence 999999999999999999999999999999997632 345556799999998887
|
|
| >TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase | Back alignment and domain information |
|---|
Probab=99.70 E-value=6e-16 Score=162.81 Aligned_cols=185 Identities=16% Similarity=0.160 Sum_probs=125.9
Q ss_pred ceEEEEecCCcccCCch-------HHHHHHHHHHHHcCCCCCHHhHhhhcCCC-HHHHHHHHHhhcC--CCCCCHHHHHH
Q 001380 79 VSAVLFDMDGVLCNSEE-------PSRRAAVDVFAEMGVEVTVEDFLPFMGTG-EANFLGGVASVKG--VKGFDSEAAKK 148 (1089)
Q Consensus 79 ~k~ViFD~DGTL~d~~~-------~~~~a~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~ 148 (1089)
+++|+||+.||++...- ..++.+.+.++.+.-+...+++..+.+.. ...+...+..... ........+-.
T Consensus 1 ~~~~l~diegt~~~isfv~~~lfpy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~k~~~lk~lqg 80 (220)
T TIGR01691 1 IKNVLLDIEGTTGSISFVHDVLFPYAASRLESFVNDNYESTIVENLRELGKTPEELILLRKLHAEMDKDRKATPLKTLQG 80 (220)
T ss_pred CCEEEEecCCCcccHHHHHhhhhHHHHHHHHHHHHHhCCCHHHHHHHHhccCCcHHHHHHHHHHHHHcCCCcchHHHHHH
Confidence 47899999999997442 12333444444433222333333333321 1233333332221 11112222222
Q ss_pred H-HHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHC---CCCCCCccEEEEcCCccCCCCC
Q 001380 149 R-FFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAA---GLPVSMFDAIVSADAFENLKPA 224 (1089)
Q Consensus 149 ~-~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~---gl~~~~fd~i~~~~~~~~~KP~ 224 (1089)
. |.+.|... .....++||+.++|++|+++|++++|+||++....+..++.. ++. .+|+.++... . ..||+
T Consensus 81 ~iw~~~Y~~~---~~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~-~~f~~~fd~~-~-g~KP~ 154 (220)
T TIGR01691 81 LIWRQGYESG---ELTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLT-PYFSGYFDTT-V-GLKTE 154 (220)
T ss_pred HHHHHHHhcC---CcccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchh-hhcceEEEeC-c-ccCCC
Confidence 2 33333221 223479999999999999999999999999998888888876 564 6788776532 3 36999
Q ss_pred HHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC
Q 001380 225 PDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL 269 (1089)
Q Consensus 225 ~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~ 269 (1089)
|++|.++++++|++|++|+||||+..|+++|+++||+++++.++.
T Consensus 155 p~~y~~i~~~lgv~p~e~lfVgDs~~Di~AA~~AG~~ti~v~r~g 199 (220)
T TIGR01691 155 AQSYVKIAGQLGSPPREILFLSDIINELDAARKAGLHTGQLVRPG 199 (220)
T ss_pred HHHHHHHHHHhCcChhHEEEEeCCHHHHHHHHHcCCEEEEEECCC
Confidence 999999999999999999999999999999999999999998754
|
This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-14 Score=166.14 Aligned_cols=279 Identities=17% Similarity=0.296 Sum_probs=189.0
Q ss_pred CCCCCceEEEeecCCeEEEEeC---CCCEEEEEeC--CCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEE
Q 001380 599 PLKFPGKLAIDILNNRLFISDS---NHNRIVVTDL--DGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYV 673 (1089)
Q Consensus 599 ~l~~P~~vavd~~~g~L~vsd~---~~~~I~~~~~--~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyV 673 (1089)
....|.-+++++.++.||+++. ..+.|..+.. +...+..+...... -..|..|++++++++|||
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~-----------g~~p~~i~~~~~g~~l~v 103 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSG-----------GSSPCHIAVDPDGRFLYV 103 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEES-----------SSCEEEEEECTTSSEEEE
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccC-----------CCCcEEEEEecCCCEEEE
Confidence 4467889999999999999988 4677777654 41233333222111 137999999999999999
Q ss_pred EECCCCEEEEEECCC-CeEEEEec----CCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCC
Q 001380 674 ADTENHALREIDFVN-DTVRTLAG----NGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDG 748 (1089)
Q Consensus 674 aD~~n~~I~~~d~~~-g~v~~~ag----~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g 748 (1089)
|+...+.|..++++. |.+..... .|. + .....+.-..|+.+.++|+|+.+|++|.+.++|+.|+.+..
T Consensus 104 any~~g~v~v~~l~~~g~l~~~~~~~~~~g~-g------~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~ 176 (345)
T PF10282_consen 104 ANYGGGSVSVFPLDDDGSLGEVVQTVRHEGS-G------PNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDD 176 (345)
T ss_dssp EETTTTEEEEEEECTTSEEEEEEEEEESEEE-E------SSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TT
T ss_pred EEccCCeEEEEEccCCcccceeeeecccCCC-C------CcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCC
Confidence 999999998888865 55554421 111 0 11123445689999999999999999999999999987654
Q ss_pred e--EEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcC--CCCeEEEecCCCCCCCCcccc
Q 001380 749 V--TRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLK--TGGSRLLAGGDPIFPDNLFKF 824 (1089)
Q Consensus 749 ~--~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~--~~~~~~~~g~~~~~~~~l~~~ 824 (1089)
. +....... ...-..|+.|+++++|+++||++..+++|..++.. ++..+.+..-. ..+.
T Consensus 177 ~~~l~~~~~~~-----------~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~-~~~~----- 239 (345)
T PF10282_consen 177 TGKLTPVDSIK-----------VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIS-TLPE----- 239 (345)
T ss_dssp S-TEEEEEEEE-----------CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE-SCET-----
T ss_pred CceEEEeeccc-----------cccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEee-eccc-----
Confidence 4 43311100 01124699999999999999999999999999877 44333221100 0000
Q ss_pred CCCCCccccccccCceEEEEccCCc-EEEEeCCCCEEEEEeC--CCCeEEEEeccCCCCCCCCcccccccCCCceEEEcc
Q 001380 825 GDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADSYNHKIKKLDP--ASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQ 901 (1089)
Q Consensus 825 g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~~n~~I~~~d~--~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~ 901 (1089)
+ ..+ -..|.+|++++||+ |||++.+.+.|..|+. +++.++.+..... .-..|.++++++
T Consensus 240 ~-~~~------~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~-----------~G~~Pr~~~~s~ 301 (345)
T PF10282_consen 240 G-FTG------ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT-----------GGKFPRHFAFSP 301 (345)
T ss_dssp T-SCS------SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE-----------SSSSEEEEEE-T
T ss_pred c-ccc------cCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC-----------CCCCccEEEEeC
Confidence 0 001 13799999999994 9999999999888764 6677766643211 124599999999
Q ss_pred CCc-EEEEECCCCEEEEEeCCCCCceEEEE
Q 001380 902 NGN-LFIADTNNNIIRYLDLNKEEPELQTL 930 (1089)
Q Consensus 902 ~G~-lyVad~~n~~I~~~~~~~~~~~~~~l 930 (1089)
+|+ |||++...+.|.+|+.+..+..+..+
T Consensus 302 ~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 302 DGRYLYVANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred CCCEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence 996 99999999999999886554344443
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-16 Score=167.80 Aligned_cols=135 Identities=18% Similarity=0.263 Sum_probs=105.5
Q ss_pred CCCCCCCCccccCCCCCceeecccccCC-CEE-EEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcH
Q 001380 426 TTPIVPEFPAKLDWLNTAPLQFRRDLKG-KVV-VLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDL 503 (1089)
Q Consensus 426 ~g~~~P~f~~~~~~~~g~~~~l~~~~~g-k~v-ll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~ 503 (1089)
+|+.+|+|++.. .+| .+++ ++++| |++ |++||++||+.|..+++.|++++++|++.++.+|+||+ +.....
T Consensus 1 vG~~aP~F~~~~--~~g-~~~l-~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~---D~~~~~ 73 (203)
T cd03016 1 LGDTAPNFEADT--THG-PIKF-HDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSV---DSVESH 73 (203)
T ss_pred CcCCCCCeEEec--CCC-cEeH-HHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEEC---CCHHHH
Confidence 588999999653 356 5888 88888 765 55899999999999999999999999988999999987 333334
Q ss_pred HHHHHHHHH---cCCccceeecCChhHHHHhCCC--------ceeEEEEECCCCcEEEEecCCC----chhhHHHHHHH
Q 001380 504 EAIRNAVLR---YGISHPVVNDGDMNLWRELGVN--------SWPTFAVVGPNGKLLAQLAGEG----HRKDLDDLVEA 567 (1089)
Q Consensus 504 ~~~~~~~~~---~~~~~~v~~d~~~~l~~~~~v~--------~~Pt~~lid~~G~i~~~~~G~~----~~~~l~~~l~~ 567 (1089)
.+|.+.+++ .+++||++.|.++++++.||+. ..|++||||++|+|++.+.+.. +.+++.+.|+.
T Consensus 74 ~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~ 152 (203)
T cd03016 74 IKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDA 152 (203)
T ss_pred HHHHhhHHHhcCCCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 444443333 6899999999999999999985 2467999999999999976643 34445455544
|
They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an |
| >cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-16 Score=160.17 Aligned_cols=117 Identities=23% Similarity=0.334 Sum_probs=100.2
Q ss_pred CCCCCccccCCCCCceeecccccC-CCEEEE-EEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHH
Q 001380 429 IVPEFPAKLDWLNTAPLQFRRDLK-GKVVVL-DFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAI 506 (1089)
Q Consensus 429 ~~P~f~~~~~~~~g~~~~l~~~~~-gk~vll-~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~ 506 (1089)
.+|+|++ .+++|+.+++ +++. +|++|| +||++||++|+.++|.|+++++++++.++.+|+|+. ++.+..
T Consensus 1 ~~p~f~l--~~~~g~~~~l-~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~------~~~~~~ 71 (149)
T cd02970 1 TAPDFEL--PDAGGETVTL-SALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGP------ESPEKL 71 (149)
T ss_pred CCCCccc--cCCCCCEEch-HHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeC------CCHHHH
Confidence 3789985 4569999999 6664 465555 456999999999999999999999988999999975 334556
Q ss_pred HHHHHHcCCccceeecCChhHHHHhCCC-----------------------------ceeEEEEECCCCcEEEEecC
Q 001380 507 RNAVLRYGISHPVVNDGDMNLWRELGVN-----------------------------SWPTFAVVGPNGKLLAQLAG 554 (1089)
Q Consensus 507 ~~~~~~~~~~~~v~~d~~~~l~~~~~v~-----------------------------~~Pt~~lid~~G~i~~~~~G 554 (1089)
.++.++++++||++.|++..+++.||+. .+|++||||++|+|++.+.|
T Consensus 72 ~~~~~~~~~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 72 EAFDKGKFLPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred HHHHHhcCCCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 6899999999999999999999999984 79999999999999999876
|
Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins. |
| >cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-16 Score=157.92 Aligned_cols=120 Identities=21% Similarity=0.259 Sum_probs=107.7
Q ss_pred CCCCCccccCCCCCceeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHH
Q 001380 429 IVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIR 507 (1089)
Q Consensus 429 ~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~ 507 (1089)
.+|+|++ .+++|+.+++ ++++||++||+|| +.||+.|..++|.|++++++|++.++.+|+|+. ++.+.++
T Consensus 1 ~~p~f~l--~~~~g~~~~l-~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~------d~~~~~~ 71 (140)
T cd02971 1 KAPDFTL--PATDGGEVSL-SDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSV------DSPFSHK 71 (140)
T ss_pred CCCCcee--ccCCCcEEeh-HHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeC------CCHHHHH
Confidence 3788985 4669999999 8999999999999 789999999999999999999877899999975 4667899
Q ss_pred HHHHHc-CCccceeecCChhHHHHhCCCcee---------EEEEECCCCcEEEEecCCCc
Q 001380 508 NAVLRY-GISHPVVNDGDMNLWRELGVNSWP---------TFAVVGPNGKLLAQLAGEGH 557 (1089)
Q Consensus 508 ~~~~~~-~~~~~v~~d~~~~l~~~~~v~~~P---------t~~lid~~G~i~~~~~G~~~ 557 (1089)
++++++ +.+|+++.|++..+++.||+...| ++||||++|+|++++.|...
T Consensus 72 ~~~~~~~~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 72 AWAEKEGGLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred HHHhcccCCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 999999 999999999999999999988655 89999999999999988754
|
PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a |
| >cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.1e-17 Score=157.29 Aligned_cols=105 Identities=24% Similarity=0.324 Sum_probs=89.5
Q ss_pred CCc-eeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCC--CEEEEEEeCCCCCChhcHHHHHHHHHHcCCcc
Q 001380 441 NTA-PLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDM--PFTVVGVHSAKFDNEKDLEAIRNAVLRYGISH 517 (1089)
Q Consensus 441 ~g~-~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~--~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (1089)
+|+ ++++ ++++||++||+||++||++|+.++|.|++++++++++ ++.+++|++ +++.+.+++++++++ .|
T Consensus 5 ~~~~~v~l-~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~-----d~~~~~~~~~~~~~~-~~ 77 (132)
T cd02964 5 DGEGVVPV-SALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSR-----DRSEESFNEYFSEMP-PW 77 (132)
T ss_pred cCCccccH-HHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEec-----CCCHHHHHHHHhcCC-Ce
Confidence 455 8999 9999999999999999999999999999999999864 799999975 456788999999998 65
Q ss_pred cee--ec--CChhHHHHhCCCceeEEEEECCCCcEEEEe
Q 001380 518 PVV--ND--GDMNLWRELGVNSWPTFAVVGPNGKLLAQL 552 (1089)
Q Consensus 518 ~v~--~d--~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~ 552 (1089)
..+ .| ....+++.|+|.++|+++|||++|+|+.+.
T Consensus 78 ~~~~~~d~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 78 LAVPFEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred EeeccCcHHHHHHHHHHcCCCCCCEEEEECCCCCEEchh
Confidence 433 22 235788899999999999999999998763
|
Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. |
| >PRK11133 serB phosphoserine phosphatase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.1e-16 Score=174.58 Aligned_cols=199 Identities=14% Similarity=0.133 Sum_probs=141.5
Q ss_pred CCCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 001380 76 WGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYL 155 (1089)
Q Consensus 76 ~~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (1089)
.+.+++|+|||||||+.. +++.++++.+|.+.....++.....+...+.+.+..+........+...+.+ .
T Consensus 107 ~~~~~LvvfDmDGTLI~~-----e~i~eia~~~g~~~~v~~it~~~m~Geldf~esl~~rv~~l~g~~~~il~~v----~ 177 (322)
T PRK11133 107 LRTPGLLVMDMDSTAIQI-----ECIDEIAKLAGTGEEVAEVTERAMRGELDFEASLRQRVATLKGADANILQQV----R 177 (322)
T ss_pred ccCCCEEEEECCCCCcch-----HHHHHHHHHhCCchHHHHHHHHHHcCCcCHHHHHHHHHHHhCCCCHHHHHHH----H
Confidence 367899999999999943 4788888888887766666665555544444443332221111222222222 1
Q ss_pred HHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCcc-------EEEEcC---CccCCCCCH
Q 001380 156 DKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFD-------AIVSAD---AFENLKPAP 225 (1089)
Q Consensus 156 ~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd-------~i~~~~---~~~~~KP~~ 225 (1089)
+. .+++||++++|+.|++.|++++|+|+++....+.+++++++. ..+. ..+++. +....|||+
T Consensus 178 ~~------l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld-~~~an~lei~dg~ltg~v~g~iv~~k~K~ 250 (322)
T PRK11133 178 EN------LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLD-AAVANELEIMDGKLTGNVLGDIVDAQYKA 250 (322)
T ss_pred Hh------CCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCC-eEEEeEEEEECCEEEeEecCccCCcccHH
Confidence 11 278999999999999999999999999999999999999986 4332 222222 233579999
Q ss_pred HHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhcc
Q 001380 226 DIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTGG 298 (1089)
Q Consensus 226 ~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~~ 298 (1089)
+.++++++++|+++++|++|||+.+|+.|++.||+..++ + ..+.++ ..+++++. ..+| ..+|..+
T Consensus 251 ~~L~~la~~lgi~~~qtIaVGDg~NDl~m~~~AGlgiA~-n---Akp~Vk-~~Ad~~i~-~~~l--~~~l~~~ 315 (322)
T PRK11133 251 DTLTRLAQEYEIPLAQTVAIGDGANDLPMIKAAGLGIAY-H---AKPKVN-EQAQVTIR-HADL--MGVLCIL 315 (322)
T ss_pred HHHHHHHHHcCCChhhEEEEECCHHHHHHHHHCCCeEEe-C---CCHHHH-hhCCEEec-CcCH--HHHHHHh
Confidence 999999999999999999999999999999999986655 2 334443 47888886 4344 5555554
|
|
| >cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-16 Score=159.07 Aligned_cols=120 Identities=25% Similarity=0.331 Sum_probs=104.2
Q ss_pred CCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcc-hhhhhhhHHHHHHHcCCCC---EEEEEEeCCCCCCh-hcH
Q 001380 429 IVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCIN-CMHVLPDLEFLEKKYKDMP---FTVVGVHSAKFDNE-KDL 503 (1089)
Q Consensus 429 ~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~-C~~~~p~l~~l~~~~~~~~---v~vi~v~~~~~~~~-~~~ 503 (1089)
.+|+|++. +.+|+++++ .+++||++||+||++||++ |..+++.|+++++++++.+ +.+|+|+.+ .+ +++
T Consensus 1 ~~p~f~l~--~~~g~~~~l-~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d---~~~d~~ 74 (142)
T cd02968 1 IGPDFTLT--DQDGRPVTL-SDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD---PERDTP 74 (142)
T ss_pred CCCceEEE--cCCCCEEch-HHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC---CCCCCH
Confidence 37899864 459999999 8889999999999999998 9999999999999998754 999999873 33 678
Q ss_pred HHHHHHHHHcCCccceeecCC---hhHHHHhCCCce--------------eEEEEECCCCcEEEEecC
Q 001380 504 EAIRNAVLRYGISHPVVNDGD---MNLWRELGVNSW--------------PTFAVVGPNGKLLAQLAG 554 (1089)
Q Consensus 504 ~~~~~~~~~~~~~~~v~~d~~---~~l~~~~~v~~~--------------Pt~~lid~~G~i~~~~~G 554 (1089)
+.+++++++++.+|+++.|+. ..+++.||+... |++||||++|+|+..+.|
T Consensus 75 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~~ 142 (142)
T cd02968 75 EVLKAYAKAFGPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYGG 142 (142)
T ss_pred HHHHHHHHHhCCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeecC
Confidence 899999999999999999875 689999997644 579999999999988754
|
Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti |
| >cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.9e-17 Score=156.98 Aligned_cols=109 Identities=20% Similarity=0.302 Sum_probs=90.8
Q ss_pred CCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCC--CEEEEEEeCCCCCChhcHHHHHHHHHHcCC
Q 001380 438 DWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDM--PFTVVGVHSAKFDNEKDLEAIRNAVLRYGI 515 (1089)
Q Consensus 438 ~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~--~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~ 515 (1089)
.+.+|+.+++ ++++||+|||+||++||++|+.++|.|+++++++++. ++.+++|+. +++.+.+++++++++.
T Consensus 4 ~~~~G~~v~l-~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~-----d~~~~~~~~~~~~~~~ 77 (131)
T cd03009 4 LRNDGGKVPV-SSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISW-----DRDEESFNDYFSKMPW 77 (131)
T ss_pred cccCCCCccH-HHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEEC-----CCCHHHHHHHHHcCCe
Confidence 3569999999 8999999999999999999999999999999998754 799999976 4456788888887652
Q ss_pred c-ccee-ecCChhHHHHhCCCceeEEEEECCCCcEEEEe
Q 001380 516 S-HPVV-NDGDMNLWRELGVNSWPTFAVVGPNGKLLAQL 552 (1089)
Q Consensus 516 ~-~~v~-~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~ 552 (1089)
. ++.. .|....+++.|+|.++|+++|||++|+++.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 116 (131)
T cd03009 78 LAVPFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTD 116 (131)
T ss_pred eEcccCCHHHHHHHHHHcCCCCCCEEEEECCCCCEEccc
Confidence 1 2221 24456899999999999999999999998763
|
TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the |
| >PRK13189 peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.5e-16 Score=164.56 Aligned_cols=138 Identities=17% Similarity=0.237 Sum_probs=106.4
Q ss_pred CCCCCCCCCCccccCCCCCceeecccccCCCEEE-EEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhc
Q 001380 424 RKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVV-LDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKD 502 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vl-l~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~ 502 (1089)
..+|+.+|+|++.. .+|. +++.+.++||++| ++||++||+.|..|++.|++++++|++.++.||+||+ +....
T Consensus 9 ~~vG~~aPdF~~~~--~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~---D~~~~ 82 (222)
T PRK13189 9 PLIGDKFPEFEVKT--THGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSI---DQVFS 82 (222)
T ss_pred ccCCCcCCCcEeEc--CCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEC---CCHHH
Confidence 46899999999653 4664 6773446999655 5788999999999999999999999988999999987 33334
Q ss_pred HHHHHHHHHH---cCCccceeecCChhHHHHhCCC-------ceeEEEEECCCCcEEEEecCCC----chhhHHHHHHH
Q 001380 503 LEAIRNAVLR---YGISHPVVNDGDMNLWRELGVN-------SWPTFAVVGPNGKLLAQLAGEG----HRKDLDDLVEA 567 (1089)
Q Consensus 503 ~~~~~~~~~~---~~~~~~v~~d~~~~l~~~~~v~-------~~Pt~~lid~~G~i~~~~~G~~----~~~~l~~~l~~ 567 (1089)
..+|.+...+ .+++||++.|.+++++++||+. .+|++||||++|+|++.+.+.. +.+++.+.|+.
T Consensus 83 h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~a 161 (222)
T PRK13189 83 HIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKA 161 (222)
T ss_pred HHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 4455443332 3578999999999999999985 5799999999999998865433 34555555554
|
|
| >PRK13728 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.1e-16 Score=155.90 Aligned_cols=120 Identities=20% Similarity=0.205 Sum_probs=101.0
Q ss_pred CCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHH
Q 001380 426 TTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEA 505 (1089)
Q Consensus 426 ~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~ 505 (1089)
.....|+|++ . +|+.+++ ++++ ||+||++||++|++++|.|++++++| ++.|++|+++ .+.
T Consensus 51 ~~~~~~~f~l--~--dG~~v~l-sd~~----lV~FwaswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D---~~~---- 111 (181)
T PRK13728 51 EKPAPRWFRL--S--NGRQVNL-ADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLD---GQG---- 111 (181)
T ss_pred CCCCCCccCC--C--CCCEeeh-hHce----EEEEECCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeC---CCC----
Confidence 4456778884 3 8999999 8887 77899999999999999999999998 4899999863 111
Q ss_pred HHHHHHHcCCccceeec-CChhHHHHhCC--CceeEEEEECCCCcEEE-EecCCCchhhHHHHHHHHHHHh
Q 001380 506 IRNAVLRYGISHPVVND-GDMNLWRELGV--NSWPTFAVVGPNGKLLA-QLAGEGHRKDLDDLVEAALLFY 572 (1089)
Q Consensus 506 ~~~~~~~~~~~~~v~~d-~~~~l~~~~~v--~~~Pt~~lid~~G~i~~-~~~G~~~~~~l~~~l~~~l~~~ 572 (1089)
.+.||++.| ....+.+.|++ .++|++||||++|++++ .+.|..+.+++++.|+++++..
T Consensus 112 --------~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~~~~~G~~~~~~L~~~I~~ll~~~ 174 (181)
T PRK13728 112 --------DTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEALPLLQGATDAAGFMARMDTVLQMY 174 (181)
T ss_pred --------CCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEEEEEECCCCHHHHHHHHHHHHhhh
Confidence 268999985 66778889995 69999999999999975 6999999999999999988763
|
|
| >TIGR01685 MDP-1 magnesium-dependent phosphatase-1 | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.7e-17 Score=163.19 Aligned_cols=110 Identities=13% Similarity=0.081 Sum_probs=98.5
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCC-ChHhHHHHHHHCCCCC---------CCccEEEEcCCccCCCCCHHHHHHHHH
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSA-DRIKVDANLAAAGLPV---------SMFDAIVSADAFENLKPAPDIFLSASK 233 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~-~~~~~~~~l~~~gl~~---------~~fd~i~~~~~~~~~KP~~~~~~~~l~ 233 (1089)
..++||+.++|+.|+++|++++|+||+ ....++..++.+++ . .+|+.++++++....||.+.+++++.+
T Consensus 44 ~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l-~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~~~ 122 (174)
T TIGR01685 44 VTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEI-TYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKVNK 122 (174)
T ss_pred EEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCc-CCCCCcccHHHhceeeeeccCCchHHHHHHHHHHhhh
Confidence 378999999999999999999999998 88888999999998 4 789999999887777888888888888
Q ss_pred Hc--CCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHH
Q 001380 234 IL--NVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERL 274 (1089)
Q Consensus 234 ~l--gv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l 274 (1089)
.+ |++|++|+||||+..|+++|+++|++++++.+|.....+
T Consensus 123 ~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i~v~~g~~~~~~ 165 (174)
T TIGR01685 123 VDPSVLKPAQILFFDDRTDNVREVWGYGVTSCYCPSGMDKGTF 165 (174)
T ss_pred cccCCCCHHHeEEEcChhHhHHHHHHhCCEEEEcCCCccHHHH
Confidence 87 899999999999999999999999999999998754443
|
This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues. |
| >PRK10606 btuE putative glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6e-16 Score=157.35 Aligned_cols=137 Identities=17% Similarity=0.243 Sum_probs=110.3
Q ss_pred CCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCCh--hcHHHH
Q 001380 429 IVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNE--KDLEAI 506 (1089)
Q Consensus 429 ~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~--~~~~~~ 506 (1089)
.+++|+. .+++|+.++| ++++||+|||+|||+||++|. ++|.|++|+++|+++|+.||||++..|..+ ++.+++
T Consensus 4 ~~~~f~~--~~~~G~~v~L-s~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei 79 (183)
T PRK10606 4 SILTTVV--TTIDGEVTTL-EKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEI 79 (183)
T ss_pred CccCcEe--ECCCCCEEeH-HHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHH
Confidence 4677875 4679999999 999999999999999999996 799999999999999999999998776543 577899
Q ss_pred HHHHH-HcCCcccee--ecCC----hhHHHHhC------------------------------CCceeEEEEECCCCcEE
Q 001380 507 RNAVL-RYGISHPVV--NDGD----MNLWRELG------------------------------VNSWPTFAVVGPNGKLL 549 (1089)
Q Consensus 507 ~~~~~-~~~~~~~v~--~d~~----~~l~~~~~------------------------------v~~~Pt~~lid~~G~i~ 549 (1089)
++|++ +++++||++ .|.+ ..+++.+. |.+-=+-||||++|+++
T Consensus 80 ~~f~~~~~g~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv 159 (183)
T PRK10606 80 KTYCRTTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVI 159 (183)
T ss_pred HHHHHHccCCCceeEEEEccCCCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEE
Confidence 99997 799999998 3332 23444331 12223589999999999
Q ss_pred EEecCCCchhh--HHHHHHHHH
Q 001380 550 AQLAGEGHRKD--LDDLVEAAL 569 (1089)
Q Consensus 550 ~~~~G~~~~~~--l~~~l~~~l 569 (1089)
.++.....+.+ +++.|+++|
T Consensus 160 ~r~~~~~~p~~~~i~~~i~~~l 181 (183)
T PRK10606 160 QRFSPDMTPEDPIVMESIKLAL 181 (183)
T ss_pred EEECCCCCCCHHHHHHHHHHHh
Confidence 99888777666 888887766
|
|
| >TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.6e-16 Score=163.56 Aligned_cols=102 Identities=16% Similarity=0.066 Sum_probs=87.6
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCC----------CCHHHHHHHHHH
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLK----------PAPDIFLSASKI 234 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~K----------P~~~~~~~~l~~ 234 (1089)
.++||+.++|+.|+++|++++|+||+....++.+++.+|+. .+|+..+..++.+..+ ++++.+.+++++
T Consensus 80 ~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~-~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~~ 158 (201)
T TIGR01491 80 SLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPD-YVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKRE 158 (201)
T ss_pred CCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCC-eEEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999996 7777666655444333 334688899999
Q ss_pred cCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcC
Q 001380 235 LNVPTSECIVIEDALAGVQAAKAAQMRCIAVTT 267 (1089)
Q Consensus 235 lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~ 267 (1089)
+|+++++++||||+.+|+.+|+.+|+.++....
T Consensus 159 ~~~~~~~~i~iGDs~~D~~~a~~ag~~~a~~~~ 191 (201)
T TIGR01491 159 LNPSLTETVAVGDSKNDLPMFEVADISISLGDE 191 (201)
T ss_pred hCCCHHHEEEEcCCHhHHHHHHhcCCeEEECCC
Confidence 999999999999999999999999997665543
|
This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog. |
| >TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.9e-16 Score=152.72 Aligned_cols=102 Identities=26% Similarity=0.338 Sum_probs=87.4
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCCh---------------HhHHHHHHHCCCCCCCccEEEE----cCCccCCCCCH
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADR---------------IKVDANLAAAGLPVSMFDAIVS----ADAFENLKPAP 225 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~---------------~~~~~~l~~~gl~~~~fd~i~~----~~~~~~~KP~~ 225 (1089)
.++||+.++|+.|+++|++++|+||..+ ..+...++++++. .. ..+++ ++.....||+|
T Consensus 27 ~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~-~~~~~~~~~~~~~~~~KP~~ 104 (147)
T TIGR01656 27 QLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVA-VD-GVLFCPHHPADNCSCRKPKP 104 (147)
T ss_pred EEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCc-ee-EEEECCCCCCCCCCCCCCCH
Confidence 5799999999999999999999999763 5677788899985 21 22222 34556689999
Q ss_pred HHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCC
Q 001380 226 DIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTT 268 (1089)
Q Consensus 226 ~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g 268 (1089)
++|+++++++|+++++|+||||+..|+++|+++||++++|..|
T Consensus 105 ~~~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~~v~i~~~ 147 (147)
T TIGR01656 105 GLILEALKRLGVDASRSLVVGDRLRDLQAARNAGLAAVLLVDG 147 (147)
T ss_pred HHHHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCCEEEecCC
Confidence 9999999999999999999999999999999999999999764
|
This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3. |
| >cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.8e-16 Score=145.50 Aligned_cols=113 Identities=38% Similarity=0.681 Sum_probs=102.8
Q ss_pred cCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCc
Q 001380 437 LDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGIS 516 (1089)
Q Consensus 437 ~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~ 516 (1089)
+.+++|+.+++ ++++||++||.||++||++|+..++.|.++.+++++.++.+++|+++ .+ +.+.+++++++++.+
T Consensus 4 ~~~~~g~~~~~-~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d---~~-~~~~~~~~~~~~~~~ 78 (116)
T cd02966 4 LPDLDGKPVSL-SDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVD---DD-DPAAVKAFLKKYGIT 78 (116)
T ss_pred ccCCCCCEeeh-HHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECC---CC-CHHHHHHHHHHcCCC
Confidence 34568999999 88899999999999999999999999999999998778999999762 11 589999999999999
Q ss_pred cceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecC
Q 001380 517 HPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAG 554 (1089)
Q Consensus 517 ~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G 554 (1089)
|+++.|...++.+.|++.++|+++|+|++|++++++.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 79 FPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cceEEcCcchHHHhcCcCccceEEEECCCCcEEEEecC
Confidence 99999999999999999999999999999999998765
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. |
| >PTZ00253 tryparedoxin peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.3e-16 Score=161.27 Aligned_cols=142 Identities=16% Similarity=0.233 Sum_probs=109.6
Q ss_pred ccCCCCCCCCCCcccc--CCCCCceeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCC
Q 001380 422 ENRKTTPIVPEFPAKL--DWLNTAPLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFD 498 (1089)
Q Consensus 422 ~~~~~g~~~P~f~~~~--~~~~g~~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~ 498 (1089)
....+|+++|+|++.. .+.+|++++| ++++||++||+|| +.||+.|..+++.|.+++++|+++++.||+||+ +
T Consensus 4 ~~~~~G~~aPdF~~~~~~~~~~~~~v~l-~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~---d 79 (199)
T PTZ00253 4 GDAKINHPAPSFEEVALMPNGSFKKISL-SSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSM---D 79 (199)
T ss_pred cccccCCcCCCCEeeccccCCCCcEEeH-HHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeC---C
Confidence 3456899999999642 2346678999 8999999999999 488999999999999999999999999999987 3
Q ss_pred ChhcHHHHHHHHHH----cCCccceeecCChhHHHHhCCC------ceeEEEEECCCCcEEEEecCCCc-hhhHHHHHHH
Q 001380 499 NEKDLEAIRNAVLR----YGISHPVVNDGDMNLWRELGVN------SWPTFAVVGPNGKLLAQLAGEGH-RKDLDDLVEA 567 (1089)
Q Consensus 499 ~~~~~~~~~~~~~~----~~~~~~v~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~G~~~-~~~l~~~l~~ 567 (1089)
......+|....+. .+++||++.|.+.++++.||+. .+|++||||++|+|++.+.+... ...+++.++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~ 159 (199)
T PTZ00253 80 SEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRL 159 (199)
T ss_pred CHHHHHHHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHH
Confidence 33333344322111 1478999999999999999985 47999999999999998766432 2244444433
|
|
| >TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672 | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-15 Score=160.12 Aligned_cols=145 Identities=19% Similarity=0.119 Sum_probs=111.7
Q ss_pred EEEEecCCcccCCchHHHHHHHHHHHHcCCC-CCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhc
Q 001380 81 AVLFDMDGVLCNSEEPSRRAAVDVFAEMGVE-VTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDKYA 159 (1089)
Q Consensus 81 ~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (1089)
+|+||+||||+|+...+ .+|.. .+.+++..+.+. .+.+.|.+...
T Consensus 65 aViFDlDgTLlDSs~~~---------~~G~~~~s~~~~~~l~g~-------------------------~~w~~~~~~~~ 110 (237)
T TIGR01672 65 AVSFDIDDTVLFSSPGF---------WRGKKTFSPGSEDYLKNQ-------------------------VFWEKVNNGWD 110 (237)
T ss_pred EEEEeCCCccccCcHHH---------hCCcccCCHHHhhhhcCh-------------------------HHHHHHHHhcc
Confidence 99999999999999754 15554 233333322221 22233322222
Q ss_pred CCCCCCCCccHHHHHHHHHhCCCeEEEEcCC----ChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHc
Q 001380 160 KPNSGIGFPGALELINQCKSKGLKVAVASSA----DRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKIL 235 (1089)
Q Consensus 160 ~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~----~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~l 235 (1089)
. ...+.+++.++|++|+++|++++|+||. ....++.+++.+|++ .+|+.+++++.....||++. .+++++
T Consensus 111 ~--~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~-~~f~~i~~~d~~~~~Kp~~~---~~l~~~ 184 (237)
T TIGR01672 111 E--FSIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIP-AMNPVIFAGDKPGQYQYTKT---QWIQDK 184 (237)
T ss_pred c--CCcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCc-hheeEEECCCCCCCCCCCHH---HHHHhC
Confidence 2 2267778999999999999999999998 566888889999997 89999999998877888875 356777
Q ss_pred CCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC
Q 001380 236 NVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL 269 (1089)
Q Consensus 236 gv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~ 269 (1089)
++ ++||||+.+|+.+|+++|++++.|.+|.
T Consensus 185 ~i----~i~vGDs~~DI~aAk~AGi~~I~V~~g~ 214 (237)
T TIGR01672 185 NI----RIHYGDSDNDITAAKEAGARGIRILRAS 214 (237)
T ss_pred CC----eEEEeCCHHHHHHHHHCCCCEEEEEecC
Confidence 76 7999999999999999999999999986
|
Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-13 Score=158.64 Aligned_cols=249 Identities=22% Similarity=0.343 Sum_probs=196.1
Q ss_pred CCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCE
Q 001380 601 KFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHA 680 (1089)
Q Consensus 601 ~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~ 680 (1089)
..|.++++.+.+..+||++..++.+..++..-..+......+ +..|+|+++++.|+.+||.+..++.
T Consensus 31 ~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g-------------~~~p~~i~v~~~~~~vyv~~~~~~~ 97 (381)
T COG3391 31 RGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVG-------------GVYPAGVAVNPAGNKVYVTTGDSNT 97 (381)
T ss_pred CCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCC-------------CccccceeeCCCCCeEEEecCCCCe
Confidence 389999999977799999998887777776533333322211 1589999999999999999999999
Q ss_pred EEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC--CCcEEEEEECCCCeEEEEeCCCc
Q 001380 681 LREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA--GQHQIWEHSTVDGVTRAFSGDGY 758 (1089)
Q Consensus 681 I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~--~~~~I~~~~~~~g~~~~~~g~g~ 758 (1089)
|.++|..+.++......|. .|.+++++++++.+||++. +++.+.++|..++.+....-.|
T Consensus 98 v~vid~~~~~~~~~~~vG~-----------------~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG- 159 (381)
T COG3391 98 VSVIDTATNTVLGSIPVGL-----------------GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG- 159 (381)
T ss_pred EEEEcCcccceeeEeeecc-----------------CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC-
Confidence 9999977766666665442 7999999999999999999 5799999999988776654322
Q ss_pred cccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccC
Q 001380 759 ERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQH 838 (1089)
Q Consensus 759 ~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~ 838 (1089)
..|.+++++++|+.+|+++..+++|..++.++..+.. .... .....+..
T Consensus 160 --------------~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~----------------~~~~~~~~ 208 (381)
T COG3391 160 --------------NTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVG----------------SLVGVGTG 208 (381)
T ss_pred --------------CCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccc----------------cccccCCC
Confidence 1578999999999999999999999999977544432 1100 01223568
Q ss_pred ceEEEEccCCc-EEEEeCCC--CEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEEEECCCCE
Q 001380 839 PLGVYCAKNGQ-IYVADSYN--HKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADTNNNI 914 (1089)
Q Consensus 839 P~gva~~~~G~-lyVaD~~n--~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~~n~~ 914 (1089)
|.+++++++|+ +||++..+ +++.++|..++.+....... ..+ .|.+++++++|. +||++...+.
T Consensus 209 P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~-----------~~~-~~~~v~~~p~g~~~yv~~~~~~~ 276 (381)
T COG3391 209 PAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV-----------GSG-APRGVAVDPAGKAAYVANSQGGT 276 (381)
T ss_pred CceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc-----------ccC-CCCceeECCCCCEEEEEecCCCe
Confidence 99999999995 99999888 69999999888776653221 145 799999999985 8999999999
Q ss_pred EEEEeCCCC
Q 001380 915 IRYLDLNKE 923 (1089)
Q Consensus 915 I~~~~~~~~ 923 (1089)
+..++....
T Consensus 277 V~vid~~~~ 285 (381)
T COG3391 277 VSVIDGATD 285 (381)
T ss_pred EEEEeCCCC
Confidence 999998876
|
|
| >TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-15 Score=147.49 Aligned_cols=97 Identities=29% Similarity=0.472 Sum_probs=87.0
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCC--------hHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHc-
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSAD--------RIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKIL- 235 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~--------~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~l- 235 (1089)
.++||+.++|++|+++|++++|+||+. .+.++..++.+++. ++.++.+. ...||++++|+++++++
T Consensus 25 ~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~~~~--~~~KP~~~~~~~~~~~~~ 99 (132)
T TIGR01662 25 ILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP---IDVLYACP--HCRKPKPGMFLEALKRFN 99 (132)
T ss_pred eeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC---EEEEEECC--CCCCCChHHHHHHHHHcC
Confidence 578999999999999999999999998 78899999999995 44444444 56799999999999999
Q ss_pred CCCCCcEEEEcC-ChhhHHHHHHcCCeEEEEc
Q 001380 236 NVPTSECIVIED-ALAGVQAAKAAQMRCIAVT 266 (1089)
Q Consensus 236 gv~p~~~v~VGD-~~~Di~aA~~aG~~~i~V~ 266 (1089)
++++++++|||| ..+|+.+|+++|+.+|++.
T Consensus 100 ~~~~~~~v~IGD~~~~Di~~A~~~Gi~~i~~~ 131 (132)
T TIGR01662 100 EIDPEESVYVGDQDLTDLQAAKRAGLAFILVA 131 (132)
T ss_pred CCChhheEEEcCCCcccHHHHHHCCCeEEEee
Confidence 599999999999 6899999999999999985
|
In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme. |
| >PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.8e-16 Score=141.56 Aligned_cols=91 Identities=33% Similarity=0.553 Sum_probs=79.1
Q ss_pred CCEEEEEEecCCCcchhhhhhhHHHHHHHcC-CCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceee---cCChhHH
Q 001380 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYK-DMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVN---DGDMNLW 528 (1089)
Q Consensus 453 gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~-~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---d~~~~l~ 528 (1089)
||+++|+||++||++|++++|.|.+++++|+ +.++.+|+|+. +++.+++++++++++.+|..+. +....+.
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~-----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 75 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSL-----DEDEEEWKKFLKKNNFPWYNVPFDDDNNSELL 75 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE------SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEe-----CCCHHHHHHHHHhcCCCceEEeeCcchHHHHH
Confidence 7999999999999999999999999999999 56899999986 5778999999999988875543 3356899
Q ss_pred HHhCCCceeEEEEECCCCcE
Q 001380 529 RELGVNSWPTFAVVGPNGKL 548 (1089)
Q Consensus 529 ~~~~v~~~Pt~~lid~~G~i 548 (1089)
+.|+|.++|+++|+|++|+|
T Consensus 76 ~~~~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 76 KKYGINGIPTLVLLDPDGKI 95 (95)
T ss_dssp HHTT-TSSSEEEEEETTSBE
T ss_pred HHCCCCcCCEEEEECCCCCC
Confidence 99999999999999999986
|
... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.1e-14 Score=153.55 Aligned_cols=241 Identities=19% Similarity=0.271 Sum_probs=168.0
Q ss_pred CCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC
Q 001380 598 SPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE 677 (1089)
Q Consensus 598 ~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~ 677 (1089)
.......+...++..+.||++|..+++|.++++.......+..++. .+.+..++..|. |++++.
T Consensus 22 ~~~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~--------------~~~~~~~d~~g~-Lv~~~~- 85 (307)
T COG3386 22 KGATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGG--------------FSSGALIDAGGR-LIACEH- 85 (307)
T ss_pred cccccccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCC--------------cccceeecCCCe-EEEEcc-
Confidence 3445566777788788899999999999999997444445544421 367888887776 888874
Q ss_pred CCEEEEEECCCCeE-EEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC-----------CcEEEEEEC
Q 001380 678 NHALREIDFVNDTV-RTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG-----------QHQIWEHST 745 (1089)
Q Consensus 678 n~~I~~~d~~~g~v-~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~-----------~~~I~~~~~ 745 (1089)
.++.++.+.+.. +.++... ...+++.|+++.++|+| .+||++.+ .+.|+++++
T Consensus 86 --g~~~~~~~~~~~~t~~~~~~------------~~~~~~r~ND~~v~pdG-~~wfgt~~~~~~~~~~~~~~G~lyr~~p 150 (307)
T COG3386 86 --GVRLLDPDTGGKITLLAEPE------------DGLPLNRPNDGVVDPDG-RIWFGDMGYFDLGKSEERPTGSLYRVDP 150 (307)
T ss_pred --ccEEEeccCCceeEEecccc------------CCCCcCCCCceeEcCCC-CEEEeCCCccccCccccCCcceEEEEcC
Confidence 444555454444 6665322 12346799999999998 99999887 246889988
Q ss_pred CCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccC
Q 001380 746 VDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFG 825 (1089)
Q Consensus 746 ~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g 825 (1089)
.++.++.+. ..+..|+|||++|||+.||++|+..++|.+++.+.. .+........+.+.
T Consensus 151 ~g~~~~l~~---------------~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~------~g~~~~~~~~~~~~ 209 (307)
T COG3386 151 DGGVVRLLD---------------DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPA------TGPIGGRRGFVDFD 209 (307)
T ss_pred CCCEEEeec---------------CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcc------cCccCCcceEEEcc
Confidence 655555554 236689999999999999999999999999987630 00000000111111
Q ss_pred CCCCccccccccCceEEEEccCCcEEEEeCCC-CEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccC--
Q 001380 826 DRDGMGSEVLLQHPLGVYCAKNGQIYVADSYN-HKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQN-- 902 (1089)
Q Consensus 826 ~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n-~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~-- 902 (1089)
... ..|.|+++|.+|++|++-..+ .+|.+++|++..+.++.- .-..|+.+|+...
T Consensus 210 ~~~--------G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~l--------------P~~~~t~~~FgG~~~ 267 (307)
T COG3386 210 EEP--------GLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEIKL--------------PVKRPTNPAFGGPDL 267 (307)
T ss_pred CCC--------CCCCceEEeCCCCEEEecccCCceEEEECCCCcEEEEEEC--------------CCCCCccceEeCCCc
Confidence 112 258999999999999655444 499999999777766653 2255888898753
Q ss_pred CcEEEEECCC
Q 001380 903 GNLFIADTNN 912 (1089)
Q Consensus 903 G~lyVad~~n 912 (1089)
..|||+....
T Consensus 268 ~~L~iTs~~~ 277 (307)
T COG3386 268 NTLYITSARS 277 (307)
T ss_pred CEEEEEecCC
Confidence 3699987655
|
|
| >TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.7e-16 Score=173.03 Aligned_cols=122 Identities=16% Similarity=0.264 Sum_probs=97.9
Q ss_pred CCccHHHHHHHHHhCCCeEEEEcCCChHhH-HHHHHHCCCCCCCccEEE---EcCCccCCCCCHHHHHHHHHHcCCCCCc
Q 001380 166 GFPGALELINQCKSKGLKVAVASSADRIKV-DANLAAAGLPVSMFDAIV---SADAFENLKPAPDIFLSASKILNVPTSE 241 (1089)
Q Consensus 166 ~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~-~~~l~~~gl~~~~fd~i~---~~~~~~~~KP~~~~~~~~l~~lgv~p~~ 241 (1089)
-++++.++++.|+++|+ ++|+||.+.... ...+...+.. .+|+.+. +.+....+||+|++|..+++++|+++++
T Consensus 144 ~y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~~~g-~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~~~ 221 (279)
T TIGR01452 144 SYAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRTPGTG-SLVAAIETASGRQPLVVGKPSPYMFECITENFSIDPAR 221 (279)
T ss_pred CHHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcccChH-HHHHHHHHHhCCceeccCCCCHHHHHHHHHHhCCChhh
Confidence 37899999999999887 799999766432 1223344553 5666553 3455567899999999999999999999
Q ss_pred EEEEcCCh-hhHHHHHHcCCeEEEEcCCC-CHHHHhh--------cCCcEEecCcccC
Q 001380 242 CIVIEDAL-AGVQAAKAAQMRCIAVTTTL-SEERLKE--------ASPSLIRKEIGSV 289 (1089)
Q Consensus 242 ~v~VGD~~-~Di~aA~~aG~~~i~V~~g~-~~~~l~~--------~~~d~vi~dl~el 289 (1089)
|+||||++ +||++|+++||++++|.+|. ..+++.+ .+||++++++.++
T Consensus 222 ~lmIGD~~~tDI~~A~~aGi~si~V~~G~~~~~~l~~~~~~~~~~~~Pd~~~~~l~~l 279 (279)
T TIGR01452 222 TLMVGDRLETDILFGHRCGMTTVLVLSGVSRLEEAQEYLAAGQHDLVPDYVVESLADL 279 (279)
T ss_pred EEEECCChHHHHHHHHHcCCcEEEECCCCCCHHHHHhhhcccccCCCCCEEecccccC
Confidence 99999996 99999999999999999998 6666653 4799999999775
|
This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association. |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.9e-13 Score=152.74 Aligned_cols=262 Identities=15% Similarity=0.174 Sum_probs=174.8
Q ss_pred CCCceEEEeecCCeEEEEeCCCCEEEEEeCC--CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCC
Q 001380 601 KFPGKLAIDILNNRLFISDSNHNRIVVTDLD--GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTEN 678 (1089)
Q Consensus 601 ~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~--g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n 678 (1089)
..|..+++++.+..||++....+.|..++.+ |+.. .+..... ...|.+|+++++|+.+|++....
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~-~~~~~~~------------~~~p~~i~~~~~g~~l~v~~~~~ 101 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALT-FAAESPL------------PGSPTHISTDHQGRFLFSASYNA 101 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceE-EeeeecC------------CCCceEEEECCCCCEEEEEEcCC
Confidence 3577899998777899998878888777654 4432 2221101 12689999999999999999888
Q ss_pred CEEEEEECCC-CeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCC-CeEEEEeCC
Q 001380 679 HALREIDFVN-DTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVD-GVTRAFSGD 756 (1089)
Q Consensus 679 ~~I~~~d~~~-g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~-g~~~~~~g~ 756 (1089)
+.|..++.+. +.+....... .....|++++++|+|+.+|+++.+.+.|+.||... +.+......
T Consensus 102 ~~v~v~~~~~~g~~~~~~~~~--------------~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~ 167 (330)
T PRK11028 102 NCVSVSPLDKDGIPVAPIQII--------------EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPA 167 (330)
T ss_pred CeEEEEEECCCCCCCCceeec--------------cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCC
Confidence 9999998752 3222111100 01246899999999999999999999999999764 332211000
Q ss_pred CccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCC--CCeEEEecCCCCCCCCccccCCCCCccccc
Q 001380 757 GYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKT--GGSRLLAGGDPIFPDNLFKFGDRDGMGSEV 834 (1089)
Q Consensus 757 g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~--~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~ 834 (1089)
.. .. ..-..|++++++++|+++||++..+++|..++.+. +..+.+..-. ..+. ...+
T Consensus 168 ~~-~~--------~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~-~~p~------~~~~----- 226 (330)
T PRK11028 168 EV-TT--------VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLD-MMPA------DFSD----- 226 (330)
T ss_pred ce-ec--------CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEe-cCCC------cCCC-----
Confidence 00 00 00135899999999999999999999999998863 3332221100 0000 0001
Q ss_pred cccCceEEEEccCCc-EEEEeCCCCEEEEEeC--CCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCC-cEEEEEC
Q 001380 835 LLQHPLGVYCAKNGQ-IYVADSYNHKIKKLDP--ASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNG-NLFIADT 910 (1089)
Q Consensus 835 ~l~~P~gva~~~~G~-lyVaD~~n~~I~~~d~--~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G-~lyVad~ 910 (1089)
-.+|.+++++|+|+ +||++...+.|.+|+. +++..+.+. .-.. -..|.+++++++| .||+++.
T Consensus 227 -~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~-~~~~-----------~~~p~~~~~~~dg~~l~va~~ 293 (330)
T PRK11028 227 -TRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEG-HQPT-----------ETQPRGFNIDHSGKYLIAAGQ 293 (330)
T ss_pred -CccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeE-EEec-----------cccCCceEECCCCCEEEEEEc
Confidence 12577899999985 9999988899988865 333333222 1111 1359999999998 4999999
Q ss_pred CCCEEEEEeCCCC
Q 001380 911 NNNIIRYLDLNKE 923 (1089)
Q Consensus 911 ~n~~I~~~~~~~~ 923 (1089)
.++.|.+|+++..
T Consensus 294 ~~~~v~v~~~~~~ 306 (330)
T PRK11028 294 KSHHISVYEIDGE 306 (330)
T ss_pred cCCcEEEEEEcCC
Confidence 8999999987643
|
|
| >TIGR01261 hisB_Nterm histidinol-phosphatase | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.4e-15 Score=148.25 Aligned_cols=102 Identities=19% Similarity=0.189 Sum_probs=92.3
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCC---------------hHhHHHHHHHCCCCCCCccEEE-E----cCCccCCCCC
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSAD---------------RIKVDANLAAAGLPVSMFDAIV-S----ADAFENLKPA 224 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~---------------~~~~~~~l~~~gl~~~~fd~i~-~----~~~~~~~KP~ 224 (1089)
.++||+.++|++|+++|++++|+||.. ...+...++.+|+. |+.++ + +++....||+
T Consensus 29 ~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~---fd~ii~~~~~~~~~~~~~KP~ 105 (161)
T TIGR01261 29 RFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGII---FDDVLICPHFPDDNCDCRKPK 105 (161)
T ss_pred eECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCc---eeEEEECCCCCCCCCCCCCCC
Confidence 689999999999999999999999963 45778889999995 87664 4 4778889999
Q ss_pred HHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC
Q 001380 225 PDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL 269 (1089)
Q Consensus 225 ~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~ 269 (1089)
+++|..+++++++++++++||||+.+|+++|+++||.+++|.++.
T Consensus 106 ~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~i~~~~~~ 150 (161)
T TIGR01261 106 IKLLEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRGIQYDEEE 150 (161)
T ss_pred HHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeEEEEChhh
Confidence 999999999999999999999999999999999999999998864
|
This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis. |
| >PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.4e-15 Score=158.61 Aligned_cols=189 Identities=16% Similarity=0.149 Sum_probs=124.7
Q ss_pred ceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcC---CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 001380 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMG---TGEANFLGGVASVKGVKGFDSEAAKKRFFEIYL 155 (1089)
Q Consensus 79 ~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (1089)
-++|+||+||||++..... .++++++. ...+++.+... .+..+..+....... . . ..+++.+.+.
T Consensus 3 ~~~vifDfDgTi~~~d~~~-----~~~~~~~~-~~~~~i~~~~~~g~~~~~~~~~~~~~~l~--~-~---~~~~~~~~~~ 70 (219)
T PRK09552 3 SIQIFCDFDGTITNNDNII-----AIMKKFAP-PEWEELKDDILSQELSIQEGVGQMFQLLP--S-N---LKEEIIQFLL 70 (219)
T ss_pred CcEEEEcCCCCCCcchhhH-----HHHHHhCH-HHHHHHHHHHHhCCcCHHHHHHHHHHhCC--C-C---chHHHHHHHH
Confidence 3589999999999988643 24444442 22344433221 123334444443322 1 1 1122223222
Q ss_pred HHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCC-Cc--cEEEEcCCccCCCCCHHH-----
Q 001380 156 DKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVS-MF--DAIVSADAFENLKPAPDI----- 227 (1089)
Q Consensus 156 ~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~-~f--d~i~~~~~~~~~KP~~~~----- 227 (1089)
+ . ..++||+.++|+.|+++|++++|+|++....++.+++++ +... ++ +..+.++.....||.|..
T Consensus 71 ~----~--~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~ 143 (219)
T PRK09552 71 E----T--AEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQN 143 (219)
T ss_pred h----C--CCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCccccccc
Confidence 1 1 278999999999999999999999999999999999998 6411 22 445566666677887764
Q ss_pred -----HHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHH-hhcCCcEEecCcccC
Q 001380 228 -----FLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERL-KEASPSLIRKEIGSV 289 (1089)
Q Consensus 228 -----~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l-~~~~~d~vi~dl~el 289 (1089)
...++++++..+++|+||||+.+|+.+|++||+.++ .+.-.+.. ...-+.+.+++|.|+
T Consensus 144 ~~~~~K~~~l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~~~a---~~~l~~~~~~~~~~~~~~~~f~ei 208 (219)
T PRK09552 144 HCGCCKPSLIRKLSDTNDFHIVIGDSITDLEAAKQADKVFA---RDFLITKCEELGIPYTPFETFHDV 208 (219)
T ss_pred cCCCchHHHHHHhccCCCCEEEEeCCHHHHHHHHHCCccee---HHHHHHHHHHcCCCccccCCHHHH
Confidence 357889999999999999999999999999998333 22111111 223466777888777
|
|
| >TIGR01664 DNA-3'-Pase DNA 3'-phosphatase | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.1e-15 Score=148.51 Aligned_cols=96 Identities=18% Similarity=0.263 Sum_probs=85.4
Q ss_pred CCccHHHHHHHHHhCCCeEEEEcCCChH------------hHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHH
Q 001380 166 GFPGALELINQCKSKGLKVAVASSADRI------------KVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASK 233 (1089)
Q Consensus 166 ~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~------------~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~ 233 (1089)
++||+.++|+.|+++|++++|+||.... .++.+++++|+. ++.++++++....||+|++|+++++
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~---~~~ii~~~~~~~~KP~p~~~~~~~~ 119 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVP---IQVLAATHAGLYRKPMTGMWEYLQS 119 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCC---EEEEEecCCCCCCCCccHHHHHHHH
Confidence 6899999999999999999999997653 567889999995 3677777766678999999999999
Q ss_pred HcC--CCCCcEEEEcCCh--------hhHHHHHHcCCeEEE
Q 001380 234 ILN--VPTSECIVIEDAL--------AGVQAAKAAQMRCIA 264 (1089)
Q Consensus 234 ~lg--v~p~~~v~VGD~~--------~Di~aA~~aG~~~i~ 264 (1089)
++| +++++++||||+. +|+++|+++|+++++
T Consensus 120 ~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~~~ 160 (166)
T TIGR01664 120 QYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEFKY 160 (166)
T ss_pred HcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCCcCC
Confidence 999 9999999999996 699999999998865
|
The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.6e-13 Score=152.01 Aligned_cols=282 Identities=20% Similarity=0.285 Sum_probs=180.4
Q ss_pred CCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHHhcccccccCCC-----CCcccccCCCCCCCCCCCCCCceEE
Q 001380 533 VNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFYGKKKLLDNTP-----LPLSLEKDNDPRLFTSPLKFPGKLA 607 (1089)
Q Consensus 533 v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~P~~va 607 (1089)
...-|+++.++++++.++...... ...|.+.... ..+.... ...+.-..|..++
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~----------------~~~g~v~~~~i~~~~g~L~~~~-----~~~~~g~~p~~i~ 93 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGS----------------GDSGGVSSYRIDPDTGTLTLLN-----SVPSGGSSPCHIA 93 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTS----------------STTTEEEEEEEETTTTEEEEEE-----EEEESSSCEEEEE
T ss_pred CCCCCceEEEEeCCCEEEEEEccc----------------cCCCCEEEEEECCCcceeEEee-----eeccCCCCcEEEE
Confidence 456699999999999998854321 0111111000 0010000 1122456789999
Q ss_pred EeecCCeEEEEeCCCCEEEEEeCC--CCEEEEEecCCCCCCCCCCC-CccccCCcceeEEeeCCCEEEEEECCCCEEEEE
Q 001380 608 IDILNNRLFISDSNHNRIVVTDLD--GNFIVQIGSSGEEGLRDGSF-DDATFNRPQGLAYNAKKNLLYVADTENHALREI 684 (1089)
Q Consensus 608 vd~~~g~L~vsd~~~~~I~~~~~~--g~~~~~i~~~g~~g~~dG~~-~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~ 684 (1089)
+++.+..||+++.+.+.|.+++.+ |............|. |+- ....-.+|+.+.++|+|+++||+|.+..+|+.+
T Consensus 94 ~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~--g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~ 171 (345)
T PF10282_consen 94 VDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGS--GPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVY 171 (345)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEE--ESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred EecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCC--CCcccccccccceeEEECCCCCEEEEEecCCCEEEEE
Confidence 999889999999999998877654 655443211000000 100 112346899999999999999999999999999
Q ss_pred ECCCCe--EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECC--CCeEEEEeCCCccc
Q 001380 685 DFVNDT--VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTV--DGVTRAFSGDGYER 760 (1089)
Q Consensus 685 d~~~g~--v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~--~g~~~~~~g~g~~~ 760 (1089)
+.+... +........ ..-+.|+.++|+|+++.+||++...+.|..|+.. ++..+.........
T Consensus 172 ~~~~~~~~l~~~~~~~~-------------~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~ 238 (345)
T PF10282_consen 172 DIDDDTGKLTPVDSIKV-------------PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLP 238 (345)
T ss_dssp EE-TTS-TEEEEEEEEC-------------STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCE
T ss_pred EEeCCCceEEEeecccc-------------ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecc
Confidence 887644 444221100 0114799999999999999999999998887766 66554443211100
Q ss_pred cCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcC--CCCeEEEecCCCCCCCCccccCCCCCccccccccC
Q 001380 761 NLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLK--TGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQH 838 (1089)
Q Consensus 761 ~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~--~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~ 838 (1089)
. + ...-..|++|++++||++|||++.+.++|..|+.+ ++..+.+.. ... .-.+
T Consensus 239 ~--~----~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~---------~~~----------~G~~ 293 (345)
T PF10282_consen 239 E--G----FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT---------VPT----------GGKF 293 (345)
T ss_dssp T--T----SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE---------EEE----------SSSS
T ss_pred c--c----ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE---------EeC----------CCCC
Confidence 0 0 01123799999999999999999999999999873 344443311 000 1246
Q ss_pred ceEEEEccCCc-EEEEeCCCCEEEEE--eCCCCeEEEEec
Q 001380 839 PLGVYCAKNGQ-IYVADSYNHKIKKL--DPASNRVSTLAG 875 (1089)
Q Consensus 839 P~gva~~~~G~-lyVaD~~n~~I~~~--d~~~~~v~t~~g 875 (1089)
|.+++++++|+ |||++...+.|..| |+++|.+.....
T Consensus 294 Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 294 PRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred ccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecc
Confidence 99999999995 99999999988865 678898887763
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458 | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-15 Score=164.77 Aligned_cols=123 Identities=18% Similarity=0.157 Sum_probs=103.9
Q ss_pred CCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCcc---CCCCCHHHHHHHHHHcCCCCCcE
Q 001380 166 GFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFE---NLKPAPDIFLSASKILNVPTSEC 242 (1089)
Q Consensus 166 ~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~---~~KP~~~~~~~~l~~lgv~p~~~ 242 (1089)
.++++.+.++.|++.+++++|+||.++......+..+|+. .+|+.+.++.... .+||+|.+|+.+++++|++|+++
T Consensus 121 ~y~~l~~a~~~L~~~~~~~~iatn~~~~~~~~~~~~~g~g-~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~ 199 (257)
T TIGR01458 121 SYQILNQAFRLLLDGAKPLLIAIGKGRYYKRKDGLALDVG-PFVTALEYATDTKATVVGKPSKTFFLEALRATGCEPEEA 199 (257)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEeCCCCCCcCCCCCCCCch-HHHHHHHHHhCCCceeecCCCHHHHHHHHHHhCCChhhE
Confidence 3678899999999999999999998877766666777885 8888776654433 37999999999999999999999
Q ss_pred EEEcCCh-hhHHHHHHcCCeEEEEcCCC-CHH--HHhhcCCcEEecCcccC
Q 001380 243 IVIEDAL-AGVQAAKAAQMRCIAVTTTL-SEE--RLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 243 v~VGD~~-~Di~aA~~aG~~~i~V~~g~-~~~--~l~~~~~d~vi~dl~el 289 (1089)
+||||+. +||.+|+++||++++|.+|. ..+ +.....|+++++++.++
T Consensus 200 ~~vGD~~~~Di~~a~~~G~~~i~v~~G~~~~~~~~~~~~~pd~~~~sl~el 250 (257)
T TIGR01458 200 VMIGDDCRDDVGGAQDCGMRGIQVRTGKYRPSDEEKINVPPDLTCDSLPHA 250 (257)
T ss_pred EEECCCcHHHHHHHHHcCCeEEEECCCCCChHHhcccCCCCCEEECCHHHH
Confidence 9999997 99999999999999999986 333 23456899999999888
|
This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published. |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-12 Score=147.98 Aligned_cols=249 Identities=14% Similarity=0.178 Sum_probs=166.3
Q ss_pred CeEEEEeCCCCEEEEEeCC--CC--EEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECC-
Q 001380 613 NRLFISDSNHNRIVVTDLD--GN--FIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFV- 687 (1089)
Q Consensus 613 g~L~vsd~~~~~I~~~~~~--g~--~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~- 687 (1089)
.++|+++...+.|..++.+ |+ .+.++... ..|..++++|+|++||++....+.|..|+.+
T Consensus 2 ~~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~---------------~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~ 66 (330)
T PRK11028 2 QIVYIASPESQQIHVWNLNHEGALTLLQVVDVP---------------GQVQPMVISPDKRHLYVGVRPEFRVLSYRIAD 66 (330)
T ss_pred eEEEEEcCCCCCEEEEEECCCCceeeeeEEecC---------------CCCccEEECCCCCEEEEEECCCCcEEEEEECC
Confidence 3589998888889998874 44 23333221 2688999999999999998878888777765
Q ss_pred CCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECC-CCeEEEEeCCCccccCCCCC
Q 001380 688 NDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTV-DGVTRAFSGDGYERNLNGSS 766 (1089)
Q Consensus 688 ~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~-~g~~~~~~g~g~~~~~~g~~ 766 (1089)
++.++.+.. .. ....|.+|+++|+++.+|++..+.+.|..|+.+ ++.+......
T Consensus 67 ~g~l~~~~~-~~--------------~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~---------- 121 (330)
T PRK11028 67 DGALTFAAE-SP--------------LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQI---------- 121 (330)
T ss_pred CCceEEeee-ec--------------CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceee----------
Confidence 455543321 10 012689999999999999999888888888764 2322111100
Q ss_pred CCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEcc
Q 001380 767 SLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAK 846 (1089)
Q Consensus 767 ~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~ 846 (1089)
......|++++++|+|+.+||++.+.++|..++.++.+....... ..... . .-.+|.++++++
T Consensus 122 --~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~------~~~~~--~-------~g~~p~~~~~~p 184 (330)
T PRK11028 122 --IEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEP------AEVTT--V-------EGAGPRHMVFHP 184 (330)
T ss_pred --ccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCC------Cceec--C-------CCCCCceEEECC
Confidence 011246899999999999999999999999999875321100000 00000 0 013689999999
Q ss_pred CC-cEEEEeCCCCEEEEEeCC--CCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEEEECCCCEEEEEeCCC
Q 001380 847 NG-QIYVADSYNHKIKKLDPA--SNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADTNNNIIRYLDLNK 922 (1089)
Q Consensus 847 ~G-~lyVaD~~n~~I~~~d~~--~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~~n~~I~~~~~~~ 922 (1089)
+| .+||++...+.|..++.+ ++.+..+...... ..+ ...-..|.+++++++|+ +||++.+.+.|.+|+.+.
T Consensus 185 dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~--p~~---~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 185 NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMM--PAD---FSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecC--CCc---CCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 98 599999989999988765 4444333211100 000 00113466799999886 999999999999998865
Q ss_pred C
Q 001380 923 E 923 (1089)
Q Consensus 923 ~ 923 (1089)
.
T Consensus 260 ~ 260 (330)
T PRK11028 260 D 260 (330)
T ss_pred C
Confidence 4
|
|
| >PRK13582 thrH phosphoserine phosphatase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.2e-14 Score=147.92 Aligned_cols=186 Identities=15% Similarity=0.130 Sum_probs=116.7
Q ss_pred ceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHh
Q 001380 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDKY 158 (1089)
Q Consensus 79 ~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (1089)
+++|+||+||||++ +.|..+++++|++... .+... ......................+.. .+. .+
T Consensus 1 ~~~v~FD~DGTL~~------~~~~~~~~~~g~~~~~-~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~i----~~~-~~-- 65 (205)
T PRK13582 1 MEIVCLDLEGVLVP------EIWIAFAEKTGIPELR-ATTRD-IPDYDVLMKQRLDILDEHGLGLADI----QEV-IA-- 65 (205)
T ss_pred CeEEEEeCCCCChh------hHHHHHHHHcCChHHH-HHhcC-CCCHHHHHHHHHHHHHHcCCCHHHH----HHH-HH--
Confidence 47899999999993 2566677788874321 11100 0111112211111111001111111 111 11
Q ss_pred cCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCc----cCCCCCHHHHHHHHHH
Q 001380 159 AKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAF----ENLKPAPDIFLSASKI 234 (1089)
Q Consensus 159 ~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~----~~~KP~~~~~~~~l~~ 234 (1089)
. ..++||+.++|..|+++ ++++|+||+....++..++++|+. .+|+..+..++. +..++.|.....++++
T Consensus 66 -~---~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~gl~-~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~ 139 (205)
T PRK13582 66 -T---LDPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQLGWP-TLFCHSLEVDEDGMITGYDLRQPDGKRQAVKA 139 (205)
T ss_pred -h---CCCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHcCCc-hhhcceEEECCCCeEECccccccchHHHHHHH
Confidence 1 26899999999999999 999999999999999999999996 777654433211 1123334445666777
Q ss_pred cCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcE-EecCcccC
Q 001380 235 LNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSL-IRKEIGSV 289 (1089)
Q Consensus 235 lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~-vi~dl~el 289 (1089)
++..+++|+||||+.+|+.+++++|+.. .+.. .. ......+++ ++.++.++
T Consensus 140 ~~~~~~~~v~iGDs~~D~~~~~aa~~~v-~~~~--~~-~~~~~~~~~~~~~~~~el 191 (205)
T PRK13582 140 LKSLGYRVIAAGDSYNDTTMLGEADAGI-LFRP--PA-NVIAEFPQFPAVHTYDEL 191 (205)
T ss_pred HHHhCCeEEEEeCCHHHHHHHHhCCCCE-EECC--CH-HHHHhCCcccccCCHHHH
Confidence 7777899999999999999999999743 3332 32 233334555 88888887
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-11 Score=131.11 Aligned_cols=283 Identities=15% Similarity=0.217 Sum_probs=196.4
Q ss_pred CCCCCCceEEEeecCCeEEEEeCC--CCEEEEEeCCC--CEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEE
Q 001380 598 SPLKFPGKLAIDILNNRLFISDSN--HNRIVVTDLDG--NFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYV 673 (1089)
Q Consensus 598 ~~l~~P~~vavd~~~g~L~vsd~~--~~~I~~~~~~g--~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyV 673 (1089)
..+..|.-|++++.+.+||+.... .+.|..+..|. ..+..+...... -+.|.-+++|++|.+||+
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~-----------g~~p~yvsvd~~g~~vf~ 105 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLP-----------GSPPCYVSVDEDGRFVFV 105 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccC-----------CCCCeEEEECCCCCEEEE
Confidence 445788999999977799988765 66776654442 233343332121 135699999999999999
Q ss_pred EECCCCEEEEEECCC-CeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEE
Q 001380 674 ADTENHALREIDFVN-DTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRA 752 (1089)
Q Consensus 674 aD~~n~~I~~~d~~~-g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~ 752 (1089)
|....+.|.++-.+. |.+....+.-. ..+.++-..|.-..++-.-++|+++.|+++|.|..+|..|+.+.|.+..
T Consensus 106 AnY~~g~v~v~p~~~dG~l~~~v~~~~----h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~ 181 (346)
T COG2706 106 ANYHSGSVSVYPLQADGSLQPVVQVVK----HTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTP 181 (346)
T ss_pred EEccCceEEEEEcccCCccccceeeee----cCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccc
Confidence 999999998887743 55544422111 0111222344445678889999999999999999999999999887665
Q ss_pred EeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCC--CCeEEEecCCCCCCCCccccCCCCCc
Q 001380 753 FSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKT--GGSRLLAGGDPIFPDNLFKFGDRDGM 830 (1089)
Q Consensus 753 ~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~--~~~~~~~g~~~~~~~~l~~~g~~dg~ 830 (1089)
....-. ..-+.|..|+++|+++..|+...-+++|.++..++ +....+-.-..+ |. +|- |
T Consensus 182 ~~~~~v-----------~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tl-P~---dF~---g- 242 (346)
T COG2706 182 ADPAEV-----------KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTL-PE---DFT---G- 242 (346)
T ss_pred cccccc-----------CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccC-cc---ccC---C-
Confidence 442110 11246999999999999999999999998887665 444433221111 11 111 1
Q ss_pred cccccccCceEEEEccCCc-EEEEeCCCCEEE--EEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EE
Q 001380 831 GSEVLLQHPLGVYCAKNGQ-IYVADSYNHKIK--KLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LF 906 (1089)
Q Consensus 831 ~~~~~l~~P~gva~~~~G~-lyVaD~~n~~I~--~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-ly 906 (1089)
-.+...|.+++||+ ||+++.+.+.|. ++|++++.+..+.-.... -..|.+..+++.|+ |+
T Consensus 243 -----~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te-----------g~~PR~F~i~~~g~~Li 306 (346)
T COG2706 243 -----TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE-----------GQFPRDFNINPSGRFLI 306 (346)
T ss_pred -----CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC-----------CcCCccceeCCCCCEEE
Confidence 23456788899995 999999988775 568899988887654322 35699999999886 78
Q ss_pred EEECCCCEEEEEeCCCCCceEEEE
Q 001380 907 IADTNNNIIRYLDLNKEEPELQTL 930 (1089)
Q Consensus 907 Vad~~n~~I~~~~~~~~~~~~~~l 930 (1089)
++.-..+.|.+|..+..+..+..+
T Consensus 307 aa~q~sd~i~vf~~d~~TG~L~~~ 330 (346)
T COG2706 307 AANQKSDNITVFERDKETGRLTLL 330 (346)
T ss_pred EEccCCCcEEEEEEcCCCceEEec
Confidence 888888889998888775444433
|
|
| >TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.6e-14 Score=141.11 Aligned_cols=99 Identities=14% Similarity=0.183 Sum_probs=75.2
Q ss_pred CCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHH-HHh
Q 001380 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLW-REL 531 (1089)
Q Consensus 453 gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~-~~~ 531 (1089)
+++.||+|||+||++|++|+|.|++++++| ++.|++|+.+. .. .+ .||+..|.+.... +.|
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~-----~~------~~----~fp~~~~~~~~~~~~~~ 111 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDG-----QG------LT----GFPDPLPATPEVMQTFF 111 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCC-----Cc------cc----ccccccCCchHHHHHHh
Confidence 455699999999999999999999999998 47788887531 11 01 3555554444443 455
Q ss_pred ---CCCceeEEEEECCCCcEEE-EecCCCchhhHHHHHHHHH
Q 001380 532 ---GVNSWPTFAVVGPNGKLLA-QLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 532 ---~v~~~Pt~~lid~~G~i~~-~~~G~~~~~~l~~~l~~~l 569 (1089)
++.++|++|+||++|+++. ++.|..+.+++++.|+++|
T Consensus 112 ~~~~v~~iPTt~LID~~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 112 PNPRPVVTPATFLVNVNTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred ccCCCCCCCeEEEEeCCCCEEEEEeecccCHHHHHHHHHHhC
Confidence 8899999999999988644 6899999998888877653
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase. |
| >PRK10444 UMP phosphatase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-14 Score=155.26 Aligned_cols=205 Identities=19% Similarity=0.226 Sum_probs=122.5
Q ss_pred ceEEEEecCCcccCCchHHHHHHHH--HHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHH--HHHHHHHH
Q 001380 79 VSAVLFDMDGVLCNSEEPSRRAAVD--VFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAA--KKRFFEIY 154 (1089)
Q Consensus 79 ~k~ViFD~DGTL~d~~~~~~~a~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 154 (1089)
|++|+||+||||+++...+..+.+. .+++.|... -.+++....+...+.+.+.. .|+.. ..++. .......|
T Consensus 1 ~~~v~~DlDGtL~~~~~~~p~a~~~l~~L~~~g~~~--~~~Tn~~~~~~~~~~~~l~~-~G~~~-~~~~i~ts~~~~~~~ 76 (248)
T PRK10444 1 IKNVICDIDGVLMHDNVAVPGAAEFLHRILDKGLPL--VLLTNYPSQTGQDLANRFAT-AGVDV-PDSVFYTSAMATADF 76 (248)
T ss_pred CcEEEEeCCCceEeCCeeCccHHHHHHHHHHCCCeE--EEEeCCCCCCHHHHHHHHHH-cCCCC-CHhhEecHHHHHHHH
Confidence 5789999999999987655544432 234444432 23344444455555555543 34422 22211 11222233
Q ss_pred HHHhcCCCCCCCCccHHHHHHHHHhCCCeEE------EEcCCCh----HhHHHHHH--HCCCC-----------------
Q 001380 155 LDKYAKPNSGIGFPGALELINQCKSKGLKVA------VASSADR----IKVDANLA--AAGLP----------------- 205 (1089)
Q Consensus 155 ~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~va------IvSn~~~----~~~~~~l~--~~gl~----------------- 205 (1089)
....... ....-|...+.+.|++.|+.+. |+-+.+. +.+..... +-|..
T Consensus 77 L~~~~~~--~v~~~g~~~l~~~l~~~g~~~~~~~~~~Vvvg~~~~~~~~~l~~a~~~l~~g~~~i~~n~D~~~~g~~~~~ 154 (248)
T PRK10444 77 LRRQEGK--KAYVIGEGALIHELYKAGFTITDINPDFVIVGETRSYNWDMMHKAAYFVANGARFIATNPDTHGRGFYPAC 154 (248)
T ss_pred HHhCCCC--EEEEEcCHHHHHHHHHCcCEecCCCCCEEEEeCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCcCcH
Confidence 3322111 1334566667777776666531 2211111 11111111 11211
Q ss_pred ---CCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCCh-hhHHHHHHcCCeEEEEcCCC-CHHHHhh--cC
Q 001380 206 ---VSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDAL-AGVQAAKAAQMRCIAVTTTL-SEERLKE--AS 278 (1089)
Q Consensus 206 ---~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~-~~~~l~~--~~ 278 (1089)
...++.+.+.+....+||+|++|+.+++++++++++|+||||++ +||++|+++|+++++|.+|. ..+++.+ ..
T Consensus 155 G~~~~~l~~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~v~IGD~~~tDi~~A~~~G~~~vlV~~G~~~~~~l~~~~~~ 234 (248)
T PRK10444 155 GALCAGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSTLDDIDSMPFR 234 (248)
T ss_pred HHHHHHHHHHhCCCccccCCCCHHHHHHHHHHcCCCcccEEEECCCcHHHHHHHHHcCCCEEEECCCCCCHHHHhcCCCC
Confidence 00011223334445689999999999999999999999999998 99999999999999999998 6666653 68
Q ss_pred CcEEecCcccC
Q 001380 279 PSLIRKEIGSV 289 (1089)
Q Consensus 279 ~d~vi~dl~el 289 (1089)
|+++++++.++
T Consensus 235 pd~~~~sl~el 245 (248)
T PRK10444 235 PSWIYPSVADI 245 (248)
T ss_pred CCEEECCHHHh
Confidence 99999999887
|
|
| >cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.5e-14 Score=138.23 Aligned_cols=106 Identities=20% Similarity=0.290 Sum_probs=84.9
Q ss_pred CCCCceeecc-cccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCcc
Q 001380 439 WLNTAPLQFR-RDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISH 517 (1089)
Q Consensus 439 ~~~g~~~~l~-~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (1089)
+++.+...+. ...+||++||+||++||++|+.++|.|.+++++|++. +.++.|.++ .
T Consensus 5 ~~~~~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~-~~~v~v~vd-----~---------------- 62 (142)
T cd02950 5 QLAASSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ-VNFVMLNVD-----N---------------- 62 (142)
T ss_pred HHhhccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC-eeEEEEEcC-----C----------------
Confidence 3444444442 2247899999999999999999999999999999764 777777541 1
Q ss_pred ceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 518 PVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 518 ~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
+....+++.|+|.++|+++++|++|+++.++.|....+.+.+.|+.+++
T Consensus 63 ----~~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 63 ----PKWLPEIDRYRVDGIPHFVFLDREGNEEGQSIGLQPKQVLAQNLDALVA 111 (142)
T ss_pred ----cccHHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHHc
Confidence 0113577899999999999999999999999999888889888888775
|
It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.2e-12 Score=130.81 Aligned_cols=283 Identities=15% Similarity=0.204 Sum_probs=199.5
Q ss_pred eeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHHhcccccccCCCCCcccccCCCCCCCCCCCCCCceEEEeecCCeE
Q 001380 536 WPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFYGKKKLLDNTPLPLSLEKDNDPRLFTSPLKFPGKLAIDILNNRL 615 (1089)
Q Consensus 536 ~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~P~~vavd~~~g~L 615 (1089)
-|..+-.+++|.+-+.-.|... .|.|+...+.... .....-..|.+|.+++ +|..
T Consensus 63 ap~dvapapdG~VWft~qg~ga-----------------iGhLdP~tGev~~-------ypLg~Ga~Phgiv~gp-dg~~ 117 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGA-----------------IGHLDPATGEVET-------YPLGSGASPHGIVVGP-DGSA 117 (353)
T ss_pred CccccccCCCCceEEecCcccc-----------------ceecCCCCCceEE-------EecCCCCCCceEEECC-CCCe
Confidence 4667777899988876544321 2333333322221 1123346899999998 8999
Q ss_pred EEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEe
Q 001380 616 FISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLA 695 (1089)
Q Consensus 616 ~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~a 695 (1089)
||+|+++ .|.++++..--++++.-+.+.+ -.+-.-..+|+.|+ ||++.. ++.--++|+..+.++++.
T Consensus 118 Witd~~~-aI~R~dpkt~evt~f~lp~~~a----------~~nlet~vfD~~G~-lWFt~q-~G~yGrLdPa~~~i~vfp 184 (353)
T COG4257 118 WITDTGL-AIGRLDPKTLEVTRFPLPLEHA----------DANLETAVFDPWGN-LWFTGQ-IGAYGRLDPARNVISVFP 184 (353)
T ss_pred eEecCcc-eeEEecCcccceEEeecccccC----------CCcccceeeCCCcc-EEEeec-cccceecCcccCceeeec
Confidence 9999987 8999998655555555542221 12345678999999 788764 444458999999999886
Q ss_pred cCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCC
Q 001380 696 GNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQP 775 (1089)
Q Consensus 696 g~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P 775 (1089)
.. +| ..|+|||+.|+| .+|++....+.|.++|+.++...++.-- +..-+.-
T Consensus 185 aP--qG--------------~gpyGi~atpdG-svwyaslagnaiaridp~~~~aev~p~P------------~~~~~gs 235 (353)
T COG4257 185 AP--QG--------------GGPYGICATPDG-SVWYASLAGNAIARIDPFAGHAEVVPQP------------NALKAGS 235 (353)
T ss_pred cC--CC--------------CCCcceEECCCC-cEEEEeccccceEEcccccCCcceecCC------------Ccccccc
Confidence 32 22 269999999998 9999998889999999887755555311 1112234
Q ss_pred ceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeC
Q 001380 776 SGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADS 855 (1089)
Q Consensus 776 ~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~ 855 (1089)
..|-.|+.| ++|+++++++++.+|++.+....... .. + . -.+|..+-+|..|.+|.+|.
T Consensus 236 Rriwsdpig-~~wittwg~g~l~rfdPs~~sW~eyp------------LP---g--s---~arpys~rVD~~grVW~sea 294 (353)
T COG4257 236 RRIWSDPIG-RAWITTWGTGSLHRFDPSVTSWIEYP------------LP---G--S---KARPYSMRVDRHGRVWLSEA 294 (353)
T ss_pred cccccCccC-cEEEeccCCceeeEeCcccccceeee------------CC---C--C---CCCcceeeeccCCcEEeecc
Confidence 567788988 99999999999999999865433210 00 0 0 13689999999999999999
Q ss_pred CCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEcc-CCcEEEEECCCCEEEEEeC
Q 001380 856 YNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQ-NGNLFIADTNNNIIRYLDL 920 (1089)
Q Consensus 856 ~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~-~G~lyVad~~n~~I~~~~~ 920 (1089)
..+.|.+|||.+-+.+.+-... ..+.-+.+++ .|.+|.++.+-.++..+..
T Consensus 295 ~agai~rfdpeta~ftv~p~pr--------------~n~gn~ql~gr~ge~W~~e~gvd~lv~~r~ 346 (353)
T COG4257 295 DAGAIGRFDPETARFTVLPIPR--------------PNSGNIQLDGRPGELWFTEAGVDALVTTRI 346 (353)
T ss_pred ccCceeecCcccceEEEecCCC--------------CCCCceeccCCCCceeecccCcceeEEEEe
Confidence 9999999999988888876431 2244567765 4579999999888877653
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.4e-12 Score=146.61 Aligned_cols=231 Identities=25% Similarity=0.361 Sum_probs=178.5
Q ss_pred CCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC--C
Q 001380 600 LKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT--E 677 (1089)
Q Consensus 600 l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~--~ 677 (1089)
+..|.++++++.+.++|+.+...++|.++|.+...+......| ..|++++++++++.+||+|. .
T Consensus 73 ~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG--------------~~P~~~~~~~~~~~vYV~n~~~~ 138 (381)
T COG3391 73 GVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG--------------LGPVGLAVDPDGKYVYVANAGNG 138 (381)
T ss_pred CccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec--------------cCCceEEECCCCCEEEEEecccC
Confidence 3789999999988899999999999999996655444333221 27999999999999999999 5
Q ss_pred CCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCC
Q 001380 678 NHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDG 757 (1089)
Q Consensus 678 n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g 757 (1089)
++.+.++|..++.+......|. .|.+++++|+|+.+|+++..++.|..+|..+..+.. ...+
T Consensus 139 ~~~vsvid~~t~~~~~~~~vG~-----------------~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~ 200 (381)
T COG3391 139 NNTVSVIDAATNKVTATIPVGN-----------------TPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVG 200 (381)
T ss_pred CceEEEEeCCCCeEEEEEecCC-----------------CcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccc
Confidence 7999999999887776654442 689999999999999999999999999977666554 2111
Q ss_pred ccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCC--CeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCcccccc
Q 001380 758 YERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSES--SSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVL 835 (1089)
Q Consensus 758 ~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~--~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~ 835 (1089)
..-..+..|.+++++++|+++||++..+ +++.+++..++.+..... ....
T Consensus 201 ---------~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~-------------------~~~~ 252 (381)
T COG3391 201 ---------SLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL-------------------PVGS 252 (381)
T ss_pred ---------cccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc-------------------cccc
Confidence 0123456799999999999999999988 699999988766543210 0112
Q ss_pred ccCceEEEEccCC-cEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEcc
Q 001380 836 LQHPLGVYCAKNG-QIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQ 901 (1089)
Q Consensus 836 l~~P~gva~~~~G-~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~ 901 (1089)
+ .|.+++++|+| .+||++...+.+..+|..+..+......+.. ....|..+++..
T Consensus 253 ~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~----------~~~~~~~~~~~~ 308 (381)
T COG3391 253 G-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNE----------ALGEPVSIAISP 308 (381)
T ss_pred C-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccccc----------ccccceecccee
Confidence 4 68999999998 5999999999999999988777776555433 344577777654
|
|
| >cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.6e-14 Score=140.53 Aligned_cols=122 Identities=20% Similarity=0.171 Sum_probs=103.2
Q ss_pred CCCCCCCCccccCC-CCCceeecccc-cCCCEEEEEEe-cCCCcchhhh-hhhHHHHHHHcCCCCE-EEEEEeCCCCCCh
Q 001380 426 TTPIVPEFPAKLDW-LNTAPLQFRRD-LKGKVVVLDFW-TYCCINCMHV-LPDLEFLEKKYKDMPF-TVVGVHSAKFDNE 500 (1089)
Q Consensus 426 ~g~~~P~f~~~~~~-~~g~~~~l~~~-~~gk~vll~Fw-a~wC~~C~~~-~p~l~~l~~~~~~~~v-~vi~v~~~~~~~~ 500 (1089)
+|+.+|+|++.... -+|+.++| ++ ++||++||.|| +.||+.|..| ++.|++.+++|.+.|+ .|++||.
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L-~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~------ 73 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNL-SELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSV------ 73 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeH-HHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEEC------
Confidence 58899999965321 13889999 77 68887777666 8999999999 9999999999998898 6999985
Q ss_pred hcHHHHHHHHHHcCC--ccceeecCChhHHHHhCCC-----------ceeEEEEECCCCcEEEEecCC
Q 001380 501 KDLEAIRNAVLRYGI--SHPVVNDGDMNLWRELGVN-----------SWPTFAVVGPNGKLLAQLAGE 555 (1089)
Q Consensus 501 ~~~~~~~~~~~~~~~--~~~v~~d~~~~l~~~~~v~-----------~~Pt~~lid~~G~i~~~~~G~ 555 (1089)
++....++|.+++++ +|+++.|.+.++++.||+. ..+.+|||| +|+|++.+...
T Consensus 74 D~~~~~~~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~~~~ 140 (155)
T cd03013 74 NDPFVMKAWGKALGAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLFVEE 140 (155)
T ss_pred CCHHHHHHHHHhhCCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEEEec
Confidence 678889999999998 8999999999999999983 257899999 79999886544
|
The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.2e-12 Score=144.97 Aligned_cols=254 Identities=16% Similarity=0.237 Sum_probs=157.0
Q ss_pred CCCCceEEEeecCCeEEEEeCCC------------CEEEEEeC---CCCEE--EEEecCCCCCCCCCCCCccccCCccee
Q 001380 600 LKFPGKLAIDILNNRLFISDSNH------------NRIVVTDL---DGNFI--VQIGSSGEEGLRDGSFDDATFNRPQGL 662 (1089)
Q Consensus 600 l~~P~~vavd~~~g~L~vsd~~~------------~~I~~~~~---~g~~~--~~i~~~g~~g~~dG~~~~~~f~~P~gl 662 (1089)
+..|..|++|+ +|+|||++..+ .||++++. +|+.. +.+... +..|.||
T Consensus 13 ~~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~--------------l~~p~Gi 77 (367)
T TIGR02604 13 LRNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEE--------------LSMVTGL 77 (367)
T ss_pred cCCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecC--------------CCCccce
Confidence 78999999997 89999998532 38888854 45532 233322 5689999
Q ss_pred EEeeCCCEEEEEECCCCEEEEEECCCC------eEEEEec-CCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC
Q 001380 663 AYNAKKNLLYVADTENHALREIDFVND------TVRTLAG-NGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA 735 (1089)
Q Consensus 663 a~d~~g~~lyVaD~~n~~I~~~d~~~g------~v~~~ag-~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~ 735 (1089)
++.++| |||++ ...|+++...++ ..+.+.. .+... ......+.+++++|+| .|||+..
T Consensus 78 ~~~~~G--lyV~~--~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~----------~~~~~~~~~l~~gpDG-~LYv~~G 142 (367)
T TIGR02604 78 AVAVGG--VYVAT--PPDILFLRDKDGDDKADGEREVLLSGFGGQI----------NNHHHSLNSLAWGPDG-WLYFNHG 142 (367)
T ss_pred eEecCC--EEEeC--CCeEEEEeCCCCCCCCCCccEEEEEccCCCC----------CcccccccCceECCCC-CEEEecc
Confidence 999776 99987 456887743221 4444431 11110 0012468899999987 8999876
Q ss_pred CC-------------------cEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCe
Q 001380 736 GQ-------------------HQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSS 796 (1089)
Q Consensus 736 ~~-------------------~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~ 796 (1089)
.+ +.|++++++++....++ .++.+|.|++++++| .+|++|.....
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a---------------~G~rnp~Gl~~d~~G-~l~~tdn~~~~ 206 (367)
T TIGR02604 143 NTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVA---------------HGFQNPYGHSVDSWG-DVFFCDNDDPP 206 (367)
T ss_pred cCCCceeccCCCccCcccccCceEEEEecCCCeEEEEe---------------cCcCCCccceECCCC-CEEEEccCCCc
Confidence 31 46899999888877775 457889999999988 99999986655
Q ss_pred EEEEEcCCCCeEEEecCCCCCCC---C-c--cccCCC----------------CCccccccccCceEEEEcc--------
Q 001380 797 IRALNLKTGGSRLLAGGDPIFPD---N-L--FKFGDR----------------DGMGSEVLLQHPLGVYCAK-------- 846 (1089)
Q Consensus 797 I~~~~~~~~~~~~~~g~~~~~~~---~-l--~~~g~~----------------dg~~~~~~l~~P~gva~~~-------- 846 (1089)
..++..-. .++...++. . . ..++.. .-...-.....|.|+++-.
T Consensus 207 ~~~i~~~~------~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~ 280 (367)
T TIGR02604 207 LCRVTPVA------EGGRNGYQSFNGRRYDHADRGADHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEY 280 (367)
T ss_pred eeEEcccc------cccccCCCCCCCcccccccccccccccccccccccccccccccccCCCccccEEEEeCCCcCCHHH
Confidence 54443221 000000000 0 0 000000 0000001123588888862
Q ss_pred CCcEEEEeCCCCEEEEEeCC--CCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCC
Q 001380 847 NGQIYVADSYNHKIKKLDPA--SNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNN 912 (1089)
Q Consensus 847 ~G~lyVaD~~n~~I~~~d~~--~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n 912 (1089)
+|+++|++...++|.++..+ +..+..-. ..+..+ ...+.+|..|+++++|.|||+|..+
T Consensus 281 ~g~~fv~~~~~~~v~~~~l~~~g~~~~~~~----~~~l~~---~~~~~rp~dv~~~pDG~Lyv~d~~~ 341 (367)
T TIGR02604 281 RGLLLVGDAHGQLIVRYSLEPKGAGFKGER----PEFLRS---NDTWFRPVNVTVGPDGALYVSDWYD 341 (367)
T ss_pred CCCEEeeeccCCEEEEEEeecCCCccEeec----CceEec---CCCcccccceeECCCCCEEEEEecc
Confidence 47899999999999987643 33222110 011110 1134689999999999999999433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668 | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-13 Score=141.00 Aligned_cols=95 Identities=21% Similarity=0.303 Sum_probs=84.9
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCC-hHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEE
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSAD-RIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECI 243 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~-~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v 243 (1089)
.++||+.++|++|+++|++++|+||+. ...+..+++.+++. .+ ....||+|++|..+++++|+++++|+
T Consensus 43 ~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~-~~---------~~~~KP~p~~~~~~l~~~~~~~~~~l 112 (170)
T TIGR01668 43 EAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIP-VL---------PHAVKPPGCAFRRAHPEMGLTSEQVA 112 (170)
T ss_pred CcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCE-EE---------cCCCCCChHHHHHHHHHcCCCHHHEE
Confidence 568999999999999999999999988 57777777888874 22 13469999999999999999999999
Q ss_pred EEcCCh-hhHHHHHHcCCeEEEEcCCC
Q 001380 244 VIEDAL-AGVQAAKAAQMRCIAVTTTL 269 (1089)
Q Consensus 244 ~VGD~~-~Di~aA~~aG~~~i~V~~g~ 269 (1089)
||||+. +|+++|+++||.+++|.+|.
T Consensus 113 ~IGDs~~~Di~aA~~aGi~~i~v~~g~ 139 (170)
T TIGR01668 113 VVGDRLFTDVMGGNRNGSYTILVEPLV 139 (170)
T ss_pred EECCcchHHHHHHHHcCCeEEEEccCc
Confidence 999998 89999999999999999987
|
This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.6e-11 Score=134.23 Aligned_cols=263 Identities=15% Similarity=0.191 Sum_probs=175.4
Q ss_pred CCeEEEEeCCC----CEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC---------C
Q 001380 612 NNRLFISDSNH----NRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT---------E 677 (1089)
Q Consensus 612 ~g~L~vsd~~~----~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~---------~ 677 (1089)
..++||+|... ++|.++|.+ ++++.+|..+ ..|+++ ++|+|+.||||.+ .
T Consensus 12 ~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G---------------~~P~~~-~spDg~~lyva~~~~~R~~~G~~ 75 (352)
T TIGR02658 12 ARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGG---------------FLPNPV-VASDGSFFAHASTVYSRIARGKR 75 (352)
T ss_pred CCEEEEECCcccccCceEEEEECCCCEEEEEEEcc---------------CCCcee-ECCCCCEEEEEeccccccccCCC
Confidence 56899999874 899999987 6666676654 278997 9999999999999 8
Q ss_pred CCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC-CcEEEEEECCCCeEEE-EeC
Q 001380 678 NHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG-QHQIWEHSTVDGVTRA-FSG 755 (1089)
Q Consensus 678 n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~-~~~I~~~~~~~g~~~~-~~g 755 (1089)
.+.|.+||..+.++..-...+.. ...+....|+.++++++|+.|||++.. .+.|-.+|..++.+.. +.-
T Consensus 76 ~d~V~v~D~~t~~~~~~i~~p~~---------p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 76 TDYVEVIDPQTHLPIADIELPEG---------PRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred CCEEEEEECccCcEEeEEccCCC---------chhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence 89999999988765543322211 011234688999999999999999977 8889999988765432 110
Q ss_pred -CCc-----------cccCCCCCCC---------------------CccccCCceEEEcC-CCCEEEEEeCCCCeEEEEE
Q 001380 756 -DGY-----------ERNLNGSSSL---------------------NTSFAQPSGISLSP-DFMEIYVADSESSSIRALN 801 (1089)
Q Consensus 756 -~g~-----------~~~~~g~~~~---------------------~~~~~~P~glav~~-~g~~lyvad~~~~~I~~~~ 801 (1089)
.+. ....+|.... ..-|.+| .+.+ +|..+|++.. ++|+.++
T Consensus 147 p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e--G~V~~id 221 (352)
T TIGR02658 147 PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYT--GKIFQID 221 (352)
T ss_pred CCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC---ceEcCCCcEEEEecC--CeEEEEe
Confidence 000 0011111110 0112445 3344 6767777765 8999999
Q ss_pred cCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceE---EEEccCC-cEEEEeC---------CCCEEEEEeCCCC
Q 001380 802 LKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLG---VYCAKNG-QIYVADS---------YNHKIKKLDPASN 868 (1089)
Q Consensus 802 ~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~g---va~~~~G-~lyVaD~---------~n~~I~~~d~~~~ 868 (1089)
+.+........ -.++.++.... . -.|-| ++++++| ++||+.. ..+.|.++|..++
T Consensus 222 ~~~~~~~~~~~------~~~~~~~~~~~---~---wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~ 289 (352)
T TIGR02658 222 LSSGDAKFLPA------IEAFTEAEKAD---G---WRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG 289 (352)
T ss_pred cCCCcceecce------eeecccccccc---c---cCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC
Confidence 77655443211 11222221100 0 12333 9999886 6999542 2368999999988
Q ss_pred eEEEEeccCCCCCCCCcccccccCCCceEEEccCCc--EEEEECCCCEEEEEeCCCCCceEEEEe
Q 001380 869 RVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN--LFIADTNNNIIRYLDLNKEEPELQTLE 931 (1089)
Q Consensus 869 ~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~--lyVad~~n~~I~~~~~~~~~~~~~~l~ 931 (1089)
++......| .+|.+|++.++|+ ||+++..++.|.++|..+. ..+.++.
T Consensus 290 kvi~~i~vG--------------~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~-k~i~~i~ 339 (352)
T TIGR02658 290 KRLRKIELG--------------HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG-KELSSVN 339 (352)
T ss_pred eEEEEEeCC--------------CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC-eEEeeec
Confidence 776654443 3599999999886 7889888999999999887 3456653
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.7e-11 Score=132.07 Aligned_cols=252 Identities=16% Similarity=0.194 Sum_probs=176.6
Q ss_pred CceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEE
Q 001380 603 PGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHAL 681 (1089)
Q Consensus 603 P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I 681 (1089)
|.++++++.++.+|++....++|.+++.. ++.+..+... ..|..++++++|+.+|++...++.|
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~---------------~~~~~~~~~~~g~~l~~~~~~~~~l 97 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG---------------PDPELFALHPNGKILYIANEDDNLV 97 (300)
T ss_pred CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC---------------CCccEEEECCCCCEEEEEcCCCCeE
Confidence 56789988666788998888999999986 5555444321 1357889999999899998777899
Q ss_pred EEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCcccc
Q 001380 682 REIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERN 761 (1089)
Q Consensus 682 ~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~ 761 (1089)
+.+|+.++........+ ..|.+++++|+|..++++......+..+|..++........
T Consensus 98 ~~~d~~~~~~~~~~~~~-----------------~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~----- 155 (300)
T TIGR03866 98 TVIDIETRKVLAEIPVG-----------------VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV----- 155 (300)
T ss_pred EEEECCCCeEEeEeeCC-----------------CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-----
Confidence 99999875533222111 25788999999988777776656677788776655432110
Q ss_pred CCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeE-EEecCCCCCCCCccccCCCCCccccccccCce
Q 001380 762 LNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR-LLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPL 840 (1089)
Q Consensus 762 ~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~-~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~ 840 (1089)
-..|..++++++|..||++....+.|+.++..++... .+.... .+.. ..-..|.
T Consensus 156 ----------~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~---------~~~~------~~~~~~~ 210 (300)
T TIGR03866 156 ----------DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEI---------PGVH------PEAVQPV 210 (300)
T ss_pred ----------CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecc---------cccc------cccCCcc
Confidence 1247789999999888888767789999999866432 121000 0000 0012578
Q ss_pred EEEEccCCc-EEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEEEECCCCEEEEE
Q 001380 841 GVYCAKNGQ-IYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADTNNNIIRYL 918 (1089)
Q Consensus 841 gva~~~~G~-lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~~n~~I~~~ 918 (1089)
+++++++|+ +|++...+++|.++|..++.+......+ ..|.+++++++|. ||++...++.|.++
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--------------~~~~~~~~~~~g~~l~~~~~~~~~i~v~ 276 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVG--------------QRVWQLAFTPDEKYLLTTNGVSNDVSVI 276 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeC--------------CCcceEEECCCCCEEEEEcCCCCeEEEE
Confidence 899999986 6888877889999999877765433211 2378999999886 77777778999999
Q ss_pred eCCCCCceEEEEe
Q 001380 919 DLNKEEPELQTLE 931 (1089)
Q Consensus 919 ~~~~~~~~~~~l~ 931 (1089)
++.+. ..+.++.
T Consensus 277 d~~~~-~~~~~~~ 288 (300)
T TIGR03866 277 DVAAL-KVIKSIK 288 (300)
T ss_pred ECCCC-cEEEEEE
Confidence 99987 2456665
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PLN02645 phosphoglycolate phosphatase | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.9e-14 Score=161.55 Aligned_cols=121 Identities=17% Similarity=0.160 Sum_probs=91.6
Q ss_pred HHHHHHHhCCCeEEEEcCCChHh-HHHHHHHCCCCCCCccEEEEcCCcc---CCCCCHHHHHHHHHHcCCCCCcEEEEcC
Q 001380 172 ELINQCKSKGLKVAVASSADRIK-VDANLAAAGLPVSMFDAIVSADAFE---NLKPAPDIFLSASKILNVPTSECIVIED 247 (1089)
Q Consensus 172 ~lL~~Lk~~Gi~vaIvSn~~~~~-~~~~l~~~gl~~~~fd~i~~~~~~~---~~KP~~~~~~~~l~~lgv~p~~~v~VGD 247 (1089)
.....|++++-.++|+||.+... ....+...|.. .+|+.+.++.... .+||+|.+|..+++++++++++++||||
T Consensus 177 ~a~~~l~~~~g~~~i~tn~d~~~~~~~~~~~~g~g-~~~~~i~~~~~~~~~~~gKP~p~~~~~a~~~~~~~~~~~~~VGD 255 (311)
T PLN02645 177 YATLCIRENPGCLFIATNRDAVTHLTDAQEWAGAG-SMVGAIKGSTEREPLVVGKPSTFMMDYLANKFGIEKSQICMVGD 255 (311)
T ss_pred HHHHHHhcCCCCEEEEeCCCCCCCCCCCCCccchH-HHHHHHHHHhCCCcccCCCChHHHHHHHHHHcCCCcccEEEEcC
Confidence 34455554344678888876533 22333445663 6777776655433 3699999999999999999999999999
Q ss_pred Ch-hhHHHHHHcCCeEEEEcCCC-CHHHHhh----cCCcEEecCcccCCHHHHH
Q 001380 248 AL-AGVQAAKAAQMRCIAVTTTL-SEERLKE----ASPSLIRKEIGSVSLNDIL 295 (1089)
Q Consensus 248 ~~-~Di~aA~~aG~~~i~V~~g~-~~~~l~~----~~~d~vi~dl~el~i~~ll 295 (1089)
++ +||.+|+++||++++|.+|. ..+++.+ ..|+++++++.++ .+++
T Consensus 256 ~~~~Di~~A~~aG~~~ilV~~G~~~~~~~~~~~~~~~pd~~~~~~~~l--~~~~ 307 (311)
T PLN02645 256 RLDTDILFGQNGGCKTLLVLSGVTSESMLLSPENKIQPDFYTSKISDF--LTLK 307 (311)
T ss_pred CcHHHHHHHHHcCCCEEEEcCCCCCHHHHHhccCCCCCCEEECCHHHH--HHHh
Confidence 98 99999999999999999998 5666644 5799999999887 4444
|
|
| >TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.2e-13 Score=139.98 Aligned_cols=93 Identities=24% Similarity=0.183 Sum_probs=81.2
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCC--------------------ccCCCCC
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADA--------------------FENLKPA 224 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~--------------------~~~~KP~ 224 (1089)
.++||+.++|+.|+++|++++|+||+....++..++++++. .+|+.+++++. ...+.+|
T Consensus 72 ~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~-~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~K 150 (188)
T TIGR01489 72 PIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEK-DVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGCCK 150 (188)
T ss_pred CCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCCh-hheeEEeccCceECCCCcEEEecCCCCccCcCCCCCCH
Confidence 78999999999999999999999999999999999999996 99999997643 1234567
Q ss_pred HHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCe
Q 001380 225 PDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMR 261 (1089)
Q Consensus 225 ~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~ 261 (1089)
++++++..++. +++++||||+.+|+.+|+++++-
T Consensus 151 ~~~~~~~~~~~---~~~~i~iGD~~~D~~aa~~~d~~ 184 (188)
T TIGR01489 151 GKVIHKLSEPK---YQHIIYIGDGVTDVCPAKLSDVV 184 (188)
T ss_pred HHHHHHHHhhc---CceEEEECCCcchhchHhcCCcc
Confidence 88888887765 79999999999999999999753
|
Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact. |
| >COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-13 Score=131.28 Aligned_cols=92 Identities=29% Similarity=0.404 Sum_probs=83.6
Q ss_pred CCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEE
Q 001380 166 GFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVI 245 (1089)
Q Consensus 166 ~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~V 245 (1089)
..|.+++.+.+++++|+++.|+||+....+...++++|++ .|. ...||.+..|+++++++++++++|+||
T Consensus 47 ~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~-----fi~-----~A~KP~~~~fr~Al~~m~l~~~~vvmV 116 (175)
T COG2179 47 ATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVP-----FIY-----RAKKPFGRAFRRALKEMNLPPEEVVMV 116 (175)
T ss_pred CCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCc-----eee-----cccCccHHHHHHHHHHcCCChhHEEEE
Confidence 4566778888899999999999999999999999999997 333 347999999999999999999999999
Q ss_pred cCCh-hhHHHHHHcCCeEEEEcC
Q 001380 246 EDAL-AGVQAAKAAQMRCIAVTT 267 (1089)
Q Consensus 246 GD~~-~Di~aA~~aG~~~i~V~~ 267 (1089)
||.+ +|+.+|+++||+||+|-.
T Consensus 117 GDqL~TDVlggnr~G~~tIlV~P 139 (175)
T COG2179 117 GDQLFTDVLGGNRAGMRTILVEP 139 (175)
T ss_pred cchhhhhhhcccccCcEEEEEEE
Confidence 9999 999999999999999965
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.5e-11 Score=127.95 Aligned_cols=290 Identities=16% Similarity=0.175 Sum_probs=185.5
Q ss_pred HHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHHhcccccccCCCCCcccccCCCCCCCCCCCCCCceEEE
Q 001380 529 RELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFYGKKKLLDNTPLPLSLEKDNDPRLFTSPLKFPGKLAI 608 (1089)
Q Consensus 529 ~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~P~~vav 608 (1089)
+.....+-|+.+.++++++.++........-. -+.-.+++.++-+.+.+ ....+...|.-|++
T Consensus 34 ~~v~~~~nptyl~~~~~~~~LY~v~~~~~~gg------------vaay~iD~~~G~Lt~ln-----~~~~~g~~p~yvsv 96 (346)
T COG2706 34 QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGG------------VAAYRIDPDDGRLTFLN-----RQTLPGSPPCYVSV 96 (346)
T ss_pred hhccccCCCceEEECCCCCEEEEEEecCCcCc------------EEEEEEcCCCCeEEEee-----ccccCCCCCeEEEE
Confidence 34445677999999999998887543322000 00111222222222211 12344566799999
Q ss_pred eecCCeEEEEeCCCCEEEEE--eCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEEC
Q 001380 609 DILNNRLFISDSNHNRIVVT--DLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDF 686 (1089)
Q Consensus 609 d~~~g~L~vsd~~~~~I~~~--~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~ 686 (1089)
|+.+..||+++.+.++|.++ ..+|.....++..-..|. |+-....-.+++..-++|+|++|+++|-+..+|..+++
T Consensus 97 d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~--~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 97 DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGS--GPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred CCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCC--CCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 98777899999988888776 445765443322111111 11112223457889999999999999999999999999
Q ss_pred CCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEE--EEECCCCeEEEEeCCCccccCCC
Q 001380 687 VNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIW--EHSTVDGVTRAFSGDGYERNLNG 764 (1089)
Q Consensus 687 ~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~--~~~~~~g~~~~~~g~g~~~~~~g 764 (1089)
+.|.++.....-.. +=..|+.|+|+|+++..|+...-+++|- .|+...|+...+........
T Consensus 175 ~dg~L~~~~~~~v~-------------~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~--- 238 (346)
T COG2706 175 DDGKLTPADPAEVK-------------PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPE--- 238 (346)
T ss_pred ccCccccccccccC-------------CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcc---
Confidence 98877665432221 1237999999999999999998888765 45555566665543211110
Q ss_pred CCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEE--cCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEE
Q 001380 765 SSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALN--LKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGV 842 (1089)
Q Consensus 765 ~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~--~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gv 842 (1089)
.-.+..+...|.+++||+.||+++.+.++|..|. +.++....+ +.. ..--+.|.+.
T Consensus 239 ---dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~-~~~------------------~teg~~PR~F 296 (346)
T COG2706 239 ---DFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELV-GIT------------------PTEGQFPRDF 296 (346)
T ss_pred ---ccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEE-EEe------------------ccCCcCCccc
Confidence 0122345678999999999999999999876654 444444333 211 1113579999
Q ss_pred EEccCCc-EEEEeCC--CCEEEEEeCCCCeEEEEec
Q 001380 843 YCAKNGQ-IYVADSY--NHKIKKLDPASNRVSTLAG 875 (1089)
Q Consensus 843 a~~~~G~-lyVaD~~--n~~I~~~d~~~~~v~t~~g 875 (1089)
.+++.|+ |+++.-. +=.|.++|+.+|.++.+.-
T Consensus 297 ~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 297 NINPSGRFLIAANQKSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred eeCCCCCEEEEEccCCCcEEEEEEcCCCceEEeccc
Confidence 9999886 5566433 4455677999999988753
|
|
| >cd01427 HAD_like Haloacid dehalogenase-like hydrolases | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-13 Score=134.83 Aligned_cols=100 Identities=34% Similarity=0.514 Sum_probs=92.9
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCC----------------CCCHHHH
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENL----------------KPAPDIF 228 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~----------------KP~~~~~ 228 (1089)
.+++++.++|+.|+++|++++|+|++.+..++..++.+++. .+++.+++.+..... ||++..+
T Consensus 24 ~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (139)
T cd01427 24 ELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLD-DYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKL 102 (139)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCc-hhhhheeccchhhhhcccccccccccccccCCCCHHHH
Confidence 78999999999999999999999999999999999999996 788888887765544 9999999
Q ss_pred HHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEE
Q 001380 229 LSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAV 265 (1089)
Q Consensus 229 ~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V 265 (1089)
..++++++..++++++|||+.+|+++++++|+.+++|
T Consensus 103 ~~~~~~~~~~~~~~~~igD~~~d~~~~~~~g~~~i~v 139 (139)
T cd01427 103 LAALKLLGVDPEEVLMVGDSLNDIEMAKAAGGLGVAV 139 (139)
T ss_pred HHHHHHcCCChhhEEEeCCCHHHHHHHHHcCCceeeC
Confidence 9999999999999999999999999999999999875
|
The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases. |
| >KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.2e-13 Score=132.69 Aligned_cols=182 Identities=15% Similarity=0.188 Sum_probs=127.6
Q ss_pred CceEEEEecCCcccCCchHHHHHHH----HH-HHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCC-CCCHHHHHHHHH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAV----DV-FAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVK-GFDSEAAKKRFF 151 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~----~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 151 (1089)
.+++++||+|.||+.....+..++. +. .+++|+.... ...+.-.-...+...+....... ..+.++....+.
T Consensus 14 ~~~~l~FDiDdtLYp~St~i~~~~~~nI~~f~~eklgi~~e~--a~~L~~~~yk~YG~t~aGL~~~~~~~d~deY~~~V~ 91 (244)
T KOG3109|consen 14 NYKCLFFDIDDTLYPLSTGIQLMMRNNIQEFFVEKLGISEEE--AEELRESLYKEYGLTMAGLKAVGYIFDADEYHRFVH 91 (244)
T ss_pred cceEEEEecccccccCchhHHHHHHHHHHHHHHHHhCCChhh--hHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHhh
Confidence 6899999999999987766555554 33 3346765332 21111111112222222221111 112333333333
Q ss_pred HHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCcc------CCCCCH
Q 001380 152 EIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFE------NLKPAP 225 (1089)
Q Consensus 152 ~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~------~~KP~~ 225 (1089)
..+ +.....+-+-.+++|-.|+.++ ..+.||+.+.++.++|+++|+. +.|+.|++.+-.. ..||.+
T Consensus 92 ~~L-----Plq~LkPD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~Lk~LGie-DcFegii~~e~~np~~~~~vcKP~~ 163 (244)
T KOG3109|consen 92 GRL-----PLQDLKPDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRILKKLGIE-DCFEGIICFETLNPIEKTVVCKPSE 163 (244)
T ss_pred ccC-----cHhhcCCCHHHHHHHHhCcccc--EEEecCCcHHHHHHHHHHhChH-HhccceeEeeccCCCCCceeecCCH
Confidence 221 1111255677899999999875 8899999999999999999996 9999999986433 479999
Q ss_pred HHHHHHHHHcCCC-CCcEEEEcCChhhHHHHHHcCCeEEEEcCCC
Q 001380 226 DIFLSASKILNVP-TSECIVIEDALAGVQAAKAAQMRCIAVTTTL 269 (1089)
Q Consensus 226 ~~~~~~l~~lgv~-p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~ 269 (1089)
++|+.+++..|+. |.+++|+.|+..+|.+|++.||++++|....
T Consensus 164 ~afE~a~k~agi~~p~~t~FfDDS~~NI~~ak~vGl~tvlv~~~~ 208 (244)
T KOG3109|consen 164 EAFEKAMKVAGIDSPRNTYFFDDSERNIQTAKEVGLKTVLVGREH 208 (244)
T ss_pred HHHHHHHHHhCCCCcCceEEEcCchhhHHHHHhccceeEEEEeee
Confidence 9999999999997 9999999999999999999999999997743
|
|
| >KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.8e-14 Score=136.32 Aligned_cols=197 Identities=19% Similarity=0.184 Sum_probs=139.1
Q ss_pred CCCCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 001380 75 KWGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIY 154 (1089)
Q Consensus 75 ~~~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (1089)
.+.+.++|+||+|.|++..+ .+.++.+..|+.-...++++.++.+...|.+.+..+..+...... ..
T Consensus 12 ~~~~~~aVcFDvDSTvi~eE-----gIdelA~~~G~~~~Va~~T~rAMng~~~F~eaL~~Rl~llqp~~~--------qv 78 (227)
T KOG1615|consen 12 LWRSADAVCFDVDSTVIQEE-----GIDELAAYCGVGEAVAEVTRRAMNGEADFQEALAARLSLLQPLQV--------QV 78 (227)
T ss_pred HHHhcCeEEEecCcchhHHh-----hHHHHHHHhCchHHHHHHHHHHhCCCCcHHHHHHHHHHHhcccHH--------HH
Confidence 45667999999999999766 677888888888888888888888877787777766544321211 11
Q ss_pred HHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCC--C-----c--cEEEEc-C---CccCC
Q 001380 155 LDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVS--M-----F--DAIVSA-D---AFENL 221 (1089)
Q Consensus 155 ~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~--~-----f--d~i~~~-~---~~~~~ 221 (1089)
....... ...+.||+++|+.+|+++|..++++|++++.++..+...+|++.. | | +.-+.+ + ....+
T Consensus 79 ~~~v~~~-k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsds 157 (227)
T KOG1615|consen 79 EQFVIKQ-KPTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDS 157 (227)
T ss_pred HHHHhcC-CCccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccC
Confidence 1111121 347899999999999999999999999999999999999999821 1 1 122222 2 22235
Q ss_pred CCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccC
Q 001380 222 KPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 222 KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el 289 (1089)
--+++.+..+.+ +.+.+.++||||+.||++|... +..+++. .|+...+-...++.|.+.+|..|
T Consensus 158 ggKa~~i~~lrk--~~~~~~~~mvGDGatDlea~~p-a~afi~~-~g~~~r~~vk~nak~~~~~f~~L 221 (227)
T KOG1615|consen 158 GGKAEVIALLRK--NYNYKTIVMVGDGATDLEAMPP-ADAFIGF-GGNVIREGVKANAKWYVTDFYVL 221 (227)
T ss_pred CccHHHHHHHHh--CCChheeEEecCCccccccCCc-hhhhhcc-CCceEcHhhHhccHHHHHHHHHH
Confidence 567788877777 7777999999999999998877 3333333 23333333445677777777655
|
|
| >COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.4e-13 Score=131.82 Aligned_cols=154 Identities=19% Similarity=0.263 Sum_probs=120.0
Q ss_pred CCCCCCCCCCccccCCCCCc---eeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCC
Q 001380 424 RKTTPIVPEFPAKLDWLNTA---PLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDN 499 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~---~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~ 499 (1089)
..+|+.+|+|+.+... .|. ++++ +++.||++||.|| +...+.|..|+..+.+++++|++.|+++||+|+ +.
T Consensus 3 ~lIg~~aP~F~~~a~~-~~~~~~~i~l-~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~---Ds 77 (194)
T COG0450 3 SLIGKKAPDFTANAVL-GGEIFEEITL-SDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVST---DS 77 (194)
T ss_pred cccCCcCCCcEEEEEe-cCceeeEEec-hhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEec---Cc
Confidence 3589999999975332 553 8999 8888899999999 788899999999999999999999999999998 66
Q ss_pred hhcHHHHHHHHHHc-C---CccceeecCChhHHHHhCCC------ceeEEEEECCCCcEEEEecCCC----chhhHHHHH
Q 001380 500 EKDLEAIRNAVLRY-G---ISHPVVNDGDMNLWRELGVN------SWPTFAVVGPNGKLLAQLAGEG----HRKDLDDLV 565 (1089)
Q Consensus 500 ~~~~~~~~~~~~~~-~---~~~~v~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~G~~----~~~~l~~~l 565 (1089)
.....+|++...+. + ++||++.|.+++++++||+. ++..+|||||+|+|+....-.. +.+++.+.|
T Consensus 78 ~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~i 157 (194)
T COG0450 78 VFSHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVI 157 (194)
T ss_pred HHHHHHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHH
Confidence 77788888776553 3 68999999999999999984 5788999999999998844332 345555555
Q ss_pred HHHHHHhcccccccCCCC
Q 001380 566 EAALLFYGKKKLLDNTPL 583 (1089)
Q Consensus 566 ~~~l~~~~~~~~l~~~~~ 583 (1089)
+.+ +.....|.+..-.+
T Consensus 158 dAl-q~~~~hg~vcPanW 174 (194)
T COG0450 158 DAL-QFVAKHGEVCPANW 174 (194)
T ss_pred HHH-HHHHHhCCCccCCC
Confidence 443 33333355444433
|
|
| >KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-13 Score=130.12 Aligned_cols=90 Identities=26% Similarity=0.394 Sum_probs=82.3
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+++|||+|||+||+||+...|.|+++..+|.++ +.+.-|.+ |...++|.+|
T Consensus 60 S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~-~k~~kvdt---------------------------D~~~ela~~Y 111 (150)
T KOG0910|consen 60 SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK-FKLYKVDT---------------------------DEHPELAEDY 111 (150)
T ss_pred cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe-EEEEEEcc---------------------------ccccchHhhc
Confidence 4689999999999999999999999999999765 88888854 7788999999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
+|.++||++++ ++|+.+.+..|..+.+.+.++|+..+.
T Consensus 112 ~I~avPtvlvf-knGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 112 EISAVPTVLVF-KNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred ceeeeeEEEEE-ECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 99999999999 899999999999999999999988764
|
|
| >TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457 | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-13 Score=149.67 Aligned_cols=120 Identities=15% Similarity=0.211 Sum_probs=86.0
Q ss_pred CccHHHHHHHHHhCCCeEEEEcCCChHhHHH--HH-HHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEE
Q 001380 167 FPGALELINQCKSKGLKVAVASSADRIKVDA--NL-AAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECI 243 (1089)
Q Consensus 167 ~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~--~l-~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v 243 (1089)
++.....+..|+ +|.+ .|+||.+...... .+ ..-.+ ...++...+.+.+..+||+|.+|+.+++++++++++++
T Consensus 123 y~~l~~a~~~l~-~g~~-~i~tN~D~~~~~~~~~~~~~G~~-~~~i~~~~~~~~~~~gKP~~~~~~~~~~~~~~~~~~~~ 199 (249)
T TIGR01457 123 YEKFATATLAIR-KGAH-FIGTNGDLAIPTERGLLPGNGSL-ITVLEVATGVKPVYIGKPNAIIMEKAVEHLGTEREETL 199 (249)
T ss_pred HHHHHHHHHHHH-CCCe-EEEECCCCCCCCCCCCCCCcHHH-HHHHHHHhCCCccccCCChHHHHHHHHHHcCCCcccEE
Confidence 444555566664 4565 7777765533211 00 00011 12234445566677789999999999999999999999
Q ss_pred EEcCCh-hhHHHHHHcCCeEEEEcCCC-CHHHHhh--cCCcEEecCcccC
Q 001380 244 VIEDAL-AGVQAAKAAQMRCIAVTTTL-SEERLKE--ASPSLIRKEIGSV 289 (1089)
Q Consensus 244 ~VGD~~-~Di~aA~~aG~~~i~V~~g~-~~~~l~~--~~~d~vi~dl~el 289 (1089)
||||++ +||.+|+++||++++|.+|. ..+++.. ..|+++++++.++
T Consensus 200 ~VGD~~~~Di~~a~~~G~~~v~v~~G~~~~~~~~~~~~~pd~~v~~l~~~ 249 (249)
T TIGR01457 200 MVGDNYLTDIRAGIDAGIDTLLVHTGVTKAEEVAGLPIAPTHVVSSLAEW 249 (249)
T ss_pred EECCCchhhHHHHHHcCCcEEEEcCCCCCHHHHhcCCCCCCEEeCChhhC
Confidence 999997 89999999999999999998 5555554 5799999988764
|
This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those. |
| >COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.8e-13 Score=141.94 Aligned_cols=211 Identities=24% Similarity=0.278 Sum_probs=133.4
Q ss_pred CCCCceEEEEecCCcccCCchHHHHHHHH--HHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHH--HHHHH
Q 001380 75 KWGKVSAVLFDMDGVLCNSEEPSRRAAVD--VFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEA--AKKRF 150 (1089)
Q Consensus 75 ~~~~~k~ViFD~DGTL~d~~~~~~~a~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 150 (1089)
++..+++++||+||||+++...+..+.+. .+++.|++ .-.+++...++.+.+.+.+....+.+. ..+. .....
T Consensus 4 ~~~~y~~~l~DlDGvl~~G~~~ipga~e~l~~L~~~g~~--~iflTNn~~~s~~~~~~~L~~~~~~~~-~~~~i~TS~~a 80 (269)
T COG0647 4 VMDKYDGFLFDLDGVLYRGNEAIPGAAEALKRLKAAGKP--VIFLTNNSTRSREVVAARLSSLGGVDV-TPDDIVTSGDA 80 (269)
T ss_pred hhhhcCEEEEcCcCceEeCCccCchHHHHHHHHHHcCCe--EEEEeCCCCCCHHHHHHHHHhhcCCCC-CHHHeecHHHH
Confidence 45678999999999999999877766544 34444543 345666777777777777766555432 2222 22222
Q ss_pred HHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcC----------C----ChHhHHHHHHHC--CCC--CCCccEE
Q 001380 151 FEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASS----------A----DRIKVDANLAAA--GLP--VSMFDAI 212 (1089)
Q Consensus 151 ~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn----------~----~~~~~~~~l~~~--gl~--~~~fd~i 212 (1089)
...|..+..+. .....-|...+.+.|+..|+.+.--.+ - ..+.....+..+ |.. +..-|.+
T Consensus 81 t~~~l~~~~~~-~kv~viG~~~l~~~l~~~G~~~~~~~~~~~~d~Vv~g~d~~~~~e~l~~a~~~i~~g~~fI~tNpD~~ 159 (269)
T COG0647 81 TADYLAKQKPG-KKVYVIGEEGLKEELEGAGFELVDEEEPARVDAVVVGLDRTLTYEKLAEALLAIAAGAPFIATNPDLT 159 (269)
T ss_pred HHHHHHhhCCC-CEEEEECCcchHHHHHhCCcEEeccCCCCcccEEEEecCCCCCHHHHHHHHHHHHcCCcEEEeCCCcc
Confidence 33333332221 124455666677777777653332111 1 112222222222 221 0001222
Q ss_pred EEc---------------------CCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCCh-hhHHHHHHcCCeEEEEcCCCC
Q 001380 213 VSA---------------------DAFENLKPAPDIFLSASKILNVPTSECIVIEDAL-AGVQAAKAAQMRCIAVTTTLS 270 (1089)
Q Consensus 213 ~~~---------------------~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~~ 270 (1089)
+-. +....+||.+.+|+.++++++..+++++||||++ +||++|+++||.+++|.+|.+
T Consensus 160 ~p~~~g~~pgaGai~~~~~~~tg~~~~~~GKP~~~i~~~al~~~~~~~~~~~mVGD~~~TDI~~a~~~G~~t~LV~TGv~ 239 (269)
T COG0647 160 VPTERGLRPGAGAIAALLEQATGREPTVIGKPSPAIYEAALEKLGLDRSEVLMVGDRLDTDILGAKAAGLDTLLVLTGVS 239 (269)
T ss_pred ccCCCCCccCcHHHHHHHHHhhCCcccccCCCCHHHHHHHHHHhCCCcccEEEEcCCchhhHHHHHHcCCCEEEEccCCC
Confidence 211 1123589999999999999999999999999999 999999999999999999984
Q ss_pred -HHHHh--hcCCcEEecCcccC
Q 001380 271 -EERLK--EASPSLIRKEIGSV 289 (1089)
Q Consensus 271 -~~~l~--~~~~d~vi~dl~el 289 (1089)
.+++. ...|+|+.+++.++
T Consensus 240 ~~~~~~~~~~~p~~v~~sl~~~ 261 (269)
T COG0647 240 SAEDLDRAEVKPTYVVDSLAEL 261 (269)
T ss_pred ChhhhhhhccCCcchHhhHHHH
Confidence 55444 35789999999888
|
|
| >PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.8e-13 Score=147.07 Aligned_cols=100 Identities=17% Similarity=0.212 Sum_probs=88.3
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCC---------------ChHhHHHHHHHCCCCCCCccEEE-E----cCCccCCCCC
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSA---------------DRIKVDANLAAAGLPVSMFDAIV-S----ADAFENLKPA 224 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~---------------~~~~~~~~l~~~gl~~~~fd~i~-~----~~~~~~~KP~ 224 (1089)
.++||+.++|++|+++|++++|+||. ....+..+++.+++. |+.++ + +++....||+
T Consensus 30 ~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl~---fd~i~i~~~~~sd~~~~rKP~ 106 (354)
T PRK05446 30 AFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGIK---FDEVLICPHFPEDNCSCRKPK 106 (354)
T ss_pred eECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCCc---eeeEEEeCCcCcccCCCCCCC
Confidence 78999999999999999999999995 244566778888884 66654 4 3566788999
Q ss_pred HHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcC
Q 001380 225 PDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTT 267 (1089)
Q Consensus 225 ~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~ 267 (1089)
|.++..+++++++++++++||||+.+|+++|+++||++|+|+.
T Consensus 107 p~~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~~I~v~~ 149 (354)
T PRK05446 107 TGLVEEYLAEGAIDLANSYVIGDRETDVQLAENMGIKGIRYAR 149 (354)
T ss_pred HHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCeEEEEEC
Confidence 9999999999999999999999999999999999999999965
|
|
| >TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.7e-13 Score=140.73 Aligned_cols=121 Identities=20% Similarity=0.083 Sum_probs=91.1
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCc---cEEEEcCCccCCCCCHHHH----------HHH
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMF---DAIVSADAFENLKPAPDIF----------LSA 231 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~f---d~i~~~~~~~~~KP~~~~~----------~~~ 231 (1089)
.++||+.++|+.|+++|++++|+|++....++.+++.++.. .++ +.++.++.....||.+..+ ..+
T Consensus 70 ~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~-~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~~~ 148 (214)
T TIGR03333 70 EIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEK-DRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKPSL 148 (214)
T ss_pred cccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCc-ccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHHHH
Confidence 78999999999999999999999999999999999988553 444 3455566666778887765 477
Q ss_pred HHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhh-cCCcEEecCcccC
Q 001380 232 SKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKE-ASPSLIRKEIGSV 289 (1089)
Q Consensus 232 l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~-~~~d~vi~dl~el 289 (1089)
+++++..+++++||||+.+|+.+|+.||+ +.+ .+.-...... ..+...+.+|.|+
T Consensus 149 l~~~~~~~~~~i~iGDg~~D~~~a~~Ad~--~~a-r~~l~~~~~~~~~~~~~~~~f~di 204 (214)
T TIGR03333 149 IRKLSEPNDYHIVIGDSVTDVEAAKQSDL--CFA-RDYLLNECEELGLNHAPFQDFYDV 204 (214)
T ss_pred HHHHhhcCCcEEEEeCCHHHHHHHHhCCe--eEe-hHHHHHHHHHcCCCccCcCCHHHH
Confidence 88888888999999999999999999997 333 3211111122 2244556676666
|
Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX. |
| >COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-12 Score=136.18 Aligned_cols=175 Identities=20% Similarity=0.177 Sum_probs=128.4
Q ss_pred CCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 001380 77 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLD 156 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1089)
++.++++|||||||++ ...+..+.+..|.......++...+....++...+......-...+.+..+++.+.+
T Consensus 3 ~~~~L~vFD~D~TLi~-----~~~~~~~~~~~g~~~~v~~~t~~~~~~~~~~~~~~~~~v~~l~g~~~~~v~~~~~~~-- 75 (212)
T COG0560 3 RMKKLAVFDLDGTLIN-----AELIDELARGAGVGEEVLAITERAMRGELDFEESLRLRVALLKGLPVEVLEEVREEF-- 75 (212)
T ss_pred CccceEEEecccchhh-----HHHHHHHHHHhCCHHHHHHHHHHHhcccccHHHHHHHHHHHhCCCCHHHHHHHHHhc--
Confidence 4568999999999999 346677777777776666666555555554444443322211113333333333332
Q ss_pred HhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCC-------c---cCCCCCHH
Q 001380 157 KYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADA-------F---ENLKPAPD 226 (1089)
Q Consensus 157 ~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~-------~---~~~KP~~~ 226 (1089)
..++||+.++++.++++|.+++|+|++....++.+.+++|++ ..+...+..++ . -..+-|..
T Consensus 76 -------~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d-~~~an~l~~~dG~ltG~v~g~~~~~~~K~~ 147 (212)
T COG0560 76 -------LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGID-YVVANELEIDDGKLTGRVVGPICDGEGKAK 147 (212)
T ss_pred -------CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCc-hheeeEEEEeCCEEeceeeeeecCcchHHH
Confidence 278999999999999999999999999999999999999997 66654444433 1 12456788
Q ss_pred HHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcC
Q 001380 227 IFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTT 267 (1089)
Q Consensus 227 ~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~ 267 (1089)
.+.+.++++|+++++++++||+.||+.+-+.+|.. +.++.
T Consensus 148 ~l~~~~~~~g~~~~~~~a~gDs~nDlpml~~ag~~-ia~n~ 187 (212)
T COG0560 148 ALRELAAELGIPLEETVAYGDSANDLPMLEAAGLP-IAVNP 187 (212)
T ss_pred HHHHHHHHcCCCHHHeEEEcCchhhHHHHHhCCCC-eEeCc
Confidence 89999999999999999999999999999999965 44544
|
|
| >KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.4e-12 Score=147.33 Aligned_cols=205 Identities=18% Similarity=0.225 Sum_probs=161.9
Q ss_pred CCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCC
Q 001380 599 PLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTEN 678 (1089)
Q Consensus 599 ~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n 678 (1089)
+-.-|.||++|=.+..+|++|...++|.+-.++|.--++|-.. .+.+|.|||+|..++.+|++|..+
T Consensus 1023 p~~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~-------------~L~SPEGiAVDh~~Rn~ywtDS~l 1089 (1289)
T KOG1214|consen 1023 PGSIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNS-------------GLISPEGIAVDHIRRNMYWTDSVL 1089 (1289)
T ss_pred ccceeeeeecccccceEEEeecCCCccccccccCCCCceeecc-------------cCCCccceeeeeccceeeeecccc
Confidence 3345667788877889999999999999988887655555443 267999999999988899999999
Q ss_pred CEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC--CcEEEEEECCCCeEEEEeCC
Q 001380 679 HALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG--QHQIWEHSTVDGVTRAFSGD 756 (1089)
Q Consensus 679 ~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~--~~~I~~~~~~~g~~~~~~g~ 756 (1089)
.+|-+-.+++.+-+.+..++ |-+|.+|++|+-++.||++|+. |-.|-..+.++..-+.+.
T Consensus 1090 D~IevA~LdG~~rkvLf~td----------------LVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRili-- 1151 (1289)
T KOG1214|consen 1090 DKIEVALLDGSERKVLFYTD----------------LVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILI-- 1151 (1289)
T ss_pred chhheeecCCceeeEEEeec----------------ccCcceEEeecccCceeeccccccCCcceeeccCCccceEEe--
Confidence 99999888888888887444 7799999999999999999986 345655554443333333
Q ss_pred CccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccc
Q 001380 757 GYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLL 836 (1089)
Q Consensus 757 g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l 836 (1089)
+.-+..|+||.++|..+.|-++|.+++++..+.+++.+.+++. ..|
T Consensus 1152 ------------n~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~gRR~i~----------------------~~L 1197 (1289)
T KOG1214|consen 1152 ------------NTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTGRRVIQ----------------------NNL 1197 (1289)
T ss_pred ------------ecccCCCCCceeCcccceeeEEecCCcceeEecCCCCcchhhh----------------------hcc
Confidence 2345579999999998899999999999999998865444332 138
Q ss_pred cCceEEEEccCCcEEEEeCCCCEEEEEeCCCCe
Q 001380 837 QHPLGVYCAKNGQIYVADSYNHKIKKLDPASNR 869 (1089)
Q Consensus 837 ~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~ 869 (1089)
|.|.+|+-+.+ ++|++|+..++|..++..++.
T Consensus 1198 qYPF~itsy~~-~fY~TDWk~n~vvsv~~~~~~ 1229 (1289)
T KOG1214|consen 1198 QYPFSITSYAD-HFYHTDWKRNGVVSVNKHSGQ 1229 (1289)
T ss_pred cCceeeeeccc-cceeeccccCceEEeeccccc
Confidence 99999998755 599999999999999876543
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.5e-10 Score=123.23 Aligned_cols=235 Identities=19% Similarity=0.241 Sum_probs=164.6
Q ss_pred CeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeE
Q 001380 613 NRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTV 691 (1089)
Q Consensus 613 g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v 691 (1089)
+++|++....+.|.++|.+ ++.+..+... ..|.+++++++|+.+|++...++.|+.+|..++.+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~---------------~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~ 65 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVG---------------QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV 65 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECC---------------CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcE
Confidence 4689999999999999986 6666665432 14688999999998999988889999999987765
Q ss_pred EEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCcc
Q 001380 692 RTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTS 771 (1089)
Q Consensus 692 ~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~ 771 (1089)
......+ ..+..++++++++.+|++....+.|+.||..++........
T Consensus 66 ~~~~~~~-----------------~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~--------------- 113 (300)
T TIGR03866 66 IGTLPSG-----------------PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV--------------- 113 (300)
T ss_pred EEeccCC-----------------CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC---------------
Confidence 4432111 13567899999989999987788999999887643322110
Q ss_pred ccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-E
Q 001380 772 FAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-I 850 (1089)
Q Consensus 772 ~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-l 850 (1089)
-..|.+++++++|+.++++......+..++..++........ -..|.+++++++|. +
T Consensus 114 ~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~----------------------~~~~~~~~~s~dg~~l 171 (300)
T TIGR03866 114 GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV----------------------DQRPRFAEFTADGKEL 171 (300)
T ss_pred CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc----------------------CCCccEEEECCCCCEE
Confidence 124789999999977777766556677778765433211000 12467789999986 6
Q ss_pred EEEeCCCCEEEEEeCCCCeE-EEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEEEECCCCEEEEEeCCCC
Q 001380 851 YVADSYNHKIKKLDPASNRV-STLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 851 yVaD~~n~~I~~~d~~~~~v-~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~~n~~I~~~~~~~~ 923 (1089)
|++....++|+.+|..++.+ .++... ..+. ...-..|.+++++++|+ +|++...+++|.++++.+.
T Consensus 172 ~~~~~~~~~v~i~d~~~~~~~~~~~~~-~~~~------~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~ 239 (300)
T TIGR03866 172 WVSSEIGGTVSVIDVATRKVIKKITFE-IPGV------HPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY 239 (300)
T ss_pred EEEcCCCCEEEEEEcCcceeeeeeeec-cccc------ccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 67766678999999987754 333211 1000 00123588999999886 6888877889999999765
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.5e-12 Score=131.83 Aligned_cols=181 Identities=13% Similarity=0.122 Sum_probs=114.7
Q ss_pred eEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhc
Q 001380 80 SAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDKYA 159 (1089)
Q Consensus 80 k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (1089)
.+++||+||||++. .|.+...+.|+.. ..++..-......+...............+.. .+.+ +.
T Consensus 2 ~la~FDlD~TLi~~------~w~~~~~~~g~~~--~~~~~~~~~~~~~~~~~r~~ll~~~g~~~~~i----~~~~-~~-- 66 (203)
T TIGR02137 2 EIACLDLEGVLVPE------IWIAFAEKTGIDA--LKATTRDIPDYDVLMKQRLRILDEHGLKLGDI----QEVI-AT-- 66 (203)
T ss_pred eEEEEeCCcccHHH------HHHHHHHHcCCcH--HHHHhcCCcCHHHHHHHHHHHHHHCCCCHHHH----HHHH-Hh--
Confidence 56999999999964 4778888888532 22222212223333333222221112122222 1111 11
Q ss_pred CCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccE--------EEEcCCccCCCCCHHHHHHH
Q 001380 160 KPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDA--------IVSADAFENLKPAPDIFLSA 231 (1089)
Q Consensus 160 ~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~--------i~~~~~~~~~KP~~~~~~~~ 231 (1089)
..++||+.++|+.|+++ ++++|+|++....++.+++++|++ .+|.. .+++... ..++.+..+...
T Consensus 67 ----i~l~pga~ell~~lk~~-~~~~IVS~~~~~~~~~il~~lgi~-~~~an~l~~~~~g~~tG~~~-~~~~~K~~~l~~ 139 (203)
T TIGR02137 67 ----LKPLEGAVEFVDWLRER-FQVVILSDTFYEFSQPLMRQLGFP-TLLCHKLEIDDSDRVVGYQL-RQKDPKRQSVIA 139 (203)
T ss_pred ----CCCCccHHHHHHHHHhC-CeEEEEeCChHHHHHHHHHHcCCc-hhhceeeEEecCCeeECeee-cCcchHHHHHHH
Confidence 16899999999999998 499999999999999999999997 77752 2222222 345556655555
Q ss_pred HHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcE-EecCcccC
Q 001380 232 SKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSL-IRKEIGSV 289 (1089)
Q Consensus 232 l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~-vi~dl~el 289 (1089)
+++.+. ++++|||+.||+.+++.+|+..+... .+.+.+..+++ ++.+.++|
T Consensus 140 l~~~~~---~~v~vGDs~nDl~ml~~Ag~~ia~~a----k~~~~~~~~~~~~~~~~~~~ 191 (203)
T TIGR02137 140 FKSLYY---RVIAAGDSYNDTTMLSEAHAGILFHA----PENVIREFPQFPAVHTYEDL 191 (203)
T ss_pred HHhhCC---CEEEEeCCHHHHHHHHhCCCCEEecC----CHHHHHhCCCCCcccCHHHH
Confidence 666664 79999999999999999998766652 33344433443 44555554
|
This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338). |
| >PRK11009 aphA acid phosphatase/phosphotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.7e-12 Score=137.41 Aligned_cols=96 Identities=18% Similarity=0.082 Sum_probs=81.6
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCC----hHhHHHHHHHCCC--CCCCccEEEEcCCccCCCCCHHHHHHHHHHcCC
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSAD----RIKVDANLAAAGL--PVSMFDAIVSADAFENLKPAPDIFLSASKILNV 237 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~----~~~~~~~l~~~gl--~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv 237 (1089)
..++||+.++|+.|+++|++++++||+. ...++.+++.+|+ . .+|+.+++++.. .||++.. .++++++
T Consensus 113 a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~-~~f~vil~gd~~--~K~~K~~---~l~~~~i 186 (237)
T PRK11009 113 SIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPAD-NMNPVIFAGDKP--GQYTKTQ---WLKKKNI 186 (237)
T ss_pred CcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcc-cceeEEEcCCCC--CCCCHHH---HHHhcCC
Confidence 4789999999999999999999999963 4466777777999 6 788999888753 6777653 5567776
Q ss_pred CCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC
Q 001380 238 PTSECIVIEDALAGVQAAKAAQMRCIAVTTTL 269 (1089)
Q Consensus 238 ~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~ 269 (1089)
++||||+.+|+++|++||+++|.|.+|.
T Consensus 187 ----~I~IGDs~~Di~aA~~AGi~~I~v~~G~ 214 (237)
T PRK11009 187 ----RIFYGDSDNDITAAREAGARGIRILRAA 214 (237)
T ss_pred ----eEEEcCCHHHHHHHHHcCCcEEEEecCC
Confidence 8999999999999999999999999986
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.7e-11 Score=132.61 Aligned_cols=210 Identities=18% Similarity=0.276 Sum_probs=146.8
Q ss_pred cceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCc
Q 001380 659 PQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQH 738 (1089)
Q Consensus 659 P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~ 738 (1089)
..|..++++++.||++|..+++|+++++.+|..+.+...+. .+.++.++..+ .|+.+..
T Consensus 27 gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~-----------------~~~~~~~d~~g-~Lv~~~~--- 85 (307)
T COG3386 27 GEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGG-----------------FSSGALIDAGG-RLIACEH--- 85 (307)
T ss_pred ccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCC-----------------cccceeecCCC-eEEEEcc---
Confidence 46777888888899999999999999999888888864332 35567777655 7777764
Q ss_pred EEEEEECCCCeE-EEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCC-----------CCeEEEEEcCCCC
Q 001380 739 QIWEHSTVDGVT-RAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSE-----------SSSIRALNLKTGG 806 (1089)
Q Consensus 739 ~I~~~~~~~g~~-~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~-----------~~~I~~~~~~~~~ 806 (1089)
.++.++.+.+.. +.+..... ......|+.+.++++| .+|+.+.. .++|+++++.++.
T Consensus 86 g~~~~~~~~~~~~t~~~~~~~----------~~~~~r~ND~~v~pdG-~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~ 154 (307)
T COG3386 86 GVRLLDPDTGGKITLLAEPED----------GLPLNRPNDGVVDPDG-RIWFGDMGYFDLGKSEERPTGSLYRVDPDGGV 154 (307)
T ss_pred ccEEEeccCCceeEEeccccC----------CCCcCCCCceeEcCCC-CEEEeCCCccccCccccCCcceEEEEcCCCCE
Confidence 445555554444 55543211 1345689999999998 99999987 2479999986544
Q ss_pred eEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCC-cEEEEeCCCCEEEEEeCCC--CeEEEEeccCCCCCCC
Q 001380 807 SRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNG-QIYVADSYNHKIKKLDPAS--NRVSTLAGIGKAGFKD 883 (1089)
Q Consensus 807 ~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G-~lyVaD~~n~~I~~~d~~~--~~v~t~~g~g~~g~~~ 883 (1089)
++.+.+. +..|.||+++||| .+|++|+..++|.+++.+. +.+.. ...+..
T Consensus 155 ~~l~~~~----------------------~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~-----~~~~~~ 207 (307)
T COG3386 155 VRLLDDD----------------------LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGG-----RRGFVD 207 (307)
T ss_pred EEeecCc----------------------EEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCC-----cceEEE
Confidence 4444321 5679999999999 7999999999999997642 11100 000000
Q ss_pred CcccccccCCCceEEEccCCcEEEEECCC-CEEEEEeCCCCCceEEEEee
Q 001380 884 GAALAAQLSEPAGIIEAQNGNLFIADTNN-NIIRYLDLNKEEPELQTLEL 932 (1089)
Q Consensus 884 g~~~~~~l~~P~gi~vd~~G~lyVad~~n-~~I~~~~~~~~~~~~~~l~~ 932 (1089)
. ...=..|.|+|+|.+|+||++-..+ .+|.+++++++ .+..+.+
T Consensus 208 ~---~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~--l~~~i~l 252 (307)
T COG3386 208 F---DEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGK--LLGEIKL 252 (307)
T ss_pred c---cCCCCCCCceEEeCCCCEEEecccCCceEEEECCCCc--EEEEEEC
Confidence 0 0011459999999999999654444 59999999976 6666664
|
|
| >cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44 | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.7e-13 Score=122.77 Aligned_cols=86 Identities=13% Similarity=0.208 Sum_probs=71.9
Q ss_pred cccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHH
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLW 528 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~ 528 (1089)
++++||++||+|||+||++|+.++|.|.++++++++ +.++.|.. + +....++
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~--~~~~~vd~-----~---------------------~~~~~l~ 65 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ--IRHLAIEE-----S---------------------SIKPSLL 65 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc--CceEEEEC-----C---------------------CCCHHHH
Confidence 578999999999999999999999999999999974 67777732 1 1345789
Q ss_pred HHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHH
Q 001380 529 RELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDL 564 (1089)
Q Consensus 529 ~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~ 564 (1089)
++|+|.++||+++++ +| .+.++.|..+.+.+.++
T Consensus 66 ~~~~V~~~PT~~lf~-~g-~~~~~~G~~~~~~l~~f 99 (100)
T cd02999 66 SRYGVVGFPTILLFN-ST-PRVRYNGTRTLDSLAAF 99 (100)
T ss_pred HhcCCeecCEEEEEc-CC-ceeEecCCCCHHHHHhh
Confidence 999999999999996 55 67789998888777665
|
CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. |
| >KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.8e-13 Score=138.94 Aligned_cols=211 Identities=17% Similarity=0.229 Sum_probs=129.7
Q ss_pred CCCCceEEEEecCCcccCCchHHHH--HHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHH--HHH
Q 001380 75 KWGKVSAVLFDMDGVLCNSEEPSRR--AAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAK--KRF 150 (1089)
Q Consensus 75 ~~~~~k~ViFD~DGTL~d~~~~~~~--a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 150 (1089)
.+..++.|+||+|||||.....+.- .+.+.++.+|..+ -..++....+.+++.+.+... |+.....++.. ...
T Consensus 18 ~l~~~DtfifDcDGVlW~g~~~ipGs~e~l~~L~~~gK~i--~fvTNNStksr~~y~kK~~~l-G~~~v~e~~i~ssa~~ 94 (306)
T KOG2882|consen 18 LLDSFDTFIFDCDGVLWLGEKPIPGSPEALNLLKSLGKQI--IFVTNNSTKSREQYMKKFAKL-GFNSVKEENIFSSAYA 94 (306)
T ss_pred HHhhcCEEEEcCCcceeecCCCCCChHHHHHHHHHcCCcE--EEEeCCCcchHHHHHHHHHHh-CccccCcccccChHHH
Confidence 4567899999999999987765443 3445566666432 234555666666666655443 32211111111 111
Q ss_pred HHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHh--HHHHHHHCCCCCCCccE-----------------
Q 001380 151 FEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIK--VDANLAAAGLPVSMFDA----------------- 211 (1089)
Q Consensus 151 ~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~--~~~~l~~~gl~~~~fd~----------------- 211 (1089)
...|..............|...+.+.|++.|+..+......... ........+++ .-+.+
T Consensus 95 ~a~ylk~~~~~~k~Vyvig~~gi~~eL~~aG~~~~g~~~~~~~~~~~~~~~~~~~~d-~~VgAVvvg~D~hfsy~KL~kA 173 (306)
T KOG2882|consen 95 IADYLKKRKPFGKKVYVIGEEGIREELDEAGFEYFGGGPDGKDTDGAKSFVLSIGLD-PDVGAVVVGYDEHFSYPKLMKA 173 (306)
T ss_pred HHHHHHHhCcCCCeEEEecchhhhHHHHHcCceeecCCCCcccccccccchhhcCCC-CCCCEEEEecccccCHHHHHHH
Confidence 12233222223234677888999999999987655444321111 11111112221 11111
Q ss_pred -----------EEEc-----------------------------CCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCCh-h
Q 001380 212 -----------IVSA-----------------------------DAFENLKPAPDIFLSASKILNVPTSECIVIEDAL-A 250 (1089)
Q Consensus 212 -----------i~~~-----------------------------~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~-~ 250 (1089)
+.+. +....+||++.|+..++++++++|++++||||++ +
T Consensus 174 ~~yLqnP~clflatn~D~~~p~~~~~~ipG~G~~v~av~~~t~R~P~v~GKP~~~m~~~l~~~~~i~psRt~mvGDRL~T 253 (306)
T KOG2882|consen 174 LNYLQNPGCLFLATNRDATTPPTPGVEIPGAGSFVAAVKFATGRQPIVLGKPSTFMFEYLLEKFNIDPSRTCMVGDRLDT 253 (306)
T ss_pred HHHhCCCCcEEEeccCccccCCCCCeeccCCccHHHHHHHHhcCCCeecCCCCHHHHHHHHHHcCCCcceEEEEcccchh
Confidence 1111 1222489999999999999999999999999999 9
Q ss_pred hHHHHHHcCCeEEEEcCCC-CHHHHhhc------CCcEEecCcccC
Q 001380 251 GVQAAKAAQMRCIAVTTTL-SEERLKEA------SPSLIRKEIGSV 289 (1089)
Q Consensus 251 Di~aA~~aG~~~i~V~~g~-~~~~l~~~------~~d~vi~dl~el 289 (1089)
||..+++.|+.+++|.+|+ +.++.+.. .|||+++.+.++
T Consensus 254 DIlFG~~~G~~TLLvltGv~~led~~~~~~~~~~~PDyy~~~l~d~ 299 (306)
T KOG2882|consen 254 DILFGKNCGFKTLLVLSGVTTLEDILEAQGDNKMVPDYYADSLGDL 299 (306)
T ss_pred hhhHhhccCcceEEEecCcCcHHHHHhcccccCCCCchHHhhHHHH
Confidence 9999999999999999998 55555443 367776666555
|
|
| >cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-12 Score=121.35 Aligned_cols=87 Identities=21% Similarity=0.295 Sum_probs=68.8
Q ss_pred ccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 450 ~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
+.+||+|||+|||+||++|+.++|.|++++++++ ++.++.|+.+ ++. ...++++
T Consensus 12 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~--~v~~~~vd~d-----~~~-------------------~~~~l~~ 65 (103)
T cd02985 12 KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN--DVVFLLVNGD-----END-------------------STMELCR 65 (103)
T ss_pred HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--CCEEEEEECC-----CCh-------------------HHHHHHH
Confidence 3469999999999999999999999999999993 5788888541 110 0136888
Q ss_pred HhCCCceeEEEEECCCCcEEEEecCCCchhhHHHH
Q 001380 530 ELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDL 564 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~ 564 (1089)
+|+|.++||++++ ++|+++.++.|.. .+.+.+.
T Consensus 66 ~~~V~~~Pt~~~~-~~G~~v~~~~G~~-~~~l~~~ 98 (103)
T cd02985 66 REKIIEVPHFLFY-KDGEKIHEEEGIG-PDELIGD 98 (103)
T ss_pred HcCCCcCCEEEEE-eCCeEEEEEeCCC-HHHHHHH
Confidence 9999999998877 8999999999965 4444433
|
CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form. |
| >cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-12 Score=120.91 Aligned_cols=80 Identities=19% Similarity=0.160 Sum_probs=70.4
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+++|||+|||+||+||+.+.|.|.+++++|++. +.++-|.+ |...++++.|
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDv---------------------------D~~~~la~~~ 64 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDI---------------------------DEVPDFNKMY 64 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc-eEEEEEEC---------------------------CCCHHHHHHc
Confidence 4689999999999999999999999999999865 67777754 6678999999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhh
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKD 560 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~ 560 (1089)
+|.++||++++ ++|+.+.+..|..+..+
T Consensus 65 ~V~~iPTf~~f-k~G~~v~~~~G~~~~~~ 92 (114)
T cd02954 65 ELYDPPTVMFF-FRNKHMKIDLGTGNNNK 92 (114)
T ss_pred CCCCCCEEEEE-ECCEEEEEEcCCCCCce
Confidence 99999999999 89999999988765443
|
It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing. |
| >cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.8e-12 Score=122.23 Aligned_cols=89 Identities=18% Similarity=0.296 Sum_probs=77.9
Q ss_pred cCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHH
Q 001380 451 LKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRE 530 (1089)
Q Consensus 451 ~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~ 530 (1089)
.+|+++||+||++||++|+.+.|.+.++.+++++.++.+..|.+ |.+..++++
T Consensus 22 ~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~---------------------------d~~~~l~~~ 74 (111)
T cd02963 22 SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNA---------------------------GHERRLARK 74 (111)
T ss_pred cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEec---------------------------cccHHHHHH
Confidence 47899999999999999999999999999999865688888854 455689999
Q ss_pred hCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHH
Q 001380 531 LGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEA 567 (1089)
Q Consensus 531 ~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~ 567 (1089)
|+|.++|+++++ ++|+++....|..+.+.+.++|++
T Consensus 75 ~~V~~~Pt~~i~-~~g~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 75 LGAHSVPAIVGI-INGQVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred cCCccCCEEEEE-ECCEEEEEecCCCCHHHHHHHHhc
Confidence 999999999999 699999999998888888887764
|
DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network. |
| >TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.8e-12 Score=125.29 Aligned_cols=88 Identities=16% Similarity=0.172 Sum_probs=79.3
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCC-ChHhHHHHHHHCC-------CCCCCccEEEEcCCccCCCCCHHHHHHHHHHcC
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSA-DRIKVDANLAAAG-------LPVSMFDAIVSADAFENLKPAPDIFLSASKILN 236 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~-~~~~~~~~l~~~g-------l~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lg 236 (1089)
.++||+.++|+.|+++|++++|+||+ ....+...++..+ +. .+|+.++++++ +|+|++|.++++++|
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~-~~f~~~~~~~~----~pkp~~~~~a~~~lg 103 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLA-EYFDPLTIGYW----LPKSPRLVEIALKLN 103 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhH-hhhhhhhhcCC----CcHHHHHHHHHHHhc
Confidence 47899999999999999999999999 7888888899888 75 88999888863 589999999999999
Q ss_pred --CCCCcEEEEcCChhhHHHHHH
Q 001380 237 --VPTSECIVIEDALAGVQAAKA 257 (1089)
Q Consensus 237 --v~p~~~v~VGD~~~Di~aA~~ 257 (1089)
+.|++|+||||+..|+...++
T Consensus 104 ~~~~p~~~l~igDs~~n~~~~~~ 126 (128)
T TIGR01681 104 GVLKPKSILFVDDRPDNNEEVDY 126 (128)
T ss_pred CCCCcceEEEECCCHhHHHHHHh
Confidence 999999999999999887654
|
No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC. |
| >cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.1e-12 Score=117.45 Aligned_cols=85 Identities=25% Similarity=0.458 Sum_probs=75.3
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
+|+++||+||++||++|+.+.|.++++++++++. +.++.|.+ |....++++|
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~vd~---------------------------~~~~~l~~~~ 62 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ-FVLAKVNC---------------------------DAQPQIAQQF 62 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc-EEEEEEec---------------------------cCCHHHHHHc
Confidence 5889999999999999999999999999999764 88888854 4566899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLV 565 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l 565 (1089)
+|.++|++++++ +|+++.++.|..+.+.+.++|
T Consensus 63 ~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 63 GVQALPTVYLFA-AGQPVDGFQGAQPEEQLRQML 95 (96)
T ss_pred CCCCCCEEEEEe-CCEEeeeecCCCCHHHHHHHh
Confidence 999999999996 999999999988888887765
|
Its gene has been sequenced from several gammaproteobacteria and actinobacteria. |
| >cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.1e-12 Score=117.83 Aligned_cols=86 Identities=19% Similarity=0.323 Sum_probs=72.1
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+++++|+|||+||++|+.+.|.|+++++++++..+.++.+.. | +.+++++|
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~---------------------------d-~~~~~~~~ 67 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEA---------------------------D-TIDTLKRY 67 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeC---------------------------C-CHHHHHHc
Confidence 5899999999999999999999999999999865677777743 3 45688999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEA 567 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~ 567 (1089)
+|.++|+++++ ++|+.+.+..|. ..+.+.+.|++
T Consensus 68 ~v~~~Pt~~~~-~~g~~~~~~~G~-~~~~~~~~i~~ 101 (102)
T cd02948 68 RGKCEPTFLFY-KNGELVAVIRGA-NAPLLNKTITE 101 (102)
T ss_pred CCCcCcEEEEE-ECCEEEEEEecC-ChHHHHHHHhh
Confidence 99999998888 799999999885 66666666653
|
Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which |
| >TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.4e-12 Score=128.86 Aligned_cols=110 Identities=14% Similarity=0.191 Sum_probs=90.3
Q ss_pred HHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhH
Q 001380 173 LINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGV 252 (1089)
Q Consensus 173 lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di 252 (1089)
+|++|+++|++++|+||.....+...++++|+. .+|+. .||+++++.++++++|+++++|+||||+.+|+
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~-~~~~~---------~~~k~~~~~~~~~~~~~~~~~~~~vGDs~~D~ 105 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTLGIT-HLYQG---------QSNKLIAFSDILEKLALAPENVAYIGDDLIDW 105 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCC-EEEec---------ccchHHHHHHHHHHcCCCHHHEEEECCCHHHH
Confidence 688899999999999999999999999999996 66542 37899999999999999999999999999999
Q ss_pred HHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCC-HHHHHh
Q 001380 253 QAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVS-LNDILT 296 (1089)
Q Consensus 253 ~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~-i~~ll~ 296 (1089)
.+++++|+. +.+.... +.+ ...+++++.+..+-. +..+++
T Consensus 106 ~~~~~ag~~-~~v~~~~--~~~-~~~a~~i~~~~~~~g~~~~~~~ 146 (154)
T TIGR01670 106 PVMEKVGLS-VAVADAH--PLL-IPRADYVTRIAGGRGAVREVCE 146 (154)
T ss_pred HHHHHCCCe-EecCCcC--HHH-HHhCCEEecCCCCCcHHHHHHH
Confidence 999999996 6666542 333 446888887775432 344443
|
The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved. |
| >TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.8e-12 Score=128.21 Aligned_cols=102 Identities=14% Similarity=0.180 Sum_probs=85.0
Q ss_pred HHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhH
Q 001380 173 LINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGV 252 (1089)
Q Consensus 173 lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di 252 (1089)
.+..|+++|++++|+||.....++..++.+++. .+|+. .||+|+.|+.+++++++++++|++|||+.+|+
T Consensus 42 ~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~-~~f~~---------~kpkp~~~~~~~~~l~~~~~ev~~iGD~~nDi 111 (169)
T TIGR02726 42 GVIVLQLCGIDVAIITSKKSGAVRHRAEELKIK-RFHEG---------IKKKTEPYAQMLEEMNISDAEVCYVGDDLVDL 111 (169)
T ss_pred HHHHHHHCCCEEEEEECCCcHHHHHHHHHCCCc-EEEec---------CCCCHHHHHHHHHHcCcCHHHEEEECCCHHHH
Confidence 456688999999999999999999999999996 77763 28999999999999999999999999999999
Q ss_pred HHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCccc
Q 001380 253 QAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGS 288 (1089)
Q Consensus 253 ~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~e 288 (1089)
.+++.+|+..+.- ...+.++. .+++|..+-.+
T Consensus 112 ~~~~~ag~~~am~---nA~~~lk~-~A~~I~~~~~~ 143 (169)
T TIGR02726 112 SMMKRVGLAVAVG---DAVADVKE-AAAYVTTARGG 143 (169)
T ss_pred HHHHHCCCeEECc---CchHHHHH-hCCEEcCCCCC
Confidence 9999999664443 34555554 57888764433
|
Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases. |
| >TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.2e-12 Score=129.77 Aligned_cols=93 Identities=18% Similarity=0.204 Sum_probs=78.1
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCC------------ccCCCCCHHHHHHHH
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADA------------FENLKPAPDIFLSAS 232 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~------------~~~~KP~~~~~~~~l 232 (1089)
.++||+.++++.++++|++++|+|++....++.+++++|+. .++...+..++ ...+..|...+++.+
T Consensus 73 ~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~-~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~~~~ 151 (177)
T TIGR01488 73 ALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGID-DVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLKELL 151 (177)
T ss_pred CcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCc-hheeeeEEECCCCEEeCccCCcccCCcchHHHHHHHHH
Confidence 57899999999999999999999999999999999999996 66654433321 123455678888989
Q ss_pred HHcCCCCCcEEEEcCChhhHHHHHHc
Q 001380 233 KILNVPTSECIVIEDALAGVQAAKAA 258 (1089)
Q Consensus 233 ~~lgv~p~~~v~VGD~~~Di~aA~~a 258 (1089)
++++++++++++|||+.+|+.+++.+
T Consensus 152 ~~~~~~~~~~~~iGDs~~D~~~~~~a 177 (177)
T TIGR01488 152 EESKITLKKIIAVGDSVNDLPMLKLA 177 (177)
T ss_pred HHhCCCHHHEEEEeCCHHHHHHHhcC
Confidence 99999999999999999999998764
|
Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences. |
| >PHA02530 pseT polynucleotide kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.8e-12 Score=143.15 Aligned_cols=103 Identities=15% Similarity=0.150 Sum_probs=96.5
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCC-CccEEEEcC-------CccCCCCCHHHHHHHHHHcC
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVS-MFDAIVSAD-------AFENLKPAPDIFLSASKILN 236 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~-~fd~i~~~~-------~~~~~KP~~~~~~~~l~~lg 236 (1089)
.++||+.++|+.|+++|++++|+||......+..++++++. . +|+.+++.+ +....||+|+++..++++++
T Consensus 187 ~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~-~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~~ 265 (300)
T PHA02530 187 KPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQT-DIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEKI 265 (300)
T ss_pred CCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHc-CCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999996 5 899999988 45578999999999999998
Q ss_pred C-CCCcEEEEcCChhhHHHHHHcCCeEEEEcCC
Q 001380 237 V-PTSECIVIEDALAGVQAAKAAQMRCIAVTTT 268 (1089)
Q Consensus 237 v-~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g 268 (1089)
. .+++|+||||+.+|+++|+++|+.+++|.+|
T Consensus 266 ~~~~~~~~~vgD~~~d~~~a~~~Gi~~i~v~~g 298 (300)
T PHA02530 266 APKYDVLLAVDDRDQVVDMWRRIGLECWQVAPG 298 (300)
T ss_pred ccCceEEEEEcCcHHHHHHHHHhCCeEEEecCC
Confidence 8 6799999999999999999999999999887
|
|
| >KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.9e-11 Score=136.89 Aligned_cols=230 Identities=15% Similarity=0.221 Sum_probs=179.3
Q ss_pred CCeEEEEeCCCCEEEEEeCCCCEEEE------EecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEE
Q 001380 612 NNRLFISDSNHNRIVVTDLDGNFIVQ------IGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREID 685 (1089)
Q Consensus 612 ~g~L~vsd~~~~~I~~~~~~g~~~~~------i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d 685 (1089)
+..|+++.. ..|..+.++|..+.. +-.+ -.-|.||++|-..+.+||+|...+.|++-.
T Consensus 990 gt~LL~aqg--~~I~~lplng~~~~K~~ak~~l~~p--------------~~IiVGidfDC~e~mvyWtDv~g~SI~ras 1053 (1289)
T KOG1214|consen 990 GTFLLYAQG--QQIGYLPLNGTRLQKDAAKTLLSLP--------------GSIIVGIDFDCRERMVYWTDVAGRSISRAS 1053 (1289)
T ss_pred cceEEEecc--ceEEEeecCcchhchhhhhceEecc--------------cceeeeeecccccceEEEeecCCCcccccc
Confidence 456666664 567777666653321 1111 024789999988888999999999999999
Q ss_pred CCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCC
Q 001380 686 FVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGS 765 (1089)
Q Consensus 686 ~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~ 765 (1089)
+.++.-+++...+ |.+|-|||+|..+.++|++|..+.+|-.-.+++...+.+..
T Consensus 1054 L~G~Ep~ti~n~~----------------L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~---------- 1107 (1289)
T KOG1214|consen 1054 LEGAEPETIVNSG----------------LISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFY---------- 1107 (1289)
T ss_pred ccCCCCceeeccc----------------CCCccceeeeeccceeeeeccccchhheeecCCceeeEEEe----------
Confidence 9998888887433 78999999999999999999999998776666655555542
Q ss_pred CCCCccccCCceEEEcCCCCEEEEEeCC--CCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEE
Q 001380 766 SSLNTSFAQPSGISLSPDFMEIYVADSE--SSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVY 843 (1089)
Q Consensus 766 ~~~~~~~~~P~glav~~~g~~lyvad~~--~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva 843 (1089)
..+.+|.+|++|+-+++||++|+. +-.|-+.++++...+++...+ +.-|.|++
T Consensus 1108 ----tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin~D---------------------igLPNGLt 1162 (1289)
T KOG1214|consen 1108 ----TDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILINTD---------------------IGLPNGLT 1162 (1289)
T ss_pred ----ecccCcceEEeecccCceeeccccccCCcceeeccCCccceEEeecc---------------------cCCCCCce
Confidence 457799999999998899999975 557888888877666665433 45699999
Q ss_pred EccCC-cEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCC
Q 001380 844 CAKNG-QIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNK 922 (1089)
Q Consensus 844 ~~~~G-~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~ 922 (1089)
+|+.. .|-|+|.+++|+.-+.+++---.++.. .|..|-+|.-+.+ ++|.+|+..++|..+++.+
T Consensus 1163 fdpfs~~LCWvDAGt~rleC~~p~g~gRR~i~~--------------~LqYPF~itsy~~-~fY~TDWk~n~vvsv~~~~ 1227 (1289)
T KOG1214|consen 1163 FDPFSKLLCWVDAGTKRLECTLPDGTGRRVIQN--------------NLQYPFSITSYAD-HFYHTDWKRNGVVSVNKHS 1227 (1289)
T ss_pred eCcccceeeEEecCCcceeEecCCCCcchhhhh--------------cccCceeeeeccc-cceeeccccCceEEeeccc
Confidence 99976 588999999999988886543333321 5889999998865 5999999999999999887
Q ss_pred C
Q 001380 923 E 923 (1089)
Q Consensus 923 ~ 923 (1089)
+
T Consensus 1228 ~ 1228 (1289)
T KOG1214|consen 1228 G 1228 (1289)
T ss_pred c
Confidence 6
|
|
| >PHA02278 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.8e-12 Score=115.47 Aligned_cols=88 Identities=15% Similarity=0.179 Sum_probs=69.1
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
+++++||+|||+||+||+.+.|.+.++++++... +.++-|.+++.. + | ..++++.|
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~-~~~~~vdvd~~~--------------------~--d-~~~l~~~~ 68 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIK-KPILTLNLDAED--------------------V--D-REKAVKLF 68 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCC-ceEEEEECCccc--------------------c--c-cHHHHHHC
Confidence 5789999999999999999999999998875432 445555431000 0 1 25799999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDL 564 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~ 564 (1089)
+|.++||++++ ++|+.+.+..|....+.+.++
T Consensus 69 ~I~~iPT~i~f-k~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 69 DIMSTPVLIGY-KDGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred CCccccEEEEE-ECCEEEEEEeCCCCHHHHHhh
Confidence 99999999999 799999999998877776554
|
|
| >PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase) | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.1e-12 Score=137.73 Aligned_cols=90 Identities=33% Similarity=0.407 Sum_probs=80.6
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEE
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECI 243 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v 243 (1089)
.+++|++.++|+.|+++|++++++|+.+...+..+.+.+|+. +.++.++.. +||.+.+|.++++++++++++|+
T Consensus 126 d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~----~~~v~a~~~--~kP~~k~~~~~i~~l~~~~~~v~ 199 (215)
T PF00702_consen 126 DPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIF----DSIVFARVI--GKPEPKIFLRIIKELQVKPGEVA 199 (215)
T ss_dssp EEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSC----SEEEEESHE--TTTHHHHHHHHHHHHTCTGGGEE
T ss_pred CcchhhhhhhhhhhhccCcceeeeeccccccccccccccccc----ccccccccc--ccccchhHHHHHHHHhcCCCEEE
Confidence 367899999999999999999999999999999999999994 344444322 79999999999999999999999
Q ss_pred EEcCChhhHHHHHHcC
Q 001380 244 VIEDALAGVQAAKAAQ 259 (1089)
Q Consensus 244 ~VGD~~~Di~aA~~aG 259 (1089)
||||+.||+.|+++||
T Consensus 200 ~vGDg~nD~~al~~Ag 215 (215)
T PF00702_consen 200 MVGDGVNDAPALKAAG 215 (215)
T ss_dssp EEESSGGHHHHHHHSS
T ss_pred EEccCHHHHHHHHhCc
Confidence 9999999999999987
|
This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J .... |
| >cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation | Back alignment and domain information |
|---|
Probab=99.30 E-value=1e-11 Score=120.06 Aligned_cols=105 Identities=23% Similarity=0.244 Sum_probs=81.7
Q ss_pred CC-CEEEEEEecCCCcchhhhhhhHH---HHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhH
Q 001380 452 KG-KVVVLDFWTYCCINCMHVLPDLE---FLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNL 527 (1089)
Q Consensus 452 ~g-k~vll~Fwa~wC~~C~~~~p~l~---~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l 527 (1089)
.| |++||+||++||++|+.+.|.+. ++.+.+++ ++.++.|+.+ ++.. ... |........++
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d-----~~~~-~~~--------~~~~~~~~~~l 76 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINID-----GDKE-VTD--------FDGEALSEKEL 76 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEcc-----CCce-eec--------cCCCCccHHHH
Confidence 57 89999999999999999998875 56666654 5888888652 1111 111 11112346789
Q ss_pred HHHhCCCceeEEEEECCC-CcEEEEecCCCchhhHHHHHHHHHHH
Q 001380 528 WRELGVNSWPTFAVVGPN-GKLLAQLAGEGHRKDLDDLVEAALLF 571 (1089)
Q Consensus 528 ~~~~~v~~~Pt~~lid~~-G~i~~~~~G~~~~~~l~~~l~~~l~~ 571 (1089)
+++|+|.++|+++++|++ |+++.++.|....+.+.++|+.++++
T Consensus 77 ~~~~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 77 ARKYRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred HHHcCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999 89999999999999999999888765
|
Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation. |
| >PRK09381 trxA thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-11 Score=115.97 Aligned_cols=89 Identities=24% Similarity=0.485 Sum_probs=77.6
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+++++|+||++||++|+.+.|.|+++++++.+. +.++.+++ |....+++.|
T Consensus 20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~-~~~~~vd~---------------------------~~~~~~~~~~ 71 (109)
T PRK09381 20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNI---------------------------DQNPGTAPKY 71 (109)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC-cEEEEEEC---------------------------CCChhHHHhC
Confidence 4789999999999999999999999999999864 88888854 3455688899
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
+|.++|+++++ ++|+++.++.|....+.+..+|+..+
T Consensus 72 ~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 72 GIRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred CCCcCCEEEEE-eCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 99999999999 79999999999988888888887654
|
|
| >TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490 | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.9e-11 Score=126.72 Aligned_cols=98 Identities=12% Similarity=0.131 Sum_probs=82.8
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccE-EEEcCC----------ccCCCCCHHHHHHHHH
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDA-IVSADA----------FENLKPAPDIFLSASK 233 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~-i~~~~~----------~~~~KP~~~~~~~~l~ 233 (1089)
.++||+.++++.++++|++++|+|++....++.+++++|++ .+|.. +...++ ...+++|...+++.++
T Consensus 87 ~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~-~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~~ 165 (202)
T TIGR01490 87 ILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGID-NAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAELLA 165 (202)
T ss_pred hccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCc-ceEecceEEcCCCEEeCCccCCCCCChHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999996 66654 222111 1235677788999999
Q ss_pred HcCCCCCcEEEEcCChhhHHHHHHcCCeEE
Q 001380 234 ILNVPTSECIVIEDALAGVQAAKAAQMRCI 263 (1089)
Q Consensus 234 ~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i 263 (1089)
+.++++++|++|||+.+|+.+++.+|..++
T Consensus 166 ~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~ 195 (202)
T TIGR01490 166 EEQIDLKDSYAYGDSISDLPLLSLVGHPYV 195 (202)
T ss_pred HcCCCHHHcEeeeCCcccHHHHHhCCCcEE
Confidence 999999999999999999999999996654
|
A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog. |
| >PLN00410 U5 snRNP protein, DIM1 family; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.7e-11 Score=116.58 Aligned_cols=104 Identities=16% Similarity=0.109 Sum_probs=84.0
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+|+|||+|||+||+||+.+.|.|.++++++++. +.|+-|.+ |...+++..|
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDV---------------------------De~~dla~~y 73 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF-AVIYLVDI---------------------------TEVPDFNTMY 73 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc-eEEEEEEC---------------------------CCCHHHHHHc
Confidence 5689999999999999999999999999999865 66777755 6778999999
Q ss_pred CCCceeEEE-EECCCCc-EEEEecC--------CCchhhHHHHHHHHHHHhcccccccCCCCC
Q 001380 532 GVNSWPTFA-VVGPNGK-LLAQLAG--------EGHRKDLDDLVEAALLFYGKKKLLDNTPLP 584 (1089)
Q Consensus 532 ~v~~~Pt~~-lid~~G~-i~~~~~G--------~~~~~~l~~~l~~~l~~~~~~~~l~~~~~~ 584 (1089)
+|++.|+++ ++ ++|+ .+.+..| ....+++.+.++.+++...+...|...|.+
T Consensus 74 ~I~~~~t~~~ff-k~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~~g~~~~~~~~~ 135 (142)
T PLN00410 74 ELYDPCTVMFFF-RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVISPKD 135 (142)
T ss_pred CccCCCcEEEEE-ECCeEEEEEecccccccccccCCHHHHHHHHHHHHHHHhcCCeEEECCCc
Confidence 999887777 56 8888 7888888 467788888888888776654444444443
|
|
| >PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-11 Score=127.60 Aligned_cols=98 Identities=14% Similarity=0.205 Sum_probs=83.0
Q ss_pred HHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhH
Q 001380 173 LINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGV 252 (1089)
Q Consensus 173 lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di 252 (1089)
.++.|+++|++++|+||.....++..++++|+. .+|+ ..+++++.+.++++++|+++++++||||+.+|+
T Consensus 56 ~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lgl~-~~f~---------g~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D~ 125 (183)
T PRK09484 56 GIRCLLTSGIEVAIITGRKSKLVEDRMTTLGIT-HLYQ---------GQSNKLIAFSDLLEKLAIAPEQVAYIGDDLIDW 125 (183)
T ss_pred HHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCc-eeec---------CCCcHHHHHHHHHHHhCCCHHHEEEECCCHHHH
Confidence 566688899999999999999999999999996 6654 136678999999999999999999999999999
Q ss_pred HHHHHcCCeEEEEcCCCCHHHHhhcCCcEEec
Q 001380 253 QAAKAAQMRCIAVTTTLSEERLKEASPSLIRK 284 (1089)
Q Consensus 253 ~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~ 284 (1089)
.+++++|+.+ .+. ....+....+++++.
T Consensus 126 ~~a~~aG~~~-~v~---~~~~~~~~~a~~v~~ 153 (183)
T PRK09484 126 PVMEKVGLSV-AVA---DAHPLLLPRADYVTR 153 (183)
T ss_pred HHHHHCCCeE-ecC---ChhHHHHHhCCEEec
Confidence 9999999984 353 344555567899987
|
|
| >COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.3e-11 Score=120.41 Aligned_cols=122 Identities=24% Similarity=0.309 Sum_probs=98.7
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcC---------------CChHhHHHHHHHCCCCCCCccEEEEcC-----CccCCCCC
Q 001380 165 IGFPGALELINQCKSKGLKVAVASS---------------ADRIKVDANLAAAGLPVSMFDAIVSAD-----AFENLKPA 224 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn---------------~~~~~~~~~l~~~gl~~~~fd~i~~~~-----~~~~~KP~ 224 (1089)
.+.||+.+++..|++.|++++|+|| .....+...++..|+. ||.|+.+- ...+.||+
T Consensus 31 ~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv~---id~i~~Cph~p~~~c~cRKP~ 107 (181)
T COG0241 31 QFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGVK---IDGILYCPHHPEDNCDCRKPK 107 (181)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCCc---cceEEECCCCCCCCCcccCCC
Confidence 6789999999999999999999999 1223356667777876 88877652 35679999
Q ss_pred HHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccC
Q 001380 225 PDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 225 ~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el 289 (1089)
+.|++.+++++++++++.+||||+.+|+++|.++|+..+.+.++.......+...+++..++.++
T Consensus 108 ~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (181)
T COG0241 108 PGMLLSALKEYNIDLSRSYVVGDRLTDLQAAENAGIKGVLVLTGIGVTTDGAGRAKWVFDSLAEF 172 (181)
T ss_pred hHHHHHHHHHhCCCccceEEecCcHHHHHHHHHCCCCceEEEcCcccccccccccccccccHHHH
Confidence 99999999999999999999999999999999999999999887533333333456666666665
|
|
| >TIGR02740 TraF-like TraF-like protein | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.6e-11 Score=133.66 Aligned_cols=107 Identities=20% Similarity=0.239 Sum_probs=84.6
Q ss_pred eeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecC
Q 001380 444 PLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDG 523 (1089)
Q Consensus 444 ~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~ 523 (1089)
...+ ++++||++||+||++||++|+.++|.|++++++|+ +.|++|+++. ... -.||.. +.
T Consensus 158 ~~~l-~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg---~~Vi~VsvD~---~~~------------~~fp~~-~~ 217 (271)
T TIGR02740 158 DRVM-KDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG---IEVLPVSVDG---GPL------------PGFPNA-RP 217 (271)
T ss_pred HHHH-HHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC---cEEEEEeCCC---Ccc------------ccCCcc-cC
Confidence 3556 78999999999999999999999999999999984 8889997632 111 015555 44
Q ss_pred ChhHHHHhCCCceeEEEEECCC-CcEEEEecCCCchhhHHHHHHHHHH
Q 001380 524 DMNLWRELGVNSWPTFAVVGPN-GKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 524 ~~~l~~~~~v~~~Pt~~lid~~-G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
+..+++.|||.++|++||+|++ |++.....|..+.++|.+.|..+..
T Consensus 218 d~~la~~~gV~~vPtl~Lv~~~~~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 218 DAGQAQQLKIRTVPAVFLADPDPNQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred CHHHHHHcCCCcCCeEEEEECCCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 5678999999999999999995 5555567798888888887776544
|
This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein. |
| >cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.6e-11 Score=112.63 Aligned_cols=84 Identities=8% Similarity=0.092 Sum_probs=72.8
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHH-HH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLW-RE 530 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~-~~ 530 (1089)
.++++||+|||+||++|+.+.|.+.++++++++. +.++.|.+ |.+..++ ++
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~---------------------------d~~~~l~~~~ 79 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ-VLFVAINC---------------------------WWPQGKCRKQ 79 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEEC---------------------------CCChHHHHHh
Confidence 5689999999999999999999999999999864 88888865 4566787 58
Q ss_pred hCCCceeEEEEECCCCcEEEEecCCCchhhHHHH
Q 001380 531 LGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDL 564 (1089)
Q Consensus 531 ~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~ 564 (1089)
|+|.++||+.++ ++|+...++.|....+.+..+
T Consensus 80 ~~I~~~PTl~lf-~~g~~~~~y~G~~~~~~i~~~ 112 (113)
T cd03006 80 KHFFYFPVIHLY-YRSRGPIEYKGPMRAPYMEKF 112 (113)
T ss_pred cCCcccCEEEEE-ECCccceEEeCCCCHHHHHhh
Confidence 999999999999 889988889998888877654
|
ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44. |
| >TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459 | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.6e-12 Score=135.29 Aligned_cols=99 Identities=17% Similarity=0.180 Sum_probs=84.8
Q ss_pred CccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEE--EEcCCccCCCCCHHHHHHHHHHcCCC-CCcEE
Q 001380 167 FPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAI--VSADAFENLKPAPDIFLSASKILNVP-TSECI 243 (1089)
Q Consensus 167 ~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i--~~~~~~~~~KP~~~~~~~~l~~lgv~-p~~~v 243 (1089)
++++.++++.|+++|+++ |+||.+.......+..++.. .++..+ .+.+....+||++++|+.++++++.. +++|+
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~~~g-~~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~ 217 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGIYRYGAG-YYAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKNRML 217 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCceEeccc-HHHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcccEE
Confidence 689999999999999997 88998887776667777774 677655 56666668999999999999999975 57999
Q ss_pred EEcCCh-hhHHHHHHcCCeEEEEcC
Q 001380 244 VIEDAL-AGVQAAKAAQMRCIAVTT 267 (1089)
Q Consensus 244 ~VGD~~-~Di~aA~~aG~~~i~V~~ 267 (1089)
||||++ +||.+|+++||++++|.+
T Consensus 218 ~vGD~~~~Di~~a~~~G~~~i~v~t 242 (242)
T TIGR01459 218 MVGDSFYTDILGANRLGIDTALVLT 242 (242)
T ss_pred EECCCcHHHHHHHHHCCCeEEEEeC
Confidence 999995 999999999999999964
|
This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily) |
| >PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-11 Score=106.97 Aligned_cols=70 Identities=33% Similarity=0.488 Sum_probs=63.1
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEcCC-hhhHHHHHHcCCeEEEEcCCC-CHHHHh--hcCCcEEecCcccC
Q 001380 220 NLKPAPDIFLSASKILNVPTSECIVIEDA-LAGVQAAKAAQMRCIAVTTTL-SEERLK--EASPSLIRKEIGSV 289 (1089)
Q Consensus 220 ~~KP~~~~~~~~l~~lgv~p~~~v~VGD~-~~Di~aA~~aG~~~i~V~~g~-~~~~l~--~~~~d~vi~dl~el 289 (1089)
.+||+|.+|..+++++++++++++||||+ .+||++|+++|+.+++|.+|. ..+++. ..+|++|++++.|+
T Consensus 2 ~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG~~~~~~~~~~~~~pd~vv~~l~e~ 75 (75)
T PF13242_consen 2 CGKPSPGMLEQALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLTGVYSPEDLEKAEHKPDYVVDDLKEA 75 (75)
T ss_dssp CSTTSHHHHHHHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESSSSSCCCGHHHSSSTTSEEESSGGGH
T ss_pred CCCCcHHHHHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECCCCCCHHHHhccCCCCCEEECCHHhC
Confidence 58999999999999999999999999999 699999999999999999998 444443 46999999999874
|
... |
| >PRK10996 thioredoxin 2; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.8e-11 Score=117.88 Aligned_cols=88 Identities=24% Similarity=0.434 Sum_probs=77.4
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+|+++|+||++||++|+.+.|.|.++++++.+. +.++.|.. +.+.+++++|
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~-v~~~~vd~---------------------------~~~~~l~~~~ 102 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK-VRFVKVNT---------------------------EAERELSARF 102 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC-eEEEEEeC---------------------------CCCHHHHHhc
Confidence 5899999999999999999999999999988764 88888843 4456899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
+|.++|+++++ ++|+++.++.|....+.+.++|+++
T Consensus 103 ~V~~~Ptlii~-~~G~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 103 RIRSIPTIMIF-KNGQVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred CCCccCEEEEE-ECCEEEEEEcCCCCHHHHHHHHHHh
Confidence 99999999988 5999999999999988888888764
|
|
| >cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-11 Score=114.38 Aligned_cols=91 Identities=20% Similarity=0.259 Sum_probs=74.4
Q ss_pred cCCCEEEEEEecCCCcchhhhhhhH---HHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhH
Q 001380 451 LKGKVVVLDFWTYCCINCMHVLPDL---EFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNL 527 (1089)
Q Consensus 451 ~~gk~vll~Fwa~wC~~C~~~~p~l---~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l 527 (1089)
-.||++||+||++||++|+.+.+.+ .++.+.+++ ++.++.|... ++. +...++
T Consensus 9 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~-----~~~------------------~~~~~~ 64 (104)
T cd02953 9 AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWT-----KND------------------PEITAL 64 (104)
T ss_pred HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecC-----CCC------------------HHHHHH
Confidence 3579999999999999999999887 578888876 6899988542 110 112478
Q ss_pred HHHhCCCceeEEEEECC-CCcEEEEecCCCchhhHHHHH
Q 001380 528 WRELGVNSWPTFAVVGP-NGKLLAQLAGEGHRKDLDDLV 565 (1089)
Q Consensus 528 ~~~~~v~~~Pt~~lid~-~G~i~~~~~G~~~~~~l~~~l 565 (1089)
+++|+|.++|+++++++ +|+++.++.|..+.+++.++|
T Consensus 65 ~~~~~i~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 65 LKRFGVFGPPTYLFYGPGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred HHHcCCCCCCEEEEECCCCCCCCcccccccCHHHHHHHh
Confidence 88999999999999998 999999999999988887765
|
It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes. |
| >cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.3e-11 Score=110.97 Aligned_cols=86 Identities=22% Similarity=0.411 Sum_probs=72.3
Q ss_pred cCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHH
Q 001380 451 LKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRE 530 (1089)
Q Consensus 451 ~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~ 530 (1089)
++|+ +||+|||+||++|+.+.|.+.+++++++..++.+..|.+ +.+..++++
T Consensus 15 ~~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~---------------------------~~~~~~~~~ 66 (101)
T cd02994 15 LEGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDV---------------------------TQEPGLSGR 66 (101)
T ss_pred hCCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEc---------------------------cCCHhHHHH
Confidence 4666 679999999999999999999999988766688887743 445578999
Q ss_pred hCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHH
Q 001380 531 LGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVE 566 (1089)
Q Consensus 531 ~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~ 566 (1089)
|+|.++|+++++ ++|++ .++.|..+.+.+.++|+
T Consensus 67 ~~i~~~Pt~~~~-~~g~~-~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 67 FFVTALPTIYHA-KDGVF-RRYQGPRDKEDLISFIE 100 (101)
T ss_pred cCCcccCEEEEe-CCCCE-EEecCCCCHHHHHHHHh
Confidence 999999999998 88985 67889888888877765
|
TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. |
| >cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.4e-11 Score=112.60 Aligned_cols=85 Identities=24% Similarity=0.472 Sum_probs=73.2
Q ss_pred cCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHH
Q 001380 451 LKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRE 530 (1089)
Q Consensus 451 ~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~ 530 (1089)
..+++++|+||++||++|+.+.|.+.++++++++. +.+..|.+ |.+..++++
T Consensus 16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~~~~vd~---------------------------~~~~~~~~~ 67 (101)
T cd03003 16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV-IRIGAVNC---------------------------GDDRMLCRS 67 (101)
T ss_pred cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc-eEEEEEeC---------------------------CccHHHHHH
Confidence 35689999999999999999999999999999864 88888865 455689999
Q ss_pred hCCCceeEEEEECCCCcEEEEecCCCchhhHHHH
Q 001380 531 LGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDL 564 (1089)
Q Consensus 531 ~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~ 564 (1089)
|+|.++||++++ ++|+.+.++.|..+.+.+.++
T Consensus 68 ~~v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 68 QGVNSYPSLYVF-PSGMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred cCCCccCEEEEE-cCCCCcccCCCCCCHHHHHhh
Confidence 999999999999 789988888898887766543
|
This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. |
| >TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5 | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.9e-11 Score=132.04 Aligned_cols=71 Identities=21% Similarity=0.226 Sum_probs=59.3
Q ss_pred cCCCCCHHHHHHHHHHc--------CC-----CCCcEEEEcCCh-hhHHHHHHcCCeEEEEcCCC-CHHH-HhhcCCcEE
Q 001380 219 ENLKPAPDIFLSASKIL--------NV-----PTSECIVIEDAL-AGVQAAKAAQMRCIAVTTTL-SEER-LKEASPSLI 282 (1089)
Q Consensus 219 ~~~KP~~~~~~~~l~~l--------gv-----~p~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~-~~~~-l~~~~~d~v 282 (1089)
..+||++.+|+.+++.+ ++ ++++++||||++ +||.+|+++||.+++|.+|. ..++ .....|+++
T Consensus 230 ~~GKP~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~mIGD~~~tDI~ga~~~G~~silV~tG~~~~~~~~~~~~p~~v 309 (321)
T TIGR01456 230 TLGKPTKLTYDFAEDVLIDWEKRLSGTKPSTSPFHALYMVGDNPASDIIGAQNYGWFSCLVKTGVYNGGDDLKECKPTLI 309 (321)
T ss_pred EcCCCChHHHHHHHHHHHHHHhhhccccccCCChheEEEEcCChhhhhhhHHhCCceEEEecccccCCCCCCCCCCCCEE
Confidence 34999999999998887 43 447999999999 99999999999999999996 3322 224569999
Q ss_pred ecCcccC
Q 001380 283 RKEIGSV 289 (1089)
Q Consensus 283 i~dl~el 289 (1089)
++++.|+
T Consensus 310 v~~l~e~ 316 (321)
T TIGR01456 310 VNDVFDA 316 (321)
T ss_pred ECCHHHH
Confidence 9999887
|
The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.3e-11 Score=127.92 Aligned_cols=92 Identities=26% Similarity=0.480 Sum_probs=83.6
Q ss_pred cCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHH
Q 001380 451 LKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRE 530 (1089)
Q Consensus 451 ~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~ 530 (1089)
.+-++|||+||++||++|+..+|.|.++..+|+.+ +.+.-|++ |.+..++.+
T Consensus 41 S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~-f~LakvN~---------------------------D~~p~vAaq 92 (304)
T COG3118 41 SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK-FKLAKVNC---------------------------DAEPMVAAQ 92 (304)
T ss_pred ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc-eEEEEecC---------------------------CcchhHHHH
Confidence 35579999999999999999999999999999975 88887765 778899999
Q ss_pred hCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHH
Q 001380 531 LGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLF 571 (1089)
Q Consensus 531 ~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~ 571 (1089)
|||+++|+.|++ ++|+.+.-+.|....+.++++|+.++..
T Consensus 93 fgiqsIPtV~af-~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 93 FGVQSIPTVYAF-KDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred hCcCcCCeEEEe-eCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 999999999999 9999999999999999999999887654
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.7e-09 Score=122.62 Aligned_cols=274 Identities=19% Similarity=0.316 Sum_probs=148.8
Q ss_pred CCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeC---CCEEEEEEC
Q 001380 600 LKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAK---KNLLYVADT 676 (1089)
Q Consensus 600 l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~---g~~lyVaD~ 676 (1089)
|+.|++|++.| +|+|||++. .++|.+++.+|.....+....+- . ......+.||+++|+ ...|||+-+
T Consensus 1 L~~P~~~a~~p-dG~l~v~e~-~G~i~~~~~~g~~~~~v~~~~~v-~------~~~~~gllgia~~p~f~~n~~lYv~~t 71 (331)
T PF07995_consen 1 LNNPRSMAFLP-DGRLLVAER-SGRIWVVDKDGSLKTPVADLPEV-F------ADGERGLLGIAFHPDFASNGYLYVYYT 71 (331)
T ss_dssp ESSEEEEEEET-TSCEEEEET-TTEEEEEETTTEECEEEEE-TTT-B------TSTTBSEEEEEE-TTCCCC-EEEEEEE
T ss_pred CCCceEEEEeC-CCcEEEEeC-CceEEEEeCCCcCcceecccccc-c------ccccCCcccceeccccCCCCEEEEEEE
Confidence 57899999998 799999999 89999999888762222221010 0 111235799999984 456999876
Q ss_pred CC--------CEEEEEECCCC--e---EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC------
Q 001380 677 EN--------HALREIDFVND--T---VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ------ 737 (1089)
Q Consensus 677 ~n--------~~I~~~d~~~g--~---v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~------ 737 (1089)
.. .+|.++..+.+ . .+++... ... ....-.+-..|+|+|+| .|||+....
T Consensus 72 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~-~p~---------~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~ 140 (331)
T PF07995_consen 72 NADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTG-LPD---------TSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNA 140 (331)
T ss_dssp EE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEE-EES----------CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGG
T ss_pred cccCCCCCcceeeEEEeccCCccccccceEEEEE-eCC---------CCCCCCCCccccCCCCC-cEEEEeCCCCCcccc
Confidence 32 47777776554 1 2222210 000 00112356779999998 999986443
Q ss_pred -------cEEEEEECCCCeEEEEeCCCccccCC--CCCCCCccccCCceEEEcCCCCEEEEEeCCCCe---EEEEEcCCC
Q 001380 738 -------HQIWEHSTVDGVTRAFSGDGYERNLN--GSSSLNTSFAQPSGISLSPDFMEIYVADSESSS---IRALNLKTG 805 (1089)
Q Consensus 738 -------~~I~~~~~~~g~~~~~~g~g~~~~~~--g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~---I~~~~~~~~ 805 (1089)
++|.++++.+.. ...+. ..... .......++.+|.++++++..+.||++|.+... |.++.
T Consensus 141 ~~~~~~~G~ilri~~dG~~---p~dnP-~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~---- 212 (331)
T PF07995_consen 141 QDPNSLRGKILRIDPDGSI---PADNP-FVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIE---- 212 (331)
T ss_dssp CSTTSSTTEEEEEETTSSB----TTST-TTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-----
T ss_pred cccccccceEEEecccCcC---CCCCc-cccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEec----
Confidence 245555543210 00000 00000 011124678999999999994499999976543 33332
Q ss_pred CeEEEecCCCCCCCCcc--cc-CC----C---CCc-cccccc---cCceEEEEcc-------CCcEEEEeCCCCEEEEEe
Q 001380 806 GSRLLAGGDPIFPDNLF--KF-GD----R---DGM-GSEVLL---QHPLGVYCAK-------NGQIYVADSYNHKIKKLD 864 (1089)
Q Consensus 806 ~~~~~~g~~~~~~~~l~--~~-g~----~---dg~-~~~~~l---~~P~gva~~~-------~G~lyVaD~~n~~I~~~d 864 (1089)
.|+...+|.... .. +. . .+. .....+ ..|.|+++-. +|.++|++...++|.++.
T Consensus 213 -----~G~nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~ 287 (331)
T PF07995_consen 213 -----PGGNYGWPYCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLD 287 (331)
T ss_dssp -----TT-B--TTTBSSSCSTTSS-ECTGSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEE
T ss_pred -----cCCcCCCCCCcCCCCCCCCccccccCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEe
Confidence 222222221110 00 00 0 000 000001 3578888752 578999999999999987
Q ss_pred CCCC-eEEEEeccCCCCCCCCcccccccC-CCceEEEccCCcEEEEECCCCEEEE
Q 001380 865 PASN-RVSTLAGIGKAGFKDGAALAAQLS-EPAGIIEAQNGNLFIADTNNNIIRY 917 (1089)
Q Consensus 865 ~~~~-~v~t~~g~g~~g~~~g~~~~~~l~-~P~gi~vd~~G~lyVad~~n~~I~~ 917 (1089)
.+.+ .+......- ..+. .|.+|++++||.|||++..+++|.+
T Consensus 288 ~~~~~~~~~~~~~~-----------~~~~~r~~~v~~~pDG~Lyv~~d~~G~iyR 331 (331)
T PF07995_consen 288 LDEDGSVTEEEEFL-----------GGFGGRPRDVAQGPDGALYVSDDSDGKIYR 331 (331)
T ss_dssp EETTEEEEEEEEEC-----------TTSSS-EEEEEEETTSEEEEEE-TTTTEEE
T ss_pred eecCCCccceEEcc-----------ccCCCCceEEEEcCCCeEEEEECCCCeEeC
Confidence 6533 322211100 1233 7999999999999999988888864
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.1e-11 Score=108.69 Aligned_cols=84 Identities=27% Similarity=0.524 Sum_probs=71.5
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+|.+|++|+|+||+||+.+.|.+.+|..+|++ +.++-|++ |...++++.|
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdv---------------------------de~~~~~~~~ 70 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDV---------------------------DELEEVAKEF 70 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEec---------------------------ccCHhHHHhc
Confidence 369999999999999999999999999999997 78888855 2356899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVE 566 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~ 566 (1089)
+|.++||++++ ++|+.+.+..|.... .+++.|.
T Consensus 71 ~V~~~PTf~f~-k~g~~~~~~vGa~~~-~l~~~i~ 103 (106)
T KOG0907|consen 71 NVKAMPTFVFY-KGGEEVDEVVGANKA-ELEKKIA 103 (106)
T ss_pred CceEeeEEEEE-ECCEEEEEEecCCHH-HHHHHHH
Confidence 99999999999 999999999987543 5544443
|
|
| >cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus | Back alignment and domain information |
|---|
Probab=99.20 E-value=7e-11 Score=110.14 Aligned_cols=88 Identities=19% Similarity=0.383 Sum_probs=70.9
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCC--CEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDM--PFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~--~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
++++++|+||++||++|+.+.|.|+++++++++. ++.+..+.+ +....+++
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~---------------------------~~~~~~~~ 66 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDA---------------------------TAYSSIAS 66 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEEC---------------------------ccCHhHHh
Confidence 4679999999999999999999999999998653 366666643 23457889
Q ss_pred HhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 530 ELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
.|+|.++|+++++. +| ...++.|..+.+.+.+++++.
T Consensus 67 ~~~I~~~Pt~~l~~-~~-~~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 67 EFGVRGYPTIKLLK-GD-LAYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred hcCCccccEEEEEc-CC-CceeecCCCCHHHHHHHHHhh
Confidence 99999999999994 45 446788988888888877653
|
The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. |
| >cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.3e-11 Score=110.53 Aligned_cols=85 Identities=18% Similarity=0.317 Sum_probs=72.1
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.++++||+||++||++|+.+.|.++++.+++++ .+.+..|.+ |.+.++++.|
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~---------------------------~~~~~~~~~~ 69 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKG-KVKVGSVDC---------------------------QKYESLCQQA 69 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEEC---------------------------CchHHHHHHc
Confidence 467999999999999999999999999999865 377888854 4566899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCc-hhhHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGH-RKDLDDL 564 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~-~~~l~~~ 564 (1089)
+|.++|+++++.++|+.+.++.|... .+.+.++
T Consensus 70 ~i~~~Pt~~~~~~g~~~~~~~~G~~~~~~~l~~~ 103 (104)
T cd03004 70 NIRAYPTIRLYPGNASKYHSYNGWHRDADSILEF 103 (104)
T ss_pred CCCcccEEEEEcCCCCCceEccCCCCCHHHHHhh
Confidence 99999999999766688899999876 7776654
|
This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. |
| >KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.7e-09 Score=116.56 Aligned_cols=258 Identities=21% Similarity=0.251 Sum_probs=160.6
Q ss_pred CCCCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEec--CCCCCCCC---CCCCccccCCcceeEEeeCCCEEEE
Q 001380 600 LKFPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGS--SGEEGLRD---GSFDDATFNRPQGLAYNAKKNLLYV 673 (1089)
Q Consensus 600 l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~--~g~~g~~d---G~~~~~~f~~P~gla~d~~g~~lyV 673 (1089)
+..|..+.+|+.++-=|+.-. .++|+++... ...+..... .......+ ....+..--+|-||+++..|+.|||
T Consensus 53 ~~g~E~~~fd~~~~gp~~~v~-dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~V 131 (376)
T KOG1520|consen 53 LTGPESLLFDPQGGGPYTGVV-DGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYV 131 (376)
T ss_pred cCChhhheecccCCCceEEEE-CCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEE
Confidence 455666777764433332222 2466666542 222222211 10111112 2333445568999999999967999
Q ss_pred EECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC----------------
Q 001380 674 ADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ---------------- 737 (1089)
Q Consensus 674 aD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~---------------- 737 (1089)
||..- -|.+++++++..+.++... ..+++....++.+++ ++.+|++|+..
T Consensus 132 aDAYl-GL~~V~p~g~~a~~l~~~~------------~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~ 197 (376)
T KOG1520|consen 132 ADAYL-GLLKVGPEGGLAELLADEA------------EGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDP 197 (376)
T ss_pred Eecce-eeEEECCCCCcceeccccc------------cCeeeeecCceeEcC-CCeEEEeccccccchhheEEeeecCCC
Confidence 99754 5899999998866665322 234567888999999 45999999664
Q ss_pred -cEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCe---EEEecC
Q 001380 738 -HQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGS---RLLAGG 813 (1089)
Q Consensus 738 -~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~---~~~~g~ 813 (1089)
+++.+||+.+...+++. ..+.-|+||++++|++.+.+|+....+|+++-.++... .+++.+
T Consensus 198 ~GRl~~YD~~tK~~~VLl---------------d~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~ 262 (376)
T KOG1520|consen 198 TGRLFRYDPSTKVTKVLL---------------DGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEG 262 (376)
T ss_pred ccceEEecCcccchhhhh---------------hcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhc
Confidence 34555555555544443 45778999999999999999999999999998876443 333333
Q ss_pred CCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeC---------------------------------CC---
Q 001380 814 DPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADS---------------------------------YN--- 857 (1089)
Q Consensus 814 ~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~---------------------------------~n--- 857 (1089)
-|. .|..|..+++|+.||+=. .|
T Consensus 263 LPG---------------------~PDNIR~~~~G~fWVal~~~~~~~~~~~~~~p~vr~~~~~~~~~~~~~~~~~~~~~ 321 (376)
T KOG1520|consen 263 LPG---------------------YPDNIRRDSTGHFWVALHSKRSTLWRLLMKYPWVRKFIAKLPKYMELLYFLNNGGK 321 (376)
T ss_pred CCC---------------------CCcceeECCCCCEEEEEecccchHHHhhhcChHHHHHHHhhccchhhhhhhhccCC
Confidence 322 466677777888888751 11
Q ss_pred --CEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEc-cCCcEEEEECCCCEEEEEeC
Q 001380 858 --HKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEA-QNGNLFIADTNNNIIRYLDL 920 (1089)
Q Consensus 858 --~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd-~~G~lyVad~~n~~I~~~~~ 920 (1089)
-.|++.|.+|+.+..+-.. .| ...-..+.+. .+|+||+..-.++-|.++++
T Consensus 322 p~~~V~~~d~~G~il~~lhD~--~g----------~~~~~~sev~E~dg~LyiGS~~~p~i~~lkl 375 (376)
T KOG1520|consen 322 PHSAVKLSDETGKILESLHDK--EG----------KVITLVSEVGEHDGHLYIGSLFNPYIARLKL 375 (376)
T ss_pred CceEEEEecCCCcEEEEEecC--CC----------CceEEEEEEeecCCeEEEcccCcceeEEEec
Confidence 3455555565555555421 11 1112233333 36788888888888877765
|
|
| >COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.1e-10 Score=108.13 Aligned_cols=137 Identities=24% Similarity=0.358 Sum_probs=112.0
Q ss_pred CCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCC--hhcHHHHH
Q 001380 430 VPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDN--EKDLEAIR 507 (1089)
Q Consensus 430 ~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~--~~~~~~~~ 507 (1089)
+-+|+. .+++|++++| ++++||++||.--||-|+.-. +...|+.|+++|+++|+.|+|+-+..|.. ..+.++++
T Consensus 5 ~yd~~~--~~~~G~~~~l-~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~ 80 (162)
T COG0386 5 IYDFSV--KDIDGEPVSL-SDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIA 80 (162)
T ss_pred ccccee--eccCCCCccH-HHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHH
Confidence 345663 4679999999 999999999999999999887 67899999999999999999999998864 35788999
Q ss_pred HHHHH-cCCccceeec------CChhHHHHh-----------CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 508 NAVLR-YGISHPVVND------GDMNLWREL-----------GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 508 ~~~~~-~~~~~~v~~d------~~~~l~~~~-----------~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
+|++. ||.+||+..- ....+++.+ .|.+--+-||||++|+++.++.....+++++..|+.+|
T Consensus 81 ~fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL 160 (162)
T COG0386 81 KFCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLL 160 (162)
T ss_pred HHHHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHh
Confidence 99875 8999997631 223444433 23445688999999999999998889999999888877
Q ss_pred H
Q 001380 570 L 570 (1089)
Q Consensus 570 ~ 570 (1089)
+
T Consensus 161 ~ 161 (162)
T COG0386 161 A 161 (162)
T ss_pred c
Confidence 5
|
|
| >KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.5e-11 Score=114.15 Aligned_cols=107 Identities=26% Similarity=0.379 Sum_probs=92.1
Q ss_pred CCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCC--CCEEEEEEeCCCCCChhcHHHHHHHHHHcCCcc
Q 001380 440 LNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD--MPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISH 517 (1089)
Q Consensus 440 ~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~--~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (1089)
.+|..+..+..++||+|.++|-|.||++|+...|.|.+++++.++ ..+.||-||+ +.+.+....+.+.++.+|
T Consensus 20 ~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~-----D~~~~~~~~y~~~~~~~W 94 (157)
T KOG2501|consen 20 QDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSS-----DRDEESLDEYMLEHHGDW 94 (157)
T ss_pred cCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEec-----CCCHHHHHHHHHhcCCCe
Confidence 366666554689999999999999999999999999999999875 3699999976 678889999999999998
Q ss_pred cee---ecCChhHHHHhCCCceeEEEEECCCCcEEEE
Q 001380 518 PVV---NDGDMNLWRELGVNSWPTFAVVGPNGKLLAQ 551 (1089)
Q Consensus 518 ~v~---~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~ 551 (1089)
..+ .+...++.+.|+|.++|+..++.++|+++..
T Consensus 95 ~~iPf~d~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~ 131 (157)
T KOG2501|consen 95 LAIPFGDDLIQKLSEKYEVKGIPALVILKPDGTVVTE 131 (157)
T ss_pred EEecCCCHHHHHHHHhcccCcCceeEEecCCCCEehH
Confidence 544 4456789999999999999999999988765
|
|
| >cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.6e-11 Score=110.41 Aligned_cols=83 Identities=20% Similarity=0.423 Sum_probs=71.0
Q ss_pred CEEEEEEecCCCcchhhhhhhHHHHHHHcCC--CCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 454 KVVVLDFWTYCCINCMHVLPDLEFLEKKYKD--MPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 454 k~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~--~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
+++||+||++||++|+.++|.++++++++++ ..+.++.|.+ +.+..+++.|
T Consensus 17 ~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~---------------------------~~~~~~~~~~ 69 (102)
T cd03005 17 GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDC---------------------------TQHRELCSEF 69 (102)
T ss_pred CCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEEC---------------------------CCChhhHhhc
Confidence 3599999999999999999999999999976 3588888843 3456789999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDL 564 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~ 564 (1089)
+|.++|+++++ ++|+.+.++.|..+.+.+.++
T Consensus 70 ~v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~ 101 (102)
T cd03005 70 QVRGYPTLLLF-KDGEKVDKYKGTRDLDSLKEF 101 (102)
T ss_pred CCCcCCEEEEE-eCCCeeeEeeCCCCHHHHHhh
Confidence 99999999999 789888889999888777655
|
Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.7e-09 Score=109.68 Aligned_cols=220 Identities=15% Similarity=0.221 Sum_probs=129.5
Q ss_pred CCCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC
Q 001380 597 TSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT 676 (1089)
Q Consensus 597 ~~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~ 676 (1089)
+.-...+.||++++.++.||........|+.++.+|++++.+...| |..|.||++..+|. +++++-
T Consensus 18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g-------------~~D~EgI~y~g~~~-~vl~~E 83 (248)
T PF06977_consen 18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDG-------------FGDYEGITYLGNGR-YVLSEE 83 (248)
T ss_dssp TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS--------------SSEEEEEE-STTE-EEEEET
T ss_pred CCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCC-------------CCCceeEEEECCCE-EEEEEc
Confidence 3445668999999988999977777899999999999999887653 45889999986554 777887
Q ss_pred CCCEEEEEECC--CCeE-----EEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC-cEEEEEEC--C
Q 001380 677 ENHALREIDFV--NDTV-----RTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ-HQIWEHST--V 746 (1089)
Q Consensus 677 ~n~~I~~~d~~--~g~v-----~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~-~~I~~~~~--~ 746 (1089)
..++|..++.. +..+ ..+. .+..... =..--|||+|+.++.||++-... ..|+.++. .
T Consensus 84 r~~~L~~~~~~~~~~~~~~~~~~~~~-l~~~~~~-----------N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~ 151 (248)
T PF06977_consen 84 RDQRLYIFTIDDDTTSLDRADVQKIS-LGFPNKG-----------NKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPG 151 (248)
T ss_dssp TTTEEEEEEE----TT--EEEEEEEE----S--------------SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-
T ss_pred CCCcEEEEEEeccccccchhhceEEe-cccccCC-----------CcceEEEEEcCCCCEEEEEeCCCChhhEEEccccC
Confidence 78899888763 2222 1221 1111000 01356999999999999986553 36777775 2
Q ss_pred CCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCC
Q 001380 747 DGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGD 826 (1089)
Q Consensus 747 ~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~ 826 (1089)
...+.......... ....+..|++|+++|..+.|||...++.+|..++.++..+..+.=.. |
T Consensus 152 ~~~~~~~~~~~~~~-------~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~----------g- 213 (248)
T PF06977_consen 152 GFDLFVSDDQDLDD-------DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDR----------G- 213 (248)
T ss_dssp SS--EEEE-HHHH--------HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-ST----------T-
T ss_pred ccceeecccccccc-------ccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCC----------c-
Confidence 22222222111100 12345679999999998899999999999999998755444331100 0
Q ss_pred CCCccccccccCceEEEEccCCcEEEEeCCCCEEEEE
Q 001380 827 RDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKL 863 (1089)
Q Consensus 827 ~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~ 863 (1089)
. .+-...+..|-|||+|++|+|||+..-| ..++|
T Consensus 214 ~--~gl~~~~~QpEGIa~d~~G~LYIvsEpN-lfy~f 247 (248)
T PF06977_consen 214 F--HGLSKDIPQPEGIAFDPDGNLYIVSEPN-LFYRF 247 (248)
T ss_dssp G--GG-SS---SEEEEEE-TT--EEEEETTT-EEEEE
T ss_pred c--cCcccccCCccEEEECCCCCEEEEcCCc-eEEEe
Confidence 0 0112347789999999999999998754 65555
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.2e-11 Score=114.20 Aligned_cols=106 Identities=22% Similarity=0.283 Sum_probs=74.2
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHH---HcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEK---KYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLW 528 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~---~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~ 528 (1089)
+||++|+.||++||++|+...+.+.+..+ .+++ ++.++.+.+ ++..+...++....+...+. ..+.+++
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~l~ 75 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD-DFQVIFVNI-----DDSRDESEAVLDFDGQKNVR--LSNKELA 75 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC-ECEEEECES-----HSHHHHHHHHHSHTCHSSCH--HHHHHHH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEEEec-----CCcccccccccccccchhhh--HHHHHHH
Confidence 68999999999999999999888886443 3333 478888854 44444444454444432222 2345899
Q ss_pred HHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHH
Q 001380 529 RELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLV 565 (1089)
Q Consensus 529 ~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l 565 (1089)
+.|||.++|+++++|++|+++.++.|..+.+++.++|
T Consensus 76 ~~~~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 76 QRYGVNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp HHTT--SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred HHcCCCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 9999999999999999999999999999998887664
|
... |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.6e-09 Score=120.50 Aligned_cols=215 Identities=19% Similarity=0.273 Sum_probs=137.2
Q ss_pred cCCcceeEEeeCCCEEEEEECCC------------CEEEEEECCC--Ce---EEEEecCCCCCCCCCCCCcccccccCCc
Q 001380 656 FNRPQGLAYNAKKNLLYVADTEN------------HALREIDFVN--DT---VRTLAGNGTKGSDYQGGEKGTSQLLNSP 718 (1089)
Q Consensus 656 f~~P~gla~d~~g~~lyVaD~~n------------~~I~~~d~~~--g~---v~~~ag~g~~~~~~~~~~~~~~~~l~~P 718 (1089)
+..|.+|++|++|+ |||++..+ .+|++++..+ |. ++.++ ..+..|
T Consensus 13 ~~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa-----------------~~l~~p 74 (367)
T TIGR02604 13 LRNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA-----------------EELSMV 74 (367)
T ss_pred cCCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee-----------------cCCCCc
Confidence 67999999999999 99998532 3787776532 22 34444 125689
Q ss_pred eeEEEecCCCEEEEEECCCcEEEEEECCCC------eEEEEe-CCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEe
Q 001380 719 WDVCYKPINEKVYIAMAGQHQIWEHSTVDG------VTRAFS-GDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVAD 791 (1089)
Q Consensus 719 ~~la~~~~g~~lyvad~~~~~I~~~~~~~g------~~~~~~-g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad 791 (1089)
.+|++.++| |||++. .+|+++...++ ..+.+. +-+.. + ......++++++++|| +||+++
T Consensus 75 ~Gi~~~~~G--lyV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~----~----~~~~~~~~~l~~gpDG-~LYv~~ 141 (367)
T TIGR02604 75 TGLAVAVGG--VYVATP--PDILFLRDKDGDDKADGEREVLLSGFGGQ----I----NNHHHSLNSLAWGPDG-WLYFNH 141 (367)
T ss_pred cceeEecCC--EEEeCC--CeEEEEeCCCCCCCCCCccEEEEEccCCC----C----CcccccccCceECCCC-CEEEec
Confidence 999999866 999864 57888843221 223332 11100 0 0113458899999998 999988
Q ss_pred CCC-------------------CeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEE
Q 001380 792 SES-------------------SSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYV 852 (1089)
Q Consensus 792 ~~~-------------------~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyV 852 (1089)
... +.|.+++++++....++.+ +..|.|++++++|++|+
T Consensus 142 G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G----------------------~rnp~Gl~~d~~G~l~~ 199 (367)
T TIGR02604 142 GNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHG----------------------FQNPYGHSVDSWGDVFF 199 (367)
T ss_pred ccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecC----------------------cCCCccceECCCCCEEE
Confidence 631 5688888887766666542 67899999999999999
Q ss_pred EeCCCCEEEEEeCCC--C---eEEEE------eccCCCCCCC-------------CcccccccCCCceEEEcc-------
Q 001380 853 ADSYNHKIKKLDPAS--N---RVSTL------AGIGKAGFKD-------------GAALAAQLSEPAGIIEAQ------- 901 (1089)
Q Consensus 853 aD~~n~~I~~~d~~~--~---~v~t~------~g~g~~g~~~-------------g~~~~~~l~~P~gi~vd~------- 901 (1089)
+|..++...++++-. + ..... ...+...... -.........|.|+++-.
T Consensus 200 tdn~~~~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~ 279 (367)
T TIGR02604 200 CDNDDPPLCRVTPVAEGGRNGYQSFNGRRYDHADRGADHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEE 279 (367)
T ss_pred EccCCCceeEEcccccccccCCCCCCCcccccccccccccccccccccccccccccccccCCCccccEEEEeCCCcCCHH
Confidence 998776666554311 0 00000 0000000000 000111235799999862
Q ss_pred -CCcEEEEECCCCEEEEEeCCCC
Q 001380 902 -NGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 902 -~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
.|+++|++...++|.++.++..
T Consensus 280 ~~g~~fv~~~~~~~v~~~~l~~~ 302 (367)
T TIGR02604 280 YRGLLLVGDAHGQLIVRYSLEPK 302 (367)
T ss_pred HCCCEEeeeccCCEEEEEEeecC
Confidence 4679999999999999998743
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.1e-11 Score=127.81 Aligned_cols=185 Identities=21% Similarity=0.220 Sum_probs=104.2
Q ss_pred EEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHH--HHHHHHHHHHhc
Q 001380 82 VLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAK--KRFFEIYLDKYA 159 (1089)
Q Consensus 82 ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 159 (1089)
|+||+||||+++...+..+.+.+....+...+.....+..+++...+.+.+....++.. ..++.. ......|.....
T Consensus 1 ~lfD~DGvL~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~-~~~~iits~~~~~~~l~~~~ 79 (236)
T TIGR01460 1 FLFDIDGVLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDV-SPDQIITSGSVTKDLLRQRF 79 (236)
T ss_pred CEEeCcCccCcCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCC-CHHHeeeHHHHHHHHHHHhC
Confidence 58999999999988777555444333333344445556667777777777766555432 222221 111122222211
Q ss_pred CCCCCCCCccHHHHHHHHHhCCCe----------------EEEEcCCCh----Hh---HHHHHHHCCCC-----------
Q 001380 160 KPNSGIGFPGALELINQCKSKGLK----------------VAVASSADR----IK---VDANLAAAGLP----------- 205 (1089)
Q Consensus 160 ~~~~~~~~pG~~~lL~~Lk~~Gi~----------------vaIvSn~~~----~~---~~~~l~~~gl~----------- 205 (1089)
.. ...+.-|...+.+.|++.|+. -+|+-+.+. .. +...+++-+..
T Consensus 80 ~~-~~v~v~G~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~a~~~l~~~~~~~i~tN~d~~~~ 158 (236)
T TIGR01460 80 EG-EKVYVIGVGELRESLEGLGFRNDFFDDIDHLAIEKIPAAVIVGEPSDFSYDELAKAAYLLAEGDVPFIAANRDDLVR 158 (236)
T ss_pred CC-CEEEEECCHHHHHHHHHcCCcCcccCcccccccCCCCeEEEECCCCCcCHHHHHHHHHHHhCCCCeEEEECCCCCCC
Confidence 11 112333444455555555542 122222111 11 11112211011
Q ss_pred ----------CCCccE---EEEcCCccCCCCCHHHHHHHHHHcCCCCCcE-EEEcCCh-hhHHHHHHcCCeEEEEcCC
Q 001380 206 ----------VSMFDA---IVSADAFENLKPAPDIFLSASKILNVPTSEC-IVIEDAL-AGVQAAKAAQMRCIAVTTT 268 (1089)
Q Consensus 206 ----------~~~fd~---i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~-v~VGD~~-~Di~aA~~aG~~~i~V~~g 268 (1089)
..+++. +.+......+||++.+|+.++++++++++++ +||||++ +||.+|+++|+++++|.+|
T Consensus 159 ~~~g~~~~~~g~~~~~i~~~~g~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~~G~~~i~v~~G 236 (236)
T TIGR01460 159 LGDGRFRPGAGAIAAGIKELSGREPTVVGKPSPAIYRAALNLLQARPERRDVMVGDNLRTDILGAKNAGFDTLLVLTG 236 (236)
T ss_pred CCCCcEeecchHHHHHHHHHhCceeeeecCCCHHHHHHHHHHhCCCCccceEEECCCcHHHHHHHHHCCCcEEEEecC
Confidence 011111 1111222357999999999999999998887 9999999 8999999999999999875
|
Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant. |
| >TIGR01126 pdi_dom protein disulfide-isomerase domain | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-10 Score=108.42 Aligned_cols=88 Identities=22% Similarity=0.409 Sum_probs=75.3
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCC-CEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDM-PFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRE 530 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~-~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~ 530 (1089)
++++++|.||++||++|+.+.+.++++++.++.. ++.++.+.+ |.+..+++.
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~---------------------------~~~~~~~~~ 64 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDA---------------------------TAEKDLASR 64 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEc---------------------------cchHHHHHh
Confidence 7899999999999999999999999999998865 377777743 445688999
Q ss_pred hCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHH
Q 001380 531 LGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEA 567 (1089)
Q Consensus 531 ~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~ 567 (1089)
|+|.++|+++++++++. ...+.|....+.+..+|++
T Consensus 65 ~~i~~~P~~~~~~~~~~-~~~~~g~~~~~~l~~~i~~ 100 (102)
T TIGR01126 65 FGVSGFPTIKFFPKGKK-PVDYEGGRDLEAIVEFVNE 100 (102)
T ss_pred CCCCcCCEEEEecCCCc-ceeecCCCCHHHHHHHHHh
Confidence 99999999999988877 6788998888888887765
|
This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK. |
| >cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1 | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.7e-10 Score=104.44 Aligned_cols=77 Identities=18% Similarity=0.114 Sum_probs=67.2
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+|+|||+|||+||++|+.+-|.|.+++++|++. +.++-|.+ |...++++.|
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDV---------------------------Dev~dva~~y 64 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDV---------------------------DKVPVYTQYF 64 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc-eEEEEEec---------------------------cccHHHHHhc
Confidence 6899999999999999999999999999999754 77777754 6678899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCc
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGH 557 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~ 557 (1089)
+|++.|+++++ ++|+-+....|.++
T Consensus 65 ~I~amPtfvff-kngkh~~~d~gt~~ 89 (114)
T cd02986 65 DISYIPSTIFF-FNGQHMKVDYGSPD 89 (114)
T ss_pred CceeCcEEEEE-ECCcEEEEecCCCC
Confidence 99999999999 88888777666553
|
Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. |
| >cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-10 Score=109.12 Aligned_cols=86 Identities=19% Similarity=0.286 Sum_probs=71.2
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecC-ChhHHH-
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDG-DMNLWR- 529 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~-~~~l~~- 529 (1089)
+||++||+||++||++|+.+.|.+.++++++++.++.+..|.+ |. +..+++
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~---------------------------d~~~~~~~~~ 72 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNA---------------------------DGEQREFAKE 72 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEEC---------------------------CccchhhHHh
Confidence 5799999999999999999999999999999876788888854 22 345665
Q ss_pred HhCCCceeEEEEECCCCcEEEEecCC-CchhhHHHH
Q 001380 530 ELGVNSWPTFAVVGPNGKLLAQLAGE-GHRKDLDDL 564 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i~~~~~G~-~~~~~l~~~ 564 (1089)
.|+|..+|++++++++++....+.|. .+.+.+..+
T Consensus 73 ~~~v~~~Pti~~f~~~~~~~~~y~g~~~~~~~l~~f 108 (109)
T cd02993 73 ELQLKSFPTILFFPKNSRQPIKYPSEQRDVDSLLMF 108 (109)
T ss_pred hcCCCcCCEEEEEcCCCCCceeccCCCCCHHHHHhh
Confidence 49999999999998888877888885 566666554
|
APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-08 Score=116.28 Aligned_cols=273 Identities=18% Similarity=0.210 Sum_probs=164.0
Q ss_pred CceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEE
Q 001380 603 PGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHAL 681 (1089)
Q Consensus 603 P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I 681 (1089)
+.++++++++.++||++. .+.|.++|+. ++.+.++..+ ..|.|++++++|+++|+++...+.+
T Consensus 39 h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~~v~~i~~G---------------~~~~~i~~s~DG~~~~v~n~~~~~v 102 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANR-DGTVSVIDLATGKVVATIKVG---------------GNPRGIAVSPDGKYVYVANYEPGTV 102 (369)
T ss_dssp EEEEE-TT-SSEEEEEET-TSEEEEEETTSSSEEEEEE-S---------------SEEEEEEE--TTTEEEEEEEETTEE
T ss_pred eeEEEecCCCCEEEEEcC-CCeEEEEECCcccEEEEEecC---------------CCcceEEEcCCCCEEEEEecCCCce
Confidence 455677776678999975 5899999996 7788887665 2689999999999999999999999
Q ss_pred EEEECCCCe-EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCe---EEEEeCCC
Q 001380 682 REIDFVNDT-VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGV---TRAFSGDG 757 (1089)
Q Consensus 682 ~~~d~~~g~-v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~---~~~~~g~g 757 (1089)
..+|.++.+ +.++...+..... .-+.+.+|..++....++++....++||.+|..+.. ++.+. .
T Consensus 103 ~v~D~~tle~v~~I~~~~~~~~~----------~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~-~- 170 (369)
T PF02239_consen 103 SVIDAETLEPVKTIPTGGMPVDG----------PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK-V- 170 (369)
T ss_dssp EEEETTT--EEEEEE--EE-TTT----------S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---
T ss_pred eEeccccccceeecccccccccc----------cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec-c-
Confidence 999987754 4444322211100 112445777777776777788889999999976542 22222 1
Q ss_pred ccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEec-C-CCCCCC--Cc--ccc------C
Q 001380 758 YERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAG-G-DPIFPD--NL--FKF------G 825 (1089)
Q Consensus 758 ~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g-~-~~~~~~--~l--~~~------g 825 (1089)
-..|++..+++++++++++...++.|..++..++....... + .+.... +. ..+ +
T Consensus 171 --------------g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~ 236 (369)
T PF02239_consen 171 --------------GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATS 236 (369)
T ss_dssp ---------------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEE
T ss_pred --------------cccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeec
Confidence 13689999999998999998888999999988765543321 1 110000 00 000 0
Q ss_pred CC-CC---------cc----c-------cccccCceEEEEccCC-cEEEE---eCCCCEEEEEeCCCCeE-EEEeccCCC
Q 001380 826 DR-DG---------MG----S-------EVLLQHPLGVYCAKNG-QIYVA---DSYNHKIKKLDPASNRV-STLAGIGKA 879 (1089)
Q Consensus 826 ~~-dg---------~~----~-------~~~l~~P~gva~~~~G-~lyVa---D~~n~~I~~~d~~~~~v-~t~~g~g~~ 879 (1089)
+. .. .. . -..-..|..+...|++ ++||. ...+..|.+||.++..+ .++.. +.
T Consensus 237 ~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~-~~- 314 (369)
T PF02239_consen 237 GLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITP-GP- 314 (369)
T ss_dssp BSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHH-HH-
T ss_pred cccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEec-cC-
Confidence 00 00 00 0 0011245778888888 47776 45578999999887644 33321 00
Q ss_pred CCCCCcccccccCCCceEEEccCCc-EEEEECCCC-EEEEEeCCCCCceEEEEe
Q 001380 880 GFKDGAALAAQLSEPAGIIEAQNGN-LFIADTNNN-IIRYLDLNKEEPELQTLE 931 (1089)
Q Consensus 880 g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~~n~-~I~~~~~~~~~~~~~~l~ 931 (1089)
-..+..+.+.++|+ +||+.++.+ +|.++|..+. ..+..+.
T Consensus 315 -----------~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl-~~~~~i~ 356 (369)
T PF02239_consen 315 -----------GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL-KEKKRIP 356 (369)
T ss_dssp -----------T--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT-EEEEEEE
T ss_pred -----------CCcEeccEECCCCCEEEEEEecCCCEEEEEECCCc-EEEEEEE
Confidence 01266888999995 999999988 9999999887 2344444
|
... |
| >KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.2e-10 Score=106.97 Aligned_cols=125 Identities=15% Similarity=0.249 Sum_probs=105.4
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCC-EEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCCh
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGK-VVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNE 500 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk-~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~ 500 (1089)
..++|+.+|||++.++ ||+.++| .++.|+ +||++|| +...|.|..+...+++-|++++..+.+|+|+|.
T Consensus 62 ~v~~Gd~iPD~tL~de--dg~sisL-kkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~------ 132 (211)
T KOG0855|consen 62 KVNKGDAIPDFTLKDE--DGKSISL-KKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSG------ 132 (211)
T ss_pred eeecCCcCCCcccccC--CCCeeee-eeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeecc------
Confidence 5689999999997655 9999999 788775 8888888 567788999999999999999988999999974
Q ss_pred hcHHHHHHHHHHcCCccceeecCChhHHHHhCCCcee-------EEEEECCCCcEEEEecCCC
Q 001380 501 KDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWP-------TFAVVGPNGKLLAQLAGEG 556 (1089)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~P-------t~~lid~~G~i~~~~~G~~ 556 (1089)
|+....++|..+++++|..+.|+.+++.+.+|+...| ..|++|+.|.......-..
T Consensus 133 D~s~sqKaF~sKqnlPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~k~~ik~~~i 195 (211)
T KOG0855|consen 133 DDSASQKAFASKQNLPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGVKQLIKNNQI 195 (211)
T ss_pred CchHHHHHhhhhccCCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCCeEEEEEeccc
Confidence 6788889999999999999999999999999987543 6888887776544433333
|
|
| >cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.7e-10 Score=108.58 Aligned_cols=88 Identities=23% Similarity=0.430 Sum_probs=72.6
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.|+++||+||++||++|+++.|.+.++++++.+ .+.++.|+++ . +.+..+++.|
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~-----~--------------------~~~~~~~~~~ 70 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCD-----E--------------------DKNKPLCGKY 70 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC-CceEEEEecC-----c--------------------cccHHHHHHc
Confidence 578999999999999999999999999999875 3778888651 1 2256899999
Q ss_pred CCCceeEEEEECCCC----cEEEEecCCCchhhHHHHH
Q 001380 532 GVNSWPTFAVVGPNG----KLLAQLAGEGHRKDLDDLV 565 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G----~i~~~~~G~~~~~~l~~~l 565 (1089)
+|.++|+++++++++ .+...+.|..+.+.+.++|
T Consensus 71 ~i~~~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 71 GVQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred CCCcCCEEEEEeCCCcccccccccccCccCHHHHHHHh
Confidence 999999999998776 3556788888888887765
|
MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. |
| >cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.8e-10 Score=104.56 Aligned_cols=85 Identities=14% Similarity=0.347 Sum_probs=73.7
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+|+++++||++||+.|+.+.|.+.++.+++.+ ++.++.|.. |.+.++++.|
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~---------------------------d~~~~l~~~~ 63 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDI---------------------------DEDQEIAEAA 63 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEEC---------------------------CCCHHHHHHC
Confidence 578999999999999999999999999999875 477777743 4566789999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLV 565 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l 565 (1089)
+|.++|+++++ ++|+++.++.|....+++.+++
T Consensus 64 ~v~~vPt~~i~-~~g~~v~~~~g~~~~~~~~~~l 96 (97)
T cd02949 64 GIMGTPTVQFF-KDKELVKEISGVKMKSEYREFI 96 (97)
T ss_pred CCeeccEEEEE-ECCeEEEEEeCCccHHHHHHhh
Confidence 99999999999 5899999999988888777665
|
The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. |
| >cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.4e-10 Score=107.68 Aligned_cols=88 Identities=14% Similarity=0.083 Sum_probs=76.2
Q ss_pred CCEEEEEEecCCCcc--hh--hhhhhHHHHHHHc-CCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhH
Q 001380 453 GKVVVLDFWTYCCIN--CM--HVLPDLEFLEKKY-KDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNL 527 (1089)
Q Consensus 453 gk~vll~Fwa~wC~~--C~--~~~p~l~~l~~~~-~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l 527 (1089)
.+++|++||+.||++ |+ ...|.+.+++.++ +..++.+.-|++ |.+.++
T Consensus 27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~---------------------------d~~~~L 79 (120)
T cd03065 27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDS---------------------------KKDAKV 79 (120)
T ss_pred CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeC---------------------------CCCHHH
Confidence 358999999999988 99 8888899998887 234588888865 677899
Q ss_pred HHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 528 WRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 528 ~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
+++|||.++||++++ ++|+++. +.|....+.+.++|++++
T Consensus 80 a~~~~I~~iPTl~lf-k~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 80 AKKLGLDEEDSIYVF-KDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred HHHcCCccccEEEEE-ECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 999999999999999 7999887 999999999999998765
|
It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2 |
| >smart00577 CPDc catalytic domain of ctd-like phosphatases | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.5e-11 Score=117.32 Aligned_cols=94 Identities=15% Similarity=0.114 Sum_probs=86.1
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEE
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIV 244 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~ 244 (1089)
.++||+.++|++|+ ++++++|+|++..+.++.+++++++...+|+.+++++++...||+ |.++++++|.+|++|+|
T Consensus 45 ~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l~~~~~~f~~i~~~~d~~~~KP~---~~k~l~~l~~~p~~~i~ 120 (148)
T smart00577 45 KKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLLDPKKYFGYRRLFRDECVFVKGK---YVKDLSLLGRDLSNVII 120 (148)
T ss_pred EECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHhCcCCCEeeeEEECccccccCCe---EeecHHHcCCChhcEEE
Confidence 67999999999999 569999999999999999999999952456999999999999997 99999999999999999
Q ss_pred EcCChhhHHHHHHcCCeE
Q 001380 245 IEDALAGVQAAKAAQMRC 262 (1089)
Q Consensus 245 VGD~~~Di~aA~~aG~~~ 262 (1089)
|||+..|+++|.++|+..
T Consensus 121 i~Ds~~~~~aa~~ngI~i 138 (148)
T smart00577 121 IDDSPDSWPFHPENLIPI 138 (148)
T ss_pred EECCHHHhhcCccCEEEe
Confidence 999999999999999654
|
|
| >TIGR01686 FkbH FkbH-like domain | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.7e-10 Score=128.71 Aligned_cols=90 Identities=22% Similarity=0.166 Sum_probs=83.4
Q ss_pred CCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHH----CCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCc
Q 001380 166 GFPGALELINQCKSKGLKVAVASSADRIKVDANLAA----AGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSE 241 (1089)
Q Consensus 166 ~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~----~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~ 241 (1089)
+++|+.++|+.|+++|++++|+|++....++..+++ +++. ++|+.+.+. .||+++.+.++++++|+.+++
T Consensus 32 ~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~-~~f~~~~~~-----~~pk~~~i~~~~~~l~i~~~~ 105 (320)
T TIGR01686 32 LHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQA-EDFDARSIN-----WGPKSESLRKIAKKLNLGTDS 105 (320)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcH-HHeeEEEEe-----cCchHHHHHHHHHHhCCCcCc
Confidence 578999999999999999999999999999999999 8886 889888665 589999999999999999999
Q ss_pred EEEEcCChhhHHHHHHcCCe
Q 001380 242 CIVIEDALAGVQAAKAAQMR 261 (1089)
Q Consensus 242 ~v~VGD~~~Di~aA~~aG~~ 261 (1089)
++||||+..|+.++++++-.
T Consensus 106 ~vfidD~~~d~~~~~~~lp~ 125 (320)
T TIGR01686 106 FLFIDDNPAERANVKITLPV 125 (320)
T ss_pred EEEECCCHHHHHHHHHHCCC
Confidence 99999999999999997743
|
The C-terminal portion of this domain is unique to this family (by BLAST). |
| >TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.8e-10 Score=132.59 Aligned_cols=92 Identities=23% Similarity=0.372 Sum_probs=83.7
Q ss_pred CCccHHHHHHHHHhCCCeEEEEcCCCh------------HhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHH
Q 001380 166 GFPGALELINQCKSKGLKVAVASSADR------------IKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASK 233 (1089)
Q Consensus 166 ~~pG~~~lL~~Lk~~Gi~vaIvSn~~~------------~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~ 233 (1089)
++||+.+.|+.|+++|++++|+||... ..+..+++.+|+. |+.+++.+.....||++.|+.++++
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgip---fdviia~~~~~~RKP~pGm~~~a~~ 274 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVP---FQVFIAIGAGFYRKPLTGMWDHLKE 274 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCc---eEEEEeCCCCCCCCCCHHHHHHHHH
Confidence 689999999999999999999999654 4578899999996 8889988888889999999999999
Q ss_pred HcC----CCCCcEEEEcCChhhHHHHHHcCC
Q 001380 234 ILN----VPTSECIVIEDALAGVQAAKAAQM 260 (1089)
Q Consensus 234 ~lg----v~p~~~v~VGD~~~Di~aA~~aG~ 260 (1089)
+++ +++++++||||+..|+++|+++|.
T Consensus 275 ~~~~~~~Id~~~S~~VGDaagr~~~g~~ag~ 305 (526)
T TIGR01663 275 EANDGTEIQEDDCFFVGDAAGRPANGKAAGK 305 (526)
T ss_pred hcCcccCCCHHHeEEeCCcccchHHHHhcCC
Confidence 985 899999999999999999998885
|
Note that the EC number for the kinase function is: 2.7.1.78 |
| >cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.5e-10 Score=107.28 Aligned_cols=86 Identities=20% Similarity=0.349 Sum_probs=70.3
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCC----C-CEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD----M-PFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMN 526 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~----~-~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~ 526 (1089)
.++++||+|||+||++|+.+.|.++++++++++ . .+.+..|.+ |.+..
T Consensus 17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~---------------------------d~~~~ 69 (108)
T cd02996 17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDC---------------------------DKESD 69 (108)
T ss_pred cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEEC---------------------------CCCHH
Confidence 468999999999999999999999999987642 1 377777754 56678
Q ss_pred HHHHhCCCceeEEEEECCCCcE-EEEecCCCchhhHHHHH
Q 001380 527 LWRELGVNSWPTFAVVGPNGKL-LAQLAGEGHRKDLDDLV 565 (1089)
Q Consensus 527 l~~~~~v~~~Pt~~lid~~G~i-~~~~~G~~~~~~l~~~l 565 (1089)
++++|+|.++|+++++ ++|++ ...+.|..+.+.+.++|
T Consensus 70 l~~~~~v~~~Ptl~~~-~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 70 IADRYRINKYPTLKLF-RNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred HHHhCCCCcCCEEEEE-eCCcCcceecCCCCCHHHHHhhC
Confidence 9999999999999999 78884 46688888887776653
|
It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. |
| >cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.9e-10 Score=103.66 Aligned_cols=82 Identities=21% Similarity=0.184 Sum_probs=71.8
Q ss_pred CCCEEEEEEecCC--CcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 452 KGKVVVLDFWTYC--CINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 452 ~gk~vll~Fwa~w--C~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
.|.++||+||+.| ||+|+.+.|.|.+++++|++. +.++-|.. |.+.+++.
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdi---------------------------d~~~~la~ 77 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGR---------------------------ADEQALAA 77 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEEC---------------------------CCCHHHHH
Confidence 5788999999997 999999999999999999865 66767743 56779999
Q ss_pred HhCCCceeEEEEECCCCcEEEEecCCCchhhHH
Q 001380 530 ELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLD 562 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~ 562 (1089)
.|+|.++||++++ ++|+++.+..|....+++.
T Consensus 78 ~f~V~sIPTli~f-kdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 78 RFGVLRTPALLFF-RDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred HcCCCcCCEEEEE-ECCEEEEEEeCccCHHHHh
Confidence 9999999999999 8999999999988776653
|
They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.4e-08 Score=110.59 Aligned_cols=233 Identities=12% Similarity=0.117 Sum_probs=148.9
Q ss_pred CCCceEEEeecCCeEEEEeC---------CCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCE
Q 001380 601 KFPGKLAIDILNNRLFISDS---------NHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNL 670 (1089)
Q Consensus 601 ~~P~~vavd~~~g~L~vsd~---------~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~ 670 (1089)
..|.++ ++++++.|||+.+ ..+.|.++|.. ++.+..+..+..+-+ .....|..++++++|++
T Consensus 47 ~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~-------~~~~~~~~~~ls~dgk~ 118 (352)
T TIGR02658 47 FLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF-------LVGTYPWMTSLTPDNKT 118 (352)
T ss_pred CCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh-------hccCccceEEECCCCCE
Confidence 468886 9998899999999 88999999987 777777766533111 12457889999999999
Q ss_pred EEEEECC-CCEEEEEECCCCeEEEEecCCC--CCCCC---------CCCCccc------------cccc---------CC
Q 001380 671 LYVADTE-NHALREIDFVNDTVRTLAGNGT--KGSDY---------QGGEKGT------------SQLL---------NS 717 (1089)
Q Consensus 671 lyVaD~~-n~~I~~~d~~~g~v~~~ag~g~--~~~~~---------~~~~~~~------------~~~l---------~~ 717 (1089)
|||++.. .+.|-++|+.++++..-...+. ..+.. .++.... ..++ ..
T Consensus 119 l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~r 198 (352)
T TIGR02658 119 LLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINH 198 (352)
T ss_pred EEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccC
Confidence 9999966 8999999998876554222211 11100 0010000 0111 23
Q ss_pred ceeEEEec-CCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCce---EEEcCCCCEEEEEe--
Q 001380 718 PWDVCYKP-INEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSG---ISLSPDFMEIYVAD-- 791 (1089)
Q Consensus 718 P~~la~~~-~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~g---lav~~~g~~lyvad-- 791 (1089)
| .+.+ +|..+|++.. +.|..+|..+........-.. ...+.. ..--.|.| ++++++|+++||+.
T Consensus 199 P---~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~--~~~~~~---~~~wrP~g~q~ia~~~dg~~lyV~~~~ 268 (352)
T TIGR02658 199 P---AYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEA--FTEAEK---ADGWRPGGWQQVAYHRARDRIYLLADQ 268 (352)
T ss_pred C---ceEcCCCcEEEEecC--CeEEEEecCCCcceecceeee--cccccc---ccccCCCcceeEEEcCCCCEEEEEecC
Confidence 3 3344 6667777766 888888865443322110000 000000 00124555 99999999999953
Q ss_pred -------CCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc--EEEEeCCCCEEEE
Q 001380 792 -------SESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ--IYVADSYNHKIKK 862 (1089)
Q Consensus 792 -------~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~--lyVaD~~n~~I~~ 862 (1089)
...+.|..+|..++.+.....- -..|.+|++++||+ +|+++..++.|.+
T Consensus 269 ~~~~thk~~~~~V~ViD~~t~kvi~~i~v----------------------G~~~~~iavS~Dgkp~lyvtn~~s~~VsV 326 (352)
T TIGR02658 269 RAKWTHKTASRFLFVVDAKTGKRLRKIEL----------------------GHEIDSINVSQDAKPLLYALSTGDKTLYI 326 (352)
T ss_pred CccccccCCCCEEEEEECCCCeEEEEEeC----------------------CCceeeEEECCCCCeEEEEeCCCCCcEEE
Confidence 2236899999987765432110 12589999999985 8889888899999
Q ss_pred EeCCCCe-EEEE
Q 001380 863 LDPASNR-VSTL 873 (1089)
Q Consensus 863 ~d~~~~~-v~t~ 873 (1089)
+|..+++ +.++
T Consensus 327 iD~~t~k~i~~i 338 (352)
T TIGR02658 327 FDAETGKELSSV 338 (352)
T ss_pred EECcCCeEEeee
Confidence 9998774 4444
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.8e-10 Score=103.62 Aligned_cols=87 Identities=32% Similarity=0.497 Sum_probs=78.5
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.++++||.||++||++|+...|.|.++.+++++ ++.++.|.. +....++++|
T Consensus 16 ~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~---------------------------~~~~~l~~~~ 67 (103)
T PF00085_consen 16 SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDC---------------------------DENKELCKKY 67 (103)
T ss_dssp TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEET---------------------------TTSHHHHHHT
T ss_pred cCCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhh---------------------------hccchhhhcc
Confidence 369999999999999999999999999999987 788898854 4567899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEA 567 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~ 567 (1089)
+|.++|+++++ .+|+...++.|..+.+.|.++|++
T Consensus 68 ~v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 68 GVKSVPTIIFF-KNGKEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp TCSSSSEEEEE-ETTEEEEEEESSSSHHHHHHHHHH
T ss_pred CCCCCCEEEEE-ECCcEEEEEECCCCHHHHHHHHHc
Confidence 99999999999 788888899999999999998874
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A .... |
| >PRK11590 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.3e-09 Score=113.71 Aligned_cols=178 Identities=15% Similarity=0.071 Sum_probs=112.1
Q ss_pred ceEEEEecCCcccCCchHHHHHHHHHH-HHcCCCC-CHHhHhhhcCCCHHHHHHH-HHh--------hcCCCCCCHHHHH
Q 001380 79 VSAVLFDMDGVLCNSEEPSRRAAVDVF-AEMGVEV-TVEDFLPFMGTGEANFLGG-VAS--------VKGVKGFDSEAAK 147 (1089)
Q Consensus 79 ~k~ViFD~DGTL~d~~~~~~~a~~~~~-~~~g~~~-~~~~~~~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~~ 147 (1089)
.++++||+||||++ ..+...+...+ +++++.. ..+.+....+.+....... ... ..+. ..+..
T Consensus 6 ~k~~iFD~DGTL~~--~d~~~~~~~~~~~~~g~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~g~----~~~~~ 79 (211)
T PRK11590 6 RRVVFFDLDGTLHQ--QDMFGSFLRYLLRRQPLNLLLVLPLLPVIGLGLLVKGRAARWPMSLLLWGCTFGH----SEARL 79 (211)
T ss_pred ceEEEEecCCCCcc--cchHHHHHHHHHHhcchhhHHHhHHHHHhccCcccchhhhhhhHHHHHHHHHcCC----CHHHH
Confidence 47999999999993 34666676666 7888763 3355555666554332222 100 1122 22233
Q ss_pred HHHHHHHHHHhcCCCCCCCCccHHHHH-HHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCC-c---cC--
Q 001380 148 KRFFEIYLDKYAKPNSGIGFPGALELI-NQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADA-F---EN-- 220 (1089)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~pG~~~lL-~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~-~---~~-- 220 (1089)
+++.+.|.+.+... ..++||+.++| +.++++|++++|+||.....++.+++.+++. . .+.+++.+- . +.
T Consensus 80 ~~~~~~f~~~~~~~--~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~~~-~-~~~~i~t~l~~~~tg~~~ 155 (211)
T PRK11590 80 QALEADFVRWFRDN--VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTPWL-P-RVNLIASQMQRRYGGWVL 155 (211)
T ss_pred HHHHHHHHHHHHHh--CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcccc-c-cCceEEEEEEEEEccEEC
Confidence 33444443333322 25699999999 5789899999999999999999999999962 2 344444431 1 00
Q ss_pred CC-CC-HHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcC
Q 001380 221 LK-PA-PDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTT 267 (1089)
Q Consensus 221 ~K-P~-~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~ 267 (1089)
+. .. .+=..++-+.++.+..++.+.||+.+|+.+...+| +.+.|+.
T Consensus 156 g~~c~g~~K~~~l~~~~~~~~~~~~aY~Ds~~D~pmL~~a~-~~~~vnp 203 (211)
T PRK11590 156 TLRCLGHEKVAQLERKIGTPLRLYSGYSDSKQDNPLLYFCQ-HRWRVTP 203 (211)
T ss_pred CccCCChHHHHHHHHHhCCCcceEEEecCCcccHHHHHhCC-CCEEECc
Confidence 00 00 11122333444667788999999999999999999 5566755
|
|
| >cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related) | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.5e-10 Score=104.68 Aligned_cols=87 Identities=25% Similarity=0.422 Sum_probs=70.9
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCC-CCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD-MPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRE 530 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~-~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~ 530 (1089)
++++++|+||++||++|+++.|.++++.+++++ ..+.++.+.+. . +....+++.
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~-----~--------------------~~~~~~~~~ 70 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCT-----K--------------------PEHDALKEE 70 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECC-----C--------------------CccHHHHHh
Confidence 567999999999999999999999999999874 34677777431 0 225678999
Q ss_pred hCCCceeEEEEECCCCcEEEEecCCCchhhHHHH
Q 001380 531 LGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDL 564 (1089)
Q Consensus 531 ~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~ 564 (1089)
|+|.++|+++++ ++|+++.++.|....+.+.++
T Consensus 71 ~~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~ 103 (104)
T cd02997 71 YNVKGFPTFKYF-ENGKFVEKYEGERTAEDIIEF 103 (104)
T ss_pred CCCccccEEEEE-eCCCeeEEeCCCCCHHHHHhh
Confidence 999999998777 689988899998887777654
|
PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. |
| >TIGR01068 thioredoxin thioredoxin | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.1e-10 Score=103.04 Aligned_cols=87 Identities=29% Similarity=0.509 Sum_probs=75.2
Q ss_pred CCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhC
Q 001380 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELG 532 (1089)
Q Consensus 453 gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~ 532 (1089)
+++++|.||++||++|+++.|.|+++.+++.+ ++.++.|.. +.+..++++|+
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~---------------------------~~~~~~~~~~~ 65 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEG-KVKFVKLNV---------------------------DENPDIAAKYG 65 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEEC---------------------------CCCHHHHHHcC
Confidence 57999999999999999999999999988874 488888854 44567889999
Q ss_pred CCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 533 VNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 533 v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
|..+|+++++ ++|+++....|..+.+.+.++|++.
T Consensus 66 v~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 66 IRSIPTLLLF-KNGKEVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred CCcCCEEEEE-eCCcEeeeecCCCCHHHHHHHHHhh
Confidence 9999999999 7899988888988888888887654
|
Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. |
| >PTZ00443 Thioredoxin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.6e-10 Score=117.20 Aligned_cols=92 Identities=18% Similarity=0.355 Sum_probs=77.8
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+++++|+||++||++|+++.|.++++++++++. +.+..|.+ +.+..++++|
T Consensus 51 ~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~-v~~~~VD~---------------------------~~~~~l~~~~ 102 (224)
T PTZ00443 51 TTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ-VNVADLDA---------------------------TRALNLAKRF 102 (224)
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC-eEEEEecC---------------------------cccHHHHHHc
Confidence 3578999999999999999999999999999864 66666633 3456799999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHHh
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFY 572 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~~ 572 (1089)
+|.++|++++++ +|+++....|..+.+++.+++.+.++..
T Consensus 103 ~I~~~PTl~~f~-~G~~v~~~~G~~s~e~L~~fi~~~~~~~ 142 (224)
T PTZ00443 103 AIKGYPTLLLFD-KGKMYQYEGGDRSTEKLAAFALGDFKKA 142 (224)
T ss_pred CCCcCCEEEEEE-CCEEEEeeCCCCCHHHHHHHHHHHHHhh
Confidence 999999999996 8998888888889999999988877544
|
|
| >cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.5e-10 Score=110.13 Aligned_cols=75 Identities=20% Similarity=0.279 Sum_probs=66.1
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
+++++||+||++||++|+.+.|.++++++++++.++.++.|.+ |...+++++|
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDv---------------------------d~~~~la~~~ 98 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDI---------------------------GRFPNVAEKF 98 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEEC---------------------------CCCHHHHHHc
Confidence 4689999999999999999999999999999876799999965 4556788888
Q ss_pred CCCc------eeEEEEECCCCcEEEEecC
Q 001380 532 GVNS------WPTFAVVGPNGKLLAQLAG 554 (1089)
Q Consensus 532 ~v~~------~Pt~~lid~~G~i~~~~~G 554 (1089)
+|.. +||++++ ++|+.+.+..|
T Consensus 99 ~V~~~~~v~~~PT~ilf-~~Gk~v~r~~G 126 (152)
T cd02962 99 RVSTSPLSKQLPTIILF-QGGKEVARRPY 126 (152)
T ss_pred CceecCCcCCCCEEEEE-ECCEEEEEEec
Confidence 8877 9999999 69999999887
|
It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail. |
| >PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.8e-10 Score=112.49 Aligned_cols=124 Identities=21% Similarity=0.315 Sum_probs=97.3
Q ss_pred CCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcc-hhhhhhhHHHHHHHcCC--CCEEEEEEeCCCCCChhc
Q 001380 426 TTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCIN-CMHVLPDLEFLEKKYKD--MPFTVVGVHSAKFDNEKD 502 (1089)
Q Consensus 426 ~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~-C~~~~p~l~~l~~~~~~--~~v~vi~v~~~~~~~~~~ 502 (1089)
.....|+|++.. .+|+++++ ++++||++||+|..+-|+. |...+..|.++.+++.+ ..+.+|.||++ +..|+
T Consensus 28 ~~~~~~~f~L~d--~~G~~~~~-~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD--P~~DT 102 (174)
T PF02630_consen 28 NPRIVPDFTLTD--QDGKTVTL-DDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD--PERDT 102 (174)
T ss_dssp TSCSSST-EEEE--TTSSEEEG-GGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS--TTTC-
T ss_pred CCccCCCcEEEc--CCCCEecH-HHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC--CCCCC
Confidence 445678898654 49999999 9999999999999999987 99999999999988764 47999999985 34477
Q ss_pred HHHHHHHHHHcCCccceeecC---ChhHHHHhCCC----------------ceeEEEEECCCCcEEEEecC
Q 001380 503 LEAIRNAVLRYGISHPVVNDG---DMNLWRELGVN----------------SWPTFAVVGPNGKLLAQLAG 554 (1089)
Q Consensus 503 ~~~~~~~~~~~~~~~~v~~d~---~~~l~~~~~v~----------------~~Pt~~lid~~G~i~~~~~G 554 (1089)
++.+++|+++++..|..+... -.++++.|++. +...++||||+|+++..+.+
T Consensus 103 p~~L~~Y~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~~ 173 (174)
T PF02630_consen 103 PEVLKKYAKKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYNL 173 (174)
T ss_dssp HHHHHHHHHCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEECS
T ss_pred HHHHHHHHHhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEcc
Confidence 999999999999887665433 24577777753 33578999999999988764
|
In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A .... |
| >PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 [] | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.2e-09 Score=110.26 Aligned_cols=179 Identities=18% Similarity=0.184 Sum_probs=116.8
Q ss_pred EEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCC-CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhc
Q 001380 81 AVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGT-GEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDKYA 159 (1089)
Q Consensus 81 ~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (1089)
+|+||+|+||+|.... ..+++.++.+.-..++.+.... ....+...+.......+...++..+.+ .
T Consensus 2 LvvfDFD~TIvd~dsd-----~~v~~~l~~~~~~~~l~~~~~~~~wt~~m~~vl~~L~~~gvt~~~I~~~l--------~ 68 (234)
T PF06888_consen 2 LVVFDFDHTIVDQDSD-----DWVIELLPPEELPEELRESYPKGGWTEYMDRVLQLLHEQGVTPEDIRDAL--------R 68 (234)
T ss_pred EEEEeCCCCccCCccH-----HHHHHhcCCcccHHHHHHhccccchHHHHHHHHHHHHHcCCCHHHHHHHH--------H
Confidence 5899999999987632 2345555555433444433331 122333333332222222333222222 1
Q ss_pred CCCCCCCCccHHHHHHHH--HhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCC----cc--------------
Q 001380 160 KPNSGIGFPGALELINQC--KSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADA----FE-------------- 219 (1089)
Q Consensus 160 ~~~~~~~~pG~~~lL~~L--k~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~----~~-------------- 219 (1089)
..++.||+.++++.+ ++.|+.+.|+|+++.-.++.+|++.|+. ..|+.|++... .+
T Consensus 69 ---~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~-~~f~~I~TNpa~~~~~G~l~v~pyh~h~C~~ 144 (234)
T PF06888_consen 69 ---SIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLR-DCFSEIFTNPACFDADGRLRVRPYHSHGCSL 144 (234)
T ss_pred ---cCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCc-cccceEEeCCceecCCceEEEeCccCCCCCc
Confidence 127899999999999 4579999999999999999999999996 99988887621 11
Q ss_pred --CCCCCHHHHHHHHHH---cCCCCCcEEEEcCChhhHHHHHHcCC-eEEEEcCCCCHHHHhh
Q 001380 220 --NLKPAPDIFLSASKI---LNVPTSECIVIEDALAGVQAAKAAQM-RCIAVTTTLSEERLKE 276 (1089)
Q Consensus 220 --~~KP~~~~~~~~l~~---lgv~p~~~v~VGD~~~Di~aA~~aG~-~~i~V~~g~~~~~l~~ 276 (1089)
..--|..++++.++. -|+..++++||||+.+|+-.+.+.+- +.+....|.....+..
T Consensus 145 C~~NmCK~~il~~~~~~~~~~g~~~~rviYiGDG~nD~Cp~~~L~~~D~v~~R~~~~l~~~i~ 207 (234)
T PF06888_consen 145 CPPNMCKGKILERLLQEQAQRGVPYDRVIYIGDGRNDFCPALRLRPRDVVFPRKGYPLHKLIQ 207 (234)
T ss_pred CCCccchHHHHHHHHHHHhhcCCCcceEEEECCCCCCcCcccccCCCCEEecCCCChHHHHHh
Confidence 012355667777665 37788999999999999999998765 4555555654444433
|
It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity |
| >TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.4e-09 Score=115.58 Aligned_cols=103 Identities=17% Similarity=0.202 Sum_probs=85.4
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHC-C-------CCCCCccEEEEcCCcc-----------------
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAA-G-------LPVSMFDAIVSADAFE----------------- 219 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~-g-------l~~~~fd~i~~~~~~~----------------- 219 (1089)
...||+.++|+.|+++|++++|+||.....++.+++.+ | +. ++||.|+++..-.
T Consensus 184 ~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~-~yFD~IIt~a~KP~FF~~~~pf~~v~~~~g 262 (343)
T TIGR02244 184 LRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWR-DYFDVVIVDARKPGFFTEGRPFRQVDVETG 262 (343)
T ss_pred ccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchH-hhCcEEEeCCCCCcccCCCCceEEEeCCCC
Confidence 45899999999999999999999999999999999996 7 75 9999999875311
Q ss_pred CCCCCH------------HHHHHHHHHcCCCCCcEEEEcCCh-hhHHHHH-HcCCeEEEEcCC
Q 001380 220 NLKPAP------------DIFLSASKILNVPTSECIVIEDAL-AGVQAAK-AAQMRCIAVTTT 268 (1089)
Q Consensus 220 ~~KP~~------------~~~~~~l~~lgv~p~~~v~VGD~~-~Di~aA~-~aG~~~i~V~~g 268 (1089)
..++.. .-.....+.+|+++++++||||.+ +||.+++ .+||++++|..-
T Consensus 263 ~~~~~~~~~l~~g~vY~gGn~~~~~~~l~~~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI~pE 325 (343)
T TIGR02244 263 SLKWGEVDGLEPGKVYSGGSLKQFHELLKWRGKEVLYFGDHIYGDLLRSKKKRGWRTAAIIPE 325 (343)
T ss_pred cccCCccccccCCCeEeCCCHHHHHHHHCCCCCcEEEECCcchHHHHhhHHhcCcEEEEEchh
Confidence 111111 114677788899999999999999 9999998 999999999653
|
A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model. |
| >cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-09 Score=100.43 Aligned_cols=82 Identities=21% Similarity=0.389 Sum_probs=67.8
Q ss_pred CCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhC
Q 001380 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELG 532 (1089)
Q Consensus 453 gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~ 532 (1089)
+|+++|+||++||++|+.+.|.|.++.+++. ..+.++.+.. +...+++++|+
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~-~~i~~~~vd~---------------------------~~~~~~~~~~~ 65 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAF-PSVLFLSIEA---------------------------EELPEISEKFE 65 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhC-CceEEEEEcc---------------------------ccCHHHHHhcC
Confidence 7999999999999999999999999999973 3588888832 33567899999
Q ss_pred CCceeEEEEECCCCcEEEEecCCCchhhHHHH
Q 001380 533 VNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDL 564 (1089)
Q Consensus 533 v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~ 564 (1089)
+.++|+++++ .+|+++.++.|. ..+.+.+.
T Consensus 66 i~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~ 95 (97)
T cd02984 66 ITAVPTFVFF-RNGTIVDRVSGA-DPKELAKK 95 (97)
T ss_pred CccccEEEEE-ECCEEEEEEeCC-CHHHHHHh
Confidence 9999999999 589999998886 34445443
|
PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. |
| >cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5 | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.7e-10 Score=103.66 Aligned_cols=86 Identities=21% Similarity=0.410 Sum_probs=72.4
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCC-CCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecC-ChhHHH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD-MPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDG-DMNLWR 529 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~-~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~-~~~l~~ 529 (1089)
.+|+++|.||++||++|+.+.|.+.++.++++. .++.++.+.+ +. ...+++
T Consensus 17 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~---------------------------~~~~~~~~~ 69 (105)
T cd02998 17 DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDA---------------------------DEANKDLAK 69 (105)
T ss_pred CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEEC---------------------------CCcchhhHH
Confidence 357999999999999999999999999999873 4688888854 23 468899
Q ss_pred HhCCCceeEEEEECCCCcEEEEecCCCchhhHHHH
Q 001380 530 ELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDL 564 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~ 564 (1089)
+|+|.++|++++++++|+....+.|....+.+.++
T Consensus 70 ~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~ 104 (105)
T cd02998 70 KYGVSGFPTLKFFPKGSTEPVKYEGGRDLEDLVKF 104 (105)
T ss_pred hCCCCCcCEEEEEeCCCCCccccCCccCHHHHHhh
Confidence 99999999999998887777778888887777655
|
The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER |
| >PRK08238 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.4e-09 Score=121.14 Aligned_cols=98 Identities=22% Similarity=0.227 Sum_probs=84.2
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEE
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECI 243 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v 243 (1089)
.++.||+.+++++++++|++++|+|+..+..++.+++++|+ ||.++++++....||+++. ..+.+.++. ++++
T Consensus 71 lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl----Fd~Vigsd~~~~~kg~~K~-~~l~~~l~~--~~~~ 143 (479)
T PRK08238 71 LPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGL----FDGVFASDGTTNLKGAAKA-AALVEAFGE--RGFD 143 (479)
T ss_pred CCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC----CCEEEeCCCccccCCchHH-HHHHHHhCc--cCee
Confidence 35789999999999999999999999999999999999987 8899999988777776654 234456653 6689
Q ss_pred EEcCChhhHHHHHHcCCeEEEEcCCC
Q 001380 244 VIEDALAGVQAAKAAQMRCIAVTTTL 269 (1089)
Q Consensus 244 ~VGD~~~Di~aA~~aG~~~i~V~~g~ 269 (1089)
|+||+.+|+.+++.+| +.+.|+.+.
T Consensus 144 yvGDS~~Dlp~~~~A~-~av~Vn~~~ 168 (479)
T PRK08238 144 YAGNSAADLPVWAAAR-RAIVVGASP 168 (479)
T ss_pred EecCCHHHHHHHHhCC-CeEEECCCH
Confidence 9999999999999999 888898764
|
|
| >PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.3e-09 Score=105.38 Aligned_cols=93 Identities=27% Similarity=0.266 Sum_probs=71.3
Q ss_pred CCccHHHHHHHHHhCCC--eEEEEcCC-------ChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcC
Q 001380 166 GFPGALELINQCKSKGL--KVAVASSA-------DRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILN 236 (1089)
Q Consensus 166 ~~pG~~~lL~~Lk~~Gi--~vaIvSn~-------~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lg 236 (1089)
+.|.+.+.+++|++.+. .+.|+||+ ....++.+-+.+|++ .+... ..|| ..+..+++.++
T Consensus 60 i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIp-----vl~h~----~kKP--~~~~~i~~~~~ 128 (168)
T PF09419_consen 60 IPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIP-----VLRHR----AKKP--GCFREILKYFK 128 (168)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCc-----EEEeC----CCCC--ccHHHHHHHHh
Confidence 34555666777887765 49999997 367788888899986 22211 3466 56667777765
Q ss_pred C-----CCCcEEEEcCCh-hhHHHHHHcCCeEEEEcCCC
Q 001380 237 V-----PTSECIVIEDAL-AGVQAAKAAQMRCIAVTTTL 269 (1089)
Q Consensus 237 v-----~p~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~ 269 (1089)
. .|+|++||||.+ +||.+|...|+.+|||..|+
T Consensus 129 ~~~~~~~p~eiavIGDrl~TDVl~gN~~G~~tilv~~gv 167 (168)
T PF09419_consen 129 CQKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTILVTDGV 167 (168)
T ss_pred hccCCCCchhEEEEcchHHHHHHHhhccCceEEEEecCc
Confidence 4 499999999999 99999999999999998875
|
All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family. |
| >TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544 | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.2e-08 Score=106.60 Aligned_cols=121 Identities=16% Similarity=0.153 Sum_probs=93.6
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEE------EEcCCccCCCCCH---------HHH
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAI------VSADAFENLKPAP---------DIF 228 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i------~~~~~~~~~KP~~---------~~~ 228 (1089)
..+.||+.++++.|+++|++++|+|++....++..++++|+. ..+..+ +..+....++|.| .++
T Consensus 120 l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~-~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v~ 198 (277)
T TIGR01544 120 VMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVY-HPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDVA 198 (277)
T ss_pred CccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCC-CcCceEEeeeEEECCCCeEeCCCCCcccccccHHHHH
Confidence 478999999999999999999999999999999999999995 666667 4445555678877 677
Q ss_pred HHHHHHcC--CCCCcEEEEcCChhhHHHHHHc-C---CeEEEEcCCCCHHHHhhc--CCcEEecC
Q 001380 229 LSASKILN--VPTSECIVIEDALAGVQAAKAA-Q---MRCIAVTTTLSEERLKEA--SPSLIRKE 285 (1089)
Q Consensus 229 ~~~l~~lg--v~p~~~v~VGD~~~Di~aA~~a-G---~~~i~V~~g~~~~~l~~~--~~d~vi~d 285 (1089)
+.+++.++ ..+++||+|||+.+|+.||.-. . +-.|+++...-.+.+.+. .-|.|+-+
T Consensus 199 ~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~~~~~~~l~igfln~~~e~~l~~y~~~~Divl~~ 263 (277)
T TIGR01544 199 LRNTEYFNQLKDRSNIILLGDSQGDLRMADGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLVQ 263 (277)
T ss_pred HHHHHHhCccCCcceEEEECcChhhhhHhcCCCcccceEEEEecccCHHHHHHHHHHhCCEEEEC
Confidence 78899998 7899999999999999998766 2 345666655433333332 34544433
|
This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB. |
| >PTZ00051 thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.7e-09 Score=99.67 Aligned_cols=80 Identities=28% Similarity=0.486 Sum_probs=66.5
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+++++|+||++||++|+.+.|.|.++++++.+ +.++.|.. +....++++|
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~vd~---------------------------~~~~~~~~~~ 67 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK--MVFVKVDV---------------------------DELSEVAEKE 67 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC--cEEEEEEC---------------------------cchHHHHHHC
Confidence 468999999999999999999999999998763 67777743 3446799999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLD 562 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~ 562 (1089)
+|.++|+++++ ++|+++.++.|. ..+++.
T Consensus 68 ~v~~~Pt~~~~-~~g~~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 68 NITSMPTFKVF-KNGSVVDTLLGA-NDEALK 96 (98)
T ss_pred CCceeeEEEEE-eCCeEEEEEeCC-CHHHhh
Confidence 99999998777 899999999986 445443
|
|
| >KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.1e-10 Score=109.57 Aligned_cols=74 Identities=32% Similarity=0.384 Sum_probs=63.6
Q ss_pred CCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCCh-hhHHHHHHcCCeEEEEcCCC-C--HHHHhhcCCcEEecCcccC
Q 001380 216 DAFENLKPAPDIFLSASKILNVPTSECIVIEDAL-AGVQAAKAAQMRCIAVTTTL-S--EERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 216 ~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~-~--~~~l~~~~~d~vi~dl~el 289 (1089)
+....+||++..|+.+++.+|++|++++||||.. .|+.+|++.||+.|.|.+|. . .++-....|+.+.++|.+-
T Consensus 175 ~a~vvGKP~~~fFe~al~~~gv~p~~aVMIGDD~~dDvgGAq~~GMrgilVkTGK~rpsDe~k~~~~p~~~~d~f~~A 252 (262)
T KOG3040|consen 175 EATVVGKPSPFFFESALQALGVDPEEAVMIGDDLNDDVGGAQACGMRGILVKTGKFRPSDEEKPPVPPDLTADNFADA 252 (262)
T ss_pred eEEEecCCCHHHHHHHHHhcCCChHHheEEccccccchhhHhhhcceeEEeeccccCCcccccCCCCcchhhhhHHHH
Confidence 3345699999999999999999999999999999 89999999999999999986 2 2444445788888888876
|
|
| >cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.9e-10 Score=104.81 Aligned_cols=93 Identities=16% Similarity=0.224 Sum_probs=64.9
Q ss_pred cccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCC-CCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhH
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD-MPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNL 527 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~-~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l 527 (1089)
+..++|+|||+|||+||++|+.+.|.+.+..+.+.. .++..|.+.. + ....
T Consensus 15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~---------------------------~-~~~~ 66 (117)
T cd02959 15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLED---------------------------D-EEPK 66 (117)
T ss_pred HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecC---------------------------C-CCch
Confidence 445789999999999999999999999997765432 3455555521 1 1123
Q ss_pred HHHhCCCc--eeEEEEECCCCcEEEE---ecCCCchhhHHHHHHHHH
Q 001380 528 WRELGVNS--WPTFAVVGPNGKLLAQ---LAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 528 ~~~~~v~~--~Pt~~lid~~G~i~~~---~~G~~~~~~l~~~l~~~l 569 (1089)
.+.|++.+ +|+++++|++|+++.+ ..|....+.+...|+.+.
T Consensus 67 ~~~~~~~g~~vPt~~f~~~~Gk~~~~~~~~~~~~~~~~f~~~~~~~~ 113 (117)
T cd02959 67 DEEFSPDGGYIPRILFLDPSGDVHPEIINKKGNPNYKYFYSSAAQVT 113 (117)
T ss_pred hhhcccCCCccceEEEECCCCCCchhhccCCCCccccccCCCHHHHH
Confidence 45677765 9999999999999875 445445555555555444
|
Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney. |
| >cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.6e-09 Score=99.37 Aligned_cols=85 Identities=22% Similarity=0.389 Sum_probs=70.0
Q ss_pred CCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhC
Q 001380 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELG 532 (1089)
Q Consensus 453 gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~ 532 (1089)
+++++|.||++||++|+...|.+.+++++++.. +.++.+.. +.+.+++++|+
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~-~~~~~id~---------------------------~~~~~~~~~~~ 69 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI-VKVGAVDA---------------------------DVHQSLAQQYG 69 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-ceEEEEEC---------------------------cchHHHHHHCC
Confidence 567999999999999999999999999998753 77777743 44568899999
Q ss_pred CCceeEEEEECCCCcEEEEecCCCchhhHHHHH
Q 001380 533 VNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLV 565 (1089)
Q Consensus 533 v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l 565 (1089)
|.++|++++++++.+....+.|..+.+.+.+++
T Consensus 70 i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 70 VRGFPTIKVFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CCccCEEEEECCCCcceeecCCCCCHHHHHHHh
Confidence 999999999965545566788888888776654
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. |
| >KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4e-09 Score=101.09 Aligned_cols=123 Identities=20% Similarity=0.327 Sum_probs=100.4
Q ss_pred CCCCCCCCCCccccCCCCCc--eeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCCh
Q 001380 424 RKTTPIVPEFPAKLDWLNTA--PLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNE 500 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~--~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~ 500 (1089)
..+.+++|+|+.+. -++|. .++| ++++||+|++.|| ..+.--|..|+-.+.+.+++|++.+.+||++|+ +..
T Consensus 4 ~~~~~p~p~fk~~a-VVdG~f~e~~L-~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~---DS~ 78 (196)
T KOG0852|consen 4 EVVFKPAPDFKGTA-VVDGEFKEIKL-SDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGIST---DSV 78 (196)
T ss_pred cccCCCCCCcceeE-EEcCcceEEee-hhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEec---cch
Confidence 34567779998652 34675 7889 9999999999999 456667999999999999999999999999998 445
Q ss_pred hcHHHHHHHHHHcC----CccceeecCChhHHHHhCCC------ceeEEEEECCCCcEEEE
Q 001380 501 KDLEAIRNAVLRYG----ISHPVVNDGDMNLWRELGVN------SWPTFAVVGPNGKLLAQ 551 (1089)
Q Consensus 501 ~~~~~~~~~~~~~~----~~~~v~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~ 551 (1089)
.+.-+|.+.-++.| +++|++.|.+.+++++|||. .+..+|+||++|.++..
T Consensus 79 fshlAW~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~i 139 (196)
T KOG0852|consen 79 FSHLAWINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQI 139 (196)
T ss_pred hhhhhHhcCchhhCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEe
Confidence 55666666655543 45999999999999999983 46789999999999875
|
|
| >cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-09 Score=100.86 Aligned_cols=86 Identities=26% Similarity=0.429 Sum_probs=72.3
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcC-CCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYK-DMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRE 530 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~-~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~ 530 (1089)
+++++||.||++||++|+...|.++++.+.++ ..++.++.|.. +.+..+++.
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~---------------------------~~~~~~~~~ 66 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDC---------------------------TANNDLCSE 66 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeec---------------------------cchHHHHHh
Confidence 45699999999999999999999999999985 44688888843 345789999
Q ss_pred hCCCceeEEEEECCCCcEEEEecCCCchhhHHHH
Q 001380 531 LGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDL 564 (1089)
Q Consensus 531 ~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~ 564 (1089)
|+|..+|++++++++|+...++.|..+.+.+.++
T Consensus 67 ~~i~~~Pt~~~~~~~~~~~~~~~g~~~~~~i~~~ 100 (101)
T cd02961 67 YGVRGYPTIKLFPNGSKEPVKYEGPRTLESLVEF 100 (101)
T ss_pred CCCCCCCEEEEEcCCCcccccCCCCcCHHHHHhh
Confidence 9999999999998887777888888777766554
|
Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies |
| >COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.5e-09 Score=107.77 Aligned_cols=134 Identities=18% Similarity=0.230 Sum_probs=107.2
Q ss_pred CCccccCCCCCceeecccccCCCEEEEEEecCCCcc-hhhhhhhHHHHHHHcC---CCCEEEEEEeCCCCCChhcHHHHH
Q 001380 432 EFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCIN-CMHVLPDLEFLEKKYK---DMPFTVVGVHSAKFDNEKDLEAIR 507 (1089)
Q Consensus 432 ~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~-C~~~~p~l~~l~~~~~---~~~v~vi~v~~~~~~~~~~~~~~~ 507 (1089)
+|+++ +.+|+.+++ .+++||++||+|..+.||. |..++..|.++.++.. ..++.++.|+++ +..|+++.++
T Consensus 49 ~f~l~--d~~G~~~~~-~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvD--PerDtp~~lk 123 (207)
T COG1999 49 DFELT--DQDGKPFTL-KDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVD--PERDTPEVLK 123 (207)
T ss_pred ceeee--cCCCCEeec-cccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEEC--CCCCCHHHHH
Confidence 67755 449999999 9999999999999999998 9999999999999987 357889999886 4456788889
Q ss_pred HHHH-HcCCccceeec---CChhHHHHhCCCc---------------eeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 508 NAVL-RYGISHPVVND---GDMNLWRELGVNS---------------WPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 508 ~~~~-~~~~~~~v~~d---~~~~l~~~~~v~~---------------~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
+++. ...-.|.-+.. ...+++++|+|.. ...+|+||++|+++..+.+...++.+.+.|+.+
T Consensus 124 ~Y~~~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l 203 (207)
T COG1999 124 KYAELNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKL 203 (207)
T ss_pred HHhcccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHH
Confidence 9988 44444554443 3456788887752 346899999999999988777788888888777
Q ss_pred HH
Q 001380 569 LL 570 (1089)
Q Consensus 569 l~ 570 (1089)
++
T Consensus 204 ~~ 205 (207)
T COG1999 204 LK 205 (207)
T ss_pred hh
Confidence 65
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.8e-07 Score=107.40 Aligned_cols=203 Identities=18% Similarity=0.252 Sum_probs=135.9
Q ss_pred CCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCe
Q 001380 612 NNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDT 690 (1089)
Q Consensus 612 ~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~ 690 (1089)
.+-+||++.+.++|.++|.+ .+.+.+|..++. -+.++++.++|+++||++. ++.|.++|+.+++
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~--------------~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~ 69 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGA--------------PHAGLKFSPDGRYLYVANR-DGTVSVIDLATGK 69 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STT--------------EEEEEE-TT-SSEEEEEET-TSEEEEEETTSSS
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCC--------------ceeEEEecCCCCEEEEEcC-CCeEEEEECCccc
Confidence 45567999999999999987 677888876521 2456788999999999985 5799999998866
Q ss_pred EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEE-EEeCCCccccCCCCCCCC
Q 001380 691 VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTR-AFSGDGYERNLNGSSSLN 769 (1089)
Q Consensus 691 v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~-~~~g~g~~~~~~g~~~~~ 769 (1089)
+..-...| ..|.+++++++|+++|+++...+++..+|.++.+.. .+...+... .
T Consensus 70 ~v~~i~~G-----------------~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~--------~ 124 (369)
T PF02239_consen 70 VVATIKVG-----------------GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPV--------D 124 (369)
T ss_dssp EEEEEE-S-----------------SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-T--------T
T ss_pred EEEEEecC-----------------CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccc--------c
Confidence 44333333 279999999999999999999999999998876544 333211100 0
Q ss_pred ccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeE---EEecCCCCCCCCccccCCCCCccccccccCceEEEEcc
Q 001380 770 TSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR---LLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAK 846 (1089)
Q Consensus 770 ~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~---~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~ 846 (1089)
..-..+.+|..++.....+++-.+++.|..++..+.... .+.. -..|.+..+|+
T Consensus 125 ~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~-----------------------g~~~~D~~~dp 181 (369)
T PF02239_consen 125 GPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV-----------------------GRFPHDGGFDP 181 (369)
T ss_dssp TS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE-------------------------TTEEEEEE-T
T ss_pred ccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc-----------------------cccccccccCc
Confidence 011234577777776556667778899999987643211 1111 13688999999
Q ss_pred CCc-EEEEeCCCCEEEEEeCCCCeEEEEeccC
Q 001380 847 NGQ-IYVADSYNHKIKKLDPASNRVSTLAGIG 877 (1089)
Q Consensus 847 ~G~-lyVaD~~n~~I~~~d~~~~~v~t~~g~g 877 (1089)
+|+ ++++....++|.++|..++.+......|
T Consensus 182 dgry~~va~~~sn~i~viD~~~~k~v~~i~~g 213 (369)
T PF02239_consen 182 DGRYFLVAANGSNKIAVIDTKTGKLVALIDTG 213 (369)
T ss_dssp TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-S
T ss_pred ccceeeecccccceeEEEeeccceEEEEeecc
Confidence 996 6787888889999999988776665543
|
... |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.3e-07 Score=99.25 Aligned_cols=215 Identities=17% Similarity=0.268 Sum_probs=125.3
Q ss_pred CCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC
Q 001380 657 NRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG 736 (1089)
Q Consensus 657 ~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~ 736 (1089)
..+.||+++|+.+.||....+...|..+++++..++++.-.| +..+-||++-.++ .+.+++..
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g----------------~~D~EgI~y~g~~-~~vl~~Er 84 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDG----------------FGDYEGITYLGNG-RYVLSEER 84 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-----------------SSEEEEEE-STT-EEEEEETT
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCC----------------CCCceeEEEECCC-EEEEEEcC
Confidence 468999999998889988888899999999888787776433 2378899997554 88888888
Q ss_pred CcEEEEEECCC--CeE-----EEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCC-eEEEEEcCC--CC
Q 001380 737 QHQIWEHSTVD--GVT-----RAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESS-SIRALNLKT--GG 806 (1089)
Q Consensus 737 ~~~I~~~~~~~--g~~-----~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~-~I~~~~~~~--~~ 806 (1089)
.+++..+.... ..+ ..+. .+... ..+. .--|||+|+.+++||++-...- .|+.++... ..
T Consensus 85 ~~~L~~~~~~~~~~~~~~~~~~~~~-l~~~~------~~N~---G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~ 154 (248)
T PF06977_consen 85 DQRLYIFTIDDDTTSLDRADVQKIS-LGFPN------KGNK---GFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFD 154 (248)
T ss_dssp TTEEEEEEE----TT--EEEEEEEE----S---------SS-----EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS-
T ss_pred CCcEEEEEEeccccccchhhceEEe-ccccc------CCCc---ceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccc
Confidence 88888777622 221 1121 01000 0011 2359999999889999854322 455555411 11
Q ss_pred eEEEecCCCCCCCCccccCCCCCccccccccCceEEEEcc-CCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCc
Q 001380 807 SRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAK-NGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGA 885 (1089)
Q Consensus 807 ~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~-~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~ 885 (1089)
...... .+-......+..|.++++++ .|++||-...+++|..+|.+++.+..+.-.... .
T Consensus 155 ~~~~~~--------------~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~-----~ 215 (248)
T PF06977_consen 155 LFVSDD--------------QDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGF-----H 215 (248)
T ss_dssp -EEEE---------------HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTG-----G
T ss_pred eeeccc--------------cccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcc-----c
Confidence 111100 00001223355699999997 479999999999999999887777766532110 0
Q ss_pred ccccccCCCceEEEccCCcEEEEECCCCEEEEE
Q 001380 886 ALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYL 918 (1089)
Q Consensus 886 ~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~ 918 (1089)
+....+..|.|||+|++|+|||+.-- |+..+|
T Consensus 216 gl~~~~~QpEGIa~d~~G~LYIvsEp-Nlfy~f 247 (248)
T PF06977_consen 216 GLSKDIPQPEGIAFDPDGNLYIVSEP-NLFYRF 247 (248)
T ss_dssp G-SS---SEEEEEE-TT--EEEEETT-TEEEEE
T ss_pred CcccccCCccEEEECCCCCEEEEcCC-ceEEEe
Confidence 22346788999999999999999864 466655
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.5e-09 Score=98.79 Aligned_cols=96 Identities=19% Similarity=0.261 Sum_probs=69.6
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCC--ChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFD--NEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
.|+.++|+|+++|||+|+...|.|.++.++.+ +.++-|+++... ...+.+++.++.+++++.
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~---~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~------------- 85 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQTK---APIYYIDSENNGSFEMSSLNDLTAFRSRFGIP------------- 85 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHhcC---CcEEEEECCCccCcCcccHHHHHHHHHHcCCc-------------
Confidence 46789999999999999999999999999832 445666543111 112233556666655542
Q ss_pred HhCCCceeEEEEECCCCcEEEEecCC-CchhhHHHHH
Q 001380 530 ELGVNSWPTFAVVGPNGKLLAQLAGE-GHRKDLDDLV 565 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i~~~~~G~-~~~~~l~~~l 565 (1089)
++|.++||++++ ++|+.+.++.|. .+.+++++++
T Consensus 86 -~~i~~~PT~v~~-k~Gk~v~~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 86 -TSFMGTPTFVHI-TDGKQVSVRCGSSTTAQELQDIA 120 (122)
T ss_pred -ccCCCCCEEEEE-eCCeEEEEEeCCCCCHHHHHHHh
Confidence 367889999999 899999999884 4577776664
|
This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris. |
| >COG4229 Predicted enolase-phosphatase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.4e-08 Score=96.31 Aligned_cols=185 Identities=17% Similarity=0.238 Sum_probs=118.5
Q ss_pred CceEEEEecCCcccCCch---H----HHHHHHHHHHHcCCCCC----HHhHhhhcCCCH--HHHHHHHHhhcCCCCCCHH
Q 001380 78 KVSAVLFDMDGVLCNSEE---P----SRRAAVDVFAEMGVEVT----VEDFLPFMGTGE--ANFLGGVASVKGVKGFDSE 144 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~---~----~~~a~~~~~~~~g~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 144 (1089)
|.++++.|+.||+..-.- . ..+.+.+..++.--+.. .+++....+... +.....+.....-+ ..+
T Consensus 3 m~kaiLlDIEGTv~~iSFVkdvlFPYa~~~lp~fv~e~~e~~~v~~~v~~v~~e~g~~~s~E~lva~~~~wiaed--~K~ 80 (229)
T COG4229 3 MVKAILLDIEGTVSPISFVKDVLFPYAARKLPDFVRENTEDSEVKKIVDEVLSEFGIANSEEALVALLLEWIAED--SKD 80 (229)
T ss_pred chhhheeeccccccchhHHHhhhhHHHHHHhHHHHHhhccCChhhHHHHHHHHHhCccchHHHHHHHHHHHHhcc--ccc
Confidence 468999999999985331 1 12223333333222111 234444444432 22222222222111 122
Q ss_pred HHHHHHHH-HHHHHhcC-CCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHC---CCCCCCccEEEEcCCcc
Q 001380 145 AAKKRFFE-IYLDKYAK-PNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAA---GLPVSMFDAIVSADAFE 219 (1089)
Q Consensus 145 ~~~~~~~~-~~~~~~~~-~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~---gl~~~~fd~i~~~~~~~ 219 (1089)
...++++- ++..-|.. ....+++|++.+.|++.++.|++++|.|+++....+-..... .+ ..+|+..+... .
T Consensus 81 t~lK~lQG~iWa~Gy~sgelkahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~Fghs~agdL-~~lfsGyfDtt-i- 157 (229)
T COG4229 81 TPLKALQGMIWAHGYESGELKAHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFFGHSDAGDL-NSLFSGYFDTT-I- 157 (229)
T ss_pred chHHHHHhHHHHhccccCccccccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhhcccccccH-Hhhhcceeecc-c-
Confidence 22233333 23222322 225689999999999999999999999999887766665543 33 25666665542 2
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcC
Q 001380 220 NLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTT 267 (1089)
Q Consensus 220 ~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~ 267 (1089)
-.|-...-|.++++..|++|.+++|+.|....+.+|+.+||+++++.+
T Consensus 158 G~KrE~~SY~kIa~~iGl~p~eilFLSDn~~EL~AA~~vGl~t~l~~R 205 (229)
T COG4229 158 GKKRESQSYAKIAGDIGLPPAEILFLSDNPEELKAAAGVGLATGLAVR 205 (229)
T ss_pred cccccchhHHHHHHhcCCCchheEEecCCHHHHHHHHhcchheeeeec
Confidence 357778899999999999999999999999999999999999999876
|
|
| >cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.1e-09 Score=101.67 Aligned_cols=72 Identities=28% Similarity=0.416 Sum_probs=62.1
Q ss_pred CCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhC
Q 001380 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELG 532 (1089)
Q Consensus 453 gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~ 532 (1089)
++++||+||++||++|+.+.|.|++++++|.+ +.++-|.. +.. .++++|+
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~--v~f~~vd~---------------------------~~~-~l~~~~~ 73 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYPE--TKFVKINA---------------------------EKA-FLVNYLD 73 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC--cEEEEEEc---------------------------hhh-HHHHhcC
Confidence 58999999999999999999999999999874 56666632 333 8899999
Q ss_pred CCceeEEEEECCCCcEEEEecCC
Q 001380 533 VNSWPTFAVVGPNGKLLAQLAGE 555 (1089)
Q Consensus 533 v~~~Pt~~lid~~G~i~~~~~G~ 555 (1089)
|.++|+++++ ++|+.+.+..|.
T Consensus 74 i~~~Pt~~~f-~~G~~v~~~~G~ 95 (113)
T cd02957 74 IKVLPTLLVY-KNGELIDNIVGF 95 (113)
T ss_pred CCcCCEEEEE-ECCEEEEEEecH
Confidence 9999999999 899999998874
|
Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te |
| >PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.6e-08 Score=112.23 Aligned_cols=127 Identities=11% Similarity=0.084 Sum_probs=86.1
Q ss_pred CCccHHHHHHHHHhCCCeEEEEcCCC-----hHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCC
Q 001380 166 GFPGALELINQCKSKGLKVAVASSAD-----RIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTS 240 (1089)
Q Consensus 166 ~~pG~~~lL~~Lk~~Gi~vaIvSn~~-----~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~ 240 (1089)
.++++.++++.++..+..+.++++.. ....+.+.+.+++. ......-.-+-...+..|+..++.+++++|++++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~ei~~~~~~K~~~l~~l~~~~gi~~~ 216 (272)
T PRK10530 138 TFTQVDSLAQAARQVNAIWKFALTHEDLPQLQHFAKHVEHELGLE-CEWSWHDQVDIARKGNSKGKRLTQWVEAQGWSMK 216 (272)
T ss_pred ceEEcccHHHHHhhcCCcEEEEEecCCHHHHHHHHHHHhhhcCce-EEEecCceEEEecCCCChHHHHHHHHHHcCCCHH
Confidence 35677788888877777777777643 12333444444542 1000000012223344577899999999999999
Q ss_pred cEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhc
Q 001380 241 ECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTG 297 (1089)
Q Consensus 241 ~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~ 297 (1089)
++++|||+.||+.|++.+|+ +|.+|...++++ ..|++++.+-.+=.+..+|..
T Consensus 217 e~i~~GD~~NDi~m~~~ag~---~vamgna~~~lk-~~Ad~v~~~n~~dGv~~~l~~ 269 (272)
T PRK10530 217 NVVAFGDNFNDISMLEAAGL---GVAMGNADDAVK-ARADLVIGDNTTPSIAEFIYS 269 (272)
T ss_pred HeEEeCCChhhHHHHHhcCc---eEEecCchHHHH-HhCCEEEecCCCCcHHHHHHH
Confidence 99999999999999999995 555666566764 579999988877766666643
|
|
| >cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.8e-09 Score=98.42 Aligned_cols=89 Identities=19% Similarity=0.100 Sum_probs=70.0
Q ss_pred CCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhC
Q 001380 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELG 532 (1089)
Q Consensus 453 gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~ 532 (1089)
++.++|+||++||++|+.+.|.|.++.+++. .+.++-|.. |...++++.|+
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~--~i~~~~vd~---------------------------d~~~~l~~~~~ 72 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELSD--KLKLEIYDF---------------------------DEDKEKAEKYG 72 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhcC--ceEEEEEeC---------------------------CcCHHHHHHcC
Confidence 4568899999999999999999999998873 366666643 44568999999
Q ss_pred CCceeEEEEECCCCcEE-EEecCCCchhhHHHHHHHHHH
Q 001380 533 VNSWPTFAVVGPNGKLL-AQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 533 v~~~Pt~~lid~~G~i~-~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
|.++|++++++.+++.- .++.|....+++.++|..++.
T Consensus 73 v~~vPt~~i~~~g~~~~~~~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 73 VERVPTTIFLQDGGKDGGIRYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred CCcCCEEEEEeCCeecceEEEEecCchHHHHHHHHHHHh
Confidence 99999999996433221 157788888899999888764
|
PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions. |
| >PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.8e-09 Score=105.52 Aligned_cols=108 Identities=18% Similarity=0.281 Sum_probs=76.8
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcC-CChHhHHHHHHHCCCC---------CCCccEEEEcCCccCCCCCHHHHHHHHH
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASS-ADRIKVDANLAAAGLP---------VSMFDAIVSADAFENLKPAPDIFLSASK 233 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn-~~~~~~~~~l~~~gl~---------~~~fd~i~~~~~~~~~KP~~~~~~~~l~ 233 (1089)
..++|++.+.|+.|+++|++++++|. ..++.++.+|+.+++. .++|+..- ..++ .|...|+.+.+
T Consensus 44 v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~e----I~~g-sK~~Hf~~i~~ 118 (169)
T PF12689_consen 44 VSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLE----IYPG-SKTTHFRRIHR 118 (169)
T ss_dssp E---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEE----ESSS--HHHHHHHHHH
T ss_pred EEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhh----eecC-chHHHHHHHHH
Confidence 37899999999999999999999996 4678999999999994 14555422 3333 77899999999
Q ss_pred HcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhh
Q 001380 234 ILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKE 276 (1089)
Q Consensus 234 ~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~ 276 (1089)
+.|++.++++++.|...++....+.|+.|+.|..|.+.+.+.+
T Consensus 119 ~tgI~y~eMlFFDDe~~N~~~v~~lGV~~v~v~~Glt~~~~~~ 161 (169)
T PF12689_consen 119 KTGIPYEEMLFFDDESRNIEVVSKLGVTCVLVPDGLTWDEFER 161 (169)
T ss_dssp HH---GGGEEEEES-HHHHHHHHTTT-EEEE-SSS--HHHHHH
T ss_pred hcCCChhHEEEecCchhcceeeEecCcEEEEeCCCCCHHHHHH
Confidence 9999999999999999999999999999999999988777654
|
The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.2e-06 Score=92.73 Aligned_cols=237 Identities=16% Similarity=0.117 Sum_probs=144.6
Q ss_pred CCCCCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCC-----CCE---EEEEecCCCCCCCCCCCCccccCCcceeEEee
Q 001380 595 LFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLD-----GNF---IVQIGSSGEEGLRDGSFDDATFNRPQGLAYNA 666 (1089)
Q Consensus 595 ~~~~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-----g~~---~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~ 666 (1089)
.....|..|+||++.| .+.+||+|.+++....++.+ |.. +.+|...+. ...-..|.|+++..
T Consensus 17 ~tDp~L~N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~---------~~~~~~PTGiVfN~ 86 (336)
T TIGR03118 17 IVDPGLRNAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPP---------LAAEGTPTGQVFNG 86 (336)
T ss_pred ccCccccccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCC---------CCCCCCccEEEEeC
Confidence 4456899999999998 88999999999999999876 332 334443211 01123689999975
Q ss_pred CCCEEEEEECCCC--EEEEEECCCCeEEEEecCCCCC---CCCCCCCcccccccCCceeEEEecC--CCEEEEEECCCcE
Q 001380 667 KKNLLYVADTENH--ALREIDFVNDTVRTLAGNGTKG---SDYQGGEKGTSQLLNSPWDVCYKPI--NEKVYIAMAGQHQ 739 (1089)
Q Consensus 667 ~g~~lyVaD~~n~--~I~~~d~~~g~v~~~ag~g~~~---~~~~~~~~~~~~~l~~P~~la~~~~--g~~lyvad~~~~~ 739 (1089)
... .-|+..+.. ....+-.++|++.-+...-... ....- ......-.-=.|+|+... ++.||.+|..+++
T Consensus 87 ~~~-F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~--~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~ 163 (336)
T TIGR03118 87 SDT-FVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIV--VDASQQGNVYKGLAVGPTGGGDYLYAANFRQGR 163 (336)
T ss_pred CCc-eEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEE--EccCCCcceeeeeEEeecCCCceEEEeccCCCc
Confidence 444 333332211 2234555566666665321110 00000 000000012246777643 5799999999999
Q ss_pred EEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEe-------------CCCCeEEEEEcCCCC
Q 001380 740 IWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVAD-------------SESSSIRALNLKTGG 806 (1089)
Q Consensus 740 I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad-------------~~~~~I~~~~~~~~~ 806 (1089)
|-+||..-..+. ..+. .. + +...+.+ -|.+|..-. ++|||+- .+.+.|-+|++++..
T Consensus 164 IDVFd~~f~~~~-~~g~--F~--D--P~iPagy-APFnIqnig--~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l 233 (336)
T TIGR03118 164 IDVFKGSFRPPP-LPGS--FI--D--PALPAGY-APFNVQNLG--GTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQL 233 (336)
T ss_pred eEEecCcccccc-CCCC--cc--C--CCCCCCC-CCcceEEEC--CeEEEEEEecCCcccccccCCCcceEEEEcCCCcE
Confidence 999985543332 1221 11 1 1122333 477887553 4899864 234578888888777
Q ss_pred eEEEecCCCCCCCCccccCCCCCccccccccCceEEEEcc------CCcEEEEeCCCCEEEEEeCCC-CeEEEEe
Q 001380 807 SRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAK------NGQIYVADSYNHKIKKLDPAS-NRVSTLA 874 (1089)
Q Consensus 807 ~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~------~G~lyVaD~~n~~I~~~d~~~-~~v~t~~ 874 (1089)
++.++.+ ..|+.|+||++.| .|.|+|.+.+.++|..||+.+ ..+-.+.
T Consensus 234 ~~r~as~--------------------g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 234 LRRVASS--------------------GRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred EEEeccC--------------------CcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence 7666433 2389999999976 578999999999999999974 4454444
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.2e-06 Score=101.28 Aligned_cols=180 Identities=18% Similarity=0.282 Sum_probs=105.4
Q ss_pred CCCCCCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeC------
Q 001380 594 RLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAK------ 667 (1089)
Q Consensus 594 ~~~~~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~------ 667 (1089)
+.+++.|.+|++|++.+ +|+|||+....++|++++.++.....+... ... ........+.||+++|+
T Consensus 23 ~~va~GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l--~~v----~~~~ge~GLlglal~PdF~~~~~ 95 (454)
T TIGR03606 23 KVLLSGLNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTL--PEI----VNDAQHNGLLGLALHPDFMQEKG 95 (454)
T ss_pred EEEECCCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecC--Cce----eccCCCCceeeEEECCCccccCC
Confidence 35678999999999998 889999998789999998764332222111 000 00011346799999965
Q ss_pred CCEEEEEEC---------CCCEEEEEECCCC--e---EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEE
Q 001380 668 KNLLYVADT---------ENHALREIDFVND--T---VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIA 733 (1089)
Q Consensus 668 g~~lyVaD~---------~n~~I~~~d~~~g--~---v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyva 733 (1089)
+++|||+-+ ...+|.++.++.. . .+.+.. +... ..-.+-..|+|+|+| .|||+
T Consensus 96 n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~-~lP~-----------~~~H~GgrI~FgPDG-~LYVs 162 (454)
T TIGR03606 96 NPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLA-GLPA-----------GNDHNGGRLVFGPDG-KIYYT 162 (454)
T ss_pred CcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEe-cCCC-----------CCCcCCceEEECCCC-cEEEE
Confidence 356999842 1457888776421 1 122221 0000 001234578899988 79997
Q ss_pred ECCCcE----------E-E-----------EEECCCCeEEEEeCCCccc--cC--CCCC--CCCccccCCceEEEcCCCC
Q 001380 734 MAGQHQ----------I-W-----------EHSTVDGVTRAFSGDGYER--NL--NGSS--SLNTSFAQPSGISLSPDFM 785 (1089)
Q Consensus 734 d~~~~~----------I-~-----------~~~~~~g~~~~~~g~g~~~--~~--~g~~--~~~~~~~~P~glav~~~g~ 785 (1089)
....+. . . ..+...|++.++.-.|... |. .+.. -...++.+|.|++++++|
T Consensus 163 ~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G- 241 (454)
T TIGR03606 163 IGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDG- 241 (454)
T ss_pred ECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCC-
Confidence 544311 0 0 1112234555555444211 10 1110 124578999999999976
Q ss_pred EEEEEeCCC
Q 001380 786 EIYVADSES 794 (1089)
Q Consensus 786 ~lyvad~~~ 794 (1089)
.||++|.+-
T Consensus 242 ~Lw~~e~Gp 250 (454)
T TIGR03606 242 TLYASEQGP 250 (454)
T ss_pred CEEEEecCC
Confidence 999999765
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PTZ00445 p36-lilke protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.2e-09 Score=104.66 Aligned_cols=102 Identities=19% Similarity=0.175 Sum_probs=86.1
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCCh---------------HhHHHHHHHCCCCCCCccEEEEcCC-----------c
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADR---------------IKVDANLAAAGLPVSMFDAIVSADA-----------F 218 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~---------------~~~~~~l~~~gl~~~~fd~i~~~~~-----------~ 218 (1089)
.+.|....++..|++.|++++|+|=.+. ++++..|+..+.. .-++.+++... .
T Consensus 75 ~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~-~~i~~~~~yyp~~w~~p~~y~~~ 153 (219)
T PTZ00445 75 SVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCD-FKIKKVYAYYPKFWQEPSDYRPL 153 (219)
T ss_pred cCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCcc-ceeeeeeeeCCcccCChhhhhhh
Confidence 4678889999999999999999997544 3678888877775 44566665432 3
Q ss_pred cCCCCCHHH--H--HHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcC
Q 001380 219 ENLKPAPDI--F--LSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTT 267 (1089)
Q Consensus 219 ~~~KP~~~~--~--~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~ 267 (1089)
+..||+|++ | +++++++|+.|+++++|.|...++++|++.|+.++.+..
T Consensus 154 gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~NVeaA~~lGi~ai~f~~ 206 (219)
T PTZ00445 154 GLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNNCKNALKEGYIALHVTG 206 (219)
T ss_pred cccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHHHHHHHHCCCEEEEcCC
Confidence 568999999 9 999999999999999999999999999999999999965
|
|
| >KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.1e-08 Score=98.02 Aligned_cols=141 Identities=23% Similarity=0.324 Sum_probs=112.4
Q ss_pred CCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCCh--hcHH
Q 001380 427 TPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNE--KDLE 504 (1089)
Q Consensus 427 g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~--~~~~ 504 (1089)
...+-+|+. .+++|+.++| +.++||++|+.--||-|+.-.....+|+.|+++|++.|++|++.-+..|..+ .+.+
T Consensus 11 ~~siydf~~--~d~~G~~v~l-~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~ 87 (171)
T KOG1651|consen 11 KGSIYDFSA--KDLDGEYVSL-SQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNE 87 (171)
T ss_pred hcceeeeEE--ecCCCCCccH-HHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcH
Confidence 344567775 4669999999 9999999999999999999998888999999999999999999999988765 3556
Q ss_pred HHHHHH-HHcCCccceee--c----CChhHHHHh----------CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHH
Q 001380 505 AIRNAV-LRYGISHPVVN--D----GDMNLWREL----------GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEA 567 (1089)
Q Consensus 505 ~~~~~~-~~~~~~~~v~~--d----~~~~l~~~~----------~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~ 567 (1089)
++..++ .+++..||+.. | ....+++-+ .|.+--+-||||++|+++.++.-...+.+++..|+.
T Consensus 88 Ei~~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~ 167 (171)
T KOG1651|consen 88 EILNFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEK 167 (171)
T ss_pred HHHHHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchhHHH
Confidence 677776 67999887652 1 233455433 244445889999999999998887778888888877
Q ss_pred HHH
Q 001380 568 ALL 570 (1089)
Q Consensus 568 ~l~ 570 (1089)
+|.
T Consensus 168 lL~ 170 (171)
T KOG1651|consen 168 LLA 170 (171)
T ss_pred Hhc
Confidence 764
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.5e-07 Score=95.24 Aligned_cols=230 Identities=17% Similarity=0.180 Sum_probs=145.1
Q ss_pred cccCCcceeEEeeCCCEEEEEECCCCEEEEEECC-----C-C--eEEEEec-CCCCCCCCCCCCcccccccCCceeEEEe
Q 001380 654 ATFNRPQGLAYNAKKNLLYVADTENHALREIDFV-----N-D--TVRTLAG-NGTKGSDYQGGEKGTSQLLNSPWDVCYK 724 (1089)
Q Consensus 654 ~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~-----~-g--~v~~~ag-~g~~~~~~~~~~~~~~~~l~~P~~la~~ 724 (1089)
..+.+|.||++.|.+- +||+|.+.+....+|.. + . .+-++.. .+. ..-..|.|++++
T Consensus 20 p~L~N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~-------------~~~~~PTGiVfN 85 (336)
T TIGR03118 20 PGLRNAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPL-------------AAEGTPTGQVFN 85 (336)
T ss_pred ccccccceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCCC-------------CCCCCccEEEEe
Confidence 3467899999999876 99999999988888865 1 1 1222221 111 112379999998
Q ss_pred cCCCEEEEEECCCc--EEEEEECCCCeEEEEeCCCccc-------cCCCCCCCCccccCCceEEEcCC--CCEEEEEeCC
Q 001380 725 PINEKVYIAMAGQH--QIWEHSTVDGVTRAFSGDGYER-------NLNGSSSLNTSFAQPSGISLSPD--FMEIYVADSE 793 (1089)
Q Consensus 725 ~~g~~lyvad~~~~--~I~~~~~~~g~~~~~~g~g~~~-------~~~g~~~~~~~~~~P~glav~~~--g~~lyvad~~ 793 (1089)
... .+-|+..+.. ..+.|..++|++.-|...-... -.+.+ ..-+--.|||+... ++.||.+|..
T Consensus 86 ~~~-~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s----~~gavYkGLAi~~~~~~~~LYaadF~ 160 (336)
T TIGR03118 86 GSD-TFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDAS----QQGNVYKGLAVGPTGGGDYLYAANFR 160 (336)
T ss_pred CCC-ceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccC----CCcceeeeeEEeecCCCceEEEeccC
Confidence 654 3334432222 3356777788888777432211 11111 11122348888743 5699999999
Q ss_pred CCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEE-------------eCCCCEE
Q 001380 794 SSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVA-------------DSYNHKI 860 (1089)
Q Consensus 794 ~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVa-------------D~~n~~I 860 (1089)
+++|.+|+.+=..+ .+.+. |-+..-++. -.|.+|.-- .|+|||+ ..+.+.|
T Consensus 161 ~g~IDVFd~~f~~~-~~~g~----------F~DP~iPag----yAPFnIqni-g~~lyVtYA~qd~~~~d~v~G~G~G~V 224 (336)
T TIGR03118 161 QGRIDVFKGSFRPP-PLPGS----------FIDPALPAG----YAPFNVQNL-GGTLYVTYAQQDADRNDEVAGAGLGYV 224 (336)
T ss_pred CCceEEecCccccc-cCCCC----------ccCCCCCCC----CCCcceEEE-CCeEEEEEEecCCcccccccCCCcceE
Confidence 99999997542222 11221 111111111 135556433 5678876 2456789
Q ss_pred EEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEcc------CCcEEEEECCCCEEEEEeCCCCCceEEEEe
Q 001380 861 KKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQ------NGNLFIADTNNNIIRYLDLNKEEPELQTLE 931 (1089)
Q Consensus 861 ~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~------~G~lyVad~~n~~I~~~~~~~~~~~~~~l~ 931 (1089)
-+||+++..+.+++.. ..|+.|.||++.+ .|.|+|.+-++++|..||+... ..+-.|.
T Consensus 225 dvFd~~G~l~~r~as~------------g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG-~~~g~L~ 288 (336)
T TIGR03118 225 NVFTLNGQLLRRVASS------------GRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSG-AQLGQLL 288 (336)
T ss_pred EEEcCCCcEEEEeccC------------CcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCC-ceeeeec
Confidence 9999999999999743 2799999999965 4679999999999999999755 2444443
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.3e-09 Score=97.72 Aligned_cols=74 Identities=24% Similarity=0.344 Sum_probs=64.5
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+++|||+||++||++|+.+.|.|.++.++|++ +.++-|.. |....++++|
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~--i~f~~Vd~---------------------------~~~~~l~~~~ 71 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE--TKFIKVNA---------------------------EKAPFLVEKL 71 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC--CEEEEEEc---------------------------ccCHHHHHHC
Confidence 457899999999999999999999999999874 67777744 5567899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCC
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGE 555 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~ 555 (1089)
+|..+|+++++ ++|+.+.++.|.
T Consensus 72 ~v~~vPt~l~f-k~G~~v~~~~g~ 94 (113)
T cd02989 72 NIKVLPTVILF-KNGKTVDRIVGF 94 (113)
T ss_pred CCccCCEEEEE-ECCEEEEEEECc
Confidence 99999999999 799999887764
|
The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit. |
| >cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1 | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.3e-09 Score=95.72 Aligned_cols=86 Identities=20% Similarity=0.326 Sum_probs=67.6
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCC-CCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD-MPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRE 530 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~-~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~ 530 (1089)
.+++++|+||++||++|+.+.|.+.++.+++++ ..+.+..|.+ +. .+++..
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~---------------------------~~-~~~~~~ 68 (104)
T cd02995 17 SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDA---------------------------TA-NDVPSE 68 (104)
T ss_pred CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeC---------------------------cc-hhhhhh
Confidence 358999999999999999999999999999986 4577777743 22 257778
Q ss_pred hCCCceeEEEEECCCC-cEEEEecCCCchhhHHHHH
Q 001380 531 LGVNSWPTFAVVGPNG-KLLAQLAGEGHRKDLDDLV 565 (1089)
Q Consensus 531 ~~v~~~Pt~~lid~~G-~i~~~~~G~~~~~~l~~~l 565 (1089)
+++.++|+++++.+++ .....+.|..+.+.+.++|
T Consensus 69 ~~~~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 69 FVVDGFPTILFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred ccCCCCCEEEEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 8999999999995544 2455688887777776553
|
PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.7e-07 Score=100.07 Aligned_cols=218 Identities=18% Similarity=0.184 Sum_probs=134.6
Q ss_pred CcceeEEeeCCCEEEEEECCC------------CEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEec
Q 001380 658 RPQGLAYNAKKNLLYVADTEN------------HALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKP 725 (1089)
Q Consensus 658 ~P~gla~d~~g~~lyVaD~~n------------~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~ 725 (1089)
+.+++.+|+.|. |||.|++. -+|..||+.++.+.........- ...-+...+++++.
T Consensus 2 sV~~v~iD~~~r-LWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~----------~~~~s~lndl~VD~ 70 (287)
T PF03022_consen 2 SVQRVQIDECGR-LWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDI----------APPDSFLNDLVVDV 70 (287)
T ss_dssp -EEEEEE-TTSE-EEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCC----------S-TCGGEEEEEEEC
T ss_pred cccEEEEcCCCC-EEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHH----------cccccccceEEEEc
Confidence 457899998876 99999873 48999999987654333222110 11234678999997
Q ss_pred CC-----CEEEEEECCCcEEEEEECCCCeEEEEeCCCccccC-CCCCC-CCccccC---CceEEEcC---CCCEEEEEeC
Q 001380 726 IN-----EKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNL-NGSSS-LNTSFAQ---PSGISLSP---DFMEIYVADS 792 (1089)
Q Consensus 726 ~g-----~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~-~g~~~-~~~~~~~---P~glav~~---~g~~lyvad~ 792 (1089)
.. +.+||+|.+...|.+||..++...++...-..... .+... ....|.. ..|+++++ +|+.||+.-.
T Consensus 71 ~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~l 150 (287)
T PF03022_consen 71 RDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPL 150 (287)
T ss_dssp TTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEET
T ss_pred cCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeC
Confidence 43 49999999999999999999988777643111100 00000 0012222 45778866 7779999998
Q ss_pred CCCeEEEEEcCCCCeEEEecCCCCC----CCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCC-
Q 001380 793 ESSSIRALNLKTGGSRLLAGGDPIF----PDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPAS- 867 (1089)
Q Consensus 793 ~~~~I~~~~~~~~~~~~~~g~~~~~----~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~- 867 (1089)
.+.+++++..+- +....... ....-..|.+ -....|+++|++|+||+++..++.|.+.++.+
T Consensus 151 ss~~ly~v~T~~-----L~~~~~~~~~~~~~~v~~lG~k--------~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~ 217 (287)
T PF03022_consen 151 SSRKLYRVPTSV-----LRDPSLSDAQALASQVQDLGDK--------GSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGP 217 (287)
T ss_dssp T-SEEEEEEHHH-----HCSTT--HHH-HHHT-EEEEE-----------SECEEEEETTTEEEEEECCCTEEEEEETTTS
T ss_pred CCCcEEEEEHHH-----hhCccccccccccccceecccc--------CCCCceEEECCCCcEEEecCCCCeEEEEeCCCC
Confidence 888899987541 10000000 0000011111 12457899999999999999999999999987
Q ss_pred ---CeEEEEeccCCCCCCCCcccccccCCCceEEEcc--CCcEEEEEC
Q 001380 868 ---NRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQ--NGNLFIADT 910 (1089)
Q Consensus 868 ---~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~--~G~lyVad~ 910 (1089)
..+.+++-.. ..+..|.++.++. +|.|||...
T Consensus 218 ~~~~~~~~l~~d~-----------~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 218 YTPENFEILAQDP-----------RTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp B-GCCEEEEEE-C-----------C-GSSEEEEEE-T--TS-EEEEE-
T ss_pred cCccchheeEEcC-----------ceeeccceeeeccccCceEEEEEC
Confidence 4566666321 1489999999999 899999863
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.8e-08 Score=100.75 Aligned_cols=136 Identities=13% Similarity=0.171 Sum_probs=102.5
Q ss_pred CCccccCCCCCceeecccccCCCEEEEEEecCCCcc-hhhhhhhHHHHHHHcCCC-CE--EEEEEeCCCCCChhcHHHHH
Q 001380 432 EFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCIN-CMHVLPDLEFLEKKYKDM-PF--TVVGVHSAKFDNEKDLEAIR 507 (1089)
Q Consensus 432 ~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~-C~~~~p~l~~l~~~~~~~-~v--~vi~v~~~~~~~~~~~~~~~ 507 (1089)
.|+ |.+.+|+.++- .+++||++|++|-.+.||. |..|+..|.+..++..++ ++ +=|.|+++ +..|+++.++
T Consensus 121 pF~--L~d~~Gk~~te-~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvD--PeRD~~~~~~ 195 (280)
T KOG2792|consen 121 PFS--LVDHDGKRVTE-KDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVD--PERDSVEVVA 195 (280)
T ss_pred ceE--EEecCCCeecc-cccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeC--cccCCHHHHH
Confidence 355 55679999998 9999999999999999998 999999999998887653 33 23555553 4457889999
Q ss_pred HHHHHcCCccceeecC---ChhHHHHhCCCce--e-------------EEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 508 NAVLRYGISHPVVNDG---DMNLWRELGVNSW--P-------------TFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 508 ~~~~~~~~~~~v~~d~---~~~l~~~~~v~~~--P-------------t~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
++++++.-...-+... -.++++.|.|+.- | ..|||||+|+++.-+--.-+.+++.+-|...+
T Consensus 196 eY~~eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v 275 (280)
T KOG2792|consen 196 EYVSEFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHV 275 (280)
T ss_pred HHHHhcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHH
Confidence 9999987665444433 4567888888532 2 47999999999876655667777777776655
Q ss_pred HHh
Q 001380 570 LFY 572 (1089)
Q Consensus 570 ~~~ 572 (1089)
+.+
T Consensus 276 ~~y 278 (280)
T KOG2792|consen 276 ASY 278 (280)
T ss_pred Hhc
Confidence 443
|
|
| >PRK01158 phosphoglycolate phosphatase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.3e-09 Score=111.75 Aligned_cols=106 Identities=15% Similarity=0.171 Sum_probs=76.2
Q ss_pred EEEEcCCChHhHHHHHHHCCCCCCCccEEEE---cCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCC
Q 001380 184 VAVASSADRIKVDANLAAAGLPVSMFDAIVS---ADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQM 260 (1089)
Q Consensus 184 vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~---~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~ 260 (1089)
+++.++...+.+...+++++.. +..+.+ -+-...+..|...++.+++++|++++++++|||+.||+.|++.+|+
T Consensus 118 ~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~ei~~~~~~Kg~al~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~ 194 (230)
T PRK01158 118 VALRRTVPVEEVRELLEELGLD---LEIVDSGFAIHIKSPGVNKGTGLKKLAELMGIDPEEVAAIGDSENDLEMFEVAGF 194 (230)
T ss_pred eeecccccHHHHHHHHHHcCCc---EEEEecceEEEEeeCCCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhcCc
Confidence 4455555556677777776543 222222 2334456778999999999999999999999999999999999996
Q ss_pred eEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHh
Q 001380 261 RCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILT 296 (1089)
Q Consensus 261 ~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~ 296 (1089)
. |..+...+++++ .+++|..+-.+-.+...|.
T Consensus 195 ~---vam~Na~~~vk~-~a~~v~~~n~~~Gv~~~l~ 226 (230)
T PRK01158 195 G---VAVANADEELKE-AADYVTEKSYGEGVAEAIE 226 (230)
T ss_pred e---EEecCccHHHHH-hcceEecCCCcChHHHHHH
Confidence 4 334445566665 5889988877766666654
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=98.80 E-value=8e-07 Score=98.26 Aligned_cols=209 Identities=18% Similarity=0.270 Sum_probs=131.9
Q ss_pred CceEEEeecCCeEEEEeCCC------------CEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCC-
Q 001380 603 PGKLAIDILNNRLFISDSNH------------NRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKK- 668 (1089)
Q Consensus 603 P~~vavd~~~g~L~vsd~~~------------~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g- 668 (1089)
..++.+|. .|+|||.|+|. .+|+.+|+. +++++++.-+... .. .-...+.+++|...
T Consensus 3 V~~v~iD~-~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~-~~-------~~s~lndl~VD~~~~ 73 (287)
T PF03022_consen 3 VQRVQIDE-CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDI-AP-------PDSFLNDLVVDVRDG 73 (287)
T ss_dssp EEEEEE-T-TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCC-S--------TCGGEEEEEEECTTT
T ss_pred ccEEEEcC-CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHH-cc-------cccccceEEEEccCC
Confidence 35788996 99999999874 489999997 6777776655221 10 11245788998632
Q ss_pred ----CEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCC--cc-cccccCCceeEEEec---CCCEEEEEECCCc
Q 001380 669 ----NLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGE--KG-TSQLLNSPWDVCYKP---INEKVYIAMAGQH 738 (1089)
Q Consensus 669 ----~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~--~~-~~~~l~~P~~la~~~---~g~~lyvad~~~~ 738 (1089)
.++|++|.....|.++|+.++...++-..-....+....- .+ .-+......|+++++ +++.||+.-..+.
T Consensus 74 ~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~ 153 (287)
T PF03022_consen 74 NCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR 153 (287)
T ss_dssp TS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S
T ss_pred CCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC
Confidence 4799999999999999999999888865422211110000 00 011112356788876 6678999988888
Q ss_pred EEEEEECC---CC----------eEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCC-
Q 001380 739 QIWEHSTV---DG----------VTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKT- 804 (1089)
Q Consensus 739 ~I~~~~~~---~g----------~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~- 804 (1089)
.++++... +. .++.+. ....+..|+++|++| .||+++.+.++|.++++.+
T Consensus 154 ~ly~v~T~~L~~~~~~~~~~~~~~v~~lG---------------~k~~~s~g~~~D~~G-~ly~~~~~~~aI~~w~~~~~ 217 (287)
T PF03022_consen 154 KLYRVPTSVLRDPSLSDAQALASQVQDLG---------------DKGSQSDGMAIDPNG-NLYFTDVEQNAIGCWDPDGP 217 (287)
T ss_dssp EEEEEEHHHHCSTT--HHH-HHHT-EEEE---------------E---SECEEEEETTT-EEEEEECCCTEEEEEETTTS
T ss_pred cEEEEEHHHhhCccccccccccccceecc---------------ccCCCCceEEECCCC-cEEEecCCCCeEEEEeCCCC
Confidence 88887632 11 011111 001356799999988 9999999999999999885
Q ss_pred ---CCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEcc--CCcEEEEeC
Q 001380 805 ---GGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAK--NGQIYVADS 855 (1089)
Q Consensus 805 ---~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~--~G~lyVaD~ 855 (1089)
....+++.. ...|+.|.++.++. +|.|||...
T Consensus 218 ~~~~~~~~l~~d-------------------~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 218 YTPENFEILAQD-------------------PRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp B-GCCEEEEEE--------------------CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred cCccchheeEEc-------------------CceeeccceeeeccccCceEEEEEC
Confidence 234444421 12389999999999 899999864
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions | Back alignment and domain information |
|---|
Probab=98.80 E-value=2e-08 Score=102.24 Aligned_cols=72 Identities=15% Similarity=0.294 Sum_probs=62.3
Q ss_pred CCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhC
Q 001380 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELG 532 (1089)
Q Consensus 453 gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~ 532 (1089)
+++|||+||++||++|+.+.|.|.+|+++|. .+.++-|.+ +.. .++..|+
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~---------------------------d~~-~l~~~f~ 132 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYP--AVKFCKIRA---------------------------SAT-GASDEFD 132 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCC--CeEEEEEec---------------------------cch-hhHHhCC
Confidence 4599999999999999999999999999996 478888853 222 6889999
Q ss_pred CCceeEEEEECCCCcEEEEecCC
Q 001380 533 VNSWPTFAVVGPNGKLLAQLAGE 555 (1089)
Q Consensus 533 v~~~Pt~~lid~~G~i~~~~~G~ 555 (1089)
|.++||++++ ++|+++.++.|.
T Consensus 133 v~~vPTllly-k~G~~v~~~vG~ 154 (175)
T cd02987 133 TDALPALLVY-KGGELIGNFVRV 154 (175)
T ss_pred CCCCCEEEEE-ECCEEEEEEech
Confidence 9999999999 899999887764
|
It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.9e-08 Score=89.71 Aligned_cols=82 Identities=34% Similarity=0.571 Sum_probs=69.3
Q ss_pred CEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhCC
Q 001380 454 KVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGV 533 (1089)
Q Consensus 454 k~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v 533 (1089)
++++|.||++||++|+...+.++++.++ ..++.++.++. +.+.++++.|++
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~---------------------------~~~~~~~~~~~v 61 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE--YPKVKFVKVDV---------------------------DENPELAEEYGV 61 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH--CCCceEEEEEC---------------------------CCChhHHHhcCc
Confidence 8899999999999999999999999988 34577888754 345678999999
Q ss_pred CceeEEEEECCCCcEEEEecCCCchhhHHHHH
Q 001380 534 NSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLV 565 (1089)
Q Consensus 534 ~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l 565 (1089)
.++|+++++ .+|+++..+.|....+.+..+|
T Consensus 62 ~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 62 RSIPTFLFF-KNGKEVDRVVGADPKEELEEFL 92 (93)
T ss_pred ccccEEEEE-ECCEEEEEEecCCCHHHHHHHh
Confidence 999999999 6788888888887777777665
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio |
| >TIGR00411 redox_disulf_1 small redox-active disulfide protein 1 | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.8e-08 Score=87.25 Aligned_cols=80 Identities=18% Similarity=0.257 Sum_probs=63.6
Q ss_pred EEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhCCCc
Q 001380 456 VVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNS 535 (1089)
Q Consensus 456 vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~ 535 (1089)
.|..||++||++|+...|.|+++.++++.. +.++-|.. +.+.+++++|++.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~vd~---------------------------~~~~~~~~~~~v~~ 53 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA-VEVEYINV---------------------------MENPQKAMEYGIMA 53 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCc-eEEEEEeC---------------------------ccCHHHHHHcCCcc
Confidence 467899999999999999999999998654 77777743 34557888999999
Q ss_pred eeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 536 WPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 536 ~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
+|++++ +|+. ++.|....+++.+.|+.+
T Consensus 54 vPt~~~---~g~~--~~~G~~~~~~l~~~l~~~ 81 (82)
T TIGR00411 54 VPAIVI---NGDV--EFIGAPTKEELVEAIKKR 81 (82)
T ss_pred CCEEEE---CCEE--EEecCCCHHHHHHHHHhh
Confidence 999876 5654 567877888888877654
|
This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin. |
| >cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1 | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.2e-08 Score=94.14 Aligned_cols=78 Identities=15% Similarity=0.228 Sum_probs=61.4
Q ss_pred cCCCEEEEEEec-------CCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecC
Q 001380 451 LKGKVVVLDFWT-------YCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDG 523 (1089)
Q Consensus 451 ~~gk~vll~Fwa-------~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~ 523 (1089)
.+|++|+|+||| +||++|+.+.|.|+++.+++++ ++.++-|.+++. +...|.
T Consensus 19 ~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd~~--------------------~~w~d~ 77 (119)
T cd02952 19 HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVGDR--------------------PYWRDP 77 (119)
T ss_pred cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcCCc--------------------ccccCc
Confidence 368999999999 9999999999999999999984 377777754211 122356
Q ss_pred ChhHHHHhCCC-ceeEEEEECCCCcEE
Q 001380 524 DMNLWRELGVN-SWPTFAVVGPNGKLL 549 (1089)
Q Consensus 524 ~~~l~~~~~v~-~~Pt~~lid~~G~i~ 549 (1089)
+.++++.|+|. ++||++++...++++
T Consensus 78 ~~~~~~~~~I~~~iPT~~~~~~~~~l~ 104 (119)
T cd02952 78 NNPFRTDPKLTTGVPTLLRWKTPQRLV 104 (119)
T ss_pred chhhHhccCcccCCCEEEEEcCCceec
Confidence 67899999998 999999995544443
|
TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases. |
| >PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.9e-08 Score=121.63 Aligned_cols=94 Identities=17% Similarity=0.275 Sum_probs=73.7
Q ss_pred ccCCCEEEEEEecCCCcchhhhhhhH---HHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChh
Q 001380 450 DLKGKVVVLDFWTYCCINCMHVLPDL---EFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMN 526 (1089)
Q Consensus 450 ~~~gk~vll~Fwa~wC~~C~~~~p~l---~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~ 526 (1089)
..+||+|+|+|||+||++|+.+.+.. .+++++++ ++.++.+.+++ +. +.+.+
T Consensus 471 ~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~-----~~------------------~~~~~ 525 (571)
T PRK00293 471 KGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTA-----NN------------------AEDVA 525 (571)
T ss_pred HhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCC-----CC------------------hhhHH
Confidence 34689999999999999999887764 56777765 47777775421 10 12357
Q ss_pred HHHHhCCCceeEEEEECCCCcEE--EEecCCCchhhHHHHHHHH
Q 001380 527 LWRELGVNSWPTFAVVGPNGKLL--AQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 527 l~~~~~v~~~Pt~~lid~~G~i~--~~~~G~~~~~~l~~~l~~~ 568 (1089)
++++|++.++|+++++|++|+++ .++.|..+.+++.+.++++
T Consensus 526 l~~~~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 526 LLKHYNVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred HHHHcCCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 88999999999999999999984 6788999988888887764
|
|
| >KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.2e-08 Score=101.64 Aligned_cols=91 Identities=29% Similarity=0.377 Sum_probs=75.3
Q ss_pred ccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 450 ~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
.-.+|.|+|+|.|+||+||+...|.+..|..+|+ +.+++-|.+ |.-..++.
T Consensus 18 ~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp--~aVFlkVdV---------------------------d~c~~taa 68 (288)
T KOG0908|consen 18 AAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP--GAVFLKVDV---------------------------DECRGTAA 68 (288)
T ss_pred ccCceEEEEEEEecccchHHhhhhHHHHhhhhCc--ccEEEEEeH---------------------------HHhhchhh
Confidence 3356999999999999999999999999999996 577777754 45567888
Q ss_pred HhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHH
Q 001380 530 ELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLF 571 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~ 571 (1089)
.+||.++||++++ .+|+-+.++.|. +...|++.++..+..
T Consensus 69 ~~gV~amPTFiff-~ng~kid~~qGA-d~~gLe~kv~~~~st 108 (288)
T KOG0908|consen 69 TNGVNAMPTFIFF-RNGVKIDQIQGA-DASGLEEKVAKYAST 108 (288)
T ss_pred hcCcccCceEEEE-ecCeEeeeecCC-CHHHHHHHHHHHhcc
Confidence 9999999999999 899988888875 566677776665543
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.75 E-value=4e-05 Score=81.22 Aligned_cols=252 Identities=13% Similarity=0.180 Sum_probs=168.4
Q ss_pred CCCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEee-CCCEEEEEECCC
Q 001380 601 KFPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNA-KKNLLYVADTEN 678 (1089)
Q Consensus 601 ~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~-~g~~lyVaD~~n 678 (1089)
..+..+.++. +|.+.++-+....|+.+|.. |+.+.++... ..| ++-+.+.. +...+|-+..++
T Consensus 15 ~~i~sl~fs~-~G~~litss~dDsl~LYd~~~g~~~~ti~sk-kyG-------------~~~~~Fth~~~~~i~sStk~d 79 (311)
T KOG1446|consen 15 GKINSLDFSD-DGLLLITSSEDDSLRLYDSLSGKQVKTINSK-KYG-------------VDLACFTHHSNTVIHSSTKED 79 (311)
T ss_pred CceeEEEecC-CCCEEEEecCCCeEEEEEcCCCceeeEeecc-ccc-------------ccEEEEecCCceEEEccCCCC
Confidence 3466788886 77777776667799999875 8888888776 322 23333332 233334444457
Q ss_pred CEEEEEECCC-CeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCC
Q 001380 679 HALREIDFVN-DTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDG 757 (1089)
Q Consensus 679 ~~I~~~d~~~-g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g 757 (1089)
..||-+++.+ ..++.+.|... .-..|.++|.+ ..|++.+...+|+-||.....++.+--
T Consensus 80 ~tIryLsl~dNkylRYF~GH~~-----------------~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~-- 139 (311)
T KOG1446|consen 80 DTIRYLSLHDNKYLRYFPGHKK-----------------RVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLN-- 139 (311)
T ss_pred CceEEEEeecCceEEEcCCCCc-----------------eEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEe--
Confidence 8899888865 66788876553 34678899987 888888888899999976554443321
Q ss_pred ccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCcc-ccCCCCCccccccc
Q 001380 758 YERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLF-KFGDRDGMGSEVLL 836 (1089)
Q Consensus 758 ~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~-~~g~~dg~~~~~~l 836 (1089)
...+.-.|+||+| .+|.+-.++..|..++...-. .+.| .|.-.++ ..
T Consensus 140 --------------~~~~pi~AfDp~G-LifA~~~~~~~IkLyD~Rs~d------------kgPF~tf~i~~~-----~~ 187 (311)
T KOG1446|consen 140 --------------LSGRPIAAFDPEG-LIFALANGSELIKLYDLRSFD------------KGPFTTFSITDN-----DE 187 (311)
T ss_pred --------------cCCCcceeECCCC-cEEEEecCCCeEEEEEecccC------------CCCceeEccCCC-----Cc
Confidence 1124457899998 888888888899999876210 1111 1111111 12
Q ss_pred cCceEEEEccCCcEEEEeCCCCEEEEEeCCCC-eEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEE
Q 001380 837 QHPLGVYCAKNGQIYVADSYNHKIKKLDPASN-RVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNII 915 (1089)
Q Consensus 837 ~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~-~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I 915 (1089)
..-..|-+++||+..+--+.++.++.+|.=+| .+.++.+... ..+-|.+-++.|+|+-+++..++++|
T Consensus 188 ~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~-----------~~~~~~~a~ftPds~Fvl~gs~dg~i 256 (311)
T KOG1446|consen 188 AEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPN-----------AGNLPLSATFTPDSKFVLSGSDDGTI 256 (311)
T ss_pred cceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccC-----------CCCcceeEEECCCCcEEEEecCCCcE
Confidence 34567899999975555566778888886444 4566654322 23557778889999999999999999
Q ss_pred EEEeCCCCCceEEEEe
Q 001380 916 RYLDLNKEEPELQTLE 931 (1089)
Q Consensus 916 ~~~~~~~~~~~~~~l~ 931 (1089)
.++++++.. .+..+.
T Consensus 257 ~vw~~~tg~-~v~~~~ 271 (311)
T KOG1446|consen 257 HVWNLETGK-KVAVLR 271 (311)
T ss_pred EEEEcCCCc-EeeEec
Confidence 999998762 344444
|
|
| >PTZ00102 disulphide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.2e-08 Score=119.14 Aligned_cols=104 Identities=18% Similarity=0.267 Sum_probs=81.5
Q ss_pred CCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCC-CEEEEEEeCCCCCChhcHHHHHHHHHHcCCccc
Q 001380 440 LNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDM-PFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHP 518 (1089)
Q Consensus 440 ~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~-~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (1089)
+.|..+...-.-.||.|||+|||+||++|+.+.|.++++++++++. .+.+..+.+
T Consensus 362 l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~------------------------ 417 (477)
T PTZ00102 362 VVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNG------------------------ 417 (477)
T ss_pred ecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEEC------------------------
Confidence 4555544311236899999999999999999999999999998864 466666643
Q ss_pred eeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 519 VVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 519 v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
+.+...++.|+++++|+++++++++++..++.|..+.+.+.++|++...
T Consensus 418 ---~~~~~~~~~~~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 418 ---TANETPLEEFSWSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHAT 466 (477)
T ss_pred ---CCCccchhcCCCcccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCC
Confidence 3344578899999999999998888876779999999988888877554
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.5e-05 Score=92.83 Aligned_cols=218 Identities=17% Similarity=0.207 Sum_probs=136.9
Q ss_pred CEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEE-EC-CCCEEEEEECCCCeEEEEecCCCC
Q 001380 623 NRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVA-DT-ENHALREIDFVNDTVRTLAGNGTK 700 (1089)
Q Consensus 623 ~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVa-D~-~n~~I~~~d~~~g~v~~~ag~g~~ 700 (1089)
.+|+++|.+|...+.+..... .-...+++|+|+.|+.+ +. ++..|+.+|+.+|..+.+....
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~--------------~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~-- 245 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSS--------------LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFP-- 245 (435)
T ss_pred eEEEEECCCCCCcEEEecCCC--------------CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCC--
Confidence 478888888776665543311 12567788999765554 32 3568999999988877765211
Q ss_pred CCCCCCCCcccccccCCceeEEEecCCCEEEEEEC--CCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceE
Q 001380 701 GSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA--GQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGI 778 (1089)
Q Consensus 701 ~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~--~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~gl 778 (1089)
+ .-...+|+|+|+.|+++.. ++.+||.+|..++.++.+.... ......
T Consensus 246 g---------------~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~---------------~~~~~~ 295 (435)
T PRK05137 246 G---------------MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSP---------------AIDTSP 295 (435)
T ss_pred C---------------cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCC---------------CccCce
Confidence 0 1235679999988876643 3567999999988877664211 012346
Q ss_pred EEcCCCCEEEEEeC--CCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEEEeC
Q 001380 779 SLSPDFMEIYVADS--ESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADS 855 (1089)
Q Consensus 779 av~~~g~~lyvad~--~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~ 855 (1089)
+++|||+.|+++.. +...|++++.+++..+.+..+. + .-....++++|+ |+++..
T Consensus 296 ~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~--------------~--------~~~~~~~SpdG~~ia~~~~ 353 (435)
T PRK05137 296 SYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGG--------------G--------RYSTPVWSPRGDLIAFTKQ 353 (435)
T ss_pred eEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCC--------------C--------cccCeEECCCCCEEEEEEc
Confidence 88999987766543 2357999998877666553210 0 011246788885 555432
Q ss_pred --CCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEE-EECCC----CEEEEEeCCCC
Q 001380 856 --YNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFI-ADTNN----NIIRYLDLNKE 923 (1089)
Q Consensus 856 --~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyV-ad~~n----~~I~~~~~~~~ 923 (1089)
...+|..+|++++....+... .....+.+.++|+ |++ ++... ..|..+++++.
T Consensus 354 ~~~~~~i~~~d~~~~~~~~lt~~---------------~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 354 GGGQFSIGVMKPDGSGERILTSG---------------FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred CCCceEEEEEECCCCceEeccCC---------------CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 235788999877766555321 0134567788886 444 43322 47999999886
|
|
| >PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin [] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.8e-08 Score=101.00 Aligned_cols=93 Identities=20% Similarity=0.288 Sum_probs=71.2
Q ss_pred CccHHHHHHHHHhCCCeEEEEcCC----C----------hHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHH
Q 001380 167 FPGALELINQCKSKGLKVAVASSA----D----------RIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSAS 232 (1089)
Q Consensus 167 ~pG~~~lL~~Lk~~Gi~vaIvSn~----~----------~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l 232 (1089)
.|++.+.|++|.+.|+.++|+||- . ...++.+++.++++ +...++.......||.+.|+..++
T Consensus 31 ~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip---~~~~~a~~~d~~RKP~~GM~~~~~ 107 (159)
T PF08645_consen 31 PPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIP---IQVYAAPHKDPCRKPNPGMWEFAL 107 (159)
T ss_dssp -TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS----EEEEECGCSSTTSTTSSHHHHHHC
T ss_pred chhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHcCCc---eEEEecCCCCCCCCCchhHHHHHH
Confidence 458999999999999999999992 1 24567778888886 444444444578999999999999
Q ss_pred HHcCC----CCCcEEEEcCC-----------hhhHHHHHHcCCeE
Q 001380 233 KILNV----PTSECIVIEDA-----------LAGVQAAKAAQMRC 262 (1089)
Q Consensus 233 ~~lgv----~p~~~v~VGD~-----------~~Di~aA~~aG~~~ 262 (1089)
++++. +.++++||||. -+|..-|.++|+++
T Consensus 108 ~~~~~~~~id~~~Sf~VGDaagr~~~~~d~s~~D~~fA~N~gi~f 152 (159)
T PF08645_consen 108 KDYNDGVEIDLANSFYVGDAAGRSKKKKDFSDSDRKFALNCGIKF 152 (159)
T ss_dssp CCTSTT--S-CCC-EEEESSCHCTB-S--S--HHHHHHHHHT--E
T ss_pred HhccccccccccceEEEeccCCCCCcccccChhHHHHHHHcCCcc
Confidence 99874 88999999996 58999999999874
|
; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A .... |
| >cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=98.71 E-value=1e-07 Score=90.71 Aligned_cols=102 Identities=15% Similarity=0.097 Sum_probs=64.8
Q ss_pred cccCCCEEEEEEecCCCcchhhhhhhH---HHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCCh
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVLPDL---EFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDM 525 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~p~l---~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~ 525 (1089)
..-.+|+|||+|++.||++|+.+.+.. .++.+.+. +++++|-|.. ++.++..+.+.+
T Consensus 11 Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~-~~fv~VkvD~-----~~~~~~~~~~~~-------------- 70 (124)
T cd02955 11 ARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILN-ENFVPIKVDR-----EERPDVDKIYMN-------------- 70 (124)
T ss_pred HHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHh-CCEEEEEEeC-----CcCcHHHHHHHH--------------
Confidence 344689999999999999999886522 23444433 2577777743 222222222211
Q ss_pred hHHHHhCCCceeEEEEECCCCcEEEEecCC-----CchhhHHHHHHHHHH
Q 001380 526 NLWRELGVNSWPTFAVVGPNGKLLAQLAGE-----GHRKDLDDLVEAALL 570 (1089)
Q Consensus 526 ~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~-----~~~~~l~~~l~~~l~ 570 (1089)
.....|++.++|+++++|++|++++...+- .....+..+++.+.+
T Consensus 71 ~~~~~~~~~G~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (124)
T cd02955 71 AAQAMTGQGGWPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIRE 120 (124)
T ss_pred HHHHhcCCCCCCEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHHH
Confidence 122357999999999999999999875432 233455566555543
|
The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation. |
| >KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.8e-07 Score=100.00 Aligned_cols=148 Identities=18% Similarity=0.307 Sum_probs=112.2
Q ss_pred cCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCC-
Q 001380 715 LNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSE- 793 (1089)
Q Consensus 715 l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~- 793 (1089)
-..|-||+++..|+.|||||+.- .+++++++++..+...... + ...+...+++.++++| .+|++|+.
T Consensus 114 CGRPLGl~f~~~ggdL~VaDAYl-GL~~V~p~g~~a~~l~~~~-----~-----G~~~kf~N~ldI~~~g-~vyFTDSSs 181 (376)
T KOG1520|consen 114 CGRPLGIRFDKKGGDLYVADAYL-GLLKVGPEGGLAELLADEA-----E-----GKPFKFLNDLDIDPEG-VVYFTDSSS 181 (376)
T ss_pred cCCcceEEeccCCCeEEEEecce-eeEEECCCCCcceeccccc-----c-----CeeeeecCceeEcCCC-eEEEecccc
Confidence 34899999999999999999864 5889999998866655322 1 1345567899999976 99999975
Q ss_pred ----------------CCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCC-cEEEEeCC
Q 001380 794 ----------------SSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNG-QIYVADSY 856 (1089)
Q Consensus 794 ----------------~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G-~lyVaD~~ 856 (1089)
++|+.++|+.+..++++.. .|..|.|++.++|+ .+.++++.
T Consensus 182 k~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld----------------------~L~F~NGlaLS~d~sfvl~~Et~ 239 (376)
T KOG1520|consen 182 KYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLD----------------------GLYFPNGLALSPDGSFVLVAETT 239 (376)
T ss_pred ccchhheEEeeecCCCccceEEecCcccchhhhhh----------------------cccccccccCCCCCCEEEEEeec
Confidence 3577788877666655533 27789999999998 58899999
Q ss_pred CCEEEEEeCCCCeE---EEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEE
Q 001380 857 NHKIKKLDPASNRV---STLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIAD 909 (1089)
Q Consensus 857 n~~I~~~d~~~~~v---~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad 909 (1089)
..+|+++=.++..+ ..++. +-+ ..|.-|..+++|+.||+=
T Consensus 240 ~~ri~rywi~g~k~gt~EvFa~-~LP------------G~PDNIR~~~~G~fWVal 282 (376)
T KOG1520|consen 240 TARIKRYWIKGPKAGTSEVFAE-GLP------------GYPDNIRRDSTGHFWVAL 282 (376)
T ss_pred cceeeeeEecCCccCchhhHhh-cCC------------CCCcceeECCCCCEEEEE
Confidence 99999986655544 33331 222 348899999999999985
|
|
| >cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.6e-08 Score=92.51 Aligned_cols=69 Identities=22% Similarity=0.477 Sum_probs=54.9
Q ss_pred CCEEEEEEecCCCcchhhhhhhHHHHHHHcCCC--CEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHH
Q 001380 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDM--PFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRE 530 (1089)
Q Consensus 453 gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~--~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~ 530 (1089)
+|++||+||++||++|+.+.|.++++++++++. .+.+..|.+. .+....+++.
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~-------------------------~~~~~~~~~~ 73 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCA-------------------------DEENVALCRD 73 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEecc-------------------------chhhHHHHHh
Confidence 479999999999999999999999999988642 3666666321 0234578999
Q ss_pred hCCCceeEEEEECCCC
Q 001380 531 LGVNSWPTFAVVGPNG 546 (1089)
Q Consensus 531 ~~v~~~Pt~~lid~~G 546 (1089)
|+|.++|+++++.++.
T Consensus 74 ~~i~~~Pt~~lf~~~~ 89 (114)
T cd02992 74 FGVTGYPTLRYFPPFS 89 (114)
T ss_pred CCCCCCCEEEEECCCC
Confidence 9999999999995444
|
QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen. |
| >TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.4e-08 Score=112.44 Aligned_cols=90 Identities=17% Similarity=0.225 Sum_probs=70.3
Q ss_pred cCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCC-hhHH-
Q 001380 451 LKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGD-MNLW- 528 (1089)
Q Consensus 451 ~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~-~~l~- 528 (1089)
.++++|||+|||+||++|+.+.|.+.+++++|++.++.++.|.+ |.+ ..++
T Consensus 369 ~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdv---------------------------D~~~~~~~~ 421 (463)
T TIGR00424 369 ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRA---------------------------DGDQKEFAK 421 (463)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEEC---------------------------CCCccHHHH
Confidence 36899999999999999999999999999999877788888854 222 2344
Q ss_pred HHhCCCceeEEEEECCCCcEEEEec-CCCchhhHHHHHHH
Q 001380 529 RELGVNSWPTFAVVGPNGKLLAQLA-GEGHRKDLDDLVEA 567 (1089)
Q Consensus 529 ~~~~v~~~Pt~~lid~~G~i~~~~~-G~~~~~~l~~~l~~ 567 (1089)
+.|+|.++||++++.++..-...|. |..+.+.|..+|+.
T Consensus 422 ~~~~I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 422 QELQLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred HHcCCCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 6899999999999954433333465 46788888887765
|
This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis. |
| >TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.6e-07 Score=99.77 Aligned_cols=86 Identities=19% Similarity=0.214 Sum_probs=70.2
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCC---hHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCc
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSAD---RIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSE 241 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~---~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~ 241 (1089)
.++||+.++|+.|+++|++++++||+. ++.+...++++|++...++.++..++ .++++..+..+.+.+++
T Consensus 118 ~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~~---~~~K~~rr~~I~~~y~I---- 190 (266)
T TIGR01533 118 KPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKKD---KSSKESRRQKVQKDYEI---- 190 (266)
T ss_pred CcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCCC---CCCcHHHHHHHHhcCCE----
Confidence 689999999999999999999999976 44566888999997334577777753 35677888888888887
Q ss_pred EEEEcCChhhHHHHHH
Q 001380 242 CIVIEDALAGVQAAKA 257 (1089)
Q Consensus 242 ~v~VGD~~~Di~aA~~ 257 (1089)
+++|||...|+.....
T Consensus 191 vl~vGD~~~Df~~~~~ 206 (266)
T TIGR01533 191 VLLFGDNLLDFDDFFY 206 (266)
T ss_pred EEEECCCHHHhhhhhc
Confidence 8999999999965443
|
which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles. |
| >TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.8e-07 Score=99.73 Aligned_cols=101 Identities=12% Similarity=0.122 Sum_probs=69.0
Q ss_pred EEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEE
Q 001380 185 AVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIA 264 (1089)
Q Consensus 185 aIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~ 264 (1089)
++++....+.+...++..++. .+... ..-+-...+..|...++.+++++|++++++++|||+.||+.|++.+|+.
T Consensus 111 ~~~~~~~~~~~~~~l~~~~~~-~~~~~-~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~iGDs~ND~~ml~~ag~~--- 185 (215)
T TIGR01487 111 IMREGKDVDEVREIIKERGLN-LVDSG-FAIHIMKKGVDKGVGVEKLKELLGIKPEEVAAIGDSENDIDLFRVVGFK--- 185 (215)
T ss_pred EecCCccHHHHHHHHHhCCeE-EEecC-ceEEEecCCCChHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHhCCCe---
Confidence 344555556667777776653 21110 1112223456777899999999999999999999999999999999954
Q ss_pred EcCCCCHHHHhhcCCcEEecCcccCCH
Q 001380 265 VTTTLSEERLKEASPSLIRKEIGSVSL 291 (1089)
Q Consensus 265 V~~g~~~~~l~~~~~d~vi~dl~el~i 291 (1089)
|..+...+++++ .++++..+-.+-.+
T Consensus 186 vam~na~~~~k~-~A~~v~~~~~~~Gv 211 (215)
T TIGR01487 186 VAVANADDQLKE-IADYVTSNPYGEGV 211 (215)
T ss_pred EEcCCccHHHHH-hCCEEcCCCCCchh
Confidence 444445666666 47888876555433
|
TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.68 E-value=2e-06 Score=101.05 Aligned_cols=260 Identities=14% Similarity=0.145 Sum_probs=143.6
Q ss_pred CCeEEEEeCCCCEEEEEeCCCCEEE-EEecCCCCCCCCCC----------CCccccCCcceeEEeeCCCEEEEEECCCCE
Q 001380 612 NNRLFISDSNHNRIVVTDLDGNFIV-QIGSSGEEGLRDGS----------FDDATFNRPQGLAYNAKKNLLYVADTENHA 680 (1089)
Q Consensus 612 ~g~L~vsd~~~~~I~~~~~~g~~~~-~i~~~g~~g~~dG~----------~~~~~f~~P~gla~d~~g~~lyVaD~~n~~ 680 (1089)
+..|||-|-.|.||.+++.+--... .+..+...+.-.+. +..++|. +-++++|+.+++++...+.
T Consensus 141 Gr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~----~PlpnDGk~l~~~~ey~~~ 216 (635)
T PRK02888 141 GRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFR----IPLPNDGKDLDDPKKYRSL 216 (635)
T ss_pred eeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccc----cccCCCCCEeecccceeEE
Confidence 6789999999999999998732211 22222122111111 1122232 3356688878888777788
Q ss_pred EEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC---cE-----------EEEEECC
Q 001380 681 LREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ---HQ-----------IWEHSTV 746 (1089)
Q Consensus 681 I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~---~~-----------I~~~~~~ 746 (1089)
+..||.++..+..-.-.+ .+|..++++++|+++|++...+ +. +..|+..
T Consensus 217 vSvID~etmeV~~qV~Vd-----------------gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 217 FTAVDAETMEVAWQVMVD-----------------GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred EEEEECccceEEEEEEeC-----------------CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 999998875443222111 1678888999998999885221 22 2233322
Q ss_pred C---------------CeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEe
Q 001380 747 D---------------GVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLA 811 (1089)
Q Consensus 747 ~---------------g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~ 811 (1089)
. +.+..+.+.............-.--..|+|++++|||+++|++...++.|.+++...... .+.
T Consensus 280 ~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~-~~~ 358 (635)
T PRK02888 280 RIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD-LFD 358 (635)
T ss_pred HHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh-hhh
Confidence 1 122222221100000000000011247999999999999999999999999999874321 111
Q ss_pred cCCCCCCCCccccCCCCCc-cccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCC-------CeEEEEeccCCCCCCC
Q 001380 812 GGDPIFPDNLFKFGDRDGM-GSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPAS-------NRVSTLAGIGKAGFKD 883 (1089)
Q Consensus 812 g~~~~~~~~l~~~g~~dg~-~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~-------~~v~t~~g~g~~g~~~ 883 (1089)
+. + . .++-. +.-..-..|+..++|++|+.|++=.-...|.++|.+. ..+..+...-.-.|..
T Consensus 359 ~~-------~-~--~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~p 428 (635)
T PRK02888 359 GK-------I-K--PRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQP 428 (635)
T ss_pred cc-------C-C--ccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCcc
Confidence 00 0 0 00000 0001123699999999999999988888999998653 1111111111112223
Q ss_pred CcccccccCCCceEEEccCCcEEEE
Q 001380 884 GAALAAQLSEPAGIIEAQNGNLFIA 908 (1089)
Q Consensus 884 g~~~~~~l~~P~gi~vd~~G~lyVa 908 (1089)
| .+..+.|=..+++|+-+|+
T Consensus 429 g-----h~~~~~g~t~~~dgk~l~~ 448 (635)
T PRK02888 429 G-----HNHASMGETKEADGKWLVS 448 (635)
T ss_pred c-----eeeecCCCcCCCCCCEEEE
Confidence 3 4555566666778874444
|
|
| >TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.4e-08 Score=105.29 Aligned_cols=110 Identities=15% Similarity=0.124 Sum_probs=77.0
Q ss_pred eEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeE
Q 001380 183 KVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRC 262 (1089)
Q Consensus 183 ~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~ 262 (1089)
...+.+....+.+...++.++.....+......+-...+..|...+..+++++|++++++++|||+.||+.|++.+|+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~-- 186 (225)
T TIGR01482 109 LVKMRYGIDVDTVREIIKELGLNLVAVDSGFDIHILPQGVNKGVAVKKLKEKLGIKPGETLVCGDSENDIDLFEVPGF-- 186 (225)
T ss_pred eEEEeecCCHHHHHHHHHhcCceEEEecCCcEEEEeeCCCCHHHHHHHHHHHhCCCHHHEEEECCCHhhHHHHHhcCc--
Confidence 344555556677777888877631100001122334456788899999999999999999999999999999999995
Q ss_pred EEEcCCCCHHHHhhcCCcEEecCcccCC----HHHHHh
Q 001380 263 IAVTTTLSEERLKEASPSLIRKEIGSVS----LNDILT 296 (1089)
Q Consensus 263 i~V~~g~~~~~l~~~~~d~vi~dl~el~----i~~ll~ 296 (1089)
.|..+...+++++ .+++|..+-.+-. +..+|+
T Consensus 187 -~vam~Na~~~~k~-~A~~vt~~~~~~G~~~~v~~~l~ 222 (225)
T TIGR01482 187 -GVAVANAQPELKE-WADYVTESPYGEGGAEAIGEILQ 222 (225)
T ss_pred -eEEcCChhHHHHH-hcCeecCCCCCCcHHHHHHHHHH
Confidence 3545555566655 5899988777765 555554
|
catalyze the same reaction as SPP. |
| >PLN02309 5'-adenylylsulfate reductase | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.9e-08 Score=110.72 Aligned_cols=90 Identities=17% Similarity=0.239 Sum_probs=72.3
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeec-CChhHHH-
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVND-GDMNLWR- 529 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d-~~~~l~~- 529 (1089)
++|++||+||++||++|+++.|.+.+++++|+..++.++.|.+ | .+..+++
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~---------------------------d~~~~~la~~ 416 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRA---------------------------DGDQKEFAKQ 416 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEEC---------------------------CCcchHHHHh
Confidence 6899999999999999999999999999999877899988854 3 3456775
Q ss_pred HhCCCceeEEEEECCCCcEEEEecC-CCchhhHHHHHHHH
Q 001380 530 ELGVNSWPTFAVVGPNGKLLAQLAG-EGHRKDLDDLVEAA 568 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i~~~~~G-~~~~~~l~~~l~~~ 568 (1089)
.|+|.++||++++.+...-...|.| ..+.+.|..+|+.+
T Consensus 417 ~~~I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 417 ELQLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred hCCCceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 5999999999999544433344654 56788888887753
|
|
| >PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.1e-07 Score=99.31 Aligned_cols=85 Identities=20% Similarity=0.398 Sum_probs=64.7
Q ss_pred ccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccC---------CC----CCHHHHHHH---
Q 001380 168 PGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFEN---------LK----PAPDIFLSA--- 231 (1089)
Q Consensus 168 pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~---------~K----P~~~~~~~~--- 231 (1089)
|++.++|+.++++|++++|+|++....++.+++.+|++ . +.+++.+.... .. -|...++.+
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~-~--~~v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~~ 168 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGID-D--DNVIGNELFDNGGGIFTGRITGSNCGGKAEALKELYIR 168 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSS-E--GGEEEEEEECTTCCEEEEEEEEEEESHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCC-c--eEEEEEeeeecccceeeeeECCCCCCcHHHHHHHHHHH
Confidence 66669999999999999999999999999999999997 2 12333221000 00 256667666
Q ss_pred HHHcCCCCCcEEEEcCChhhHHHHH
Q 001380 232 SKILNVPTSECIVIEDALAGVQAAK 256 (1089)
Q Consensus 232 l~~lgv~p~~~v~VGD~~~Di~aA~ 256 (1089)
..+ +....++++|||+.+|+.+++
T Consensus 169 ~~~-~~~~~~~~~iGDs~~D~~~lr 192 (192)
T PF12710_consen 169 DEE-DIDPDRVIAIGDSINDLPMLR 192 (192)
T ss_dssp HHH-THTCCEEEEEESSGGGHHHHH
T ss_pred hhc-CCCCCeEEEEECCHHHHHHhC
Confidence 444 788899999999999999875
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.9e-05 Score=90.15 Aligned_cols=218 Identities=16% Similarity=0.166 Sum_probs=134.9
Q ss_pred CEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC--CCCEEEEEECCCCeEEEEecCCCC
Q 001380 623 NRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT--ENHALREIDFVNDTVRTLAGNGTK 700 (1089)
Q Consensus 623 ~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~--~n~~I~~~d~~~g~v~~~ag~g~~ 700 (1089)
.+|.++|.+|.....+-..+. .-...+++|+|+.|+.+.. +.+.|+++++.++..+.+....
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~--------------~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~-- 247 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAE--------------PILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFR-- 247 (433)
T ss_pred EEEEEECCCCCCceEeecCCC--------------ccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC--
Confidence 357777777665544433211 1246678889986666543 3468999999888877765311
Q ss_pred CCCCCCCCcccccccCCceeEEEecCCCEEEEEE--CCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceE
Q 001380 701 GSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAM--AGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGI 778 (1089)
Q Consensus 701 ~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad--~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~gl 778 (1089)
+ .....+|+|+|+.|+++. .++.+|+.+|..++.++.+.... ......
T Consensus 248 g---------------~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~---------------~~~~~~ 297 (433)
T PRK04922 248 G---------------INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHF---------------GIDTEP 297 (433)
T ss_pred C---------------CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCC---------------CCccce
Confidence 1 113568999998887654 34568999999988876654211 112346
Q ss_pred EEcCCCCEEEEEeCC--CCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEEEeC
Q 001380 779 SLSPDFMEIYVADSE--SSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADS 855 (1089)
Q Consensus 779 av~~~g~~lyvad~~--~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~ 855 (1089)
++++||+.|+++... ...|+.++..++..+.+... | .....++++++|+ |+++..
T Consensus 298 ~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~-----------g-----------~~~~~~~~SpDG~~Ia~~~~ 355 (433)
T PRK04922 298 TWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQ-----------G-----------NYNARASVSPDGKKIAMVHG 355 (433)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecC-----------C-----------CCccCEEECCCCCEEEEEEC
Confidence 889999877665432 34688888877666544211 0 0122467889985 655543
Q ss_pred C--CCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEE-EEC-CCCEEEEEeCCCC
Q 001380 856 Y--NHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFI-ADT-NNNIIRYLDLNKE 923 (1089)
Q Consensus 856 ~--n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyV-ad~-~n~~I~~~~~~~~ 923 (1089)
. ...|..+|..++....+... . . -...++.++|+ |++ ++. +...|..+++++.
T Consensus 356 ~~~~~~I~v~d~~~g~~~~Lt~~-~------------~--~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 356 SGGQYRIAVMDLSTGSVRTLTPG-S------------L--DESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred CCCceeEEEEECCCCCeEECCCC-C------------C--CCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 2 34799999988877655321 0 0 12346778886 444 433 3457888888775
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.1e-05 Score=85.22 Aligned_cols=221 Identities=18% Similarity=0.269 Sum_probs=143.3
Q ss_pred CCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC
Q 001380 598 SPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE 677 (1089)
Q Consensus 598 ~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~ 677 (1089)
+-...-.+++++|..+.||..-...-.|++++..|+++++|...+ |..|.+|.+..+|. ..++|..
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g-------------~~DpE~Ieyig~n~-fvi~dER 148 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG-------------FSDPETIEYIGGNQ-FVIVDER 148 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc-------------cCChhHeEEecCCE-EEEEehh
Confidence 334456789999988888877666678999999999999998763 67899999986555 7778888
Q ss_pred CCEEEEEECCCC-eEEEEec----CCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC-CcEEEEEECCCCeEE
Q 001380 678 NHALREIDFVND-TVRTLAG----NGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG-QHQIWEHSTVDGVTR 751 (1089)
Q Consensus 678 n~~I~~~d~~~g-~v~~~ag----~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~-~~~I~~~~~~~g~~~ 751 (1089)
..++.++..+.+ .+..... .|..... + ..=-|+|+++.+..+|++-.. .-.|+.++.......
T Consensus 149 ~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~-N----------~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~ 217 (316)
T COG3204 149 DRALYLFTVDADTTVISAKVQKIPLGTTNKK-N----------KGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLS 217 (316)
T ss_pred cceEEEEEEcCCccEEeccceEEeccccCCC-C----------cCceeeecCCCCceEEEEEccCCcEEEEEecCCcccc
Confidence 888887766543 2222111 1111100 0 123589999999999999654 345666652211111
Q ss_pred EEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEE--ecCCCCCCCCccccCCCCC
Q 001380 752 AFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLL--AGGDPIFPDNLFKFGDRDG 829 (1089)
Q Consensus 752 ~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~--~g~~~~~~~~l~~~g~~dg 829 (1089)
.-..... .....-.+..-+|+.+++..+.|+|-.-++..+..++.++..+..+ .+|. .|
T Consensus 218 ~~~~~~~------~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~-------------~g 278 (316)
T COG3204 218 VHASLDP------TADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGN-------------HG 278 (316)
T ss_pred cccccCc------ccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCC-------------CC
Confidence 1110000 0001122456789999988789999999999999999986644333 2221 11
Q ss_pred ccccccccCceEEEEccCCcEEEEeCCCCEEEEEeC
Q 001380 830 MGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDP 865 (1089)
Q Consensus 830 ~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~ 865 (1089)
-...+..|.|||+|.+|+|||+..-| --++|.+
T Consensus 279 --L~~dipqaEGiamDd~g~lYIvSEPn-lfy~F~~ 311 (316)
T COG3204 279 --LSSDIPQAEGIAMDDDGNLYIVSEPN-LFYRFTP 311 (316)
T ss_pred --CcccCCCcceeEECCCCCEEEEecCC-cceeccc
Confidence 12236789999999999999886543 4455544
|
|
| >cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.4e-07 Score=97.30 Aligned_cols=71 Identities=24% Similarity=0.294 Sum_probs=60.3
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
++++|||+||++||++|+.+.|.|.+|+++|.. +.++-|.+ + .....|
T Consensus 101 ~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~--vkFvkI~a-----------------------------d-~~~~~~ 148 (192)
T cd02988 101 KDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD--TKFVKIIS-----------------------------T-QCIPNY 148 (192)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC--CEEEEEEh-----------------------------H-HhHhhC
Confidence 356999999999999999999999999999974 67777732 1 124789
Q ss_pred CCCceeEEEEECCCCcEEEEecCC
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGE 555 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~ 555 (1089)
++..+||++++ ++|+++.++.|.
T Consensus 149 ~i~~lPTlliy-k~G~~v~~ivG~ 171 (192)
T cd02988 149 PDKNLPTILVY-RNGDIVKQFIGL 171 (192)
T ss_pred CCCCCCEEEEE-ECCEEEEEEeCc
Confidence 99999999999 999999998874
|
It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.3e-07 Score=91.03 Aligned_cols=194 Identities=15% Similarity=0.130 Sum_probs=120.7
Q ss_pred ceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCC-HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHH
Q 001380 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTG-EANFLGGVASVKGVKGFDSEAAKKRFFEIYLDK 157 (1089)
Q Consensus 79 ~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (1089)
.-+++||+|-||+|.... ..+...++......++...+..+ .-++...+.++.+-......+..+.+..
T Consensus 13 ril~~FDFD~TIid~dSD-----~wVv~~lp~~~l~~qL~~t~p~~~Wne~M~rv~k~Lheqgv~~~~ik~~~r~----- 82 (256)
T KOG3120|consen 13 RILLVFDFDRTIIDQDSD-----NWVVDELPTTDLFNQLRDTYPKGFWNELMDRVFKELHEQGVRIAEIKQVLRS----- 82 (256)
T ss_pred cEEEEEecCceeecCCcc-----hHHHHhcccchhHHHHHHhcccchHHHHHHHHHHHHHHcCCCHHHHHHHHhc-----
Confidence 468999999999986632 22333344443333433333221 2223333333333223233333322221
Q ss_pred hcCCCCCCCCccHHHHHHHHHhCCC-eEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcC----CccC------------
Q 001380 158 YAKPNSGIGFPGALELINQCKSKGL-KVAVASSADRIKVDANLAAAGLPVSMFDAIVSAD----AFEN------------ 220 (1089)
Q Consensus 158 ~~~~~~~~~~pG~~~lL~~Lk~~Gi-~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~----~~~~------------ 220 (1089)
.+..||+.++++.+++.|. .+.|+|..+.-.++.+|+.+++. ++|..|++.- +-+.
T Consensus 83 ------iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~-d~F~~IfTNPa~~da~G~L~v~pyH~~hsC 155 (256)
T KOG3120|consen 83 ------IPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIH-DLFSEIFTNPACVDASGRLLVRPYHTQHSC 155 (256)
T ss_pred ------CCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHH-HHHHHHhcCCcccCCCCcEEeecCCCCCcc
Confidence 2789999999999999985 99999999999999999999997 9998887652 1110
Q ss_pred -----CCCCHHHHHHHH---HHcCCCCCcEEEEcCChhhHHHHHHc-CCeEEEEcCCCCHHHHhhcCCcEEecCcccC
Q 001380 221 -----LKPAPDIFLSAS---KILNVPTSECIVIEDALAGVQAAKAA-QMRCIAVTTTLSEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 221 -----~KP~~~~~~~~l---~~lgv~p~~~v~VGD~~~Di~aA~~a-G~~~i~V~~g~~~~~l~~~~~d~vi~dl~el 289 (1089)
.--|..++.+.. .+-|+..++.+||||+.+|+-.-... +.+.+.-..|.....+....|-.+..++-++
T Consensus 156 ~~CPsNmCKg~Vl~~~~~s~~~~gv~yer~iYvGDG~nD~CP~l~Lr~~D~ampRkgfpl~k~~~~~p~~~kasV~~W 233 (256)
T KOG3120|consen 156 NLCPSNMCKGLVLDELVASQLKDGVRYERLIYVGDGANDFCPVLRLRACDVAMPRKGFPLWKLISANPMLLKASVLEW 233 (256)
T ss_pred CcCchhhhhhHHHHHHHHHHhhcCCceeeEEEEcCCCCCcCcchhcccCceecccCCCchHhhhhcCcceeeeeEEec
Confidence 011223333332 23377888999999999998776554 4466666667766666666665554444444
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.8e-06 Score=93.90 Aligned_cols=231 Identities=21% Similarity=0.384 Sum_probs=128.6
Q ss_pred cCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeE-EEEecCCCCCCCCCCCCcccccccCCceeEEEecC---CCEEE
Q 001380 656 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTV-RTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPI---NEKVY 731 (1089)
Q Consensus 656 f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v-~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~---g~~ly 731 (1089)
++.|.+|++.|+|. +||++. .++|++++. ++.. ..+.....- . ........|++++|+ ++.||
T Consensus 1 L~~P~~~a~~pdG~-l~v~e~-~G~i~~~~~-~g~~~~~v~~~~~v-~---------~~~~~gllgia~~p~f~~n~~lY 67 (331)
T PF07995_consen 1 LNNPRSMAFLPDGR-LLVAER-SGRIWVVDK-DGSLKTPVADLPEV-F---------ADGERGLLGIAFHPDFASNGYLY 67 (331)
T ss_dssp ESSEEEEEEETTSC-EEEEET-TTEEEEEET-TTEECEEEEE-TTT-B---------TSTTBSEEEEEE-TTCCCC-EEE
T ss_pred CCCceEEEEeCCCc-EEEEeC-CceEEEEeC-CCcCcceecccccc-c---------ccccCCcccceeccccCCCCEEE
Confidence 46899999999987 999998 899999994 4444 444322110 0 011236789999994 45999
Q ss_pred EEECCC--------cEEEEEECCCC--eE----EEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCC----
Q 001380 732 IAMAGQ--------HQIWEHSTVDG--VT----RAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSE---- 793 (1089)
Q Consensus 732 vad~~~--------~~I~~~~~~~g--~~----~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~---- 793 (1089)
++-... .+|.++....+ .+ ..+.+.. ........-.+|+++||| .|||+-..
T Consensus 68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p---------~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~ 137 (331)
T PF07995_consen 68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLP---------DTSSGNHNGGGLAFGPDG-KLYVSVGDGGND 137 (331)
T ss_dssp EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEE---------S-CSSSS-EEEEEE-TTS-EEEEEEB-TTTG
T ss_pred EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeC---------CCCCCCCCCccccCCCCC-cEEEEeCCCCCc
Confidence 987632 46777766544 11 1121110 001223445689999999 99997532
Q ss_pred ---------CCeEEEEEcCCCCeEEEecCCCCC-----CCCccccCCCCCccccccccCceEEEEccC-CcEEEEeCCCC
Q 001380 794 ---------SSSIRALNLKTGGSRLLAGGDPIF-----PDNLFKFGDRDGMGSEVLLQHPLGVYCAKN-GQIYVADSYNH 858 (1089)
Q Consensus 794 ---------~~~I~~~~~~~~~~~~~~g~~~~~-----~~~l~~~g~~dg~~~~~~l~~P~gva~~~~-G~lyVaD~~n~ 858 (1089)
.++|.++++++. +....|.. ...+|+.| |.+|.++++++. |+||++|.+..
T Consensus 138 ~~~~~~~~~~G~ilri~~dG~----~p~dnP~~~~~~~~~~i~A~G----------lRN~~~~~~d~~tg~l~~~d~G~~ 203 (331)
T PF07995_consen 138 DNAQDPNSLRGKILRIDPDGS----IPADNPFVGDDGADSEIYAYG----------LRNPFGLAFDPNTGRLWAADNGPD 203 (331)
T ss_dssp GGGCSTTSSTTEEEEEETTSS----B-TTSTTTTSTTSTTTEEEE------------SEEEEEEEETTTTEEEEEEE-SS
T ss_pred ccccccccccceEEEecccCc----CCCCCccccCCCceEEEEEeC----------CCccccEEEECCCCcEEEEccCCC
Confidence 357888887642 11222221 11223333 668999999998 99999997653
Q ss_pred ---EEEEEeCCCCeE--EEEeccCCCCC-------CCC---c-ccccccCCCceEEEcc-------CCcEEEEECCCCEE
Q 001380 859 ---KIKKLDPASNRV--STLAGIGKAGF-------KDG---A-ALAAQLSEPAGIIEAQ-------NGNLFIADTNNNII 915 (1089)
Q Consensus 859 ---~I~~~d~~~~~v--~t~~g~g~~g~-------~~g---~-~~~~~l~~P~gi~vd~-------~G~lyVad~~n~~I 915 (1089)
.|.++.+..+.= ....+....+. ..+ + ..-..-..|.|+.+-. .|.++|++...++|
T Consensus 204 ~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i 283 (331)
T PF07995_consen 204 GWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRI 283 (331)
T ss_dssp SSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEE
T ss_pred CCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEE
Confidence 455554311100 00000000000 000 0 0011125688888752 46799999999999
Q ss_pred EEEeCCCC
Q 001380 916 RYLDLNKE 923 (1089)
Q Consensus 916 ~~~~~~~~ 923 (1089)
.++.++..
T Consensus 284 ~~~~~~~~ 291 (331)
T PF07995_consen 284 WRLDLDED 291 (331)
T ss_dssp EEEEEETT
T ss_pred EEEeeecC
Confidence 99999755
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >TIGR00412 redox_disulf_2 small redox-active disulfide protein 2 | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.6e-07 Score=81.70 Aligned_cols=73 Identities=22% Similarity=0.384 Sum_probs=54.7
Q ss_pred EEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhCCCce
Q 001380 457 VLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSW 536 (1089)
Q Consensus 457 ll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~ 536 (1089)
.|+||++||++|....|.++++.+++... +.++-| | +...+..|++.++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~-~~~~~v-----------------------------~-~~~~a~~~~v~~v 50 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGID-AEFEKV-----------------------------T-DMNEILEAGVTAT 50 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCC-eEEEEe-----------------------------C-CHHHHHHcCCCcC
Confidence 37899999999999999999999998754 777766 1 1223677999999
Q ss_pred eEEEEECCCCcEEEEecCC-CchhhHHHHH
Q 001380 537 PTFAVVGPNGKLLAQLAGE-GHRKDLDDLV 565 (1089)
Q Consensus 537 Pt~~lid~~G~i~~~~~G~-~~~~~l~~~l 565 (1089)
|++++ +|+++ +.|. ...+++.+++
T Consensus 51 Pti~i---~G~~~--~~G~~~~~~~l~~~l 75 (76)
T TIGR00412 51 PGVAV---DGELV--IMGKIPSKEEIKEIL 75 (76)
T ss_pred CEEEE---CCEEE--EEeccCCHHHHHHHh
Confidence 99888 88877 4453 2335555443
|
This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin. |
| >COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.2e-05 Score=90.71 Aligned_cols=294 Identities=16% Similarity=0.206 Sum_probs=158.8
Q ss_pred CCCCCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEE------EEecCCCCCCCCCCCC---ccccCCcceeEEe
Q 001380 595 LFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIV------QIGSSGEEGLRDGSFD---DATFNRPQGLAYN 665 (1089)
Q Consensus 595 ~~~~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~------~i~~~g~~g~~dG~~~---~~~f~~P~gla~d 665 (1089)
.+++.|.+|++++..| +|.+.|+....+++.++...+.... .+-..+..|..|.... ...+..|.+++..
T Consensus 61 ~~a~gLe~p~~~~~lP-~G~~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~~~a~~ 139 (399)
T COG2133 61 VVAQGLEHPWGLARLP-DGVLLVTERPTGRLRLISDGGSASPPVSTVPIVLLRGQGGLLDIALSPDFAQGRLVYFGISEP 139 (399)
T ss_pred cccccccCchhheecC-CceEEEEccCCccEEEecCCCcccccccccceEEeccCCCccceEecccccccceeeeEEEee
Confidence 5567899999999998 5688888877687777653322111 1111112222221111 1225678888886
Q ss_pred eCCCEEEEEECCCCEEEEEECCCCeEEE---EecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcE---
Q 001380 666 AKKNLLYVADTENHALREIDFVNDTVRT---LAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQ--- 739 (1089)
Q Consensus 666 ~~g~~lyVaD~~n~~I~~~d~~~g~v~~---~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~--- 739 (1089)
. ++ +|++. ...+.+++....+++. +...- +... ..+-..|+++|+| +|||+-..+..
T Consensus 140 ~-~~-~~~~n--~~~~~~~~~g~~~l~~~~~i~~~l----------P~~~--~H~g~~l~f~pDG-~Lyvs~G~~~~~~~ 202 (399)
T COG2133 140 G-GG-LYVAN--RVAIGRLPGGDTKLSEPKVIFRGI----------PKGG--HHFGGRLVFGPDG-KLYVTTGSNGDPAL 202 (399)
T ss_pred c-CC-ceEEE--EEEEEEcCCCccccccccEEeecC----------CCCC--CcCcccEEECCCC-cEEEEeCCCCCccc
Confidence 3 33 67776 2344455511112221 11000 0000 2355679999999 99998765511
Q ss_pred EEEEECCCCeEEEEeCCCcccc-CCC--CCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeE-EEecCCC
Q 001380 740 IWEHSTVDGVTRAFSGDGYERN-LNG--SSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR-LLAGGDP 815 (1089)
Q Consensus 740 I~~~~~~~g~~~~~~g~g~~~~-~~g--~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~-~~~g~~~ 815 (1089)
.+.-....|++..+...+.... ..+ ..-...+..+|.|++++|..+.||+++.+...++ .. .++. .-.|...
T Consensus 203 aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~~---~~-Deln~i~~G~nY 278 (399)
T COG2133 203 AQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDALR---GP-DELNSIRPGKNY 278 (399)
T ss_pred ccCccccccceeeeccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCCCccc---Cc-ccccccccCCcc
Confidence 1111111222222221111100 000 1112356789999999999669999998876661 11 1221 2223333
Q ss_pred CCCCCccccCC-------CCCccccccc----------cCceEEEEcc-C------CcEEEEeCCCCEEEEEeCCCCeEE
Q 001380 816 IFPDNLFKFGD-------RDGMGSEVLL----------QHPLGVYCAK-N------GQIYVADSYNHKIKKLDPASNRVS 871 (1089)
Q Consensus 816 ~~~~~l~~~g~-------~dg~~~~~~l----------~~P~gva~~~-~------G~lyVaD~~n~~I~~~d~~~~~v~ 871 (1089)
.+|.- .||. .++. ..+.+ ..|.|+++-. + |.++|+....-.+.+.+++++...
T Consensus 279 GWP~~--~~G~~~~g~~~~~~~-~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~ 355 (399)
T COG2133 279 GWPYA--YFGQNYDGRAIPDGT-VVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKV 355 (399)
T ss_pred CCcee--ccCcccCccccCCCc-ccccccCCceeeccccccceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcce
Confidence 33221 2221 0110 00111 2358998863 2 689999988888888999888333
Q ss_pred EEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECC-CCEEEEEeCCC
Q 001380 872 TLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTN-NNIIRYLDLNK 922 (1089)
Q Consensus 872 t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~-n~~I~~~~~~~ 922 (1089)
+..++-.. + .-.+|.+|++.+||-|||+|-. +++|.++...+
T Consensus 356 ~~~~fl~~---d------~~gR~~dV~v~~DGallv~~D~~~g~i~Rv~~~~ 398 (399)
T COG2133 356 VLTGFLSG---D------LGGRPRDVAVAPDGALLVLTDQGDGRILRVSYAG 398 (399)
T ss_pred EEEEEEec---C------CCCcccceEECCCCeEEEeecCCCCeEEEecCCC
Confidence 33332110 0 1157999999999999999877 67999987654
|
|
| >COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.5e-08 Score=92.93 Aligned_cols=82 Identities=18% Similarity=0.231 Sum_probs=69.5
Q ss_pred HHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhH
Q 001380 173 LINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGV 252 (1089)
Q Consensus 173 lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di 252 (1089)
-|+.|.+.|+++||+|+.....++.-.+.+|+. . ++-+ .+-+-..|..+++++++.+++|.+|||..+|+
T Consensus 43 Gik~l~~~Gi~vAIITGr~s~ive~Ra~~LGI~-~----~~qG-----~~dK~~a~~~L~~~~~l~~e~~ayiGDD~~Dl 112 (170)
T COG1778 43 GIKLLLKSGIKVAIITGRDSPIVEKRAKDLGIK-H----LYQG-----ISDKLAAFEELLKKLNLDPEEVAYVGDDLVDL 112 (170)
T ss_pred HHHHHHHcCCeEEEEeCCCCHHHHHHHHHcCCc-e----eeec-----hHhHHHHHHHHHHHhCCCHHHhhhhcCccccH
Confidence 356688899999999999999999999999996 3 3322 13345889999999999999999999999999
Q ss_pred HHHHHcCCeEEE
Q 001380 253 QAAKAAQMRCIA 264 (1089)
Q Consensus 253 ~aA~~aG~~~i~ 264 (1089)
....+.|+.++.
T Consensus 113 pvm~~vGls~a~ 124 (170)
T COG1778 113 PVMEKVGLSVAV 124 (170)
T ss_pred HHHHHcCCcccc
Confidence 999999976544
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.9e-05 Score=91.16 Aligned_cols=217 Identities=16% Similarity=0.198 Sum_probs=131.8
Q ss_pred EEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC--CCCEEEEEECCCCeEEEEecCCCCC
Q 001380 624 RIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT--ENHALREIDFVNDTVRTLAGNGTKG 701 (1089)
Q Consensus 624 ~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~--~n~~I~~~d~~~g~v~~~ag~g~~~ 701 (1089)
+|...|.+|...+.+-.... .-....++|+|+.|+++.. +...|+.+|+.++..+.+.... +
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~--------------~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~--g 262 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPE--------------PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP--G 262 (448)
T ss_pred EEEEEeCCCCCceEeecCCC--------------cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC--C
Confidence 56666777664444332211 1245678899987665532 3458999999888776664211 0
Q ss_pred CCCCCCCcccccccCCceeEEEecCCCEEEEEEC--CCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEE
Q 001380 702 SDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA--GQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGIS 779 (1089)
Q Consensus 702 ~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~--~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~gla 779 (1089)
.-...+|+|+|+.|+++.. ++.+|+.+|..++..+.+.... ......+
T Consensus 263 ---------------~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~---------------~~~~~p~ 312 (448)
T PRK04792 263 ---------------INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHR---------------AIDTEPS 312 (448)
T ss_pred ---------------CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCC---------------CCccceE
Confidence 1124689999998877543 3457999999888776654211 1234567
Q ss_pred EcCCCCEEEEEeC--CCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEEEeCC
Q 001380 780 LSPDFMEIYVADS--ESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADSY 856 (1089)
Q Consensus 780 v~~~g~~lyvad~--~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~~ 856 (1089)
+++||+.|+++.. +...|+.++.+++..+.+.... ....+.++++||+ +|++...
T Consensus 313 wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g----------------------~~~~~~~~SpDG~~l~~~~~~ 370 (448)
T PRK04792 313 WHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEG----------------------EQNLGGSITPDGRSMIMVNRT 370 (448)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCC----------------------CCCcCeeECCCCCEEEEEEec
Confidence 8999988876543 3457888898877765542110 0112347788884 6555433
Q ss_pred --CCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEEEECCC--CEEEEEeCCCC
Q 001380 857 --NHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADTNN--NIIRYLDLNKE 923 (1089)
Q Consensus 857 --n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~~n--~~I~~~~~~~~ 923 (1089)
...|.++|.+++.+..+.... . -..| .+.++|+ |+++.... ..|..++.++.
T Consensus 371 ~g~~~I~~~dl~~g~~~~lt~~~-~-----------d~~p---s~spdG~~I~~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 371 NGKFNIARQDLETGAMQVLTSTR-L-----------DESP---SVAPNGTMVIYSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred CCceEEEEEECCCCCeEEccCCC-C-----------CCCc---eECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 347888999888876664210 0 0123 5677775 54443322 35788888776
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00016 Score=85.65 Aligned_cols=226 Identities=16% Similarity=0.200 Sum_probs=135.4
Q ss_pred EEEEeC-CCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC--CCCEEEEEECCCCeE
Q 001380 615 LFISDS-NHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT--ENHALREIDFVNDTV 691 (1089)
Q Consensus 615 L~vsd~-~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~--~n~~I~~~d~~~g~v 691 (1089)
.|+++. +..+|..+|.+|.....+..... .-...+++|+|+.|+++.. ++..|+.+|+.+|..
T Consensus 167 ayv~~~~~~~~L~~~D~dG~~~~~l~~~~~--------------~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~ 232 (427)
T PRK02889 167 AYVIKTGNRYQLQISDADGQNAQSALSSPE--------------PIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR 232 (427)
T ss_pred EEEEccCCccEEEEECCCCCCceEeccCCC--------------CcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE
Confidence 445533 23568888888776554432211 1135688999987766543 346799999998887
Q ss_pred EEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEE--CCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCC
Q 001380 692 RTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAM--AGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLN 769 (1089)
Q Consensus 692 ~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad--~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~ 769 (1089)
..+.... + .....+|+|+|+.|+++. .++.+||.+|..++..+.+....
T Consensus 233 ~~l~~~~--g---------------~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~------------ 283 (427)
T PRK02889 233 RVVANFK--G---------------SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSS------------ 283 (427)
T ss_pred EEeecCC--C---------------CccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCC------------
Confidence 7765211 1 123578999998887754 34567999998877665553211
Q ss_pred ccccCCceEEEcCCCCEEEEEeC--CCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccC
Q 001380 770 TSFAQPSGISLSPDFMEIYVADS--ESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKN 847 (1089)
Q Consensus 770 ~~~~~P~glav~~~g~~lyvad~--~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~ 847 (1089)
......++++||+.|+++.. +...|+.++..++..+.+... +. .....++++|
T Consensus 284 ---~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~-----------g~-----------~~~~~~~SpD 338 (427)
T PRK02889 284 ---GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFT-----------GS-----------YNTSPRISPD 338 (427)
T ss_pred ---CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecC-----------CC-----------CcCceEECCC
Confidence 01234578999987765532 345788888776655444211 00 0113468888
Q ss_pred Cc-EEEEeCC--CCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-E-EEEECCC-CEEEEEeCC
Q 001380 848 GQ-IYVADSY--NHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-L-FIADTNN-NIIRYLDLN 921 (1089)
Q Consensus 848 G~-lyVaD~~--n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-l-yVad~~n-~~I~~~~~~ 921 (1089)
|+ |+.+... ...|.++|..++....+.... . -...++.++|+ | |.++... ..+..++++
T Consensus 339 G~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~-------------~--~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~ 403 (427)
T PRK02889 339 GKLLAYISRVGGAFKLYVQDLATGQVTALTDTT-------------R--DESPSFAPNGRYILYATQQGGRSVLAAVSSD 403 (427)
T ss_pred CCEEEEEEccCCcEEEEEEECCCCCeEEccCCC-------------C--ccCceECCCCCEEEEEEecCCCEEEEEEECC
Confidence 85 4443322 347999998888777664210 0 12447778886 4 4443333 357777887
Q ss_pred CC
Q 001380 922 KE 923 (1089)
Q Consensus 922 ~~ 923 (1089)
+.
T Consensus 404 g~ 405 (427)
T PRK02889 404 GR 405 (427)
T ss_pred CC
Confidence 65
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.4e-05 Score=82.72 Aligned_cols=231 Identities=16% Similarity=0.222 Sum_probs=148.7
Q ss_pred eEEEeecCCeEEEEeCCCCEEEEEeCCC-CEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEE
Q 001380 605 KLAIDILNNRLFISDSNHNRIVVTDLDG-NFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALRE 683 (1089)
Q Consensus 605 ~vavd~~~g~L~vsd~~~~~I~~~~~~g-~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~ 683 (1089)
.+.+.+ +++.+++-..++.|.+++... +.+..+... -.....+.++++++ ++++...++.|+.
T Consensus 56 ~~~~~~-~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~--------------~~~i~~~~~~~~~~-~~~~~~~~~~i~~ 119 (289)
T cd00200 56 DVAASA-DGTYLASGSSDKTIRLWDLETGECVRTLTGH--------------TSYVSSVAFSPDGR-ILSSSSRDKTIKV 119 (289)
T ss_pred EEEECC-CCCEEEEEcCCCeEEEEEcCcccceEEEecc--------------CCcEEEEEEcCCCC-EEEEecCCCeEEE
Confidence 567776 444444444578899998874 444444322 12467888988877 6666666889999
Q ss_pred EECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeE-EEEeCCCccccC
Q 001380 684 IDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVT-RAFSGDGYERNL 762 (1089)
Q Consensus 684 ~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~-~~~~g~g~~~~~ 762 (1089)
++..++....... +. -.....+++++++ .++++....+.|..||...+.. ..+...
T Consensus 120 ~~~~~~~~~~~~~-~~---------------~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~------ 176 (289)
T cd00200 120 WDVETGKCLTTLR-GH---------------TDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKCVATLTGH------ 176 (289)
T ss_pred EECCCcEEEEEec-cC---------------CCcEEEEEEcCcC-CEEEEEcCCCcEEEEEccccccceeEecC------
Confidence 9988554333321 00 1256789999986 4444444567888888875443 333211
Q ss_pred CCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEE
Q 001380 763 NGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGV 842 (1089)
Q Consensus 763 ~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gv 842 (1089)
-.....++++++++.++++.. .+.|+.++...+....... +. -....++
T Consensus 177 ---------~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~~------------~~---------~~~i~~~ 225 (289)
T cd00200 177 ---------TGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTGKCLGTLR------------GH---------ENGVNSV 225 (289)
T ss_pred ---------ccccceEEECCCcCEEEEecC-CCcEEEEECCCCceecchh------------hc---------CCceEEE
Confidence 124568999999867777665 7889999987543321110 00 1146778
Q ss_pred EEccCCcEEEEeCCCCEEEEEeCCCCeE-EEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEe
Q 001380 843 YCAKNGQIYVADSYNHKIKKLDPASNRV-STLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLD 919 (1089)
Q Consensus 843 a~~~~G~lyVaD~~n~~I~~~d~~~~~v-~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~ 919 (1089)
++++++.++++...++.|+.+|..++.. ..+.+ .-....+++++++|+.+++-..++.|..++
T Consensus 226 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~--------------~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 226 AFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG--------------HTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccc--------------cCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 8998888888887789999999875443 33321 113467889998888777777788887653
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.0001 Score=76.75 Aligned_cols=245 Identities=18% Similarity=0.225 Sum_probs=172.2
Q ss_pred eEEEeecCCeEEEEeCCCCEEEEEeCC------CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCC
Q 001380 605 KLAIDILNNRLFISDSNHNRIVVTDLD------GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTEN 678 (1089)
Q Consensus 605 ~vavd~~~g~L~vsd~~~~~I~~~~~~------g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n 678 (1089)
.+++.+.+-.++++-+....|++++.+ |..++.+.+. -..-.++++.++|+ ..++-...
T Consensus 20 ~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GH--------------sH~v~dv~~s~dg~-~alS~swD 84 (315)
T KOG0279|consen 20 ALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGH--------------SHFVSDVVLSSDGN-FALSASWD 84 (315)
T ss_pred EEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeecc--------------ceEecceEEccCCc-eEEecccc
Confidence 345555556788887777788888654 3344444332 12458999999999 67777788
Q ss_pred CEEEEEECCCCe-EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCC
Q 001380 679 HALREIDFVNDT-VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDG 757 (1089)
Q Consensus 679 ~~I~~~d~~~g~-v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g 757 (1089)
..+|.+|+.+|+ ...+.|.+. .-.++++++++ .-.|+......|..||..++...++...+
T Consensus 85 ~~lrlWDl~~g~~t~~f~GH~~-----------------dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck~t~~~~~ 146 (315)
T KOG0279|consen 85 GTLRLWDLATGESTRRFVGHTK-----------------DVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCKYTIHEDS 146 (315)
T ss_pred ceEEEEEecCCcEEEEEEecCC-----------------ceEEEEecCCC-ceeecCCCcceeeeeeecccEEEEEecCC
Confidence 999999999865 344554442 45789999987 77788888889999998877776666432
Q ss_pred ccccCCCCCCCCccccCCceEEEcCCC-CEEEEEeCCCCeEEEEEcCCCCeE-EEecCCCCCCCCccccCCCCCcccccc
Q 001380 758 YERNLNGSSSLNTSFAQPSGISLSPDF-MEIYVADSESSSIRALNLKTGGSR-LLAGGDPIFPDNLFKFGDRDGMGSEVL 835 (1089)
Q Consensus 758 ~~~~~~g~~~~~~~~~~P~glav~~~g-~~lyvad~~~~~I~~~~~~~~~~~-~~~g~~~~~~~~l~~~g~~dg~~~~~~ 835 (1089)
. -.+-+.+.++|.. +-+++.-+....|+.+++.+-.++ .+.|.
T Consensus 147 ~-------------~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh---------------------- 191 (315)
T KOG0279|consen 147 H-------------REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGH---------------------- 191 (315)
T ss_pred C-------------cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccc----------------------
Confidence 1 2467789999975 466677778889999998865443 22221
Q ss_pred ccCceEEEEccCCcEEEEeCCCCEEEEEeCCC-CeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCE
Q 001380 836 LQHPLGVYCAKNGQIYVADSYNHKIKKLDPAS-NRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNI 914 (1089)
Q Consensus 836 l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~-~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~ 914 (1089)
-..-..++++|||.+..+.-..+++.-.|.+. +.+.++. .+..-..+|+.|+ +.+++-.-...
T Consensus 192 ~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~---------------a~~~v~sl~fspn-rywL~~at~~s 255 (315)
T KOG0279|consen 192 SGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE---------------AFDIVNSLCFSPN-RYWLCAATATS 255 (315)
T ss_pred cccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc---------------CCCeEeeEEecCC-ceeEeeccCCc
Confidence 11346789999999999988888998888754 3445543 2345678899885 57777666777
Q ss_pred EEEEeCCCCCceEEEEeecc
Q 001380 915 IRYLDLNKEEPELQTLELKG 934 (1089)
Q Consensus 915 I~~~~~~~~~~~~~~l~~~~ 934 (1089)
|+++++..+ ..+..+...+
T Consensus 256 IkIwdl~~~-~~v~~l~~d~ 274 (315)
T KOG0279|consen 256 IKIWDLESK-AVVEELKLDG 274 (315)
T ss_pred eEEEeccch-hhhhhccccc
Confidence 999999987 3455555443
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00016 Score=85.86 Aligned_cols=217 Identities=14% Similarity=0.157 Sum_probs=134.3
Q ss_pred EEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEE-EEEC-CCCEEEEEECCCCeEEEEecCCCCC
Q 001380 624 RIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLY-VADT-ENHALREIDFVNDTVRTLAGNGTKG 701 (1089)
Q Consensus 624 ~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~ly-VaD~-~n~~I~~~d~~~g~v~~~ag~g~~~ 701 (1089)
+|.+.|.+|.....+...+. .....+++|+|+.|+ +++. ++..|++++++++..+.+.... +
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~--------------~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~--g 243 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSRE--------------PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE--G 243 (430)
T ss_pred EEEEECCCCCCceEEecCCC--------------ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC--C
Confidence 67777888765554433211 125668889998764 4443 3468999999988877765211 1
Q ss_pred CCCCCCCcccccccCCceeEEEecCCCEEEEEE--CCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEE
Q 001380 702 SDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAM--AGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGIS 779 (1089)
Q Consensus 702 ~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad--~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~gla 779 (1089)
.....+|+|+|+.|+++. .++..|+.+|..++..+.+.... ......+
T Consensus 244 ---------------~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~---------------~~~~~~~ 293 (430)
T PRK00178 244 ---------------LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHP---------------AIDTEPF 293 (430)
T ss_pred ---------------CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCC---------------CCcCCeE
Confidence 112467999998887654 34558999999988877664211 0123457
Q ss_pred EcCCCCEEEEEeC--CCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEEEeCC
Q 001380 780 LSPDFMEIYVADS--ESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADSY 856 (1089)
Q Consensus 780 v~~~g~~lyvad~--~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~~ 856 (1089)
+++||+.|+++.. +...|+.++..++..+.+... +. .....+++++|+ |+++...
T Consensus 294 ~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~-----------~~-----------~~~~~~~Spdg~~i~~~~~~ 351 (430)
T PRK00178 294 WGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV-----------GN-----------YNARPRLSADGKTLVMVHRQ 351 (430)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC-----------CC-----------CccceEECCCCCEEEEEEcc
Confidence 8899987766543 234788888877766544211 00 011246788884 5555432
Q ss_pred --CCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEEEEC--CCCEEEEEeCCCC
Q 001380 857 --NHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADT--NNNIIRYLDLNKE 923 (1089)
Q Consensus 857 --n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~--~n~~I~~~~~~~~ 923 (1089)
...|..+|.+++....+...+ . -....+.++|+ |+++.. +..+|..++.++.
T Consensus 352 ~~~~~l~~~dl~tg~~~~lt~~~-------------~--~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 352 DGNFHVAAQDLQRGSVRILTDTS-------------L--DESPSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred CCceEEEEEECCCCCEEEccCCC-------------C--CCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 346889999888877764321 0 11236777886 444433 2356888888776
|
|
| >TIGR02187 GlrX_arch Glutaredoxin-like domain protein | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.5e-07 Score=97.24 Aligned_cols=94 Identities=20% Similarity=0.251 Sum_probs=74.1
Q ss_pred ccCCCEEEEEEec---CCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChh
Q 001380 450 DLKGKVVVLDFWT---YCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMN 526 (1089)
Q Consensus 450 ~~~gk~vll~Fwa---~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~ 526 (1089)
.+++.+.++.|.+ +||++|+.+.|.+.++.+++....+.++.+.. |.+.+
T Consensus 16 ~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~---------------------------~~~~~ 68 (215)
T TIGR02187 16 ELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDT---------------------------PEDKE 68 (215)
T ss_pred hcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCC---------------------------cccHH
Confidence 3455556666888 99999999999999999998543344555521 46779
Q ss_pred HHHHhCCCceeEEEEECCCCcEE-EEecCCCchhhHHHHHHHHHHH
Q 001380 527 LWRELGVNSWPTFAVVGPNGKLL-AQLAGEGHRKDLDDLVEAALLF 571 (1089)
Q Consensus 527 l~~~~~v~~~Pt~~lid~~G~i~-~~~~G~~~~~~l~~~l~~~l~~ 571 (1089)
+++.|+|.++||++++ ++|+.+ .++.|....+++..+|+.++..
T Consensus 69 l~~~~~V~~~Pt~~~f-~~g~~~~~~~~G~~~~~~l~~~i~~~~~~ 113 (215)
T TIGR02187 69 EAEKYGVERVPTTIIL-EEGKDGGIRYTGIPAGYEFAALIEDIVRV 113 (215)
T ss_pred HHHHcCCCccCEEEEE-eCCeeeEEEEeecCCHHHHHHHHHHHHHh
Confidence 9999999999999999 467776 4889988888999999877643
|
This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.9e-05 Score=87.29 Aligned_cols=226 Identities=15% Similarity=0.161 Sum_probs=141.3
Q ss_pred CCeEEEEe-CC--CCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCE-EEEEECC--CCEEEEEE
Q 001380 612 NNRLFISD-SN--HNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNL-LYVADTE--NHALREID 685 (1089)
Q Consensus 612 ~g~L~vsd-~~--~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~-lyVaD~~--n~~I~~~d 685 (1089)
...+||+. .+ ..+|++.|.||....++-..+. -....++|+|+. +|++... +..|+++|
T Consensus 155 ~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~~~---------------~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~d 219 (419)
T PRK04043 155 KRKVVFSKYTGPKKSNIVLADYTLTYQKVIVKGGL---------------NIFPKWANKEQTAFYYTSYGERKPTLYKYN 219 (419)
T ss_pred eeEEEEEEccCCCcceEEEECCCCCceeEEccCCC---------------eEeEEECCCCCcEEEEEEccCCCCEEEEEE
Confidence 34566665 23 4578888888876554433211 135667888874 6765443 57899999
Q ss_pred CCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC--CCcEEEEEECCCCeEEEEeCCCccccCC
Q 001380 686 FVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA--GQHQIWEHSTVDGVTRAFSGDGYERNLN 763 (1089)
Q Consensus 686 ~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~--~~~~I~~~~~~~g~~~~~~g~g~~~~~~ 763 (1089)
+.+|..+.+.... + ......|+|+|+.|+++.. ++.+||.++..++..+.+....
T Consensus 220 l~tg~~~~lt~~~--g---------------~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~------ 276 (419)
T PRK04043 220 LYTGKKEKIASSQ--G---------------MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYP------ 276 (419)
T ss_pred CCCCcEEEEecCC--C---------------cEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCC------
Confidence 9999888886311 1 1123458999988877653 4578999999888777664211
Q ss_pred CCCCCCccccCCceEEEcCCCCEEEEEeC--CCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceE
Q 001380 764 GSSSLNTSFAQPSGISLSPDFMEIYVADS--ESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLG 841 (1089)
Q Consensus 764 g~~~~~~~~~~P~glav~~~g~~lyvad~--~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~g 841 (1089)
. .-....++|||+.||++.. +...|++++.+++..+.+.-. |. . .
T Consensus 277 ------~---~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-----------g~---------~-~--- 323 (419)
T PRK04043 277 ------G---IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-----------GK---------N-N--- 323 (419)
T ss_pred ------C---ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-----------CC---------c-C---
Confidence 0 0112368999988877653 344799999988777544210 10 0 1
Q ss_pred EEEccCCc--EEEEeCC-------CCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-E-EEEEC
Q 001380 842 VYCAKNGQ--IYVADSY-------NHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-L-FIADT 910 (1089)
Q Consensus 842 va~~~~G~--lyVaD~~-------n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-l-yVad~ 910 (1089)
..++|||+ +|++... ...|..+|.+++....+...+ ..+ ...+.+||+ | |.++.
T Consensus 324 ~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~-------------~~~--~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 324 SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANG-------------VNQ--FPRFSSDGGSIMFIKYL 388 (419)
T ss_pred ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCC-------------CcC--CeEECCCCCEEEEEEcc
Confidence 26788885 3444332 158999999888877775321 111 246778886 4 44443
Q ss_pred CC-CEEEEEeCCCC
Q 001380 911 NN-NIIRYLDLNKE 923 (1089)
Q Consensus 911 ~n-~~I~~~~~~~~ 923 (1089)
.. ..|..+++++.
T Consensus 389 ~~~~~L~~~~l~g~ 402 (419)
T PRK04043 389 GNQSALGIIRLNYN 402 (419)
T ss_pred CCcEEEEEEecCCC
Confidence 33 45889999887
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.3e-05 Score=89.46 Aligned_cols=174 Identities=17% Similarity=0.292 Sum_probs=105.9
Q ss_pred cCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecC------CCE
Q 001380 656 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPI------NEK 729 (1089)
Q Consensus 656 f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~------g~~ 729 (1089)
|..|.+|++.|+|+ +||+....++|++++..++..+.+.+....-. ......+.|||++|+ +++
T Consensus 29 L~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~---------~~ge~GLlglal~PdF~~~~~n~~ 98 (454)
T TIGR03606 29 LNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTLPEIVN---------DAQHNGLLGLALHPDFMQEKGNPY 98 (454)
T ss_pred CCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecCCceec---------cCCCCceeeEEECCCccccCCCcE
Confidence 67999999999997 99999877899999877665554443221100 001346889999975 358
Q ss_pred EEEEECC---------CcEEEEEECCCC------eEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCC
Q 001380 730 VYIAMAG---------QHQIWEHSTVDG------VTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSES 794 (1089)
Q Consensus 730 lyvad~~---------~~~I~~~~~~~g------~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~ 794 (1089)
||++-+. ..+|.++..... ....+.+. .. .....-..|++++|| .|||+--..
T Consensus 99 lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~l---------P~--~~~H~GgrI~FgPDG-~LYVs~GD~ 166 (454)
T TIGR03606 99 VYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGL---------PA--GNDHNGGRLVFGPDG-KIYYTIGEQ 166 (454)
T ss_pred EEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecC---------CC--CCCcCCceEEECCCC-cEEEEECCC
Confidence 9998522 457877765421 11122211 00 112345578999998 899964332
Q ss_pred --------------------------------CeEEEEEcCCCCeEEEecCCCCCC---CCccccCCCCCccccccccCc
Q 001380 795 --------------------------------SSIRALNLKTGGSRLLAGGDPIFP---DNLFKFGDRDGMGSEVLLQHP 839 (1089)
Q Consensus 795 --------------------------------~~I~~~~~~~~~~~~~~g~~~~~~---~~l~~~g~~dg~~~~~~l~~P 839 (1089)
++|.|+++++. +..++|... ..++++| +.+|
T Consensus 167 g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGs----iP~dNPf~~g~~~eIyA~G----------~RNp 232 (454)
T TIGR03606 167 GRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGS----IPKDNPSINGVVSHIFTYG----------HRNP 232 (454)
T ss_pred CCCCcccccCcchhccccccccccccCcccCceEEEEEcCCCC----CCCCCCccCCCcceEEEEe----------cccc
Confidence 24555555431 111112111 1244555 4489
Q ss_pred eEEEEccCCcEEEEeCCC---CEEEEEeC
Q 001380 840 LGVYCAKNGQIYVADSYN---HKIKKLDP 865 (1089)
Q Consensus 840 ~gva~~~~G~lyVaD~~n---~~I~~~d~ 865 (1089)
.|++++++|.||++|.+. ..|.++.+
T Consensus 233 ~Gla~dp~G~Lw~~e~Gp~~~DEiN~I~~ 261 (454)
T TIGR03606 233 QGLAFTPDGTLYASEQGPNSDDELNIIVK 261 (454)
T ss_pred ceeEECCCCCEEEEecCCCCCcEEEEecc
Confidence 999999999999999764 45555543
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic | Back alignment and domain information |
|---|
Probab=98.55 E-value=2e-07 Score=111.91 Aligned_cols=90 Identities=18% Similarity=0.397 Sum_probs=76.5
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCC--EEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMP--FTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~--v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
++++++|+|||+||++|+.+.|.+.++++++.+.+ +.++.|.+ +.+.++++
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~---------------------------~~~~~l~~ 69 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDA---------------------------TEEKDLAQ 69 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEEC---------------------------CCcHHHHH
Confidence 56889999999999999999999999999887544 88888854 44568999
Q ss_pred HhCCCceeEEEEECCCCcE-EEEecCCCchhhHHHHHHHHH
Q 001380 530 ELGVNSWPTFAVVGPNGKL-LAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i-~~~~~G~~~~~~l~~~l~~~l 569 (1089)
.|+|.++|+++++ ++|+. +..+.|..+.+.+.+++...+
T Consensus 70 ~~~i~~~Pt~~~~-~~g~~~~~~~~g~~~~~~l~~~i~~~~ 109 (462)
T TIGR01130 70 KYGVSGYPTLKIF-RNGEDSVSDYNGPRDADGIVKYMKKQS 109 (462)
T ss_pred hCCCccccEEEEE-eCCccceeEecCCCCHHHHHHHHHHhc
Confidence 9999999999999 67776 778899988888888887655
|
Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). |
| >PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=8.2e-07 Score=98.38 Aligned_cols=74 Identities=11% Similarity=0.084 Sum_probs=57.5
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCc--EEecCcccCCHHHHHhc
Q 001380 220 NLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPS--LIRKEIGSVSLNDILTG 297 (1089)
Q Consensus 220 ~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d--~vi~dl~el~i~~ll~~ 297 (1089)
.+--|...++.+++++|++++++++|||+.||+.|-+.+| ..|..+...+++++. ++ .++.+-.+=.+...|+.
T Consensus 185 ~g~sKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag---~~vAm~Na~~~vK~~-A~~~~v~~~n~edGva~~l~~ 260 (272)
T PRK15126 185 VGCNKGAALAVLSQHLGLSLADCMAFGDAMNDREMLGSVG---RGFIMGNAMPQLRAE-LPHLPVIGHCRNQAVSHYLTH 260 (272)
T ss_pred CCCChHHHHHHHHHHhCCCHHHeEEecCCHHHHHHHHHcC---CceeccCChHHHHHh-CCCCeecCCCcchHHHHHHHH
Confidence 3456788899999999999999999999999999999999 455566667777663 44 37777666556666644
|
|
| >TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.8e-06 Score=91.09 Aligned_cols=100 Identities=10% Similarity=0.019 Sum_probs=69.4
Q ss_pred CCCccHHHHHH-HHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcC-CccC-CC---C---CHHHHHHHHHHc
Q 001380 165 IGFPGALELIN-QCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSAD-AFEN-LK---P---APDIFLSASKIL 235 (1089)
Q Consensus 165 ~~~pG~~~lL~-~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~-~~~~-~K---P---~~~~~~~~l~~l 235 (1089)
.++||+.++|+ .++++|++++|+||.....++.+.+..++. . .+.+++.+ ++.. ++ + ..+=..++.+.+
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~~-~-~~~~i~t~le~~~gg~~~g~~c~g~~Kv~rl~~~~ 171 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDSNFI-H-RLNLIASQIERGNGGWVLPLRCLGHEKVAQLEQKI 171 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhcccc-c-cCcEEEEEeEEeCCceEcCccCCChHHHHHHHHHh
Confidence 57999999996 789899999999999999999999887662 2 23444443 1100 11 0 011122233344
Q ss_pred CCCCCcEEEEcCChhhHHHHHHcCCeEEEEcC
Q 001380 236 NVPTSECIVIEDALAGVQAAKAAQMRCIAVTT 267 (1089)
Q Consensus 236 gv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~ 267 (1089)
+.+.+.+.+.||+.+|+.+...+| ..+.|+.
T Consensus 172 ~~~~~~~~aYsDS~~D~pmL~~a~-~~~~Vnp 202 (210)
T TIGR01545 172 GSPLKLYSGYSDSKQDNPLLAFCE-HRWRVSK 202 (210)
T ss_pred CCChhheEEecCCcccHHHHHhCC-CcEEECc
Confidence 556678899999999999999999 4466654
|
The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene. |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00018 Score=85.13 Aligned_cols=218 Identities=17% Similarity=0.212 Sum_probs=134.9
Q ss_pred CEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEE-E-CCCCEEEEEECCCCeEEEEecCCCC
Q 001380 623 NRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVA-D-TENHALREIDFVNDTVRTLAGNGTK 700 (1089)
Q Consensus 623 ~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVa-D-~~n~~I~~~d~~~g~v~~~ag~g~~ 700 (1089)
.+|.+.|.+|...+.+..... .-...+++|+|+.|.++ . .+...|+.+++.+|..+.+.....
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~--------------~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~- 243 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQ--------------PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR- 243 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCC--------------ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCC-
Confidence 467777877765554433211 23577899999766544 3 245689999998887776652110
Q ss_pred CCCCCCCCcccccccCCceeEEEecCCCEEEEEEC--CCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceE
Q 001380 701 GSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA--GQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGI 778 (1089)
Q Consensus 701 ~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~--~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~gl 778 (1089)
....++|+|+|..|+++.. ++.+||.+|..++.++.+.... ......
T Consensus 244 ----------------~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~---------------~~~~~~ 292 (429)
T PRK03629 244 ----------------HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR---------------SNNTEP 292 (429)
T ss_pred ----------------CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCC---------------CCcCce
Confidence 1124689999998888643 4457999999988777664211 123467
Q ss_pred EEcCCCCEEE-EEeC-CCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEEEeC
Q 001380 779 SLSPDFMEIY-VADS-ESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADS 855 (1089)
Q Consensus 779 av~~~g~~ly-vad~-~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~ 855 (1089)
+++|||+.|+ +++. +...|+.++++++..+.+.... ......++++||+ |+++..
T Consensus 293 ~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~----------------------~~~~~~~~SpDG~~Ia~~~~ 350 (429)
T PRK03629 293 TWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEG----------------------SQNQDADVSSDGKFMVMVSS 350 (429)
T ss_pred EECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCC----------------------CCccCEEECCCCCEEEEEEc
Confidence 8999998774 4443 2347888888877665542210 0122456788885 444433
Q ss_pred --CCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEEEECC--CCEEEEEeCCCC
Q 001380 856 --YNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADTN--NNIIRYLDLNKE 923 (1089)
Q Consensus 856 --~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~~--n~~I~~~~~~~~ 923 (1089)
....|..+|.+++....+.... .. ....+.+||+ |+++... ...+..+++++.
T Consensus 351 ~~g~~~I~~~dl~~g~~~~Lt~~~-------------~~--~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 351 NGGQQHIAKQDLATGGVQVLTDTF-------------LD--ETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR 408 (429)
T ss_pred cCCCceEEEEECCCCCeEEeCCCC-------------CC--CCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 2356888999888877775311 00 1235678886 4444332 235778888776
|
|
| >cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.2e-07 Score=86.31 Aligned_cols=88 Identities=20% Similarity=0.255 Sum_probs=70.7
Q ss_pred CCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhC
Q 001380 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELG 532 (1089)
Q Consensus 453 gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~ 532 (1089)
|+++++.||++||++|....|.+.+++++|+++ +.++.|.. |....+++.||
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~---------------------------~~~~~~~~~~~ 63 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK-LLFVVVDA---------------------------DDFGRHLEYFG 63 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe-EEEEEEch---------------------------HhhHHHHHHcC
Confidence 789999999999999999999999999999865 88888843 34457899999
Q ss_pred CC--ceeEEEEECCC-CcEEEEecCCCchhhHHHHHHHH
Q 001380 533 VN--SWPTFAVVGPN-GKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 533 v~--~~Pt~~lid~~-G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
+. .+|++++++.+ |+......+..+.+.+.++|+..
T Consensus 64 i~~~~~P~~~~~~~~~~~k~~~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 64 LKEEDLPVIAIINLSDGKKYLMPEEELTAESLEEFVEDF 102 (103)
T ss_pred CChhhCCEEEEEecccccccCCCccccCHHHHHHHHHhh
Confidence 99 99999999763 44433344445788888887654
|
Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w |
| >PRK10513 sugar phosphate phosphatase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.2e-06 Score=97.07 Aligned_cols=73 Identities=14% Similarity=0.055 Sum_probs=57.9
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhc
Q 001380 221 LKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTG 297 (1089)
Q Consensus 221 ~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~ 297 (1089)
+-.|...++.+++++|++++++++|||+.||+.|.+.+|. .|..+...+++++ .+++|..+-.+=.+..+|..
T Consensus 194 gvsKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~---~vAm~NA~~~vK~-~A~~vt~~n~~dGva~~i~~ 266 (270)
T PRK10513 194 RVNKGTGVKSLAEHLGIKPEEVMAIGDQENDIAMIEYAGV---GVAMGNAIPSVKE-VAQFVTKSNLEDGVAFAIEK 266 (270)
T ss_pred CCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhCCc---eEEecCccHHHHH-hcCeeccCCCcchHHHHHHH
Confidence 3445667889999999999999999999999999999995 4555656677766 58999888777666666543
|
|
| >PTZ00062 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.1e-07 Score=95.00 Aligned_cols=75 Identities=15% Similarity=0.139 Sum_probs=62.8
Q ss_pred CEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhCC
Q 001380 454 KVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGV 533 (1089)
Q Consensus 454 k~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v 533 (1089)
+.+|++|||+||++|+.+.|.|.+|+++|++ +.++-|. .+ |+|
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~--~~F~~V~-----------------------------~d------~~V 60 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPS--LEFYVVN-----------------------------LA------DAN 60 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCCC--cEEEEEc-----------------------------cc------cCc
Confidence 5578999999999999999999999999974 7888882 22 999
Q ss_pred CceeEEEEECCCCcEEEEecCCCchhhHHHHHHH
Q 001380 534 NSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEA 567 (1089)
Q Consensus 534 ~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~ 567 (1089)
.++|+++++ ++|+.+.++.|. ++..+...+..
T Consensus 61 ~~vPtfv~~-~~g~~i~r~~G~-~~~~~~~~~~~ 92 (204)
T PTZ00062 61 NEYGVFEFY-QNSQLINSLEGC-NTSTLVSFIRG 92 (204)
T ss_pred ccceEEEEE-ECCEEEeeeeCC-CHHHHHHHHHH
Confidence 999999999 799999999886 35556655544
|
|
| >TIGR01684 viral_ppase viral phosphatase | Back alignment and domain information |
|---|
Probab=98.52 E-value=3e-07 Score=98.44 Aligned_cols=61 Identities=20% Similarity=0.187 Sum_probs=56.9
Q ss_pred CccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHH
Q 001380 167 FPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIF 228 (1089)
Q Consensus 167 ~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~ 228 (1089)
-||+.++|++|+++|++++|+|++.++++...++++|+. .+|+.|+++++....||.++..
T Consensus 148 dPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd-~YFdvIIs~Gdv~~~kp~~e~~ 208 (301)
T TIGR01684 148 DPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLD-RYFDIIISGGHKAEEYSTMSTE 208 (301)
T ss_pred CHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCC-cccCEEEECCccccCCCCcccc
Confidence 389999999999999999999999999999999999997 9999999999999999988654
|
These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade. |
| >KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1e-06 Score=84.45 Aligned_cols=126 Identities=15% Similarity=0.231 Sum_probs=96.4
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEe--cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCC-C
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFW--TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFD-N 499 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fw--a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~-~ 499 (1089)
....|+.+|.|.... .-..+.+ .|+.|.-+.|-|- +...|.|..|+-.+.+++.+|..+++..|+.|++..+ +
T Consensus 5 ~l~lgd~~PNfea~T---t~g~i~f-hd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~vesH 80 (224)
T KOG0854|consen 5 RLRLGDTVPNFEADT---TVGKIKF-HDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVESH 80 (224)
T ss_pred cccccCcCCCccccc---cccceeh-hhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHHH
Confidence 456899999999632 4456888 7887765444444 7889999999999999999999999999999985321 2
Q ss_pred hhcHHHHHHHHHHcC--CccceeecCChhHHHHhCCC------------ceeEEEEECCCCcEEEEe
Q 001380 500 EKDLEAIRNAVLRYG--ISHPVVNDGDMNLWRELGVN------------SWPTFAVVGPNGKLLAQL 552 (1089)
Q Consensus 500 ~~~~~~~~~~~~~~~--~~~~v~~d~~~~l~~~~~v~------------~~Pt~~lid~~G~i~~~~ 552 (1089)
.+-.+.++++.+... ++||++.|+..+++-.|+.- .....|+||++.+++..+
T Consensus 81 ~~Wi~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~ 147 (224)
T KOG0854|consen 81 KDWIKDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSF 147 (224)
T ss_pred HHHHHHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEEE
Confidence 233344455555555 88999999999999988741 256889999999998774
|
|
| >PTZ00102 disulphide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.8e-07 Score=109.03 Aligned_cols=89 Identities=19% Similarity=0.435 Sum_probs=74.2
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCC--CEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDM--PFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~--~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
+++.+||+|||+||++|+.+.|.+.++++++++. ++.+..|.+ +.+..+++
T Consensus 48 ~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~---------------------------~~~~~l~~ 100 (477)
T PTZ00102 48 ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDA---------------------------TEEMELAQ 100 (477)
T ss_pred cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEEC---------------------------CCCHHHHH
Confidence 5789999999999999999999999999887643 477777743 45678999
Q ss_pred HhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 530 ELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
+|+|.++|+++++.. |+.+ .+.|..+.+.+.+++.+.+
T Consensus 101 ~~~i~~~Pt~~~~~~-g~~~-~y~g~~~~~~l~~~l~~~~ 138 (477)
T PTZ00102 101 EFGVRGYPTIKFFNK-GNPV-NYSGGRTADGIVSWIKKLT 138 (477)
T ss_pred hcCCCcccEEEEEEC-CceE-EecCCCCHHHHHHHHHHhh
Confidence 999999999999964 4544 7889889998988887755
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.0002 Score=78.21 Aligned_cols=235 Identities=19% Similarity=0.267 Sum_probs=149.0
Q ss_pred CceEEEeecCCeEEEEeCCCCEEEEEeCCC-CEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEE
Q 001380 603 PGKLAIDILNNRLFISDSNHNRIVVTDLDG-NFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHAL 681 (1089)
Q Consensus 603 P~~vavd~~~g~L~vsd~~~~~I~~~~~~g-~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I 681 (1089)
...+++++ +++++++-..++.|..++.+. +....+... . .....+.+.++++.++++. .++.|
T Consensus 12 i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~-~-------------~~i~~~~~~~~~~~l~~~~-~~~~i 75 (289)
T cd00200 12 VTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGH-T-------------GPVRDVAASADGTYLASGS-SDKTI 75 (289)
T ss_pred EEEEEEcC-CCCEEEEeecCcEEEEEEeeCCCcEEEEecC-C-------------cceeEEEECCCCCEEEEEc-CCCeE
Confidence 34677887 445555555578899998763 333333222 1 1225888888887555554 47889
Q ss_pred EEEECCCC-eEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEE-EEeCCCcc
Q 001380 682 REIDFVND-TVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTR-AFSGDGYE 759 (1089)
Q Consensus 682 ~~~d~~~g-~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~-~~~g~g~~ 759 (1089)
+.++..++ .+..+.+.. .....+.+++++ .++++....+.|..|+..++... .+.+
T Consensus 76 ~i~~~~~~~~~~~~~~~~-----------------~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~---- 133 (289)
T cd00200 76 RLWDLETGECVRTLTGHT-----------------SYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRG---- 133 (289)
T ss_pred EEEEcCcccceEEEeccC-----------------CcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEecc----
Confidence 99998774 333333111 246788999875 56666656789999998755433 3321
Q ss_pred ccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeE-EEecCCCCCCCCccccCCCCCccccccccC
Q 001380 760 RNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR-LLAGGDPIFPDNLFKFGDRDGMGSEVLLQH 838 (1089)
Q Consensus 760 ~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~-~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~ 838 (1089)
.-.....+++++++ .++++....+.|+.++...+... .+... -..
T Consensus 134 -----------~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~----------------------~~~ 179 (289)
T cd00200 134 -----------HTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKCVATLTGH----------------------TGE 179 (289)
T ss_pred -----------CCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEccccccceeEecC----------------------ccc
Confidence 11246789999986 45555555788999988744322 11110 113
Q ss_pred ceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEe-ccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEE
Q 001380 839 PLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLA-GIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRY 917 (1089)
Q Consensus 839 P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~-g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~ 917 (1089)
...++++++|+.+++-..++.|..+|..++...... + .-.....+++++++.++++...++.|..
T Consensus 180 i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~--------------~~~~i~~~~~~~~~~~~~~~~~~~~i~i 245 (289)
T cd00200 180 VNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG--------------HENGVNSVAFSPDGYLLASGSEDGTIRV 245 (289)
T ss_pred cceEEECCCcCEEEEecCCCcEEEEECCCCceecchhh--------------cCCceEEEEEcCCCcEEEEEcCCCcEEE
Confidence 567889999854444444889999998754433221 1 1224678889888888888877899999
Q ss_pred EeCCCC
Q 001380 918 LDLNKE 923 (1089)
Q Consensus 918 ~~~~~~ 923 (1089)
++....
T Consensus 246 ~~~~~~ 251 (289)
T cd00200 246 WDLRTG 251 (289)
T ss_pred EEcCCc
Confidence 998764
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.9e-05 Score=80.36 Aligned_cols=221 Identities=18% Similarity=0.285 Sum_probs=139.6
Q ss_pred CcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC
Q 001380 658 RPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ 737 (1089)
Q Consensus 658 ~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~ 737 (1089)
+-.+|+++|+.+.||..-..--.|..+++++..++++.-.| +..|-+|++-..| .+.+++...
T Consensus 87 nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g----------------~~DpE~Ieyig~n-~fvi~dER~ 149 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG----------------FSDPETIEYIGGN-QFVIVDERD 149 (316)
T ss_pred cccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc----------------cCChhHeEEecCC-EEEEEehhc
Confidence 46899999999999998766679999999999999997555 5688899998644 777888888
Q ss_pred cEEEEEECCCC-eEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCC-CeEEEEEcCCCCeEEEecCCC
Q 001380 738 HQIWEHSTVDG-VTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSES-SSIRALNLKTGGSRLLAGGDP 815 (1089)
Q Consensus 738 ~~I~~~~~~~g-~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~-~~I~~~~~~~~~~~~~~g~~~ 815 (1089)
.+++.+..+.+ .+..+.... .. .......+.+| .|+|.++.++.+||+-..+ -.|+.++............++
T Consensus 150 ~~l~~~~vd~~t~~~~~~~~~-i~-L~~~~k~N~Gf---EGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~ 224 (316)
T COG3204 150 RALYLFTVDADTTVISAKVQK-IP-LGTTNKKNKGF---EGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDP 224 (316)
T ss_pred ceEEEEEEcCCccEEeccceE-Ee-ccccCCCCcCc---eeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCc
Confidence 88877655433 222111100 00 00000112444 4999999998999986432 244444422111111111110
Q ss_pred CCCCCccccCCCCCccccccccCceEEEEcc-CCcEEEEeCCCCEEEEEeCCCCeEEEEecc-CCCCCCCCcccccccCC
Q 001380 816 IFPDNLFKFGDRDGMGSEVLLQHPLGVYCAK-NGQIYVADSYNHKIKKLDPASNRVSTLAGI-GKAGFKDGAALAAQLSE 893 (1089)
Q Consensus 816 ~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~-~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~-g~~g~~~g~~~~~~l~~ 893 (1089)
....+..+..-.|+.+++ .|+++|-..-.+++..+|.+++.+..+.-+ |..| .......
T Consensus 225 -------------~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~g------L~~dipq 285 (316)
T COG3204 225 -------------TADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHG------LSSDIPQ 285 (316)
T ss_pred -------------ccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCC------CcccCCC
Confidence 000112234456778875 578888877889999999988766665533 2222 3345778
Q ss_pred CceEEEccCCcEEEEECCCCEEEEEeC
Q 001380 894 PAGIIEAQNGNLFIADTNNNIIRYLDL 920 (1089)
Q Consensus 894 P~gi~vd~~G~lyVad~~n~~I~~~~~ 920 (1089)
|.||++|.+|+|||+.-- |...+|.+
T Consensus 286 aEGiamDd~g~lYIvSEP-nlfy~F~~ 311 (316)
T COG3204 286 AEGIAMDDDGNLYIVSEP-NLFYRFTP 311 (316)
T ss_pred cceeEECCCCCEEEEecC-Ccceeccc
Confidence 999999999999998643 34444443
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00033 Score=83.00 Aligned_cols=219 Identities=17% Similarity=0.232 Sum_probs=129.6
Q ss_pred CEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC--CCCEEEEEECCCCeEEEEecCCCC
Q 001380 623 NRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT--ENHALREIDFVNDTVRTLAGNGTK 700 (1089)
Q Consensus 623 ~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~--~n~~I~~~d~~~g~v~~~ag~g~~ 700 (1089)
.+|.++|.+|.....+..... .-..++++|+|+.|+.+.. ++..|+.+|+.++..+.+....
T Consensus 184 ~~i~i~d~dg~~~~~lt~~~~--------------~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~-- 247 (429)
T PRK01742 184 YEVRVADYDGFNQFIVNRSSQ--------------PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR-- 247 (429)
T ss_pred EEEEEECCCCCCceEeccCCC--------------ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC--
Confidence 477778888765554433211 2356789999987665532 3468999999888766664211
Q ss_pred CCCCCCCCcccccccCCceeEEEecCCCEEEEEE--CCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceE
Q 001380 701 GSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAM--AGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGI 778 (1089)
Q Consensus 701 ~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad--~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~gl 778 (1089)
+ .-..++|+|+|+.|+++. .++-+||.+|..++..+.+.+.. ......
T Consensus 248 g---------------~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~---------------~~~~~~ 297 (429)
T PRK01742 248 G---------------HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGA---------------GNNTEP 297 (429)
T ss_pred C---------------ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCC---------------CCcCCE
Confidence 1 112478999998888764 33457899998888776664311 123467
Q ss_pred EEcCCCCEEEEEeC--CCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEEEeC
Q 001380 779 SLSPDFMEIYVADS--ESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADS 855 (1089)
Q Consensus 779 av~~~g~~lyvad~--~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~ 855 (1089)
+++|||+.|+++.. +.-.|+.++..++....+ +.. + ...++++||+ ++++..
T Consensus 298 ~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~--------------~----------~~~~~SpDG~~ia~~~~ 352 (429)
T PRK01742 298 SWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGR--------------G----------YSAQISADGKTLVMING 352 (429)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCC--------------C----------CCccCCCCCCEEEEEcC
Confidence 89999987776543 344667777665544333 110 0 1245678885 444432
Q ss_pred CCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCC---EEEEEeCCCCCceEEEEe
Q 001380 856 YNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNN---IIRYLDLNKEEPELQTLE 931 (1089)
Q Consensus 856 ~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~---~I~~~~~~~~~~~~~~l~ 931 (1089)
..|.++|..++....+.... .-..+++.++|+.++..+..+ .+..++.++. .+..+.
T Consensus 353 --~~i~~~Dl~~g~~~~lt~~~---------------~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~--~~~~l~ 412 (429)
T PRK01742 353 --DNVVKQDLTSGSTEVLSSTF---------------LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGR--FKARLP 412 (429)
T ss_pred --CCEEEEECCCCCeEEecCCC---------------CCCCceECCCCCEEEEEEcCCCceEEEEEECCCC--ceEEcc
Confidence 56777998888766553210 012456788886333322222 2344455665 445554
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00016 Score=85.46 Aligned_cols=219 Identities=17% Similarity=0.154 Sum_probs=131.9
Q ss_pred CCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC--CCEEEEEECCCCeEEEEecCCC
Q 001380 622 HNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE--NHALREIDFVNDTVRTLAGNGT 699 (1089)
Q Consensus 622 ~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~--n~~I~~~d~~~g~v~~~ag~g~ 699 (1089)
...|+..|.+|...+.+-..+. .....+++|+|+.|+++... .+.|+.++..++....+.....
T Consensus 169 ~~~l~~~d~~g~~~~~l~~~~~--------------~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~ 234 (417)
T TIGR02800 169 RYELQVADYDGANPQTITRSRE--------------PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPG 234 (417)
T ss_pred cceEEEEcCCCCCCEEeecCCC--------------ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCC
Confidence 4457777777655544433211 12345688899877776543 3689999998887766653210
Q ss_pred CCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC--CCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCce
Q 001380 700 KGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA--GQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSG 777 (1089)
Q Consensus 700 ~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~--~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~g 777 (1089)
....++|+|+|+.|+++.. ++..|+.++..++....+.... .....
T Consensus 235 -----------------~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~---------------~~~~~ 282 (417)
T TIGR02800 235 -----------------MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGP---------------GIDTE 282 (417)
T ss_pred -----------------CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCC---------------CCCCC
Confidence 1234789999988887654 3457999998887766554211 01123
Q ss_pred EEEcCCCCEEEEEeC--CCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEEEe
Q 001380 778 ISLSPDFMEIYVADS--ESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVAD 854 (1089)
Q Consensus 778 lav~~~g~~lyvad~--~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD 854 (1089)
.+++++|+.|+++.. +...|+.++..++....+.... .....++++++|+ ++++.
T Consensus 283 ~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~----------------------~~~~~~~~spdg~~i~~~~ 340 (417)
T TIGR02800 283 PSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRG----------------------GYNASPSWSPDGDLIAFVH 340 (417)
T ss_pred EEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC----------------------CCccCeEECCCCCEEEEEE
Confidence 467888877765532 2347899998876665443211 1223467888885 55554
Q ss_pred CC--CCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEEEECCC--CEEEEEeCCCC
Q 001380 855 SY--NHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADTNN--NIIRYLDLNKE 923 (1089)
Q Consensus 855 ~~--n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~~n--~~I~~~~~~~~ 923 (1089)
.. ..+|..+|..++....+.... .....++.++|+ |+++...+ ..+..++.++.
T Consensus 341 ~~~~~~~i~~~d~~~~~~~~l~~~~---------------~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~ 399 (417)
T TIGR02800 341 REGGGFNIAVMDLDGGGERVLTDTG---------------LDESPSFAPNGRMILYATTRGGRGVLGLVSTDGR 399 (417)
T ss_pred ccCCceEEEEEeCCCCCeEEccCCC---------------CCCCceECCCCCEEEEEEeCCCcEEEEEEECCCc
Confidence 33 348899998887766654211 012335666775 55544332 35666776665
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00039 Score=81.33 Aligned_cols=206 Identities=17% Similarity=0.222 Sum_probs=149.6
Q ss_pred cCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEE-EEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEE
Q 001380 656 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVR-TLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAM 734 (1089)
Q Consensus 656 f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~-~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad 734 (1089)
+.+-..++++|||. +.++....++|+++|...|+-. |+... -+.-.++.|...| +..++.
T Consensus 350 ~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~SgfC~vTFteH-----------------ts~Vt~v~f~~~g-~~llss 410 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSGFCFVTFTEH-----------------TSGVTAVQFTARG-NVLLSS 410 (893)
T ss_pred ccceeeEEECCCCc-EEEeccCCCcEEEEeccCceEEEEeccC-----------------CCceEEEEEEecC-CEEEEe
Confidence 56778999999998 7888888999999999888744 44321 2356788999888 666676
Q ss_pred CCCcEEEEEECCCCeE-EEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeE-EEec
Q 001380 735 AGQHQIWEHSTVDGVT-RAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR-LLAG 812 (1089)
Q Consensus 735 ~~~~~I~~~~~~~g~~-~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~-~~~g 812 (1089)
.-.+.|+.||..-... ++|.. ..-.|-+.||+||.|..+...+..+-.|.+++..+|... ++.|
T Consensus 411 SLDGtVRAwDlkRYrNfRTft~--------------P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG 476 (893)
T KOG0291|consen 411 SLDGTVRAWDLKRYRNFRTFTS--------------PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG 476 (893)
T ss_pred ecCCeEEeeeecccceeeeecC--------------CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcC
Confidence 7788999999765433 33332 112355799999999677777777779999999988765 3433
Q ss_pred CCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeC--CCCeEEEEeccCCCCCCCCcccccc
Q 001380 813 GDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDP--ASNRVSTLAGIGKAGFKDGAALAAQ 890 (1089)
Q Consensus 813 ~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~--~~~~v~t~~g~g~~g~~~g~~~~~~ 890 (1089)
+. | --.+++++++|++.++-++...|+..|. ..+++.++.-.
T Consensus 477 HE--------------g--------PVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~-------------- 520 (893)
T KOG0291|consen 477 HE--------------G--------PVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIR-------------- 520 (893)
T ss_pred CC--------------C--------cceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeec--------------
Confidence 21 1 1356899999999999999999998765 45688888632
Q ss_pred cCCCceEEEccCCcEEEEECCCCEEEEEeCCCCCceEEEEee
Q 001380 891 LSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKEEPELQTLEL 932 (1089)
Q Consensus 891 l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~~~~~~~l~~ 932 (1089)
..-.++++.|+|.=..+-+-++.|..++.+... .+.++++
T Consensus 521 -sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~-q~~~Idg 560 (893)
T KOG0291|consen 521 -SDVLAVSFRPDGKELAVATLDGQITFFDIKEAV-QVGSIDG 560 (893)
T ss_pred -cceeEEEEcCCCCeEEEEEecceEEEEEhhhce-eeccccc
Confidence 346788999999644444567899999988762 4555554
|
|
| >TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.1e-07 Score=108.30 Aligned_cols=117 Identities=15% Similarity=0.191 Sum_probs=89.3
Q ss_pred CCCCCccHHHHHHHHHhCC-CeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCc
Q 001380 163 SGIGFPGALELINQCKSKG-LKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSE 241 (1089)
Q Consensus 163 ~~~~~pG~~~lL~~Lk~~G-i~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~ 241 (1089)
...++||+.++|++|+++| ++++++||.....++.+++++|+. .+|..+. .++++ +++++++..+++
T Consensus 382 ~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~-~~f~~~~-------p~~K~----~~v~~l~~~~~~ 449 (556)
T TIGR01525 382 RDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGID-EVHAELL-------PEDKL----AIVKELQEEGGV 449 (556)
T ss_pred cccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCC-eeeccCC-------HHHHH----HHHHHHHHcCCE
Confidence 4578999999999999999 999999999999999999999996 6665431 11222 455555556789
Q ss_pred EEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecC--cccCCHHHHHhc
Q 001380 242 CIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKE--IGSVSLNDILTG 297 (1089)
Q Consensus 242 ~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~d--l~el~i~~ll~~ 297 (1089)
|+||||+.+|+.++++|| ++|.+|. ..+.....+|+++.+ +..+ .+++..
T Consensus 450 v~~vGDg~nD~~al~~A~---vgia~g~-~~~~~~~~Ad~vi~~~~~~~l--~~~i~~ 501 (556)
T TIGR01525 450 VAMVGDGINDAPALAAAD---VGIAMGA-GSDVAIEAADIVLLNDDLSSL--PTAIDL 501 (556)
T ss_pred EEEEECChhHHHHHhhCC---EeEEeCC-CCHHHHHhCCEEEeCCCHHHH--HHHHHH
Confidence 999999999999999999 6677763 334444579999884 4444 555443
|
This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512. |
| >PRK10976 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.6e-06 Score=94.11 Aligned_cols=73 Identities=14% Similarity=0.128 Sum_probs=56.4
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcC-CcEEecCcccCCHHHHHh
Q 001380 221 LKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEAS-PSLIRKEIGSVSLNDILT 296 (1089)
Q Consensus 221 ~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~-~d~vi~dl~el~i~~ll~ 296 (1089)
+-.|...++.+++++|++++++++|||+.||+.|.+.+|. .|..+...+++++.. +++|+.+-.+=.+...|.
T Consensus 188 gvsKg~al~~l~~~lgi~~~~viafGD~~NDi~Ml~~ag~---~vAm~NA~~~vK~~A~~~~v~~~n~edGVa~~l~ 261 (266)
T PRK10976 188 GVSKGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGK---GCIMGNAHQRLKDLLPELEVIGSNADDAVPHYLR 261 (266)
T ss_pred CCChHHHHHHHHHHcCCCHHHeEEEcCCcccHHHHHHcCC---CeeecCCcHHHHHhCCCCeecccCchHHHHHHHH
Confidence 4557888999999999999999999999999999999995 455555667776632 347777766655555554
|
|
| >cd02958 UAS UAS family; UAS is a domain of unknown function | Back alignment and domain information |
|---|
Probab=98.39 E-value=2e-06 Score=81.51 Aligned_cols=96 Identities=16% Similarity=0.208 Sum_probs=71.5
Q ss_pred cccCCCEEEEEEecCCCcchhhhhhhH---HHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCCh
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVLPDL---EFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDM 525 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~p~l---~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~ 525 (1089)
+.-++|+++|+|+++||++|..+.... .++.+.+.+ .+.++.+... + ....
T Consensus 13 Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~-----~--------------------~e~~ 66 (114)
T cd02958 13 AKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDID-----S--------------------SEGQ 66 (114)
T ss_pred HHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCC-----C--------------------ccHH
Confidence 344689999999999999999875432 123333332 4666666431 0 1133
Q ss_pred hHHHHhCCCceeEEEEECC-CCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 526 NLWRELGVNSWPTFAVVGP-NGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 526 ~l~~~~~v~~~Pt~~lid~-~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
++++.|++.++|++++||+ +|+++.+..|....+++...|+++..
T Consensus 67 ~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 67 RFLQSYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred HHHHHhCccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHHh
Confidence 5788899999999999999 89999999999999988888877654
|
Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP), |
| >TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase | Back alignment and domain information |
|---|
Probab=98.38 E-value=8.6e-07 Score=107.36 Aligned_cols=119 Identities=16% Similarity=0.218 Sum_probs=91.9
Q ss_pred CCCCCccHHHHHHHHHhCCC-eEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCc
Q 001380 163 SGIGFPGALELINQCKSKGL-KVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSE 241 (1089)
Q Consensus 163 ~~~~~pG~~~lL~~Lk~~Gi-~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~ 241 (1089)
...++||+.++|++|+++|+ +++++||.....++.+++++|++ .+|..+. ..++ ..++++++...++
T Consensus 360 ~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~-~~f~~~~-------p~~K----~~~i~~l~~~~~~ 427 (536)
T TIGR01512 360 SDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGID-EVHAELL-------PEDK----LEIVKELREKYGP 427 (536)
T ss_pred eccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCCh-hhhhccC-------cHHH----HHHHHHHHhcCCE
Confidence 34679999999999999999 99999999999999999999996 6664332 1122 3466666666689
Q ss_pred EEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEe--cCcccCCHHHHHhcc
Q 001380 242 CIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIR--KEIGSVSLNDILTGG 298 (1089)
Q Consensus 242 ~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi--~dl~el~i~~ll~~~ 298 (1089)
++||||+.+|+.+++++| +++.+|....+.....+|+++ +++.++ .+++...
T Consensus 428 v~~vGDg~nD~~al~~A~---vgia~g~~~~~~~~~~ad~vl~~~~l~~l--~~~i~~~ 481 (536)
T TIGR01512 428 VAMVGDGINDAPALAAAD---VGIAMGASGSDVAIETADVVLLNDDLSRL--PQAIRLA 481 (536)
T ss_pred EEEEeCCHHHHHHHHhCC---EEEEeCCCccHHHHHhCCEEEECCCHHHH--HHHHHHH
Confidence 999999999999999999 467776422333444789988 788777 5555443
|
. |
| >PHA02125 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.6e-06 Score=75.25 Aligned_cols=61 Identities=31% Similarity=0.466 Sum_probs=48.1
Q ss_pred EEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhCCCce
Q 001380 457 VLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSW 536 (1089)
Q Consensus 457 ll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~ 536 (1089)
++.||++||++|+...|.|.++. +.++-|.. |...+++++|+|.++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-------~~~~~vd~---------------------------~~~~~l~~~~~v~~~ 47 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-------YTYVDVDT---------------------------DEGVELTAKHHIRSL 47 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-------heEEeeeC---------------------------CCCHHHHHHcCCcee
Confidence 68999999999999999987652 33455522 456789999999999
Q ss_pred eEEEEECCCCcEEEEecCC
Q 001380 537 PTFAVVGPNGKLLAQLAGE 555 (1089)
Q Consensus 537 Pt~~lid~~G~i~~~~~G~ 555 (1089)
||++ +|+.+.++.|.
T Consensus 48 PT~~----~g~~~~~~~G~ 62 (75)
T PHA02125 48 PTLV----NTSTLDRFTGV 62 (75)
T ss_pred CeEE----CCEEEEEEeCC
Confidence 9976 67877788775
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.36 E-value=7.2e-05 Score=75.99 Aligned_cols=226 Identities=16% Similarity=0.186 Sum_probs=122.6
Q ss_pred ceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEE--EEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEE
Q 001380 604 GKLAIDILNNRLFISDSNHNRIVVTDLDGNFIV--QIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHAL 681 (1089)
Q Consensus 604 ~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~--~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I 681 (1089)
.|+.++...+.||+.|-..+.|.++|...+.+. .|.++...|+. --....|++.++.- |..+ .|
T Consensus 18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~i-----lpv~~~~q~~~v~~-G~kf--------~i 83 (310)
T KOG4499|consen 18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFI-----LPVEGGPQEFAVGC-GSKF--------VI 83 (310)
T ss_pred CCCceEEecceEEEEEeccCceehhhhhhhheEEEEEecCcceeEE-----EEecCCCceEEEee-cceE--------EE
Confidence 355677778999999999999999887644433 33333121110 00112344444431 2212 22
Q ss_pred EEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEE-ECCCcEEEEEECCCCeEEEEeCCCccc
Q 001380 682 REIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIA-MAGQHQIWEHSTVDGVTRAFSGDGYER 760 (1089)
Q Consensus 682 ~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyva-d~~~~~I~~~~~~~g~~~~~~g~g~~~ 760 (1089)
..+|........+...-.-.. ...=+.-+|--+||+| +.|.. |+...- .+-+.+|.+..+...+...
T Consensus 84 ~nwd~~~~~a~v~~t~~ev~~---------d~kknR~NDgkvdP~G-ryy~GtMad~~~--~le~~~g~Ly~~~~~h~v~ 151 (310)
T KOG4499|consen 84 VNWDGVSESAKVYRTLFEVQP---------DRKKNRLNDGKVDPDG-RYYGGTMADFGD--DLEPIGGELYSWLAGHQVE 151 (310)
T ss_pred EEcccccceeeeeeeccccCc---------hHHhcccccCccCCCC-ceeeeeeccccc--cccccccEEEEeccCCCce
Confidence 233322222222211000000 0011234455678888 44653 333222 2223344444443222111
Q ss_pred cCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEE--cCCCCeEEEecCCCCCCCCccccCCCCCccccccccC
Q 001380 761 NLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALN--LKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQH 838 (1089)
Q Consensus 761 ~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~--~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~ 838 (1089)
. ....+.-|+||++|.+-+.+|+.|+.+..|..++ ..+|.+. +++.+|..-.. ...--+.
T Consensus 152 ~------i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~s--------nr~~i~dlrk~----~~~e~~~ 213 (310)
T KOG4499|consen 152 L------IWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLS--------NRKVIFDLRKS----QPFESLE 213 (310)
T ss_pred e------eehhccCCccccccccCcEEEEEccCceEEeeeecCCCccccc--------CcceeEEeccC----CCcCCCC
Confidence 1 1133456899999999999999999999995555 6655442 22233322111 0001235
Q ss_pred ceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEE
Q 001380 839 PLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTL 873 (1089)
Q Consensus 839 P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~ 873 (1089)
|.|+++|.+|+||||-...++|.++||.+|.+..-
T Consensus 214 PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~e 248 (310)
T KOG4499|consen 214 PDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLE 248 (310)
T ss_pred CCcceEccCCcEEEEEecCcEEEEECCCCCcEEEE
Confidence 89999999999999999999999999988876443
|
|
| >TIGR02251 HIF-SF_euk Dullard-like phosphatase domain | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.6e-07 Score=91.40 Aligned_cols=106 Identities=8% Similarity=0.053 Sum_probs=91.9
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEE
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIV 244 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~ 244 (1089)
...||+.++|++|.+. +.++|.|++.+..++.+++.++....+|+.+++.+.....+++ +.+.++.+|.+++++||
T Consensus 42 ~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ldp~~~~f~~~l~r~~~~~~~~~---~~K~L~~l~~~~~~vIi 117 (162)
T TIGR02251 42 FKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDILDRGGKVISRRLYRESCVFTNGK---YVKDLSLVGKDLSKVII 117 (162)
T ss_pred EECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHHCcCCCEEeEEEEccccEEeCCC---EEeEchhcCCChhhEEE
Confidence 5689999999999998 9999999999999999999999863489999999887766666 77888999999999999
Q ss_pred EcCChhhHHHHHHcCCeEEEEcCCCCHHHH
Q 001380 245 IEDALAGVQAAKAAQMRCIAVTTTLSEERL 274 (1089)
Q Consensus 245 VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l 274 (1089)
|||+..|+.++.++|+.+..+.......++
T Consensus 118 VDD~~~~~~~~~~NgI~i~~f~~~~~D~~L 147 (162)
T TIGR02251 118 IDNSPYSYSLQPDNAIPIKSWFGDPNDTEL 147 (162)
T ss_pred EeCChhhhccCccCEeecCCCCCCCCHHHH
Confidence 999999999999999887777654344444
|
This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031. |
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.7e-06 Score=75.16 Aligned_cols=69 Identities=20% Similarity=0.362 Sum_probs=57.3
Q ss_pred EEEEccC-CcEEEEeCC-----------------CCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccC
Q 001380 841 GVYCAKN-GQIYVADSY-----------------NHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQN 902 (1089)
Q Consensus 841 gva~~~~-G~lyVaD~~-----------------n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~ 902 (1089)
+++++++ |.||++|+. ++|+.++||.+++++.+.. .|..|+||+++++
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~--------------~L~fpNGVals~d 67 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD--------------GLYFPNGVALSPD 67 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEE--------------EESSEEEEEE-TT
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehh--------------CCCccCeEEEcCC
Confidence 6889988 999999974 4799999999999999885 5889999999999
Q ss_pred Cc-EEEEECCCCEEEEEeCCCC
Q 001380 903 GN-LFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 903 G~-lyVad~~n~~I~~~~~~~~ 923 (1089)
+. |+|+++..+||.++-+.|.
T Consensus 68 ~~~vlv~Et~~~Ri~rywl~Gp 89 (89)
T PF03088_consen 68 ESFVLVAETGRYRILRYWLKGP 89 (89)
T ss_dssp SSEEEEEEGGGTEEEEEESSST
T ss_pred CCEEEEEeccCceEEEEEEeCC
Confidence 86 9999999999999998763
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00012 Score=87.06 Aligned_cols=200 Identities=16% Similarity=0.230 Sum_probs=124.3
Q ss_pred EEEeecCCeEEEE-e-CCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC--CCCEE
Q 001380 606 LAIDILNNRLFIS-D-SNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT--ENHAL 681 (1089)
Q Consensus 606 vavd~~~g~L~vs-d-~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~--~n~~I 681 (1089)
.+++|++.+|+++ + .+..+|++++.++.....+... . + .-...+++|+|+.|+++.. ++..|
T Consensus 223 p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~-~-g------------~~~~~~wSPDG~~La~~~~~~g~~~I 288 (448)
T PRK04792 223 PAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF-P-G------------INGAPRFSPDGKKLALVLSKDGQPEI 288 (448)
T ss_pred ceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC-C-C------------CcCCeeECCCCCEEEEEEeCCCCeEE
Confidence 4677756666554 3 2345799998875433333221 1 0 1134688999997776532 34579
Q ss_pred EEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC--CCcEEEEEECCCCeEEEEeCCCcc
Q 001380 682 REIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA--GQHQIWEHSTVDGVTRAFSGDGYE 759 (1089)
Q Consensus 682 ~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~--~~~~I~~~~~~~g~~~~~~g~g~~ 759 (1089)
+.+|++++.++.+.... ......+|+|+|..|+++.. +..+|+.+|..++..+.+.-.+
T Consensus 289 y~~dl~tg~~~~lt~~~-----------------~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g-- 349 (448)
T PRK04792 289 YVVDIATKALTRITRHR-----------------AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEG-- 349 (448)
T ss_pred EEEECCCCCeEECccCC-----------------CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCC--
Confidence 99999988887765321 12345678999988877653 4568999999888776654211
Q ss_pred ccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCC--eEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCcccccccc
Q 001380 760 RNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESS--SIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQ 837 (1089)
Q Consensus 760 ~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~--~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~ 837 (1089)
....+.+++|||+.||++...++ .|..++++++....+..+. .+ .
T Consensus 350 -------------~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~------------~d--------~ 396 (448)
T PRK04792 350 -------------EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTR------------LD--------E 396 (448)
T ss_pred -------------CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCC------------CC--------C
Confidence 01224588999999988765443 6788898877665542210 00 1
Q ss_pred CceEEEEccCCc-EEEEeCC--CCEEEEEeCCCCeEEEEe
Q 001380 838 HPLGVYCAKNGQ-IYVADSY--NHKIKKLDPASNRVSTLA 874 (1089)
Q Consensus 838 ~P~gva~~~~G~-lyVaD~~--n~~I~~~d~~~~~v~t~~ 874 (1089)
.| .+++||+ |+++... ...|..++.+++....+.
T Consensus 397 ~p---s~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~ 433 (448)
T PRK04792 397 SP---SVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLP 433 (448)
T ss_pred Cc---eECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence 23 5788885 4444332 234778888766666654
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00038 Score=81.40 Aligned_cols=254 Identities=19% Similarity=0.212 Sum_probs=171.4
Q ss_pred CCCCCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC
Q 001380 599 PLKFPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE 677 (1089)
Q Consensus 599 ~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~ 677 (1089)
.+..-..++++| +|.+.++....+.|.+||.. |--..++... . +...++.+...|+ ..++-.-
T Consensus 349 H~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteH-t-------------s~Vt~v~f~~~g~-~llssSL 412 (893)
T KOG0291|consen 349 HSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFTEH-T-------------SGVTAVQFTARGN-VLLSSSL 412 (893)
T ss_pred cccceeeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEeccC-C-------------CceEEEEEEecCC-EEEEeec
Confidence 344455788887 89999999999999999976 5555566544 2 2458999999999 6677667
Q ss_pred CCEEEEEECCCC-eEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCC
Q 001380 678 NHALREIDFVND-TVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGD 756 (1089)
Q Consensus 678 n~~I~~~d~~~g-~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~ 756 (1089)
.++||.+|+... ..+|+..... -.-..||+||.|..+.......-.|+.|+.++|++..+. +
T Consensus 413 DGtVRAwDlkRYrNfRTft~P~p----------------~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiL-s 475 (893)
T KOG0291|consen 413 DGTVRAWDLKRYRNFRTFTSPEP----------------IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDIL-S 475 (893)
T ss_pred CCeEEeeeecccceeeeecCCCc----------------eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehh-c
Confidence 899999998763 3555542211 123469999999666555555668999999999876543 1
Q ss_pred CccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCC--CeEEEecCCCCCCCCccccCCCCCccccc
Q 001380 757 GYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTG--GSRLLAGGDPIFPDNLFKFGDRDGMGSEV 834 (1089)
Q Consensus 757 g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~--~~~~~~g~~~~~~~~l~~~g~~dg~~~~~ 834 (1089)
|.|+ --++|+++++| .+.++-+...+||+++.-.. .+.++.-
T Consensus 476 GHEg-------------PVs~l~f~~~~-~~LaS~SWDkTVRiW~if~s~~~vEtl~i---------------------- 519 (893)
T KOG0291|consen 476 GHEG-------------PVSGLSFSPDG-SLLASGSWDKTVRIWDIFSSSGTVETLEI---------------------- 519 (893)
T ss_pred CCCC-------------cceeeEEcccc-CeEEeccccceEEEEEeeccCceeeeEee----------------------
Confidence 2111 13689999999 67788888899998875432 3333321
Q ss_pred cccCceEEEEccCCc-EEEEeCCCCEEEEEeCCCC-eEEEEeccCC--C--CCCCCc-c-cccccCCCceEEEccCCcEE
Q 001380 835 LLQHPLGVYCAKNGQ-IYVADSYNHKIKKLDPASN-RVSTLAGIGK--A--GFKDGA-A-LAAQLSEPAGIIEAQNGNLF 906 (1089)
Q Consensus 835 ~l~~P~gva~~~~G~-lyVaD~~n~~I~~~d~~~~-~v~t~~g~g~--~--g~~~g~-~-~~~~l~~P~gi~vd~~G~ly 906 (1089)
-...+++++.|+|. |.|+- -++.|.-+|...+ ++.++.|.-. . ...+-. + ..++-..=+.||+..||...
T Consensus 520 -~sdvl~vsfrPdG~elaVaT-ldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~I 597 (893)
T KOG0291|consen 520 -RSDVLAVSFRPDGKELAVAT-LDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCI 597 (893)
T ss_pred -ccceeEEEEcCCCCeEEEEE-ecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEE
Confidence 11357899999995 77764 5688999987533 3334433211 0 111111 1 12233445679999999999
Q ss_pred EEECCCCEEEEEeCCCC
Q 001380 907 IADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 907 Vad~~n~~I~~~~~~~~ 923 (1089)
+|...++.|-.++...+
T Consensus 598 lAgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 598 LAGGESNSICIYDVPEG 614 (893)
T ss_pred EecCCcccEEEEECchh
Confidence 99988899999998876
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00018 Score=85.47 Aligned_cols=201 Identities=16% Similarity=0.165 Sum_probs=126.0
Q ss_pred eEEEeecCCeEEEE-eC-CCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC--CCCE
Q 001380 605 KLAIDILNNRLFIS-DS-NHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT--ENHA 680 (1089)
Q Consensus 605 ~vavd~~~g~L~vs-d~-~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~--~n~~ 680 (1089)
.++++|++.+|+.+ +. +...|++++.++.....+... . + .-...+++|+|+.|+++-. ++..
T Consensus 206 ~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~-~-g------------~~~~~~~SPDG~~la~~~~~~g~~~ 271 (435)
T PRK05137 206 TPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNF-P-G------------MTFAPRFSPDGRKVVMSLSQGGNTD 271 (435)
T ss_pred eeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecC-C-C------------cccCcEECCCCCEEEEEEecCCCce
Confidence 35667755555544 32 456899998875444444322 1 0 1245678999987765532 3467
Q ss_pred EEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC--CCcEEEEEECCCCeEEEEeCCCc
Q 001380 681 LREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA--GQHQIWEHSTVDGVTRAFSGDGY 758 (1089)
Q Consensus 681 I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~--~~~~I~~~~~~~g~~~~~~g~g~ 758 (1089)
|+.+|++++.++.+..... .....+++|+|..|+++.. +..+|+.+|..++..+.+...+
T Consensus 272 Iy~~d~~~~~~~~Lt~~~~-----------------~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~- 333 (435)
T PRK05137 272 IYTMDLRSGTTTRLTDSPA-----------------IDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGG- 333 (435)
T ss_pred EEEEECCCCceEEccCCCC-----------------ccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCC-
Confidence 9999999988877753110 1234688999988877653 3458999999888777664211
Q ss_pred cccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCC--CeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccc
Q 001380 759 ERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSES--SSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLL 836 (1089)
Q Consensus 759 ~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~--~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l 836 (1089)
. .-...+++|+|+.|+++.... ..|..++++++..+.+..+ .
T Consensus 334 -----------~---~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~------------~---------- 377 (435)
T PRK05137 334 -----------G---RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSG------------F---------- 377 (435)
T ss_pred -----------C---cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCC------------C----------
Confidence 0 112457899998888776433 4788888876655444211 0
Q ss_pred cCceEEEEccCCc-EEE-EeCCC----CEEEEEeCCCCeEEEEe
Q 001380 837 QHPLGVYCAKNGQ-IYV-ADSYN----HKIKKLDPASNRVSTLA 874 (1089)
Q Consensus 837 ~~P~gva~~~~G~-lyV-aD~~n----~~I~~~d~~~~~v~t~~ 874 (1089)
......+++||+ ||+ ++... .+|.++|.+++....+.
T Consensus 378 -~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 378 -LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred -CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 123357889985 444 43332 47999999888777664
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00022 Score=75.92 Aligned_cols=208 Identities=16% Similarity=0.141 Sum_probs=128.1
Q ss_pred CcceeEEeeCCCEEEEEECCC--CEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC
Q 001380 658 RPQGLAYNAKKNLLYVADTEN--HALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA 735 (1089)
Q Consensus 658 ~P~gla~d~~g~~lyVaD~~n--~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~ 735 (1089)
.-||+.+..+|. ||.+.... ..|+++|+++|++......... ..--||++. ++.||.-.+
T Consensus 46 FTQGL~~~~~g~-LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~---------------~FgEGit~~--~d~l~qLTW 107 (264)
T PF05096_consen 46 FTQGLEFLDDGT-LYESTGLYGQSSLRKVDLETGKVLQSVPLPPR---------------YFGEGITIL--GDKLYQLTW 107 (264)
T ss_dssp EEEEEEEEETTE-EEEEECSTTEEEEEEEETTTSSEEEEEE-TTT-----------------EEEEEEE--TTEEEEEES
T ss_pred cCccEEecCCCE-EEEeCCCCCcEEEEEEECCCCcEEEEEECCcc---------------ccceeEEEE--CCEEEEEEe
Confidence 349999976665 99997754 4999999999877654322211 134678887 579999999
Q ss_pred CCcEEEEEECCCCe-EEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeE-EEecC
Q 001380 736 GQHQIWEHSTVDGV-TRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR-LLAGG 813 (1089)
Q Consensus 736 ~~~~I~~~~~~~g~-~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~-~~~g~ 813 (1089)
.++..++||..+-+ +..|.-. ....||+-+ |+.||++| ++++|+.+++.+-... .+.-.
T Consensus 108 k~~~~f~yd~~tl~~~~~~~y~----------------~EGWGLt~d--g~~Li~SD-GS~~L~~~dP~~f~~~~~i~V~ 168 (264)
T PF05096_consen 108 KEGTGFVYDPNTLKKIGTFPYP----------------GEGWGLTSD--GKRLIMSD-GSSRLYFLDPETFKEVRTIQVT 168 (264)
T ss_dssp SSSEEEEEETTTTEEEEEEE-S----------------SS--EEEEC--SSCEEEE--SSSEEEEE-TTT-SEEEEEE-E
T ss_pred cCCeEEEEccccceEEEEEecC----------------CcceEEEcC--CCEEEEEC-CccceEEECCcccceEEEEEEE
Confidence 99999999998653 3344311 145799955 55899999 5899999999854332 11100
Q ss_pred CCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCC-C--CCCCcccccc
Q 001380 814 DPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKA-G--FKDGAALAAQ 890 (1089)
Q Consensus 814 ~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~-g--~~~g~~~~~~ 890 (1089)
+ +|. . +..-.-+-+- +|.||..-+...+|.+|||.+|.|..+.....- . ..+. .....
T Consensus 169 ~-------------~g~-p---v~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~-~~~~~ 229 (264)
T PF05096_consen 169 D-------------NGR-P---VSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDK-SRQPD 229 (264)
T ss_dssp E-------------TTE-E------EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTT-ST--T
T ss_pred E-------------CCE-E---CCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccc-ccccc
Confidence 0 010 0 1112223332 799999999999999999999999887632110 0 0000 00112
Q ss_pred cCCCceEEEccC-CcEEEEECCCCEEEEEeCC
Q 001380 891 LSEPAGIIEAQN-GNLFIADTNNNIIRYLDLN 921 (1089)
Q Consensus 891 l~~P~gi~vd~~-G~lyVad~~n~~I~~~~~~ 921 (1089)
-+--+|||.|++ +++||+.-.=..+..+.+.
T Consensus 230 ~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l~ 261 (264)
T PF05096_consen 230 DDVLNGIAYDPETDRLFVTGKLWPKLYEVKLV 261 (264)
T ss_dssp TS-EEEEEEETTTTEEEEEETT-SEEEEEEEE
T ss_pred CCeeEeEeEeCCCCEEEEEeCCCCceEEEEEE
Confidence 345789999975 4799998766667666553
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00021 Score=84.40 Aligned_cols=280 Identities=11% Similarity=0.067 Sum_probs=151.8
Q ss_pred EEEEeCCCCEEEEEe-CCCCEEEEEecCC---CCCCC----------C----CCCCccccCCcceeEEe--eCCCEEEEE
Q 001380 615 LFISDSNHNRIVVTD-LDGNFIVQIGSSG---EEGLR----------D----GSFDDATFNRPQGLAYN--AKKNLLYVA 674 (1089)
Q Consensus 615 L~vsd~~~~~I~~~~-~~g~~~~~i~~~g---~~g~~----------d----G~~~~~~f~~P~gla~d--~~g~~lyVa 674 (1089)
.|+|...++.+.++- ++++.+.+|+-.. ..|+. . |.+..+-..+|+-=--+ .+|++||+-
T Consensus 68 ~f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~fin 147 (635)
T PRK02888 68 GFWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIN 147 (635)
T ss_pred EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEe
Confidence 445555567777774 4677666655431 11220 0 11222233344321111 268999999
Q ss_pred ECCCCEEEEEECCCCeEEEEecC----CCCCCCCCCCCcccccc-cCCceeEEEecCCCEEEEEECCCcEEEEEECCCCe
Q 001380 675 DTENHALREIDFVNDTVRTLAGN----GTKGSDYQGGEKGTSQL-LNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGV 749 (1089)
Q Consensus 675 D~~n~~I~~~d~~~g~v~~~ag~----g~~~~~~~~~~~~~~~~-l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~ 749 (1089)
|..|.||-+|+++.-+...+... +..|..+.- .+-++.- .+.=..+=++++|..++.+....+.+..+|.++..
T Consensus 148 dk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~-~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etme 226 (635)
T PRK02888 148 DKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQK-IPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETME 226 (635)
T ss_pred cCCCcceEEEECccEeeceeEeCCCccCccccCccc-cCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccce
Confidence 99999999999976443333321 111111000 0001000 01112233566777787777777788888887654
Q ss_pred EEE-EeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeC---CCCeEEEEEcCCCCeEEEecC---CCCCCCCcc
Q 001380 750 TRA-FSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADS---ESSSIRALNLKTGGSRLLAGG---DPIFPDNLF 822 (1089)
Q Consensus 750 ~~~-~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~---~~~~I~~~~~~~~~~~~~~g~---~~~~~~~l~ 822 (1089)
+.. +.-. .+|.+++++++|+++|++.. ....+..++...........- .....++-+
T Consensus 227 V~~qV~Vd----------------gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~ 290 (635)
T PRK02888 227 VAWQVMVD----------------GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKF 290 (635)
T ss_pred EEEEEEeC----------------CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCE
Confidence 422 2111 16889999999999999962 223343433222111110000 000000000
Q ss_pred cc-CC-----CCCcc-------c---cccccCceEEEEccCC-cEEEEeCCCCEEEEEeCCCCeE---------EEEecc
Q 001380 823 KF-GD-----RDGMG-------S---EVLLQHPLGVYCAKNG-QIYVADSYNHKIKKLDPASNRV---------STLAGI 876 (1089)
Q Consensus 823 ~~-g~-----~dg~~-------~---~~~l~~P~gva~~~~G-~lyVaD~~n~~I~~~d~~~~~v---------~t~~g~ 876 (1089)
.+ ++ .|+.. . -.-=..|+||+++||| .+||+.-..+.|.+||.+.... .++.+.
T Consensus 291 ~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvae 370 (635)
T PRK02888 291 KTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAE 370 (635)
T ss_pred EEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEe
Confidence 00 00 01110 0 0111479999999999 5999999899999999865331 122221
Q ss_pred CCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCC
Q 001380 877 GKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNK 922 (1089)
Q Consensus 877 g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~ 922 (1089)
-.- =..|...++|++|+.|++=.-.+.|.++++..
T Consensus 371 vev-----------GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 371 PEL-----------GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ecc-----------CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 110 13499999999999999988889999999876
|
|
| >cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.3e-06 Score=75.65 Aligned_cols=71 Identities=21% Similarity=0.321 Sum_probs=56.7
Q ss_pred cccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHH
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLW 528 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~ 528 (1089)
.++++.+.+..|+++||++|....+.++++.+++.+ +.+.-+.. |...+++
T Consensus 8 ~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~--i~~~~vd~---------------------------~~~~e~a 58 (89)
T cd03026 8 RRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPN--IEHEMIDG---------------------------ALFQDEV 58 (89)
T ss_pred HhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCC--ceEEEEEh---------------------------HhCHHHH
Confidence 467888889999999999999999999999988764 44444422 4556899
Q ss_pred HHhCCCceeEEEEECCCCcEEEE
Q 001380 529 RELGVNSWPTFAVVGPNGKLLAQ 551 (1089)
Q Consensus 529 ~~~~v~~~Pt~~lid~~G~i~~~ 551 (1089)
+.|+|.++|++++ +|+++..
T Consensus 59 ~~~~V~~vPt~vi---dG~~~~~ 78 (89)
T cd03026 59 EERGIMSVPAIFL---NGELFGF 78 (89)
T ss_pred HHcCCccCCEEEE---CCEEEEe
Confidence 9999999999974 6877664
|
AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0025 Score=75.24 Aligned_cols=220 Identities=15% Similarity=0.146 Sum_probs=124.9
Q ss_pred CEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCC---EEEEEECC-CCEEEEEECCCCeEEEEecCC
Q 001380 623 NRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKN---LLYVADTE-NHALREIDFVNDTVRTLAGNG 698 (1089)
Q Consensus 623 ~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~---~lyVaD~~-n~~I~~~d~~~g~v~~~ag~g 698 (1089)
.+|.+.|.+|...+.+-..... -..| +++|+|+ ++|++... ...|+..++++|..+.+....
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~-----------~~sP---~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~ 230 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSL-----------SITP---TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQ 230 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCC-----------cccc---eEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCC
Confidence 4677777777655544332110 1133 7888886 35677654 458999999988877775311
Q ss_pred CCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC--CCcEEEE--EECCC---CeEEEEeCCCccccCCCCCCCCcc
Q 001380 699 TKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA--GQHQIWE--HSTVD---GVTRAFSGDGYERNLNGSSSLNTS 771 (1089)
Q Consensus 699 ~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~--~~~~I~~--~~~~~---g~~~~~~g~g~~~~~~g~~~~~~~ 771 (1089)
+ .....+|+|+|+.|.++.. ++..++. ++..+ +..+.+... .
T Consensus 231 --g---------------~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~--------------~ 279 (428)
T PRK01029 231 --G---------------NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNE--------------A 279 (428)
T ss_pred --C---------------CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecC--------------C
Confidence 1 1234689999988887763 3445554 34433 222222210 0
Q ss_pred ccCCceEEEcCCCCEEEEEeC--CCCeEEEEEcCC--CCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccC
Q 001380 772 FAQPSGISLSPDFMEIYVADS--ESSSIRALNLKT--GGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKN 847 (1089)
Q Consensus 772 ~~~P~glav~~~g~~lyvad~--~~~~I~~~~~~~--~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~ 847 (1089)
.......+++|||+.|+++.. +...|+.++.++ +..+.+.... ......+++||
T Consensus 280 ~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~----------------------~~~~~p~wSPD 337 (428)
T PRK01029 280 FGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKY----------------------RNSSCPAWSPD 337 (428)
T ss_pred CCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCC----------------------CCccceeECCC
Confidence 112235689999986665542 234677776642 2222221110 01234578899
Q ss_pred Cc-EEEE-eC-CCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEEEEC--CCCEEEEEeCC
Q 001380 848 GQ-IYVA-DS-YNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADT--NNNIIRYLDLN 921 (1089)
Q Consensus 848 G~-lyVa-D~-~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~--~n~~I~~~~~~ 921 (1089)
|+ |+++ +. +...|.++|.+++....+.... .........++|+ |+++.. +...|..++++
T Consensus 338 G~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~--------------~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 338 GKKIAFCSVIKGVRQICVYDLATGRDYQLTTSP--------------ENKESPSWAIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCeEEccCCC--------------CCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 95 4443 32 3468999999999888775320 1123456677775 544432 34678888888
Q ss_pred CC
Q 001380 922 KE 923 (1089)
Q Consensus 922 ~~ 923 (1089)
++
T Consensus 404 ~g 405 (428)
T PRK01029 404 TK 405 (428)
T ss_pred CC
Confidence 76
|
|
| >KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.7e-06 Score=99.25 Aligned_cols=87 Identities=18% Similarity=0.411 Sum_probs=74.1
Q ss_pred CCEEEEEEecCCCcchhhhhhhHHHHHHHcCCC--CEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHH
Q 001380 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDM--PFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRE 530 (1089)
Q Consensus 453 gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~--~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~ 530 (1089)
...+||.|||+||++|+...|++.+.+..++.. .+.+.-|.. ..+..++.+
T Consensus 42 ~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDa---------------------------t~~~~~~~~ 94 (493)
T KOG0190|consen 42 HEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDA---------------------------TEESDLASK 94 (493)
T ss_pred CceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeec---------------------------chhhhhHhh
Confidence 468899999999999999999999999998865 566666632 345789999
Q ss_pred hCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHH
Q 001380 531 LGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEA 567 (1089)
Q Consensus 531 ~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~ 567 (1089)
|+|+++||+-++ ++|+....|.|....+.+..+++.
T Consensus 95 y~v~gyPTlkiF-rnG~~~~~Y~G~r~adgIv~wl~k 130 (493)
T KOG0190|consen 95 YEVRGYPTLKIF-RNGRSAQDYNGPREADGIVKWLKK 130 (493)
T ss_pred hcCCCCCeEEEE-ecCCcceeccCcccHHHHHHHHHh
Confidence 999999999999 999987779999888888888754
|
|
| >PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1 | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.1e-06 Score=77.91 Aligned_cols=82 Identities=23% Similarity=0.369 Sum_probs=72.1
Q ss_pred cCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCC--hhcHHHHHHHHHH-c
Q 001380 437 LDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDN--EKDLEAIRNAVLR-Y 513 (1089)
Q Consensus 437 ~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~--~~~~~~~~~~~~~-~ 513 (1089)
..+++|+.++| +.++||++||.--|+-|+.-. ....|++|+++|+++|+.|+++-+..|.. ..+.++++.++.. +
T Consensus 6 ~~~~~G~~v~l-~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~~~~~ 83 (108)
T PF00255_consen 6 AKDIDGKPVSL-SKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFCKEKF 83 (108)
T ss_dssp EEBTTSSEEEG-GGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHHCHCH
T ss_pred eeCCCCCEECH-HHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHHHhcc
Confidence 34679999999 999999999999999999988 88999999999999999999999998854 3577889998888 7
Q ss_pred CCcccee
Q 001380 514 GISHPVV 520 (1089)
Q Consensus 514 ~~~~~v~ 520 (1089)
+.+||+.
T Consensus 84 ~~~F~vf 90 (108)
T PF00255_consen 84 GVTFPVF 90 (108)
T ss_dssp T-SSEEB
T ss_pred CCcccce
Confidence 8888875
|
11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C .... |
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00021 Score=84.83 Aligned_cols=200 Identities=18% Similarity=0.195 Sum_probs=125.8
Q ss_pred EEEeecCCeEEEEeC--CCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEE-EC-CCCEE
Q 001380 606 LAIDILNNRLFISDS--NHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVA-DT-ENHAL 681 (1089)
Q Consensus 606 vavd~~~g~L~vsd~--~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVa-D~-~n~~I 681 (1089)
++++|++..|+++.. +++.|++++.++.....+... .+ ....++++|+|+.|+++ +. ++..|
T Consensus 209 p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~--~g------------~~~~~~~SpDG~~l~~~~s~~g~~~I 274 (433)
T PRK04922 209 PAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASF--RG------------INGAPSFSPDGRRLALTLSRDGNPEI 274 (433)
T ss_pred ccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccC--CC------------CccCceECCCCCEEEEEEeCCCCceE
Confidence 466665556665542 345799998875444443321 11 11356899999877654 32 45689
Q ss_pred EEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC--CCcEEEEEECCCCeEEEEeCCCcc
Q 001380 682 REIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA--GQHQIWEHSTVDGVTRAFSGDGYE 759 (1089)
Q Consensus 682 ~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~--~~~~I~~~~~~~g~~~~~~g~g~~ 759 (1089)
+.+|+.++.++.+..... .....+|+|+|..|+++.. +..+|+.++..++..+.+...+
T Consensus 275 y~~d~~~g~~~~lt~~~~-----------------~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g-- 335 (433)
T PRK04922 275 YVMDLGSRQLTRLTNHFG-----------------IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQG-- 335 (433)
T ss_pred EEEECCCCCeEECccCCC-----------------CccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCC--
Confidence 999999988777653210 1234689999987877643 3457999998887766654211
Q ss_pred ccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCC--CeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCcccccccc
Q 001380 760 RNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSES--SSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQ 837 (1089)
Q Consensus 760 ~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~--~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~ 837 (1089)
.....++++|+|+.|+++...+ ..|+.+++.++..+.+..+. .
T Consensus 336 -------------~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~------------~---------- 380 (433)
T PRK04922 336 -------------NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGS------------L---------- 380 (433)
T ss_pred -------------CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCC------------C----------
Confidence 1123578999999998876543 36889998877665442210 0
Q ss_pred CceEEEEccCCc-EEE-EeC-CCCEEEEEeCCCCeEEEEe
Q 001380 838 HPLGVYCAKNGQ-IYV-ADS-YNHKIKKLDPASNRVSTLA 874 (1089)
Q Consensus 838 ~P~gva~~~~G~-lyV-aD~-~n~~I~~~d~~~~~v~t~~ 874 (1089)
-....+++||+ +++ ++. +..+|..++.+++....+.
T Consensus 381 -~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~ 419 (433)
T PRK04922 381 -DESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLV 419 (433)
T ss_pred -CCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEcc
Confidence 11246888986 444 433 3457889998877666654
|
|
| >cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO) | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.4e-06 Score=71.42 Aligned_cols=63 Identities=19% Similarity=0.211 Sum_probs=47.8
Q ss_pred EEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhCCCc
Q 001380 456 VVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNS 535 (1089)
Q Consensus 456 vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~ 535 (1089)
-+..|+++||++|....+.|+++.+++. ++.+.-+.. |.+.++++.||+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~--~i~~~~id~---------------------------~~~~~l~~~~~i~~ 52 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP--NISAEMIDA---------------------------AEFPDLADEYGVMS 52 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC--ceEEEEEEc---------------------------ccCHhHHHHcCCcc
Confidence 3678999999999999999999987654 366665532 34456889999999
Q ss_pred eeEEEEECCCCcEEE
Q 001380 536 WPTFAVVGPNGKLLA 550 (1089)
Q Consensus 536 ~Pt~~lid~~G~i~~ 550 (1089)
+|++++ +|++++
T Consensus 53 vPti~i---~~~~~~ 64 (67)
T cd02973 53 VPAIVI---NGKVEF 64 (67)
T ss_pred cCEEEE---CCEEEE
Confidence 999765 455554
|
All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri |
| >COG4359 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.4e-05 Score=78.01 Aligned_cols=88 Identities=20% Similarity=0.137 Sum_probs=66.7
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCcc--E---------------EEEcC--CccCCCCCH
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFD--A---------------IVSAD--AFENLKPAP 225 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd--~---------------i~~~~--~~~~~KP~~ 225 (1089)
.+-||.++++++++++++++.|+|++-...++.+++.++-. +-++ . ++..+ ..++.||
T Consensus 73 ~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgk-e~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~dK~-- 149 (220)
T COG4359 73 KIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGK-ERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGHDKS-- 149 (220)
T ss_pred ccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccc-cceeeeEEeecCceEcCCCceeeecCCccccCCCcc--
Confidence 68899999999999999999999999999999999988632 2111 1 11111 1233444
Q ss_pred HHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcC
Q 001380 226 DIFLSASKILNVPTSECIVIEDALAGVQAAKAAQ 259 (1089)
Q Consensus 226 ~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG 259 (1089)
..++.+.-+++.++|+||+.+|+.+|+...
T Consensus 150 ----~vI~~l~e~~e~~fy~GDsvsDlsaaklsD 179 (220)
T COG4359 150 ----SVIHELSEPNESIFYCGDSVSDLSAAKLSD 179 (220)
T ss_pred ----hhHHHhhcCCceEEEecCCcccccHhhhhh
Confidence 245566667788999999999999999876
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=98.21 E-value=9.5e-06 Score=71.69 Aligned_cols=71 Identities=21% Similarity=0.215 Sum_probs=57.6
Q ss_pred eeEEEecCCCEEEEEECC-----------------CcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEc
Q 001380 719 WDVCYKPINEKVYIAMAG-----------------QHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLS 781 (1089)
Q Consensus 719 ~~la~~~~g~~lyvad~~-----------------~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~ 781 (1089)
.||+++++++.||++|+. ++++++||+.+++++.+. .++..|+||+++
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~---------------~~L~fpNGVals 65 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLL---------------DGLYFPNGVALS 65 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEE---------------EEESSEEEEEE-
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEeh---------------hCCCccCeEEEc
Confidence 378999986799999964 368999999999998887 457789999999
Q ss_pred CCCCEEEEEeCCCCeEEEEEcCC
Q 001380 782 PDFMEIYVADSESSSIRALNLKT 804 (1089)
Q Consensus 782 ~~g~~lyvad~~~~~I~~~~~~~ 804 (1089)
+|+..|+|++....+|.++-++|
T Consensus 66 ~d~~~vlv~Et~~~Ri~rywl~G 88 (89)
T PF03088_consen 66 PDESFVLVAETGRYRILRYWLKG 88 (89)
T ss_dssp TTSSEEEEEEGGGTEEEEEESSS
T ss_pred CCCCEEEEEeccCceEEEEEEeC
Confidence 99999999999999999998763
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >TIGR02187 GlrX_arch Glutaredoxin-like domain protein | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.4e-06 Score=88.81 Aligned_cols=85 Identities=14% Similarity=0.127 Sum_probs=63.8
Q ss_pred ccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 450 ~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
.+++.++++.||++||++|+...+.++++..++. .+.+.-|.. |...++++
T Consensus 130 ~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~--~i~~~~vD~---------------------------~~~~~~~~ 180 (215)
T TIGR02187 130 SLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAND--KILGEMIEA---------------------------NENPDLAE 180 (215)
T ss_pred hcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC--ceEEEEEeC---------------------------CCCHHHHH
Confidence 3455566777999999999999999999888753 355555522 45678999
Q ss_pred HhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHH
Q 001380 530 ELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEA 567 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~ 567 (1089)
.|+|.++|++++. .+|+. +.|....+++.++|..
T Consensus 181 ~~~V~~vPtl~i~-~~~~~---~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 181 KYGVMSVPKIVIN-KGVEE---FVGAYPEEQFLEYILS 214 (215)
T ss_pred HhCCccCCEEEEe-cCCEE---EECCCCHHHHHHHHHh
Confidence 9999999998876 56653 7787777777776653
|
This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. |
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.001 Score=74.91 Aligned_cols=258 Identities=17% Similarity=0.249 Sum_probs=160.7
Q ss_pred CCCCCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC
Q 001380 599 PLKFPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE 677 (1089)
Q Consensus 599 ~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~ 677 (1089)
.-+|...+-++| +|.+|++-...++|+.+|-. |+.+..++.. ++.--.-.+|+++||+..+ ++-..
T Consensus 189 HskFV~~VRysP-DG~~Fat~gsDgki~iyDGktge~vg~l~~~-----------~aHkGsIfalsWsPDs~~~-~T~Sa 255 (603)
T KOG0318|consen 189 HSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKTGEKVGELEDS-----------DAHKGSIFALSWSPDSTQF-LTVSA 255 (603)
T ss_pred cccceeeEEECC-CCCeEEEecCCccEEEEcCCCccEEEEecCC-----------CCccccEEEEEECCCCceE-EEecC
Confidence 345788888998 79999999999999999864 8888777642 1112245788999998854 44344
Q ss_pred CCEEEEEECCCCe-EEEEecCCCCCCCC-----------------------CCCCc----ccccccCCceeEEEecCCCE
Q 001380 678 NHALREIDFVNDT-VRTLAGNGTKGSDY-----------------------QGGEK----GTSQLLNSPWDVCYKPINEK 729 (1089)
Q Consensus 678 n~~I~~~d~~~g~-v~~~ag~g~~~~~~-----------------------~~~~~----~~~~~l~~P~~la~~~~g~~ 729 (1089)
...++.+|..+.. ++++. .|.+-.+. +.+.+ ....+..+-..+++++++.+
T Consensus 256 Dkt~KIWdVs~~slv~t~~-~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~ 334 (603)
T KOG0318|consen 256 DKTIKIWDVSTNSLVSTWP-MGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKT 334 (603)
T ss_pred CceEEEEEeeccceEEEee-cCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCE
Confidence 5566666655443 33332 22210000 00000 00112234567888888866
Q ss_pred EEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEE
Q 001380 730 VYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRL 809 (1089)
Q Consensus 730 lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~ 809 (1089)
||-++ ..+.|-.|+...|..-.+.|.+ .-.+-.+++.+..+ .+|.+. ..+++++++..++...-
T Consensus 335 i~Sgs-yDG~I~~W~~~~g~~~~~~g~~-------------h~nqI~~~~~~~~~-~~~t~g-~Dd~l~~~~~~~~~~t~ 398 (603)
T KOG0318|consen 335 IYSGS-YDGHINSWDSGSGTSDRLAGKG-------------HTNQIKGMAASESG-ELFTIG-WDDTLRVISLKDNGYTK 398 (603)
T ss_pred EEeec-cCceEEEEecCCcccccccccc-------------ccceEEEEeecCCC-cEEEEe-cCCeEEEEecccCcccc
Confidence 66555 4577778887766666665543 23467788888755 666554 45788888876443210
Q ss_pred EecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCccccc
Q 001380 810 LAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAA 889 (1089)
Q Consensus 810 ~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~ 889 (1089)
.+.+.+| ..|.|+++.++|.+.|.-.+.+ |..+.- .+.++++.
T Consensus 399 ---------~~~~~lg-----------~QP~~lav~~d~~~avv~~~~~-iv~l~~-~~~~~~~~--------------- 441 (603)
T KOG0318|consen 399 ---------SEVVKLG-----------SQPKGLAVLSDGGTAVVACISD-IVLLQD-QTKVSSIP--------------- 441 (603)
T ss_pred ---------cceeecC-----------CCceeEEEcCCCCEEEEEecCc-EEEEec-CCcceeec---------------
Confidence 0111222 3599999999986665555544 444432 23444443
Q ss_pred ccCCCceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 890 QLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 890 ~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
.-.+|.++|+.++++........+.|+++.+++.
T Consensus 442 ~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~ 475 (603)
T KOG0318|consen 442 IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGD 475 (603)
T ss_pred cccccceEEEcCCCCEEEEecccceEEEEEecCC
Confidence 1245889999999988888888888999999986
|
|
| >PLN02887 hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.6e-05 Score=95.52 Aligned_cols=72 Identities=15% Similarity=0.124 Sum_probs=59.1
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHh
Q 001380 221 LKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILT 296 (1089)
Q Consensus 221 ~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~ 296 (1089)
+-.|...++.+++++|++++++++|||+.||++|.+.+| ++|..++..+++++ .+++|..+-.+=.+...|.
T Consensus 505 gvSKG~ALk~L~e~lGI~~eeviAFGDs~NDIeMLe~AG---~gVAMgNA~eeVK~-~Ad~VT~sNdEDGVA~aLe 576 (580)
T PLN02887 505 GTSKGNGVKMLLNHLGVSPDEIMAIGDGENDIEMLQLAS---LGVALSNGAEKTKA-VADVIGVSNDEDGVADAIY 576 (580)
T ss_pred CCCHHHHHHHHHHHcCCCHHHEEEEecchhhHHHHHHCC---CEEEeCCCCHHHHH-hCCEEeCCCCcCHHHHHHH
Confidence 456778899999999999999999999999999999999 45666666677766 5899988877766666654
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.002 Score=67.79 Aligned_cols=259 Identities=17% Similarity=0.198 Sum_probs=161.7
Q ss_pred CCCCCCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEE
Q 001380 594 RLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLY 672 (1089)
Q Consensus 594 ~~~~~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~ly 672 (1089)
+...+.+..-..+-+.+ +.+..|+-+..+++.++|.- ++.+..|..+ . .+..-.|+.|.|+ |
T Consensus 49 r~LkGH~~Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~TtnK~haipl~-s-------------~WVMtCA~sPSg~--~ 111 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWST-DSRRIVSASQDGKLIVWDSFTTNKVHAIPLP-S-------------SWVMTCAYSPSGN--F 111 (343)
T ss_pred EEecccccceeeeEecC-CcCeEEeeccCCeEEEEEcccccceeEEecC-c-------------eeEEEEEECCCCC--e
Confidence 44556666666677776 77888999999999999875 5555555443 1 2445667777776 3
Q ss_pred EEECC-CCEEEEEECCCC-------eEEEEecCCCCCC-----CC------CC-----------CCc--ccccccCCcee
Q 001380 673 VADTE-NHALREIDFVND-------TVRTLAGNGTKGS-----DY------QG-----------GEK--GTSQLLNSPWD 720 (1089)
Q Consensus 673 VaD~~-n~~I~~~d~~~g-------~v~~~ag~g~~~~-----~~------~~-----------~~~--~~~~~l~~P~~ 720 (1089)
||-.+ ++.-.++++.+. ..+.+.|....-+ +. .| +.. ....+...-..
T Consensus 112 VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~s 191 (343)
T KOG0286|consen 112 VACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMS 191 (343)
T ss_pred EEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEE
Confidence 44332 333333433321 1112222111000 00 00 000 00011123456
Q ss_pred EEEecCCCEEEEEECCCcEEEEEECCCCe-EEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEE
Q 001380 721 VCYKPINEKVYIAMAGQHQIWEHSTVDGV-TRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRA 799 (1089)
Q Consensus 721 la~~~~g~~lyvad~~~~~I~~~~~~~g~-~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~ 799 (1089)
|.+.|...+.||+......-..||...+. ++.|.|... .-+.+.+.|+| .-|++-+...+.|.
T Consensus 192 lsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes---------------DINsv~ffP~G-~afatGSDD~tcRl 255 (343)
T KOG0286|consen 192 LSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES---------------DINSVRFFPSG-DAFATGSDDATCRL 255 (343)
T ss_pred EecCCCCCCeEEecccccceeeeeccCcceeEeeccccc---------------ccceEEEccCC-CeeeecCCCceeEE
Confidence 77888556899998877777777776664 456765432 34578999998 89999999999999
Q ss_pred EEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeC-CCCeEEEEeccCC
Q 001380 800 LNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDP-ASNRVSTLAGIGK 878 (1089)
Q Consensus 800 ~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~-~~~~v~t~~g~g~ 878 (1089)
|++..+....+-... .....-.+|+++..|++..+-..+..+.+.|. .+..+..+.|.
T Consensus 256 yDlRaD~~~a~ys~~-------------------~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GH-- 314 (343)
T KOG0286|consen 256 YDLRADQELAVYSHD-------------------SIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGH-- 314 (343)
T ss_pred EeecCCcEEeeeccC-------------------cccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeecc--
Confidence 998865443221110 11334578999999999999888888999986 45566667653
Q ss_pred CCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEE
Q 001380 879 AGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYL 918 (1089)
Q Consensus 879 ~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~ 918 (1089)
=++-++|.+.+||..+-+.++...|++.
T Consensus 315 ------------eNRvScl~~s~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 315 ------------ENRVSCLGVSPDGMAVATGSWDSTLRIW 342 (343)
T ss_pred ------------CCeeEEEEECCCCcEEEecchhHheeec
Confidence 3567888888888877777777777654
|
|
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.3e-06 Score=58.23 Aligned_cols=28 Identities=25% Similarity=0.650 Sum_probs=26.1
Q ss_pred cCCCceEEEccCCcEEEEECCCCEEEEE
Q 001380 891 LSEPAGIIEAQNGNLFIADTNNNIIRYL 918 (1089)
Q Consensus 891 l~~P~gi~vd~~G~lyVad~~n~~I~~~ 918 (1089)
|+.|.||+++++|+|||+|++||+|++|
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 5679999999999999999999999986
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.9e-06 Score=79.79 Aligned_cols=79 Identities=15% Similarity=0.196 Sum_probs=51.2
Q ss_pred cccCCCEEEEEEecCCCcchhhhhhhHH---HHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCCh
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVLPDLE---FLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDM 525 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~p~l~---~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~ 525 (1089)
..-++|+|+|+|++.||++|+.+....- ++.+.. ++++.+|-+.. +.+ |.+.
T Consensus 19 Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l-~~~Fv~V~l~~-----d~t-------------------d~~~ 73 (130)
T cd02960 19 AKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLA-QEDFIMLNLVH-----ETT-------------------DKNL 73 (130)
T ss_pred HHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHH-HhCeEEEEEEe-----ccC-------------------CCCc
Confidence 3447899999999999999998866542 122222 23466666632 111 0000
Q ss_pred hHHHHhCCCceeEEEEECCCCcEEEEecCCC
Q 001380 526 NLWRELGVNSWPTFAVVGPNGKLLAQLAGEG 556 (1089)
Q Consensus 526 ~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~ 556 (1089)
. ..+ .++|+++++|++|+++.+..|..
T Consensus 74 ~---~~g-~~vPtivFld~~g~vi~~i~Gy~ 100 (130)
T cd02960 74 S---PDG-QYVPRIMFVDPSLTVRADITGRY 100 (130)
T ss_pred C---ccC-cccCeEEEECCCCCCcccccccc
Confidence 0 022 47899999999999999887754
|
They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19. |
| >TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.3e-05 Score=86.05 Aligned_cols=68 Identities=13% Similarity=0.163 Sum_probs=53.5
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCH
Q 001380 220 NLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSL 291 (1089)
Q Consensus 220 ~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i 291 (1089)
.+-.|...++.+++++|++++++++|||+.||+.|.+.+|+..+. +...+++++ .+++++.+-.+-.+
T Consensus 185 ~~~~K~~~i~~~~~~~~~~~~~~~~~GD~~nD~~m~~~~~~~~a~---~na~~~~k~-~a~~~~~~n~~dGV 252 (256)
T TIGR00099 185 KGVSKGSALQSLAEALGISLEDVIAFGDGMNDIEMLEAAGYGVAM---GNADEELKA-LADYVTDSNNEDGV 252 (256)
T ss_pred CCCChHHHHHHHHHHcCCCHHHEEEeCCcHHhHHHHHhCCceeEe---cCchHHHHH-hCCEEecCCCCcch
Confidence 356688899999999999999999999999999999999975333 334555554 58888887655433
|
The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences. |
| >COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=5e-06 Score=91.72 Aligned_cols=75 Identities=16% Similarity=0.193 Sum_probs=59.1
Q ss_pred cCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhc
Q 001380 219 ENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTG 297 (1089)
Q Consensus 219 ~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~ 297 (1089)
..+.-|...++.+++++|++++++++|||+.||+.|-+.+| .+|..+...+++++ .++++..+-.+-.+...|+.
T Consensus 185 ~~g~~K~~al~~l~~~lgi~~~~v~afGD~~ND~~Ml~~ag---~gvam~Na~~~~k~-~A~~vt~~n~~~Gv~~~l~~ 259 (264)
T COG0561 185 PKGVSKGYALQRLAKLLGIKLEEVIAFGDSTNDIEMLEVAG---LGVAMGNADEELKE-LADYVTTSNDEDGVAEALEK 259 (264)
T ss_pred cCCCchHHHHHHHHHHhCCCHHHeEEeCCccccHHHHHhcC---eeeeccCCCHHHHh-hCCcccCCccchHHHHHHHH
Confidence 45677888999999999999999999999999999999999 55666655555555 45577777777666666543
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00058 Score=80.81 Aligned_cols=201 Identities=17% Similarity=0.188 Sum_probs=121.9
Q ss_pred eEEEeecCCeEEEEeC--CCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEE-E-CCCCE
Q 001380 605 KLAIDILNNRLFISDS--NHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVA-D-TENHA 680 (1089)
Q Consensus 605 ~vavd~~~g~L~vsd~--~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVa-D-~~n~~ 680 (1089)
..+++|++.+|+++.. ++..|++++.++.....+... . | .....+++|+|+.|+++ + .++..
T Consensus 200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~-~-g------------~~~~~~~SPDG~~la~~~~~~g~~~ 265 (427)
T PRK02889 200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANF-K-G------------SNSAPAWSPDGRTLAVALSRDGNSQ 265 (427)
T ss_pred cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecC-C-C------------CccceEECCCCCEEEEEEccCCCce
Confidence 3467775666665543 345799999875444444321 1 1 12467899999877764 3 34568
Q ss_pred EEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC--CCcEEEEEECCCCeEEEEeCCCc
Q 001380 681 LREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA--GQHQIWEHSTVDGVTRAFSGDGY 758 (1089)
Q Consensus 681 I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~--~~~~I~~~~~~~g~~~~~~g~g~ 758 (1089)
|+.+|.+++..+.+.... + .....+|+|+|..|+++.. +..+||.++..++..+.+...+.
T Consensus 266 Iy~~d~~~~~~~~lt~~~--~---------------~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~ 328 (427)
T PRK02889 266 IYTVNADGSGLRRLTQSS--G---------------IDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGS 328 (427)
T ss_pred EEEEECCCCCcEECCCCC--C---------------CCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCC
Confidence 999998887776664211 0 1234579999988776542 45689999988776655542110
Q ss_pred cccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCC--CeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccc
Q 001380 759 ERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSES--SSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLL 836 (1089)
Q Consensus 759 ~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~--~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l 836 (1089)
.....+++|+|+.|+++.... ..|+.+++.++..+.+..+.
T Consensus 329 ---------------~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~---------------------- 371 (427)
T PRK02889 329 ---------------YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTT---------------------- 371 (427)
T ss_pred ---------------CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCC----------------------
Confidence 112457899998887765443 37899998877765543210
Q ss_pred cCceEEEEccCCc-E-EEEeCCC-CEEEEEeCCCCeEEEEe
Q 001380 837 QHPLGVYCAKNGQ-I-YVADSYN-HKIKKLDPASNRVSTLA 874 (1089)
Q Consensus 837 ~~P~gva~~~~G~-l-yVaD~~n-~~I~~~d~~~~~v~t~~ 874 (1089)
.-....+++||+ | |.++.++ ..+..++.++.....+.
T Consensus 372 -~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~ 411 (427)
T PRK02889 372 -RDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLS 411 (427)
T ss_pred -CccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEee
Confidence 012347888985 3 4444333 34777787665555553
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.002 Score=69.49 Aligned_cols=229 Identities=16% Similarity=0.170 Sum_probs=129.8
Q ss_pred CCEEEEEeC-CCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCC
Q 001380 622 HNRIVVTDL-DGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTK 700 (1089)
Q Consensus 622 ~~~I~~~~~-~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~ 700 (1089)
++.|..+|+ +|+.+...... .. +..+...++.. ++.+|+++ .++.|+.+|..+|++.--......
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~-~~-----------~~~~~~~~~~~-~~~v~~~~-~~~~l~~~d~~tG~~~W~~~~~~~ 67 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLG-PG-----------IGGPVATAVPD-GGRVYVAS-GDGNLYALDAKTGKVLWRFDLPGP 67 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECS-SS-----------CSSEEETEEEE-TTEEEEEE-TTSEEEEEETTTSEEEEEEECSSC
T ss_pred CCEEEEEECCCCCEEEEEECC-CC-----------CCCccceEEEe-CCEEEEEc-CCCEEEEEECCCCCEEEEeecccc
Confidence 467888887 68888776542 10 12222224543 45599995 688999999877775433321110
Q ss_pred CCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEE-eCCCccccCCCCCCCCccccCCceEE
Q 001380 701 GSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAF-SGDGYERNLNGSSSLNTSFAQPSGIS 779 (1089)
Q Consensus 701 ~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~-~g~g~~~~~~g~~~~~~~~~~P~gla 779 (1089)
+..+ ..++ ++.+|+.... ++|+.+|..+|.+..- .....+ ...+..+...+
T Consensus 68 --------------~~~~--~~~~--~~~v~v~~~~-~~l~~~d~~tG~~~W~~~~~~~~---------~~~~~~~~~~~ 119 (238)
T PF13360_consen 68 --------------ISGA--PVVD--GGRVYVGTSD-GSLYALDAKTGKVLWSIYLTSSP---------PAGVRSSSSPA 119 (238)
T ss_dssp --------------GGSG--EEEE--TTEEEEEETT-SEEEEEETTTSCEEEEEEE-SSC---------TCSTB--SEEE
T ss_pred --------------ccce--eeec--ccccccccce-eeeEecccCCcceeeeecccccc---------ccccccccCce
Confidence 1111 2232 4589988844 4999999888876543 221100 01133344455
Q ss_pred EcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCE
Q 001380 780 LSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHK 859 (1089)
Q Consensus 780 v~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~ 859 (1089)
++ ++.+|++.. ++.|+.+++++|....-... +...+...-..+....+-.+-.+|.+|++.....
T Consensus 120 ~~--~~~~~~~~~-~g~l~~~d~~tG~~~w~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~- 184 (238)
T PF13360_consen 120 VD--GDRLYVGTS-SGKLVALDPKTGKLLWKYPV-----------GEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR- 184 (238)
T ss_dssp EE--TTEEEEEET-CSEEEEEETTTTEEEEEEES-----------STT-SS--EEEETTEEEEEECCTTEEEEECCTSS-
T ss_pred Ee--cCEEEEEec-cCcEEEEecCCCcEEEEeec-----------CCCCCCcceeeecccccceEEECCEEEEEcCCCe-
Confidence 55 448888875 68999999988766422211 0000000000112222333333668999886654
Q ss_pred EEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 860 IKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 860 I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
+..+|..++... +... +..+.++....++.||+.+ .+++|..+++.++
T Consensus 185 ~~~~d~~tg~~~-w~~~--------------~~~~~~~~~~~~~~l~~~~-~~~~l~~~d~~tG 232 (238)
T PF13360_consen 185 VVAVDLATGEKL-WSKP--------------ISGIYSLPSVDGGTLYVTS-SDGRLYALDLKTG 232 (238)
T ss_dssp EEEEETTTTEEE-EEEC--------------SS-ECECEECCCTEEEEEE-TTTEEEEEETTTT
T ss_pred EEEEECCCCCEE-EEec--------------CCCccCCceeeCCEEEEEe-CCCEEEEEECCCC
Confidence 666699888755 3321 2234443344466899998 7899999999887
|
... |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00056 Score=80.92 Aligned_cols=202 Identities=16% Similarity=0.186 Sum_probs=124.3
Q ss_pred eEEEeecCCeEEEE-e-CCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC--CCCE
Q 001380 605 KLAIDILNNRLFIS-D-SNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT--ENHA 680 (1089)
Q Consensus 605 ~vavd~~~g~L~vs-d-~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~--~n~~ 680 (1089)
..+++|++.+|.++ . .+...|+.++.++.....+... .. ....++++|+|+.|+++.. ++..
T Consensus 203 ~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~-~~-------------~~~~~~~SPDG~~La~~~~~~g~~~ 268 (429)
T PRK03629 203 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-PR-------------HNGAPAFSPDGSKLAFALSKTGSLN 268 (429)
T ss_pred eeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC-CC-------------CcCCeEECCCCCEEEEEEcCCCCcE
Confidence 45777755555543 2 2345688777764433333221 00 1134689999988877633 3457
Q ss_pred EEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEE-C-CCcEEEEEECCCCeEEEEeCCCc
Q 001380 681 LREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAM-A-GQHQIWEHSTVDGVTRAFSGDGY 758 (1089)
Q Consensus 681 I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad-~-~~~~I~~~~~~~g~~~~~~g~g~ 758 (1089)
|+.+|.+++.++.+.... ......+|+|+|+.|+++. . +..+||.++..++....+...+
T Consensus 269 I~~~d~~tg~~~~lt~~~-----------------~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~- 330 (429)
T PRK03629 269 LYVMDLASGQIRQVTDGR-----------------SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEG- 330 (429)
T ss_pred EEEEECCCCCEEEccCCC-----------------CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCC-
Confidence 999999988887775221 1234578999998775554 3 3458999999888776664221
Q ss_pred cccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCC--CeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccc
Q 001380 759 ERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSES--SSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLL 836 (1089)
Q Consensus 759 ~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~--~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l 836 (1089)
......+++|||+.|+++...+ ..|+.++++++..+.+.... .
T Consensus 331 --------------~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~------------~--------- 375 (429)
T PRK03629 331 --------------SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTF------------L--------- 375 (429)
T ss_pred --------------CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCC------------C---------
Confidence 1123578899998887765443 46888898877766553210 0
Q ss_pred cCceEEEEccCCc-EEEEeCC--CCEEEEEeCCCCeEEEEec
Q 001380 837 QHPLGVYCAKNGQ-IYVADSY--NHKIKKLDPASNRVSTLAG 875 (1089)
Q Consensus 837 ~~P~gva~~~~G~-lyVaD~~--n~~I~~~d~~~~~v~t~~g 875 (1089)
-....+++||+ |+.+... ...+..++.+++...++.+
T Consensus 376 --~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~ 415 (429)
T PRK03629 376 --DETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPA 415 (429)
T ss_pred --CCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECcc
Confidence 01235788995 4444332 3346778887777777753
|
|
| >TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459 | Back alignment and domain information |
|---|
Probab=98.14 E-value=5e-06 Score=90.27 Aligned_cols=89 Identities=16% Similarity=0.262 Sum_probs=76.6
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHH--HHHHHCCCCCC-CccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCc
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVD--ANLAAAGLPVS-MFDAIVSADAFENLKPAPDIFLSASKILNVPTSE 241 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~--~~l~~~gl~~~-~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~ 241 (1089)
.++||+.++|++|+++|++++++||+.+.... ..++++|+. . +|+.|+++++... ..+.++++++++++++
T Consensus 24 ~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~-~~~~~~Ii~s~~~~~-----~~l~~~~~~~~~~~~~ 97 (242)
T TIGR01459 24 HTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGIN-ADLPEMIISSGEIAV-----QMILESKKRFDIRNGI 97 (242)
T ss_pred ccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCC-ccccceEEccHHHHH-----HHHHhhhhhccCCCce
Confidence 57999999999999999999999998776655 789999997 6 8999999986653 5777778889999999
Q ss_pred EEEEcCChhhHHHHHHcC
Q 001380 242 CIVIEDALAGVQAAKAAQ 259 (1089)
Q Consensus 242 ~v~VGD~~~Di~aA~~aG 259 (1089)
+++|||+..|+......|
T Consensus 98 ~~~vGd~~~d~~~~~~~~ 115 (242)
T TIGR01459 98 IYLLGHLENDIINLMQCY 115 (242)
T ss_pred EEEeCCcccchhhhcCCC
Confidence 999999998888775544
|
This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily) |
| >PHA03398 viral phosphatase superfamily protein; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.1e-05 Score=86.73 Aligned_cols=85 Identities=19% Similarity=0.230 Sum_probs=64.9
Q ss_pred CccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCC-------------------------
Q 001380 167 FPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENL------------------------- 221 (1089)
Q Consensus 167 ~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~------------------------- 221 (1089)
-|++.++|++|+++|++++|+||+.++.+...++.+|+. .+|+.+++++.....
T Consensus 150 dp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~-~yFDvII~~g~i~~k~~~~~~~d~~~~~~~~~~~f~~d~~ 228 (303)
T PHA03398 150 DPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLE-GYFDIIICGGRKAGEYSRRVIVDNKYKMVFVKKPFYLDVT 228 (303)
T ss_pred ChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCC-ccccEEEECCCcccccccceeecccceeEEecCceeEeCC
Confidence 389999999999999999999999999999999999997 999999998754321
Q ss_pred ----CC-CHHHHHHHHHHcCCCC-CcEEEEcCCh-hhH
Q 001380 222 ----KP-APDIFLSASKILNVPT-SECIVIEDAL-AGV 252 (1089)
Q Consensus 222 ----KP-~~~~~~~~l~~lgv~p-~~~v~VGD~~-~Di 252 (1089)
-| +|.+....+++.|+.. +.+-.|.|=. ||+
T Consensus 229 ~~~~lPKSprvVl~yL~~~gvn~~KtiTLVDDl~~Nn~ 266 (303)
T PHA03398 229 DVKNLPKSPRVVLWYLRKKGVNYFKTITLVDDLKSNNY 266 (303)
T ss_pred cccCCCCCCeehHHHHHHcCcceeccEEEeccCcccCc
Confidence 11 3455666677777654 4455565555 443
|
|
| >PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.2e-05 Score=85.68 Aligned_cols=83 Identities=16% Similarity=0.174 Sum_probs=55.2
Q ss_pred HHHHhCCCeEEEE---cCCChHhHHHHHHHCCCCC---CCccEEEEcCCccCCCCCHHHHHHHHHHcCCCC-CcEEEEcC
Q 001380 175 NQCKSKGLKVAVA---SSADRIKVDANLAAAGLPV---SMFDAIVSADAFENLKPAPDIFLSASKILNVPT-SECIVIED 247 (1089)
Q Consensus 175 ~~Lk~~Gi~vaIv---Sn~~~~~~~~~l~~~gl~~---~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p-~~~v~VGD 247 (1089)
+.++..++...++ +....+.+...++..++.. .++. +-...+ .+...++++++++|+++ +++++|||
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----ei~~~~-~Kg~al~~l~~~~~i~~~~~v~~~GD 215 (273)
T PRK00192 142 RLAKDREFSEPFLWNGSEAAKERFEEALKRLGLKVTRGGRFL-----HLLGGG-DKGKAVRWLKELYRRQDGVETIALGD 215 (273)
T ss_pred HHHHhcccCCceeecCchHHHHHHHHHHHHcCCEEEECCeEE-----EEeCCC-CHHHHHHHHHHHHhccCCceEEEEcC
Confidence 3345555655555 4334455555566555420 1111 222234 56778999999999999 99999999
Q ss_pred ChhhHHHHHHcCCeEE
Q 001380 248 ALAGVQAAKAAQMRCI 263 (1089)
Q Consensus 248 ~~~Di~aA~~aG~~~i 263 (1089)
+.||+.|++.+|+.++
T Consensus 216 s~NDi~m~~~ag~~va 231 (273)
T PRK00192 216 SPNDLPMLEAADIAVV 231 (273)
T ss_pred ChhhHHHHHhCCeeEE
Confidence 9999999999995433
|
|
| >COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.1e-05 Score=74.52 Aligned_cols=117 Identities=17% Similarity=0.143 Sum_probs=95.5
Q ss_pred CCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEec-CCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhc
Q 001380 424 RKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWT-YCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKD 502 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa-~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~ 502 (1089)
.++|+++|+|++... +.+.+++ .+++||..+|+.+- -..+-|-.+...+++...++.+ ..++.||. |-
T Consensus 18 ~~vGd~ap~ftl~~~--dL~~v~l-~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~--~~Vl~IS~------DL 86 (158)
T COG2077 18 PQVGDKAPDFTLVGK--DLNDVSL-ADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN--TVVLCISM------DL 86 (158)
T ss_pred CccCCcCCceEEEcC--cccceec-cccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC--cEEEEEeC------CC
Confidence 579999999997654 6667888 89999998888774 5677799999999999888764 77888875 67
Q ss_pred HHHHHHHHHHcCCc-cceeecC-ChhHHHHhCCC--ce-------eEEEEECCCCcEEEE
Q 001380 503 LEAIRNAVLRYGIS-HPVVNDG-DMNLWRELGVN--SW-------PTFAVVGPNGKLLAQ 551 (1089)
Q Consensus 503 ~~~~~~~~~~~~~~-~~v~~d~-~~~l~~~~~v~--~~-------Pt~~lid~~G~i~~~ 551 (1089)
+-+..+|+...|++ ...+.|- +.++.++|||. .. .+.|++|.+|++++.
T Consensus 87 PFAq~RfC~aeGi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~ 146 (158)
T COG2077 87 PFAQKRFCGAEGIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYS 146 (158)
T ss_pred hhHHhhhhhhcCcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEE
Confidence 88899999999998 4566664 55688999973 33 488999999999987
|
|
| >COG4087 Soluble P-type ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.4e-05 Score=73.45 Aligned_cols=120 Identities=17% Similarity=0.262 Sum_probs=95.4
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEE
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECI 243 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v 243 (1089)
..+|+.+.+.+++|++. +.++|+|+...-.+...++-.|++ .+.++... ++++-..+++.++-+-+.|+
T Consensus 29 Gklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~~gi~---~~rv~a~a-------~~e~K~~ii~eLkk~~~k~v 97 (152)
T COG4087 29 GKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLAEFVGIP---VERVFAGA-------DPEMKAKIIRELKKRYEKVV 97 (152)
T ss_pred cEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHHHHcCCc---eeeeeccc-------CHHHHHHHHHHhcCCCcEEE
Confidence 47899999999999999 999999998888899999999998 55555443 35777888899988779999
Q ss_pred EEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhc
Q 001380 244 VIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTG 297 (1089)
Q Consensus 244 ~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~ 297 (1089)
||||+.||+.+.++|.+-.+-+..+...+.+.. .+|+++.++.++ -+++..
T Consensus 98 mVGnGaND~laLr~ADlGI~tiq~e~v~~r~l~-~ADvvik~i~e~--ldl~~~ 148 (152)
T COG4087 98 MVGNGANDILALREADLGICTIQQEGVPERLLL-TADVVLKEIAEI--LDLLKD 148 (152)
T ss_pred EecCCcchHHHhhhcccceEEeccCCcchHHHh-hchhhhhhHHHH--HHHhhc
Confidence 999999999999999877666654433333333 588999988877 555543
|
|
| >TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.9e-06 Score=90.80 Aligned_cols=109 Identities=10% Similarity=0.088 Sum_probs=72.0
Q ss_pred CCeEEEEcCCC----hHhHHHHHHHCCCCCCCccEEEEc----CCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhH
Q 001380 181 GLKVAVASSAD----RIKVDANLAAAGLPVSMFDAIVSA----DAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGV 252 (1089)
Q Consensus 181 Gi~vaIvSn~~----~~~~~~~l~~~gl~~~~fd~i~~~----~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di 252 (1089)
.+++.+..... .+.+...++..+.. +..+.++ +-...+++|...++.+++++|++++++++|||+.||+
T Consensus 112 ~~~i~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~ei~~~~~~K~~al~~l~~~~g~~~~~~i~~GD~~nD~ 188 (236)
T TIGR02471 112 PFKISYLLDPEGEPILPQIRQRLRQQSQA---AKVILSCGWFLDVLPLRASKGLALRYLSYRWGLPLEQILVAGDSGNDE 188 (236)
T ss_pred CeeEEEEECcccchHHHHHHHHHHhccCC---EEEEEECCceEEEeeCCCChHHHHHHHHHHhCCCHHHEEEEcCCccHH
Confidence 35666665432 12344555555543 3445555 3455678999999999999999999999999999999
Q ss_pred HHHHHcCCeEEEEcCCCCHHHHhhcCCc----EEecCcccCCHHHHHh
Q 001380 253 QAAKAAQMRCIAVTTTLSEERLKEASPS----LIRKEIGSVSLNDILT 296 (1089)
Q Consensus 253 ~aA~~aG~~~i~V~~g~~~~~l~~~~~d----~vi~dl~el~i~~ll~ 296 (1089)
.|.+.+|.. +.+ +...+++++. ++ ++..+-.+-.+.+.|.
T Consensus 189 ~ml~~~~~~-iav--~na~~~~k~~-a~~~~~~v~~~~~~~Gv~~~i~ 232 (236)
T TIGR02471 189 EMLRGLTLG-VVV--GNHDPELEGL-RHQQRIYFANNPHAFGILEGIN 232 (236)
T ss_pred HHHcCCCcE-EEE--cCCcHHHHHh-hcCCcEEEcCCCChhHHHHHHH
Confidence 999999843 333 4455566553 44 6665544444455543
|
Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472. |
| >TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase | Back alignment and domain information |
|---|
Probab=98.11 E-value=7.6e-06 Score=99.61 Aligned_cols=117 Identities=14% Similarity=0.160 Sum_probs=86.2
Q ss_pred CCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcE
Q 001380 163 SGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSEC 242 (1089)
Q Consensus 163 ~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~ 242 (1089)
...++||+.+++++|+++|++++++|+.....++.+++++|++ ++ ++ . ..++|.+ .+++++.++++|
T Consensus 403 ~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~--~~-----~~-~-~p~~K~~----~v~~l~~~~~~v 469 (562)
T TIGR01511 403 EDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN--VR-----AE-V-LPDDKAA----LIKELQEKGRVV 469 (562)
T ss_pred cccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc--EE-----cc-C-ChHHHHH----HHHHHHHcCCEE
Confidence 3467999999999999999999999999999999999999994 22 11 1 1123333 444444467899
Q ss_pred EEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEec--CcccCCHHHHHhcc
Q 001380 243 IVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRK--EIGSVSLNDILTGG 298 (1089)
Q Consensus 243 v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~--dl~el~i~~ll~~~ 298 (1089)
+||||+.+|+.+++++|+ +|.+|.. .+.....+|+++. ++.++ .+++...
T Consensus 470 ~~VGDg~nD~~al~~A~v---gia~g~g-~~~a~~~Advvl~~~~l~~l--~~~i~ls 521 (562)
T TIGR01511 470 AMVGDGINDAPALAQADV---GIAIGAG-TDVAIEAADVVLMRNDLNDV--ATAIDLS 521 (562)
T ss_pred EEEeCCCccHHHHhhCCE---EEEeCCc-CHHHHhhCCEEEeCCCHHHH--HHHHHHH
Confidence 999999999999999994 5655542 3444457898884 66555 5555443
|
One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification. |
| >PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification [] | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.2e-05 Score=84.28 Aligned_cols=67 Identities=12% Similarity=0.097 Sum_probs=52.6
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCH
Q 001380 221 LKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSL 291 (1089)
Q Consensus 221 ~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i 291 (1089)
.--|...++.+++.+|++++++++|||+.||+.|.+.+| ..|..+...++++. .++++..+-.+-.+
T Consensus 184 ~vsK~~ai~~l~~~~~i~~~~~~~~GD~~ND~~Ml~~~~---~~~am~na~~~~k~-~a~~i~~~~~~~gv 250 (254)
T PF08282_consen 184 GVSKGSAIKYLLEYLGISPEDIIAFGDSENDIEMLELAG---YSVAMGNATPELKK-AADYITPSNNDDGV 250 (254)
T ss_dssp TSSHHHHHHHHHHHHTTSGGGEEEEESSGGGHHHHHHSS---EEEEETTS-HHHHH-HSSEEESSGTCTHH
T ss_pred CCCHHHHHHHHhhhcccccceeEEeecccccHhHHhhcC---eEEEEcCCCHHHHH-hCCEEecCCCCChH
Confidence 556778899999999999999999999999999999999 34444555666655 57888877766433
|
This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A .... |
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.3e-06 Score=56.46 Aligned_cols=28 Identities=43% Similarity=0.729 Sum_probs=26.1
Q ss_pred ccCceEEEEccCCcEEEEeCCCCEEEEE
Q 001380 836 LQHPLGVYCAKNGQIYVADSYNHKIKKL 863 (1089)
Q Consensus 836 l~~P~gva~~~~G~lyVaD~~n~~I~~~ 863 (1089)
|..|.||+++++|+|||+|+.||+|++|
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4689999999999999999999999986
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.5e-06 Score=98.29 Aligned_cols=87 Identities=22% Similarity=0.398 Sum_probs=68.5
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCC-C-CEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD-M-PFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~-~-~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
.++.+||+||++||++|+.+.|.++++++++++ . ++.++.+.+. ..++..
T Consensus 363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~----------------------------~n~~~~ 414 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDAT----------------------------ANDVPP 414 (462)
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECC----------------------------CCccCC
Confidence 579999999999999999999999999999987 3 6888888541 112333
Q ss_pred HhCCCceeEEEEECCCCcE-EEEecCCCchhhHHHHHHH
Q 001380 530 ELGVNSWPTFAVVGPNGKL-LAQLAGEGHRKDLDDLVEA 567 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i-~~~~~G~~~~~~l~~~l~~ 567 (1089)
|++.++|+++++.+.++. ...+.|..+.+.+.++|.+
T Consensus 415 -~~i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~ 452 (462)
T TIGR01130 415 -FEVEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAK 452 (462)
T ss_pred -CCccccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHh
Confidence 899999999999666552 3567788788777777654
|
Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0012 Score=67.46 Aligned_cols=88 Identities=20% Similarity=0.332 Sum_probs=62.9
Q ss_pred ccCceEEEEccCC-cEEEEeCCCCEEEEEe--CCCCeEEE---EeccCCCCCCCCcccccccCCCceEEEccCCcEEEEE
Q 001380 836 LQHPLGVYCAKNG-QIYVADSYNHKIKKLD--PASNRVST---LAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIAD 909 (1089)
Q Consensus 836 l~~P~gva~~~~G-~lyVaD~~n~~I~~~d--~~~~~v~t---~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad 909 (1089)
+.-|.|+++|.+. ..|+.|+.|+.|..+| -.||.++. +-.-... ..-.-..|.|+++|.+|+||||-
T Consensus 157 v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~-------~~~e~~~PDGm~ID~eG~L~Va~ 229 (310)
T KOG4499|consen 157 VGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKS-------QPFESLEPDGMTIDTEGNLYVAT 229 (310)
T ss_pred ccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccC-------CCcCCCCCCcceEccCCcEEEEE
Confidence 4468899999765 6999999999996655 55654431 1100000 01123569999999999999999
Q ss_pred CCCCEEEEEeCCCCCceEEEEe
Q 001380 910 TNNNIIRYLDLNKEEPELQTLE 931 (1089)
Q Consensus 910 ~~n~~I~~~~~~~~~~~~~~l~ 931 (1089)
.+.++|.++++.++ ..+.++.
T Consensus 230 ~ng~~V~~~dp~tG-K~L~eik 250 (310)
T KOG4499|consen 230 FNGGTVQKVDPTTG-KILLEIK 250 (310)
T ss_pred ecCcEEEEECCCCC-cEEEEEE
Confidence 99999999999887 3445554
|
|
| >TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.1e-05 Score=103.45 Aligned_cols=127 Identities=15% Similarity=0.234 Sum_probs=100.3
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccC----------------CCCCHHH
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFEN----------------LKPAPDI 227 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~----------------~KP~~~~ 227 (1089)
.+++||+.+.++.|+++|+++.++|+.+...+..+.+++|+. ..++.++++++... ....|+-
T Consensus 527 Dp~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~Gi~-~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~P~~ 605 (884)
T TIGR01522 527 DPPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIARRLGMP-SKTSQSVSGEKLDAMDDQQLSQIVPKVAVFARASPEH 605 (884)
T ss_pred CcchhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCC-CCCCceeEhHHhHhCCHHHHHHHhhcCeEEEECCHHH
Confidence 367999999999999999999999999999999999999996 66666666654432 3366666
Q ss_pred HHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEe--cCcccCCHHHHHh
Q 001380 228 FLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIR--KEIGSVSLNDILT 296 (1089)
Q Consensus 228 ~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi--~dl~el~i~~ll~ 296 (1089)
-..+.+.++-..+.+.||||+.||+.|.++|+ ++|..|.+..+.....+|+++ ++|..+ .+.+.
T Consensus 606 K~~iv~~lq~~g~~v~mvGDGvND~pAl~~Ad---VGia~g~~g~~va~~aaDivl~dd~~~~i--~~~i~ 671 (884)
T TIGR01522 606 KMKIVKALQKRGDVVAMTGDGVNDAPALKLAD---IGVAMGQTGTDVAKEAADMILTDDDFATI--LSAIE 671 (884)
T ss_pred HHHHHHHHHHCCCEEEEECCCcccHHHHHhCC---eeEecCCCcCHHHHHhcCEEEcCCCHHHH--HHHHH
Confidence 67777777666788999999999999999999 677776544555556789998 557666 44443
|
The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0012 Score=78.43 Aligned_cols=201 Identities=17% Similarity=0.157 Sum_probs=124.1
Q ss_pred eEEEeecCCeEE-EEeC-CCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEE--CCCCE
Q 001380 605 KLAIDILNNRLF-ISDS-NHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVAD--TENHA 680 (1089)
Q Consensus 605 ~vavd~~~g~L~-vsd~-~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD--~~n~~ 680 (1089)
..+++|++.+|+ +++. ++..|++++.++.....+... . | .....+++|+|+.|+++- .++..
T Consensus 203 ~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~--~----g--------~~~~~~~SpDG~~la~~~~~~g~~~ 268 (430)
T PRK00178 203 SPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF--E----G--------LNGAPAWSPDGSKLAFVLSKDGNPE 268 (430)
T ss_pred eeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC--C----C--------CcCCeEECCCCCEEEEEEccCCCce
Confidence 456777666664 4443 345788888875444443221 0 0 113578899998776543 23458
Q ss_pred EEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC--CCcEEEEEECCCCeEEEEeCCCc
Q 001380 681 LREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA--GQHQIWEHSTVDGVTRAFSGDGY 758 (1089)
Q Consensus 681 I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~--~~~~I~~~~~~~g~~~~~~g~g~ 758 (1089)
|+.+|++++..+.+..... ......|+|+|+.|+++.. +..+|+.++..++....+...+.
T Consensus 269 Iy~~d~~~~~~~~lt~~~~-----------------~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~ 331 (430)
T PRK00178 269 IYVMDLASRQLSRVTNHPA-----------------IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGN 331 (430)
T ss_pred EEEEECCCCCeEEcccCCC-----------------CcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC
Confidence 9999999988877653110 1234578999988877653 34689999988887766542110
Q ss_pred cccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCC--eEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccc
Q 001380 759 ERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESS--SIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLL 836 (1089)
Q Consensus 759 ~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~--~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l 836 (1089)
.....+++|+|+.|+++....+ .|..+++.++..+.+.... . -
T Consensus 332 ---------------~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~------------~--------~ 376 (430)
T PRK00178 332 ---------------YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTS------------L--------D 376 (430)
T ss_pred ---------------CccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCC------------C--------C
Confidence 1124578999999988875443 6888898887776553210 0 0
Q ss_pred cCceEEEEccCCc-EEEEeC--CCCEEEEEeCCCCeEEEEe
Q 001380 837 QHPLGVYCAKNGQ-IYVADS--YNHKIKKLDPASNRVSTLA 874 (1089)
Q Consensus 837 ~~P~gva~~~~G~-lyVaD~--~n~~I~~~d~~~~~v~t~~ 874 (1089)
.. ..+++||+ ++++.. +..+|..++.+++....+.
T Consensus 377 ~~---p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~ 414 (430)
T PRK00178 377 ES---PSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLP 414 (430)
T ss_pred CC---ceECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence 12 36788885 444433 2356788887766554543
|
|
| >TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.7e-05 Score=83.95 Aligned_cols=92 Identities=17% Similarity=0.198 Sum_probs=65.8
Q ss_pred hCCCeEEEEcCCCh-----HhHHHHHHHCCCCCCCccEEEEc----CCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCCh
Q 001380 179 SKGLKVAVASSADR-----IKVDANLAAAGLPVSMFDAIVSA----DAFENLKPAPDIFLSASKILNVPTSECIVIEDAL 249 (1089)
Q Consensus 179 ~~Gi~vaIvSn~~~-----~~~~~~l~~~gl~~~~fd~i~~~----~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~ 249 (1089)
+.-+++.++..... ..+...+...++. +..++++ +....+.+|...++.+++++|++++++++|||+.
T Consensus 117 ~~~~k~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~~~~~~ldi~~~~~~K~~al~~l~~~~~i~~~~~i~~GD~~ 193 (249)
T TIGR01485 117 QRPHKVSFFLDPEAAPEVIKQLTEMLKETGLD---VKLIYSSGKDLDILPQGSGKGQALQYLLQKLAMEPSQTLVCGDSG 193 (249)
T ss_pred cCCeeEEEEechhhhhHHHHHHHHHHHhcCCC---EEEEEECCceEEEEeCCCChHHHHHHHHHHcCCCccCEEEEECCh
Confidence 34467777665321 2234455555554 3445555 4455688999999999999999999999999999
Q ss_pred hhHHHHHHcCCeEEEEcCCCCHHHHh
Q 001380 250 AGVQAAKAAQMRCIAVTTTLSEERLK 275 (1089)
Q Consensus 250 ~Di~aA~~aG~~~i~V~~g~~~~~l~ 275 (1089)
||+.|.+.++..++.+.. ..++++
T Consensus 194 ND~~ml~~~~~~~va~~n--a~~~~k 217 (249)
T TIGR01485 194 NDIELFEIGSVRGVIVSN--AQEELL 217 (249)
T ss_pred hHHHHHHccCCcEEEECC--CHHHHH
Confidence 999999997777777755 344444
|
Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain. |
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0021 Score=69.42 Aligned_cols=215 Identities=15% Similarity=0.130 Sum_probs=114.7
Q ss_pred eEEEEeCCCCEEEEE--eCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeE
Q 001380 614 RLFISDSNHNRIVVT--DLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTV 691 (1089)
Q Consensus 614 ~L~vsd~~~~~I~~~--~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v 691 (1089)
.|.++-...+++..+ +++|... .. +..|..|.|+++.+ +.||++- -..|+++--.....
T Consensus 19 Sla~sTYQagkL~~ig~~~~g~l~-~~--------------~r~F~r~MGl~~~~--~~l~~~t--~~qiw~f~~~~n~l 79 (335)
T TIGR03032 19 SLAVTTYQAGKLFFIGLQPNGELD-VF--------------ERTFPRPMGLAVSP--QSLTLGT--RYQLWRFANVDNLL 79 (335)
T ss_pred EEEEEeeecceEEEEEeCCCCcEE-EE--------------eeccCccceeeeeC--CeEEEEE--cceeEEcccccccc
Confidence 466666777777766 4455532 21 23488999999964 5599987 45677772211111
Q ss_pred EEEecCCCCCCCCCC-CCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCc
Q 001380 692 RTLAGNGTKGSDYQG-GEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNT 770 (1089)
Q Consensus 692 ~~~ag~g~~~~~~~~-~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~ 770 (1089)
..... ..+++..- ....-...--.-++|++ . ++.+|+.+..-+++-.+++....+-.+...=... .. ..
T Consensus 80 ~~~~~--~~~~D~~yvPr~~~~TGdidiHdia~-~-~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~-----la-~e 149 (335)
T TIGR03032 80 PAGQT--HPGYDRLYVPRASYVTGDIDAHDLAL-G-AGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISK-----LA-PE 149 (335)
T ss_pred ccccc--CCCCCeEEeeeeeeeccCcchhheee-c-CCcEEEEECcceeEEEECCCCccccccCCccccc-----cC-cc
Confidence 11000 00111000 00000000125678888 3 3478888888888888887665544443110000 00 11
Q ss_pred cccCCceEEEcCCCCEEEEEeCCCC----eEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEcc
Q 001380 771 SFAQPSGISLSPDFMEIYVADSESS----SIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAK 846 (1089)
Q Consensus 771 ~~~~P~glav~~~g~~lyvad~~~~----~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~ 846 (1089)
--.+-+|||+. +|+--||+-.... .-|.-..++|.+.-+..+ .. .-.-|..|.+--+-
T Consensus 150 DRCHLNGlA~~-~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~-ev---------------l~~GLsmPhSPRWh- 211 (335)
T TIGR03032 150 DRCHLNGMALD-DGEPRYVTALSQSDVADGWREGRRDGGCVIDIPSG-EV---------------VASGLSMPHSPRWY- 211 (335)
T ss_pred Cceeecceeee-CCeEEEEEEeeccCCcccccccccCCeEEEEeCCC-CE---------------EEcCccCCcCCcEe-
Confidence 12356899996 4657787654321 111111121211111110 00 00115566665553
Q ss_pred CCcEEEEeCCCCEEEEEeCCCCeEEEEec
Q 001380 847 NGQIYVADSYNHKIKKLDPASNRVSTLAG 875 (1089)
Q Consensus 847 ~G~lyVaD~~n~~I~~~d~~~~~v~t~~g 875 (1089)
+|++|++|++.++|.++|+++|....++-
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~e~Va~ 240 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKFQPVAF 240 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcEEEEEE
Confidence 79999999999999999999888888764
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.4e-05 Score=72.02 Aligned_cols=84 Identities=18% Similarity=0.210 Sum_probs=54.9
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCC---hHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCc
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSAD---RIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSE 241 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~---~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~ 241 (1089)
.++||+.++|+.|+++|++++++||++ ++.....|+.+|+. --.+.|+++. ......+++. ....+
T Consensus 14 ~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~-~~~~~i~ts~---------~~~~~~l~~~-~~~~~ 82 (101)
T PF13344_consen 14 EPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIP-VDEDEIITSG---------MAAAEYLKEH-KGGKK 82 (101)
T ss_dssp EE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT---GGGEEEHH---------HHHHHHHHHH-TTSSE
T ss_pred CcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcC-CCcCEEEChH---------HHHHHHHHhc-CCCCE
Confidence 468999999999999999999999974 35566677899997 3336666664 2233344432 23477
Q ss_pred EEEEcCChhhHHHHHHcCC
Q 001380 242 CIVIEDALAGVQAAKAAQM 260 (1089)
Q Consensus 242 ~v~VGD~~~Di~aA~~aG~ 260 (1089)
++++|-. ...+..+.+|+
T Consensus 83 v~vlG~~-~l~~~l~~~G~ 100 (101)
T PF13344_consen 83 VYVLGSD-GLREELREAGF 100 (101)
T ss_dssp EEEES-H-HHHHHHHHTTE
T ss_pred EEEEcCH-HHHHHHHHcCC
Confidence 8888855 44555556653
|
... |
| >PRK10671 copA copper exporting ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.3e-05 Score=102.49 Aligned_cols=117 Identities=16% Similarity=0.218 Sum_probs=91.1
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEE
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECI 243 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v 243 (1089)
..++||+.+.|++|++.|++++++|+......+.+++++|+. .++..+ . |+.-.+++++++..+++++
T Consensus 649 d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi~-~~~~~~---------~--p~~K~~~i~~l~~~~~~v~ 716 (834)
T PRK10671 649 DPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGID-EVIAGV---------L--PDGKAEAIKRLQSQGRQVA 716 (834)
T ss_pred CcchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC-EEEeCC---------C--HHHHHHHHHHHhhcCCEEE
Confidence 467899999999999999999999999999999999999996 443321 1 2334567788888889999
Q ss_pred EEcCChhhHHHHHHcCCeEEEEcCCC-CHHHHhhcCCcEEecCcccCCHHHHHhc
Q 001380 244 VIEDALAGVQAAKAAQMRCIAVTTTL-SEERLKEASPSLIRKEIGSVSLNDILTG 297 (1089)
Q Consensus 244 ~VGD~~~Di~aA~~aG~~~i~V~~g~-~~~~l~~~~~d~vi~dl~el~i~~ll~~ 297 (1089)
||||+.||+.+++++|+ +|.+|. +......+.+.+..+++.++ .+++..
T Consensus 717 ~vGDg~nD~~al~~Agv---gia~g~g~~~a~~~ad~vl~~~~~~~i--~~~i~l 766 (834)
T PRK10671 717 MVGDGINDAPALAQADV---GIAMGGGSDVAIETAAITLMRHSLMGV--ADALAI 766 (834)
T ss_pred EEeCCHHHHHHHHhCCe---eEEecCCCHHHHHhCCEEEecCCHHHH--HHHHHH
Confidence 99999999999999996 555555 45555555566666777766 555543
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0017 Score=77.34 Aligned_cols=234 Identities=18% Similarity=0.290 Sum_probs=155.7
Q ss_pred EEEeecCCeEEEEeCCCCEEEEEeCC-CC--EEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEE
Q 001380 606 LAIDILNNRLFISDSNHNRIVVTDLD-GN--FIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALR 682 (1089)
Q Consensus 606 vavd~~~g~L~vsd~~~~~I~~~~~~-g~--~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~ 682 (1089)
+.+.+ +|+.+++-.....|..++.. ++ ......+ .-..-.++++.++|. ..++-.....|+
T Consensus 165 ~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~--------------h~~~v~~~~fs~d~~-~l~s~s~D~tir 228 (456)
T KOG0266|consen 165 VDFSP-DGRALAAASSDGLIRIWKLEGIKSNLLRELSG--------------HTRGVSDVAFSPDGS-YLLSGSDDKTLR 228 (456)
T ss_pred EEEcC-CCCeEEEccCCCcEEEeecccccchhhccccc--------------cccceeeeEECCCCc-EEEEecCCceEE
Confidence 45565 55555555555666666553 22 2222211 123458999999998 677777789999
Q ss_pred EEEC-CCC-eEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEE-EEeCCCcc
Q 001380 683 EIDF-VND-TVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTR-AFSGDGYE 759 (1089)
Q Consensus 683 ~~d~-~~g-~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~-~~~g~g~~ 759 (1089)
.+|. +.+ .++++.|.. .....++|+|.+ .++++....+.|+.||..++++. .+.+..
T Consensus 229 iwd~~~~~~~~~~l~gH~-----------------~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs-- 288 (456)
T KOG0266|consen 229 IWDLKDDGRNLKTLKGHS-----------------TYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHS-- 288 (456)
T ss_pred EeeccCCCeEEEEecCCC-----------------CceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccC--
Confidence 9998 443 456665433 255899999999 88888888999999999886654 444321
Q ss_pred ccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCe---EEEecCCCCCCCCccccCCCCCccccccc
Q 001380 760 RNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGS---RLLAGGDPIFPDNLFKFGDRDGMGSEVLL 836 (1089)
Q Consensus 760 ~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~---~~~~g~~~~~~~~l~~~g~~dg~~~~~~l 836 (1089)
..-++++++++|+.|+.+ +..+.|+.++..++.. ..+.+.
T Consensus 289 -------------~~is~~~f~~d~~~l~s~-s~d~~i~vwd~~~~~~~~~~~~~~~----------------------- 331 (456)
T KOG0266|consen 289 -------------DGISGLAFSPDGNLLVSA-SYDGTIRVWDLETGSKLCLKLLSGA----------------------- 331 (456)
T ss_pred -------------CceEEEEECCCCCEEEEc-CCCccEEEEECCCCceeeeecccCC-----------------------
Confidence 245689999999555555 7799999999997763 233221
Q ss_pred cCc---eEEEEccCCcEEEEeCCCCEEEEEeCCCC-eEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCC
Q 001380 837 QHP---LGVYCAKNGQIYVADSYNHKIKKLDPASN-RVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNN 912 (1089)
Q Consensus 837 ~~P---~gva~~~~G~lyVaD~~n~~I~~~d~~~~-~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n 912 (1089)
..+ ..+.++++|...++-+.++.++.+|...+ .+.++.+.... ...........+|...++....
T Consensus 332 ~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~i~sg~~d 400 (456)
T KOG0266|consen 332 ENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNL-----------VRCIFSPTLSTGGKLIYSGSED 400 (456)
T ss_pred CCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCc-----------ceeEecccccCCCCeEEEEeCC
Confidence 123 56788899988888888888999887643 44455432110 0112222234567788888888
Q ss_pred CEEEEEeCCCC
Q 001380 913 NIIRYLDLNKE 923 (1089)
Q Consensus 913 ~~I~~~~~~~~ 923 (1089)
+.|..+++.+.
T Consensus 401 ~~v~~~~~~s~ 411 (456)
T KOG0266|consen 401 GSVYVWDSSSG 411 (456)
T ss_pred ceEEEEeCCcc
Confidence 99999999875
|
|
| >COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00036 Score=78.98 Aligned_cols=231 Identities=17% Similarity=0.200 Sum_probs=127.1
Q ss_pred CCCCCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCC-EEE---EEecCCCCCCCCCCCCccccCCcceeEEeeCCCE
Q 001380 595 LFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGN-FIV---QIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNL 670 (1089)
Q Consensus 595 ~~~~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~-~~~---~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~ 670 (1089)
.+++.+..|.+++.- .+.+|++.. -.+.+++ .|. .+. .|-.. .+ .+ ..++-..|+++|+|+
T Consensus 125 ~fa~~~~~~~~~a~~--~~~~~~~n~--~~~~~~~-~g~~~l~~~~~i~~~-lP---~~-----~~H~g~~l~f~pDG~- 189 (399)
T COG2133 125 DFAQGRLVYFGISEP--GGGLYVANR--VAIGRLP-GGDTKLSEPKVIFRG-IP---KG-----GHHFGGRLVFGPDGK- 189 (399)
T ss_pred cccccceeeeEEEee--cCCceEEEE--EEEEEcC-CCccccccccEEeec-CC---CC-----CCcCcccEEECCCCc-
Confidence 457788999999885 677888875 3455555 231 111 11110 11 00 123457899999995
Q ss_pred EEEEECCC-------------CEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC
Q 001380 671 LYVADTEN-------------HALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ 737 (1089)
Q Consensus 671 lyVaD~~n-------------~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~ 737 (1089)
|||+=..+ ++|.+++.++.......+.+ ...-..-+.+|.|++|+|..+.||+++.+.
T Consensus 190 Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~---------~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~ 260 (399)
T COG2133 190 LYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPN---------SEIWSYGHRNPQGLAWHPVTGALWTTEHGP 260 (399)
T ss_pred EEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCC---------cceEEeccCCccceeecCCCCcEEEEecCC
Confidence 99984433 23333332221111111101 111123367999999999988999999887
Q ss_pred cEEEEEECC----CCe-----EEEEeCCCccccC--CCCCC--------CCccccCCceEEEcCCC------CEEEEEeC
Q 001380 738 HQIWEHSTV----DGV-----TRAFSGDGYERNL--NGSSS--------LNTSFAQPSGISLSPDF------MEIYVADS 792 (1089)
Q Consensus 738 ~~I~~~~~~----~g~-----~~~~~g~g~~~~~--~g~~~--------~~~~~~~P~glav~~~g------~~lyvad~ 792 (1089)
..+.--|.. .|. ...+ |....... .+... .-+.-.-|+||++..-. +.+||+.-
T Consensus 261 d~~~~~Deln~i~~G~nYGWP~~~~-G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lfV~~h 339 (399)
T COG2133 261 DALRGPDELNSIRPGKNYGWPYAYF-GQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLFVGAH 339 (399)
T ss_pred CcccCcccccccccCCccCCceecc-CcccCccccCCCcccccccCCceeeccccccceeEEecCCcCccccCcEEEEee
Confidence 544211111 111 1111 11111110 11110 00111236899998421 48999998
Q ss_pred CCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCC-CCEEEEEeCCC
Q 001380 793 ESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSY-NHKIKKLDPAS 867 (1089)
Q Consensus 793 ~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~-n~~I~~~d~~~ 867 (1089)
.+-.+.+++++++...++.+ |-.++. -..|.+|++.+||.|||+|.. +++|.|+..++
T Consensus 340 gsw~~~~~~~~g~~~~~~~~---------fl~~d~--------~gR~~dV~v~~DGallv~~D~~~g~i~Rv~~~~ 398 (399)
T COG2133 340 GSWPVLRLRPDGNYKVVLTG---------FLSGDL--------GGRPRDVAVAPDGALLVLTDQGDGRILRVSYAG 398 (399)
T ss_pred cceeEEEeccCCCcceEEEE---------EEecCC--------CCcccceEECCCCeEEEeecCCCCeEEEecCCC
Confidence 88778888887653322221 011111 146999999999999999877 77999997653
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0036 Score=65.61 Aligned_cols=245 Identities=15% Similarity=0.213 Sum_probs=162.1
Q ss_pred CCCCCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC
Q 001380 599 PLKFPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE 677 (1089)
Q Consensus 599 ~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~ 677 (1089)
.-.+-.++++.+ +|+.+++-+-.+.+..+|.. |+..+++-+.. ....+++++++.. -.|+...
T Consensus 62 HsH~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~--------------~dVlsva~s~dn~-qivSGSr 125 (315)
T KOG0279|consen 62 HSHFVSDVVLSS-DGNFALSASWDGTLRLWDLATGESTRRFVGHT--------------KDVLSVAFSTDNR-QIVSGSR 125 (315)
T ss_pred cceEecceEEcc-CCceEEeccccceEEEEEecCCcEEEEEEecC--------------CceEEEEecCCCc-eeecCCC
Confidence 345667888886 88999999999999999998 56666666552 2458999999877 6888888
Q ss_pred CCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC-CcEEEEEECCCCeEE-EEeC
Q 001380 678 NHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG-QHQIWEHSTVDGVTR-AFSG 755 (1089)
Q Consensus 678 n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~-~~~I~~~~~~~g~~~-~~~g 755 (1089)
...|..++..++-.-++...+. -.+-..+.|+|.....+|..++ ...|..||+.+-++. .+.|
T Consensus 126 DkTiklwnt~g~ck~t~~~~~~---------------~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~g 190 (315)
T KOG0279|consen 126 DKTIKLWNTLGVCKYTIHEDSH---------------REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIG 190 (315)
T ss_pred cceeeeeeecccEEEEEecCCC---------------cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccc
Confidence 8999999988888777775442 1267789999987566666555 566778888765543 2333
Q ss_pred CCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCcccccc
Q 001380 756 DGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVL 835 (1089)
Q Consensus 756 ~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~ 835 (1089)
.. ..-+-++++||| .+...-...+.++.++++.+.- ++.++.
T Consensus 191 h~---------------~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k~-------------lysl~a--------- 232 (315)
T KOG0279|consen 191 HS---------------GYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGKN-------------LYSLEA--------- 232 (315)
T ss_pred cc---------------ccEEEEEECCCC-CEEecCCCCceEEEEEccCCce-------------eEeccC---------
Confidence 11 134578999999 8888877888899998875432 233332
Q ss_pred ccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEE-EEeccCCCCCCCCcccccccCCCceEEE--ccCCcEEEEECCC
Q 001380 836 LQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVS-TLAGIGKAGFKDGAALAAQLSEPAGIIE--AQNGNLFIADTNN 912 (1089)
Q Consensus 836 l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~-t~~g~g~~g~~~g~~~~~~l~~P~gi~v--d~~G~lyVad~~n 912 (1089)
++.-.++++.|+.. +.+-.....|+.+|.+++.+- ++.-.+. | + ...-..|.++.. ..+|.-+++....
T Consensus 233 ~~~v~sl~fspnry-wL~~at~~sIkIwdl~~~~~v~~l~~d~~-g----~--s~~~~~~~clslaws~dG~tLf~g~td 304 (315)
T KOG0279|consen 233 FDIVNSLCFSPNRY-WLCAATATSIKIWDLESKAVVEELKLDGI-G----P--SSKAGDPICLSLAWSADGQTLFAGYTD 304 (315)
T ss_pred CCeEeeEEecCCce-eEeeccCCceEEEeccchhhhhhcccccc-c----c--ccccCCcEEEEEEEcCCCcEEEeeecC
Confidence 23456788988754 444444456999988776542 2221110 0 0 113344666544 5578655555556
Q ss_pred CEEEEEeC
Q 001380 913 NIIRYLDL 920 (1089)
Q Consensus 913 ~~I~~~~~ 920 (1089)
+.|+....
T Consensus 305 ~~irv~qv 312 (315)
T KOG0279|consen 305 NVIRVWQV 312 (315)
T ss_pred CcEEEEEe
Confidence 66666543
|
|
| >TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00013 Score=78.20 Aligned_cols=71 Identities=15% Similarity=0.173 Sum_probs=49.5
Q ss_pred cCCChHhHHHHHHHCCCCC---CCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEE
Q 001380 188 SSADRIKVDANLAAAGLPV---SMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCI 263 (1089)
Q Consensus 188 Sn~~~~~~~~~l~~~gl~~---~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i 263 (1089)
++...+.+...+++.++.. .++..|.. .+-.|...++.+++++|++++++++|||+.||+.|.+.+|...+
T Consensus 146 ~~~~~~~~~~~l~~~~~~~~~~~~~~ei~~-----~~~~Kg~al~~l~~~lgi~~~~vi~~GD~~NDi~ml~~ag~~va 219 (221)
T TIGR02463 146 SDSRMPRFTALLADLGLAIVQGNRFSHVLG-----ASSSKGKAANWLKATYNQPDVKTLGLGDGPNDLPLLEVADYAVV 219 (221)
T ss_pred chhHHHHHHHHHHHcCCeEEecCCeeEEec-----CCCCHHHHHHHHHHHhCCCCCcEEEECCCHHHHHHHHhCCceEE
Confidence 4444455566676655530 12222222 23345667899999999999999999999999999999996543
|
This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate. |
| >KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0003 Score=91.03 Aligned_cols=200 Identities=22% Similarity=0.340 Sum_probs=151.6
Q ss_pred CCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCE
Q 001380 601 KFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHA 680 (1089)
Q Consensus 601 ~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~ 680 (1089)
..+..+.++..++.+|.+|.....|.....++.....+-..| ...|.|+++|..++.+|++|.++..
T Consensus 437 ~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~~~g-------------~~~~~~lavD~~~~~~y~tDe~~~~ 503 (877)
T KOG1215|consen 437 KNAVALDFDVLNNRIYWADLSDEKICRASQDGSSECELCGDG-------------LCIPEGLAVDWIGDNIYWTDEGNCL 503 (877)
T ss_pred ccceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEeccC-------------ccccCcEEEEeccCCceecccCCce
Confidence 556666777778899999999999999988877665532221 3478999999988889999999999
Q ss_pred EEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC-CcEEEEEECCCCeEEEEeCCCcc
Q 001380 681 LREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG-QHQIWEHSTVDGVTRAFSGDGYE 759 (1089)
Q Consensus 681 I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~-~~~I~~~~~~~g~~~~~~g~g~~ 759 (1089)
|.+.++++....++.... +..|..++++|..+.+|+++++ ..+|.+-..++.....+..
T Consensus 504 i~v~~~~g~~~~vl~~~~----------------l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~---- 563 (877)
T KOG1215|consen 504 IEVADLDGSSRKVLVSKD----------------LDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLVT---- 563 (877)
T ss_pred eEEEEccCCceeEEEecC----------------CCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceEEEe----
Confidence 999998777655665322 3589999999999999999998 4456555544444444432
Q ss_pred ccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCC-eEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccC
Q 001380 760 RNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESS-SIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQH 838 (1089)
Q Consensus 760 ~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~-~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~ 838 (1089)
.+..+|+|++++...+.+|++|.... .|...+.++...+ +. ....+.|
T Consensus 564 ----------~~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~-~~--------------------~~~~~~~ 612 (877)
T KOG1215|consen 564 ----------NGILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNRR-VV--------------------DSEDLPH 612 (877)
T ss_pred ----------CCccCCCcceEEeecceeEEEcccCCcceeeeecCCCceE-Ee--------------------ccccCCC
Confidence 22568999999988889999999988 7888888755443 21 1123679
Q ss_pred ceEEEEccCCcEEEEeCCCCEEEEEeC
Q 001380 839 PLGVYCAKNGQIYVADSYNHKIKKLDP 865 (1089)
Q Consensus 839 P~gva~~~~G~lyVaD~~n~~I~~~d~ 865 (1089)
|.++++- .+++|+.|..++.+.+...
T Consensus 613 p~~~~~~-~~~iyw~d~~~~~~~~~~~ 638 (877)
T KOG1215|consen 613 PFGLSVF-EDYIYWTDWSNRAISRAEK 638 (877)
T ss_pred ceEEEEe-cceeEEeeccccceEeeec
Confidence 9999986 5699999999887666554
|
|
| >PF13728 TraF: F plasmid transfer operon protein | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.3e-05 Score=82.51 Aligned_cols=96 Identities=27% Similarity=0.360 Sum_probs=74.9
Q ss_pred cccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCc-cceeecCChhH
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGIS-HPVVNDGDMNL 527 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~d~~~~l 527 (1089)
..+.+++-|+.|+.+.|+.|..+.|.|+.+.++| |+.|+.||++.. +++ ||... .+..+
T Consensus 116 ~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~----------------~~~~fp~~~-~~~g~ 175 (215)
T PF13728_consen 116 KQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY---GFSVIPVSLDGR----------------PIPSFPNPR-PDPGQ 175 (215)
T ss_pred HHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh---CCEEEEEecCCC----------------CCcCCCCCC-CCHHH
Confidence 5667889999999999999999999999999997 689999987311 111 22221 25679
Q ss_pred HHHhCCCceeEEEEECCCC-cEEEEecCCCchhhHHHH
Q 001380 528 WRELGVNSWPTFAVVGPNG-KLLAQLAGEGHRKDLDDL 564 (1089)
Q Consensus 528 ~~~~~v~~~Pt~~lid~~G-~i~~~~~G~~~~~~l~~~ 564 (1089)
++.+||..+|++||+++++ ++.-...|..+.++|.+-
T Consensus 176 ~~~l~v~~~Pal~Lv~~~~~~~~pv~~G~~s~~~L~~r 213 (215)
T PF13728_consen 176 AKRLGVKVTPALFLVNPNTKKWYPVSQGFMSLDELEDR 213 (215)
T ss_pred HHHcCCCcCCEEEEEECCCCeEEEEeeecCCHHHHHHh
Confidence 9999999999999999988 444457788887777553
|
|
| >smart00594 UAS UAS domain | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.8e-05 Score=74.54 Aligned_cols=90 Identities=13% Similarity=0.164 Sum_probs=65.6
Q ss_pred ccCCCEEEEEEecCCCcchhhhhhhHH---HHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChh
Q 001380 450 DLKGKVVVLDFWTYCCINCMHVLPDLE---FLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMN 526 (1089)
Q Consensus 450 ~~~gk~vll~Fwa~wC~~C~~~~p~l~---~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~ 526 (1089)
.-.+|.++|+|++.||++|.......- ++.+.+. +.+.++.+.+. . ....+
T Consensus 24 k~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~-~~fv~~~~dv~---~----------------------~eg~~ 77 (122)
T smart00594 24 SRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIR-ENFIFWQVDVD---T----------------------SEGQR 77 (122)
T ss_pred HhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHH-cCEEEEEecCC---C----------------------hhHHH
Confidence 346899999999999999998755431 2333332 35777777431 1 12357
Q ss_pred HHHHhCCCceeEEEEECCCC-----cEEEEecCCCchhhHHHHH
Q 001380 527 LWRELGVNSWPTFAVVGPNG-----KLLAQLAGEGHRKDLDDLV 565 (1089)
Q Consensus 527 l~~~~~v~~~Pt~~lid~~G-----~i~~~~~G~~~~~~l~~~l 565 (1089)
+++.|++.++|+++++|++| .++.+..|..+.+++...+
T Consensus 78 l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 78 VSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred HHHhcCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 88899999999999999998 4677788988888776654
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0036 Score=73.95 Aligned_cols=188 Identities=17% Similarity=0.205 Sum_probs=114.5
Q ss_pred CCEEEEEECC---CCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC--CcEEEE
Q 001380 668 KNLLYVADTE---NHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG--QHQIWE 742 (1089)
Q Consensus 668 g~~lyVaD~~---n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~--~~~I~~ 742 (1089)
+..+|+.... ...|+..|.+++..+.+...+. .-...+++|+|+.|+++... .++|+.
T Consensus 156 ~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~-----------------~~~~p~~Spdg~~la~~~~~~~~~~i~v 218 (417)
T TIGR02800 156 TRIAYVSKSGKSRRYELQVADYDGANPQTITRSRE-----------------PILSPAWSPDGQKLAYVSFESGKPEIYV 218 (417)
T ss_pred CEEEEEEEeCCCCcceEEEEcCCCCCCEEeecCCC-----------------ceecccCCCCCCEEEEEEcCCCCcEEEE
Confidence 3456666542 3467777776666666543221 12345689999888877644 368999
Q ss_pred EECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCC--CCeEEEEEcCCCCeEEEecCCCCCCCC
Q 001380 743 HSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSE--SSSIRALNLKTGGSRLLAGGDPIFPDN 820 (1089)
Q Consensus 743 ~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~--~~~I~~~~~~~~~~~~~~g~~~~~~~~ 820 (1089)
++..++....+.... .....+++++||+.|+++... +..|+.++..++....+....
T Consensus 219 ~d~~~g~~~~~~~~~---------------~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~------ 277 (417)
T TIGR02800 219 QDLATGQREKVASFP---------------GMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGP------ 277 (417)
T ss_pred EECCCCCEEEeecCC---------------CCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCC------
Confidence 999888666554211 012347899999888876543 346899998876655442210
Q ss_pred ccccCCCCCccccccccCceEEEEccCCc-EE-EEeC-CCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceE
Q 001380 821 LFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IY-VADS-YNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGI 897 (1089)
Q Consensus 821 l~~~g~~dg~~~~~~l~~P~gva~~~~G~-ly-VaD~-~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi 897 (1089)
+ .....+++++|+ |+ +++. +...|+.+|..++....+...+ .....+
T Consensus 278 --------~--------~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~--------------~~~~~~ 327 (417)
T TIGR02800 278 --------G--------IDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRG--------------GYNASP 327 (417)
T ss_pred --------C--------CCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC--------------CCccCe
Confidence 0 011235677885 54 3443 3448999998887776665321 123456
Q ss_pred EEccCCc-EEEEECCC--CEEEEEeCCCC
Q 001380 898 IEAQNGN-LFIADTNN--NIIRYLDLNKE 923 (1089)
Q Consensus 898 ~vd~~G~-lyVad~~n--~~I~~~~~~~~ 923 (1089)
++.++|+ |+++...+ .+|..+++.+.
T Consensus 328 ~~spdg~~i~~~~~~~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 328 SWSPDGDLIAFVHREGGGFNIAVMDLDGG 356 (417)
T ss_pred EECCCCCEEEEEEccCCceEEEEEeCCCC
Confidence 7788776 55554432 47888888775
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1 | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00012 Score=76.10 Aligned_cols=140 Identities=21% Similarity=0.303 Sum_probs=98.2
Q ss_pred ccCCCCCCCCCCccccCCCCCce-eeccccc-C-CCEEEEEEecCCCcchhhhhhhHHHHHHHcCCC-CEEEEEEeC---
Q 001380 422 ENRKTTPIVPEFPAKLDWLNTAP-LQFRRDL-K-GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDM-PFTVVGVHS--- 494 (1089)
Q Consensus 422 ~~~~~g~~~P~f~~~~~~~~g~~-~~l~~~~-~-gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~-~v~vi~v~~--- 494 (1089)
.....|.+||+.+. ..++|+. .++ -|+ + ++|+||+|-+-.||+=+.-++.++++.++|++. ++.+|.|-=
T Consensus 71 ~~a~~G~~APns~v--v~l~g~~~~~i-ldf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHp 147 (237)
T PF00837_consen 71 KEAKLGGPAPNSPV--VTLDGQRSCRI-LDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHP 147 (237)
T ss_pred cceeCCCCCCCCce--EeeCCCcceeH-HHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCc
Confidence 36789999999995 4568887 777 666 3 589999999988999999999999999999984 676666521
Q ss_pred -------------CCCCChhcHHHHHHHHHHcCCccceeecC-ChhHHHHhCCCceeE-EEEECCCCcEEEE-ecCCC--
Q 001380 495 -------------AKFDNEKDLEAIRNAVLRYGISHPVVNDG-DMNLWRELGVNSWPT-FAVVGPNGKLLAQ-LAGEG-- 556 (1089)
Q Consensus 495 -------------~~~~~~~~~~~~~~~~~~~~~~~~v~~d~-~~~l~~~~~v~~~Pt-~~lid~~G~i~~~-~~G~~-- 556 (1089)
.+-..-+++-.+.+.+.++....|++.|. ++...+.||. +|. +||| .+|+|+++ -.|+.
T Consensus 148 sDgW~~~~~~~~i~qh~sledR~~aA~~l~~~~~~~pi~vD~mdN~~~~~YgA--~PeRlyIi-~~gkv~Y~Gg~GP~~y 224 (237)
T PF00837_consen 148 SDGWAFGNNPYEIPQHRSLEDRLRAAKLLKEEFPQCPIVVDTMDNNFNKAYGA--LPERLYII-QDGKVVYKGGPGPFGY 224 (237)
T ss_pred CCCccCCCCceeecCCCCHHHHHHHHHHHHhhCCCCCEEEEccCCHHHHHhCC--CcceEEEE-ECCEEEEeCCCCCCcC
Confidence 11111123333344444444678887775 7788899986 454 4555 69999988 34443
Q ss_pred chhhHHHHHHH
Q 001380 557 HRKDLDDLVEA 567 (1089)
Q Consensus 557 ~~~~l~~~l~~ 567 (1089)
+.++++++|++
T Consensus 225 ~~~e~r~~L~~ 235 (237)
T PF00837_consen 225 SPEELREWLEK 235 (237)
T ss_pred CHHHHHHHHHh
Confidence 45666666553
|
97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0033 Score=73.74 Aligned_cols=198 Identities=13% Similarity=0.060 Sum_probs=122.5
Q ss_pred EEEeecCCe-EEEEeCC--CCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC--CCCE
Q 001380 606 LAIDILNNR-LFISDSN--HNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT--ENHA 680 (1089)
Q Consensus 606 vavd~~~g~-L~vsd~~--~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~--~n~~ 680 (1089)
..++|++++ +|++... ...|++++..+...+.+... . | ......++|+|+.|+++-. ++..
T Consensus 193 p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~-~-g------------~~~~~~~SPDG~~la~~~~~~g~~~ 258 (419)
T PRK04043 193 PKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS-Q-G------------MLVVSDVSKDGSKLLLTMAPKGQPD 258 (419)
T ss_pred EEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC-C-C------------cEEeeEECCCCCEEEEEEccCCCcE
Confidence 456775554 6654433 56899999875554444322 1 0 1123457889976766533 4578
Q ss_pred EEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC--CCcEEEEEECCCCeEEEEeCCCc
Q 001380 681 LREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA--GQHQIWEHSTVDGVTRAFSGDGY 758 (1089)
Q Consensus 681 I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~--~~~~I~~~~~~~g~~~~~~g~g~ 758 (1089)
|+.++++++..+.+.... +.+ ..-.|+|+|+.||++.. +..+|+.+|..+|..+.+.-.|
T Consensus 259 Iy~~dl~~g~~~~LT~~~--~~d---------------~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g- 320 (419)
T PRK04043 259 IYLYDTNTKTLTQITNYP--GID---------------VNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG- 320 (419)
T ss_pred EEEEECCCCcEEEcccCC--Ccc---------------CccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC-
Confidence 999999888877764211 000 12259999988888753 3558999999988876554211
Q ss_pred cccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCC--------CeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCc
Q 001380 759 ERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSES--------SSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGM 830 (1089)
Q Consensus 759 ~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~--------~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~ 830 (1089)
. .. .+++|||+.|.++.... ..|+.++++++..+.+..+ + .
T Consensus 321 -----------~--~~---~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-----------~-~--- 369 (419)
T PRK04043 321 -----------K--NN---SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN-----------G-V--- 369 (419)
T ss_pred -----------C--cC---ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC-----------C-C---
Confidence 0 11 27899998776655432 4789999888776655321 0 0
Q ss_pred cccccccCceEEEEccCCc-EEEE-eCC-CCEEEEEeCCCCeEEEEe
Q 001380 831 GSEVLLQHPLGVYCAKNGQ-IYVA-DSY-NHKIKKLDPASNRVSTLA 874 (1089)
Q Consensus 831 ~~~~~l~~P~gva~~~~G~-lyVa-D~~-n~~I~~~d~~~~~v~t~~ 874 (1089)
.. ...++|||+ |+++ +.. ...|..++.+++....+.
T Consensus 370 -----~~---~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~ 408 (419)
T PRK04043 370 -----NQ---FPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFP 408 (419)
T ss_pred -----cC---CeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEee
Confidence 01 146789995 5444 333 335888898877666664
|
|
| >TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.5e-05 Score=81.57 Aligned_cols=104 Identities=18% Similarity=0.256 Sum_probs=82.6
Q ss_pred cccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCc-cceeecCChhH
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGIS-HPVVNDGDMNL 527 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~d~~~~l 527 (1089)
..+..++-|+.||.+-|+.|.++.|.|+.+.++| |+.++.||++.. +++ ||... .+..+
T Consensus 146 ~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG~----------------~~p~fp~~~-~d~gq 205 (256)
T TIGR02739 146 QQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY---GISVIPISVDGT----------------LIPGLPNSR-SDSGQ 205 (256)
T ss_pred HHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCC----------------CCCCCCCcc-CChHH
Confidence 5667789999999999999999999999999997 599999987421 111 33221 25678
Q ss_pred HHHhCCCceeEEEEECCCC-cEEEEecCCCchhhHHHHHHHHHHHh
Q 001380 528 WRELGVNSWPTFAVVGPNG-KLLAQLAGEGHRKDLDDLVEAALLFY 572 (1089)
Q Consensus 528 ~~~~~v~~~Pt~~lid~~G-~i~~~~~G~~~~~~l~~~l~~~l~~~ 572 (1089)
++.+||..+|++||++++. ++.-...|..+.++|.+-|..++..+
T Consensus 206 a~~l~v~~~Pal~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~~~f 251 (256)
T TIGR02739 206 AQHLGVKYFPALYLVNPKSQKMSPLAYGFISQDELKERILNVLTQF 251 (256)
T ss_pred HHhcCCccCceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHHhcc
Confidence 9999999999999999994 44445789999999988888777665
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se. |
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.015 Score=69.49 Aligned_cols=198 Identities=15% Similarity=0.135 Sum_probs=121.0
Q ss_pred CcceeEEee-CCCEEEEEECCCCEEEEEECCCCe--------EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCC
Q 001380 658 RPQGLAYNA-KKNLLYVADTENHALREIDFVNDT--------VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINE 728 (1089)
Q Consensus 658 ~P~gla~d~-~g~~lyVaD~~n~~I~~~d~~~g~--------v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~ 728 (1089)
...+++++| +++ ++++-..++.|+.+|..++. +.++.+. -.....|+|+|.++
T Consensus 77 ~V~~v~fsP~d~~-~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH-----------------~~~V~~l~f~P~~~ 138 (493)
T PTZ00421 77 PIIDVAFNPFDPQ-KLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGH-----------------TKKVGIVSFHPSAM 138 (493)
T ss_pred CEEEEEEcCCCCC-EEEEEeCCCEEEEEecCCCccccccCcceEEecCC-----------------CCcEEEEEeCcCCC
Confidence 457899998 677 55665678899999976542 1222211 12457899999876
Q ss_pred EEEEEECCCcEEEEEECCCCeEE-EEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCe
Q 001380 729 KVYIAMAGQHQIWEHSTVDGVTR-AFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGS 807 (1089)
Q Consensus 729 ~lyvad~~~~~I~~~~~~~g~~~-~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~ 807 (1089)
.++++....+.|..||..++... .+.+. -....+|+++++| .++++-+..+.|+.+++.++..
T Consensus 139 ~iLaSgs~DgtVrIWDl~tg~~~~~l~~h---------------~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~ 202 (493)
T PTZ00421 139 NVLASAGADMVVNVWDVERGKAVEVIKCH---------------SDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTI 202 (493)
T ss_pred CEEEEEeCCCEEEEEECCCCeEEEEEcCC---------------CCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcE
Confidence 67777667889999998877543 23211 1235689999998 6777777889999999986654
Q ss_pred E-EEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEe----CCCCEEEEEeCCCCe--EEEEeccCCCC
Q 001380 808 R-LLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVAD----SYNHKIKKLDPASNR--VSTLAGIGKAG 880 (1089)
Q Consensus 808 ~-~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD----~~n~~I~~~d~~~~~--v~t~~g~g~~g 880 (1089)
. .+.+.. .. ....+.+.+++..+++- ...+.|+.+|..+.. +.+....
T Consensus 203 v~tl~~H~-------------~~--------~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d---- 257 (493)
T PTZ00421 203 VSSVEAHA-------------SA--------KSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLD---- 257 (493)
T ss_pred EEEEecCC-------------CC--------cceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccC----
Confidence 2 221110 00 11234455555444432 235789999875322 2222110
Q ss_pred CCCCcccccccCCCceEEEccCCc-EEEEECCCCEEEEEeCCCC
Q 001380 881 FKDGAALAAQLSEPAGIIEAQNGN-LFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 881 ~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~~n~~I~~~~~~~~ 923 (1089)
.-....-..++++++ ||++..+.+.|+.+++..+
T Consensus 258 ---------~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 258 ---------QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred ---------CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 000111234677776 5666667899999999876
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.011 Score=63.16 Aligned_cols=205 Identities=19% Similarity=0.227 Sum_probs=133.6
Q ss_pred CcceeEEeeCCCEEEEEECCCCEEEEEECCCCe-EEEEecCCCCCCCCCCCCcccccccCCceeEEE-ecCCCEEEEEEC
Q 001380 658 RPQGLAYNAKKNLLYVADTENHALREIDFVNDT-VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCY-KPINEKVYIAMA 735 (1089)
Q Consensus 658 ~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~-v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~-~~~g~~lyvad~ 735 (1089)
.+..|.++.+|. ..++-+.+..|+.+|..+|. +.++... ..| +.-+.+ ++....++-+..
T Consensus 16 ~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~ti~sk-kyG----------------~~~~~Fth~~~~~i~sStk 77 (311)
T KOG1446|consen 16 KINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKTINSK-KYG----------------VDLACFTHHSNTVIHSSTK 77 (311)
T ss_pred ceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeEeecc-ccc----------------ccEEEEecCCceEEEccCC
Confidence 578999999999 45555667899999987765 5555532 111 222333 233334444444
Q ss_pred CCcEEEEEECCCCe-EEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCC
Q 001380 736 GQHQIWEHSTVDGV-TRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGD 814 (1089)
Q Consensus 736 ~~~~I~~~~~~~g~-~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~ 814 (1089)
.+..|+-++..+.. ++.|.|.. ..-+.|+++|-+ ..|++-+...+||.+|+....-..+
T Consensus 78 ~d~tIryLsl~dNkylRYF~GH~---------------~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~---- 137 (311)
T KOG1446|consen 78 EDDTIRYLSLHDNKYLRYFPGHK---------------KRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGL---- 137 (311)
T ss_pred CCCceEEEEeecCceEEEcCCCC---------------ceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceE----
Confidence 56778888877654 55666543 245689999987 9999999999999999873222111
Q ss_pred CCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCC---CCeEEEEeccCCCCCCCCccccccc
Q 001380 815 PIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPA---SNRVSTLAGIGKAGFKDGAALAAQL 891 (1089)
Q Consensus 815 ~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~---~~~v~t~~g~g~~g~~~g~~~~~~l 891 (1089)
..++.+--.|+||+|.++.+-..+..|+.+|.. .|--+++.-. ....
T Consensus 138 -------------------l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~-----------~~~~ 187 (311)
T KOG1446|consen 138 -------------------LNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSIT-----------DNDE 187 (311)
T ss_pred -------------------EecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccC-----------CCCc
Confidence 113455567999999999988888899999863 2222333211 1234
Q ss_pred CCCceEEEccCCcEEEEECCCCEEEEEeCCCCCceEEEEe
Q 001380 892 SEPAGIIEAQNGNLFIADTNNNIIRYLDLNKEEPELQTLE 931 (1089)
Q Consensus 892 ~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~~~~~~~l~ 931 (1089)
.+=..|.+.++|...+..++++.+..++--.++ .+.++.
T Consensus 188 ~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~-~~~tfs 226 (311)
T KOG1446|consen 188 AEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT-VKSTFS 226 (311)
T ss_pred cceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc-EeeeEe
Confidence 556789999999866666677878888766552 334444
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.01 Score=76.24 Aligned_cols=243 Identities=10% Similarity=0.113 Sum_probs=146.6
Q ss_pred CceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeC-CCEEEEEECCCCEE
Q 001380 603 PGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAK-KNLLYVADTENHAL 681 (1089)
Q Consensus 603 P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~-g~~lyVaD~~n~~I 681 (1089)
-..+++++ +|.++++-...+.|.+|+............ .... .-..-....++++++. ++ ..++-..++.|
T Consensus 486 V~~i~fs~-dg~~latgg~D~~I~iwd~~~~~~~~~~~~-~~~~-----~~~~~~~v~~l~~~~~~~~-~las~~~Dg~v 557 (793)
T PLN00181 486 VCAIGFDR-DGEFFATAGVNKKIKIFECESIIKDGRDIH-YPVV-----ELASRSKLSGICWNSYIKS-QVASSNFEGVV 557 (793)
T ss_pred EEEEEECC-CCCEEEEEeCCCEEEEEECCcccccccccc-cceE-----EecccCceeeEEeccCCCC-EEEEEeCCCeE
Confidence 44678887 677777777788999998643210000000 0000 0000113467788764 45 44555568899
Q ss_pred EEEECCCCeE-EEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEE-EEeCCCcc
Q 001380 682 REIDFVNDTV-RTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTR-AFSGDGYE 759 (1089)
Q Consensus 682 ~~~d~~~g~v-~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~-~~~g~g~~ 759 (1089)
+.+|..++.. .++.+.. ..-+++++++.++.++++....+.|..||...+... .+...
T Consensus 558 ~lWd~~~~~~~~~~~~H~-----------------~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~--- 617 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHE-----------------KRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK--- 617 (793)
T ss_pred EEEECCCCeEEEEecCCC-----------------CCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC---
Confidence 9999887653 3333211 246889999755577777777889999998766443 22210
Q ss_pred ccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCe--EEEecCCCCCCCCccccCCCCCcccccccc
Q 001380 760 RNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGS--RLLAGGDPIFPDNLFKFGDRDGMGSEVLLQ 837 (1089)
Q Consensus 760 ~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~--~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~ 837 (1089)
.....+.+.+..+.++++-+..+.|+.++...+.. ..+.+ +. .
T Consensus 618 -------------~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~-------------h~---------~ 662 (793)
T PLN00181 618 -------------ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG-------------HS---------K 662 (793)
T ss_pred -------------CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecC-------------CC---------C
Confidence 12345666443336667777889999999865432 12211 11 0
Q ss_pred CceEEEEccCCcEEEEeCCCCEEEEEeCCCC-------eEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEEC
Q 001380 838 HPLGVYCAKNGQIYVADSYNHKIKKLDPASN-------RVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADT 910 (1089)
Q Consensus 838 ~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~-------~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~ 910 (1089)
.-..+.+. ++..+++-+..+.|+.+|...+ .+.++.+ .-+....++++++|.++++..
T Consensus 663 ~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g--------------h~~~i~~v~~s~~~~~lasgs 727 (793)
T PLN00181 663 TVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMG--------------HTNVKNFVGLSVSDGYIATGS 727 (793)
T ss_pred CEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcC--------------CCCCeeEEEEcCCCCEEEEEe
Confidence 12355664 5667777777889999987532 2334432 123356688888888888888
Q ss_pred CCCEEEEEeCCCC
Q 001380 911 NNNIIRYLDLNKE 923 (1089)
Q Consensus 911 ~n~~I~~~~~~~~ 923 (1089)
.++.|.+++....
T Consensus 728 ~D~~v~iw~~~~~ 740 (793)
T PLN00181 728 ETNEVFVYHKAFP 740 (793)
T ss_pred CCCEEEEEECCCC
Confidence 8999999987654
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0095 Score=76.56 Aligned_cols=252 Identities=10% Similarity=0.086 Sum_probs=146.1
Q ss_pred CceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEee-CCCEEEEEECCCCE
Q 001380 603 PGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNA-KKNLLYVADTENHA 680 (1089)
Q Consensus 603 P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~-~g~~lyVaD~~n~~ 680 (1089)
...+++++..+.++++-...+.|.+||.. ++.+..+.+. . ..-.++++++ +++ ++++-..++.
T Consensus 535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H-~-------------~~V~~l~~~p~~~~-~L~Sgs~Dg~ 599 (793)
T PLN00181 535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEH-E-------------KRVWSIDYSSADPT-LLASGSDDGS 599 (793)
T ss_pred eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCC-C-------------CCEEEEEEcCCCCC-EEEEEcCCCE
Confidence 34567776556666666678899999976 5555555332 1 1347889986 566 6666667889
Q ss_pred EEEEECCCCeE-EEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCe--EEEEeCCC
Q 001380 681 LREIDFVNDTV-RTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGV--TRAFSGDG 757 (1089)
Q Consensus 681 I~~~d~~~g~v-~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~--~~~~~g~g 757 (1089)
|+.+|..++.. .++.. . .....+.+.+..+.++++...++.|..||...+. +..+.+..
T Consensus 600 v~iWd~~~~~~~~~~~~-~-----------------~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~ 661 (793)
T PLN00181 600 VKLWSINQGVSIGTIKT-K-----------------ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHS 661 (793)
T ss_pred EEEEECCCCcEEEEEec-C-----------------CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCC
Confidence 99999876543 33321 0 1345677755444666666778899999987543 22332211
Q ss_pred ccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCcccccccc
Q 001380 758 YERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQ 837 (1089)
Q Consensus 758 ~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~ 837 (1089)
..-+.+.+. ++ ..+++-+..+.|+.++...+... . ....+..+... -.
T Consensus 662 ---------------~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~-~------~~~~l~~~~gh--------~~ 709 (793)
T PLN00181 662 ---------------KTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISG-I------NETPLHSFMGH--------TN 709 (793)
T ss_pred ---------------CCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCccc-c------CCcceEEEcCC--------CC
Confidence 123456665 44 44556667788999987632100 0 00001111100 12
Q ss_pred CceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEE-EEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEE
Q 001380 838 HPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVS-TLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIR 916 (1089)
Q Consensus 838 ~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~-t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~ 916 (1089)
....++++++|.++++.+..+.|+.++....... ++. ....+...+......-..-..++.+++|+.+++-..++.|+
T Consensus 710 ~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~-~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~ 788 (793)
T PLN00181 710 VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYK-FKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIK 788 (793)
T ss_pred CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEe-cccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEE
Confidence 2456788888988888888999999987544221 111 11000000000000011235677888888888888888888
Q ss_pred EEeC
Q 001380 917 YLDL 920 (1089)
Q Consensus 917 ~~~~ 920 (1089)
++++
T Consensus 789 i~~~ 792 (793)
T PLN00181 789 ILEM 792 (793)
T ss_pred EEec
Confidence 8764
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0092 Score=61.58 Aligned_cols=245 Identities=13% Similarity=0.122 Sum_probs=154.3
Q ss_pred CCceEEEeecCCeEEEEeCCCCEEEEEeCC-C--CEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCC
Q 001380 602 FPGKLAIDILNNRLFISDSNHNRIVVTDLD-G--NFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTEN 678 (1089)
Q Consensus 602 ~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g--~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n 678 (1089)
+...+.+.|..+.|.++ ++..|..+|.+ + +.+.++.+. -.+...+.|..+|+.+|- ..+.
T Consensus 42 qVNrLeiTpdk~~LAaa--~~qhvRlyD~~S~np~Pv~t~e~h--------------~kNVtaVgF~~dgrWMyT-gseD 104 (311)
T KOG0315|consen 42 QVNRLEITPDKKDLAAA--GNQHVRLYDLNSNNPNPVATFEGH--------------TKNVTAVGFQCDGRWMYT-GSED 104 (311)
T ss_pred ceeeEEEcCCcchhhhc--cCCeeEEEEccCCCCCceeEEecc--------------CCceEEEEEeecCeEEEe-cCCC
Confidence 34567777744444333 34456666654 2 245555544 135678889889986554 4578
Q ss_pred CEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCc-eeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCC
Q 001380 679 HALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSP-WDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDG 757 (1089)
Q Consensus 679 ~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P-~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g 757 (1089)
+.++.+|+..-...+... .++| ..|+++|....|++.|. ++.|+.||+.+..+....-.
T Consensus 105 gt~kIWdlR~~~~qR~~~------------------~~spVn~vvlhpnQteLis~dq-sg~irvWDl~~~~c~~~liP- 164 (311)
T KOG0315|consen 105 GTVKIWDLRSLSCQRNYQ------------------HNSPVNTVVLHPNQTELISGDQ-SGNIRVWDLGENSCTHELIP- 164 (311)
T ss_pred ceEEEEeccCcccchhcc------------------CCCCcceEEecCCcceEEeecC-CCcEEEEEccCCccccccCC-
Confidence 899999987633333221 2233 67999999888888875 67899999876644332210
Q ss_pred ccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCcccccccc
Q 001380 758 YERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQ 837 (1089)
Q Consensus 758 ~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~ 837 (1089)
.....-..|++.+|| .+.++-...++.+++++-++..... ..| +-.| ++.-.
T Consensus 165 ------------e~~~~i~sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~~s~-----l~P--~~k~--------~ah~~ 216 (311)
T KOG0315|consen 165 ------------EDDTSIQSLTVMPDG-SMLAAANNKGNCYVWRLLNHQTASE-----LEP--VHKF--------QAHNG 216 (311)
T ss_pred ------------CCCcceeeEEEcCCC-cEEEEecCCccEEEEEccCCCcccc-----ceE--hhhe--------ecccc
Confidence 001124579999999 6666766778888888765332111 111 1111 11223
Q ss_pred CceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEE
Q 001380 838 HPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRY 917 (1089)
Q Consensus 838 ~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~ 917 (1089)
|-+-.-++||++..++-+..+.++.++.++-......-.| .-..-.+-++..+|+-+|+-...+..+.
T Consensus 217 ~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~g------------h~rWvWdc~FS~dg~YlvTassd~~~rl 284 (311)
T KOG0315|consen 217 HILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTG------------HQRWVWDCAFSADGEYLVTASSDHTARL 284 (311)
T ss_pred eEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeec------------CCceEEeeeeccCccEEEecCCCCceee
Confidence 4556677899998888888999999987765222222111 2245667888889998888888899999
Q ss_pred EeCCCC
Q 001380 918 LDLNKE 923 (1089)
Q Consensus 918 ~~~~~~ 923 (1089)
.++..+
T Consensus 285 W~~~~~ 290 (311)
T KOG0315|consen 285 WDLSAG 290 (311)
T ss_pred cccccC
Confidence 999877
|
|
| >TIGR01675 plant-AP plant acid phosphatase | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00015 Score=76.27 Aligned_cols=96 Identities=16% Similarity=0.114 Sum_probs=66.0
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHh---HHHHHHHCCCCCCCccEEEEcCCccCCCC----CHHHHHHHHHHcC
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIK---VDANLAAAGLPVSMFDAIVSADAFENLKP----APDIFLSASKILN 236 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~---~~~~l~~~gl~~~~fd~i~~~~~~~~~KP----~~~~~~~~l~~lg 236 (1089)
.+..|++.++++.|+++|++++++|+..... +...|.++|++ .+ +.++-.......|. |.+...++. +-|
T Consensus 119 apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~-~~-~~LiLR~~~d~~~~~~~yKs~~R~~l~-~~G 195 (229)
T TIGR01675 119 APALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFT-GW-KHLILRGLEDSNKTVVTYKSEVRKSLM-EEG 195 (229)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCC-Cc-CeeeecCCCCCCchHhHHHHHHHHHHH-hCC
Confidence 3789999999999999999999999987655 77888999986 44 66665542222332 223333333 223
Q ss_pred CCCCcEEEEcCChhhHHHHHHcCCeEEEE
Q 001380 237 VPTSECIVIEDALAGVQAAKAAQMRCIAV 265 (1089)
Q Consensus 237 v~p~~~v~VGD~~~Di~aA~~aG~~~i~V 265 (1089)
. .=+..|||.++|+.++ .+|.+++-.
T Consensus 196 Y--rIv~~iGDq~sDl~G~-~~~~RtFKL 221 (229)
T TIGR01675 196 Y--RIWGNIGDQWSDLLGS-PPGRRTFKL 221 (229)
T ss_pred c--eEEEEECCChHHhcCC-CccCceeeC
Confidence 2 3378899999999664 556555544
|
This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases. |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.003 Score=74.85 Aligned_cols=197 Identities=14% Similarity=0.158 Sum_probs=117.6
Q ss_pred ceEEEeecCCeEEEEeC--CCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEE--CCCC
Q 001380 604 GKLAIDILNNRLFISDS--NHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVAD--TENH 679 (1089)
Q Consensus 604 ~~vavd~~~g~L~vsd~--~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD--~~n~ 679 (1089)
..++++|++.+|+++.. +...|++++..+.....+... . | .-..++++|+|+.|+++- .++.
T Consensus 207 ~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~-~-----g--------~~~~~~wSPDG~~La~~~~~~g~~ 272 (429)
T PRK01742 207 MSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF-R-----G--------HNGAPAFSPDGSRLAFASSKDGVL 272 (429)
T ss_pred ccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC-C-----C--------ccCceeECCCCCEEEEEEecCCcE
Confidence 34677876666655432 345788888874433233221 0 0 112578999998777753 2344
Q ss_pred EEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC--CCcEEEEEECCCCeEEEEeCCC
Q 001380 680 ALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA--GQHQIWEHSTVDGVTRAFSGDG 757 (1089)
Q Consensus 680 ~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~--~~~~I~~~~~~~g~~~~~~g~g 757 (1089)
.|+.+|.+++.++.+.... ......+|+|+|..|+++.. +.-+||.++..++....+...
T Consensus 273 ~Iy~~d~~~~~~~~lt~~~-----------------~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~- 334 (429)
T PRK01742 273 NIYVMGANGGTPSQLTSGA-----------------GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGR- 334 (429)
T ss_pred EEEEEECCCCCeEeeccCC-----------------CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCC-
Confidence 6888998888877775311 12346789999987776643 456899988877665544210
Q ss_pred ccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCcccccccc
Q 001380 758 YERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQ 837 (1089)
Q Consensus 758 ~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~ 837 (1089)
. ..++++|+|+.|+++.. ..|.++++.++....+.... .
T Consensus 335 -------------~----~~~~~SpDG~~ia~~~~--~~i~~~Dl~~g~~~~lt~~~------------~---------- 373 (429)
T PRK01742 335 -------------G----YSAQISADGKTLVMING--DNVVKQDLTSGSTEVLSSTF------------L---------- 373 (429)
T ss_pred -------------C----CCccCCCCCCEEEEEcC--CCEEEEECCCCCeEEecCCC------------C----------
Confidence 0 13567899988877754 56777888877655442110 0
Q ss_pred CceEEEEccCCcEEE-EeC-CCCE-EEEEeCCCCeEEEEe
Q 001380 838 HPLGVYCAKNGQIYV-ADS-YNHK-IKKLDPASNRVSTLA 874 (1089)
Q Consensus 838 ~P~gva~~~~G~lyV-aD~-~n~~-I~~~d~~~~~v~t~~ 874 (1089)
-..+.++|+|+..+ +.. +... +..++.+++.+.++.
T Consensus 374 -~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 374 -DESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred -CCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc
Confidence 02356889996443 332 2222 334466676667774
|
|
| >PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3 | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00016 Score=83.93 Aligned_cols=103 Identities=17% Similarity=0.179 Sum_probs=72.0
Q ss_pred CccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHC-CC-------CCCCccEEEEcCC-----------------ccCC
Q 001380 167 FPGALELINQCKSKGLKVAVASSADRIKVDANLAAA-GL-------PVSMFDAIVSADA-----------------FENL 221 (1089)
Q Consensus 167 ~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~-gl-------~~~~fd~i~~~~~-----------------~~~~ 221 (1089)
-|.+..+|+.||++|.+++++||..-..+...+..+ |- +.++||.|++... .+..
T Consensus 185 ~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv~A~KP~FF~~~~pfr~vd~~~g~l 264 (448)
T PF05761_consen 185 DPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFDVVIVDARKPGFFTEGRPFREVDTETGKL 264 (448)
T ss_dssp -CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCECEEEES--CCHHHCT---EEEEETTTSSE
T ss_pred CchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhheeEEEEcCCCCcccCCCCceEEEECCCCcc
Confidence 578999999999999999999999989998888865 32 2589999987631 0110
Q ss_pred CCC-------------HHHHHHHHHHcCCCCCcEEEEcCCh-hhHHHHHHc-CCeEEEEcCCC
Q 001380 222 KPA-------------PDIFLSASKILNVPTSECIVIEDAL-AGVQAAKAA-QMRCIAVTTTL 269 (1089)
Q Consensus 222 KP~-------------~~~~~~~l~~lgv~p~~~v~VGD~~-~Di~aA~~a-G~~~i~V~~g~ 269 (1089)
+.. ..-.....+.+|...+++++|||.. .||...+.. ||+|++|..-.
T Consensus 265 ~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~g~~VLY~GDhi~~Di~~~k~~~gWrT~~Ii~EL 327 (448)
T PF05761_consen 265 KWGKYVGPLEKGKVYSGGNWDQLHKLLGWRGKEVLYFGDHIYGDILKSKKRHGWRTAAIIPEL 327 (448)
T ss_dssp ECS---SS--TC-EEEE--HHHHHHHCT--GGGEEEEESSTTTTHHHHHHHH-SEEEEE-TTH
T ss_pred ccccccccccCCCEeecCCHHHHHHHHccCCCeEEEECCchhhhhhhhccccceEEEEEehhh
Confidence 111 1115667778899889999999999 999888877 99999997643
|
1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A .... |
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0023 Score=76.38 Aligned_cols=195 Identities=17% Similarity=0.299 Sum_probs=135.9
Q ss_pred ceeEEeeCCCEEEEEECCCCEEEEEECCCCe---EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC
Q 001380 660 QGLAYNAKKNLLYVADTENHALREIDFVNDT---VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG 736 (1089)
Q Consensus 660 ~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~---v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~ 736 (1089)
..+.+.++|+. .++-..+..|+.++..++. ...+ ...-..-.+++|+|++ .+.++...
T Consensus 163 ~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~~l-----------------~~h~~~v~~~~fs~d~-~~l~s~s~ 223 (456)
T KOG0266|consen 163 TCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLREL-----------------SGHTRGVSDVAFSPDG-SYLLSGSD 223 (456)
T ss_pred EEEEEcCCCCe-EEEccCCCcEEEeecccccchhhccc-----------------cccccceeeeEECCCC-cEEEEecC
Confidence 44777888884 4444456666666654333 1111 1122356789999998 57777777
Q ss_pred CcEEEEEEC-CCC-eEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeE-EEecC
Q 001380 737 QHQIWEHST-VDG-VTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR-LLAGG 813 (1089)
Q Consensus 737 ~~~I~~~~~-~~g-~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~-~~~g~ 813 (1089)
..+|+.||. ..+ .++++.|.. ...+.++++++| +++++-+..++|+.++..++... .+.+.
T Consensus 224 D~tiriwd~~~~~~~~~~l~gH~---------------~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~h 287 (456)
T KOG0266|consen 224 DKTLRIWDLKDDGRNLKTLKGHS---------------TYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGH 287 (456)
T ss_pred CceEEEeeccCCCeEEEEecCCC---------------CceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeecc
Confidence 889999998 443 345565432 234799999999 89999999999999999875543 34332
Q ss_pred CCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeE---EEEeccCCCCCCCCcccccc
Q 001380 814 DPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRV---STLAGIGKAGFKDGAALAAQ 890 (1089)
Q Consensus 814 ~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v---~t~~g~g~~g~~~g~~~~~~ 890 (1089)
. +.-.++++.++|+++++-++.+.|+.+|..++.. .++.+...
T Consensus 288 s----------------------~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~------------ 333 (456)
T KOG0266|consen 288 S----------------------DGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAEN------------ 333 (456)
T ss_pred C----------------------CceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCC------------
Confidence 1 1346788999999888889999999999998883 34433210
Q ss_pred cCCCceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 891 LSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 891 l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
-..-+.++++++|...++-+.++.++.+++...
T Consensus 334 ~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 334 SAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG 366 (456)
T ss_pred CCceeEEEECCCCcEEEEecCCCeEEEEEccCC
Confidence 001266778899988888888889999999865
|
|
| >COG4996 Predicted phosphatase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.9e-05 Score=71.20 Aligned_cols=81 Identities=20% Similarity=0.138 Sum_probs=66.5
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHc------CC
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKIL------NV 237 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~l------gv 237 (1089)
..++|.+++++.++++.|+-+..+|=+....+-..|+.+++. .||+.++.-. .--+-.|+-+++..+ .+
T Consensus 40 v~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~~-~yFhy~VieP----hP~K~~ML~~llr~i~~er~~~i 114 (164)
T COG4996 40 VHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDLL-QYFHYIVIEP----HPYKFLMLSQLLREINTERNQKI 114 (164)
T ss_pred EEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhchh-hhEEEEEecC----CChhHHHHHHHHHHHHHhhcccc
Confidence 478999999999999999999999999999999999999996 9999887532 112335666666544 46
Q ss_pred CCCcEEEEcCCh
Q 001380 238 PTSECIVIEDAL 249 (1089)
Q Consensus 238 ~p~~~v~VGD~~ 249 (1089)
.|++++++.|+.
T Consensus 115 kP~~Ivy~DDR~ 126 (164)
T COG4996 115 KPSEIVYLDDRR 126 (164)
T ss_pred CcceEEEEeccc
Confidence 899999999987
|
|
| >COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.84 E-value=5e-05 Score=71.54 Aligned_cols=67 Identities=39% Similarity=0.628 Sum_probs=53.0
Q ss_pred cccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHH
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLW 528 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~ 528 (1089)
...++++++++||++||++|+.++|.+.++.+++.. .+.++.++.. |....+.
T Consensus 28 ~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~--------------------------~~~~~~~ 80 (127)
T COG0526 28 SELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD--------------------------DENPDLA 80 (127)
T ss_pred hhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC--------------------------CCChHHH
Confidence 444589999999999999999999999999999886 5788888641 1345666
Q ss_pred HHhC--CCceeEEEEE
Q 001380 529 RELG--VNSWPTFAVV 542 (1089)
Q Consensus 529 ~~~~--v~~~Pt~~li 542 (1089)
..|+ +..+|+.++.
T Consensus 81 ~~~~~~~~~~p~~~~~ 96 (127)
T COG0526 81 AEFGVAVRSIPTLLLF 96 (127)
T ss_pred HHHhhhhccCCeEEEE
Confidence 6676 7777887655
|
|
| >TIGR00685 T6PP trehalose-phosphatase | Back alignment and domain information |
|---|
Probab=97.83 E-value=7.5e-05 Score=81.15 Aligned_cols=79 Identities=13% Similarity=0.080 Sum_probs=60.4
Q ss_pred EEEcCCccCCCCC----HHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHc-------CCeEEEEcCCCCHHHHhhcCCc
Q 001380 212 IVSADAFENLKPA----PDIFLSASKILNVPTSECIVIEDALAGVQAAKAA-------QMRCIAVTTTLSEERLKEASPS 280 (1089)
Q Consensus 212 i~~~~~~~~~KP~----~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~a-------G~~~i~V~~g~~~~~l~~~~~d 280 (1089)
++.+..+...||+ ...++.+++++++.+++++||||+.+|+.+++.+ |..++.|..|. ....++
T Consensus 152 v~~g~~~~e~~p~~~~Kg~a~~~~~~~~~~~~~~~i~iGD~~~D~~~~~~~~~~~~~~g~~~v~v~~g~-----~~~~A~ 226 (244)
T TIGR00685 152 VMDGKAVVELKPRFVNKGEIVKRLLWHQPGSGISPVYLGDDITDEDAFRVVNNQWGNYGFYPVPIGSGS-----KKTVAK 226 (244)
T ss_pred EEECCeEEEEeeCCCCHHHHHHHHHHhcccCCCceEEEcCCCcHHHHHHHHhcccCCCCeEEEEEecCC-----cCCCce
Confidence 3344433344554 5899999999999999999999999999999998 66777776441 345689
Q ss_pred EEecCcccCCHHHHHhc
Q 001380 281 LIRKEIGSVSLNDILTG 297 (1089)
Q Consensus 281 ~vi~dl~el~i~~ll~~ 297 (1089)
+++++..++ .++|..
T Consensus 227 ~~~~~~~~v--~~~L~~ 241 (244)
T TIGR00685 227 FHLTGPQQV--LEFLGL 241 (244)
T ss_pred EeCCCHHHH--HHHHHH
Confidence 999999886 666654
|
At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes. |
| >KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.8e-05 Score=81.60 Aligned_cols=91 Identities=23% Similarity=0.376 Sum_probs=73.6
Q ss_pred CCEEEEEEecCCCcchhhhhhhHHHHHHHcCCC---CEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDM---PFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 453 gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~---~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
...|+|+|+|.||+..+..+|.+.+.+++|+++ +=+|.|. |-+|.+..++.
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~--------------------------VDcd~e~~ia~ 66 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGK--------------------------VDCDKEDDIAD 66 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEE--------------------------cccchhhHHhh
Confidence 478999999999999999999999877766531 3334443 12367889999
Q ss_pred HhCCCceeEEEEECCCCcEEEE-ecCCCchhhHHHHHHHHHH
Q 001380 530 ELGVNSWPTFAVVGPNGKLLAQ-LAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i~~~-~~G~~~~~~l~~~l~~~l~ 570 (1089)
+|.|..+||.-|+ .+|.+..+ |+|..+.+.+.++|+..++
T Consensus 67 ky~I~KyPTlKvf-rnG~~~~rEYRg~RsVeaL~efi~kq~s 107 (375)
T KOG0912|consen 67 KYHINKYPTLKVF-RNGEMMKREYRGQRSVEALIEFIEKQLS 107 (375)
T ss_pred hhccccCceeeee-eccchhhhhhccchhHHHHHHHHHHHhc
Confidence 9999999999999 89999885 9999999999888876543
|
|
| >KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=3.4e-05 Score=80.35 Aligned_cols=88 Identities=18% Similarity=0.411 Sum_probs=65.4
Q ss_pred CCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEE-EEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTV-VGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 453 gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~v-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
...++|+|||+||.+|++..|.+.+.-.++++.|+.| ||- .+ ...-..++..|
T Consensus 43 ddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGK----lD----------------------aT~f~aiAnef 96 (468)
T KOG4277|consen 43 DDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGK----LD----------------------ATRFPAIANEF 96 (468)
T ss_pred CCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecc----cc----------------------cccchhhHhhh
Confidence 3689999999999999999999999887777655432 111 01 01235789999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
||+++||..++ + |-..+.+.|....+.+.++-.+.
T Consensus 97 giqGYPTIk~~-k-gd~a~dYRG~R~Kd~iieFAhR~ 131 (468)
T KOG4277|consen 97 GIQGYPTIKFF-K-GDHAIDYRGGREKDAIIEFAHRC 131 (468)
T ss_pred ccCCCceEEEe-c-CCeeeecCCCccHHHHHHHHHhc
Confidence 99999999999 3 33456788888888887775543
|
|
| >COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.5e-05 Score=90.72 Aligned_cols=97 Identities=22% Similarity=0.257 Sum_probs=72.8
Q ss_pred cccCCCEEEEEEecCCCcchhhhhhhHH-HHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhH
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVLPDLE-FLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNL 527 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~p~l~-~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l 527 (1089)
.+-++|+|+|||+|.||..|+..-+..- +.....+-.+++.+-++..+ +. +.+.++
T Consensus 470 a~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~-----~~------------------p~~~~l 526 (569)
T COG4232 470 AEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTA-----ND------------------PAITAL 526 (569)
T ss_pred HhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecC-----CC------------------HHHHHH
Confidence 3445679999999999999997766554 44444555678888775422 11 123456
Q ss_pred HHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 528 WRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 528 ~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
-++||+-+.|++++++++|+-.-...|..+.+.+.+.+++.
T Consensus 527 Lk~~~~~G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 527 LKRLGVFGVPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred HHHcCCCCCCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 67899999999999999998877788999999888887654
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.016 Score=62.48 Aligned_cols=197 Identities=17% Similarity=0.266 Sum_probs=114.4
Q ss_pred CCeEEEEeCCCCEEEEEeC-CCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCe
Q 001380 612 NNRLFISDSNHNRIVVTDL-DGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDT 690 (1089)
Q Consensus 612 ~g~L~vsd~~~~~I~~~~~-~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~ 690 (1089)
++++|+++ ..+.|+.+|. +|+.+..+...+. +..+ ..+ .++.+||+... +.|+.+|..+|.
T Consensus 36 ~~~v~~~~-~~~~l~~~d~~tG~~~W~~~~~~~------------~~~~--~~~--~~~~v~v~~~~-~~l~~~d~~tG~ 97 (238)
T PF13360_consen 36 GGRVYVAS-GDGNLYALDAKTGKVLWRFDLPGP------------ISGA--PVV--DGGRVYVGTSD-GSLYALDAKTGK 97 (238)
T ss_dssp TTEEEEEE-TTSEEEEEETTTSEEEEEEECSSC------------GGSG--EEE--ETTEEEEEETT-SEEEEEETTTSC
T ss_pred CCEEEEEc-CCCEEEEEECCCCCEEEEeecccc------------ccce--eee--cccccccccce-eeeEecccCCcc
Confidence 89999995 5789999997 7998877665321 1112 223 34558988844 499999977776
Q ss_pred EEEE-ecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCC
Q 001380 691 VRTL-AGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLN 769 (1089)
Q Consensus 691 v~~~-ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~ 769 (1089)
+.-- ....... ..+..+...+++ ++.+|++.. ++.|+.+|+.+|.+..-...+... +....
T Consensus 98 ~~W~~~~~~~~~-----------~~~~~~~~~~~~--~~~~~~~~~-~g~l~~~d~~tG~~~w~~~~~~~~---~~~~~- 159 (238)
T PF13360_consen 98 VLWSIYLTSSPP-----------AGVRSSSSPAVD--GDRLYVGTS-SGKLVALDPKTGKLLWKYPVGEPR---GSSPI- 159 (238)
T ss_dssp EEEEEEE-SSCT-----------CSTB--SEEEEE--TTEEEEEET-CSEEEEEETTTTEEEEEEESSTT----SS--E-
T ss_pred eeeeeccccccc-----------cccccccCceEe--cCEEEEEec-cCcEEEEecCCCcEEEEeecCCCC---CCcce-
Confidence 6544 2222110 112344455555 568888775 789999999998774332111100 00000
Q ss_pred ccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc
Q 001380 770 TSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ 849 (1089)
Q Consensus 770 ~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~ 849 (1089)
..+....+-.+..++ .+|++..... +..++..++.... ... +..+.+.....++.
T Consensus 160 ~~~~~~~~~~~~~~~-~v~~~~~~g~-~~~~d~~tg~~~w-~~~----------------------~~~~~~~~~~~~~~ 214 (238)
T PF13360_consen 160 SSFSDINGSPVISDG-RVYVSSGDGR-VVAVDLATGEKLW-SKP----------------------ISGIYSLPSVDGGT 214 (238)
T ss_dssp EEETTEEEEEECCTT-EEEEECCTSS-EEEEETTTTEEEE-EEC----------------------SS-ECECEECCCTE
T ss_pred eeecccccceEEECC-EEEEEcCCCe-EEEEECCCCCEEE-Eec----------------------CCCccCCceeeCCE
Confidence 011111222222344 9999886654 5555888766432 110 11233323344678
Q ss_pred EEEEeCCCCEEEEEeCCCCeE
Q 001380 850 IYVADSYNHKIKKLDPASNRV 870 (1089)
Q Consensus 850 lyVaD~~n~~I~~~d~~~~~v 870 (1089)
+|+.+ ..++|..+|+.+|++
T Consensus 215 l~~~~-~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 215 LYVTS-SDGRLYALDLKTGKV 234 (238)
T ss_dssp EEEEE-TTTEEEEEETTTTEE
T ss_pred EEEEe-CCCEEEEEECCCCCE
Confidence 99998 789999999998875
|
... |
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0021 Score=76.06 Aligned_cols=193 Identities=20% Similarity=0.342 Sum_probs=132.7
Q ss_pred cceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCc
Q 001380 659 PQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQH 738 (1089)
Q Consensus 659 P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~ 738 (1089)
..|..+.|+.+ +.++..+...+|.+.+.+..-......+ +.=-|++.|.|.| .|++.++..
T Consensus 454 Vyg~sFsPd~r-fLlScSED~svRLWsl~t~s~~V~y~GH----------------~~PVwdV~F~P~G--yYFatas~D 514 (707)
T KOG0263|consen 454 VYGCSFSPDRR-FLLSCSEDSSVRLWSLDTWSCLVIYKGH----------------LAPVWDVQFAPRG--YYFATASHD 514 (707)
T ss_pred eeeeeeccccc-ceeeccCCcceeeeecccceeEEEecCC----------------CcceeeEEecCCc--eEEEecCCC
Confidence 37888999988 7788888899999998876554443211 1124899999987 555555433
Q ss_pred ---EEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEE-EecCC
Q 001380 739 ---QIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRL-LAGGD 814 (1089)
Q Consensus 739 ---~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~-~~g~~ 814 (1089)
++|..|. ....+.|+|. ++.-..+.++|+. ....+.+...+||.++..+|.+.. +.|.
T Consensus 515 ~tArLWs~d~-~~PlRifagh---------------lsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH- 576 (707)
T KOG0263|consen 515 QTARLWSTDH-NKPLRIFAGH---------------LSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSVRIFTGH- 576 (707)
T ss_pred ceeeeeeccc-CCchhhhccc---------------ccccceEEECCcc-cccccCCCCceEEEEEcCCCcEEEEecCC-
Confidence 4555543 3344555542 2334468899986 333444666789999988776544 4332
Q ss_pred CCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCe-EEEEeccCCCCCCCCcccccccCC
Q 001380 815 PIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNR-VSTLAGIGKAGFKDGAALAAQLSE 893 (1089)
Q Consensus 815 ~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~-v~t~~g~g~~g~~~g~~~~~~l~~ 893 (1089)
. ..-..|+++|+|.-.++-...+.|+.+|..++. +.++.+. -+.
T Consensus 577 ------------~---------~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H--------------t~t 621 (707)
T KOG0263|consen 577 ------------K---------GPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH--------------TGT 621 (707)
T ss_pred ------------C---------CceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcc--------------cCc
Confidence 1 124678999999988888888999999987754 3344332 122
Q ss_pred CceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 894 PAGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 894 P~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
-..|.+..+|++++++..++.|+..|+...
T Consensus 622 i~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 622 IYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred eeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 456788889999999999999999998764
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.017 Score=63.89 Aligned_cols=113 Identities=15% Similarity=0.156 Sum_probs=73.4
Q ss_pred CCeEEEEeCC----CCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC---------
Q 001380 612 NNRLFISDSN----HNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE--------- 677 (1089)
Q Consensus 612 ~g~L~vsd~~----~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~--------- 677 (1089)
..++||.|.. .+|++++|.+ ++++-.+..+ | . ..++++|+|+.+|++.+.
T Consensus 2 ~~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~~g--------------~-~-~~~~~spdgk~~y~a~T~~sR~~rG~R 65 (342)
T PF06433_consen 2 AHRVYVQDPVFFHMTSRVYVIDADSGKLLGMIDTG--------------F-L-GNVALSPDGKTIYVAETFYSRGTRGER 65 (342)
T ss_dssp TTEEEEEE-GGGGSSEEEEEEETTTTEEEEEEEEE--------------S-S-EEEEE-TTSSEEEEEEEEEEETTEEEE
T ss_pred CcEEEEECCccccccceEEEEECCCCcEEEEeecc--------------c-C-CceeECCCCCEEEEEEEEEeccccccc
Confidence 4689999973 3699999987 6666555443 1 2 347789999999999874
Q ss_pred CCEEEEEECCCCeEEE--EecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC-cEEEEEECCCCeEE
Q 001380 678 NHALREIDFVNDTVRT--LAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ-HQIWEHSTVDGVTR 751 (1089)
Q Consensus 678 n~~I~~~d~~~g~v~~--~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~-~~I~~~~~~~g~~~ 751 (1089)
...|..+|.++-..+. ....+ ...+.+..++-.+++.+|+.+||.+... ..|-.+|.+.+.+.
T Consensus 66 tDvv~~~D~~TL~~~~EI~iP~k-----------~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv 131 (342)
T PF06433_consen 66 TDVVEIWDTQTLSPTGEIEIPPK-----------PRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVV 131 (342)
T ss_dssp EEEEEEEETTTTEEEEEEEETTS------------B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEE
T ss_pred eeEEEEEecCcCcccceEecCCc-----------chheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCcee
Confidence 2356678877643332 11111 0123356888999999999999998774 46888999887654
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PRK13703 conjugal pilus assembly protein TraF; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00011 Score=78.14 Aligned_cols=104 Identities=15% Similarity=0.111 Sum_probs=81.1
Q ss_pred cccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCc-cceeecCChhH
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGIS-HPVVNDGDMNL 527 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~d~~~~l 527 (1089)
+++..++-|+.||.+-|+.|.++.|.|+.+.++| |+.|++||++.. +++ ||.. -.+...
T Consensus 139 ~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG~----------------~~p~fp~~-~~d~gq 198 (248)
T PRK13703 139 AKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY---GLSVIPVSVDGV----------------INPLLPDS-RTDQGQ 198 (248)
T ss_pred HHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCC----------------CCCCCCCC-ccChhH
Confidence 5566789999999999999999999999999997 589999987421 111 3322 134466
Q ss_pred HHHhCCCceeEEEEECCCC-cEEEEecCCCchhhHHHHHHHHHHHh
Q 001380 528 WRELGVNSWPTFAVVGPNG-KLLAQLAGEGHRKDLDDLVEAALLFY 572 (1089)
Q Consensus 528 ~~~~~v~~~Pt~~lid~~G-~i~~~~~G~~~~~~l~~~l~~~l~~~ 572 (1089)
++.+||..+|++||++++. ++.-...|..+.++|.+-|..+...+
T Consensus 199 a~~l~v~~~PAl~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~t~~ 244 (248)
T PRK13703 199 AQRLGVKYFPALMLVDPKSGSVRPLSYGFITQDDLAKRFLNVSTDF 244 (248)
T ss_pred HHhcCCcccceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHHhcc
Confidence 7899999999999999996 55555788899999888877666544
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.016 Score=65.72 Aligned_cols=242 Identities=16% Similarity=0.122 Sum_probs=148.9
Q ss_pred CCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCC
Q 001380 600 LKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENH 679 (1089)
Q Consensus 600 l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~ 679 (1089)
-+.-..+++.+ ++..+++-+..+.|..|+........+.+. ..-+.-.+++.+..+. +|...+ ..
T Consensus 320 nK~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~------------~h~nqI~~~~~~~~~~-~~t~g~-Dd 384 (603)
T KOG0318|consen 320 NKSITALTVSP-DGKTIYSGSYDGHINSWDSGSGTSDRLAGK------------GHTNQIKGMAASESGE-LFTIGW-DD 384 (603)
T ss_pred ccceeEEEEcC-CCCEEEeeccCceEEEEecCCccccccccc------------cccceEEEEeecCCCc-EEEEec-CC
Confidence 34555788887 556666666788999998753332222211 1234567888886666 666554 55
Q ss_pred EEEEEECCCCeEEEE--ecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCC
Q 001380 680 ALREIDFVNDTVRTL--AGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDG 757 (1089)
Q Consensus 680 ~I~~~d~~~g~v~~~--ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g 757 (1089)
.|++++...+-.+.- ...| +.|.++++.++++.+.++... .|..+...++ +....
T Consensus 385 ~l~~~~~~~~~~t~~~~~~lg-----------------~QP~~lav~~d~~~avv~~~~--~iv~l~~~~~-~~~~~--- 441 (603)
T KOG0318|consen 385 TLRVISLKDNGYTKSEVVKLG-----------------SQPKGLAVLSDGGTAVVACIS--DIVLLQDQTK-VSSIP--- 441 (603)
T ss_pred eEEEEecccCcccccceeecC-----------------CCceeEEEcCCCCEEEEEecC--cEEEEecCCc-ceeec---
Confidence 788887643221111 1111 468999999988777777643 3333332111 11111
Q ss_pred ccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCcccccccc
Q 001380 758 YERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQ 837 (1089)
Q Consensus 758 ~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~ 837 (1089)
. -.+|+++|++|+++.+-| --..+.|+.+.+.++.....+--. ....
T Consensus 442 ------------~-~y~~s~vAv~~~~~~vaV-GG~Dgkvhvysl~g~~l~ee~~~~-------------------~h~a 488 (603)
T KOG0318|consen 442 ------------I-GYESSAVAVSPDGSEVAV-GGQDGKVHVYSLSGDELKEEAKLL-------------------EHRA 488 (603)
T ss_pred ------------c-ccccceEEEcCCCCEEEE-ecccceEEEEEecCCcccceeeee-------------------cccC
Confidence 1 136889999999855544 445677999998865532111000 0012
Q ss_pred CceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEE
Q 001380 838 HPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRY 917 (1089)
Q Consensus 838 ~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~ 917 (1089)
.+..|+++|||..+++--.++++..+|.+++++.+-- .+| .-..-.+|+-.|+..++.+.+-...|.+
T Consensus 489 ~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~----w~F--------HtakI~~~aWsP~n~~vATGSlDt~Vii 556 (603)
T KOG0318|consen 489 AITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNR----WAF--------HTAKINCVAWSPNNKLVATGSLDTNVII 556 (603)
T ss_pred CceEEEECCCCcEEEEeccCCcEEEEEcccCceecce----eee--------eeeeEEEEEeCCCceEEEeccccceEEE
Confidence 3678999999987777778899999999888774321 110 1123557777888777777777888888
Q ss_pred EeCCCCC
Q 001380 918 LDLNKEE 924 (1089)
Q Consensus 918 ~~~~~~~ 924 (1089)
++.+...
T Consensus 557 ysv~kP~ 563 (603)
T KOG0318|consen 557 YSVKKPA 563 (603)
T ss_pred EEccChh
Confidence 8888763
|
|
| >TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00019 Score=75.83 Aligned_cols=44 Identities=14% Similarity=0.014 Sum_probs=40.5
Q ss_pred cCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeE
Q 001380 219 ENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRC 262 (1089)
Q Consensus 219 ~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~ 262 (1089)
..+.+|+..++.++++++++++++++|||+.+|+.+++.+|+..
T Consensus 159 p~~~~K~~~~~~~~~~~~~~~~~~~~~GD~~nD~~~~~~~~~~v 202 (204)
T TIGR01484 159 PAGVDKGSALQALLKELNGKRDEILAFGDSGNDEEMFEVAGLAV 202 (204)
T ss_pred cCCCChHHHHHHHHHHhCCCHHHEEEEcCCHHHHHHHHHcCCce
Confidence 45788999999999999999999999999999999999999754
|
The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear. |
| >cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells | Back alignment and domain information |
|---|
Probab=97.75 E-value=8.8e-05 Score=69.30 Aligned_cols=91 Identities=15% Similarity=0.142 Sum_probs=58.7
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCC--CCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD--MPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~--~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
+.+.+||.|+|+| |.|-+ +|...+|+.+|.. ..+.|--|.++++.. ..+.+|++
T Consensus 17 ~~~~vlV~F~A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~----------------------~~~~~L~~ 72 (116)
T cd03007 17 KFKYSLVKFDTAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGE----------------------KLNMELGE 72 (116)
T ss_pred cCCcEEEEEeCCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccc----------------------hhhHHHHH
Confidence 4578999999944 33333 4667777766632 235555554321110 12467999
Q ss_pred HhCCC--ceeEEEEECCCCc--EEEEecCC-CchhhHHHHHHH
Q 001380 530 ELGVN--SWPTFAVVGPNGK--LLAQLAGE-GHRKDLDDLVEA 567 (1089)
Q Consensus 530 ~~~v~--~~Pt~~lid~~G~--i~~~~~G~-~~~~~l~~~l~~ 567 (1089)
+|+|. ++||++++ ++|. ....+.|. .+.+.|.++|.+
T Consensus 73 ~y~I~~~gyPTl~lF-~~g~~~~~~~Y~G~~r~~~~lv~~v~~ 114 (116)
T cd03007 73 RYKLDKESYPVIYLF-HGGDFENPVPYSGADVTVDALQRFLKG 114 (116)
T ss_pred HhCCCcCCCCEEEEE-eCCCcCCCccCCCCcccHHHHHHHHHh
Confidence 99999 99999999 4553 22357785 788888777754
|
It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. |
| >KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.70 E-value=4.5e-05 Score=87.83 Aligned_cols=86 Identities=24% Similarity=0.436 Sum_probs=61.5
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCC-CEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDM-PFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRE 530 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~-~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~ 530 (1089)
.+|-|||.|||+||++|++..|.+++|+++|++. +++|.-+.. ..+++ ..
T Consensus 383 e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDa----------------------------TaNd~-~~ 433 (493)
T KOG0190|consen 383 EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDA----------------------------TANDV-PS 433 (493)
T ss_pred cccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecc----------------------------ccccC-cc
Confidence 5789999999999999999999999999999975 566655521 01111 23
Q ss_pred hCCCceeEEEEECCCCcE-EEEecCCCchhhHHHHHH
Q 001380 531 LGVNSWPTFAVVGPNGKL-LAQLAGEGHRKDLDDLVE 566 (1089)
Q Consensus 531 ~~v~~~Pt~~lid~~G~i-~~~~~G~~~~~~l~~~l~ 566 (1089)
..+.++||+++.-..++- .-.+.|...-+++..+|+
T Consensus 434 ~~~~~fPTI~~~pag~k~~pv~y~g~R~le~~~~fi~ 470 (493)
T KOG0190|consen 434 LKVDGFPTILFFPAGHKSNPVIYNGDRTLEDLKKFIK 470 (493)
T ss_pred ccccccceEEEecCCCCCCCcccCCCcchHHHHhhhc
Confidence 466779999999544432 234567766666666654
|
|
| >smart00775 LNS2 LNS2 domain | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00032 Score=70.31 Aligned_cols=94 Identities=13% Similarity=0.179 Sum_probs=61.6
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhH---HHHHHHC-----CCCCCCccEEEEcCC---------ccCCCC---C
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKV---DANLAAA-----GLPVSMFDAIVSADA---------FENLKP---A 224 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~---~~~l~~~-----gl~~~~fd~i~~~~~---------~~~~KP---~ 224 (1089)
...|++.++++.++++|++++++|++..... +..++.+ +++ ...++++.. +...+| +
T Consensus 27 ~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp---~g~li~~~g~~~~~~~~e~i~~~~~~~K 103 (157)
T smart00775 27 WTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLP---HGPVLLSPDRLFAALHREVISKKPEVFK 103 (157)
T ss_pred cCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCC---CceEEEcCCcchhhhhcccccCCHHHHH
Confidence 3468999999999999999999999876655 4667662 342 234444432 112333 4
Q ss_pred HHHHHHHHHHcCCCCCc-EEEEcCChhhHHHHHHcCCe
Q 001380 225 PDIFLSASKILNVPTSE-CIVIEDALAGVQAAKAAQMR 261 (1089)
Q Consensus 225 ~~~~~~~l~~lgv~p~~-~v~VGD~~~Di~aA~~aG~~ 261 (1089)
.+.+..+.+.+.-.--. ++.+|++.+|+++=+++|+.
T Consensus 104 ~~~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi~ 141 (157)
T smart00775 104 IACLRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIP 141 (157)
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCCC
Confidence 44555555544321122 34588889999999999984
|
This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance. |
| >KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00011 Score=85.45 Aligned_cols=90 Identities=21% Similarity=0.413 Sum_probs=72.4
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.++.+++.||++||++|.+..|.+.++...+++ .+.+..|.+ +.+..++++|
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~-~~~~~~vd~---------------------------~~~~~~~~~y 97 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG-KVKIGAVDC---------------------------DEHKDLCEKY 97 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcC-ceEEEEeCc---------------------------hhhHHHHHhc
Confidence 567899999999999999999999999999887 366666633 5678999999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
+|.+.||+.++.+. .....+.|..+.+.+..++...+.
T Consensus 98 ~i~gfPtl~~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 135 (383)
T KOG0191|consen 98 GIQGFPTLKVFRPG-KKPIDYSGPRNAESLAEFLIKELE 135 (383)
T ss_pred CCccCcEEEEEcCC-CceeeccCcccHHHHHHHHHHhhc
Confidence 99999999999766 444556677677777777655554
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0064 Score=69.07 Aligned_cols=189 Identities=16% Similarity=0.183 Sum_probs=103.9
Q ss_pred ceEEEeecCCeEE-EEeCCC----CEEEEEeCCC--CEEEEEecCCCCCC--CCC-CCCccccCCcceeEEeeCCCEEEE
Q 001380 604 GKLAIDILNNRLF-ISDSNH----NRIVVTDLDG--NFIVQIGSSGEEGL--RDG-SFDDATFNRPQGLAYNAKKNLLYV 673 (1089)
Q Consensus 604 ~~vavd~~~g~L~-vsd~~~----~~I~~~~~~g--~~~~~i~~~g~~g~--~dG-~~~~~~f~~P~gla~d~~g~~lyV 673 (1089)
.||++++.++++| |+|.+. -+++.++.+. .....+......-. .+| .+.. .-..+.||++.++|. +||
T Consensus 23 Sgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~-~~~D~Egi~~~~~g~-~~i 100 (326)
T PF13449_consen 23 SGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPK-NGLDPEGIAVPPDGS-FWI 100 (326)
T ss_pred eeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCc-CCCChhHeEEecCCC-EEE
Confidence 5788886567766 778766 2355544332 11111100001111 123 2222 223889999977777 999
Q ss_pred EECCC------CEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC----------
Q 001380 674 ADTEN------HALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ---------- 737 (1089)
Q Consensus 674 aD~~n------~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~---------- 737 (1089)
++-+. ++|++++.++..+..+.-......... .......=...-+|+++++|..||+++...
T Consensus 101 s~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~--~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 101 SSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDAN--GTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EeCCccCCCCCCEEEEECCCCcccceEccccccccccC--ccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 99999 999999988655555521111000000 000001112567899999998899987554
Q ss_pred -----cEEEEEECCC-C-eEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCC-------CCeEEEEEcC
Q 001380 738 -----HQIWEHSTVD-G-VTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSE-------SSSIRALNLK 803 (1089)
Q Consensus 738 -----~~I~~~~~~~-g-~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~-------~~~I~~~~~~ 803 (1089)
.+|+.||..+ + ....|.=. ....+....-..++.++.-+++ .++|.+.. ..+|+++++.
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~------ld~~~~~~~~~~isd~~al~d~-~lLvLER~~~~~~~~~~ri~~v~l~ 251 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYP------LDPPPTAPGDNGISDIAALPDG-RLLVLERDFSPGTGNYKRIYRVDLS 251 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEe------CCccccccCCCCceeEEEECCC-cEEEEEccCCCCccceEEEEEEEcc
Confidence 4577777764 2 12222200 0000000123457788888888 79998866 3367777765
|
|
| >PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A | Back alignment and domain information |
|---|
Probab=97.68 E-value=4.6e-05 Score=73.29 Aligned_cols=80 Identities=19% Similarity=0.322 Sum_probs=47.1
Q ss_pred cccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHH
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLW 528 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~ 528 (1089)
+.+..+..++.|-.+||+.|++.+|.|.++.+..+...+.++.. +++.+...+ .+
T Consensus 37 ~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~r-------d~~~el~~~-----------------~l- 91 (129)
T PF14595_consen 37 KSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILR-------DENKELMDQ-----------------YL- 91 (129)
T ss_dssp HT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-H-------HHHHHHTTT-----------------TT-
T ss_pred HhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEe-------cCChhHHHH-----------------HH-
Confidence 45566788899999999999999999999999865444555543 222221111 11
Q ss_pred HHhCCCceeEEEEECCCCcEEEEecC
Q 001380 529 RELGVNSWPTFAVVGPNGKLLAQLAG 554 (1089)
Q Consensus 529 ~~~~v~~~Pt~~lid~~G~i~~~~~G 554 (1089)
. .|...+|+++++|.+|+.+.++..
T Consensus 92 t-~g~~~IP~~I~~d~~~~~lg~wge 116 (129)
T PF14595_consen 92 T-NGGRSIPTFIFLDKDGKELGRWGE 116 (129)
T ss_dssp T--SS--SSEEEEE-TT--EEEEEES
T ss_pred h-CCCeecCEEEEEcCCCCEeEEEcC
Confidence 1 578899999999999999988754
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.022 Score=67.31 Aligned_cols=201 Identities=13% Similarity=0.133 Sum_probs=115.5
Q ss_pred EEeecCCe---EEEEeCC-CCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC--CCCE
Q 001380 607 AIDILNNR---LFISDSN-HNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT--ENHA 680 (1089)
Q Consensus 607 avd~~~g~---L~vsd~~-~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~--~n~~ 680 (1089)
+++|++.+ +|++..+ ...|++.+.+|.....+... .. .....+++|+|+.|.++-. ++..
T Consensus 191 ~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~-~g-------------~~~~p~wSPDG~~Laf~s~~~g~~d 256 (428)
T PRK01029 191 TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL-QG-------------NQLMPTFSPRKKLLAFISDRYGNPD 256 (428)
T ss_pred eEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC-CC-------------CccceEECCCCCEEEEEECCCCCcc
Confidence 66774433 4577643 45799999886544444332 10 1235688999976665532 3334
Q ss_pred EEE--EECCC---CeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC--CCcEEEEEECCC--CeEE
Q 001380 681 LRE--IDFVN---DTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA--GQHQIWEHSTVD--GVTR 751 (1089)
Q Consensus 681 I~~--~d~~~---g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~--~~~~I~~~~~~~--g~~~ 751 (1089)
|+. +++.+ +..+.+.... .......+|+|+|..|+++.. +..+||.++... +..+
T Consensus 257 i~~~~~~~~~g~~g~~~~lt~~~----------------~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~ 320 (428)
T PRK01029 257 LFIQSFSLETGAIGKPRRLLNEA----------------FGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR 320 (428)
T ss_pred eeEEEeecccCCCCcceEeecCC----------------CCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE
Confidence 443 45443 2333332110 012234689999987766543 345788887642 3333
Q ss_pred EEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCC--CCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCC
Q 001380 752 AFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSE--SSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDG 829 (1089)
Q Consensus 752 ~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~--~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg 829 (1089)
.+...+ ......+++|||+.|+++... ...|+.+++.++..+.+..+.
T Consensus 321 ~lt~~~---------------~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~--------------- 370 (428)
T PRK01029 321 LLTKKY---------------RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSP--------------- 370 (428)
T ss_pred EeccCC---------------CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCC---------------
Confidence 332111 122356789999888766443 357999999888776653211
Q ss_pred ccccccccCceEEEEccCCc-EEEEeC--CCCEEEEEeCCCCeEEEEe
Q 001380 830 MGSEVLLQHPLGVYCAKNGQ-IYVADS--YNHKIKKLDPASNRVSTLA 874 (1089)
Q Consensus 830 ~~~~~~l~~P~gva~~~~G~-lyVaD~--~n~~I~~~d~~~~~v~t~~ 874 (1089)
.......+++||+ |+++.. +...|..+|.+++....+.
T Consensus 371 -------~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 371 -------ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred -------CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 0123467888885 554432 3467889999888777765
|
|
| >PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed | Back alignment and domain information |
|---|
Probab=97.64 E-value=8e-05 Score=82.39 Aligned_cols=69 Identities=9% Similarity=0.012 Sum_probs=51.0
Q ss_pred ccCCCCCHHHHHHHHHHcCC---CCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC-C-H-HHHh--hcCCcEEecCcccC
Q 001380 218 FENLKPAPDIFLSASKILNV---PTSECIVIEDALAGVQAAKAAQMRCIAVTTTL-S-E-ERLK--EASPSLIRKEIGSV 289 (1089)
Q Consensus 218 ~~~~KP~~~~~~~~l~~lgv---~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~-~-~-~~l~--~~~~d~vi~dl~el 289 (1089)
...+-.|...++.+++.+|+ ++++++.|||+.||+.|-+.+|. .|..+. . . +.+. ...++++.....+=
T Consensus 182 ~~~g~sKg~al~~l~~~lgi~~~~~~~viafGDs~NDi~Ml~~ag~---gvAM~~~~~~~~~l~~~~~~~~~~~~~~~~~ 258 (271)
T PRK03669 182 LDASAGKDQAANWLIATYQQLSGTRPTTLGLGDGPNDAPLLDVMDY---AVVVKGLNREGVHLQDDDPARVYRTQREGPE 258 (271)
T ss_pred ecCCCCHHHHHHHHHHHHHhhcCCCceEEEEcCCHHHHHHHHhCCE---EEEecCCCCCCcccccccCCceEeccCCCcH
Confidence 44567788999999999999 99999999999999999999994 344432 1 2 2332 23567776665543
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0094 Score=65.53 Aligned_cols=154 Identities=14% Similarity=0.124 Sum_probs=111.7
Q ss_pred cceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCc
Q 001380 659 PQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQH 738 (1089)
Q Consensus 659 P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~ 738 (1089)
..-|.++|+.++ .+|-.....++.+|.++|......+.|. + .++...+|.|+| .=+|+.....
T Consensus 272 V~yi~wSPDdry-LlaCg~~e~~~lwDv~tgd~~~~y~~~~-~--------------~S~~sc~W~pDg-~~~V~Gs~dr 334 (519)
T KOG0293|consen 272 VSYIMWSPDDRY-LLACGFDEVLSLWDVDTGDLRHLYPSGL-G--------------FSVSSCAWCPDG-FRFVTGSPDR 334 (519)
T ss_pred eEEEEECCCCCe-EEecCchHheeeccCCcchhhhhcccCc-C--------------CCcceeEEccCC-ceeEecCCCC
Confidence 356788999884 4454455568899999988888776552 1 378899999999 5578877788
Q ss_pred EEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCC
Q 001380 739 QIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFP 818 (1089)
Q Consensus 739 ~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~ 818 (1089)
+|..+|.++.....+.|.. ...-++|++++||+.++..+ ....|+.++..+..-+-+..
T Consensus 335 ~i~~wdlDgn~~~~W~gvr--------------~~~v~dlait~Dgk~vl~v~-~d~~i~l~~~e~~~dr~lis------ 393 (519)
T KOG0293|consen 335 TIIMWDLDGNILGNWEGVR--------------DPKVHDLAITYDGKYVLLVT-VDKKIRLYNREARVDRGLIS------ 393 (519)
T ss_pred cEEEecCCcchhhcccccc--------------cceeEEEEEcCCCcEEEEEe-cccceeeechhhhhhhcccc------
Confidence 9999998887766666432 12357999999999998877 45678888766432221111
Q ss_pred CCccccCCCCCccccccccC-ceEEEEccCCcEEEEeCCCCEEEEEeCCC
Q 001380 819 DNLFKFGDRDGMGSEVLLQH-PLGVYCAKNGQIYVADSYNHKIKKLDPAS 867 (1089)
Q Consensus 819 ~~l~~~g~~dg~~~~~~l~~-P~gva~~~~G~lyVaD~~n~~I~~~d~~~ 867 (1089)
..+ -..+.++.+|++...+-.++.|...|.+.
T Consensus 394 -----------------e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e 426 (519)
T KOG0293|consen 394 -----------------EEQPITSFSISKDGKLALVNLQDQEIHLWDLEE 426 (519)
T ss_pred -----------------ccCceeEEEEcCCCcEEEEEcccCeeEEeecch
Confidence 122 35778889999999999999999998753
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.049 Score=65.17 Aligned_cols=206 Identities=8% Similarity=0.068 Sum_probs=122.7
Q ss_pred CceEEEeecCCeEEEEeCCCCEEEEEeCCCC--------EEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEE
Q 001380 603 PGKLAIDILNNRLFISDSNHNRIVVTDLDGN--------FIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVA 674 (1089)
Q Consensus 603 P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~--------~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVa 674 (1089)
-..++++|.+++++++-+..+.|.+|+.... .+..+.+. -.....++++|.++.++++
T Consensus 78 V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH--------------~~~V~~l~f~P~~~~iLaS 143 (493)
T PTZ00421 78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGH--------------TKKVGIVSFHPSAMNVLAS 143 (493)
T ss_pred EEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCC--------------CCcEEEEEeCcCCCCEEEE
Confidence 4568888766777777778899999986522 12222111 1235678999876436666
Q ss_pred ECCCCEEEEEECCCCeEEE-EecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEE-E
Q 001380 675 DTENHALREIDFVNDTVRT-LAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTR-A 752 (1089)
Q Consensus 675 D~~n~~I~~~d~~~g~v~~-~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~-~ 752 (1089)
-..++.|+.+|+.++.... +.+.. ....+++|+++| .++++....+.|..||+.++... .
T Consensus 144 gs~DgtVrIWDl~tg~~~~~l~~h~-----------------~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v~t 205 (493)
T PTZ00421 144 AGADMVVNVWDVERGKAVEVIKCHS-----------------DQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIVSS 205 (493)
T ss_pred EeCCCEEEEEECCCCeEEEEEcCCC-----------------CceEEEEEECCC-CEEEEecCCCEEEEEECCCCcEEEE
Confidence 6678899999998765433 32111 245789999988 55666667889999999877543 3
Q ss_pred EeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEe---CCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCC
Q 001380 753 FSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVAD---SESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDG 829 (1089)
Q Consensus 753 ~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad---~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg 829 (1089)
+.+... .....+.+.++++.++.+. +..+.|+.++.......... .... .
T Consensus 206 l~~H~~--------------~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~----------~~~d---~ 258 (493)
T PTZ00421 206 VEAHAS--------------AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST----------VDLD---Q 258 (493)
T ss_pred EecCCC--------------CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE----------eccC---C
Confidence 332110 0122445566664555433 23467888887642211000 0000 0
Q ss_pred ccccccccCceEEEEccCCc-EEEEeCCCCEEEEEeCCCCeEEEE
Q 001380 830 MGSEVLLQHPLGVYCAKNGQ-IYVADSYNHKIKKLDPASNRVSTL 873 (1089)
Q Consensus 830 ~~~~~~l~~P~gva~~~~G~-lyVaD~~n~~I~~~d~~~~~v~t~ 873 (1089)
-.......++++++ +|++..+.+.|+.+|..++.+...
T Consensus 259 ------~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 259 ------SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFC 297 (493)
T ss_pred ------CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence 00112345788886 556655688999999877765443
|
|
| >KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00098 Score=67.96 Aligned_cols=105 Identities=14% Similarity=0.141 Sum_probs=82.4
Q ss_pred CCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCc-cCCCCCHHHHHHHHHHcCCCCCc
Q 001380 163 SGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAF-ENLKPAPDIFLSASKILNVPTSE 241 (1089)
Q Consensus 163 ~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~-~~~KP~~~~~~~~l~~lgv~p~~ 241 (1089)
..+.++++...++..+..|++++|.|+++....+.+...-+-. ++-..+-+--+. --.|-....|..+.+.+|.++.+
T Consensus 121 k~~v~aDv~~a~e~w~~~g~~vyIYSSgsv~AqKllfg~s~~g-dl~~y~~gyfDt~iG~K~e~~sy~~I~~~Ig~s~~e 199 (254)
T KOG2630|consen 121 KAHVYADVLPAIERWSGEGVRVYIYSSGSVAAQKLLFGYSDAG-DLRKYISGYFDTTIGLKVESQSYKKIGHLIGKSPRE 199 (254)
T ss_pred cccccchhHHHHHHHhhcCceEEEEcCCcHHHHHHHHcccCcc-hHHHHhhhhhhccccceehhHHHHHHHHHhCCChhh
Confidence 3478999999999999999999999999988877776655332 222222221111 12466778999999999999999
Q ss_pred EEEEcCChhhHHHHHHcCCeEEEEcCC
Q 001380 242 CIVIEDALAGVQAAKAAQMRCIAVTTT 268 (1089)
Q Consensus 242 ~v~VGD~~~Di~aA~~aG~~~i~V~~g 268 (1089)
+++.-|-..-..+|+.+|+.+.++-+.
T Consensus 200 iLfLTd~~~Ea~aa~~aGl~a~l~~rP 226 (254)
T KOG2630|consen 200 ILFLTDVPREAAAARKAGLQAGLVSRP 226 (254)
T ss_pred eEEeccChHHHHHHHhcccceeeeecC
Confidence 999999999999999999988887663
|
|
| >PRK11509 hydrogenase-1 operon protein HyaE; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0005 Score=65.57 Aligned_cols=90 Identities=14% Similarity=0.087 Sum_probs=72.9
Q ss_pred EEEEEEec--CCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhC
Q 001380 455 VVVLDFWT--YCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELG 532 (1089)
Q Consensus 455 ~vll~Fwa--~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~ 532 (1089)
..||.|-+ --++-+....-.|.+|.++|.+..+.+.-|.. |.+.+++.+||
T Consensus 36 ~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDi---------------------------D~~~~LA~~fg 88 (132)
T PRK11509 36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADL---------------------------EQSEAIGDRFG 88 (132)
T ss_pred cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEEC---------------------------CCCHHHHHHcC
Confidence 34444432 35666777788889999999754577777754 67889999999
Q ss_pred CCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHHh
Q 001380 533 VNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFY 572 (1089)
Q Consensus 533 v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~~ 572 (1089)
|.++||++++ ++|+.+.+..|....+++.++|++++..-
T Consensus 89 V~siPTLl~F-kdGk~v~~i~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 89 VFRFPATLVF-TGGNYRGVLNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred CccCCEEEEE-ECCEEEEEEeCcCCHHHHHHHHHHHhcCc
Confidence 9999999999 99999999999999999999999888643
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0045 Score=68.27 Aligned_cols=238 Identities=14% Similarity=0.147 Sum_probs=153.6
Q ss_pred CceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCC-CEEEEEECCCCE
Q 001380 603 PGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKK-NLLYVADTENHA 680 (1089)
Q Consensus 603 P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g-~~lyVaD~~n~~ 680 (1089)
|...+.-..++.++++-+-.|.+.+++.. ++.+.++.+. . .+-.++.+.|.- +.-.++-...+.
T Consensus 177 Pis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH-~-------------~~v~~~~fhP~~~~~~lat~s~Dgt 242 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGH-T-------------SRVGAAVFHPVDSDLNLATASADGT 242 (459)
T ss_pred cceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEecc-c-------------cceeeEEEccCCCccceeeeccCCc
Confidence 33334333478888888888888888654 6666666554 2 245678888762 312344445666
Q ss_pred EEEEECCC-CeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCcc
Q 001380 681 LREIDFVN-DTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYE 759 (1089)
Q Consensus 681 I~~~d~~~-g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~ 759 (1089)
++.++.++ ..+..+-|. +..-..++|+|+| ....+....+.-+.||..++...... .
T Consensus 243 vklw~~~~e~~l~~l~gH-----------------~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~ElL~Q-E--- 300 (459)
T KOG0272|consen 243 VKLWKLSQETPLQDLEGH-----------------LARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSELLLQ-E--- 300 (459)
T ss_pred eeeeccCCCcchhhhhcc-----------------hhhheeeeecCCC-ceeeecccccchhhcccccchhhHhh-c---
Confidence 77776655 333344332 2355679999999 44455444555555666554322221 0
Q ss_pred ccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEE-EecCCCCCCCCccccCCCCCccccccccC
Q 001380 760 RNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRL-LAGGDPIFPDNLFKFGDRDGMGSEVLLQH 838 (1089)
Q Consensus 760 ~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~-~~g~~~~~~~~l~~~g~~dg~~~~~~l~~ 838 (1089)
+.-..-.+|++.+|| .|..+-...+.=|++|+.+|.... ++|. +..
T Consensus 301 ----------GHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~im~L~gH----------------------~k~ 347 (459)
T KOG0272|consen 301 ----------GHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRCIMFLAGH----------------------IKE 347 (459)
T ss_pred ----------ccccccceeEecCCC-ceeeccCccchhheeecccCcEEEEeccc----------------------ccc
Confidence 111235689999999 787776666666777887766543 3332 334
Q ss_pred ceEEEEccCCcEEEEeCCCCEEEEEeCCCCe-EEEEeccCCCCCCCCcccccccCCCceEEEcc-CCcEEEEECCCCEEE
Q 001380 839 PLGVYCAKNGQIYVADSYNHKIKKLDPASNR-VSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQ-NGNLFIADTNNNIIR 916 (1089)
Q Consensus 839 P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~-v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~-~G~lyVad~~n~~I~ 916 (1089)
-.+|+++|+|....+-+..+.+++.|..... +.++.+ .-+.-+.+++.+ .|..+++-...+.+.
T Consensus 348 I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipA--------------H~nlVS~Vk~~p~~g~fL~TasyD~t~k 413 (459)
T KOG0272|consen 348 ILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPA--------------HSNLVSQVKYSPQEGYFLVTASYDNTVK 413 (459)
T ss_pred eeeEeECCCceEEeecCCCCcEEEeeecccccceeccc--------------ccchhhheEecccCCeEEEEcccCccee
Confidence 6789999999999999999999999875432 344432 456678899997 677888888889998
Q ss_pred EEeCCCC
Q 001380 917 YLDLNKE 923 (1089)
Q Consensus 917 ~~~~~~~ 923 (1089)
++...+-
T Consensus 414 iWs~~~~ 420 (459)
T KOG0272|consen 414 IWSTRTW 420 (459)
T ss_pred eecCCCc
Confidence 8876664
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0015 Score=73.02 Aligned_cols=235 Identities=12% Similarity=0.190 Sum_probs=159.2
Q ss_pred eecCCeEEEEeCCCCEEEEEeC--CCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEEC
Q 001380 609 DILNNRLFISDSNHNRIVVTDL--DGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDF 686 (1089)
Q Consensus 609 d~~~g~L~vsd~~~~~I~~~~~--~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~ 686 (1089)
-|..+.|+.+-...+.|.+++. +++.++++-+. .. --..++++.+|. -+.+-.....|..+|.
T Consensus 223 fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH-~k-------------~Vrd~~~s~~g~-~fLS~sfD~~lKlwDt 287 (503)
T KOG0282|consen 223 FPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGH-RK-------------PVRDASFNNCGT-SFLSASFDRFLKLWDT 287 (503)
T ss_pred ccceeeEEEecCCCceEEEEEEecCcceehhhhcc-hh-------------hhhhhhccccCC-eeeeeecceeeeeecc
Confidence 3446788989888899998875 47788776654 22 125677777787 4566566788999999
Q ss_pred CCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEE-EEeCCCccccCCCC
Q 001380 687 VNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTR-AFSGDGYERNLNGS 765 (1089)
Q Consensus 687 ~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~-~~~g~g~~~~~~g~ 765 (1089)
++|.+..-...+. -|..+-++|++..+|++...+.+|..||..++.+. .+.
T Consensus 288 ETG~~~~~f~~~~-----------------~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd----------- 339 (503)
T KOG0282|consen 288 ETGQVLSRFHLDK-----------------VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD----------- 339 (503)
T ss_pred ccceEEEEEecCC-----------------CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH-----------
Confidence 9998887765443 57889999999899999999999999998776532 111
Q ss_pred CCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEc
Q 001380 766 SSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCA 845 (1089)
Q Consensus 766 ~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~ 845 (1089)
..+..-..|.+-++| .-||+.+..++++.++-......-. .....+...| .++..
T Consensus 340 ----~hLg~i~~i~F~~~g-~rFissSDdks~riWe~~~~v~ik~-------------------i~~~~~hsmP-~~~~~ 394 (503)
T KOG0282|consen 340 ----RHLGAILDITFVDEG-RRFISSSDDKSVRIWENRIPVPIKN-------------------IADPEMHTMP-CLTLH 394 (503)
T ss_pred ----hhhhheeeeEEccCC-ceEeeeccCccEEEEEcCCCccchh-------------------hcchhhccCc-ceecC
Confidence 122334578888877 8889999999999987553221100 0111122333 46778
Q ss_pred cCCcEEEEeCCCCEEEEEeCCCC----eEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCC
Q 001380 846 KNGQIYVADSYNHKIKKLDPASN----RVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLN 921 (1089)
Q Consensus 846 ~~G~lyVaD~~n~~I~~~d~~~~----~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~ 921 (1089)
|+|..+.+.+..++|..+...-. .-..+.|.-.+|| +..+.+.+||..+++...++++..++-+
T Consensus 395 P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGy------------s~~v~fSpDG~~l~SGdsdG~v~~wdwk 462 (503)
T KOG0282|consen 395 PNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGY------------SCQVDFSPDGRTLCSGDSDGKVNFWDWK 462 (503)
T ss_pred CCCCeehhhccCceEEEEecccccccCHhhhhcceeccCc------------eeeEEEcCCCCeEEeecCCccEEEeech
Confidence 89999999999999988854221 2233334333332 4456666777777777777777777766
Q ss_pred CC
Q 001380 922 KE 923 (1089)
Q Consensus 922 ~~ 923 (1089)
+-
T Consensus 463 t~ 464 (503)
T KOG0282|consen 463 TT 464 (503)
T ss_pred hh
Confidence 53
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0017 Score=71.56 Aligned_cols=193 Identities=13% Similarity=0.108 Sum_probs=133.4
Q ss_pred CCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCE
Q 001380 601 KFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHA 680 (1089)
Q Consensus 601 ~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~ 680 (1089)
..-..+++.| +|++..+-+..+.-..+|...+.......+.. ....++++.++|. |..+..-...
T Consensus 262 ~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs-------------~~v~~iaf~~DGS-L~~tGGlD~~ 326 (459)
T KOG0272|consen 262 ARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQEGHS-------------KGVFSIAFQPDGS-LAATGGLDSL 326 (459)
T ss_pred hhheeeeecC-CCceeeecccccchhhcccccchhhHhhcccc-------------cccceeEecCCCc-eeeccCccch
Confidence 4455688987 88888888777777778776433221111111 2357899999998 6666554555
Q ss_pred EEEEECCCCe-EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeE-EEEeCCCc
Q 001380 681 LREIDFVNDT-VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVT-RAFSGDGY 758 (1089)
Q Consensus 681 I~~~d~~~g~-v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~-~~~~g~g~ 758 (1089)
-|++|+.+|. +-.++|.. ..-.+|+|+|+| +...+..+.+++.+||+..... ..+.
T Consensus 327 ~RvWDlRtgr~im~L~gH~-----------------k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~~ly~ip---- 384 (459)
T KOG0272|consen 327 GRVWDLRTGRCIMFLAGHI-----------------KEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRSELYTIP---- 384 (459)
T ss_pred hheeecccCcEEEEecccc-----------------cceeeEeECCCc-eEEeecCCCCcEEEeeecccccceecc----
Confidence 5788988765 55555432 356789999988 8889988889888888764332 2222
Q ss_pred cccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCC-eEEEecCCCCCCCCccccCCCCCcccccccc
Q 001380 759 ERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGG-SRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQ 837 (1089)
Q Consensus 759 ~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~-~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~ 837 (1089)
+.-+--+.+.++|+.++..++.+..+++..++..+.. ++.++|.. .
T Consensus 385 -----------AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe----------------------~ 431 (459)
T KOG0272|consen 385 -----------AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHE----------------------G 431 (459)
T ss_pred -----------cccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCc----------------------c
Confidence 2333467899998767999999999999999877543 34555542 1
Q ss_pred CceEEEEccCCcEEEEeCCCCEEEEE
Q 001380 838 HPLGVYCAKNGQIYVADSYNHKIKKL 863 (1089)
Q Consensus 838 ~P~gva~~~~G~lyVaD~~n~~I~~~ 863 (1089)
.-.++.+.+||...++-++.+.|+-.
T Consensus 432 kV~s~Dis~d~~~i~t~s~DRT~KLW 457 (459)
T KOG0272|consen 432 KVISLDISPDSQAIATSSFDRTIKLW 457 (459)
T ss_pred ceEEEEeccCCceEEEeccCceeeec
Confidence 35678888999988888888877654
|
|
| >TIGR01680 Veg_Stor_Prot vegetative storage protein | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00068 Score=72.41 Aligned_cols=98 Identities=17% Similarity=0.200 Sum_probs=63.9
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCCh---HhHHHHHHHCCCCCCCccEEEEcCCccCCCC-----CHHHHHHHHHHc
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADR---IKVDANLAAAGLPVSMFDAIVSADAFENLKP-----APDIFLSASKIL 235 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~---~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP-----~~~~~~~~l~~l 235 (1089)
.+..|++.++.+.++++|++|+++||+.. +.+...|++.|+. .+ +.++-.......+. |.+...+.. +-
T Consensus 144 ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~-~~-~~LiLR~~~D~~~~~av~yKs~~R~~li-~e 220 (275)
T TIGR01680 144 APALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYH-TW-EKLILKDPQDNSAENAVEYKTAARAKLI-QE 220 (275)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCC-Cc-ceeeecCCCCCccchhHHHHHHHHHHHH-Hc
Confidence 37899999999999999999999999854 5567778888985 43 55555433221222 222222222 22
Q ss_pred CCCCCcEEEEcCChhhHHHHHHcCCeEEEEc
Q 001380 236 NVPTSECIVIEDALAGVQAAKAAQMRCIAVT 266 (1089)
Q Consensus 236 gv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~ 266 (1089)
|. .=+..|||.++|+.+....+.+++-.-
T Consensus 221 GY--rIv~~iGDq~sDl~G~~~g~~RtFKLP 249 (275)
T TIGR01680 221 GY--NIVGIIGDQWNDLKGEHRGAIRSFKLP 249 (275)
T ss_pred Cc--eEEEEECCCHHhccCCCccCcceecCC
Confidence 33 337899999999976653334655543
|
The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0054 Score=65.52 Aligned_cols=168 Identities=18% Similarity=0.193 Sum_probs=104.9
Q ss_pred CCCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCC
Q 001380 601 KFPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENH 679 (1089)
Q Consensus 601 ~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~ 679 (1089)
.|-.|+++- +++||.---.++..+++|.+ -+.+.++.-.++ -.||+. +|..||++|. ++
T Consensus 90 ~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~E---------------GWGLt~--dg~~Li~SDG-S~ 149 (264)
T PF05096_consen 90 YFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGE---------------GWGLTS--DGKRLIMSDG-SS 149 (264)
T ss_dssp --EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS-----------------EEEE--CSSCEEEE-S-SS
T ss_pred ccceeEEEE--CCEEEEEEecCCeEEEEccccceEEEEEecCCc---------------ceEEEc--CCCEEEEECC-cc
Confidence 477889986 78999999999999999997 455556655432 279995 4666999995 78
Q ss_pred EEEEEECCCC-eEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCC-C
Q 001380 680 ALREIDFVND-TVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGD-G 757 (1089)
Q Consensus 680 ~I~~~d~~~g-~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~-g 757 (1089)
+|+.+|+++- .+.++.-+ ..+ .++..-+-|-+- ++.||.--+.++.|.++|+.+|.+..+..- +
T Consensus 150 ~L~~~dP~~f~~~~~i~V~-~~g-----------~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~~~iDls~ 215 (264)
T PF05096_consen 150 RLYFLDPETFKEVRTIQVT-DNG-----------RPVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVVGWIDLSG 215 (264)
T ss_dssp EEEEE-TTT-SEEEEEE-E-ETT-----------EE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEEEEEE-HH
T ss_pred ceEEECCcccceEEEEEEE-ECC-----------EECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhH
Confidence 9999999874 33333211 111 224455666665 359999999999999999999988765421 1
Q ss_pred ccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEc
Q 001380 758 YERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNL 802 (1089)
Q Consensus 758 ~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~ 802 (1089)
-.............-.-.+|||.+++++++||+--.=..++.+.+
T Consensus 216 L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l 260 (264)
T PF05096_consen 216 LRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKL 260 (264)
T ss_dssp HHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEE
T ss_pred hhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEE
Confidence 110000000001123346899999999999999765566766654
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.028 Score=58.10 Aligned_cols=233 Identities=12% Similarity=0.076 Sum_probs=144.1
Q ss_pred eEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEE
Q 001380 614 RLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVR 692 (1089)
Q Consensus 614 ~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~ 692 (1089)
-+.++-...|.|..+... |.-.++|.... .....|.+.|++..|-+ .++..||.+|+.++.-.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~d--------------sqVNrLeiTpdk~~LAa--a~~qhvRlyD~~S~np~ 74 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPD--------------SQVNRLEITPDKKDLAA--AGNQHVRLYDLNSNNPN 74 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCc--------------cceeeEEEcCCcchhhh--ccCCeeEEEEccCCCCC
Confidence 466777888999999765 88888887652 25678999999884444 45888999998765433
Q ss_pred EEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccc
Q 001380 693 TLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSF 772 (1089)
Q Consensus 693 ~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~ 772 (1089)
.++..- ..-.+-..|.|..+|..+| +....+.+..||...-.+.+.- .+
T Consensus 75 Pv~t~e--------------~h~kNVtaVgF~~dgrWMy-TgseDgt~kIWdlR~~~~qR~~----------------~~ 123 (311)
T KOG0315|consen 75 PVATFE--------------GHTKNVTAVGFQCDGRWMY-TGSEDGTVKIWDLRSLSCQRNY----------------QH 123 (311)
T ss_pred ceeEEe--------------ccCCceEEEEEeecCeEEE-ecCCCceEEEEeccCcccchhc----------------cC
Confidence 332110 0112567788888886555 4445666777776553333221 11
Q ss_pred cC-CceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeE-EEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcE
Q 001380 773 AQ-PSGISLSPDFMEIYVADSESSSIRALNLKTGGSR-LLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQI 850 (1089)
Q Consensus 773 ~~-P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~-~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~l 850 (1089)
.. -+.+.++|.-..|++.|. ++.|+++|+....-. .+.. + . ...-..+++.+||..
T Consensus 124 ~spVn~vvlhpnQteLis~dq-sg~irvWDl~~~~c~~~liP------e-------~--------~~~i~sl~v~~dgsm 181 (311)
T KOG0315|consen 124 NSPVNTVVLHPNQTELISGDQ-SGNIRVWDLGENSCTHELIP------E-------D--------DTSIQSLTVMPDGSM 181 (311)
T ss_pred CCCcceEEecCCcceEEeecC-CCcEEEEEccCCccccccCC------C-------C--------CcceeeEEEcCCCcE
Confidence 11 357888887669999985 688999998754221 1110 0 0 123457888899988
Q ss_pred EEEeCCCCEEEEEeCCCC-eEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 851 YVADSYNHKIKKLDPASN-RVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 851 yVaD~~n~~I~~~d~~~~-~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
.+|-...++.++.+.-++ ..+.+...-.. .+.-..-.-..+.++++.+++.+..+.+.+++.++-
T Consensus 182 l~a~nnkG~cyvW~l~~~~~~s~l~P~~k~--------~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 182 LAAANNKGNCYVWRLLNHQTASELEPVHKF--------QAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred EEEecCCccEEEEEccCCCccccceEhhhe--------ecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 888777777777765332 22222211000 001111222346788888888888999999988774
|
|
| >PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00029 Score=88.51 Aligned_cols=115 Identities=17% Similarity=0.156 Sum_probs=81.2
Q ss_pred CCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcE
Q 001380 163 SGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSEC 242 (1089)
Q Consensus 163 ~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~ 242 (1089)
..+++||+.+.+++|+++|++++++|+.+...++.+.+++|+. .+++ ..| +--..++++++ ...++
T Consensus 566 ~d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~lgi~-~~~~----------~~p--~~K~~~v~~l~-~~~~v 631 (741)
T PRK11033 566 QDTLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGID-FRAG----------LLP--EDKVKAVTELN-QHAPL 631 (741)
T ss_pred ecCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC-eecC----------CCH--HHHHHHHHHHh-cCCCE
Confidence 3477999999999999999999999999999999999999995 3221 122 22223455555 34689
Q ss_pred EEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEe--cCcccCCHHHHHhc
Q 001380 243 IVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIR--KEIGSVSLNDILTG 297 (1089)
Q Consensus 243 v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi--~dl~el~i~~ll~~ 297 (1089)
+||||+.||..+.+.++ ++|..|...+...+ .+|.++ +++..| .+++..
T Consensus 632 ~mvGDgiNDapAl~~A~---vgia~g~~~~~a~~-~adivl~~~~l~~l--~~~i~~ 682 (741)
T PRK11033 632 AMVGDGINDAPAMKAAS---IGIAMGSGTDVALE-TADAALTHNRLRGL--AQMIEL 682 (741)
T ss_pred EEEECCHHhHHHHHhCC---eeEEecCCCHHHHH-hCCEEEecCCHHHH--HHHHHH
Confidence 99999999999999999 66666543333222 255554 455554 444443
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.063 Score=58.79 Aligned_cols=255 Identities=13% Similarity=0.150 Sum_probs=141.6
Q ss_pred ceEEEeecCCe-EEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC----C
Q 001380 604 GKLAIDILNNR-LFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT----E 677 (1089)
Q Consensus 604 ~~vavd~~~g~-L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~----~ 677 (1089)
.+++++|.... +.++-.-..-.+++|.. |+....+...... .|+ ---+++++|+.||.+.+ +
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR----------HFy--GHg~fs~dG~~LytTEnd~~~g 75 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR----------HFY--GHGVFSPDGRLLYTTENDYETG 75 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC----------EEe--cCEEEcCCCCEEEEeccccCCC
Confidence 45666663333 33444444456677776 5555454433111 122 23357889999999954 4
Q ss_pred CCEEEEEECCCC--eEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEE-----EEEECCC--C
Q 001380 678 NHALREIDFVND--TVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQI-----WEHSTVD--G 748 (1089)
Q Consensus 678 n~~I~~~d~~~g--~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I-----~~~~~~~--g 748 (1089)
.+.|-++|...+ ++..+...|. .|+.|.+.|+|..|.|++.|-..- .++|+++ .
T Consensus 76 ~G~IgVyd~~~~~~ri~E~~s~GI-----------------GPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~p 138 (305)
T PF07433_consen 76 RGVIGVYDAARGYRRIGEFPSHGI-----------------GPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQP 138 (305)
T ss_pred cEEEEEEECcCCcEEEeEecCCCc-----------------ChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCC
Confidence 568889998733 3334444332 699999999999999998773211 1222222 1
Q ss_pred eEEEE-eCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCe-------EEEEEcCCCCeEEEecCCCCCCCC
Q 001380 749 VTRAF-SGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSS-------IRALNLKTGGSRLLAGGDPIFPDN 820 (1089)
Q Consensus 749 ~~~~~-~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~-------I~~~~~~~~~~~~~~g~~~~~~~~ 820 (1089)
.+..+ ..+|.....-- .+....-..-..|+++++| .++++....+. |..++.. +..+.+
T Consensus 139 sL~~ld~~sG~ll~q~~-Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g-~~~~~~---------- 205 (305)
T PF07433_consen 139 SLVYLDARSGALLEQVE-LPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRG-GALRLL---------- 205 (305)
T ss_pred ceEEEecCCCceeeeee-cCccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCC-Ccceec----------
Confidence 22222 22221110000 0000111134578888887 77776543321 1111111 111111
Q ss_pred ccccCCCCCccccccc-cCceEEEEccCCc-EEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEE
Q 001380 821 LFKFGDRDGMGSEVLL-QHPLGVYCAKNGQ-IYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGII 898 (1089)
Q Consensus 821 l~~~g~~dg~~~~~~l-~~P~gva~~~~G~-lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~ 898 (1089)
..... ....| ++--+|+++.+|. +.++-...+++..+|.+++.+.... .+..-.|++
T Consensus 206 --~~p~~----~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~---------------~l~D~cGva 264 (305)
T PF07433_consen 206 --PAPEE----QWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV---------------PLPDACGVA 264 (305)
T ss_pred --cCChH----HHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc---------------ccCceeeee
Confidence 11100 01122 3456799998885 7788888999999998888776654 355567888
Q ss_pred EccCCcEEEEECCCCEEEEEeCCCC
Q 001380 899 EAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 899 vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
...++ |++.++.+.+..++..+.
T Consensus 265 ~~~~~--f~~ssG~G~~~~~~~~~~ 287 (305)
T PF07433_consen 265 PTDDG--FLVSSGQGQLIRLSPDGP 287 (305)
T ss_pred ecCCc--eEEeCCCccEEEccCccc
Confidence 88776 777777888777766554
|
|
| >PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=8.5e-05 Score=65.68 Aligned_cols=43 Identities=23% Similarity=0.417 Sum_probs=30.1
Q ss_pred ccCCCEEEEEEecCCCcchhhhhhhH---HHHHHHcCCCCEEEEEEe
Q 001380 450 DLKGKVVVLDFWTYCCINCMHVLPDL---EFLEKKYKDMPFTVVGVH 493 (1089)
Q Consensus 450 ~~~gk~vll~Fwa~wC~~C~~~~p~l---~~l~~~~~~~~v~vi~v~ 493 (1089)
.-.||+++|+|++.||++|+.+-..+ .++.+.+. ++++.+-|.
T Consensus 14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~-~~fv~v~vd 59 (82)
T PF13899_consen 14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALN-KNFVLVKVD 59 (82)
T ss_dssp HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHH-HCSEEEEEE
T ss_pred HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHH-CCEEEEEEE
Confidence 34689999999999999999875544 22222222 357788774
|
... |
| >TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00089 Score=71.62 Aligned_cols=40 Identities=5% Similarity=0.039 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHcCC--CCCcEEEEcCChhhHHHHHHcCCeE
Q 001380 223 PAPDIFLSASKILNV--PTSECIVIEDALAGVQAAKAAQMRC 262 (1089)
Q Consensus 223 P~~~~~~~~l~~lgv--~p~~~v~VGD~~~Di~aA~~aG~~~ 262 (1089)
-|...+...++.+++ .++++++|||+.||+.|.+.+|+..
T Consensus 181 sK~~al~~l~~~~~~~~~~~~~i~~GD~~nD~~ml~~ag~~v 222 (225)
T TIGR02461 181 DKGKAIKRLLDLYKLRPGAIESVGLGDSENDFPMFEVVDLAF 222 (225)
T ss_pred CHHHHHHHHHHHhccccCcccEEEEcCCHHHHHHHHhCCCcE
Confidence 345566667777765 6679999999999999999999753
|
Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles. |
| >PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00028 Score=73.58 Aligned_cols=168 Identities=15% Similarity=0.200 Sum_probs=86.2
Q ss_pred eE-EEEecCCcccCCchHHHHHHHHHHHHcCCC--CCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 001380 80 SA-VLFDMDGVLCNSEEPSRRAAVDVFAEMGVE--VTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLD 156 (1089)
Q Consensus 80 k~-ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1089)
+. |.+||||||+|....+...++ +.++.. ++.+++..+. ....+.. ...+..+.+.+.+.+
T Consensus 2 ~i~I~iDiDgVLad~~~~~~~~~n---~~~~~~~~~~~~~~~~~~------~~~~~g~-------~~~e~~~~~~~~~~~ 65 (191)
T PF06941_consen 2 KIRIAIDIDGVLADFNSAFIEWFN---EEFGKNPELTPEDITGYW------DWEKWGI-------TEPEFYEKLWRFYEE 65 (191)
T ss_dssp -EEEEEESBTTTB-HHHHHHHHHH---HHTTTS----GGGGTSSS------HHHHHHH-------HSTTHHHHHHHHHTS
T ss_pred CcEEEEECCCCCcccHHHHHHHHH---HHcCCCCCCCHHHhhhhh------HHHHhCC-------CCHHHHHHHHHHHhC
Confidence 45 899999999997654333333 346665 5555544211 0111100 001122222222211
Q ss_pred -HhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCCh-------HhHHHHHHHC-CCCCCCccEEEEcCCccCCCCCHHH
Q 001380 157 -KYAKPNSGIGFPGALELINQCKSKGLKVAVASSADR-------IKVDANLAAA-GLPVSMFDAIVSADAFENLKPAPDI 227 (1089)
Q Consensus 157 -~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~-------~~~~~~l~~~-gl~~~~fd~i~~~~~~~~~KP~~~~ 227 (1089)
.+-. ..+++||+.++|+.|.+.|..+.++|.... +.....+++. +.- .+-+.+++.+ |-
T Consensus 66 ~~~f~--~l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i-~~~~~~~~~~-----K~---- 133 (191)
T PF06941_consen 66 PGFFS--NLPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFI-PYDNLIFTGD-----KT---- 133 (191)
T ss_dssp TTTTT--T--B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHH-HHCCEEEESS-----GG----
T ss_pred hhhhc--CCCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCC-chheEEEecC-----CC----
Confidence 1111 337899999999999999977777776432 2344555554 321 2224455432 11
Q ss_pred HHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccC
Q 001380 228 FLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 228 ~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el 289 (1089)
.++.+ ++|.|++..+..+...|+..+++....++... .-.-+.+-.|+
T Consensus 134 ------~v~~D----vlIDD~~~n~~~~~~~g~~~iLfd~p~Nr~~~----~~~Rv~~W~ei 181 (191)
T PF06941_consen 134 ------LVGGD----VLIDDRPHNLEQFANAGIPVILFDQPYNRDES----NFPRVNNWEEI 181 (191)
T ss_dssp ------GC--S----EEEESSSHHHSS-SSESSEEEEE--GGGTT------TSEEE-STTSH
T ss_pred ------eEecc----EEecCChHHHHhccCCCceEEEEcCCCCCCCC----CCccCCCHHHH
Confidence 12332 89999999999999999999999876533222 33455677666
|
5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A .... |
| >COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00014 Score=88.91 Aligned_cols=117 Identities=19% Similarity=0.269 Sum_probs=83.6
Q ss_pred CCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcE
Q 001380 163 SGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSEC 242 (1089)
Q Consensus 163 ~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~ 242 (1089)
...+.|++.+.++.||++|+++.++|+.++...+.+.+++|++ +++.. -+| +--.+..+++.-.-+.+
T Consensus 535 ~D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~lGId-~v~Ae---------llP--edK~~~V~~l~~~g~~V 602 (713)
T COG2217 535 ADELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKELGID-EVRAE---------LLP--EDKAEIVRELQAEGRKV 602 (713)
T ss_pred eCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcChH-hhecc---------CCc--HHHHHHHHHHHhcCCEE
Confidence 4477999999999999999999999999999999999999996 44221 222 33345556665444789
Q ss_pred EEEcCChhhHHHHHHcCCeEEEEcCCC-CHHHHhhcCCcEEecCcccCCHHHHHh
Q 001380 243 IVIEDALAGVQAAKAAQMRCIAVTTTL-SEERLKEASPSLIRKEIGSVSLNDILT 296 (1089)
Q Consensus 243 v~VGD~~~Di~aA~~aG~~~i~V~~g~-~~~~l~~~~~d~vi~dl~el~i~~ll~ 296 (1089)
.||||+.||--+...|. ++|..|. +.-..+.+..-.+-+|+..+ ...+.
T Consensus 603 amVGDGINDAPALA~Ad---VGiAmG~GtDvA~eaADvvL~~~dL~~v--~~ai~ 652 (713)
T COG2217 603 AMVGDGINDAPALAAAD---VGIAMGSGTDVAIEAADVVLMRDDLSAV--PEAID 652 (713)
T ss_pred EEEeCCchhHHHHhhcC---eeEeecCCcHHHHHhCCEEEecCCHHHH--HHHHH
Confidence 99999999999998887 6666665 33333333333344456555 44443
|
|
| >cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00021 Score=58.89 Aligned_cols=63 Identities=24% Similarity=0.390 Sum_probs=46.5
Q ss_pred EEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhCCCce
Q 001380 457 VLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSW 536 (1089)
Q Consensus 457 ll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~ 536 (1089)
|+.||++||++|....+.+.++ ++...++.++.++... ..+.... ...+++..+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~-------------------~~~~~~~~~ 54 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDE-----DPALEKE-------------------LKRYGVGGV 54 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCC-----ChHHhhH-------------------HHhCCCccc
Confidence 5789999999999999999998 3444578888886521 1111100 467889999
Q ss_pred eEEEEECCC
Q 001380 537 PTFAVVGPN 545 (1089)
Q Consensus 537 Pt~~lid~~ 545 (1089)
|++++++++
T Consensus 55 P~~~~~~~~ 63 (69)
T cd01659 55 PTLVVFGPG 63 (69)
T ss_pred cEEEEEeCC
Confidence 999999766
|
Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. |
| >PRK10187 trehalose-6-phosphate phosphatase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00065 Score=74.65 Aligned_cols=69 Identities=10% Similarity=-0.062 Sum_probs=53.7
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHc---CCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhc
Q 001380 221 LKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAA---QMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTG 297 (1089)
Q Consensus 221 ~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~a---G~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~ 297 (1089)
+--|...+.++++.+|+..++++++||+.||+.|-+.+ +-.+|.|..+. ..+.+.+++..++ .+||..
T Consensus 172 g~~Kg~al~~ll~~~~~~~~~v~~~GD~~nD~~mf~~~~~~~g~~vavg~a~-------~~A~~~l~~~~~v--~~~L~~ 242 (266)
T PRK10187 172 GTNKGEAIAAFMQEAPFAGRTPVFVGDDLTDEAGFAVVNRLGGISVKVGTGA-------TQASWRLAGVPDV--WSWLEM 242 (266)
T ss_pred CCCHHHHHHHHHHhcCCCCCeEEEEcCCccHHHHHHHHHhcCCeEEEECCCC-------CcCeEeCCCHHHH--HHHHHH
Confidence 45677889999999999999999999999999998877 33445553321 3578888998887 777776
Q ss_pred c
Q 001380 298 G 298 (1089)
Q Consensus 298 ~ 298 (1089)
+
T Consensus 243 l 243 (266)
T PRK10187 243 I 243 (266)
T ss_pred H
Confidence 6
|
|
| >PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25) | Back alignment and domain information |
|---|
Probab=97.53 E-value=6.7e-05 Score=80.09 Aligned_cols=87 Identities=29% Similarity=0.412 Sum_probs=60.3
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCC---ChHhHHHHHHHCCCCCCCccEEEE-cCCccC----CCCCHHHHHHHHHH-c
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSA---DRIKVDANLAAAGLPVSMFDAIVS-ADAFEN----LKPAPDIFLSASKI-L 235 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~---~~~~~~~~l~~~gl~~~~fd~i~~-~~~~~~----~KP~~~~~~~~l~~-l 235 (1089)
+.+||+.+|+..++++|+.|+++||+ .++.....|.+.|+. . .+.++- .+.... ..-|.+-...+.++ +
T Consensus 115 ~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~-~-~~~l~lr~~~~~~~~~~~~yK~~~r~~i~~~Gy 192 (229)
T PF03767_consen 115 PAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFP-G-WDHLILRPDKDPSKKSAVEYKSERRKEIEKKGY 192 (229)
T ss_dssp EEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTS-T-BSCGEEEEESSTSS------SHHHHHHHHHTTE
T ss_pred cccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCC-c-cchhccccccccccccccccchHHHHHHHHcCC
Confidence 67999999999999999999999996 456777888999985 3 244332 222111 11244445555555 4
Q ss_pred CCCCCcEEEEcCChhhHHHHHH
Q 001380 236 NVPTSECIVIEDALAGVQAAKA 257 (1089)
Q Consensus 236 gv~p~~~v~VGD~~~Di~aA~~ 257 (1089)
.+ +++|||.++|+.+++.
T Consensus 193 ~I----i~~iGD~~~D~~~~~~ 210 (229)
T PF03767_consen 193 RI----IANIGDQLSDFSGAKT 210 (229)
T ss_dssp EE----EEEEESSGGGCHCTHH
T ss_pred cE----EEEeCCCHHHhhcccc
Confidence 44 8999999999998443
|
The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A .... |
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.048 Score=65.86 Aligned_cols=206 Identities=8% Similarity=0.054 Sum_probs=120.3
Q ss_pred CcceeEEeeC-CCEEEEEECCCCEEEEEECCCCe--EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEE
Q 001380 658 RPQGLAYNAK-KNLLYVADTENHALREIDFVNDT--VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAM 734 (1089)
Q Consensus 658 ~P~gla~d~~-g~~lyVaD~~n~~I~~~d~~~g~--v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad 734 (1089)
....++++|. ++ ++++-..++.|+.++..++. +..+...-. . ...+-.....|+|+|.+..++++.
T Consensus 76 ~V~~lafsP~~~~-lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~---~-------L~gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 76 SILDLQFNPCFSE-ILASGSEDLTIRVWEIPHNDESVKEIKDPQC---I-------LKGHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred CEEEEEEcCCCCC-EEEEEeCCCeEEEEECCCCCccccccccceE---E-------eecCCCcEEEEEECCCCCeEEEEE
Confidence 4578899986 56 66666678899999986432 111100000 0 000112467899999887777777
Q ss_pred CCCcEEEEEECCCCeEEE-EeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeE-EEec
Q 001380 735 AGQHQIWEHSTVDGVTRA-FSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR-LLAG 812 (1089)
Q Consensus 735 ~~~~~I~~~~~~~g~~~~-~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~-~~~g 812 (1089)
...+.|..||..++.... +.. -.....++++++| .++++.+..+.|+.+++.++... .+.+
T Consensus 145 S~DgtIrIWDl~tg~~~~~i~~----------------~~~V~SlswspdG-~lLat~s~D~~IrIwD~Rsg~~i~tl~g 207 (568)
T PTZ00420 145 GFDSFVNIWDIENEKRAFQINM----------------PKKLSSLKWNIKG-NLLSGTCVGKHMHIIDPRKQEIASSFHI 207 (568)
T ss_pred eCCCeEEEEECCCCcEEEEEec----------------CCcEEEEEECCCC-CEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 778899999988775432 211 0135689999998 56676667789999999876543 2222
Q ss_pred CCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCC----CEEEEEeCCC--CeEEEEeccCCCCCCCCcc
Q 001380 813 GDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYN----HKIKKLDPAS--NRVSTLAGIGKAGFKDGAA 886 (1089)
Q Consensus 813 ~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n----~~I~~~d~~~--~~v~t~~g~g~~g~~~g~~ 886 (1089)
. .+.... +...+ ..+.+++..+++-..+ +.|+.+|..+ ..+.++....
T Consensus 208 H-------------~g~~~s--~~v~~--~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~--------- 261 (568)
T PTZ00420 208 H-------------DGGKNT--KNIWI--DGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN--------- 261 (568)
T ss_pred c-------------cCCcee--EEEEe--eeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC---------
Confidence 1 111000 00001 1223566555543222 4688888763 2333332111
Q ss_pred cccccCCCceE--EEcc-CCcEEEEECCCCEEEEEeCCCC
Q 001380 887 LAAQLSEPAGI--IEAQ-NGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 887 ~~~~l~~P~gi--~vd~-~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
.+..+ ..|+ +|.+|++..+++.|+.+++..+
T Consensus 262 ------~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 262 ------ASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred ------CccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 11221 2343 5789999999999999999765
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.1 Score=57.04 Aligned_cols=204 Identities=13% Similarity=0.087 Sum_probs=130.8
Q ss_pred CceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEE
Q 001380 603 PGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHAL 681 (1089)
Q Consensus 603 P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I 681 (1089)
-..++++| +.+|.++..+..+=+.++.. |.....+.+. -.+...+.++.+|.+|--.| -.+.|
T Consensus 67 vFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~~~eltgH--------------KDSVt~~~FshdgtlLATGd-msG~v 130 (399)
T KOG0296|consen 67 VFAVSLHP-NNNLVATGGGDDLAFLWDISTGEFAGELTGH--------------KDSVTCCSFSHDGTLLATGD-MSGKV 130 (399)
T ss_pred eEEEEeCC-CCceEEecCCCceEEEEEccCCcceeEecCC--------------CCceEEEEEccCceEEEecC-CCccE
Confidence 44678888 88899999888888888765 6666555443 12557788888887333333 36778
Q ss_pred EEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCC-CeEEEEeCCCccc
Q 001380 682 REIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVD-GVTRAFSGDGYER 760 (1089)
Q Consensus 682 ~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~-g~~~~~~g~g~~~ 760 (1089)
+++..++|......- + ....-.=|.++|.+ .++.+....+.+|.|.... +.+..+.|.+..
T Consensus 131 ~v~~~stg~~~~~~~-~---------------e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~- 192 (399)
T KOG0296|consen 131 LVFKVSTGGEQWKLD-Q---------------EVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALCKVMSGHNSP- 192 (399)
T ss_pred EEEEcccCceEEEee-c---------------ccCceEEEEecccc-cEEEeecCCCcEEEEECCCcceeeEecCCCCC-
Confidence 888877766555431 0 01122336789977 8888888899999999877 788888875421
Q ss_pred cCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCce
Q 001380 761 NLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPL 840 (1089)
Q Consensus 761 ~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~ 840 (1089)
.+.=.+.|+|++++.... +++|+.+++.++......++.. .++. +........-.
T Consensus 193 --------------ct~G~f~pdGKr~~tgy~-dgti~~Wn~ktg~p~~~~~~~e----~~~~------~~~~~~~~~~~ 247 (399)
T KOG0296|consen 193 --------------CTCGEFIPDGKRILTGYD-DGTIIVWNPKTGQPLHKITQAE----GLEL------PCISLNLAGST 247 (399)
T ss_pred --------------cccccccCCCceEEEEec-CceEEEEecCCCceeEEecccc----cCcC------Cccccccccce
Confidence 111235678877776654 7999999999887654444221 0000 01111122223
Q ss_pred EEEEccCCcEEEEeCCCCEEEEEeC
Q 001380 841 GVYCAKNGQIYVADSYNHKIKKLDP 865 (1089)
Q Consensus 841 gva~~~~G~lyVaD~~n~~I~~~d~ 865 (1089)
-++-..+|..|+.....+++...+.
T Consensus 248 ~~~g~~e~~~~~~~~~sgKVv~~~n 272 (399)
T KOG0296|consen 248 LTKGNSEGVACGVNNGSGKVVNCNN 272 (399)
T ss_pred eEeccCCccEEEEccccceEEEecC
Confidence 3445567888888888888877653
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.014 Score=58.77 Aligned_cols=203 Identities=14% Similarity=0.117 Sum_probs=116.1
Q ss_pred CcceeEEeeCCCEEEEEEC--CCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC
Q 001380 658 RPQGLAYNAKKNLLYVADT--ENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA 735 (1089)
Q Consensus 658 ~P~gla~d~~g~~lyVaD~--~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~ 735 (1089)
.-||+.++ +| .+|.+-. ++.+|++.|+++|++..-....... ..--|++. .|+.+|.-.+
T Consensus 47 fTQGL~~~-~g-~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~--------------~FgEGit~--~gd~~y~LTw 108 (262)
T COG3823 47 FTQGLEYL-DG-HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDT--------------VFGEGITK--LGDYFYQLTW 108 (262)
T ss_pred hhcceeee-CC-EEEEeccccccceeEEEeccCceEEEEeecCCcc--------------ccccceee--ccceEEEEEe
Confidence 34899887 34 5777644 5779999999987765432111000 01123333 3578888888
Q ss_pred CCcEEEEEECCCCeE-EEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCC----CeEEE
Q 001380 736 GQHQIWEHSTVDGVT-RAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTG----GSRLL 810 (1089)
Q Consensus 736 ~~~~I~~~~~~~g~~-~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~----~~~~~ 810 (1089)
..+.-++||..+-++ -.+.=.| +-.||+-| +++|+.+| ++..++.-+|++= .+.+-
T Consensus 109 ~egvaf~~d~~t~~~lg~~~y~G----------------eGWgLt~d--~~~Limsd-GsatL~frdP~tfa~~~~v~VT 169 (262)
T COG3823 109 KEGVAFKYDADTLEELGRFSYEG----------------EGWGLTSD--DKNLIMSD-GSATLQFRDPKTFAELDTVQVT 169 (262)
T ss_pred ccceeEEEChHHhhhhcccccCC----------------cceeeecC--CcceEeeC-CceEEEecCHHHhhhcceEEEE
Confidence 777777888654321 1221111 22466554 44777776 5678887777641 11111
Q ss_pred ecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccc
Q 001380 811 AGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQ 890 (1089)
Q Consensus 811 ~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~ 890 (1089)
..|.|. .+|+ -+-+ -+|.+|-.-++..+|.+++|++|+|..+.....--..-+ .....
T Consensus 170 ~~g~pv-----------------~~LN---ELE~-VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~-~~~~~ 227 (262)
T COG3823 170 DDGVPV-----------------SKLN---ELEW-VDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELN-LDKSN 227 (262)
T ss_pred ECCeec-----------------cccc---ceee-eccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcC-ccccc
Confidence 111110 0111 1222 278999988999999999999999988764311100000 11124
Q ss_pred cCCCceEEEccCC-cEEEEECCCCEEEEEe
Q 001380 891 LSEPAGIIEAQNG-NLFIADTNNNIIRYLD 919 (1089)
Q Consensus 891 l~~P~gi~vd~~G-~lyVad~~n~~I~~~~ 919 (1089)
.+-++|||.++++ ++|++.-.=-.+..+.
T Consensus 228 ~nvlNGIA~~~~~~r~~iTGK~wp~lfEVk 257 (262)
T COG3823 228 DNVLNGIAHDPQQDRFLITGKLWPLLFEVK 257 (262)
T ss_pred cccccceeecCcCCeEEEecCcCceeEEEE
Confidence 6789999999866 7999865434444333
|
|
| >TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.002 Score=70.67 Aligned_cols=74 Identities=14% Similarity=0.130 Sum_probs=53.7
Q ss_pred cCCCCCHHHHHHHHHHcCCC--CCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCH---HHHhhc--CCcEEecCcccCCH
Q 001380 219 ENLKPAPDIFLSASKILNVP--TSECIVIEDALAGVQAAKAAQMRCIAVTTTLSE---ERLKEA--SPSLIRKEIGSVSL 291 (1089)
Q Consensus 219 ~~~KP~~~~~~~~l~~lgv~--p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~---~~l~~~--~~d~vi~dl~el~i 291 (1089)
..+-.|...++.+++++|++ .+++++|||+.||+.|.+.+|. .|..+... +++++. .+++|..+-.+-.+
T Consensus 172 ~~~~~Kg~ai~~l~~~~~i~~~~~~~~a~GD~~ND~~Ml~~ag~---~vam~Na~~~~~~lk~~~~a~~~vt~~~~~dGv 248 (256)
T TIGR01486 172 GAGSDKGKAANALKQFYNQPGGAIKVVGLGDSPNDLPLLEVVDL---AVVVPGPNGPNVSLKPGDPGSFLLTPAPGPEGW 248 (256)
T ss_pred cCCCCHHHHHHHHHHHHhhcCCCceEEEEcCCHhhHHHHHHCCE---EEEeCCCCCCccccCccCCCcEEEcCCCCcHHH
Confidence 34667788899999999999 9999999999999999999994 34333322 456554 23477776655544
Q ss_pred HHHH
Q 001380 292 NDIL 295 (1089)
Q Consensus 292 ~~ll 295 (1089)
...|
T Consensus 249 a~~l 252 (256)
T TIGR01486 249 REAL 252 (256)
T ss_pred HHHH
Confidence 4444
|
This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta |
| >KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.011 Score=76.63 Aligned_cols=201 Identities=17% Similarity=0.244 Sum_probs=148.9
Q ss_pred CcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC
Q 001380 658 RPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ 737 (1089)
Q Consensus 658 ~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~ 737 (1089)
....+.++..++.+|++|.....|......+.....+-+.| +..|.++++|--++.+|++|.+.
T Consensus 438 ~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~~~g----------------~~~~~~lavD~~~~~~y~tDe~~ 501 (877)
T KOG1215|consen 438 NAVALDFDVLNNRIYWADLSDEKICRASQDGSSECELCGDG----------------LCIPEGLAVDWIGDNIYWTDEGN 501 (877)
T ss_pred cceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEeccC----------------ccccCcEEEEeccCCceecccCC
Confidence 55667777777789999999999988887766655544444 34788999999999999999999
Q ss_pred cEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCC-CeEEEEEcCCCCeEEEecCCCC
Q 001380 738 HQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSES-SSIRALNLKTGGSRLLAGGDPI 816 (1089)
Q Consensus 738 ~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~-~~I~~~~~~~~~~~~~~g~~~~ 816 (1089)
..+...+..+.....+.. ..+..|..++++|..+.+|++|.+. .+|.+-.+++.....+...
T Consensus 502 ~~i~v~~~~g~~~~vl~~--------------~~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~~--- 564 (877)
T KOG1215|consen 502 CLIEVADLDGSSRKVLVS--------------KDLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLVTN--- 564 (877)
T ss_pred ceeEEEEccCCceeEEEe--------------cCCCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceEEEeC---
Confidence 999888866555333432 2235799999999888999999883 4576766665444444321
Q ss_pred CCCCccccCCCCCccccccccCceEEEEcc-CCcEEEEeCCCC-EEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCC
Q 001380 817 FPDNLFKFGDRDGMGSEVLLQHPLGVYCAK-NGQIYVADSYNH-KIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEP 894 (1089)
Q Consensus 817 ~~~~l~~~g~~dg~~~~~~l~~P~gva~~~-~G~lyVaD~~n~-~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P 894 (1089)
.+..|.|+++|. +..+|++|...+ .|.+++-+++... +.. ...+.+|
T Consensus 565 ------------------~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~-~~~------------~~~~~~p 613 (877)
T KOG1215|consen 565 ------------------GILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNRR-VVD------------SEDLPHP 613 (877)
T ss_pred ------------------CccCCCcceEEeecceeEEEcccCCcceeeeecCCCceE-Eec------------cccCCCc
Confidence 156899999985 568999999888 7888887665554 211 1257889
Q ss_pred ceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 895 AGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 895 ~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
.++++-. +.+|..|..++.+.+......
T Consensus 614 ~~~~~~~-~~iyw~d~~~~~~~~~~~~~~ 641 (877)
T KOG1215|consen 614 FGLSVFE-DYIYWTDWSNRAISRAEKHKG 641 (877)
T ss_pred eEEEEec-ceeEEeeccccceEeeecccC
Confidence 9999974 579999999987777766555
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.11 Score=60.58 Aligned_cols=237 Identities=17% Similarity=0.210 Sum_probs=128.7
Q ss_pred EEEeecCCeEEEEeCCCCEEEEEeC-CCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEE
Q 001380 606 LAIDILNNRLFISDSNHNRIVVTDL-DGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREI 684 (1089)
Q Consensus 606 vavd~~~g~L~vsd~~~~~I~~~~~-~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~ 684 (1089)
.+++ ++++|+.+. .+.|+.+|. +|+.+......+. + -.+++++ ++.+||.+ .++.|+.+
T Consensus 61 p~v~--~~~v~v~~~-~g~v~a~d~~tG~~~W~~~~~~~------------~--~~~p~v~--~~~v~v~~-~~g~l~al 120 (377)
T TIGR03300 61 PAVA--GGKVYAADA-DGTVVALDAETGKRLWRVDLDER------------L--SGGVGAD--GGLVFVGT-EKGEVIAL 120 (377)
T ss_pred eEEE--CCEEEEECC-CCeEEEEEccCCcEeeeecCCCC------------c--ccceEEc--CCEEEEEc-CCCEEEEE
Confidence 3454 788998886 478999995 6988876544311 0 1234453 55588876 46789999
Q ss_pred ECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCC
Q 001380 685 DFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNG 764 (1089)
Q Consensus 685 d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g 764 (1089)
|.++|.+.--...+. .....| ++. ++.+|+.. ..+.|+.+|..+|.+..-.......
T Consensus 121 d~~tG~~~W~~~~~~-------------~~~~~p---~v~--~~~v~v~~-~~g~l~a~d~~tG~~~W~~~~~~~~---- 177 (377)
T TIGR03300 121 DAEDGKELWRAKLSS-------------EVLSPP---LVA--NGLVVVRT-NDGRLTALDAATGERLWTYSRVTPA---- 177 (377)
T ss_pred ECCCCcEeeeeccCc-------------eeecCC---EEE--CCEEEEEC-CCCeEEEEEcCCCceeeEEccCCCc----
Confidence 998777654332211 011223 222 35777754 4678999999888764332111000
Q ss_pred CCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEec-CCCCCCCCccccCCCCCccccccccCceEEE
Q 001380 765 SSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAG-GDPIFPDNLFKFGDRDGMGSEVLLQHPLGVY 843 (1089)
Q Consensus 765 ~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g-~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva 843 (1089)
..+......++. ++ .+|+.. .++.+..+++.+|....-.. ..+ .|..+..........| .
T Consensus 178 -----~~~~~~~sp~~~-~~-~v~~~~-~~g~v~ald~~tG~~~W~~~~~~~--------~g~~~~~~~~~~~~~p---~ 238 (377)
T TIGR03300 178 -----LTLRGSASPVIA-DG-GVLVGF-AGGKLVALDLQTGQPLWEQRVALP--------KGRTELERLVDVDGDP---V 238 (377)
T ss_pred -----eeecCCCCCEEE-CC-EEEEEC-CCCEEEEEEccCCCEeeeeccccC--------CCCCchhhhhccCCcc---E
Confidence 000000111222 23 676654 45788999987765432110 000 0000000000001112 1
Q ss_pred EccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 844 CAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 844 ~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
+ .++.+|+++. ++.++.+|+++|.+.--.. .......+++ +++||+.+ .++.|..++..++
T Consensus 239 ~-~~~~vy~~~~-~g~l~a~d~~tG~~~W~~~---------------~~~~~~p~~~-~~~vyv~~-~~G~l~~~d~~tG 299 (377)
T TIGR03300 239 V-DGGQVYAVSY-QGRVAALDLRSGRVLWKRD---------------ASSYQGPAVD-DNRLYVTD-ADGVVVALDRRSG 299 (377)
T ss_pred E-ECCEEEEEEc-CCEEEEEECCCCcEEEeec---------------cCCccCceEe-CCEEEEEC-CCCeEEEEECCCC
Confidence 2 2678999875 5789999998775432211 1123344554 57899886 5689999999765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.023 Score=62.11 Aligned_cols=210 Identities=17% Similarity=0.126 Sum_probs=123.1
Q ss_pred EEEeecCCeEEEEe----CCCCEEEEEeCCCCEE--EEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCC
Q 001380 606 LAIDILNNRLFISD----SNHNRIVVTDLDGNFI--VQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENH 679 (1089)
Q Consensus 606 vavd~~~g~L~vsd----~~~~~I~~~~~~g~~~--~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~ 679 (1089)
-++++++..||.+. ++.+.|-++|....+. ..+...| ..|+.|.+.++|..|.||+.+-+
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~G--------------IGPHel~l~pDG~tLvVANGGI~ 121 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHG--------------IGPHELLLMPDGETLVVANGGIE 121 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCC--------------cChhhEEEcCCCCEEEEEcCCCc
Confidence 36777677788884 4568899999984433 2444332 26999999999988999976421
Q ss_pred EE-----EEEECCC--CeEEEE-ecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcE-------EEEEE
Q 001380 680 AL-----REIDFVN--DTVRTL-AGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQ-------IWEHS 744 (1089)
Q Consensus 680 ~I-----~~~d~~~--g~v~~~-ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~-------I~~~~ 744 (1089)
.= .++|+++ -.+..+ ..+|.--.. -.....-...|-..|+++.+| .+++++...+. |..+.
T Consensus 122 Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q---~~Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~ 197 (305)
T PF07433_consen 122 THPDSGRAKLNLDTMQPSLVYLDARSGALLEQ---VELPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHR 197 (305)
T ss_pred cCcccCceecChhhcCCceEEEecCCCceeee---eecCccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEc
Confidence 11 1333332 122222 222211000 000011233578999999987 88888755432 22221
Q ss_pred CCCCeEEEEeCCCccccCCCCCCCCcccc-CCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccc
Q 001380 745 TVDGVTRAFSGDGYERNLNGSSSLNTSFA-QPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFK 823 (1089)
Q Consensus 745 ~~~g~~~~~~g~g~~~~~~g~~~~~~~~~-~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~ 823 (1089)
. ++..+.+... ......|. .--.||++.+|+.+.++....+++..++..++......
T Consensus 198 ~-g~~~~~~~~p---------~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~------------ 255 (305)
T PF07433_consen 198 R-GGALRLLPAP---------EEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV------------ 255 (305)
T ss_pred C-CCcceeccCC---------hHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc------------
Confidence 1 1112222111 00011222 24579999999888899999999999988876654221
Q ss_pred cCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCC
Q 001380 824 FGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASN 868 (1089)
Q Consensus 824 ~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~ 868 (1089)
.+.-.-||+...+| |+..++.+++..++..+.
T Consensus 256 -----------~l~D~cGva~~~~~--f~~ssG~G~~~~~~~~~~ 287 (305)
T PF07433_consen 256 -----------PLPDACGVAPTDDG--FLVSSGQGQLIRLSPDGP 287 (305)
T ss_pred -----------ccCceeeeeecCCc--eEEeCCCccEEEccCccc
Confidence 13445678887777 777778888888876543
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0091 Score=67.37 Aligned_cols=225 Identities=13% Similarity=0.139 Sum_probs=142.2
Q ss_pred CCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEE--EEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC
Q 001380 599 PLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIV--QIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT 676 (1089)
Q Consensus 599 ~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~--~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~ 676 (1089)
+-+--..+++|+ .|--|++.+-...|..||..|--.. .+. ...+..-+.-..+.+++.|+.|.|+-
T Consensus 166 gtk~Vsal~~Dp-~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr----------~l~P~E~h~i~sl~ys~Tg~~iLvvs- 233 (641)
T KOG0772|consen 166 GTKIVSALAVDP-SGARFVSGSLDYTVKFWDFQGMDASMRSFR----------QLQPCETHQINSLQYSVTGDQILVVS- 233 (641)
T ss_pred CceEEEEeeecC-CCceeeeccccceEEEEecccccccchhhh----------ccCcccccccceeeecCCCCeEEEEe-
Confidence 334556788998 6667788888889999998875332 111 11122334557888888998666554
Q ss_pred CCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCC--eEEEEe
Q 001380 677 ENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDG--VTRAFS 754 (1089)
Q Consensus 677 ~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g--~~~~~~ 754 (1089)
++...+.+|-++-.+..+.. |.+ +--...-+..++..-+..+|+|.....|++....+.++.|+...- ...+|-
T Consensus 234 g~aqakl~DRdG~~~~e~~K-GDQ---YI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik 309 (641)
T KOG0772|consen 234 GSAQAKLLDRDGFEIVEFSK-GDQ---YIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIK 309 (641)
T ss_pred cCcceeEEccCCceeeeeec-cch---hhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEe
Confidence 56778889987766655542 221 110111122334456678899999999999888777777765543 334443
Q ss_pred CCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccc
Q 001380 755 GDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEV 834 (1089)
Q Consensus 755 g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~ 834 (1089)
..+.. ..-..|.-.++++|| .++.+-...++|+.++..+-.+... ....-.+.+|
T Consensus 310 ~k~~~----------g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~---------~~vk~AH~~g----- 364 (641)
T KOG0772|consen 310 TKPAG----------GKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPV---------MKVKDAHLPG----- 364 (641)
T ss_pred eccCC----------CcccCceeeecCCCc-chhhhcccCCceeeeecCCcccccc---------eEeeeccCCC-----
Confidence 22110 112246678999999 6688888899999998643222211 1111111221
Q ss_pred cccCceEEEEccCCcEEEEeCCCCEEEEEeCC
Q 001380 835 LLQHPLGVYCAKNGQIYVADSYNHKIKKLDPA 866 (1089)
Q Consensus 835 ~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~ 866 (1089)
+.-..|+++.+|+++.+....+.+++.|..
T Consensus 365 --~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 365 --QDITSISFSYDGNYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred --CceeEEEeccccchhhhccCCCceeeeecc
Confidence 245789999999999999999999998864
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.025 Score=61.70 Aligned_cols=255 Identities=14% Similarity=0.188 Sum_probs=156.5
Q ss_pred eEEEeecCCeEEEEeCCCCEEEEEeCCCCEEE-EEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEE
Q 001380 605 KLAIDILNNRLFISDSNHNRIVVTDLDGNFIV-QIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALRE 683 (1089)
Q Consensus 605 ~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~-~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~ 683 (1089)
.+.++| +|...++.+|...+..+|.+.+.-. +..+. -+....|+++|||. ...+..-++.|+.
T Consensus 120 ~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH--------------~~WVlcvawsPDgk-~iASG~~dg~I~l 183 (480)
T KOG0271|consen 120 SVQFSP-TGSRLVTGSGDTTVRLWDLDTETPLFTCKGH--------------KNWVLCVAWSPDGK-KIASGSKDGSIRL 183 (480)
T ss_pred EEEecC-CCceEEecCCCceEEeeccCCCCcceeecCC--------------ccEEEEEEECCCcc-hhhccccCCeEEE
Confidence 466787 8888999999999999999876543 33222 35789999999999 6667777999999
Q ss_pred EECCCCeE--EEEecCCCCCCCCCCCCcccccccCCceeEEEecCC----CEEEEEECCCcEEEEEECCCCeEEEE-eCC
Q 001380 684 IDFVNDTV--RTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPIN----EKVYIAMAGQHQIWEHSTVDGVTRAF-SGD 756 (1089)
Q Consensus 684 ~d~~~g~v--~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g----~~lyvad~~~~~I~~~~~~~g~~~~~-~g~ 756 (1089)
+|+.+|.. +.+.|.- ..-.+++|.|-. .+.+.+....+.|+.||...+++... .|.
T Consensus 184 wdpktg~~~g~~l~gH~-----------------K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgH 246 (480)
T KOG0271|consen 184 WDPKTGQQIGRALRGHK-----------------KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGH 246 (480)
T ss_pred ecCCCCCcccccccCcc-----------------cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccC
Confidence 99876542 3333322 144566665421 25666667788899999887765543 332
Q ss_pred CccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCe-EEEecCC-----------CCCCCCcccc
Q 001380 757 GYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGS-RLLAGGD-----------PIFPDNLFKF 824 (1089)
Q Consensus 757 g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~-~~~~g~~-----------~~~~~~l~~~ 824 (1089)
. +.-..|.+..+| .|| +.+...+|++++...|.. +.+-|.. .....+-|..
T Consensus 247 T---------------~~VTCvrwGG~g-liy-SgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~ 309 (480)
T KOG0271|consen 247 T---------------ASVTCVRWGGEG-LIY-SGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDH 309 (480)
T ss_pred c---------------cceEEEEEcCCc-eEE-ecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccccc
Confidence 1 123466676665 555 455667888887665421 1222210 0000000100
Q ss_pred --------------------------------CCCCCccc---cccc-----------cCceEEEEccCCcEEEEeCCCC
Q 001380 825 --------------------------------GDRDGMGS---EVLL-----------QHPLGVYCAKNGQIYVADSYNH 858 (1089)
Q Consensus 825 --------------------------------g~~dg~~~---~~~l-----------~~P~gva~~~~G~lyVaD~~n~ 858 (1089)
|..|..-. .... +--..|.++|||+...+-+...
T Consensus 310 t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk 389 (480)
T KOG0271|consen 310 TGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDK 389 (480)
T ss_pred ccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeeccc
Confidence 00010000 0000 1124577888887777777777
Q ss_pred EEEEEeCCC-CeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 859 KIKKLDPAS-NRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 859 ~I~~~d~~~-~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
.|+-.|-.+ +++.++-| ....-.-++...|.+|+|+.+...+|.+++..++
T Consensus 390 SVkLW~g~tGk~lasfRG--------------Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 390 SVKLWDGRTGKFLASFRG--------------HVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK 441 (480)
T ss_pred ceeeeeCCCcchhhhhhh--------------ccceeEEEEeccCccEEEEcCCCceEEEEEeeee
Confidence 777777543 34455543 2344566777778899999999999999998776
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.14 Score=56.05 Aligned_cols=262 Identities=11% Similarity=0.115 Sum_probs=150.5
Q ss_pred ceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEE
Q 001380 604 GKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALR 682 (1089)
Q Consensus 604 ~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~ 682 (1089)
..+.++. +|.|..+---.+.|.++..+ |.....+... -..-.-+..+|.+. ++.|....+.|+
T Consensus 110 t~~~Fsh-dgtlLATGdmsG~v~v~~~stg~~~~~~~~e--------------~~dieWl~WHp~a~-illAG~~DGsvW 173 (399)
T KOG0296|consen 110 TCCSFSH-DGTLLATGDMSGKVLVFKVSTGGEQWKLDQE--------------VEDIEWLKWHPRAH-ILLAGSTDGSVW 173 (399)
T ss_pred EEEEEcc-CceEEEecCCCccEEEEEcccCceEEEeecc--------------cCceEEEEeccccc-EEEeecCCCcEE
Confidence 3456665 66666666567888888776 4444454322 11335667788777 788888889999
Q ss_pred EEECCC-CeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCcccc
Q 001380 683 EIDFVN-DTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERN 761 (1089)
Q Consensus 683 ~~d~~~-g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~ 761 (1089)
.+...+ +..+.+.|.+..... =.|.|+|+++..... ++.|++||+.++....-.+.. +.
T Consensus 174 mw~ip~~~~~kv~~Gh~~~ct~-----------------G~f~pdGKr~~tgy~-dgti~~Wn~ktg~p~~~~~~~-e~- 233 (399)
T KOG0296|consen 174 MWQIPSQALCKVMSGHNSPCTC-----------------GEFIPDGKRILTGYD-DGTIIVWNPKTGQPLHKITQA-EG- 233 (399)
T ss_pred EEECCCcceeeEecCCCCCccc-----------------ccccCCCceEEEEec-CceEEEEecCCCceeEEeccc-cc-
Confidence 998877 777778775532211 125677766665544 789999999988544332211 00
Q ss_pred CCCCCCCCccccCCceEEEc--CCCCEEEEEeCCCCeEEEEEcCCCCeEEEecC---------CCC-CCCCccccCCCCC
Q 001380 762 LNGSSSLNTSFAQPSGISLS--PDFMEIYVADSESSSIRALNLKTGGSRLLAGG---------DPI-FPDNLFKFGDRDG 829 (1089)
Q Consensus 762 ~~g~~~~~~~~~~P~glav~--~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~---------~~~-~~~~l~~~g~~dg 829 (1089)
-..+.-.+..-..+.++ .++ ..+++...+++|....-.+ .....+.. .+. .-..|++.|..||
T Consensus 234 ---~~~~~~~~~~~~~~~~~g~~e~-~~~~~~~~sgKVv~~~n~~-~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG 308 (399)
T KOG0296|consen 234 ---LELPCISLNLAGSTLTKGNSEG-VACGVNNGSGKVVNCNNGT-VPELKPSQEELDESVESIPSSSKLPLAACGSVDG 308 (399)
T ss_pred ---CcCCccccccccceeEeccCCc-cEEEEccccceEEEecCCC-Cccccccchhhhhhhhhcccccccchhhcccccc
Confidence 00000111111122222 233 5666665556554443211 11111110 000 1124677888887
Q ss_pred ccc---------cccccCceEE---EEccCCcEEEEeCCCCEEEEEeCCCCeEEE-EeccCCCCCCCCcccccccCCCce
Q 001380 830 MGS---------EVLLQHPLGV---YCAKNGQIYVADSYNHKIKKLDPASNRVST-LAGIGKAGFKDGAALAAQLSEPAG 896 (1089)
Q Consensus 830 ~~~---------~~~l~~P~gv---a~~~~G~lyVaD~~n~~I~~~d~~~~~v~t-~~g~g~~g~~~g~~~~~~l~~P~g 896 (1089)
... ...+.|+.+| .+.++ ....+-..|++|+.+|..+|++.. +.| ....-..
T Consensus 309 ~i~iyD~a~~~~R~~c~he~~V~~l~w~~t-~~l~t~c~~g~v~~wDaRtG~l~~~y~G--------------H~~~Il~ 373 (399)
T KOG0296|consen 309 TIAIYDLAASTLRHICEHEDGVTKLKWLNT-DYLLTACANGKVRQWDARTGQLKFTYTG--------------HQMGILD 373 (399)
T ss_pred eEEEEecccchhheeccCCCceEEEEEcCc-chheeeccCceEEeeeccccceEEEEec--------------CchheeE
Confidence 522 2334566665 34442 333445678999999998777644 443 2334667
Q ss_pred EEEccCCcEEEEECCCCEEEEEeCC
Q 001380 897 IIEAQNGNLFIADTNNNIIRYLDLN 921 (1089)
Q Consensus 897 i~vd~~G~lyVad~~n~~I~~~~~~ 921 (1089)
+++.+++++.|+-+..|..++|...
T Consensus 374 f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 374 FALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEcCCCcEEEEecCCCeEEEEecC
Confidence 8888999999998888888888653
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.1 Score=61.08 Aligned_cols=241 Identities=15% Similarity=0.185 Sum_probs=129.6
Q ss_pred CCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCe
Q 001380 612 NNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDT 690 (1089)
Q Consensus 612 ~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~ 690 (1089)
++++|+.+. ++.++.+|.+ |+.+......+..++.... ....+ -.+++++ ++.+|+.+ .++.|+.+|.++|+
T Consensus 69 ~~~vy~~~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~-~~~~~--~~~~~v~--~~~v~v~~-~~g~l~ald~~tG~ 141 (394)
T PRK11138 69 YNKVYAADR-AGLVKALDADTGKEIWSVDLSEKDGWFSKN-KSALL--SGGVTVA--GGKVYIGS-EKGQVYALNAEDGE 141 (394)
T ss_pred CCEEEEECC-CCeEEEEECCCCcEeeEEcCCCcccccccc-ccccc--ccccEEE--CCEEEEEc-CCCEEEEEECCCCC
Confidence 789999876 4689999974 9888765443211110000 00000 1235554 45589886 46689999988776
Q ss_pred EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCc
Q 001380 691 VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNT 770 (1089)
Q Consensus 691 v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~ 770 (1089)
+.--...+. ...++| ++. ++.+|+.. +++.|+.+|..+|++..-......... ..
T Consensus 142 ~~W~~~~~~-------------~~~ssP---~v~--~~~v~v~~-~~g~l~ald~~tG~~~W~~~~~~~~~~------~~ 196 (394)
T PRK11138 142 VAWQTKVAG-------------EALSRP---VVS--DGLVLVHT-SNGMLQALNESDGAVKWTVNLDVPSLT------LR 196 (394)
T ss_pred CcccccCCC-------------ceecCC---EEE--CCEEEEEC-CCCEEEEEEccCCCEeeeecCCCCccc------cc
Confidence 543332111 012233 222 35788754 567899999998876543321100000 00
Q ss_pred cccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCcccccc----ccCceEEEEcc
Q 001380 771 SFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVL----LQHPLGVYCAK 846 (1089)
Q Consensus 771 ~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~----l~~P~gva~~~ 846 (1089)
....| ++. ++ .+|+.. .++.+..++..+|....-. ..+...+.....+ ...|. + .
T Consensus 197 ~~~sP---~v~-~~-~v~~~~-~~g~v~a~d~~~G~~~W~~-----------~~~~~~~~~~~~~~~~~~~sP~---v-~ 255 (394)
T PRK11138 197 GESAP---ATA-FG-GAIVGG-DNGRVSAVLMEQGQLIWQQ-----------RISQPTGATEIDRLVDVDTTPV---V-V 255 (394)
T ss_pred CCCCC---EEE-CC-EEEEEc-CCCEEEEEEccCChhhhee-----------ccccCCCccchhcccccCCCcE---E-E
Confidence 01122 222 23 677765 4577888888766543211 0010000000000 11232 2 2
Q ss_pred CCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 847 NGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 847 ~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
+|.+|++.. ++.+..+|+.+|.+.=-. .+..+..++++ +|+||+.+. ++.|..++..++
T Consensus 256 ~~~vy~~~~-~g~l~ald~~tG~~~W~~---------------~~~~~~~~~~~-~~~vy~~~~-~g~l~ald~~tG 314 (394)
T PRK11138 256 GGVVYALAY-NGNLVALDLRSGQIVWKR---------------EYGSVNDFAVD-GGRIYLVDQ-NDRVYALDTRGG 314 (394)
T ss_pred CCEEEEEEc-CCeEEEEECCCCCEEEee---------------cCCCccCcEEE-CCEEEEEcC-CCeEEEEECCCC
Confidence 678999874 579999999887643211 11223344554 578999874 688999999776
|
|
| >cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.001 Score=62.80 Aligned_cols=94 Identities=13% Similarity=0.129 Sum_probs=73.0
Q ss_pred cccCCCEEEEEEecC----CCcchhhhh--hhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeec
Q 001380 449 RDLKGKVVVLDFWTY----CCINCMHVL--PDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVND 522 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~----wC~~C~~~~--p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d 522 (1089)
..-.+|.++|+|+++ ||..|+..+ |.+.++-+ .++.+++.++. +.+
T Consensus 13 ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln----~~fv~w~~dv~------~~e------------------ 64 (116)
T cd02991 13 AKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN----TRMLFWACSVA------KPE------------------ 64 (116)
T ss_pred HHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH----cCEEEEEEecC------ChH------------------
Confidence 344689999999999 999998775 34444433 35888888651 111
Q ss_pred CChhHHHHhCCCceeEEEEE---CCCCcEEEEecCCCchhhHHHHHHHHHHH
Q 001380 523 GDMNLWRELGVNSWPTFAVV---GPNGKLLAQLAGEGHRKDLDDLVEAALLF 571 (1089)
Q Consensus 523 ~~~~l~~~~~v~~~Pt~~li---d~~G~i~~~~~G~~~~~~l~~~l~~~l~~ 571 (1089)
..+++..+++..+|++.++ +.+.+++.+..|..+++++...|..++++
T Consensus 65 -g~~la~~l~~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~ 115 (116)
T cd02991 65 -GYRVSQALRERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDA 115 (116)
T ss_pred -HHHHHHHhCCCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 2689999999999999999 77777899999999999999998887754
|
ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis. |
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.1 Score=63.05 Aligned_cols=216 Identities=11% Similarity=0.060 Sum_probs=124.8
Q ss_pred CceEEEeecCCeEEEEeCCCCEEEEEeCC-CC-EEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCE
Q 001380 603 PGKLAIDILNNRLFISDSNHNRIVVTDLD-GN-FIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHA 680 (1089)
Q Consensus 603 P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~-~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~ 680 (1089)
...++++|.++.++++-...+.|.+|+.. +. ....+... .. ...| .-.....++++|++..++++-..++.
T Consensus 77 V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p-~~-~L~g-----H~~~V~sVaf~P~g~~iLaSgS~Dgt 149 (568)
T PTZ00420 77 ILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDP-QC-ILKG-----HKKKISIIDWNPMNYYIMCSSGFDSF 149 (568)
T ss_pred EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccc-eE-Eeec-----CCCcEEEEEECCCCCeEEEEEeCCCe
Confidence 45678887557788888888999999874 22 11111000 00 0000 01245789999988766666666889
Q ss_pred EEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEE-EEeCCCcc
Q 001380 681 LREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTR-AFSGDGYE 759 (1089)
Q Consensus 681 I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~-~~~g~g~~ 759 (1089)
|+.+|+.++......... .....++|+++|. ++++....+.|+.||+.++... .+.+..
T Consensus 150 IrIWDl~tg~~~~~i~~~-----------------~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~tl~gH~-- 209 (568)
T PTZ00420 150 VNIWDIENEKRAFQINMP-----------------KKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIASSFHIHD-- 209 (568)
T ss_pred EEEEECCCCcEEEEEecC-----------------CcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEEEEeccc--
Confidence 999999876543222111 1357899999985 4455555788999999887543 343321
Q ss_pred ccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCC---CeEEEEEcCCCC--eEEEecCCCCCCCCccccCCCCCccccc
Q 001380 760 RNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSES---SSIRALNLKTGG--SRLLAGGDPIFPDNLFKFGDRDGMGSEV 834 (1089)
Q Consensus 760 ~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~---~~I~~~~~~~~~--~~~~~g~~~~~~~~l~~~g~~dg~~~~~ 834 (1089)
+... ....++ ..++++++.|..+.... ..|+.++..... +..+.. + .
T Consensus 210 ----g~~~--s~~v~~--~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l-d--------------~----- 261 (568)
T PTZ00420 210 ----GGKN--TKNIWI--DGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI-D--------------N----- 261 (568)
T ss_pred ----CCce--eEEEEe--eeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe-c--------------C-----
Confidence 0000 000011 12346765665554332 368888877321 111110 0 0
Q ss_pred cccCceEEEEcc-CCcEEEEeCCCCEEEEEeCCCCeEEEEe
Q 001380 835 LLQHPLGVYCAK-NGQIYVADSYNHKIKKLDPASNRVSTLA 874 (1089)
Q Consensus 835 ~l~~P~gva~~~-~G~lyVaD~~n~~I~~~d~~~~~v~t~~ 874 (1089)
-..+.--.+|+ +|.+|++-.+.+.|+.++...+.+..+.
T Consensus 262 -~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~ 301 (568)
T PTZ00420 262 -ASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVN 301 (568)
T ss_pred -CccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeec
Confidence 00111123444 5889999999999999998777766664
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.077 Score=60.13 Aligned_cols=197 Identities=20% Similarity=0.314 Sum_probs=104.5
Q ss_pred CeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCC---cceeEEeeCCC---EEEEEECCC--CE--EE
Q 001380 613 NRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNR---PQGLAYNAKKN---LLYVADTEN--HA--LR 682 (1089)
Q Consensus 613 g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~---P~gla~d~~g~---~lyVaD~~n--~~--I~ 682 (1089)
..++++-.-.+-+.++|++|+.+..+..+ . +|+ -.|+.+ .|. .+.++|..+ +. |+
T Consensus 68 kSlIigTdK~~GL~VYdL~Gk~lq~~~~G-r------------~NNVDvrygf~l--~g~~vDlavas~R~~g~n~l~~f 132 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLDGKELQSLPVG-R------------PNNVDVRYGFPL--NGKTVDLAVASDRSDGRNSLRLF 132 (381)
T ss_dssp G-EEEEEETTTEEEEEETTS-EEEEE-SS--------------EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEE
T ss_pred cceEEEEeCCCCEEEEcCCCcEEEeecCC-C------------cceeeeecceec--CCceEEEEEEecCcCCCCeEEEE
Confidence 33444433356799999999998876432 1 111 123333 232 235556543 34 56
Q ss_pred EEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEe--cCCCEEEEE-ECCCcEEEEEE---CCCCe-----EE
Q 001380 683 EIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYK--PINEKVYIA-MAGQHQIWEHS---TVDGV-----TR 751 (1089)
Q Consensus 683 ~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~--~~g~~lyva-d~~~~~I~~~~---~~~g~-----~~ 751 (1089)
++|.+++.++.+...+.. ....+..|+|+|+- +..+.+|+- ....+.+..|- ...|. ++
T Consensus 133 ~id~~~g~L~~v~~~~~p----------~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR 202 (381)
T PF02333_consen 133 RIDPDTGELTDVTDPAAP----------IATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVR 202 (381)
T ss_dssp EEETTTTEEEE-CBTTC-----------EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEE
T ss_pred EecCCCCcceEcCCCCcc----------cccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEE
Confidence 778778888777532211 12235679999985 344455533 33345443332 22332 34
Q ss_pred EEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCC--CeEEEecCCCCCCCCccccCCCCC
Q 001380 752 AFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTG--GSRLLAGGDPIFPDNLFKFGDRDG 829 (1089)
Q Consensus 752 ~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~--~~~~~~g~~~~~~~~l~~~g~~dg 829 (1089)
.|.. ..|+.|+++|...+.||+++.. .-|+++..+.. ....+.. ....++
T Consensus 203 ~f~~----------------~sQ~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep~~~~~~~~v~-----------~~~g~~ 254 (381)
T PF02333_consen 203 EFKV----------------GSQPEGCVVDDETGRLYVGEED-VGIWRYDAEPEGGNDRTLVA-----------SADGDG 254 (381)
T ss_dssp EEE-----------------SS-EEEEEEETTTTEEEEEETT-TEEEEEESSCCC-S--EEEE-----------EBSSSS
T ss_pred EecC----------------CCcceEEEEecccCCEEEecCc-cEEEEEecCCCCCCcceeee-----------cccccc
Confidence 4432 1389999999988899999965 67899987632 2211110 000001
Q ss_pred ccccccccCceEEEE--cc--CCcEEEEeCCCCEEEEEeCCC
Q 001380 830 MGSEVLLQHPLGVYC--AK--NGQIYVADSYNHKIKKLDPAS 867 (1089)
Q Consensus 830 ~~~~~~l~~P~gva~--~~--~G~lyVaD~~n~~I~~~d~~~ 867 (1089)
...-..||++ .. .|.|.|++-+++...+|+..+
T Consensus 255 -----l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 255 -----LVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp -----B-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred -----cccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 1223567776 33 457999999999999999764
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.069 Score=57.99 Aligned_cols=269 Identities=17% Similarity=0.222 Sum_probs=159.2
Q ss_pred CCCCCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEE
Q 001380 595 LFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYV 673 (1089)
Q Consensus 595 ~~~~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyV 673 (1089)
.....+..-..|++|| .+..|++.++...|-++|.. |+...++.+. ...-.|+++++..-++|-
T Consensus 146 Vi~gHlgWVr~vavdP-~n~wf~tgs~DrtikIwDlatg~LkltltGh--------------i~~vr~vavS~rHpYlFs 210 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDP-GNEWFATGSADRTIKIWDLATGQLKLTLTGH--------------IETVRGVAVSKRHPYLFS 210 (460)
T ss_pred hhhhccceEEEEeeCC-CceeEEecCCCceeEEEEcccCeEEEeecch--------------hheeeeeeecccCceEEE
Confidence 4566788888999998 78889999999999999987 6666666543 235689999987765554
Q ss_pred EECCCCEEEEEECCCCe-EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCC-eEE
Q 001380 674 ADTENHALREIDFVNDT-VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDG-VTR 751 (1089)
Q Consensus 674 aD~~n~~I~~~d~~~g~-v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g-~~~ 751 (1089)
+ .....|..+|+...+ |+... ..|+.-..++++|.- .+.++......++.||..+. .+.
T Consensus 211 ~-gedk~VKCwDLe~nkvIR~Yh-----------------GHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~ 271 (460)
T KOG0285|consen 211 A-GEDKQVKCWDLEYNKVIRHYH-----------------GHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVH 271 (460)
T ss_pred e-cCCCeeEEEechhhhhHHHhc-----------------cccceeEEEeccccc-eeEEecCCcceEEEeeecccceEE
Confidence 4 467889999997644 33333 246778899999977 67777777777888887654 455
Q ss_pred EEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeE-----------EEecCCCCCCCC
Q 001380 752 AFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR-----------LLAGGDPIFPDN 820 (1089)
Q Consensus 752 ~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~-----------~~~g~~~~~~~~ 820 (1089)
.+.|..... ..+...+-+..+ ++.+..++|+.+|+..|... .++.. .-.+
T Consensus 272 ~l~GH~~~V---------------~~V~~~~~dpqv-it~S~D~tvrlWDl~agkt~~tlt~hkksvral~lh---P~e~ 332 (460)
T KOG0285|consen 272 VLSGHTNPV---------------ASVMCQPTDPQV-ITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLH---PKEN 332 (460)
T ss_pred EecCCCCcc---------------eeEEeecCCCce-EEecCCceEEEeeeccCceeEeeecccceeeEEecC---Cchh
Confidence 565533111 122222222133 34455667777776655432 12221 0113
Q ss_pred ccccCCCCCcc-----cccccc-----Cc--eEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEecc-CCCCCCCCccc
Q 001380 821 LFKFGDRDGMG-----SEVLLQ-----HP--LGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGI-GKAGFKDGAAL 887 (1089)
Q Consensus 821 l~~~g~~dg~~-----~~~~l~-----~P--~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~-g~~g~~~g~~~ 887 (1089)
+|.-+..|... ....++ .. ..+++.. ..+||+...|+.|...|..+|.-.....+ -.+|..+..
T Consensus 333 ~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~ns-D~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sE-- 409 (460)
T KOG0285|consen 333 LFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNS-DGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESE-- 409 (460)
T ss_pred hhhccCCccceeccCCccchhhccccccceeeeeeecc-CceEEEcCCceEEEEEecCcCcccccccccccCCccccc--
Confidence 34333333210 001111 11 2334433 35889999999999999877654433211 112211110
Q ss_pred ccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 888 AAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 888 ~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
..-...|+|..|.-+|+.-....|.++.-+..
T Consensus 410 ----agI~as~fDktg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 410 ----AGIFASCFDKTGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred ----cceeEEeecccCceEEeccCCcceEEEecccc
Confidence 11234567777766666666677877766544
|
|
| >COG3700 AphA Acid phosphatase (class B) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00075 Score=65.56 Aligned_cols=96 Identities=22% Similarity=0.138 Sum_probs=68.2
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHH----HHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCC
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVD----ANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTS 240 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~----~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~ 240 (1089)
.+-+-++.|+.--.++|=.++.+|+..+-.++ .+.+.+.+. .+...++.++.. ||..----..+...++
T Consensus 114 IPKevA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~-~m~pv~f~Gdk~---k~~qy~Kt~~i~~~~~--- 186 (237)
T COG3700 114 IPKEVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHIT-NMNPVIFAGDKP---KPGQYTKTQWIQDKNI--- 186 (237)
T ss_pred chHHHHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccC-CCcceeeccCCC---CcccccccHHHHhcCc---
Confidence 34455677788788899999999997664443 334455664 555666666522 3333333455666676
Q ss_pred cEEEEcCChhhHHHHHHcCCeEEEEcCC
Q 001380 241 ECIVIEDALAGVQAAKAAQMRCIAVTTT 268 (1089)
Q Consensus 241 ~~v~VGD~~~Di~aA~~aG~~~i~V~~g 268 (1089)
-++.||+-+||.+|+++|++.|-+.+.
T Consensus 187 -~IhYGDSD~Di~AAkeaG~RgIRilRA 213 (237)
T COG3700 187 -RIHYGDSDNDITAAKEAGARGIRILRA 213 (237)
T ss_pred -eEEecCCchhhhHHHhcCccceeEEec
Confidence 499999999999999999999999874
|
|
| >TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00089 Score=86.44 Aligned_cols=121 Identities=12% Similarity=0.204 Sum_probs=87.6
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCC----ccEEEEcCCc----------------cCCCC
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSM----FDAIVSADAF----------------ENLKP 223 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~----fd~i~~~~~~----------------~~~KP 223 (1089)
.++.|++.+.++.|++.|+++.++|+.+.+.+..+.+++|+. .. .+..+++.+. -...-
T Consensus 536 Dplr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia~~~gi~-~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ar~ 614 (917)
T TIGR01116 536 DPPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRIGIF-SPDEDVTFKSFTGREFDEMGPAKQRAACRSAVLFSRV 614 (917)
T ss_pred CCCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHcCCC-CCCccccceeeeHHHHhhCCHHHHHHhhhcCeEEEec
Confidence 467999999999999999999999999999999999999995 21 1122222111 11233
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecC--cccC
Q 001380 224 APDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKE--IGSV 289 (1089)
Q Consensus 224 ~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~d--l~el 289 (1089)
.|+--.++++.++-..+.+.|+||+.||+.|.+.|++ +|..|.. .+..+..+|+++.+ |..+
T Consensus 615 ~P~~K~~iV~~lq~~g~~va~iGDG~ND~~alk~AdV---Gia~g~g-~~~ak~aAD~vl~dd~f~~i 678 (917)
T TIGR01116 615 EPSHKSELVELLQEQGEIVAMTGDGVNDAPALKKADI---GIAMGSG-TEVAKEASDMVLADDNFATI 678 (917)
T ss_pred CHHHHHHHHHHHHhcCCeEEEecCCcchHHHHHhCCe---eEECCCC-cHHHHHhcCeEEccCCHHHH
Confidence 3444466667776666789999999999999999995 5555532 23344568999877 6555
|
The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522. |
| >COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.004 Score=59.46 Aligned_cols=109 Identities=19% Similarity=0.192 Sum_probs=74.4
Q ss_pred cCCCEEEEEEecCCCcchhhhhhhHH---HHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhH
Q 001380 451 LKGKVVVLDFWTYCCINCMHVLPDLE---FLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNL 527 (1089)
Q Consensus 451 ~~gk~vll~Fwa~wC~~C~~~~p~l~---~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l 527 (1089)
-.+|+.++.|-...|++|-..-.++. ++++-++. .+.++-+... .... +.-+ .|. ....-+..++
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~-hf~~~~l~i~-----~skp-v~f~---~g~--kee~~s~~EL 107 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE-HFSAYYLNIS-----YSKP-VLFK---VGD--KEEKMSTEEL 107 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh-CeEEEEEEec-----cCcc-eEee---cCc--eeeeecHHHH
Confidence 36899999999999999987655543 34444443 3666666321 0000 0000 000 0111234589
Q ss_pred HHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHH
Q 001380 528 WRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLF 571 (1089)
Q Consensus 528 ~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~ 571 (1089)
|+.|+|+++|++++.|++|+.+....|...++++...++-+.+.
T Consensus 108 a~kf~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~g 151 (182)
T COG2143 108 AQKFAVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLKYVADG 151 (182)
T ss_pred HHHhccccCceEEEEcCCCCEEEecCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998887765554
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.18 Score=55.05 Aligned_cols=320 Identities=14% Similarity=0.152 Sum_probs=176.4
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHHhcccccccCCCCCcccccC---CCCC-CC---CCCCCCCc
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFYGKKKLLDNTPLPLSLEKD---NDPR-LF---TSPLKFPG 604 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~~~~~~~l~~~~~~~~~~~~---~~~~-~~---~~~l~~P~ 604 (1089)
-...-|++...+++|.++-+. -.+...+.+.|.++...+...+.---...|...... --|+ .. ..+-+.|.
T Consensus 34 ~~~~~~~~~~~~~~g~ll~kk--wtSv~rlqKki~~Les~l~~~~~el~~g~pt~~~~~~~~wipRp~l~~~l~g~r~~v 111 (406)
T KOG0295|consen 34 HKEASLATEMRKKDGGLLEKK--WTSVDRLQKKIRELESKLDETGDELIAGDPTGSKRTPALWIPRPNLVQKLAGHRSSV 111 (406)
T ss_pred eecCCCcccccccccceeecc--ccccchhHHHHHHHHhhhcccccccccCCCCcCccChhhcCCCCCchhhhhccccce
Confidence 334456667778888877652 224555666666666655544321111111110000 0011 00 11122222
Q ss_pred -eEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEE
Q 001380 605 -KLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALR 682 (1089)
Q Consensus 605 -~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~ 682 (1089)
-+-+.| +--+.++-+.+..|.++|.- |+....+.+. .+..+.|+++..|. +.++-...-.+.
T Consensus 112 t~v~~hp-~~~~v~~as~d~tikv~D~~tg~~e~~LrGH--------------t~sv~di~~~a~Gk-~l~tcSsDl~~~ 175 (406)
T KOG0295|consen 112 TRVIFHP-SEALVVSASEDATIKVFDTETGELERSLRGH--------------TDSVFDISFDASGK-YLATCSSDLSAK 175 (406)
T ss_pred eeeeecc-CceEEEEecCCceEEEEEccchhhhhhhhcc--------------ccceeEEEEecCcc-EEEecCCccchh
Confidence 222333 55566666677888888864 5554333322 23468999999887 333322222366
Q ss_pred EEECCCC--eEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEE-EEeCCCcc
Q 001380 683 EIDFVND--TVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTR-AFSGDGYE 759 (1089)
Q Consensus 683 ~~d~~~g--~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~-~~~g~g~~ 759 (1089)
.+|.+.- .++...|.. ..-..+++-|.|+.| .+....+.|..++..+|.+. +|.+..
T Consensus 176 LWd~~~~~~c~ks~~gh~-----------------h~vS~V~f~P~gd~i-lS~srD~tik~We~~tg~cv~t~~~h~-- 235 (406)
T KOG0295|consen 176 LWDFDTFFRCIKSLIGHE-----------------HGVSSVFFLPLGDHI-LSCSRDNTIKAWECDTGYCVKTFPGHS-- 235 (406)
T ss_pred heeHHHHHHHHHHhcCcc-----------------cceeeEEEEecCCee-eecccccceeEEecccceeEEeccCch--
Confidence 6665431 122222111 134567888888443 34445678888888888654 454321
Q ss_pred ccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCc
Q 001380 760 RNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHP 839 (1089)
Q Consensus 760 ~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P 839 (1089)
.+-.-+.+..|| .|+.+-+.+.+|+.+-..++.-+.+.-+-.+ +-.-.++..... ..+-....|
T Consensus 236 -------------ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh-~vEci~wap~~~-~~~i~~at~ 299 (406)
T KOG0295|consen 236 -------------EWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCKAELREHEH-PVECIAWAPESS-YPSISEATG 299 (406)
T ss_pred -------------HhEEEEEecCCe-eEEEecCCCceEEEEEeccchhhhhhhcccc-ceEEEEeccccc-CcchhhccC
Confidence 255678899998 9999999999999988776522111000000 000000000000 000000111
Q ss_pred eEEEEccCCcEEEEeCCCCEEEEEeCCCCeE-EEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEE
Q 001380 840 LGVYCAKNGQIYVADSYNHKIKKLDPASNRV-STLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYL 918 (1089)
Q Consensus 840 ~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v-~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~ 918 (1089)
.+ ..|.+.++-+..+.|+.+|..++.+ .|+.| ..+.-.|+++.+.|+-+++-..+..++++
T Consensus 300 ~~----~~~~~l~s~SrDktIk~wdv~tg~cL~tL~g--------------hdnwVr~~af~p~Gkyi~ScaDDktlrvw 361 (406)
T KOG0295|consen 300 ST----NGGQVLGSGSRDKTIKIWDVSTGMCLFTLVG--------------HDNWVRGVAFSPGGKYILSCADDKTLRVW 361 (406)
T ss_pred CC----CCccEEEeecccceEEEEeccCCeEEEEEec--------------ccceeeeeEEcCCCeEEEEEecCCcEEEE
Confidence 10 1346778888889999999887765 56665 45778999999999988888889999999
Q ss_pred eCCCC
Q 001380 919 DLNKE 923 (1089)
Q Consensus 919 ~~~~~ 923 (1089)
+++..
T Consensus 362 dl~~~ 366 (406)
T KOG0295|consen 362 DLKNL 366 (406)
T ss_pred Eeccc
Confidence 99887
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.06 Score=61.17 Aligned_cols=133 Identities=17% Similarity=0.223 Sum_probs=75.8
Q ss_pred CceeEEEecCCCEEEEEECCC------cEEEEEECCCCeEEEEeC-CCccccCC--CCCCCCccccCCceEEEcCCCCEE
Q 001380 717 SPWDVCYKPINEKVYIAMAGQ------HQIWEHSTVDGVTRAFSG-DGYERNLN--GSSSLNTSFAQPSGISLSPDFMEI 787 (1089)
Q Consensus 717 ~P~~la~~~~g~~lyvad~~~------~~I~~~~~~~g~~~~~~g-~g~~~~~~--g~~~~~~~~~~P~glav~~~g~~l 787 (1089)
.+-+|++.+ ++.+||++.+. +.|++++..+.....+.- .......+ .....+. ..-|||++++|+.|
T Consensus 86 D~Egi~~~~-~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~---G~E~la~~~dG~~l 161 (326)
T PF13449_consen 86 DPEGIAVPP-DGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNR---GFEGLAVSPDGRTL 161 (326)
T ss_pred ChhHeEEec-CCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCC---CeEEEEECCCCCEE
Confidence 778999954 45999999999 999999988555455521 11100000 0001111 24599999999778
Q ss_pred EEEeCCC---------------CeEEEEEcCCCC--eEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcE
Q 001380 788 YVADSES---------------SSIRALNLKTGG--SRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQI 850 (1089)
Q Consensus 788 yvad~~~---------------~~I~~~~~~~~~--~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~l 850 (1089)
|++-... -+|..+++.+.. ...+ .|..-.. .....-..+..++..++|++
T Consensus 162 ~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~----------~y~ld~~---~~~~~~~~isd~~al~d~~l 228 (326)
T PF13449_consen 162 FAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEY----------AYPLDPP---PTAPGDNGISDIAALPDGRL 228 (326)
T ss_pred EEEECccccCCCcccccccCceEEEEEecCCCCCccceEE----------EEeCCcc---ccccCCCCceeEEEECCCcE
Confidence 8876432 245555554311 1111 1111000 00002335777888889999
Q ss_pred EEEeCC-------CCEEEEEeCC
Q 001380 851 YVADSY-------NHKIKKLDPA 866 (1089)
Q Consensus 851 yVaD~~-------n~~I~~~d~~ 866 (1089)
||-+.. ..+|++++..
T Consensus 229 LvLER~~~~~~~~~~ri~~v~l~ 251 (326)
T PF13449_consen 229 LVLERDFSPGTGNYKRIYRVDLS 251 (326)
T ss_pred EEEEccCCCCccceEEEEEEEcc
Confidence 998755 3467777754
|
|
| >PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0088 Score=64.81 Aligned_cols=105 Identities=15% Similarity=0.164 Sum_probs=75.9
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhH---HHHHHHCCCCCCCcc----EEE-----Ec-C----------CccCC
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKV---DANLAAAGLPVSMFD----AIV-----SA-D----------AFENL 221 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~---~~~l~~~gl~~~~fd----~i~-----~~-~----------~~~~~ 221 (1089)
..-+.+.+++..|++.|+++..+|.....+. .+.|+++|++..--. ..+ .. . -+..+
T Consensus 81 lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~~ 160 (252)
T PF11019_consen 81 LIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTGG 160 (252)
T ss_pred EcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEeCC
Confidence 4567899999999999999999999766554 445667788611110 000 00 0 01225
Q ss_pred CCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHH----HcCCeEEEEcCCC
Q 001380 222 KPAPDIFLSASKILNVPTSECIVIEDALAGVQAAK----AAQMRCIAVTTTL 269 (1089)
Q Consensus 222 KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~----~aG~~~i~V~~g~ 269 (1089)
-.+.+++...+++.|..|+.+|||.|+...+.... ..|+.++++....
T Consensus 161 ~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Yt~ 212 (252)
T PF11019_consen 161 QDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFHYTG 212 (252)
T ss_pred CccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEEcc
Confidence 67789999999999999999999999997776544 4688999987753
|
The function is not known. |
| >PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0014 Score=64.77 Aligned_cols=101 Identities=18% Similarity=0.200 Sum_probs=47.6
Q ss_pred cccCCCEEEEEEecCCCcchhhhhh------hHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeec
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVLP------DLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVND 522 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~p------~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d 522 (1089)
+.-.+|+++|++.++||..|..+.. ++.++.++ .+.-|-| +.++.++--..+..
T Consensus 33 Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~----~FI~Vkv-----Dree~Pdid~~y~~----------- 92 (163)
T PF03190_consen 33 AKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR----NFIPVKV-----DREERPDIDKIYMN----------- 92 (163)
T ss_dssp HHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH----H-EEEEE-----ETTT-HHHHHHHHH-----------
T ss_pred HHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC----CEEEEEe-----ccccCccHHHHHHH-----------
Confidence 4556899999999999999997643 33333222 2433334 22222221111110
Q ss_pred CChhHHHHhCCCceeEEEEECCCCcEEEEecC--C---CchhhHHHHHHHHHHHh
Q 001380 523 GDMNLWRELGVNSWPTFAVVGPNGKLLAQLAG--E---GHRKDLDDLVEAALLFY 572 (1089)
Q Consensus 523 ~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G--~---~~~~~l~~~l~~~l~~~ 572 (1089)
......|..+||++++++|+|+.++.... . .....+.++|..+.+..
T Consensus 93 ---~~~~~~~~gGwPl~vfltPdg~p~~~~tY~P~~~~~g~~~f~~~l~~i~~~w 144 (163)
T PF03190_consen 93 ---AVQAMSGSGGWPLTVFLTPDGKPFFGGTYFPPEDRYGRPGFLQLLERIAELW 144 (163)
T ss_dssp ---HHHHHHS---SSEEEEE-TTS-EEEEESS--SS-BTTB--HHHHHHHHHHHH
T ss_pred ---HHHHhcCCCCCCceEEECCCCCeeeeeeecCCCCCCCCccHHHHHHHHHHHH
Confidence 11122378899999999999999886321 1 12235555555554443
|
; PDB: 3IRA_A. |
| >KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0046 Score=58.74 Aligned_cols=79 Identities=22% Similarity=0.188 Sum_probs=52.2
Q ss_pred CeEEEEcCC--------ChHhHHHHHHHCCCCCCCccEEEEcCCccCCCC--CHHHHHHHHHHcC-CCCCcEEEEcCCh-
Q 001380 182 LKVAVASSA--------DRIKVDANLAAAGLPVSMFDAIVSADAFENLKP--APDIFLSASKILN-VPTSECIVIEDAL- 249 (1089)
Q Consensus 182 i~vaIvSn~--------~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP--~~~~~~~~l~~lg-v~p~~~v~VGD~~- 249 (1089)
..++|+||. +.+.+..+-++.|++ .+-.+ ..|| ..+.+.+....-. ..++|++||||++
T Consensus 80 k~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIp-----VlRHs----~kKP~ct~E~~~y~~~Nshv~~~se~~~vGDRlf 150 (190)
T KOG2961|consen 80 KDIAVFSNSAGLTEYDHDDSKAKALEAKIGIP-----VLRHS----VKKPACTAEEVEYHFGNSHVCTSSELIMVGDRLF 150 (190)
T ss_pred ccEEEEecCcCccccCCchHHHHHHHHhhCCc-----eEeec----ccCCCccHHHHHHHhCCcccCChhHeEEEccchh
Confidence 457888873 223445555566775 11111 1233 2344444433223 4789999999999
Q ss_pred hhHHHHHHcCCeEEEEcCCC
Q 001380 250 AGVQAAKAAQMRCIAVTTTL 269 (1089)
Q Consensus 250 ~Di~aA~~aG~~~i~V~~g~ 269 (1089)
+||..|...|-..+|...|+
T Consensus 151 TDI~~aN~mGs~gVw~~~gv 170 (190)
T KOG2961|consen 151 TDIVYANRMGSLGVWTEPGV 170 (190)
T ss_pred hhHhhhhhccceeEEecccc
Confidence 99999999999999999886
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.065 Score=55.05 Aligned_cols=229 Identities=14% Similarity=0.188 Sum_probs=138.2
Q ss_pred CCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCe
Q 001380 612 NNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDT 690 (1089)
Q Consensus 612 ~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~ 690 (1089)
+|+.-++=.....|..|++- |..+++..+.|. ....+++..++. -+.+..+...++.+|.++|+
T Consensus 28 dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~--------------EVlD~~~s~Dns-kf~s~GgDk~v~vwDV~TGk 92 (307)
T KOG0316|consen 28 DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGH--------------EVLDAALSSDNS-KFASCGGDKAVQVWDVNTGK 92 (307)
T ss_pred CCCEEEEcCCCceEEeecccccceeeeecCCCc--------------eeeecccccccc-ccccCCCCceEEEEEcccCe
Confidence 45544444444556667775 777877766543 334555655554 46666678899999998887
Q ss_pred EEE-EecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCe---EEEEeCCCccccCCCCC
Q 001380 691 VRT-LAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGV---TRAFSGDGYERNLNGSS 766 (1089)
Q Consensus 691 v~~-~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~---~~~~~g~g~~~~~~g~~ 766 (1089)
+.+ +.|.+. .-+.|.|+.+. .+.++..-...++.||=.... ++.+.
T Consensus 93 v~Rr~rgH~a-----------------qVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQild------------ 142 (307)
T KOG0316|consen 93 VDRRFRGHLA-----------------QVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILD------------ 142 (307)
T ss_pred eeeecccccc-----------------eeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhh------------
Confidence 655 433332 34567777665 666666666778777754332 22222
Q ss_pred CCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCc-eEEEEc
Q 001380 767 SLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHP-LGVYCA 845 (1089)
Q Consensus 767 ~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P-~gva~~ 845 (1089)
.....-+.|.++ + ...|+-+-.+++|.++...|.... -.+.+| ..+.++
T Consensus 143 ---ea~D~V~Si~v~--~-heIvaGS~DGtvRtydiR~G~l~s------------------------Dy~g~pit~vs~s 192 (307)
T KOG0316|consen 143 ---EAKDGVSSIDVA--E-HEIVAGSVDGTVRTYDIRKGTLSS------------------------DYFGHPITSVSFS 192 (307)
T ss_pred ---hhcCceeEEEec--c-cEEEeeccCCcEEEEEeecceeeh------------------------hhcCCcceeEEec
Confidence 111223344443 3 778898999999999987553321 114455 578899
Q ss_pred cCCcEEEEeCCCCEEEEEeCCCCeEEE-EeccCCCCCCCCcccccccCCCceEEEc--cCCcEEEEECCC-CEEEEEe
Q 001380 846 KNGQIYVADSYNHKIKKLDPASNRVST-LAGIGKAGFKDGAALAAQLSEPAGIIEA--QNGNLFIADTNN-NIIRYLD 919 (1089)
Q Consensus 846 ~~G~lyVaD~~n~~I~~~d~~~~~v~t-~~g~g~~g~~~g~~~~~~l~~P~gi~vd--~~G~lyVad~~n-~~I~~~~ 919 (1089)
++|+...+..-+..|+.+|..+|++.. ..|.-+.. ......|++-.-..+. .||.+|+-|.-+ +.|.++.
T Consensus 193 ~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~e----ykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~ 266 (307)
T KOG0316|consen 193 KDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNME----YKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLS 266 (307)
T ss_pred CCCCEEEEeeccceeeecccchhHHHHHhcccccce----eeeeeeecccceeEEeccCCceEEEEEeccceeeeeec
Confidence 999999999999999999998876543 22222111 1233455555555553 356677766543 3333433
|
|
| >cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0022 Score=63.95 Aligned_cols=41 Identities=29% Similarity=0.589 Sum_probs=32.8
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEE
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGV 492 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v 492 (1089)
.++++|+.|+.++||+|....|.+.++..++.+..+.+..+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~ 44 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKEF 44 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEeC
Confidence 46889999999999999999999999888876433444433
|
It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown. |
| >COG2503 Predicted secreted acid phosphatase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.003 Score=65.11 Aligned_cols=88 Identities=22% Similarity=0.281 Sum_probs=64.0
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHh----HHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCC
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIK----VDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTS 240 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~----~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~ 240 (1089)
.+.||+.|++.+.-++|..|+.+||+..+. ....|+..|++...-+.++-- ...|++..-+..+.+.+.+
T Consensus 122 k~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~~~~~~~llk---k~~k~Ke~R~~~v~k~~~i--- 195 (274)
T COG2503 122 KAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQVLESHLLLK---KDKKSKEVRRQAVEKDYKI--- 195 (274)
T ss_pred ccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHcCcccccccceEEe---eCCCcHHHHHHHHhhccce---
Confidence 689999999999999999999999987655 556678888872223333332 2356666666666664444
Q ss_pred cEEEEcCChhhHHHHHHcC
Q 001380 241 ECIVIEDALAGVQAAKAAQ 259 (1089)
Q Consensus 241 ~~v~VGD~~~Di~aA~~aG 259 (1089)
++.|||.+.|.-.....+
T Consensus 196 -Vm~vGDNl~DF~d~~~k~ 213 (274)
T COG2503 196 -VMLVGDNLDDFGDNAYKK 213 (274)
T ss_pred -eeEecCchhhhcchhhhh
Confidence 899999998876554444
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.62 Score=54.18 Aligned_cols=244 Identities=16% Similarity=0.189 Sum_probs=127.4
Q ss_pred EEeecCCeEEEEeCCCCEEEEEeC-CCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEE
Q 001380 607 AIDILNNRLFISDSNHNRIVVTDL-DGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREID 685 (1089)
Q Consensus 607 avd~~~g~L~vsd~~~~~I~~~~~-~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d 685 (1089)
+++ ++.+|+... ++.++.+|. +|+.+......+. ....| ++. ++.+|+.. .++.|+.+|
T Consensus 102 ~v~--~~~v~v~~~-~g~l~ald~~tG~~~W~~~~~~~-----------~~~~p---~v~--~~~v~v~~-~~g~l~a~d 161 (377)
T TIGR03300 102 GAD--GGLVFVGTE-KGEVIALDAEDGKELWRAKLSSE-----------VLSPP---LVA--NGLVVVRT-NDGRLTALD 161 (377)
T ss_pred EEc--CCEEEEEcC-CCEEEEEECCCCcEeeeeccCce-----------eecCC---EEE--CCEEEEEC-CCCeEEEEE
Confidence 454 788888764 578999998 5888776543311 01122 222 34477764 467899999
Q ss_pred CCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCC
Q 001380 686 FVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGS 765 (1089)
Q Consensus 686 ~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~ 765 (1089)
.++|.+.--......... .....+| + +. ++.+|+.. .++.+..+|+.+|....-...+........
T Consensus 162 ~~tG~~~W~~~~~~~~~~--------~~~~~sp--~-~~--~~~v~~~~-~~g~v~ald~~tG~~~W~~~~~~~~g~~~~ 227 (377)
T TIGR03300 162 AATGERLWTYSRVTPALT--------LRGSASP--V-IA--DGGVLVGF-AGGKLVALDLQTGQPLWEQRVALPKGRTEL 227 (377)
T ss_pred cCCCceeeEEccCCCcee--------ecCCCCC--E-EE--CCEEEEEC-CCCEEEEEEccCCCEeeeeccccCCCCCch
Confidence 987765433221110000 0001122 2 22 24676654 457899999988865432111000000000
Q ss_pred CCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEc
Q 001380 766 SSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCA 845 (1089)
Q Consensus 766 ~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~ 845 (1089)
.........| .+. ++.+|+++. .+.++.++.++|....-.. .+ .....+++
T Consensus 228 ~~~~~~~~~p---~~~--~~~vy~~~~-~g~l~a~d~~tG~~~W~~~-----------~~------------~~~~p~~~ 278 (377)
T TIGR03300 228 ERLVDVDGDP---VVD--GGQVYAVSY-QGRVAALDLRSGRVLWKRD-----------AS------------SYQGPAVD 278 (377)
T ss_pred hhhhccCCcc---EEE--CCEEEEEEc-CCEEEEEECCCCcEEEeec-----------cC------------CccCceEe
Confidence 0000000111 222 348998875 5789999998775532211 00 11122333
Q ss_pred cCCcEEEEeCCCCEEEEEeCCCCeEE-EEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCCC
Q 001380 846 KNGQIYVADSYNHKIKKLDPASNRVS-TLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKEE 924 (1089)
Q Consensus 846 ~~G~lyVaD~~n~~I~~~d~~~~~v~-t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~~ 924 (1089)
+|++|+++ .++.|..+|..++.+. .....+ . .....| ++. ++.||+.+ .++.|..++..++
T Consensus 279 -~~~vyv~~-~~G~l~~~d~~tG~~~W~~~~~~-----~-----~~~ssp---~i~-g~~l~~~~-~~G~l~~~d~~tG- 340 (377)
T TIGR03300 279 -DNRLYVTD-ADGVVVALDRRSGSELWKNDELK-----Y-----RQLTAP---AVV-GGYLVVGD-FEGYLHWLSREDG- 340 (377)
T ss_pred -CCEEEEEC-CCCeEEEEECCCCcEEEcccccc-----C-----CccccC---EEE-CCEEEEEe-CCCEEEEEECCCC-
Confidence 67899986 5689999999877543 111100 0 022333 333 45788876 4578999998765
Q ss_pred ceEEEEe
Q 001380 925 PELQTLE 931 (1089)
Q Consensus 925 ~~~~~l~ 931 (1089)
..+..+.
T Consensus 341 ~~~~~~~ 347 (377)
T TIGR03300 341 SFVARLK 347 (377)
T ss_pred CEEEEEE
Confidence 2344444
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.098 Score=62.03 Aligned_cols=264 Identities=17% Similarity=0.233 Sum_probs=160.8
Q ss_pred CceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEE
Q 001380 603 PGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHAL 681 (1089)
Q Consensus 603 P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I 681 (1089)
-.+++++ ++.+.+...++++|..|+.+ ++-+++++.. .-.+..+-|.++ ..|..+.|+.+
T Consensus 376 VRsl~vS--~d~~~~~Sga~~SikiWn~~t~kciRTi~~~----------------y~l~~~Fvpgd~-~Iv~G~k~Gel 436 (888)
T KOG0306|consen 376 VRSLCVS--SDSILLASGAGESIKIWNRDTLKCIRTITCG----------------YILASKFVPGDR-YIVLGTKNGEL 436 (888)
T ss_pred eeEEEee--cCceeeeecCCCcEEEEEccCcceeEEeccc----------------cEEEEEecCCCc-eEEEeccCCce
Confidence 3467887 45566666677899999988 8888888654 235666666555 66777889999
Q ss_pred EEEECCCCe-EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccc
Q 001380 682 REIDFVNDT-VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYER 760 (1089)
Q Consensus 682 ~~~d~~~g~-v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~ 760 (1089)
..||+.+.. +.++-.. =.--|.|++.|++ .=+++....+.|.-||.. ....-.|...
T Consensus 437 ~vfdlaS~~l~Eti~AH-----------------dgaIWsi~~~pD~-~g~vT~saDktVkfWdf~----l~~~~~gt~~ 494 (888)
T KOG0306|consen 437 QVFDLASASLVETIRAH-----------------DGAIWSISLSPDN-KGFVTGSADKTVKFWDFK----LVVSVPGTQK 494 (888)
T ss_pred EEEEeehhhhhhhhhcc-----------------ccceeeeeecCCC-CceEEecCCcEEEEEeEE----EEeccCcccc
Confidence 999987643 3333210 0156899999988 667777777887777642 1111001000
Q ss_pred cCCCCCCCCccc---cCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeE-EEecC-CCCC----------------CC
Q 001380 761 NLNGSSSLNTSF---AQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR-LLAGG-DPIF----------------PD 819 (1089)
Q Consensus 761 ~~~g~~~~~~~~---~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~-~~~g~-~~~~----------------~~ 819 (1089)
.+ -+......+ .+-..+.++||| .+.++.--+++|.+|-+++-... .+-|+ -|.. -+
T Consensus 495 k~-lsl~~~rtLel~ddvL~v~~Spdg-k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADK 572 (888)
T KOG0306|consen 495 KV-LSLKHTRTLELEDDVLCVSVSPDG-KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADK 572 (888)
T ss_pred ee-eeeccceEEeccccEEEEEEcCCC-cEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCC
Confidence 00 000000111 245678899999 55555555677776665532110 11111 0000 01
Q ss_pred CccccCCCCCccccccccC---ceEEEEccCCcEEEEeCCCCEEEEEeCCC-CeEEEEeccCCCCCCCCcccccccCCCc
Q 001380 820 NLFKFGDRDGMGSEVLLQH---PLGVYCAKNGQIYVADSYNHKIKKLDPAS-NRVSTLAGIGKAGFKDGAALAAQLSEPA 895 (1089)
Q Consensus 820 ~l~~~g~~dg~~~~~~l~~---P~gva~~~~G~lyVaD~~n~~I~~~d~~~-~~v~t~~g~g~~g~~~g~~~~~~l~~P~ 895 (1089)
+.--+|-.-|.+....|.| -..|.+-|+-+++++-...++|+++|-.. ..+.++.| ...+-.
T Consensus 573 nVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~--------------H~~ev~ 638 (888)
T KOG0306|consen 573 NVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDG--------------HHSEVW 638 (888)
T ss_pred ceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeecc--------------chheee
Confidence 1112222223333333443 35677788889999999999999998532 23445443 567789
Q ss_pred eEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 896 GIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 896 gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
.+++.++|...|+.+..+.|+.+.....
T Consensus 639 cLav~~~G~~vvs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 639 CLAVSPNGSFVVSSSHDKSIRLWERTDE 666 (888)
T ss_pred eeEEcCCCCeEEeccCCceeEeeeccCc
Confidence 9999999999999999999999987664
|
|
| >PRK10877 protein disulfide isomerase II DsbC; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0028 Score=67.84 Aligned_cols=107 Identities=19% Similarity=0.264 Sum_probs=69.5
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCC-Ch-------------hcHHHHHHHHHHcCCcc
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFD-NE-------------KDLEAIRNAVLRYGISH 517 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~-~~-------------~~~~~~~~~~~~~~~~~ 517 (1089)
.||.+|+.|.-+-||+|++.++++.++.+ .++.+.-+..+-.. +. +..+++.++.....++-
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~ 181 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA----LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSP 181 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc----CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCc
Confidence 57899999999999999999999887754 35666555443211 11 11223333333322221
Q ss_pred c---eeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHH
Q 001380 518 P---VVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEA 567 (1089)
Q Consensus 518 ~---v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~ 567 (1089)
. ...+.+.++++++||+++|++++ ++|+.+ .|....+.+.++|++
T Consensus 182 ~~c~~~v~~~~~la~~lgi~gTPtiv~--~~G~~~---~G~~~~~~L~~~l~~ 229 (232)
T PRK10877 182 ASCDVDIADHYALGVQFGVQGTPAIVL--SNGTLV---PGYQGPKEMKAFLDE 229 (232)
T ss_pred ccccchHHHhHHHHHHcCCccccEEEE--cCCeEe---eCCCCHHHHHHHHHH
Confidence 1 11234668899999999999884 467764 788888888888764
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.071 Score=54.80 Aligned_cols=192 Identities=17% Similarity=0.236 Sum_probs=130.2
Q ss_pred ceeEEeeCCCEEEEEECCCCEEEEEECCCC-eEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCc
Q 001380 660 QGLAYNAKKNLLYVADTENHALREIDFVND-TVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQH 738 (1089)
Q Consensus 660 ~gla~d~~g~~lyVaD~~n~~I~~~d~~~g-~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~ 738 (1089)
..+.++-+|| .-++-.....|+.+++..| .+.+..|.|. .-.+++...++ .=+.+..+..
T Consensus 21 ~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~liktYsghG~-----------------EVlD~~~s~Dn-skf~s~GgDk 81 (307)
T KOG0316|consen 21 RAVRYNVDGN-YCLTCGSDRTVRLWNPLRGALIKTYSGHGH-----------------EVLDAALSSDN-SKFASCGGDK 81 (307)
T ss_pred EEEEEccCCC-EEEEcCCCceEEeecccccceeeeecCCCc-----------------eeeeccccccc-cccccCCCCc
Confidence 4455666788 3444445667888988665 5788888774 34566666554 5566677788
Q ss_pred EEEEEECCCCeE-EEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCC
Q 001380 739 QIWEHSTVDGVT-RAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIF 817 (1089)
Q Consensus 739 ~I~~~~~~~g~~-~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~ 817 (1089)
.+..||-.+|++ +.|.|.+ +|-+.+.++.+. .+.++-+..+++|.++-.......+.-
T Consensus 82 ~v~vwDV~TGkv~Rr~rgH~---------------aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQi----- 140 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRFRGHL---------------AQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQI----- 140 (307)
T ss_pred eEEEEEcccCeeeeeccccc---------------ceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccch-----
Confidence 899999988865 5666543 466778888776 888888888999999866433221100
Q ss_pred CCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCC-Cce
Q 001380 818 PDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSE-PAG 896 (1089)
Q Consensus 818 ~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~-P~g 896 (1089)
+. -..| .-.. ++-.++..|+.+-.+++++||...|++..= -+.. -+.
T Consensus 141 ----ld-ea~D---------~V~S--i~v~~heIvaGS~DGtvRtydiR~G~l~sD----------------y~g~pit~ 188 (307)
T KOG0316|consen 141 ----LD-EAKD---------GVSS--IDVAEHEIVAGSVDGTVRTYDIRKGTLSSD----------------YFGHPITS 188 (307)
T ss_pred ----hh-hhcC---------ceeE--EEecccEEEeeccCCcEEEEEeecceeehh----------------hcCCccee
Confidence 00 0111 1223 344578889999999999999866654331 1222 457
Q ss_pred EEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 897 IIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 897 i~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
+++.++|+-..+...+..|+.++..++
T Consensus 189 vs~s~d~nc~La~~l~stlrLlDk~tG 215 (307)
T KOG0316|consen 189 VSFSKDGNCSLASSLDSTLRLLDKETG 215 (307)
T ss_pred EEecCCCCEEEEeeccceeeecccchh
Confidence 889999998888888999999998876
|
|
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.41 Score=53.42 Aligned_cols=137 Identities=15% Similarity=0.100 Sum_probs=85.9
Q ss_pred CceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEe-CCCccccCCCCCCCCccccCCceEEEc----CCCCEEEEEe
Q 001380 717 SPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFS-GDGYERNLNGSSSLNTSFAQPSGISLS----PDFMEIYVAD 791 (1089)
Q Consensus 717 ~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~-g~g~~~~~~g~~~~~~~~~~P~glav~----~~g~~lyvad 791 (1089)
...+|..+++| .++|+....+.|++++..+|.+.... |... ..... ....|.+-+...+- .++ .|-+-|
T Consensus 145 HiNsV~~~~~G-~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~-~df~~---~~~~f~~QHdar~~~~~~~~~-~IslFD 218 (299)
T PF14269_consen 145 HINSVDKDDDG-DYLISSRNTSTIYKIDPSTGKIIWRLGGKRN-SDFTL---PATNFSWQHDARFLNESNDDG-TISLFD 218 (299)
T ss_pred EeeeeeecCCc-cEEEEecccCEEEEEECCCCcEEEEeCCCCC-Ccccc---cCCcEeeccCCEEeccCCCCC-EEEEEc
Confidence 45567788877 67799999999999999988777554 3311 11111 23456666666665 444 777766
Q ss_pred C----------CCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEE
Q 001380 792 S----------ESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIK 861 (1089)
Q Consensus 792 ~----------~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~ 861 (1089)
. ..++|..+++.+..++.+..-. ..+..++.. ..-.+-..++|+++|.....+++.
T Consensus 219 N~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~-~~~~~~~s~-------------~~G~~Q~L~nGn~li~~g~~g~~~ 284 (299)
T PF14269_consen 219 NANSDFNGTEPSRGLVLELDPETMTVTLVREYS-DHPDGFYSP-------------SQGSAQRLPNGNVLIGWGNNGRIS 284 (299)
T ss_pred CCCCCCCCCcCCCceEEEEECCCCEEEEEEEee-cCCCccccc-------------CCCcceECCCCCEEEecCCCceEE
Confidence 6 3567888888855554443210 001111110 111233457899999999999999
Q ss_pred EEeCCCCeEEEE
Q 001380 862 KLDPASNRVSTL 873 (1089)
Q Consensus 862 ~~d~~~~~v~t~ 873 (1089)
.+++++..+-.+
T Consensus 285 E~~~~G~vv~~~ 296 (299)
T PF14269_consen 285 EFTPDGEVVWEA 296 (299)
T ss_pred EECCCCCEEEEE
Confidence 999987666543
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.16 Score=57.05 Aligned_cols=158 Identities=14% Similarity=0.108 Sum_probs=86.8
Q ss_pred eEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEE
Q 001380 605 KLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREI 684 (1089)
Q Consensus 605 ~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~ 684 (1089)
.|.+.|..--|.+++. ++++..+..||++-..+.+-.-..+ --+-.++.|+|....++.+....++.+
T Consensus 218 sv~FHp~~plllvaG~-d~~lrifqvDGk~N~~lqS~~l~~f-----------Pi~~a~f~p~G~~~i~~s~rrky~ysy 285 (514)
T KOG2055|consen 218 SVQFHPTAPLLLVAGL-DGTLRIFQVDGKVNPKLQSIHLEKF-----------PIQKAEFAPNGHSVIFTSGRRKYLYSY 285 (514)
T ss_pred EEEecCCCceEEEecC-CCcEEEEEecCccChhheeeeeccC-----------ccceeeecCCCceEEEecccceEEEEe
Confidence 4566764444555555 4666667667765433222111100 125566777887445555556677889
Q ss_pred ECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeE-EEEeCCCccccCC
Q 001380 685 DFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVT-RAFSGDGYERNLN 763 (1089)
Q Consensus 685 d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~-~~~~g~g~~~~~~ 763 (1089)
|+.+.+++.+...+... -.+-.-..++++++.|.++ ..++.|..+...++.. ..+--.|
T Consensus 286 Dle~ak~~k~~~~~g~e-------------~~~~e~FeVShd~~fia~~-G~~G~I~lLhakT~eli~s~KieG------ 345 (514)
T KOG2055|consen 286 DLETAKVTKLKPPYGVE-------------EKSMERFEVSHDSNFIAIA-GNNGHIHLLHAKTKELITSFKIEG------ 345 (514)
T ss_pred eccccccccccCCCCcc-------------cchhheeEecCCCCeEEEc-ccCceEEeehhhhhhhhheeeecc------
Confidence 99888888775432111 0133456677887633333 2355666655544432 2222111
Q ss_pred CCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCC
Q 001380 764 GSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTG 805 (1089)
Q Consensus 764 g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~ 805 (1089)
.-++++++.+++.||++ .+.+.|+++++...
T Consensus 346 ----------~v~~~~fsSdsk~l~~~-~~~GeV~v~nl~~~ 376 (514)
T KOG2055|consen 346 ----------VVSDFTFSSDSKELLAS-GGTGEVYVWNLRQN 376 (514)
T ss_pred ----------EEeeEEEecCCcEEEEE-cCCceEEEEecCCc
Confidence 24578888888555555 45568888887644
|
|
| >PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0019 Score=60.58 Aligned_cols=76 Identities=22% Similarity=0.243 Sum_probs=50.5
Q ss_pred cCCCEEEEEEecC-------CCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecC
Q 001380 451 LKGKVVVLDFWTY-------CCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDG 523 (1089)
Q Consensus 451 ~~gk~vll~Fwa~-------wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~ 523 (1089)
-.|++++|.|.++ |||.|....|.+++..++.++ +..+|-|.+ .+...|+ |+
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~-~~~lv~v~V------G~r~~Wk--------------dp 75 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE-NARLVYVEV------GDRPEWK--------------DP 75 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST-TEEEEEEE---------HHHHC---------------T
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC-CceEEEEEc------CCHHHhC--------------CC
Confidence 3568888888854 999999999999998887554 577777755 2445555 55
Q ss_pred ChhHHH--HhCCCceeEEEEECCCCc
Q 001380 524 DMNLWR--ELGVNSWPTFAVVGPNGK 547 (1089)
Q Consensus 524 ~~~l~~--~~~v~~~Pt~~lid~~G~ 547 (1089)
++..-+ .+++.++||++-++..++
T Consensus 76 ~n~fR~~p~~~l~~IPTLi~~~~~~r 101 (119)
T PF06110_consen 76 NNPFRTDPDLKLKGIPTLIRWETGER 101 (119)
T ss_dssp TSHHHH--CC---SSSEEEECTSS-E
T ss_pred CCCceEcceeeeeecceEEEECCCCc
Confidence 555555 599999999999976644
|
; PDB: 1V9W_A 1WOU_A. |
| >KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0004 Score=79.81 Aligned_cols=95 Identities=21% Similarity=0.418 Sum_probs=67.7
Q ss_pred CEEEEEEecCCCcchhhhhhhHHHHHHHcCC-CC-EEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 454 KVVVLDFWTYCCINCMHVLPDLEFLEKKYKD-MP-FTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 454 k~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~-~~-v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
|..||.||++||++|+...|.++++++...+ .+ +.|.+|.++ .+.+..+++.|
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA-------------------------~~~N~~lCRef 112 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCA-------------------------DEENVKLCREF 112 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeecc-------------------------chhhhhhHhhc
Confidence 5688999999999999999999999988765 23 555566553 13467899999
Q ss_pred CCCceeEEEEECCCCcEE---EEecCCCchhhHHHHHHHHHHHhc
Q 001380 532 GVNSWPTFAVVGPNGKLL---AQLAGEGHRKDLDDLVEAALLFYG 573 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~---~~~~G~~~~~~l~~~l~~~l~~~~ 573 (1089)
+|.++|+...+.++-+-. ....|.....++.+.+.+.+.+..
T Consensus 113 ~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~ 157 (606)
T KOG1731|consen 113 SVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEED 157 (606)
T ss_pred CCCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHH
Confidence 999999999997772211 112344445566666666555543
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=96.96 E-value=1.6 Score=53.10 Aligned_cols=179 Identities=16% Similarity=0.129 Sum_probs=97.1
Q ss_pred CCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCe
Q 001380 612 NNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDT 690 (1089)
Q Consensus 612 ~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~ 690 (1089)
++.||+++.. +.|+-+|.. |+.+.++......... .....-....|+++. ++.||+++. +..|..+|..+|+
T Consensus 69 ~g~vyv~s~~-g~v~AlDa~TGk~lW~~~~~~~~~~~---~~~~~~~~~rg~av~--~~~v~v~t~-dg~l~ALDa~TGk 141 (527)
T TIGR03075 69 DGVMYVTTSY-SRVYALDAKTGKELWKYDPKLPDDVI---PVMCCDVVNRGVALY--DGKVFFGTL-DARLVALDAKTGK 141 (527)
T ss_pred CCEEEEECCC-CcEEEEECCCCceeeEecCCCCcccc---cccccccccccceEE--CCEEEEEcC-CCEEEEEECCCCC
Confidence 7899998874 578888875 8888765442111000 000000123566775 345888764 5689999998887
Q ss_pred EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC-----CcEEEEEECCCCeEEEEeCCCccc-----
Q 001380 691 VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG-----QHQIWEHSTVDGVTRAFSGDGYER----- 760 (1089)
Q Consensus 691 v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~-----~~~I~~~~~~~g~~~~~~g~g~~~----- 760 (1089)
+.--...+..... ....+.| +.. ++.||+...+ .+.|+.+|.++|+...-.......
T Consensus 142 ~~W~~~~~~~~~~--------~~~tssP--~v~---~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~ 208 (527)
T TIGR03075 142 VVWSKKNGDYKAG--------YTITAAP--LVV---KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLD 208 (527)
T ss_pred EEeeccccccccc--------ccccCCc--EEE---CCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccc
Confidence 7654332211000 0001122 222 3588887543 468999999988765322111100
Q ss_pred ----cCCCCCCCCcc--------ccCC-ceEEEcCCCCEEEEEeCC---------------CCeEEEEEcCCCCeEEE
Q 001380 761 ----NLNGSSSLNTS--------FAQP-SGISLSPDFMEIYVADSE---------------SSSIRALNLKTGGSRLL 810 (1089)
Q Consensus 761 ----~~~g~~~~~~~--------~~~P-~glav~~~g~~lyvad~~---------------~~~I~~~~~~~~~~~~~ 810 (1089)
...+......+ -... ..+++|++.+.||+.-.+ +++|..++.++|..+-.
T Consensus 209 ~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~ 286 (527)
T TIGR03075 209 KADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWH 286 (527)
T ss_pred ccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEe
Confidence 00011100000 0011 145889887799987633 34888999998887643
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0027 Score=55.07 Aligned_cols=71 Identities=21% Similarity=0.472 Sum_probs=47.8
Q ss_pred EecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhCCCceeEE
Q 001380 460 FWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTF 539 (1089)
Q Consensus 460 Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~Pt~ 539 (1089)
+++++|++|......++++.+++. ..+.++-+ ....++ ..|||..+|++
T Consensus 5 v~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~-----------------------------~~~~~~-~~ygv~~vPal 53 (76)
T PF13192_consen 5 VFSPGCPYCPELVQLLKEAAEELG-IEVEIIDI-----------------------------EDFEEI-EKYGVMSVPAL 53 (76)
T ss_dssp EECSSCTTHHHHHHHHHHHHHHTT-EEEEEEET-----------------------------TTHHHH-HHTT-SSSSEE
T ss_pred EeCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEc-----------------------------cCHHHH-HHcCCCCCCEE
Confidence 368889999999999999988874 33444433 122344 89999999999
Q ss_pred EEECCCCcEEEEecC-CCchhhHHHHHH
Q 001380 540 AVVGPNGKLLAQLAG-EGHRKDLDDLVE 566 (1089)
Q Consensus 540 ~lid~~G~i~~~~~G-~~~~~~l~~~l~ 566 (1089)
+| ||+++ +.| ..+.+++.++|+
T Consensus 54 -vI--ng~~~--~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 54 -VI--NGKVV--FVGRVPSKEELKELLE 76 (76)
T ss_dssp -EE--TTEEE--EESS--HHHHHHHHHH
T ss_pred -EE--CCEEE--EEecCCCHHHHHHHhC
Confidence 55 47765 556 567777777663
|
... |
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.019 Score=62.27 Aligned_cols=157 Identities=14% Similarity=0.205 Sum_probs=105.1
Q ss_pred ceeEEEecCCCEEEEEECCCcEEEEEECCCCeEE-EEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCe
Q 001380 718 PWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTR-AFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSS 796 (1089)
Q Consensus 718 P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~-~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~ 796 (1089)
-..+.++|....|..+.+..+.|..||...+... .+. .-..+++|+++|++ ..|++-.+.+.
T Consensus 190 i~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi----------------~~mRTN~IswnPea-fnF~~a~ED~n 252 (433)
T KOG0268|consen 190 ISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI----------------LTMRTNTICWNPEA-FNFVAANEDHN 252 (433)
T ss_pred eeEEecCCCcchheeeeccCCceEEEecccCCccceee----------------eeccccceecCccc-cceeecccccc
Confidence 3556677776667777777888999997765432 111 01257899999976 99999999999
Q ss_pred EEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEecc
Q 001380 797 IRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGI 876 (1089)
Q Consensus 797 I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~ 876 (1089)
++.+|...- .+.+ +.+ .++ .+.-..|+++|.|.=+|+.+|...|+.|....+.-.-+--+
T Consensus 253 lY~~DmR~l-~~p~---------~v~-~dh---------vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht 312 (433)
T KOG0268|consen 253 LYTYDMRNL-SRPL---------NVH-KDH---------VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT 312 (433)
T ss_pred ceehhhhhh-cccc---------hhh-ccc---------ceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH
Confidence 999987621 1100 000 010 12346788999999999999999999997654432222211
Q ss_pred CCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 877 GKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 877 g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
-.++.-.++...-|....++.++...|+.+.-+..
T Consensus 313 ------------kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 313 ------------KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred ------------hhhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence 14566777777777777788777777877765554
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.1 Score=62.98 Aligned_cols=263 Identities=18% Similarity=0.272 Sum_probs=159.9
Q ss_pred CCCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCC
Q 001380 601 KFPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENH 679 (1089)
Q Consensus 601 ~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~ 679 (1089)
...-|+++.| ..-..++.-.++.|..||-. |..+..+... || -..||+|+|++- |||+....-
T Consensus 10 sRvKglsFHP-~rPwILtslHsG~IQlWDYRM~tli~rFdeH------dG--------pVRgv~FH~~qp-lFVSGGDDy 73 (1202)
T KOG0292|consen 10 SRVKGLSFHP-KRPWILTSLHSGVIQLWDYRMGTLIDRFDEH------DG--------PVRGVDFHPTQP-LFVSGGDDY 73 (1202)
T ss_pred ccccceecCC-CCCEEEEeecCceeeeehhhhhhHHhhhhcc------CC--------ccceeeecCCCC-eEEecCCcc
Confidence 4456788887 44455555567899999876 6666665443 22 348999999998 999998889
Q ss_pred EEEEEECCCCe-EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC-CcEEEEEECCCCeEEEE-eCC
Q 001380 680 ALREIDFVNDT-VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG-QHQIWEHSTVDGVTRAF-SGD 756 (1089)
Q Consensus 680 ~I~~~d~~~g~-v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~-~~~I~~~~~~~g~~~~~-~g~ 756 (1089)
.|.+++.+... +-++-| ++.+-+-+.|++. +=||..+. ...|+.|+-.++.+... .|.
T Consensus 74 kIkVWnYk~rrclftL~G-----------------HlDYVRt~~FHhe--yPWIlSASDDQTIrIWNwqsr~~iavltGH 134 (1202)
T KOG0292|consen 74 KIKVWNYKTRRCLFTLLG-----------------HLDYVRTVFFHHE--YPWILSASDDQTIRIWNWQSRKCIAVLTGH 134 (1202)
T ss_pred EEEEEecccceehhhhcc-----------------ccceeEEeeccCC--CceEEEccCCCeEEEEeccCCceEEEEecC
Confidence 99999987644 333332 2345566667653 44544444 34577777777765544 332
Q ss_pred CccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecC---CCCCCC--CccccCCCCCcc
Q 001380 757 GYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGG---DPIFPD--NLFKFGDRDGMG 831 (1089)
Q Consensus 757 g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~---~~~~~~--~l~~~g~~dg~~ 831 (1089)
.. .-..-.++|.. .+.|+-+-..+||++|..+-..+..+.+ +.+.+. +---||..|..-
T Consensus 135 nH---------------YVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVV 198 (1202)
T KOG0292|consen 135 NH---------------YVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVV 198 (1202)
T ss_pred ce---------------EEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeee
Confidence 21 12233466755 7888888899999999875444444332 000000 001233333222
Q ss_pred ccccccCceEE---EEccCCcEEEEeCCCCEEE--EEeCCCC--eEEEEeccCCCCCCCCcccccccCCCceEEEccCCc
Q 001380 832 SEVLLQHPLGV---YCAKNGQIYVADSYNHKIK--KLDPASN--RVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN 904 (1089)
Q Consensus 832 ~~~~l~~P~gv---a~~~~G~lyVaD~~n~~I~--~~d~~~~--~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~ 904 (1089)
-...-.|-.|| ++-|.--++|+......|+ +++. ++ ++.|.-| .++.-+++.+++.-+
T Consensus 199 K~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmne-tKaWEvDtcrg--------------H~nnVssvlfhp~q~ 263 (1202)
T KOG0292|consen 199 KHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE-TKAWEVDTCRG--------------HYNNVSSVLFHPHQD 263 (1202)
T ss_pred eeeecccccccceEEecCCcceEEecCCcceeeEEEecc-ccceeehhhhc--------------ccCCcceEEecCccc
Confidence 22222344444 3334446888776665554 4442 22 1222222 577788999999888
Q ss_pred EEEEECCCCEEEEEeCCCCCceEEEE
Q 001380 905 LFIADTNNNIIRYLDLNKEEPELQTL 930 (1089)
Q Consensus 905 lyVad~~n~~I~~~~~~~~~~~~~~l 930 (1089)
+.++......|+++++...+ .+.+.
T Consensus 264 lIlSnsEDksirVwDm~kRt-~v~tf 288 (1202)
T KOG0292|consen 264 LILSNSEDKSIRVWDMTKRT-SVQTF 288 (1202)
T ss_pred eeEecCCCccEEEEeccccc-ceeee
Confidence 99999999999999998874 34443
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.26 Score=55.53 Aligned_cols=200 Identities=15% Similarity=0.191 Sum_probs=103.0
Q ss_pred CCeEE-EEeC-CCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCC
Q 001380 612 NNRLF-ISDS-NHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVND 689 (1089)
Q Consensus 612 ~g~L~-vsd~-~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g 689 (1089)
++++| ++|. +-+.|+.+|.+|+-++.=... .| ..|.. .+.+|++|.+.. .+-|+.+|+++.
T Consensus 235 ~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnF-----td--------YY~R~--~nsDGkrIvFq~--~GdIylydP~td 297 (668)
T COG4946 235 GERVYFLSDHEGVGNLYSVDLDGKDLRRHTNF-----TD--------YYPRN--ANSDGKRIVFQN--AGDIYLYDPETD 297 (668)
T ss_pred cceEEEEecccCccceEEeccCCchhhhcCCc-----hh--------ccccc--cCCCCcEEEEec--CCcEEEeCCCcC
Confidence 45666 6765 457899999999877642111 10 12222 122444444433 334555555555
Q ss_pred eEEEEecCCCCCCCCCCCCcccccccCCc----eeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCC
Q 001380 690 TVRTLAGNGTKGSDYQGGEKGTSQLLNSP----WDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGS 765 (1089)
Q Consensus 690 ~v~~~ag~g~~~~~~~~~~~~~~~~l~~P----~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~ 765 (1089)
.++.+-- |-.-. .......+..| .+.++.+ |+.+-.. ..++.+.+++..+.+..+...+...
T Consensus 298 ~lekldI-~lpl~-----rk~k~~k~~~pskyledfa~~~-Gd~ia~V--SRGkaFi~~~~~~~~iqv~~~~~Vr----- 363 (668)
T COG4946 298 SLEKLDI-GLPLD-----RKKKQPKFVNPSKYLEDFAVVN-GDYIALV--SRGKAFIMRPWDGYSIQVGKKGGVR----- 363 (668)
T ss_pred cceeeec-CCccc-----cccccccccCHHHhhhhhccCC-CcEEEEE--ecCcEEEECCCCCeeEEcCCCCceE-----
Confidence 5444421 10000 00011112222 2333332 3233222 3466777777766655554222110
Q ss_pred CCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEc
Q 001380 766 SSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCA 845 (1089)
Q Consensus 766 ~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~ 845 (1089)
-.-+..++ +.+.+.+.....+-+++..++.++.+.++ |..-..|.++
T Consensus 364 ---------Y~r~~~~~--e~~vigt~dgD~l~iyd~~~~e~kr~e~~----------------------lg~I~av~vs 410 (668)
T COG4946 364 ---------YRRIQVDP--EGDVIGTNDGDKLGIYDKDGGEVKRIEKD----------------------LGNIEAVKVS 410 (668)
T ss_pred ---------EEEEccCC--cceEEeccCCceEEEEecCCceEEEeeCC----------------------ccceEEEEEc
Confidence 11122222 24555565666777777777776665442 3455678888
Q ss_pred cCCcEEEEeCCCCEEEEEeCCCCeEEEEec
Q 001380 846 KNGQIYVADSYNHKIKKLDPASNRVSTLAG 875 (1089)
Q Consensus 846 ~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g 875 (1089)
++|+-.|+...+..|.++|.+++.++.+..
T Consensus 411 ~dGK~~vvaNdr~el~vididngnv~~idk 440 (668)
T COG4946 411 PDGKKVVVANDRFELWVIDIDNGNVRLIDK 440 (668)
T ss_pred CCCcEEEEEcCceEEEEEEecCCCeeEecc
Confidence 898755555567888899988888877753
|
|
| >TIGR01497 kdpB K+-transporting ATPase, B subunit | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0039 Score=76.41 Aligned_cols=106 Identities=16% Similarity=0.213 Sum_probs=76.2
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEE
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECI 243 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v 243 (1089)
.++.||+++.+++|+++|+++.++|+.+...+..+.+++|++ ++ +.. .. |+--...++++.-.-+.+.
T Consensus 445 D~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~lGI~-~v----~a~-----~~--PedK~~~v~~lq~~g~~Va 512 (675)
T TIGR01497 445 DIVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVD-DF----IAE-----AT--PEDKIALIRQEQAEGKLVA 512 (675)
T ss_pred ccchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC-EE----EcC-----CC--HHHHHHHHHHHHHcCCeEE
Confidence 367899999999999999999999999999999999999996 32 221 22 3333344444433445799
Q ss_pred EEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecC
Q 001380 244 VIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKE 285 (1089)
Q Consensus 244 ~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~d 285 (1089)
|+||+.||..+.+.++ +++..+...+..+ ..+|++.-|
T Consensus 513 mvGDG~NDapAL~~Ad---vGiAm~~gt~~ak-eaadivLld 550 (675)
T TIGR01497 513 MTGDGTNDAPALAQAD---VGVAMNSGTQAAK-EAANMVDLD 550 (675)
T ss_pred EECCCcchHHHHHhCC---EeEEeCCCCHHHH-HhCCEEECC
Confidence 9999999999999999 4444443222222 245666543
|
One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR. |
| >PRK14010 potassium-transporting ATPase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0049 Score=75.63 Aligned_cols=106 Identities=11% Similarity=0.161 Sum_probs=80.7
Q ss_pred CCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcE
Q 001380 163 SGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSEC 242 (1089)
Q Consensus 163 ~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~ 242 (1089)
..++.|++++.+++||+.|+++.++|+.+......+.+++|++ ++ +. .-.|+--.++.+.++-.-+-+
T Consensus 439 ~Dp~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~-~v----~A-------~~~PedK~~iV~~lQ~~G~~V 506 (673)
T PRK14010 439 KDVIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVD-RF----VA-------ECKPEDKINVIREEQAKGHIV 506 (673)
T ss_pred ecCCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCc-eE----Ec-------CCCHHHHHHHHHHHHhCCCEE
Confidence 3467899999999999999999999999999999999999996 32 21 223455556666665555679
Q ss_pred EEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEec
Q 001380 243 IVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRK 284 (1089)
Q Consensus 243 v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~ 284 (1089)
.|+||+.||.-+.++|. ++|..|.. .+.....+|.|.-
T Consensus 507 aMtGDGvNDAPALa~AD---VGIAMgsG-TdvAkeAADiVLl 544 (673)
T PRK14010 507 AMTGDGTNDAPALAEAN---VGLAMNSG-TMSAKEAANLIDL 544 (673)
T ss_pred EEECCChhhHHHHHhCC---EEEEeCCC-CHHHHHhCCEEEc
Confidence 99999999999999998 56666632 2333335777764
|
|
| >TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0036 Score=53.54 Aligned_cols=72 Identities=25% Similarity=0.338 Sum_probs=44.8
Q ss_pred EEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhCCCce
Q 001380 457 VLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSW 536 (1089)
Q Consensus 457 ll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~ 536 (1089)
+..|+++||++|+...+.|.+ .++.+.-+.+ +++.+.. .++.+.+++.++
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~~i~~~~vdi-----~~~~~~~------------------~~~~~~~~~~~v 51 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------KGIAFEEIDV-----EKDSAAR------------------EEVLKVLGQRGV 51 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------CCCeEEEEec-----cCCHHHH------------------HHHHHHhCCCcc
Confidence 457899999999998887754 2455555533 1111111 235667899999
Q ss_pred eEEEEECCCCcEEEEecCCCchhhHHHHH
Q 001380 537 PTFAVVGPNGKLLAQLAGEGHRKDLDDLV 565 (1089)
Q Consensus 537 Pt~~lid~~G~i~~~~~G~~~~~~l~~~l 565 (1089)
|++++ + |++ ..| .+.+.+.++|
T Consensus 52 P~~~~-~--~~~---~~g-~~~~~i~~~i 73 (74)
T TIGR02196 52 PVIVI-G--HKI---IVG-FDPEKLDQLL 73 (74)
T ss_pred cEEEE-C--CEE---Eee-CCHHHHHHHh
Confidence 98876 3 554 444 3556666554
|
This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system. |
| >PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.012 Score=70.47 Aligned_cols=122 Identities=18% Similarity=0.348 Sum_probs=77.3
Q ss_pred CCCCCCCceEEEeecCCeEEEEeCCCC-------------------EEEEEeCCCC-------EEEEEecCCCCC----C
Q 001380 597 TSPLKFPGKLAIDILNNRLFISDSNHN-------------------RIVVTDLDGN-------FIVQIGSSGEEG----L 646 (1089)
Q Consensus 597 ~~~l~~P~~vavd~~~g~L~vsd~~~~-------------------~I~~~~~~g~-------~~~~i~~~g~~g----~ 646 (1089)
++.+..|.++++++.++.+|++-+++. +|+++++++. ....+-..+... .
T Consensus 346 AT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~ 425 (524)
T PF05787_consen 346 ATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGN 425 (524)
T ss_pred cccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccc
Confidence 578999999999999999999977655 7999987754 222211111111 1
Q ss_pred CCCCCCccccCCcceeEEeeCCCEEEEE-ECCCCE--EEEEE--------------------CCCCeEEEEecCCCCCCC
Q 001380 647 RDGSFDDATFNRPQGLAYNAKKNLLYVA-DTENHA--LREID--------------------FVNDTVRTLAGNGTKGSD 703 (1089)
Q Consensus 647 ~dG~~~~~~f~~P~gla~d~~g~~lyVa-D~~n~~--I~~~d--------------------~~~g~v~~~ag~g~~~~~ 703 (1089)
..+......|.+|.+|+++++|+ |||+ |..++. |.... +..+.++.+.. +..
T Consensus 426 ~~~~~~~~~f~sPDNL~~d~~G~-LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~-~P~--- 500 (524)
T PF05787_consen 426 GSNKCDDNGFASPDNLAFDPDGN-LWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLV-GPN--- 500 (524)
T ss_pred ccCcccCCCcCCCCceEECCCCC-EEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeecc-CCC---
Confidence 12234456799999999999999 6665 665543 22221 22233333331 111
Q ss_pred CCCCCcccccccCCceeEEEecCCCEEEEEE
Q 001380 704 YQGGEKGTSQLLNSPWDVCYKPINEKVYIAM 734 (1089)
Q Consensus 704 ~~~~~~~~~~~l~~P~~la~~~~g~~lyvad 734 (1089)
=....|++++|+++.|||.-
T Consensus 501 -----------gaE~tG~~fspDg~tlFvni 520 (524)
T PF05787_consen 501 -----------GAEITGPCFSPDGRTLFVNI 520 (524)
T ss_pred -----------CcccccceECCCCCEEEEEE
Confidence 12467899999999999864
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.76 Score=55.08 Aligned_cols=260 Identities=17% Similarity=0.189 Sum_probs=131.8
Q ss_pred CCeEEEEeC----CCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECC
Q 001380 612 NNRLFISDS----NHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFV 687 (1089)
Q Consensus 612 ~g~L~vsd~----~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~ 687 (1089)
.+.||+... ..+..+.+|.+|.+...+...... -..+-..++|+ +++... +.++++|+.
T Consensus 113 ~~gl~~~~~~~~~~~~~~~~iD~~G~Vrw~~~~~~~~--------------~~~~~~l~nG~-ll~~~~--~~~~e~D~~ 175 (477)
T PF05935_consen 113 EDGLYFVNGNDWDSSSYTYLIDNNGDVRWYLPLDSGS--------------DNSFKQLPNGN-LLIGSG--NRLYEIDLL 175 (477)
T ss_dssp TT-EEEEEETT--BEEEEEEEETTS-EEEEE-GGGT----------------SSEEE-TTS--EEEEEB--TEEEEE-TT
T ss_pred CCcEEEEeCCCCCCCceEEEECCCccEEEEEccCccc--------------cceeeEcCCCC-EEEecC--CceEEEcCC
Confidence 344554444 456788999999998776554211 01166778888 444442 899999998
Q ss_pred CCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC-------C-----CcEEEEEECCCCeEEEEeC
Q 001380 688 NDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA-------G-----QHQIWEHSTVDGVTRAFSG 755 (1089)
Q Consensus 688 ~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~-------~-----~~~I~~~~~~~g~~~~~~g 755 (1089)
+..+....-.+.. ...-+++...|+|+.|+.+.. . ...|..+|..+..+..+.-
T Consensus 176 G~v~~~~~l~~~~--------------~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~ 241 (477)
T PF05935_consen 176 GKVIWEYDLPGGY--------------YDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDF 241 (477)
T ss_dssp --EEEEEE--TTE--------------E-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEG
T ss_pred CCEEEeeecCCcc--------------cccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEeh
Confidence 7765554321110 113578889999987777762 1 3468899944444445543
Q ss_pred CCcc-ccCC--------CCC---CCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCC---
Q 001380 756 DGYE-RNLN--------GSS---SLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDN--- 820 (1089)
Q Consensus 756 ~g~~-~~~~--------g~~---~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~--- 820 (1089)
.... ..+. +.. ....-..+-++|..++.++.|+++-...+.|.+++..++.+..+.|....+...
T Consensus 242 ~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~~~~~ 321 (477)
T PF05935_consen 242 FDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNGTYQD 321 (477)
T ss_dssp GGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--TTTGG
T ss_pred HHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCcccch
Confidence 2211 1111 000 011223456799999966699999999999999998888888777753333322
Q ss_pred -ccccCCCCC------ccccccccCceEEEEccCC---cEEEEeCCCC----------------EE--EEEeCCCCeEEE
Q 001380 821 -LFKFGDRDG------MGSEVLLQHPLGVYCAKNG---QIYVADSYNH----------------KI--KKLDPASNRVST 872 (1089)
Q Consensus 821 -l~~~g~~dg------~~~~~~l~~P~gva~~~~G---~lyVaD~~n~----------------~I--~~~d~~~~~v~t 872 (1089)
++..-+.+| ......+...+.+.+-++| +|+|=|.+++ |+ +++|.+.++++.
T Consensus 322 ~ll~~vd~~G~~~~~~~~~~~~~~gQH~~~~~~~g~~~~l~vFDNg~~r~~~~~~~~~~~~~~Sr~v~Y~Ide~~~T~~~ 401 (477)
T PF05935_consen 322 YLLTPVDSNGNPIDCGDGDFDWFWGQHTAHLIPDGPQGNLLVFDNGNGRGYGQPAYVSPKDNYSRAVEYRIDENKMTVEQ 401 (477)
T ss_dssp GB-EEB-TTS-B-EBSSSS----SS-EEEEE-TTS---SEEEEE--TTGGGS--SSCCG-----EEEEEEEETTTTEEEE
T ss_pred heeeeeccCCceeeccCCCCcccccccceEEcCCCCeEEEEEEECCCCCCCCCccccccccccceEEEEEecCCCceEEE
Confidence 222211111 1122233456788888899 9999886532 34 457888888888
Q ss_pred EeccCCCCCCCCcccccccCCCc--eEEEccC-CcEEEEE
Q 001380 873 LAGIGKAGFKDGAALAAQLSEPA--GIIEAQN-GNLFIAD 909 (1089)
Q Consensus 873 ~~g~g~~g~~~g~~~~~~l~~P~--gi~vd~~-G~lyVad 909 (1089)
+...+... | ..+.+|. ++..-++ |+++|..
T Consensus 402 vw~y~~~~---g----~~~yS~~~s~aq~l~n~gn~li~~ 434 (477)
T PF05935_consen 402 VWEYGKPR---G----NEFYSPIVSSAQYLPNKGNTLITS 434 (477)
T ss_dssp EEEESGGG---G----GGG--SS--EEEEETTTTEEEEEE
T ss_pred EEEeCCCC---C----CCccCCcceeeEEecCCCCEEEEe
Confidence 87654431 1 1233332 3344456 7766654
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.17 Score=57.29 Aligned_cols=227 Identities=13% Similarity=0.209 Sum_probs=139.3
Q ss_pred eEEEeecCCeEEEEeCCCCEEEEEeCCCCE-EEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEE
Q 001380 605 KLAIDILNNRLFISDSNHNRIVVTDLDGNF-IVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALRE 683 (1089)
Q Consensus 605 ~vavd~~~g~L~vsd~~~~~I~~~~~~g~~-~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~ 683 (1089)
++.+-. +|+|+.+.-..|-|.++|...+. ++.+... . .--+-+-+.++++.+++.......++.
T Consensus 73 s~~fR~-DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah-~-------------apv~~~~f~~~d~t~l~s~sDd~v~k~ 137 (487)
T KOG0310|consen 73 SVDFRS-DGRLLAAGDESGHVKVFDMKSRVILRQLYAH-Q-------------APVHVTKFSPQDNTMLVSGSDDKVVKY 137 (487)
T ss_pred EEEeec-CCeEEEccCCcCcEEEeccccHHHHHHHhhc-c-------------CceeEEEecccCCeEEEecCCCceEEE
Confidence 456654 78888887777889999854432 2233222 1 122556667788888888777778888
Q ss_pred EECCCCeEE-EEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCe--EEEEeCCCccc
Q 001380 684 IDFVNDTVR-TLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGV--TRAFSGDGYER 760 (1089)
Q Consensus 684 ~d~~~g~v~-~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~--~~~~~g~g~~~ 760 (1089)
+|.++..+. .+.+.- .+-...++.|.++.++++....|.|+-||..... +..+.
T Consensus 138 ~d~s~a~v~~~l~~ht-----------------DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln------ 194 (487)
T KOG0310|consen 138 WDLSTAYVQAELSGHT-----------------DYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN------ 194 (487)
T ss_pred EEcCCcEEEEEecCCc-----------------ceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec------
Confidence 899888874 222211 2556778888888999999999999999976543 22222
Q ss_pred cCCCCCCCCccccCC-ceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCc
Q 001380 761 NLNGSSSLNTSFAQP-SGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHP 839 (1089)
Q Consensus 761 ~~~g~~~~~~~~~~P-~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P 839 (1089)
-.+| ..+..-|.| .++++ .+.+.|+++|+.+|...+. .++.. -..-
T Consensus 195 -----------hg~pVe~vl~lpsg-s~ias-AgGn~vkVWDl~~G~qll~------------~~~~H--------~KtV 241 (487)
T KOG0310|consen 195 -----------HGCPVESVLALPSG-SLIAS-AGGNSVKVWDLTTGGQLLT------------SMFNH--------NKTV 241 (487)
T ss_pred -----------CCCceeeEEEcCCC-CEEEE-cCCCeEEEEEecCCceehh------------hhhcc--------cceE
Confidence 0122 133333444 45444 3557899999886554322 11100 1123
Q ss_pred eEEEEccCCcEEEEeCCCCEEEEEeCCCCe-EEEEeccCCCCCCCCcccccccCC-CceEEEccCCcEEEEECCCCEEEE
Q 001380 840 LGVYCAKNGQIYVADSYNHKIKKLDPASNR-VSTLAGIGKAGFKDGAALAAQLSE-PAGIIEAQNGNLFIADTNNNIIRY 917 (1089)
Q Consensus 840 ~gva~~~~G~lyVaD~~n~~I~~~d~~~~~-v~t~~g~g~~g~~~g~~~~~~l~~-P~gi~vd~~G~lyVad~~n~~I~~ 917 (1089)
.++.+..++.-.++-+-.+.+++||..+-. +..+. +.. -..|++.+++.-.|+...|+.+..
T Consensus 242 TcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~----------------~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 242 TCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK----------------YPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred EEEEeecCCceEeecccccceEEEEccceEEEEeee----------------cccceeeEEecCCCceEEEecccceeee
Confidence 556666778877887888999999943322 22221 111 235778877777777777776654
Q ss_pred E
Q 001380 918 L 918 (1089)
Q Consensus 918 ~ 918 (1089)
-
T Consensus 306 r 306 (487)
T KOG0310|consen 306 R 306 (487)
T ss_pred e
Confidence 3
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.46 Score=55.67 Aligned_cols=233 Identities=15% Similarity=0.129 Sum_probs=124.3
Q ss_pred CCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCe
Q 001380 612 NNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDT 690 (1089)
Q Consensus 612 ~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~ 690 (1089)
++.+||.. ++++|+.+|.+ |+.+......... . .......| ++. ++ .+|+.. .++.+..+|.++|.
T Consensus 160 ~~~v~v~~-~~g~l~ald~~tG~~~W~~~~~~~~-~-----~~~~~~sP---~v~-~~-~v~~~~-~~g~v~a~d~~~G~ 226 (394)
T PRK11138 160 DGLVLVHT-SNGMLQALNESDGAVKWTVNLDVPS-L-----TLRGESAP---ATA-FG-GAIVGG-DNGRVSAVLMEQGQ 226 (394)
T ss_pred CCEEEEEC-CCCEEEEEEccCCCEeeeecCCCCc-c-----cccCCCCC---EEE-CC-EEEEEc-CCCEEEEEEccCCh
Confidence 67788765 46789999984 8888766443110 0 00001233 232 23 377764 46788899988876
Q ss_pred EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCc
Q 001380 691 VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNT 770 (1089)
Q Consensus 691 v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~ 770 (1089)
+.--...+....... .........+|. +. ++.+|++.. .+.++.+|..+|....-...
T Consensus 227 ~~W~~~~~~~~~~~~--~~~~~~~~~sP~---v~--~~~vy~~~~-~g~l~ald~~tG~~~W~~~~-------------- 284 (394)
T PRK11138 227 LIWQQRISQPTGATE--IDRLVDVDTTPV---VV--GGVVYALAY-NGNLVALDLRSGQIVWKREY-------------- 284 (394)
T ss_pred hhheeccccCCCccc--hhcccccCCCcE---EE--CCEEEEEEc-CCeEEEEECCCCCEEEeecC--------------
Confidence 543221111000000 000000012332 22 458998774 57899999998875432211
Q ss_pred cccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcE
Q 001380 771 SFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQI 850 (1089)
Q Consensus 771 ~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~l 850 (1089)
..+..++++ +++||+.+. ++.++.++.++|....-.. ...+ .....|. + .+|.|
T Consensus 285 --~~~~~~~~~--~~~vy~~~~-~g~l~ald~~tG~~~W~~~-------------~~~~----~~~~sp~---v-~~g~l 338 (394)
T PRK11138 285 --GSVNDFAVD--GGRIYLVDQ-NDRVYALDTRGGVELWSQS-------------DLLH----RLLTAPV---L-YNGYL 338 (394)
T ss_pred --CCccCcEEE--CCEEEEEcC-CCeEEEEECCCCcEEEccc-------------ccCC----CcccCCE---E-ECCEE
Confidence 112234443 349999874 5789999998775432100 0000 0122332 2 26899
Q ss_pred EEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeC
Q 001380 851 YVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDL 920 (1089)
Q Consensus 851 yVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~ 920 (1089)
|+.+. ++.|..+|+++|++..-...+..+ ....| ++. +|+|||.+. ++.|..|++
T Consensus 339 ~v~~~-~G~l~~ld~~tG~~~~~~~~~~~~---------~~s~P---~~~-~~~l~v~t~-~G~l~~~~~ 393 (394)
T PRK11138 339 VVGDS-EGYLHWINREDGRFVAQQKVDSSG---------FLSEP---VVA-DDKLLIQAR-DGTVYAITR 393 (394)
T ss_pred EEEeC-CCEEEEEECCCCCEEEEEEcCCCc---------ceeCC---EEE-CCEEEEEeC-CceEEEEeC
Confidence 99874 578999999888754332111100 12223 333 568999864 567777764
|
|
| >PRK01122 potassium-transporting ATPase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0047 Score=75.84 Aligned_cols=105 Identities=15% Similarity=0.214 Sum_probs=78.4
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEE
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECI 243 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v 243 (1089)
.++.||+++.+++||++|+++.++|+.+......+.+++|++ ++ +. .-.|+--.+..++++-.-+-+.
T Consensus 444 D~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId-~v----~A-------~~~PedK~~iV~~lQ~~G~~Va 511 (679)
T PRK01122 444 DIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVD-DF----LA-------EATPEDKLALIRQEQAEGRLVA 511 (679)
T ss_pred ccCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCc-EE----Ec-------cCCHHHHHHHHHHHHHcCCeEE
Confidence 366899999999999999999999999999999999999996 32 22 1234455555666554446699
Q ss_pred EEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEec
Q 001380 244 VIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRK 284 (1089)
Q Consensus 244 ~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~ 284 (1089)
|+||+.||-.+.++|. ++|..|.. .+.....+|.|.-
T Consensus 512 MtGDGvNDAPALa~AD---VGIAMgsG-TdvAkeAADiVLl 548 (679)
T PRK01122 512 MTGDGTNDAPALAQAD---VGVAMNSG-TQAAKEAGNMVDL 548 (679)
T ss_pred EECCCcchHHHHHhCC---EeEEeCCC-CHHHHHhCCEEEe
Confidence 9999999999999998 55666532 2233334666654
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.68 Score=54.67 Aligned_cols=245 Identities=16% Similarity=0.161 Sum_probs=150.7
Q ss_pred eEEEeecCCeEEEEeCCCCEEEEEeCCCCEE--EEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEE
Q 001380 605 KLAIDILNNRLFISDSNHNRIVVTDLDGNFI--VQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALR 682 (1089)
Q Consensus 605 ~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~--~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~ 682 (1089)
.+|++..+++|-++.+ ++.|..|++..... ..+.++ +. .+-.+|++.+.|+ ||-++ .++.|-
T Consensus 30 slA~s~kS~~lAvsRt-~g~IEiwN~~~~w~~~~vi~g~-~d------------rsIE~L~W~e~~R-LFS~g-~sg~i~ 93 (691)
T KOG2048|consen 30 SLAYSHKSNQLAVSRT-DGNIEIWNLSNNWFLEPVIHGP-ED------------RSIESLAWAEGGR-LFSSG-LSGSIT 93 (691)
T ss_pred EEEEeccCCceeeecc-CCcEEEEccCCCceeeEEEecC-CC------------CceeeEEEccCCe-EEeec-CCceEE
Confidence 5778887888888876 57888888875533 244433 21 2568999985554 77776 588999
Q ss_pred EEECCCCeEEEEec-CCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCcccc
Q 001380 683 EIDFVNDTVRTLAG-NGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERN 761 (1089)
Q Consensus 683 ~~d~~~g~v~~~ag-~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~ 761 (1089)
.+|+.+++...-.. +| ..-|.++++|.+..+-|..- ++.+..++...+.++.-.--+
T Consensus 94 EwDl~~lk~~~~~d~~g-----------------g~IWsiai~p~~~~l~Igcd-dGvl~~~s~~p~~I~~~r~l~---- 151 (691)
T KOG2048|consen 94 EWDLHTLKQKYNIDSNG-----------------GAIWSIAINPENTILAIGCD-DGVLYDFSIGPDKITYKRSLM---- 151 (691)
T ss_pred EEecccCceeEEecCCC-----------------cceeEEEeCCccceEEeecC-CceEEEEecCCceEEEEeecc----
Confidence 99998877655432 22 25799999999877777622 235555555555554332111
Q ss_pred CCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceE
Q 001380 762 LNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLG 841 (1089)
Q Consensus 762 ~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~g 841 (1089)
-+-..--.|++++++ .=.++-+..+.|+.++...+....+..-. .|+... ..=.--++
T Consensus 152 --------rq~sRvLslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~------------~d~l~k-~~~~iVWS 209 (691)
T KOG2048|consen 152 --------RQKSRVLSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQTLHIITMQ------------LDRLSK-REPTIVWS 209 (691)
T ss_pred --------cccceEEEEEecCCc-cEEEecccCceEEEEEcCCCceEEEeeec------------cccccc-CCceEEEE
Confidence 111234578888887 54567777889999998866554322110 011000 00112467
Q ss_pred EEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCC
Q 001380 842 VYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLN 921 (1089)
Q Consensus 842 va~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~ 921 (1089)
|.+-.++.|.-.|+ .+.|...|...+++..-- ......-..|+++.+++-+++-....+|..+.+.
T Consensus 210 v~~Lrd~tI~sgDS-~G~V~FWd~~~gTLiqS~-------------~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~ 275 (691)
T KOG2048|consen 210 VLFLRDSTIASGDS-AGTVTFWDSIFGTLIQSH-------------SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLT 275 (691)
T ss_pred EEEeecCcEEEecC-CceEEEEcccCcchhhhh-------------hhhhcceeEEEEcCCCCeEEEccCCCceEEEEec
Confidence 77777777666664 578888887766442211 1122335678888776655555566788888887
Q ss_pred CC
Q 001380 922 KE 923 (1089)
Q Consensus 922 ~~ 923 (1089)
++
T Consensus 276 ~~ 277 (691)
T KOG2048|consen 276 TN 277 (691)
T ss_pred CC
Confidence 76
|
|
| >PLN02645 phosphoglycolate phosphatase | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0067 Score=68.41 Aligned_cols=90 Identities=16% Similarity=0.190 Sum_probs=70.5
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCC---hHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCc
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSAD---RIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSE 241 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~---~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~ 241 (1089)
.++||+.++|+.|+++|++++++||+. .......++++|+. ..++.|+++.. .....++..+....+
T Consensus 44 ~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~-~~~~~I~ts~~---------~~~~~l~~~~~~~~~ 113 (311)
T PLN02645 44 KLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLN-VTEEEIFSSSF---------AAAAYLKSINFPKDK 113 (311)
T ss_pred ccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCC-CChhhEeehHH---------HHHHHHHhhccCCCC
Confidence 568999999999999999999999987 44444556888996 66788887752 444556666664455
Q ss_pred EEEEcCChhhHHHHHHcCCeEEE
Q 001380 242 CIVIEDALAGVQAAKAAQMRCIA 264 (1089)
Q Consensus 242 ~v~VGD~~~Di~aA~~aG~~~i~ 264 (1089)
.++|+++..+.+.++++|+.++.
T Consensus 114 ~V~viG~~~~~~~l~~~Gi~~~~ 136 (311)
T PLN02645 114 KVYVIGEEGILEELELAGFQYLG 136 (311)
T ss_pred EEEEEcCHHHHHHHHHCCCEEec
Confidence 68888889999999999998764
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.093 Score=59.59 Aligned_cols=172 Identities=13% Similarity=0.120 Sum_probs=105.2
Q ss_pred eEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEE
Q 001380 605 KLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREI 684 (1089)
Q Consensus 605 ~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~ 684 (1089)
.+.+++ .|..+++-+++.+..++|.||..+..+-.+ ..-..|=..+.+....-+.-+++|.....|++-...+.+|.+
T Consensus 219 sl~ys~-Tg~~iLvvsg~aqakl~DRdG~~~~e~~KG-DQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiW 296 (641)
T KOG0772|consen 219 SLQYSV-TGDQILVVSGSAQAKLLDRDGFEIVEFSKG-DQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIW 296 (641)
T ss_pred eeeecC-CCCeEEEEecCcceeEEccCCceeeeeecc-chhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEE
Confidence 355665 455555666778888999999876654433 111222222233344556667888877788888888889988
Q ss_pred ECCCC--eEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccC
Q 001380 685 DFVND--TVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNL 762 (1089)
Q Consensus 685 d~~~g--~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~ 762 (1089)
+.++- ....+-..+..+. --.|...+|+++| .++.+...++.|..|+.-+-.+...---.
T Consensus 297 dv~~~k~q~qVik~k~~~g~------------Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~~~vk----- 358 (641)
T KOG0772|consen 297 DVNNTKSQLQVIKTKPAGGK------------RVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPVMKVK----- 358 (641)
T ss_pred ecCCchhheeEEeeccCCCc------------ccCceeeecCCCc-chhhhcccCCceeeeecCCcccccceEee-----
Confidence 87652 2333322222111 1267889999998 55666666788887875332222110000
Q ss_pred CCCCCCCccc--cCCceEEEcCCCCEEEEEeCCCCeEEEEEcC
Q 001380 763 NGSSSLNTSF--AQPSGISLSPDFMEIYVADSESSSIRALNLK 803 (1089)
Q Consensus 763 ~g~~~~~~~~--~~P~glav~~~g~~lyvad~~~~~I~~~~~~ 803 (1089)
.+.. ..-+.|++++|| +...+-.+.+++..+++.
T Consensus 359 ------~AH~~g~~Itsi~FS~dg-~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 359 ------DAHLPGQDITSISFSYDG-NYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred ------eccCCCCceeEEEecccc-chhhhccCCCceeeeecc
Confidence 0111 135689999999 677788888899999887
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.056 Score=64.47 Aligned_cols=188 Identities=17% Similarity=0.274 Sum_probs=119.7
Q ss_pred eEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCc-ceeEEeeCCCEEEEEEC-CCCEEE
Q 001380 605 KLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRP-QGLAYNAKKNLLYVADT-ENHALR 682 (1089)
Q Consensus 605 ~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P-~gla~d~~g~~lyVaD~-~n~~I~ 682 (1089)
+..+.| +.++.++-+....+..|..+...-..+-.++. .| ..+.|.|.|. |+|-. ....-+
T Consensus 456 g~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~--------------~PVwdV~F~P~Gy--YFatas~D~tAr 518 (707)
T KOG0263|consen 456 GCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHL--------------APVWDVQFAPRGY--YFATASHDQTAR 518 (707)
T ss_pred eeeecc-cccceeeccCCcceeeeecccceeEEEecCCC--------------cceeeEEecCCce--EEEecCCCceee
Confidence 567887 78888998888888888887554433333211 23 3455667664 44433 233334
Q ss_pred EEECCC-CeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEE-ECCCcEEEEEECCCCe-EEEEeCCCcc
Q 001380 683 EIDFVN-DTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIA-MAGQHQIWEHSTVDGV-TRAFSGDGYE 759 (1089)
Q Consensus 683 ~~d~~~-g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyva-d~~~~~I~~~~~~~g~-~~~~~g~g~~ 759 (1089)
.+..+. .-.+.++| +++.-.-+.|+|+.+ |++ ....+.|+.||..+|. ++.|.|..
T Consensus 519 LWs~d~~~PlRifag-----------------hlsDV~cv~FHPNs~--Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~-- 577 (707)
T KOG0263|consen 519 LWSTDHNKPLRIFAG-----------------HLSDVDCVSFHPNSN--YVATGSSDRTVRLWDVSTGNSVRIFTGHK-- 577 (707)
T ss_pred eeecccCCchhhhcc-----------------cccccceEEECCccc--ccccCCCCceEEEEEcCCCcEEEEecCCC--
Confidence 444333 22333332 345566689999763 444 3456788889987764 56665432
Q ss_pred ccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCe-EEEecCCCCCCCCccccCCCCCccccccccC
Q 001380 760 RNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGS-RLLAGGDPIFPDNLFKFGDRDGMGSEVLLQH 838 (1089)
Q Consensus 760 ~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~-~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~ 838 (1089)
.--..|+++|+| +-.++-.+.+.|..+|..++.. ..+.+ +. ..
T Consensus 578 -------------~~V~al~~Sp~G-r~LaSg~ed~~I~iWDl~~~~~v~~l~~-------------Ht---------~t 621 (707)
T KOG0263|consen 578 -------------GPVTALAFSPCG-RYLASGDEDGLIKIWDLANGSLVKQLKG-------------HT---------GT 621 (707)
T ss_pred -------------CceEEEEEcCCC-ceEeecccCCcEEEEEcCCCcchhhhhc-------------cc---------Cc
Confidence 124689999998 5556667889999999886433 22222 11 12
Q ss_pred ceEEEEccCCcEEEEeCCCCEEEEEeCC
Q 001380 839 PLGVYCAKNGQIYVADSYNHKIKKLDPA 866 (1089)
Q Consensus 839 P~gva~~~~G~lyVaD~~n~~I~~~d~~ 866 (1089)
-..+.++.+|.++|++..++.|+..|..
T Consensus 622 i~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 622 IYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred eeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 4568889999999999999999999863
|
|
| >PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.013 Score=70.23 Aligned_cols=123 Identities=23% Similarity=0.350 Sum_probs=76.5
Q ss_pred cccCCcceeEEeeCCCEEEEEECCCC-------------------EEEEEECCCC-------eEEEEecCCCCCCC-CCC
Q 001380 654 ATFNRPQGLAYNAKKNLLYVADTENH-------------------ALREIDFVND-------TVRTLAGNGTKGSD-YQG 706 (1089)
Q Consensus 654 ~~f~~P~gla~d~~g~~lyVaD~~n~-------------------~I~~~d~~~g-------~v~~~ag~g~~~~~-~~~ 706 (1089)
..|.+|.+|.++|....+|++-+.+. .|++++++++ ....+.-.|..... ...
T Consensus 347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~ 426 (524)
T PF05787_consen 347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG 426 (524)
T ss_pred ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence 46999999999998778999987665 7888887765 44444433321100 011
Q ss_pred CCcccccccCCceeEEEecCCCEEEEE-ECCCcEE----------------------EEEECCCCeEEEEeCCCccccCC
Q 001380 707 GEKGTSQLLNSPWDVCYKPINEKVYIA-MAGQHQI----------------------WEHSTVDGVTRAFSGDGYERNLN 763 (1089)
Q Consensus 707 ~~~~~~~~l~~P~~la~~~~g~~lyva-d~~~~~I----------------------~~~~~~~g~~~~~~g~g~~~~~~ 763 (1089)
........|++|..|+|++.| .|||+ |.+.+.. +..++..+.+.+|...
T Consensus 427 ~~~~~~~~f~sPDNL~~d~~G-~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~------- 498 (524)
T PF05787_consen 427 SNKCDDNGFASPDNLAFDPDG-NLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVG------- 498 (524)
T ss_pred cCcccCCCcCCCCceEECCCC-CEEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccC-------
Confidence 222335568999999999988 56765 4444331 1122233333333310
Q ss_pred CCCCCCccccCCceEEEcCCCCEEEEE
Q 001380 764 GSSSLNTSFAQPSGISLSPDFMEIYVA 790 (1089)
Q Consensus 764 g~~~~~~~~~~P~glav~~~g~~lyva 790 (1089)
..-+...|++++||++.|||.
T Consensus 499 ------P~gaE~tG~~fspDg~tlFvn 519 (524)
T PF05787_consen 499 ------PNGAEITGPCFSPDGRTLFVN 519 (524)
T ss_pred ------CCCcccccceECCCCCEEEEE
Confidence 111345799999999999985
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.43 Score=51.27 Aligned_cols=205 Identities=14% Similarity=0.179 Sum_probs=121.5
Q ss_pred CCCCCCCCCceEE--EeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEE
Q 001380 595 LFTSPLKFPGKLA--IDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLY 672 (1089)
Q Consensus 595 ~~~~~l~~P~~va--vd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~ly 672 (1089)
.....|..|...+ +++ .|.+....-.+|||+++|.+..-+..+-+. ...--+.|+.+++|+ ..
T Consensus 16 el~~tld~~~a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~iar~lsa-------------H~~pi~sl~WS~dgr-~L 80 (405)
T KOG1273|consen 16 ELTHTLDNPLAECCQFSR-WGDYLAVGCANGRVVIYDFDTFRIARMLSA-------------HVRPITSLCWSRDGR-KL 80 (405)
T ss_pred hhceeccCCccceEEecc-CcceeeeeccCCcEEEEEccccchhhhhhc-------------cccceeEEEecCCCC-Ee
Confidence 3445566666444 454 677777777889999999876544322221 112348999999999 55
Q ss_pred EEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCc-eeEEEecCCCEEEEEECCC--cEEEEEECCCCe
Q 001380 673 VADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSP-WDVCYKPINEKVYIAMAGQ--HQIWEHSTVDGV 749 (1089)
Q Consensus 673 VaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P-~~la~~~~g~~lyvad~~~--~~I~~~~~~~g~ 749 (1089)
++-.....|..+|+..|..-.- ..|++| |+.-++|...+..|+..-. -.+..++ +++
T Consensus 81 ltsS~D~si~lwDl~~gs~l~r------------------irf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s--~~~ 140 (405)
T KOG1273|consen 81 LTSSRDWSIKLWDLLKGSPLKR------------------IRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFS--DPK 140 (405)
T ss_pred eeecCCceeEEEeccCCCceeE------------------EEccCccceeeeccccCCeEEEEEecCCcEEEEec--CCc
Confidence 6656677899999866542222 225566 7888998887776664332 3333333 333
Q ss_pred EEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCC
Q 001380 750 TRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDG 829 (1089)
Q Consensus 750 ~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg 829 (1089)
-+.+..+. ++... ..++...+++.|+++|...+ .+.+..++..+-.. ++.- -
T Consensus 141 h~~Lp~d~-----d~dln-----~sas~~~fdr~g~yIitGts-KGkllv~~a~t~e~--vas~-----------r---- 192 (405)
T KOG1273|consen 141 HSVLPKDD-----DGDLN-----SSASHGVFDRRGKYIITGTS-KGKLLVYDAETLEC--VASF-----------R---- 192 (405)
T ss_pred eeeccCCC-----ccccc-----cccccccccCCCCEEEEecC-cceEEEEecchhee--eeee-----------e----
Confidence 33333211 11100 12333467888867766554 57788887664322 2110 0
Q ss_pred ccccccccCceEEEEccCCcEEEEeCCCCEEEEEeC
Q 001380 830 MGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDP 865 (1089)
Q Consensus 830 ~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~ 865 (1089)
....+.-..|-+.-.|..++.++....|+.++.
T Consensus 193 ---its~~~IK~I~~s~~g~~liiNtsDRvIR~ye~ 225 (405)
T KOG1273|consen 193 ---ITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEI 225 (405)
T ss_pred ---echheeeeEEEEeccCcEEEEecCCceEEEEeh
Confidence 000234556777778999999998888888874
|
|
| >KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.015 Score=70.96 Aligned_cols=85 Identities=15% Similarity=0.200 Sum_probs=63.8
Q ss_pred CCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcE
Q 001380 163 SGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSEC 242 (1089)
Q Consensus 163 ~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~ 242 (1089)
...+.|++...+..||++|++++.+|+.+...++.+.+++|++ .+++. .+|... ....+++.-....+
T Consensus 721 ~D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA~~VGi~-----~V~ae-----v~P~~K--~~~Ik~lq~~~~~V 788 (951)
T KOG0207|consen 721 EDQVRPDAALAVAELKSMGIKVVMLTGDNDAAARSVAQQVGID-----NVYAE-----VLPEQK--AEKIKEIQKNGGPV 788 (951)
T ss_pred ccccchhHHHHHHHHHhcCceEEEEcCCCHHHHHHHHHhhCcc-----eEEec-----cCchhh--HHHHHHHHhcCCcE
Confidence 3467899999999999999999999999999999999999965 33332 233221 22333443333669
Q ss_pred EEEcCChhhHHHHHHcC
Q 001380 243 IVIEDALAGVQAAKAAQ 259 (1089)
Q Consensus 243 v~VGD~~~Di~aA~~aG 259 (1089)
.||||+.||--+...|.
T Consensus 789 aMVGDGINDaPALA~Ad 805 (951)
T KOG0207|consen 789 AMVGDGINDAPALAQAD 805 (951)
T ss_pred EEEeCCCCccHHHHhhc
Confidence 99999999977776665
|
|
| >PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0065 Score=65.90 Aligned_cols=111 Identities=17% Similarity=0.235 Sum_probs=68.0
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCCh-----------hcHH-HHHHHHHHcCC---c
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNE-----------KDLE-AIRNAVLRYGI---S 516 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~-----------~~~~-~~~~~~~~~~~---~ 516 (1089)
.+|.+|+.|.-+-||+|++.++++.++.+. . ++.+.-+-++-...+ ++++ .|..+...+.. .
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g--~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~ 192 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS-G--KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLK 192 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc-C--ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCC
Confidence 578899999999999999999999887654 1 244333322111111 1111 12222111111 1
Q ss_pred cce--------eecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHH
Q 001380 517 HPV--------VNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVE 566 (1089)
Q Consensus 517 ~~v--------~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~ 566 (1089)
-+. ..+.+.++++++||+++|++|+.|.+|++ ....|....+++.+.+.
T Consensus 193 ~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~-~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 193 PPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTL-QQVVGLPDPAQLAEIMG 249 (251)
T ss_pred ccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE-EEecCCCCHHHHHHHhC
Confidence 110 11234568889999999999999999965 34567777888877653
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.14 Score=54.84 Aligned_cols=199 Identities=14% Similarity=0.191 Sum_probs=124.6
Q ss_pred ceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcE
Q 001380 660 QGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQ 739 (1089)
Q Consensus 660 ~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~ 739 (1089)
..+.|++.|. +......|++|..+|..+..+..+.+.- ..--..++|+++| +..++......
T Consensus 27 ~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar~lsaH----------------~~pi~sl~WS~dg-r~LltsS~D~s 88 (405)
T KOG1273|consen 27 ECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIARMLSAH----------------VRPITSLCWSRDG-RKLLTSSRDWS 88 (405)
T ss_pred ceEEeccCcc-eeeeeccCCcEEEEEccccchhhhhhcc----------------ccceeEEEecCCC-CEeeeecCCce
Confidence 4566777887 3344556899999998875544443211 1223679999998 67777777888
Q ss_pred EEEEECCCCeEE-EEeCCCccccCCCCCCCCccccCC-ceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCC
Q 001380 740 IWEHSTVDGVTR-AFSGDGYERNLNGSSSLNTSFAQP-SGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIF 817 (1089)
Q Consensus 740 I~~~~~~~g~~~-~~~g~g~~~~~~g~~~~~~~~~~P-~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~ 817 (1089)
|..||...|.+. .+ .|..| .+..+.|...+.+|+.....+=..++..+...+.+...+.
T Consensus 89 i~lwDl~~gs~l~ri-----------------rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d-- 149 (405)
T KOG1273|consen 89 IKLWDLLKGSPLKRI-----------------RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDD-- 149 (405)
T ss_pred eEEEeccCCCceeEE-----------------EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCc--
Confidence 989998766432 22 23333 3566677655677666554444555555444444443221
Q ss_pred CCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceE
Q 001380 818 PDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGI 897 (1089)
Q Consensus 818 ~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi 897 (1089)
|+.+. .+....+|+.|+..++.+..+++.++|..+-.+...-- .. ..+.-..|
T Consensus 150 -------~dln~--------sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~r--it----------s~~~IK~I 202 (405)
T KOG1273|consen 150 -------GDLNS--------SASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFR--IT----------SVQAIKQI 202 (405)
T ss_pred -------ccccc--------ccccccccCCCCEEEEecCcceEEEEecchheeeeeee--ec----------hheeeeEE
Confidence 22221 23334678999988888899999999976654322211 00 12334567
Q ss_pred EEccCCcEEEEECCCCEEEEEeCCC
Q 001380 898 IEAQNGNLFIADTNNNIIRYLDLNK 922 (1089)
Q Consensus 898 ~vd~~G~lyVad~~n~~I~~~~~~~ 922 (1089)
-+.-.|+.++.++....||.++...
T Consensus 203 ~~s~~g~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 203 IVSRKGRFLIINTSDRVIRTYEISD 227 (405)
T ss_pred EEeccCcEEEEecCCceEEEEehhh
Confidence 7777888899999999999988763
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.072 Score=58.86 Aligned_cols=154 Identities=14% Similarity=0.111 Sum_probs=104.8
Q ss_pred eeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEE
Q 001380 719 WDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIR 798 (1089)
Q Consensus 719 ~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~ 798 (1089)
.-|.|+|+.+ -.++......++.+|..+|.....-++|. -..++..++-||| .=+|+.+-...|.
T Consensus 273 ~yi~wSPDdr-yLlaCg~~e~~~lwDv~tgd~~~~y~~~~-------------~~S~~sc~W~pDg-~~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 273 SYIMWSPDDR-YLLACGFDEVLSLWDVDTGDLRHLYPSGL-------------GFSVSSCAWCPDG-FRFVTGSPDRTII 337 (519)
T ss_pred EEEEECCCCC-eEEecCchHheeeccCCcchhhhhcccCc-------------CCCcceeEEccCC-ceeEecCCCCcEE
Confidence 4588999884 44555556678999998888776654431 1246788999999 6688888888899
Q ss_pred EEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEEEeCCCCEEEEEeCCCCeEEEEeccC
Q 001380 799 ALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADSYNHKIKKLDPASNRVSTLAGIG 877 (1089)
Q Consensus 799 ~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~~n~~I~~~d~~~~~v~t~~g~g 877 (1089)
.++++++...... ..+.+.-..+++.+||. ++..+ ...+|+.++..+....-+...
T Consensus 338 ~wdlDgn~~~~W~---------------------gvr~~~v~dlait~Dgk~vl~v~-~d~~i~l~~~e~~~dr~lise- 394 (519)
T KOG0293|consen 338 MWDLDGNILGNWE---------------------GVRDPKVHDLAITYDGKYVLLVT-VDKKIRLYNREARVDRGLISE- 394 (519)
T ss_pred EecCCcchhhccc---------------------ccccceeEEEEEcCCCcEEEEEe-cccceeeechhhhhhhccccc-
Confidence 9998864322111 11234567899999996 44444 556788777654332212111
Q ss_pred CCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 878 KAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 878 ~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
-..-+.+++..+|++.+++..++.|+..++...
T Consensus 395 -------------~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~ 427 (519)
T KOG0293|consen 395 -------------EQPITSFSISKDGKLALVNLQDQEIHLWDLEEN 427 (519)
T ss_pred -------------cCceeEEEEcCCCcEEEEEcccCeeEEeecchh
Confidence 122467889999999999999999999999854
|
|
| >TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0055 Score=79.50 Aligned_cols=122 Identities=16% Similarity=0.187 Sum_probs=86.0
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCcc----------------CCCCCHHH
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFE----------------NLKPAPDI 227 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~----------------~~KP~~~~ 227 (1089)
.++.|++.+.++.|+++|+++.++|+.+...+..+.+++|+. .--..++++++.. ...-.|+-
T Consensus 578 Dplr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA~~~GI~-~~~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~sPe~ 656 (941)
T TIGR01517 578 DPLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIARNCGIL-TFGGLAMEGKEFRRLVYEEMDPILPKLRVLARSSPLD 656 (941)
T ss_pred CCCchhHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCC-CCCceEeeHHHhhhCCHHHHHHHhccCeEEEECCHHH
Confidence 367899999999999999999999999999999999999994 3222344333211 12334444
Q ss_pred HHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEec--CcccC
Q 001380 228 FLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRK--EIGSV 289 (1089)
Q Consensus 228 ~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~--dl~el 289 (1089)
-.++.+.+.-.-+.+.|+||+.||..|-++|. |+|..|.+..+.....+|+++. +|..+
T Consensus 657 K~~iV~~lq~~g~vVam~GDGvNDapALk~Ad---VGIAmg~~gtdvAk~aADivL~dd~f~~I 717 (941)
T TIGR01517 657 KQLLVLMLKDMGEVVAVTGDGTNDAPALKLAD---VGFSMGISGTEVAKEASDIILLDDNFASI 717 (941)
T ss_pred HHHHHHHHHHCCCEEEEECCCCchHHHHHhCC---cceecCCCccHHHHHhCCEEEecCCHHHH
Confidence 44555555444457999999999999999998 6666663233334446788876 45444
|
The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others. |
| >PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.024 Score=68.44 Aligned_cols=42 Identities=2% Similarity=-0.054 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEE--cCChhhHHHHHHcCCeE
Q 001380 221 LKPAPDIFLSASKILNVPTSECIVI--EDALAGVQAAKAAQMRC 262 (1089)
Q Consensus 221 ~KP~~~~~~~~l~~lgv~p~~~v~V--GD~~~Di~aA~~aG~~~ 262 (1089)
+-.|...++.+++.+|+..++++.| ||+.||+.|-+.+|...
T Consensus 611 gvdKG~AL~~L~e~~gI~~~eViafalGDs~NDisMLe~Ag~gV 654 (694)
T PRK14502 611 GNDKGKAIKILNELFRLNFGNIHTFGLGDSENDYSMLETVDSPI 654 (694)
T ss_pred CCCHHHHHHHHHHHhCCCccceEEEEcCCcHhhHHHHHhCCceE
Confidence 3455666888889999988899998 99999999999999643
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.045 Score=61.70 Aligned_cols=199 Identities=13% Similarity=0.146 Sum_probs=126.7
Q ss_pred EEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEE
Q 001380 606 LAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREI 684 (1089)
Q Consensus 606 vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~ 684 (1089)
++++. .|.=|.+-+....|..+|.. |+.+..+-.. .-|.-+-+.|++..+|++.+.+.+|+.+
T Consensus 264 ~~~s~-~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~---------------~~~~cvkf~pd~~n~fl~G~sd~ki~~w 327 (503)
T KOG0282|consen 264 ASFNN-CGTSFLSASFDRFLKLWDTETGQVLSRFHLD---------------KVPTCVKFHPDNQNIFLVGGSDKKIRQW 327 (503)
T ss_pred hhccc-cCCeeeeeecceeeeeeccccceEEEEEecC---------------CCceeeecCCCCCcEEEEecCCCcEEEE
Confidence 45554 55666666666777778876 7776665443 2578888889885599999999999999
Q ss_pred ECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCC
Q 001380 685 DFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNG 764 (1089)
Q Consensus 685 d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g 764 (1089)
|..++.+..-. ...|..-.+|.|-+.| .-||+......++.|+...+....+.-.
T Consensus 328 DiRs~kvvqeY----------------d~hLg~i~~i~F~~~g-~rFissSDdks~riWe~~~~v~ik~i~~-------- 382 (503)
T KOG0282|consen 328 DIRSGKVVQEY----------------DRHLGAILDITFVDEG-RRFISSSDDKSVRIWENRIPVPIKNIAD-------- 382 (503)
T ss_pred eccchHHHHHH----------------HhhhhheeeeEEccCC-ceEeeeccCccEEEEEcCCCccchhhcc--------
Confidence 98776633221 1234566788888877 6666655555555554333322222100
Q ss_pred CCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEE
Q 001380 765 SSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYC 844 (1089)
Q Consensus 765 ~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~ 844 (1089)
.....-| .|++.|.+ ..+++.+..++|..++....... +..-.|.-.... ..+..+.+
T Consensus 383 ----~~~hsmP-~~~~~P~~-~~~~aQs~dN~i~ifs~~~~~r~--------nkkK~feGh~va--------Gys~~v~f 440 (503)
T KOG0282|consen 383 ----PEMHTMP-CLTLHPNG-KWFAAQSMDNYIAIFSTVPPFRL--------NKKKRFEGHSVA--------GYSCQVDF 440 (503)
T ss_pred ----hhhccCc-ceecCCCC-CeehhhccCceEEEEeccccccc--------CHhhhhcceecc--------CceeeEEE
Confidence 1122223 58889988 88899999999999875421110 000011101111 25778899
Q ss_pred ccCCcEEEEeCCCCEEEEEeCCC
Q 001380 845 AKNGQIYVADSYNHKIKKLDPAS 867 (1089)
Q Consensus 845 ~~~G~lyVaD~~n~~I~~~d~~~ 867 (1089)
+|||...++....+++..+|-.+
T Consensus 441 SpDG~~l~SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWDWKT 463 (503)
T ss_pred cCCCCeEEeecCCccEEEeechh
Confidence 99999999988999999998754
|
|
| >cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0072 Score=63.33 Aligned_cols=103 Identities=22% Similarity=0.298 Sum_probs=61.3
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChh-------------cHHHHHHHHHHcCCc--
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEK-------------DLEAIRNAVLRYGIS-- 516 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~-------------~~~~~~~~~~~~~~~-- 516 (1089)
.+++.++.|..+.|++|++..+.+.+ .-.+..+.++.+... .++. ..+.|.++.......
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~---~~~~v~v~~~~~p~~--~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~ 150 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP---NADGVTVRIFPVPIL--GLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPP 150 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh---ccCceEEEEEEcCcC--CCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCC
Confidence 47899999999999999999999877 112223444443321 1111 122233333222221
Q ss_pred c---ceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHH
Q 001380 517 H---PVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDL 564 (1089)
Q Consensus 517 ~---~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~ 564 (1089)
. ..-.+.+.++++.+||.++|+++ + .+|+. ..|....+.+.++
T Consensus 151 ~~~~~~~i~~~~~l~~~~gi~gtPtii-~-~~G~~---~~G~~~~~~l~~~ 196 (197)
T cd03020 151 AASCDNPVAANLALGRQLGVNGTPTIV-L-ADGRV---VPGAPPAAQLEAL 196 (197)
T ss_pred ccccCchHHHHHHHHHHcCCCcccEEE-E-CCCeE---ecCCCCHHHHHhh
Confidence 1 11223456788999999999997 4 45765 4576666666554
|
They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer. |
| >TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0039 Score=62.31 Aligned_cols=80 Identities=18% Similarity=0.165 Sum_probs=63.9
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCc-cEEEEcCCccCCCCCHHHHHHHH-HHcCCCCCcE
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMF-DAIVSADAFENLKPAPDIFLSAS-KILNVPTSEC 242 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~f-d~i~~~~~~~~~KP~~~~~~~~l-~~lgv~p~~~ 242 (1089)
.++||+.++|+.|++. +.++|+|++.++.+..+++.++....+| +.+++.++... + +.+-+ ..++.+.+.+
T Consensus 58 ~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~ldp~~~~F~~ri~~rd~~~~--~----~~KdL~~i~~~d~~~v 130 (156)
T TIGR02250 58 KLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLIDPDGKYFGDRIISRDESGS--P----HTKSLLRLFPADESMV 130 (156)
T ss_pred EECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHhCcCCCeeccEEEEeccCCC--C----ccccHHHHcCCCcccE
Confidence 6799999999999976 9999999999999999999999864588 77888776531 1 11223 3457788999
Q ss_pred EEEcCChhh
Q 001380 243 IVIEDALAG 251 (1089)
Q Consensus 243 v~VGD~~~D 251 (1089)
++|+|+..=
T Consensus 131 vivDd~~~~ 139 (156)
T TIGR02250 131 VIIDDREDV 139 (156)
T ss_pred EEEeCCHHH
Confidence 999999843
|
This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031. |
| >PRK10517 magnesium-transporting ATPase MgtA; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0054 Score=78.67 Aligned_cols=115 Identities=13% Similarity=0.130 Sum_probs=83.4
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCcc----------------CCCCCHHH
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFE----------------NLKPAPDI 227 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~----------------~~KP~~~~ 227 (1089)
.++.|++.+.++.|+++|+++.++|+.+...+..+.+++|+. -+.++++.+.. ...-.|+-
T Consensus 549 Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~---~~~v~~G~el~~l~~~el~~~~~~~~VfAr~sPe~ 625 (902)
T PRK10517 549 DPPKETTAPALKALKASGVTVKILTGDSELVAAKVCHEVGLD---AGEVLIGSDIETLSDDELANLAERTTLFARLTPMH 625 (902)
T ss_pred CcchhhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC---ccCceeHHHHHhCCHHHHHHHHhhCcEEEEcCHHH
Confidence 366899999999999999999999999999999999999995 23445544322 12334444
Q ss_pred HHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecC
Q 001380 228 FLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKE 285 (1089)
Q Consensus 228 ~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~d 285 (1089)
-.++.+.+.-.-+-+.|+||+.||..+.++|. |+|..|. ..+.....+|.|+-+
T Consensus 626 K~~IV~~Lq~~G~vVam~GDGvNDaPALk~AD---VGIAmg~-gtdvAkeaADiVLld 679 (902)
T PRK10517 626 KERIVTLLKREGHVVGFMGDGINDAPALRAAD---IGISVDG-AVDIAREAADIILLE 679 (902)
T ss_pred HHHHHHHHHHCCCEEEEECCCcchHHHHHhCC---EEEEeCC-cCHHHHHhCCEEEec
Confidence 45555555444466999999999999999998 5555553 233444467877743
|
|
| >KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0075 Score=70.24 Aligned_cols=90 Identities=19% Similarity=0.299 Sum_probs=69.2
Q ss_pred CCEEEEEEecCCCcchhhhhhhHHHHHHHcCC-CCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD-MPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 453 gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~-~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+.+++.|+++||++|+..+|.+.++...++. ..+.+..+.. +....++..+
T Consensus 162 ~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~---------------------------~~~~~~~~~~ 214 (383)
T KOG0191|consen 162 DADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDA---------------------------TVHKSLASRL 214 (383)
T ss_pred CcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeecc---------------------------chHHHHhhhh
Confidence 46788999999999999999999999998873 5677777732 2356788999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
+|...|+..++-++......+.+..+.+.+..++....
T Consensus 215 ~v~~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~ 252 (383)
T KOG0191|consen 215 EVRGYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKE 252 (383)
T ss_pred cccCCceEEEecCCCcccccccccccHHHHHHHHHhhc
Confidence 99999999999555552445666667777777765543
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.27 Score=55.78 Aligned_cols=196 Identities=13% Similarity=0.162 Sum_probs=127.2
Q ss_pred cceeEEeeCCCEEEEEECCCCEEEEEECCCCeE-EEEecCCCCCCCCCCCCcccccccCCce-eEEEecCCCEEEEEECC
Q 001380 659 PQGLAYNAKKNLLYVADTENHALREIDFVNDTV-RTLAGNGTKGSDYQGGEKGTSQLLNSPW-DVCYKPINEKVYIAMAG 736 (1089)
Q Consensus 659 P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v-~~~ag~g~~~~~~~~~~~~~~~~l~~P~-~la~~~~g~~lyvad~~ 736 (1089)
-.++.|-.||. |+.|.-..+.|+.||.++..+ +.+-+. ..|. -+-|.|.++.+++....
T Consensus 71 v~s~~fR~DG~-LlaaGD~sG~V~vfD~k~r~iLR~~~ah------------------~apv~~~~f~~~d~t~l~s~sD 131 (487)
T KOG0310|consen 71 VYSVDFRSDGR-LLAAGDESGHVKVFDMKSRVILRQLYAH------------------QAPVHVTKFSPQDNTMLVSGSD 131 (487)
T ss_pred eeEEEeecCCe-EEEccCCcCcEEEeccccHHHHHHHhhc------------------cCceeEEEecccCCeEEEecCC
Confidence 36788888898 666666777899999654222 222110 1343 35577888888887776
Q ss_pred CcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCC
Q 001380 737 QHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPI 816 (1089)
Q Consensus 737 ~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~ 816 (1089)
...+..||..+..+. ..-+| .-..-...++.|..+.|+++-+..+.|+.++........+.
T Consensus 132 d~v~k~~d~s~a~v~-~~l~~-------------htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e----- 192 (487)
T KOG0310|consen 132 DKVVKYWDLSTAYVQ-AELSG-------------HTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE----- 192 (487)
T ss_pred CceEEEEEcCCcEEE-EEecC-------------CcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEE-----
Confidence 677777888777763 22222 12234566777777799999999999999997754322211
Q ss_pred CCCCccccCCCCCccccccccCc-eEEEEccCCcEEEEeCCCCEEEEEeCC-CCeEEEEeccCCCCCCCCcccccccCCC
Q 001380 817 FPDNLFKFGDRDGMGSEVLLQHP-LGVYCAKNGQIYVADSYNHKIKKLDPA-SNRVSTLAGIGKAGFKDGAALAAQLSEP 894 (1089)
Q Consensus 817 ~~~~l~~~g~~dg~~~~~~l~~P-~gva~~~~G~lyVaD~~n~~I~~~d~~-~~~v~t~~g~g~~g~~~g~~~~~~l~~P 894 (1089)
+. -.+| ..|.+-|.|.+.++-. .+.|+++|.. |++..+...+ ....-
T Consensus 193 -------ln----------hg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~-------------H~KtV 241 (487)
T KOG0310|consen 193 -------LN----------HGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFN-------------HNKTV 241 (487)
T ss_pred -------ec----------CCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhc-------------ccceE
Confidence 00 0134 3456668888877764 4679999987 4443333221 23457
Q ss_pred ceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 895 AGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 895 ~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
+++++..+++-+++-.-.+.+.+|+....
T Consensus 242 TcL~l~s~~~rLlS~sLD~~VKVfd~t~~ 270 (487)
T KOG0310|consen 242 TCLRLASDSTRLLSGSLDRHVKVFDTTNY 270 (487)
T ss_pred EEEEeecCCceEeecccccceEEEEccce
Confidence 78899888887778888899999996554
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.74 Score=51.59 Aligned_cols=194 Identities=11% Similarity=0.115 Sum_probs=118.1
Q ss_pred cceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCc
Q 001380 659 PQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQH 738 (1089)
Q Consensus 659 P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~ 738 (1089)
..++.+++.|+++..|+. .+..-.-|..+|..-+....-. .+ -.-...+|+|+| .||.+...++
T Consensus 306 V~~ls~h~tgeYllsAs~-d~~w~Fsd~~~g~~lt~vs~~~--s~------------v~~ts~~fHpDg-Lifgtgt~d~ 369 (506)
T KOG0289|consen 306 VTGLSLHPTGEYLLSASN-DGTWAFSDISSGSQLTVVSDET--SD------------VEYTSAAFHPDG-LIFGTGTPDG 369 (506)
T ss_pred ceeeeeccCCcEEEEecC-CceEEEEEccCCcEEEEEeecc--cc------------ceeEEeeEcCCc-eEEeccCCCc
Confidence 378889999997777763 3334445566666666553211 10 134678899998 9999999999
Q ss_pred EEEEEECCCCe-EEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCC-eEEEecCCCC
Q 001380 739 QIWEHSTVDGV-TRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGG-SRLLAGGDPI 816 (1089)
Q Consensus 739 ~I~~~~~~~g~-~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~-~~~~~g~~~~ 816 (1089)
.|..||+..+. +..|.|.. .--..|+++.+| +..++..+.+.|+.+|+..-. .+++.
T Consensus 370 ~vkiwdlks~~~~a~Fpght---------------~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt~~----- 428 (506)
T KOG0289|consen 370 VVKIWDLKSQTNVAKFPGHT---------------GPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFKTIQ----- 428 (506)
T ss_pred eEEEEEcCCccccccCCCCC---------------CceeEEEeccCc-eEEEEEecCCeEEEEEehhhcccceee-----
Confidence 99999987553 33444321 123578998887 777777788889999987321 11111
Q ss_pred CCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCce
Q 001380 817 FPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAG 896 (1089)
Q Consensus 817 ~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~g 896 (1089)
..+ ...-..+.+|..|...+.-...=+|+.++..++.-+.+..... ...--+|
T Consensus 429 ---------l~~-------~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~-----------~sg~st~ 481 (506)
T KOG0289|consen 429 ---------LDE-------KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELAD-----------HSGLSTG 481 (506)
T ss_pred ---------ccc-------cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhh-----------cccccce
Confidence 000 1134568889889766655555567777765555444432110 0112345
Q ss_pred EEEccCCcEEEEECCCCEEEE
Q 001380 897 IIEAQNGNLFIADTNNNIIRY 917 (1089)
Q Consensus 897 i~vd~~G~lyVad~~n~~I~~ 917 (1089)
+.+.. ...|++++.+.++.+
T Consensus 482 v~Fg~-~aq~l~s~smd~~l~ 501 (506)
T KOG0289|consen 482 VRFGE-HAQYLASTSMDAILR 501 (506)
T ss_pred eeecc-cceEEeeccchhheE
Confidence 55653 357888887777643
|
|
| >TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0082 Score=78.22 Aligned_cols=124 Identities=11% Similarity=0.204 Sum_probs=86.9
Q ss_pred CCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCC---------ccEEEEcCCcc--------------
Q 001380 163 SGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSM---------FDAIVSADAFE-------------- 219 (1089)
Q Consensus 163 ~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~---------fd~i~~~~~~~-------------- 219 (1089)
..++.|++.+.++.|+++|+++.++|+.+...+..+.+++|+.... -+.++++.+..
T Consensus 644 ~Dp~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA~~~Gi~~~~~~~~~~~~~~~~vitG~~l~~l~~~~l~~~~~~~ 723 (1053)
T TIGR01523 644 YDPPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEVGIIPPNFIHDRDEIMDSMVMTGSQFDALSDEEVDDLKALC 723 (1053)
T ss_pred ecCCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCCccccccccccccceeeehHHhhhcCHHHHHHHhhcC
Confidence 3478999999999999999999999999999999999999994111 12344443322
Q ss_pred --CCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecC--cccC
Q 001380 220 --NLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKE--IGSV 289 (1089)
Q Consensus 220 --~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~d--l~el 289 (1089)
...-.|+--.++.+.+.-.-+.+.|+||+.||..|-+.|. ++|..|.+..+.....+|+++.+ |..+
T Consensus 724 ~V~ar~sP~~K~~iV~~lq~~g~~Vam~GDGvNDapaLk~Ad---VGIAmg~~gt~vak~aADivl~dd~f~~I 794 (1053)
T TIGR01523 724 LVIARCAPQTKVKMIEALHRRKAFCAMTGDGVNDSPSLKMAN---VGIAMGINGSDVAKDASDIVLSDDNFASI 794 (1053)
T ss_pred eEEEecCHHHHHHHHHHHHhcCCeeEEeCCCcchHHHHHhCC---ccEecCCCccHHHHHhcCEEEecCCHHHH
Confidence 1233444444555555444567999999999999999998 55655532223334468888755 5555
|
The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump. |
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.59 E-value=1.5 Score=49.37 Aligned_cols=155 Identities=15% Similarity=0.172 Sum_probs=96.9
Q ss_pred eeEEEecCCCEEEEEECCCcEEEEE-ECCCCeEEEEeCC-CccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCe
Q 001380 719 WDVCYKPINEKVYIAMAGQHQIWEH-STVDGVTRAFSGD-GYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSS 796 (1089)
Q Consensus 719 ~~la~~~~g~~lyvad~~~~~I~~~-~~~~g~~~~~~g~-g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~ 796 (1089)
.++.++|.|+++..++. ..-|.| |..+|........ +. -..-+.++++||| .||.+-..++.
T Consensus 307 ~~ls~h~tgeYllsAs~--d~~w~Fsd~~~g~~lt~vs~~~s-------------~v~~ts~~fHpDg-Lifgtgt~d~~ 370 (506)
T KOG0289|consen 307 TGLSLHPTGEYLLSASN--DGTWAFSDISSGSQLTVVSDETS-------------DVEYTSAAFHPDG-LIFGTGTPDGV 370 (506)
T ss_pred eeeeeccCCcEEEEecC--CceEEEEEccCCcEEEEEeeccc-------------cceeEEeeEcCCc-eEEeccCCCce
Confidence 67889999876666543 444444 4455543333211 10 0124578999999 99999999999
Q ss_pred EEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCC-CeEEEEec
Q 001380 797 IRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPAS-NRVSTLAG 875 (1089)
Q Consensus 797 I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~-~~v~t~~g 875 (1089)
|+.++++.+. +.-.|+...| --..|.++.+|...++....+.|+-+|... ....++.-
T Consensus 371 vkiwdlks~~-------------~~a~Fpght~--------~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l 429 (506)
T KOG0289|consen 371 VKIWDLKSQT-------------NVAKFPGHTG--------PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL 429 (506)
T ss_pred EEEEEcCCcc-------------ccccCCCCCC--------ceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeec
Confidence 9999988543 2223433322 235789998998888877778899888732 22233321
Q ss_pred cCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 876 IGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 876 ~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
. ...+-..+++|..|...+.....=+|..+...+.
T Consensus 430 ~-------------~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k 464 (506)
T KOG0289|consen 430 D-------------EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTK 464 (506)
T ss_pred c-------------ccccceeEEEcCCCCeEEeecceeEEEEEecccc
Confidence 1 2235678899998976665544455666654444
|
|
| >TIGR02200 GlrX_actino Glutaredoxin-like protein | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0023 Score=55.51 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=19.0
Q ss_pred EEEEecCCCcchhhhhhhHHHH
Q 001380 457 VLDFWTYCCINCMHVLPDLEFL 478 (1089)
Q Consensus 457 ll~Fwa~wC~~C~~~~p~l~~l 478 (1089)
+..||++||++|+...+.|.++
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~ 23 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL 23 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc
Confidence 4678999999999999988665
|
This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif. |
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.96 Score=49.46 Aligned_cols=178 Identities=16% Similarity=0.188 Sum_probs=95.9
Q ss_pred ccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCC----CCCccccCCceEEEcCCCCEEEE
Q 001380 714 LLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSS----SLNTSFAQPSGISLSPDFMEIYV 789 (1089)
Q Consensus 714 ~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~----~~~~~~~~P~glav~~~g~~lyv 789 (1089)
.+..|.|+++++ +.||++.. .|||.+-............+ .++.-+ ...++--.-+.|++ .++ .+|+
T Consensus 47 ~F~r~MGl~~~~--~~l~~~t~--~qiw~f~~~~n~l~~~~~~~---~~D~~yvPr~~~~TGdidiHdia~-~~~-~l~f 117 (335)
T TIGR03032 47 TFPRPMGLAVSP--QSLTLGTR--YQLWRFANVDNLLPAGQTHP---GYDRLYVPRASYVTGDIDAHDLAL-GAG-RLLF 117 (335)
T ss_pred ccCccceeeeeC--CeEEEEEc--ceeEEcccccccccccccCC---CCCeEEeeeeeeeccCcchhheee-cCC-cEEE
Confidence 366899999975 57998876 78999932222221111000 011111 11122334678899 444 7888
Q ss_pred EeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEEEeCCCC----EEEEEe
Q 001380 790 ADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADSYNH----KIKKLD 864 (1089)
Q Consensus 790 ad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~~n~----~I~~~d 864 (1089)
.++-=+.+..+++.-..+-.- .|..+.+.-..| =.|-.|+|+. +|+ -||+--... --+.-.
T Consensus 118 VNT~fSCLatl~~~~SF~P~W------kPpFIs~la~eD-------RCHLNGlA~~-~g~p~yVTa~~~sD~~~gWR~~~ 183 (335)
T TIGR03032 118 VNTLFSCLATVSPDYSFVPLW------KPPFISKLAPED-------RCHLNGMALD-DGEPRYVTALSQSDVADGWREGR 183 (335)
T ss_pred EECcceeEEEECCCCcccccc------CCccccccCccC-------ceeecceeee-CCeEEEEEEeeccCCcccccccc
Confidence 887778888887663332111 011111111111 1467788886 554 777642211 000011
Q ss_pred CCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 865 PASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 865 ~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
.++|.+--+... ......|..|.+-... +|+||++|+..++|..++++++
T Consensus 184 ~~gG~vidv~s~--------evl~~GLsmPhSPRWh-dgrLwvldsgtGev~~vD~~~G 233 (335)
T TIGR03032 184 RDGGCVIDIPSG--------EVVASGLSMPHSPRWY-QGKLWLLNSGRGELGYVDPQAG 233 (335)
T ss_pred cCCeEEEEeCCC--------CEEEcCccCCcCCcEe-CCeEEEEECCCCEEEEEcCCCC
Confidence 122222222110 0011247788888876 6899999999999999999843
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=96.57 E-value=1.6 Score=49.85 Aligned_cols=150 Identities=15% Similarity=0.153 Sum_probs=89.1
Q ss_pred CCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCE
Q 001380 601 KFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHA 680 (1089)
Q Consensus 601 ~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~ 680 (1089)
++...+++.+ +|.+.-.|+ ++.|.+++..+..+..-.....+ .-.+|+...+|. | ++.....+
T Consensus 247 k~Vl~v~F~e-ngdviTgDS-~G~i~Iw~~~~~~~~k~~~aH~g-------------gv~~L~~lr~Gt-l-lSGgKDRk 309 (626)
T KOG2106|consen 247 KFVLCVTFLE-NGDVITGDS-GGNILIWSKGTNRISKQVHAHDG-------------GVFSLCMLRDGT-L-LSGGKDRK 309 (626)
T ss_pred eEEEEEEEcC-CCCEEeecC-CceEEEEeCCCceEEeEeeecCC-------------ceEEEEEecCcc-E-eecCccce
Confidence 5666788886 888888887 47899999887655422112122 235677777776 3 33555667
Q ss_pred EEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccc
Q 001380 681 LREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYER 760 (1089)
Q Consensus 681 I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~ 760 (1089)
|..+|- ..+++...-.. .....++-|+ +.++.|||....|. |..=+.+++......|.+.
T Consensus 310 i~~Wd~---~y~k~r~~elP------------e~~G~iRtv~--e~~~di~vGTtrN~-iL~Gt~~~~f~~~v~gh~d-- 369 (626)
T KOG2106|consen 310 IILWDD---NYRKLRETELP------------EQFGPIRTVA--EGKGDILVGTTRNF-ILQGTLENGFTLTVQGHGD-- 369 (626)
T ss_pred EEeccc---cccccccccCc------------hhcCCeeEEe--cCCCcEEEeeccce-EEEeeecCCceEEEEeccc--
Confidence 776662 22222211100 0011233333 23335888776554 4444455665555555542
Q ss_pred cCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEE
Q 001380 761 NLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALN 801 (1089)
Q Consensus 761 ~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~ 801 (1089)
+-.|+|.+|+. .+|++......++.++
T Consensus 370 -------------elwgla~hps~-~q~~T~gqdk~v~lW~ 396 (626)
T KOG2106|consen 370 -------------ELWGLATHPSK-NQLLTCGQDKHVRLWN 396 (626)
T ss_pred -------------ceeeEEcCCCh-hheeeccCcceEEEcc
Confidence 45799999986 8999988888888887
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.094 Score=56.96 Aligned_cols=123 Identities=15% Similarity=0.285 Sum_probs=88.8
Q ss_pred cCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEE-ecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEE
Q 001380 656 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTL-AGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAM 734 (1089)
Q Consensus 656 f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~-ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad 734 (1089)
+.+...++++|- |..|.+......|..+|+.+|.+..- .|. +..-.+|+|++.-.+||-+.
T Consensus 151 lgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~LkltltGh-----------------i~~vr~vavS~rHpYlFs~g 212 (460)
T KOG0285|consen 151 LGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQLKLTLTGH-----------------IETVRGVAVSKRHPYLFSAG 212 (460)
T ss_pred cceEEEEeeCCC-ceeEEecCCCceeEEEEcccCeEEEeecch-----------------hheeeeeeecccCceEEEec
Confidence 457789999986 54777777788999999999887654 322 34678999998776666553
Q ss_pred CCCcEEEEEECCCCeE-EEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCC-eEEEec
Q 001380 735 AGQHQIWEHSTVDGVT-RAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGG-SRLLAG 812 (1089)
Q Consensus 735 ~~~~~I~~~~~~~g~~-~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~-~~~~~g 812 (1089)
...+|..||++..++ +.+-| .+..-..|++.|.- .+.++....+.+|++|..+.. +.++.|
T Consensus 213 -edk~VKCwDLe~nkvIR~YhG---------------HlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l~G 275 (460)
T KOG0285|consen 213 -EDKQVKCWDLEYNKVIRHYHG---------------HLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVLSG 275 (460)
T ss_pred -CCCeeEEEechhhhhHHHhcc---------------ccceeEEEeccccc-eeEEecCCcceEEEeeecccceEEEecC
Confidence 468999999986643 33432 23345678888876 777888888899999988654 445555
Q ss_pred C
Q 001380 813 G 813 (1089)
Q Consensus 813 ~ 813 (1089)
.
T Consensus 276 H 276 (460)
T KOG0285|consen 276 H 276 (460)
T ss_pred C
Confidence 4
|
|
| >PLN02382 probable sucrose-phosphatase | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.012 Score=68.82 Aligned_cols=56 Identities=13% Similarity=0.055 Sum_probs=44.7
Q ss_pred cCCCCCHHHHHHHHHHc---CCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhh
Q 001380 219 ENLKPAPDIFLSASKIL---NVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKE 276 (1089)
Q Consensus 219 ~~~KP~~~~~~~~l~~l---gv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~ 276 (1089)
..+--|...++.+++++ |+++++++++||+.||++|-+.+|...+.+ +...+++++
T Consensus 171 p~g~sKg~Al~~L~~~~~~~gi~~~~~iafGDs~NDleMl~~ag~~gvam--~NA~~elk~ 229 (413)
T PLN02382 171 PQGAGKGQALAYLLKKLKAEGKAPVNTLVCGDSGNDAELFSVPDVYGVMV--SNAQEELLQ 229 (413)
T ss_pred eCCCCHHHHHHHHHHHhhhcCCChhcEEEEeCCHHHHHHHhcCCCCEEEE--cCCcHHHHH
Confidence 34556778999999999 999999999999999999999999655555 334555554
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.54 E-value=1.3 Score=46.80 Aligned_cols=197 Identities=15% Similarity=0.156 Sum_probs=118.8
Q ss_pred CcceeEEeeC-CCEEEEEECCCCEEEEEECCC-C--eEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEE
Q 001380 658 RPQGLAYNAK-KNLLYVADTENHALREIDFVN-D--TVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIA 733 (1089)
Q Consensus 658 ~P~gla~d~~-g~~lyVaD~~n~~I~~~d~~~-g--~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyva 733 (1089)
+-..+|++|. |. ++-+-....+||.++..+ . ..+++...+ .-.+-+.+|++|.|..| .+
T Consensus 16 r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~ck~vld~~---------------hkrsVRsvAwsp~g~~L-a~ 78 (312)
T KOG0645|consen 16 RVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTCKTVLDDG---------------HKRSVRSVAWSPHGRYL-AS 78 (312)
T ss_pred cEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEEEEecccc---------------chheeeeeeecCCCcEE-EE
Confidence 5578999987 66 666666788999999763 2 222222111 11367889999999533 33
Q ss_pred ECCCcEEEEEECCCC---eEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCC-eEE
Q 001380 734 MAGQHQIWEHSTVDG---VTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGG-SRL 809 (1089)
Q Consensus 734 d~~~~~I~~~~~~~g---~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~-~~~ 809 (1089)
-.....+..+-..++ .+..+.|..+ .--+++++.+| ++..+.+...+|.....+.+. ...
T Consensus 79 aSFD~t~~Iw~k~~~efecv~~lEGHEn---------------EVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec 142 (312)
T KOG0645|consen 79 ASFDATVVIWKKEDGEFECVATLEGHEN---------------EVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFEC 142 (312)
T ss_pred eeccceEEEeecCCCceeEEeeeecccc---------------ceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEE
Confidence 333334434433333 2344444433 23489999998 555666666777776655322 222
Q ss_pred EecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCC-CC---eEEEEeccCCCCCCCCc
Q 001380 810 LAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPA-SN---RVSTLAGIGKAGFKDGA 885 (1089)
Q Consensus 810 ~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~-~~---~v~t~~g~g~~g~~~g~ 885 (1089)
.+- -+...|--..|.+-|.-.|+++-+|.+.|+.++-. ++ .+.++.|.
T Consensus 143 ~aV-------------------L~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~--------- 194 (312)
T KOG0645|consen 143 IAV-------------------LQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGH--------- 194 (312)
T ss_pred Eee-------------------eccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCc---------
Confidence 111 01113456678888887899999999999988654 33 24455432
Q ss_pred ccccccCCCceEEEccCCcEEEEECCCCEEEEEeC
Q 001380 886 ALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDL 920 (1089)
Q Consensus 886 ~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~ 920 (1089)
-+--.++++++.|.-.++-+....+++..+
T Consensus 195 -----~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 195 -----ENTVWSLAFDNIGSRLVSCSDDGTVSIWRL 224 (312)
T ss_pred -----cceEEEEEecCCCceEEEecCCcceEeeee
Confidence 123567888888876677666676666653
|
|
| >TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0091 Score=76.63 Aligned_cols=115 Identities=13% Similarity=0.152 Sum_probs=81.0
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCcc----------------CCCCCHHH
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFE----------------NLKPAPDI 227 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~----------------~~KP~~~~ 227 (1089)
.++.|++.+.+++|++.|+++.++|+.+...+..+.+++|+. . +.++++.+.. ...-.|+-
T Consensus 514 Dp~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA~~lGI~-~--~~v~~g~~l~~~~~~el~~~~~~~~vfAr~~Pe~ 590 (867)
T TIGR01524 514 DPPKESTKEAIAALFKNGINVKVLTGDNEIVTARICQEVGID-A--NDFLLGADIEELSDEELARELRKYHIFARLTPMQ 590 (867)
T ss_pred CCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC-C--CCeeecHhhhhCCHHHHHHHhhhCeEEEECCHHH
Confidence 367899999999999999999999999999999999999995 2 2333332221 11233444
Q ss_pred HHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecC
Q 001380 228 FLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKE 285 (1089)
Q Consensus 228 ~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~d 285 (1089)
-.++.+.+.-.-+.+.|+||+.||..+.+.|. ++|..|. ..+.....+|.|+-+
T Consensus 591 K~~iV~~lq~~G~vVam~GDGvNDapALk~Ad---VGIAmg~-gtdvAk~aADiVLld 644 (867)
T TIGR01524 591 KSRIIGLLKKAGHTVGFLGDGINDAPALRKAD---VGISVDT-AADIAKEASDIILLE 644 (867)
T ss_pred HHHHHHHHHhCCCEEEEECCCcccHHHHHhCC---EEEEeCC-ccHHHHHhCCEEEec
Confidence 44445544444467999999999999999999 5555552 233434457777643
|
The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis. |
| >PRK15122 magnesium-transporting ATPase; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.008 Score=77.26 Aligned_cols=119 Identities=16% Similarity=0.146 Sum_probs=85.2
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCcc----------------CCCCCHHH
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFE----------------NLKPAPDI 227 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~----------------~~KP~~~~ 227 (1089)
.++.|++.+.+++|+++|+++.++|+.+...+..+.+++|+. . +.++++.+.. ...-.|+-
T Consensus 549 Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA~~lGI~-~--~~vi~G~el~~~~~~el~~~v~~~~VfAr~sPe~ 625 (903)
T PRK15122 549 DPPKESAAPAIAALRENGVAVKVLTGDNPIVTAKICREVGLE-P--GEPLLGTEIEAMDDAALAREVEERTVFAKLTPLQ 625 (903)
T ss_pred CccHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCC-C--CCccchHhhhhCCHHHHHHHhhhCCEEEEeCHHH
Confidence 367899999999999999999999999999999999999995 2 2344443322 12334455
Q ss_pred HHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEe--cCcccC
Q 001380 228 FLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIR--KEIGSV 289 (1089)
Q Consensus 228 ~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi--~dl~el 289 (1089)
-.++.+.+.-.-+-+.|+||+.||..|.+.|. |+|..|. ..+.....+|.|+ ++|..+
T Consensus 626 K~~iV~~Lq~~G~vVamtGDGvNDaPALk~AD---VGIAmg~-gtdvAkeaADiVLldd~f~~I 685 (903)
T PRK15122 626 KSRVLKALQANGHTVGFLGDGINDAPALRDAD---VGISVDS-GADIAKESADIILLEKSLMVL 685 (903)
T ss_pred HHHHHHHHHhCCCEEEEECCCchhHHHHHhCC---EEEEeCc-ccHHHHHhcCEEEecCChHHH
Confidence 55555555544567999999999999999998 5555552 2334444678776 445444
|
|
| >TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0068 Score=76.64 Aligned_cols=113 Identities=14% Similarity=0.141 Sum_probs=79.1
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCc----------------------cCC
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAF----------------------ENL 221 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~----------------------~~~ 221 (1089)
.++.|++.+.++.|++.|+++.++|+.+...+..+.+++|+. .. ++++++. ...
T Consensus 441 Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~-~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vfA 516 (755)
T TIGR01647 441 DPPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARRLGLG-TN---IYTADVLLKGDNRDDLPSGELGEMVEDADGFA 516 (755)
T ss_pred CCChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCC-CC---CcCHHHhcCCcchhhCCHHHHHHHHHhCCEEE
Confidence 367899999999999999999999999999999999999995 31 1221111 112
Q ss_pred CCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEec
Q 001380 222 KPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRK 284 (1089)
Q Consensus 222 KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~ 284 (1089)
+-.|+--.++.+.+.-.-+.+.|+||+.||..+.+.|. ++|..+. ..+.....+|.|+-
T Consensus 517 r~~Pe~K~~iV~~lq~~G~~VamvGDGvNDapAL~~Ad---VGIAm~~-gtdvAkeaADivLl 575 (755)
T TIGR01647 517 EVFPEHKYEIVEILQKRGHLVGMTGDGVNDAPALKKAD---VGIAVAG-ATDAARSAADIVLT 575 (755)
T ss_pred ecCHHHHHHHHHHHHhcCCEEEEEcCCcccHHHHHhCC---eeEEecC-CcHHHHHhCCEEEE
Confidence 23344444555555545567999999999999999998 4444442 22333345776654
|
This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast. |
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.47 E-value=1.1 Score=47.28 Aligned_cols=242 Identities=11% Similarity=0.156 Sum_probs=146.1
Q ss_pred CCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCC-EEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC
Q 001380 599 PLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGN-FIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE 677 (1089)
Q Consensus 599 ~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~-~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~ 677 (1089)
.+..-..|+... +|+-..+.+-...+.+++.++. ........|.. .....++.++....++.+-.+
T Consensus 19 ~~~~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~------------~svdql~w~~~~~d~~atas~ 85 (313)
T KOG1407|consen 19 HVQKVHSVAWNC-DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHT------------DSVDQLCWDPKHPDLFATASG 85 (313)
T ss_pred hhhcceEEEEcc-cCceeeecccCCceEEEEecchhhhhhhcccCCC------------cchhhheeCCCCCcceEEecC
Confidence 344556788875 6766677777777888777643 33222222111 234667888776668888788
Q ss_pred CCEEEEEECCCCeE-EEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCC
Q 001380 678 NHALREIDFVNDTV-RTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGD 756 (1089)
Q Consensus 678 n~~I~~~d~~~g~v-~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~ 756 (1089)
...|+++|...++- ..+...| .-.-++++|+|+++.+.+. ...|-.+|..+..+..-.
T Consensus 86 dk~ir~wd~r~~k~~~~i~~~~------------------eni~i~wsp~g~~~~~~~k-dD~it~id~r~~~~~~~~-- 144 (313)
T KOG1407|consen 86 DKTIRIWDIRSGKCTARIETKG------------------ENINITWSPDGEYIAVGNK-DDRITFIDARTYKIVNEE-- 144 (313)
T ss_pred CceEEEEEeccCcEEEEeeccC------------------cceEEEEcCCCCEEEEecC-cccEEEEEecccceeehh--
Confidence 88999999766543 3333222 1235778888866655543 445555554433222111
Q ss_pred CccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccc
Q 001380 757 GYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLL 836 (1089)
Q Consensus 757 g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l 836 (1089)
.....-+-++++.++ .||+...+.+.|..++-.. .+.+- ..+|.=
T Consensus 145 -------------~~~~e~ne~~w~~~n-d~Fflt~GlG~v~ILsyps--Lkpv~-------------------si~AH~ 189 (313)
T KOG1407|consen 145 -------------QFKFEVNEISWNNSN-DLFFLTNGLGCVEILSYPS--LKPVQ-------------------SIKAHP 189 (313)
T ss_pred -------------cccceeeeeeecCCC-CEEEEecCCceEEEEeccc--ccccc-------------------ccccCC
Confidence 112234577888555 9999999999998887541 11110 001111
Q ss_pred cCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCc-eEEEccCCcEEEEECCCCEE
Q 001380 837 QHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPA-GIIEAQNGNLFIADTNNNII 915 (1089)
Q Consensus 837 ~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~-gi~vd~~G~lyVad~~n~~I 915 (1089)
.....|.+||+|+-+-+.+...-+...|++--.+.+... .+..|- -|.+.-+|+++.+-+..|-|
T Consensus 190 snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is--------------RldwpVRTlSFS~dg~~lASaSEDh~I 255 (313)
T KOG1407|consen 190 SNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS--------------RLDWPVRTLSFSHDGRMLASASEDHFI 255 (313)
T ss_pred cceEEEEECCCCceEeeccccceeeccChhHhhhheeec--------------cccCceEEEEeccCcceeeccCccceE
Confidence 346789999999877666665666667775443333321 455554 46677788877777778888
Q ss_pred EEEeCCCC
Q 001380 916 RYLDLNKE 923 (1089)
Q Consensus 916 ~~~~~~~~ 923 (1089)
-+...+++
T Consensus 256 DIA~vetG 263 (313)
T KOG1407|consen 256 DIAEVETG 263 (313)
T ss_pred EeEecccC
Confidence 88777776
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.47 E-value=1 Score=55.10 Aligned_cols=193 Identities=13% Similarity=0.211 Sum_probs=116.1
Q ss_pred eEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCc-ceeEEeeCCCEEEEEECCCCEEEEEECCCCeE
Q 001380 614 RLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRP-QGLAYNAKKNLLYVADTENHALREIDFVNDTV 691 (1089)
Q Consensus 614 ~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P-~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v 691 (1089)
..|++-+.+|.|.++... ++.-..+. +|.-| ..++++.+|+ ..++....-.|..++..+...
T Consensus 67 ~~f~~~s~~~tv~~y~fps~~~~~iL~---------------Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~ 130 (933)
T KOG1274|consen 67 NHFLTGSEQNTVLRYKFPSGEEDTILA---------------RFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQ 130 (933)
T ss_pred cceEEeeccceEEEeeCCCCCccceee---------------eeeccceEEEEecCCc-EEEeecCceeEEEEeccccch
Confidence 366666677888887543 22111111 12233 6788888888 555555667888888776544
Q ss_pred EEEe-cCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCc
Q 001380 692 RTLA-GNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNT 770 (1089)
Q Consensus 692 ~~~a-g~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~ 770 (1089)
.... |.-. .-..|.++|.++ +......+++|..|+.+++.+....+.-...+ + .
T Consensus 131 ~~~lrgh~a-----------------pVl~l~~~p~~~-fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n--~-----~ 185 (933)
T KOG1274|consen 131 EKVLRGHDA-----------------PVLQLSYDPKGN-FLAVSSCDGKVQIWDLQDGILSKTLTGVDKDN--E-----F 185 (933)
T ss_pred heeecccCC-----------------ceeeeeEcCCCC-EEEEEecCceEEEEEcccchhhhhcccCCccc--c-----c
Confidence 4433 2111 235789999985 44555578999999999887765443211111 0 0
Q ss_pred cccC-CceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc
Q 001380 771 SFAQ-PSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ 849 (1089)
Q Consensus 771 ~~~~-P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~ 849 (1089)
-... ..-++++|+|+.+.+.-. .+.|..|+..+.... |..-+..-. +.-..++++|+|.
T Consensus 186 ~~s~i~~~~aW~Pk~g~la~~~~-d~~Vkvy~r~~we~~-------------f~Lr~~~~s------s~~~~~~wsPnG~ 245 (933)
T KOG1274|consen 186 ILSRICTRLAWHPKGGTLAVPPV-DNTVKVYSRKGWELQ-------------FKLRDKLSS------SKFSDLQWSPNGK 245 (933)
T ss_pred cccceeeeeeecCCCCeEEeecc-CCeEEEEccCCceeh-------------eeecccccc------cceEEEEEcCCCc
Confidence 0011 245789999766666554 478888888754332 111111110 1134678899998
Q ss_pred EEEEeCCCCEEEEEeCCC
Q 001380 850 IYVADSYNHKIKKLDPAS 867 (1089)
Q Consensus 850 lyVaD~~n~~I~~~d~~~ 867 (1089)
..-|-+.++.|.++|.++
T Consensus 246 YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 246 YIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEeeeccCCcEEEEeccc
Confidence 777778899999998774
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.44 E-value=1.4 Score=46.48 Aligned_cols=198 Identities=15% Similarity=0.194 Sum_probs=119.9
Q ss_pred CcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC
Q 001380 658 RPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ 737 (1089)
Q Consensus 658 ~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~ 737 (1089)
.-+.|++..+|.. ..+......+.+++.+... .....+..|. -.+-..++++|....++.+-.+.
T Consensus 22 ~v~Sv~wn~~g~~-lasgs~dktv~v~n~e~~r--~~~~~~~~gh------------~~svdql~w~~~~~d~~atas~d 86 (313)
T KOG1407|consen 22 KVHSVAWNCDGTK-LASGSFDKTVSVWNLERDR--FRKELVYRGH------------TDSVDQLCWDPKHPDLFATASGD 86 (313)
T ss_pred cceEEEEcccCce-eeecccCCceEEEEecchh--hhhhhcccCC------------CcchhhheeCCCCCcceEEecCC
Confidence 4578888888873 4444455666666665441 1111111111 01455688999888999999999
Q ss_pred cEEEEEECCCCeEEE-EeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCC
Q 001380 738 HQIWEHSTVDGVTRA-FSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPI 816 (1089)
Q Consensus 738 ~~I~~~~~~~g~~~~-~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~ 816 (1089)
..|..||...++... +...+. =.-++++|+|+++.+.+. ...|..++..+..+.. .
T Consensus 87 k~ir~wd~r~~k~~~~i~~~~e----------------ni~i~wsp~g~~~~~~~k-dD~it~id~r~~~~~~--~---- 143 (313)
T KOG1407|consen 87 KTIRIWDIRSGKCTARIETKGE----------------NINITWSPDGEYIAVGNK-DDRITFIDARTYKIVN--E---- 143 (313)
T ss_pred ceEEEEEeccCcEEEEeeccCc----------------ceEEEEcCCCCEEEEecC-cccEEEEEecccceee--h----
Confidence 999999987776543 332221 125788888866666553 4566666655322211 0
Q ss_pred CCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEe-CCCCeEEEEeccCCCCCCCCcccccccCCCc
Q 001380 817 FPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLD-PASNRVSTLAGIGKAGFKDGAALAAQLSEPA 895 (1089)
Q Consensus 817 ~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d-~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~ 895 (1089)
++| ...-.-+++.-++++|+..+++++|..+. |+-+.+.++.. .-.+.-
T Consensus 144 -----~~~-----------~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~A--------------H~snCi 193 (313)
T KOG1407|consen 144 -----EQF-----------KFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKA--------------HPSNCI 193 (313)
T ss_pred -----hcc-----------cceeeeeeecCCCCEEEEecCCceEEEEecccccccccccc--------------CCcceE
Confidence 000 11234567777789999999999988775 33344444432 224456
Q ss_pred eEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 896 GIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 896 gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
.|.+|++|+-+.+....-.+...+++.-
T Consensus 194 cI~f~p~GryfA~GsADAlvSLWD~~EL 221 (313)
T KOG1407|consen 194 CIEFDPDGRYFATGSADALVSLWDVDEL 221 (313)
T ss_pred EEEECCCCceEeeccccceeeccChhHh
Confidence 6778999987777666666666666553
|
|
| >COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.017 Score=55.00 Aligned_cols=123 Identities=21% Similarity=0.202 Sum_probs=84.4
Q ss_pred CCCCCCCCCCccccC----CCCC-ceeecccccCCCEEEEE-EecCCCcchhh-hhhhHHHHHHHcCCCCEE-EEEEeCC
Q 001380 424 RKTTPIVPEFPAKLD----WLNT-APLQFRRDLKGKVVVLD-FWTYCCINCMH-VLPDLEFLEKKYKDMPFT-VVGVHSA 495 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~----~~~g-~~~~l~~~~~gk~vll~-Fwa~wC~~C~~-~~p~l~~l~~~~~~~~v~-vi~v~~~ 495 (1089)
..+|+++|.-++... .-.| ..++...-++||.|+|. .=+...|.|-. .+|.+.+++++++.+|+. |+-||+
T Consensus 3 ~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSV- 81 (165)
T COG0678 3 IMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSV- 81 (165)
T ss_pred cccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEe-
Confidence 357888888766544 1111 12333133588876653 33668888886 899999999999987763 444443
Q ss_pred CCCChhcHHHHHHHHHHcCCc--cceeecCChhHHHHhC-----------CCceeEEEEECCCCcEEEEec
Q 001380 496 KFDNEKDLEAIRNAVLRYGIS--HPVVNDGDMNLWRELG-----------VNSWPTFAVVGPNGKLLAQLA 553 (1089)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~--~~v~~d~~~~l~~~~~-----------v~~~Pt~~lid~~G~i~~~~~ 553 (1089)
.|.-...+|.+..|.. ...+.|.+.+.-+.+| ++++....|+ .||.+...+.
T Consensus 82 -----ND~FVm~AWak~~g~~~~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~~~i 146 (165)
T COG0678 82 -----NDAFVMNAWAKSQGGEGNIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEKLFI 146 (165)
T ss_pred -----CcHHHHHHHHHhcCCCccEEEecCCCchhhhhcCceeecccCCcceeeeeEEEEE-eCCeEEEEEe
Confidence 4566667777777766 4678899988888754 5788899999 8999877654
|
|
| >PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria [] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.009 Score=64.89 Aligned_cols=71 Identities=14% Similarity=0.171 Sum_probs=48.7
Q ss_pred hHHHHHHHCCCCCCCccEEEEcC----CccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCC
Q 001380 194 KVDANLAAAGLPVSMFDAIVSAD----AFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTT 268 (1089)
Q Consensus 194 ~~~~~l~~~gl~~~~fd~i~~~~----~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g 268 (1089)
.++..++..|+. ...+++.. -+...--|...++.+++++++++++++++||+.||+.|. ..+.+.|.|...
T Consensus 135 ~i~~~l~~~~l~---~~~i~s~~~~ldilP~~a~K~~Al~~L~~~~~~~~~~vl~aGDSgND~~mL-~~~~~~vvV~Na 209 (247)
T PF05116_consen 135 EIRARLRQRGLR---VNVIYSNGRDLDILPKGASKGAALRYLMERWGIPPEQVLVAGDSGNDLEML-EGGDHGVVVGNA 209 (247)
T ss_dssp HHHHHHHCCTCE---EEEEECTCCEEEEEETT-SHHHHHHHHHHHHT--GGGEEEEESSGGGHHHH-CCSSEEEE-TTS
T ss_pred HHHHHHHHcCCC---eeEEEccceeEEEccCCCCHHHHHHHHHHHhCCCHHHEEEEeCCCCcHHHH-cCcCCEEEEcCC
Confidence 355556666665 33444332 123355577899999999999999999999999999988 777788888653
|
SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B .... |
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.61 Score=56.93 Aligned_cols=239 Identities=14% Similarity=0.106 Sum_probs=126.9
Q ss_pred ceEEEeecCCeEEEEeCCCCEEEEEeCCCC--EEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEE
Q 001380 604 GKLAIDILNNRLFISDSNHNRIVVTDLDGN--FIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHAL 681 (1089)
Q Consensus 604 ~~vavd~~~g~L~vsd~~~~~I~~~~~~g~--~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I 681 (1089)
..|++|+.+..|+++++ ++-|.+++..-- .-.+|...+. .-.+++. .++ .+++.+.++.|
T Consensus 17 t~i~~d~~gefi~tcgs-dg~ir~~~~~sd~e~P~ti~~~g~--------------~v~~ia~--~s~-~f~~~s~~~tv 78 (933)
T KOG1274|consen 17 TLICYDPDGEFICTCGS-DGDIRKWKTNSDEEEPETIDISGE--------------LVSSIAC--YSN-HFLTGSEQNTV 78 (933)
T ss_pred EEEEEcCCCCEEEEecC-CCceEEeecCCcccCCchhhccCc--------------eeEEEee--ccc-ceEEeeccceE
Confidence 35788886666666665 355666543211 1111110100 1244444 344 57777788888
Q ss_pred EEEECCCCeEEEEecCCCCCCCCCCCCcccccccC-CceeEEEecCCCEEEEEECCCcEEEEEECCCC-eEEEEeCCCcc
Q 001380 682 REIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLN-SPWDVCYKPINEKVYIAMAGQHQIWEHSTVDG-VTRAFSGDGYE 759 (1089)
Q Consensus 682 ~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~-~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g-~~~~~~g~g~~ 759 (1089)
.++...++.-.++.. .+. -..+++|+-+|+ ..++....-.|...+..+. ....+.|..
T Consensus 79 ~~y~fps~~~~~iL~-----------------Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~~~~lrgh~-- 138 (933)
T KOG1274|consen 79 LRYKFPSGEEDTILA-----------------RFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQEKVLRGHD-- 138 (933)
T ss_pred EEeeCCCCCccceee-----------------eeeccceEEEEecCCc-EEEeecCceeEEEEeccccchheeecccC--
Confidence 888876554443321 111 236889988774 3344333445656665543 333343321
Q ss_pred ccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCc
Q 001380 760 RNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHP 839 (1089)
Q Consensus 760 ~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P 839 (1089)
+.-.+|.++|.+ .+.+.-+.+|.|+.++.+++......++ ++..-+.. +..+
T Consensus 139 -------------apVl~l~~~p~~-~fLAvss~dG~v~iw~~~~~~~~~tl~~-------v~k~n~~~-------~s~i 190 (933)
T KOG1274|consen 139 -------------APVLQLSYDPKG-NFLAVSSCDGKVQIWDLQDGILSKTLTG-------VDKDNEFI-------LSRI 190 (933)
T ss_pred -------------CceeeeeEcCCC-CEEEEEecCceEEEEEcccchhhhhccc-------CCcccccc-------ccce
Confidence 234589999998 5666666789999999987765432222 11111100 1122
Q ss_pred -eEEEEccCC-cEEEEeCCCCEEEEEeCCCCeEEEE-eccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEE
Q 001380 840 -LGVYCAKNG-QIYVADSYNHKIKKLDPASNRVSTL-AGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIR 916 (1089)
Q Consensus 840 -~gva~~~~G-~lyVaD~~n~~I~~~d~~~~~v~t~-~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~ 916 (1089)
.-++|.|+| .+.+.- -.+.|+.|++.+....-. -+.-.. +.-..+..+++|.-+.|.+-++.|.
T Consensus 191 ~~~~aW~Pk~g~la~~~-~d~~Vkvy~r~~we~~f~Lr~~~~s------------s~~~~~~wsPnG~YiAAs~~~g~I~ 257 (933)
T KOG1274|consen 191 CTRLAWHPKGGTLAVPP-VDNTVKVYSRKGWELQFKLRDKLSS------------SKFSDLQWSPNGKYIAASTLDGQIL 257 (933)
T ss_pred eeeeeecCCCCeEEeec-cCCeEEEEccCCceeheeecccccc------------cceEEEEEcCCCcEEeeeccCCcEE
Confidence 335788884 555554 457899999877654322 111000 0023444556665444555556666
Q ss_pred EEeCC
Q 001380 917 YLDLN 921 (1089)
Q Consensus 917 ~~~~~ 921 (1089)
+++.+
T Consensus 258 vWnv~ 262 (933)
T KOG1274|consen 258 VWNVD 262 (933)
T ss_pred EEecc
Confidence 66555
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.84 Score=46.59 Aligned_cols=243 Identities=13% Similarity=0.090 Sum_probs=0.0
Q ss_pred ceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcE
Q 001380 660 QGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQ 739 (1089)
Q Consensus 660 ~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~ 739 (1089)
..+++.|.|. ||.........|..-. -..+..-.+.-....+..---.-..-.-.+.+-.+|+|.| .|..+..+...
T Consensus 36 rav~fhp~g~-lyavgsnskt~ric~y-p~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g-eliatgsndk~ 112 (350)
T KOG0641|consen 36 RAVAFHPAGG-LYAVGSNSKTFRICAY-PALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG-ELIATGSNDKT 112 (350)
T ss_pred eeEEecCCCc-eEEeccCCceEEEEcc-ccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc-CeEEecCCCce
Q ss_pred EEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCc----eEEEcCCCC-EEEEEeCCCC-eEEEEEcCCCCeEEEecC
Q 001380 740 IWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPS----GISLSPDFM-EIYVADSESS-SIRALNLKTGGSRLLAGG 813 (1089)
Q Consensus 740 I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~----glav~~~g~-~lyvad~~~~-~I~~~~~~~~~~~~~~g~ 813 (1089)
|..+.....++....-.-...-.+|....-+.+..|. =|+-...|+ +||++|.+.+ -...++-.+|-+..+
T Consensus 113 ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal--- 189 (350)
T KOG0641|consen 113 IKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL--- 189 (350)
T ss_pred EEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE---
Q ss_pred CCCCCCCccccCCCCCccccccccCce--------------------EEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEE
Q 001380 814 DPIFPDNLFKFGDRDGMGSEVLLQHPL--------------------GVYCAKNGQIYVADSYNHKIKKLDPASNRVSTL 873 (1089)
Q Consensus 814 ~~~~~~~l~~~g~~dg~~~~~~l~~P~--------------------gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~ 873 (1089)
..+....|.-|..|.......|..|. .|++||.|+++++......-..+|..++....-
T Consensus 190 -yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~ 268 (350)
T KOG0641|consen 190 -YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQR 268 (350)
T ss_pred -EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeee
Q ss_pred eccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCC
Q 001380 874 AGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNK 922 (1089)
Q Consensus 874 ~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~ 922 (1089)
.-. .-..-..+.+.+.-....+.+....|+.-++.+
T Consensus 269 f~p-------------hsadir~vrfsp~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 269 FHP-------------HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred eCC-------------CccceeEEEeCCCceEEEEecccceEEEeeccc
|
|
| >PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.053 Score=52.82 Aligned_cols=115 Identities=12% Similarity=0.129 Sum_probs=80.2
Q ss_pred cccCCCEEEEEEecCCCcchhhhhhhHHHHHHH-cCCCCEEEEEEeCCCCCChh----cHHHHHHHHHHcC--Cccc-ee
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKK-YKDMPFTVVGVHSAKFDNEK----DLEAIRNAVLRYG--ISHP-VV 520 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~-~~~~~v~vi~v~~~~~~~~~----~~~~~~~~~~~~~--~~~~-v~ 520 (1089)
..+.||+-||...|---..-..-.|.+..+.+. |+.......+|- +.++ +--=++..+++.. .+|. ++
T Consensus 33 ~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d~yqtttIi----N~dDAi~gt~~fVrss~e~~kk~~p~s~~v 108 (160)
T PF09695_consen 33 AQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTII----NLDDAIWGTGGFVRSSAEDSKKEFPWSQFV 108 (160)
T ss_pred cccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCccceeEEEEE----ecccccccchHHHHHHHHHhhhhCCCcEEE
Confidence 678999988888765444333344555556555 665556666663 2222 2233455555544 5664 67
Q ss_pred ecCChhHHHHhCCCc-eeEEEEECCCCcEEEEecCCCchhhHHHHHHH
Q 001380 521 NDGDMNLWRELGVNS-WPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEA 567 (1089)
Q Consensus 521 ~d~~~~l~~~~~v~~-~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~ 567 (1089)
.|.++.+.+.|+... --..+++|++|++++...|..+.++++++|.-
T Consensus 109 lD~~G~~~~aW~L~~~~SaiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~L 156 (160)
T PF09695_consen 109 LDSNGVVRKAWQLQEESSAIIVLDKQGKVQFVKEGALSPAEVQQVIAL 156 (160)
T ss_pred EcCCCceeccccCCCCCceEEEEcCCccEEEEECCCCCHHHHHHHHHH
Confidence 899999999998753 35688999999999999999999999888764
|
|
| >PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.013 Score=74.21 Aligned_cols=69 Identities=13% Similarity=0.004 Sum_probs=49.5
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhcc
Q 001380 221 LKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTGG 298 (1089)
Q Consensus 221 ~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~~ 298 (1089)
+--|...++.+++ +++++.++++||+.||+.|.+.++...+.|..|. ....+++++.+..++ ..+|..+
T Consensus 655 ~vnKG~al~~ll~--~~~~d~vl~~GD~~nDe~Mf~~~~~~~~~v~vG~-----~~s~A~~~l~~~~eV--~~~L~~l 723 (726)
T PRK14501 655 GVNKGRAVRRLLE--AGPYDFVLAIGDDTTDEDMFRALPETAITVKVGP-----GESRARYRLPSQREV--RELLRRL 723 (726)
T ss_pred CCCHHHHHHHHHh--cCCCCEEEEECCCCChHHHHHhcccCceEEEECC-----CCCcceEeCCCHHHH--HHHHHHH
Confidence 3445666777777 6778999999999999999998753334444443 234688999988774 6676654
|
|
| >cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.028 Score=57.66 Aligned_cols=41 Identities=32% Similarity=0.526 Sum_probs=34.2
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEe
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVH 493 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~ 493 (1089)
.+++.|+.|+.+.||+|....+.+.++.+++++ ++.+.-++
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~-~v~~~~~~ 54 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK-DVKFEKVP 54 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC-CceEEEcC
Confidence 689999999999999999999999999999854 35554444
|
It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain. |
| >PRK10954 periplasmic protein disulfide isomerase I; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.031 Score=59.05 Aligned_cols=44 Identities=20% Similarity=0.443 Sum_probs=33.7
Q ss_pred ccCCCEEEEEEecCCCcchhhhhhhH---HHHHHHcCCCCEEEEEEeC
Q 001380 450 DLKGKVVVLDFWTYCCINCMHVLPDL---EFLEKKYKDMPFTVVGVHS 494 (1089)
Q Consensus 450 ~~~gk~vll~Fwa~wC~~C~~~~p~l---~~l~~~~~~~~v~vi~v~~ 494 (1089)
...|++.|+.|+..-||+|.+..+.+ ..+.+.+.+. +.++-+++
T Consensus 34 p~~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~-v~~~~~~~ 80 (207)
T PRK10954 34 PVAGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEG-TKMTKYHV 80 (207)
T ss_pred cCCCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCC-CeEEEecc
Confidence 44678889999999999999988866 7778887653 55555554
|
|
| >COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.018 Score=74.14 Aligned_cols=118 Identities=12% Similarity=0.123 Sum_probs=82.6
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCc-cEEEEcCCccC----------------CCCCHH
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMF-DAIVSADAFEN----------------LKPAPD 226 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~f-d~i~~~~~~~~----------------~KP~~~ 226 (1089)
.++.+++++.++.|+++|+++.++|+.+...+..+.+++|+..+.. +.++.+.+... .+-.|+
T Consensus 546 Dppr~~v~~aI~~l~~AGI~v~MiTGD~~~TA~aIa~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~VfARvsP~ 625 (917)
T COG0474 546 DPPREDVKEAIEELREAGIKVWMITGDHVETAIAIAKECGIEAEAESALVIDGAELDALSDEELAELVEELSVFARVSPE 625 (917)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCcEEEEcCHH
Confidence 4789999999999999999999999999999999999999862222 33555544321 233444
Q ss_pred HHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEec
Q 001380 227 IFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRK 284 (1089)
Q Consensus 227 ~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~ 284 (1089)
--.++.+.+.-.-+-+.|+||+.||.-|-+.|. |+|..|.+-.+.....+|.+.-
T Consensus 626 qK~~IV~~lq~~g~vVamtGDGvNDapALk~AD---VGIamg~~Gtdaak~Aadivl~ 680 (917)
T COG0474 626 QKARIVEALQKSGHVVAMTGDGVNDAPALKAAD---VGIAMGGEGTDAAKEAADIVLL 680 (917)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCchhHHHHHhcC---ccEEecccHHHHHHhhcceEee
Confidence 445555555545566999999999999999999 5554443222222223555543
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=3.4 Score=50.74 Aligned_cols=169 Identities=12% Similarity=0.050 Sum_probs=87.4
Q ss_pred CCcceeEEeeCCCEEEEEEC-------CCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCE
Q 001380 657 NRPQGLAYNAKKNLLYVADT-------ENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEK 729 (1089)
Q Consensus 657 ~~P~gla~d~~g~~lyVaD~-------~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~ 729 (1089)
..+...+++++|+.+.+..+ ....|+.++..+.. +.+. .|. .-..-.|+|+|+.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt-~g~-----------------~~t~PsWspDG~~ 410 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVL-EGH-----------------SLTRPSWSLDADA 410 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeee-cCC-----------------CCCCceECCCCCc
Confidence 36788899999975544431 23467777753333 3332 111 1122358888878
Q ss_pred EEEEECCCcEEEEEEC-CCCeEEEEeCCCccccCCCCCCCCccc-cCCceEEEcCCCCEEEEEeCCCCeEEE---EEcCC
Q 001380 730 VYIAMAGQHQIWEHST-VDGVTRAFSGDGYERNLNGSSSLNTSF-AQPSGISLSPDFMEIYVADSESSSIRA---LNLKT 804 (1089)
Q Consensus 730 lyvad~~~~~I~~~~~-~~g~~~~~~g~g~~~~~~g~~~~~~~~-~~P~glav~~~g~~lyvad~~~~~I~~---~~~~~ 804 (1089)
||+...++.-++..+. .++.+....-.+.+.. . .+ ...+.+.+++||.+|.+.-. ++|+. ....+
T Consensus 411 lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~-------~-~~~g~Issl~wSpDG~RiA~i~~--g~v~Va~Vvr~~~ 480 (591)
T PRK13616 411 VWVVVDGNTVVRVIRDPATGQLARTPVDASAVA-------S-RVPGPISELQLSRDGVRAAMIIG--GKVYLAVVEQTED 480 (591)
T ss_pred eEEEecCcceEEEeccCCCceEEEEeccCchhh-------h-ccCCCcCeEEECCCCCEEEEEEC--CEEEEEEEEeCCC
Confidence 8887654332322221 1233332221111110 0 11 24789999999988866542 46665 45444
Q ss_pred CCeEEEecCCCCCCCCccccCCCCCcccccccc-CceEEEEccCCcEEEEeC-CCCEEEEEeCCCCeEE
Q 001380 805 GGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQ-HPLGVYCAKNGQIYVADS-YNHKIKKLDPASNRVS 871 (1089)
Q Consensus 805 ~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~-~P~gva~~~~G~lyVaD~-~n~~I~~~d~~~~~v~ 871 (1089)
|. ..+..- ...+ ..+. .+..+.+..++.|+|... .+..+..++.++...+
T Consensus 481 G~-~~l~~~--------~~l~--------~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~ 532 (591)
T PRK13616 481 GQ-YALTNP--------REVG--------PGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSD 532 (591)
T ss_pred Cc-eeeccc--------EEee--------cccCCccccceEecCCEEEEEecCCCCceEEEecCCcccc
Confidence 44 222100 0000 0122 246688888888887644 3456788877654433
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.21 E-value=1.2 Score=47.89 Aligned_cols=225 Identities=19% Similarity=0.256 Sum_probs=113.8
Q ss_pred CCeEEEEeCCCCEEEEEeCCC-CEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCe
Q 001380 612 NNRLFISDSNHNRIVVTDLDG-NFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDT 690 (1089)
Q Consensus 612 ~g~L~vsd~~~~~I~~~~~~g-~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~ 690 (1089)
++..|++|-.++ +.++|-.. ..-+.++.....| .-.|+.+ .|+..||+|..+. +..+|..+-.
T Consensus 96 e~yvyvad~ssG-L~IvDIS~P~sP~~~~~lnt~g------------yaygv~v--sGn~aYVadlddg-fLivdvsdps 159 (370)
T COG5276 96 EEYVYVADWSSG-LRIVDISTPDSPTLIGFLNTDG------------YAYGVYV--SGNYAYVADLDDG-FLIVDVSDPS 159 (370)
T ss_pred ccEEEEEcCCCc-eEEEeccCCCCcceeccccCCc------------eEEEEEe--cCCEEEEeeccCc-EEEEECCCCC
Confidence 678999996544 44454321 1112222221111 2356666 5899999998554 5567776655
Q ss_pred EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCc
Q 001380 691 VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNT 770 (1089)
Q Consensus 691 v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~ 770 (1089)
--+++|...... ...|+++++ |++-|++....+ +...|-.+-..-.|.++-+.+
T Consensus 160 sP~lagrya~~~-------------~d~~~v~IS--Gn~AYvA~~d~G-L~ivDVSnp~sPvli~~~n~g---------- 213 (370)
T COG5276 160 SPQLAGRYALPG-------------GDTHDVAIS--GNYAYVAWRDGG-LTIVDVSNPHSPVLIGSYNTG---------- 213 (370)
T ss_pred CceeeeeeccCC-------------CCceeEEEe--cCeEEEEEeCCC-eEEEEccCCCCCeEEEEEecC----------
Confidence 555554432211 123889997 789999987654 333443333222232211000
Q ss_pred cccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEE---EEccC
Q 001380 771 SFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGV---YCAKN 847 (1089)
Q Consensus 771 ~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gv---a~~~~ 847 (1089)
..-+++.+++ ++.|+++...+ +..++.++-..-++ ||..+ -+.|.++ .+ ++
T Consensus 214 --~g~~sv~vsd--nr~y~vvy~eg-vlivd~s~~ssp~~-------------~gsye-------t~~p~~~s~v~V-s~ 267 (370)
T COG5276 214 --PGTYSVSVSD--NRAYLVVYDEG-VLIVDVSGPSSPTV-------------FGSYE-------TSNPVSISTVPV-SG 267 (370)
T ss_pred --CceEEEEecC--CeeEEEEcccc-eEEEecCCCCCceE-------------eeccc-------cCCcccccceec-cc
Confidence 0233455554 38898886644 45555543222122 22221 1245444 44 35
Q ss_pred CcEEEEeCCCCEEEEEeCCCCeEEEEeccC-CCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEE
Q 001380 848 GQIYVADSYNHKIKKLDPASNRVSTLAGIG-KAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRY 917 (1089)
Q Consensus 848 G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g-~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~ 917 (1089)
...||+|.. +-+..+|..+..-.++.+.- .+| ..-.||... ++-+|++|.++..|.-
T Consensus 268 ~~~Yvadga-~gl~~idisnp~spfl~ss~~t~g-----------~~a~gi~ay-~~y~yiadkn~g~vV~ 325 (370)
T COG5276 268 EYAYVADGA-KGLPIIDISNPPSPFLSSSLDTAG-----------YQAAGIRAY-GNYNYIADKNTGAVVD 325 (370)
T ss_pred ceeeeeccc-cCceeEeccCCCCCchhccccCCC-----------ccccceEEe-cCeeEeccCCceEEEe
Confidence 579999954 44444443322222222110 000 123467765 4569999977655543
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=96.20 E-value=3.1 Score=50.22 Aligned_cols=132 Identities=16% Similarity=0.246 Sum_probs=70.9
Q ss_pred CCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC--------CCCEEE
Q 001380 612 NNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT--------ENHALR 682 (1089)
Q Consensus 612 ~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~--------~n~~I~ 682 (1089)
++++|+.+. .+.|+.+|.+ |+.+......... ...+.--.+.++. ++.+|+... ..+.|+
T Consensus 110 ~~~V~v~~~-~g~v~AlD~~TG~~~W~~~~~~~~--------~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~ 178 (488)
T cd00216 110 PRKVFFGTF-DGRLVALDAETGKQVWKFGNNDQV--------PPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALR 178 (488)
T ss_pred CCeEEEecC-CCeEEEEECCCCCEeeeecCCCCc--------CcceEecCCCEEE--CCEEEEeccccccccCCCCcEEE
Confidence 388998875 5789999985 8888776544210 0000000122343 244777542 246789
Q ss_pred EEECCCCeEEEEecCCCCCC-CCC-CCCcccccccC--Cce-eEEEecCCCEEEEEECCC-----------------cEE
Q 001380 683 EIDFVNDTVRTLAGNGTKGS-DYQ-GGEKGTSQLLN--SPW-DVCYKPINEKVYIAMAGQ-----------------HQI 740 (1089)
Q Consensus 683 ~~d~~~g~v~~~ag~g~~~~-~~~-~~~~~~~~~l~--~P~-~la~~~~g~~lyvad~~~-----------------~~I 740 (1089)
.+|.++|++.--...+.... ... .+......... ..| ..++++.++.+||..... +.|
T Consensus 179 alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l 258 (488)
T cd00216 179 AYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSI 258 (488)
T ss_pred EEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeE
Confidence 99998877655443221100 000 00000000000 111 257787777999986432 379
Q ss_pred EEEECCCCeEEEEe
Q 001380 741 WEHSTVDGVTRAFS 754 (1089)
Q Consensus 741 ~~~~~~~g~~~~~~ 754 (1089)
+.+|..+|+...-.
T Consensus 259 ~Ald~~tG~~~W~~ 272 (488)
T cd00216 259 VALDADTGKVKWFY 272 (488)
T ss_pred EEEcCCCCCEEEEe
Confidence 99999999876543
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.22 Score=52.98 Aligned_cols=152 Identities=13% Similarity=0.183 Sum_probs=106.6
Q ss_pred CCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCE
Q 001380 602 FPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHA 680 (1089)
Q Consensus 602 ~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~ 680 (1089)
--.++.+.|.+++.||+-.-...-..+|.. |.-+.++.+. +. .-..|.+.|+|. -|++...+..
T Consensus 188 DV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~gh-es-------------DINsv~ffP~G~-afatGSDD~t 252 (343)
T KOG0286|consen 188 DVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGH-ES-------------DINSVRFFPSGD-AFATGSDDAT 252 (343)
T ss_pred cEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccc-cc-------------ccceEEEccCCC-eeeecCCCce
Confidence 344567777789999998877788888875 7666676654 22 457899999998 7899888999
Q ss_pred EEEEECCC-CeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCC-eEEEEeCCCc
Q 001380 681 LREIDFVN-DTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDG-VTRAFSGDGY 758 (1089)
Q Consensus 681 I~~~d~~~-g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g-~~~~~~g~g~ 758 (1089)
.|.||+.. ..+..+.... ....-..|+|+.+| +|.++......+..||..-+ .+..+.|..
T Consensus 253 cRlyDlRaD~~~a~ys~~~---------------~~~gitSv~FS~SG-RlLfagy~d~~c~vWDtlk~e~vg~L~GHe- 315 (343)
T KOG0286|consen 253 CRLYDLRADQELAVYSHDS---------------IICGITSVAFSKSG-RLLFAGYDDFTCNVWDTLKGERVGVLAGHE- 315 (343)
T ss_pred eEEEeecCCcEEeeeccCc---------------ccCCceeEEEcccc-cEEEeeecCCceeEeeccccceEEEeeccC-
Confidence 99999976 4455554211 12234789999988 66666666677777886544 445555443
Q ss_pred cccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEE
Q 001380 759 ERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRAL 800 (1089)
Q Consensus 759 ~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~ 800 (1089)
+.-+.|.++||| ....+-+..+.++.+
T Consensus 316 --------------NRvScl~~s~DG-~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 316 --------------NRVSCLGVSPDG-MAVATGSWDSTLRIW 342 (343)
T ss_pred --------------CeeEEEEECCCC-cEEEecchhHheeec
Confidence 246789999998 666666666666543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1089 | ||||
| 2hyx_A | 352 | Structure Of The C-Terminal Domain Of Dipz From Myc | 1e-15 | ||
| 3e58_A | 214 | Crystal Structure Of Putative Beta-Phosphoglucomuta | 8e-12 | ||
| 1te2_A | 226 | Putative Phosphatase Ynic From Escherichia Coli K12 | 2e-09 | ||
| 4g9b_A | 243 | Crystal Structure Of Beta-Phosphoglucomutase Homolo | 8e-09 | ||
| 2l5o_A | 153 | Solution Structure Of A Putative Thioredoxin From N | 1e-08 | ||
| 3qyp_A | 243 | Crystal Structure Of Pyrophosphatase From Bacteroid | 4e-08 | ||
| 3qub_A | 243 | Crystal Structure Of Pyrophosphatase From Bacteroid | 4e-08 | ||
| 3quq_A | 243 | Crystal Structure Of Pyrophosphatase From Bacteroid | 5e-08 | ||
| 3s6j_A | 233 | The Crystal Structure Of A Hydrolase From Pseudomon | 5e-08 | ||
| 3r9k_A | 243 | Crystal Structure Of Pyrophosphatase From Bacteroid | 5e-08 | ||
| 1o03_A | 221 | Structure Of Pentavalent Phosphorous Intermediate O | 1e-07 | ||
| 3qu5_A | 243 | Crystal Structure Of Pyrophosphatase From Bacteroid | 2e-07 | ||
| 3qut_A | 243 | Crystal Structure Of Pyrophosphatase From Bacteroid | 2e-07 | ||
| 4ex6_A | 237 | Crystal Structure Of The Alnumycin P Phosphatase Al | 2e-07 | ||
| 3fm9_A | 221 | Analysis Of The Structural Determinants Underlying | 2e-07 | ||
| 4eek_A | 259 | Crystal Structure Of Had Family Hydrolase Dr_1622 F | 4e-07 | ||
| 3qu4_A | 243 | Crystal Structure Of Pyrophosphatase From Bacteroid | 4e-07 | ||
| 4gib_A | 250 | 2.27 Angstrom Crystal Structure Of Beta-Phosphogluc | 7e-07 | ||
| 1lvh_A | 221 | The Structure Of Phosphorylated Beta-phosphoglucomu | 9e-07 | ||
| 3c71_A | 143 | Struture Of A Resa Variant With A Dsba-Like Active | 1e-06 | ||
| 3c73_A | 140 | Structure Of Cehc Variant Resa Length = 140 | 1e-06 | ||
| 2h1b_A | 143 | Resa E80q Length = 143 | 2e-06 | ||
| 3nas_A | 233 | The Crystal Structure Of Beta-Phosphoglucomutase Fr | 2e-06 | ||
| 1st9_A | 143 | Crystal Structure Of A Soluble Domain Of Resa In Th | 2e-06 | ||
| 2b5x_A | 148 | Solution Structure Of A Thioredoxin-Like Protein In | 6e-06 | ||
| 3or5_A | 165 | Crystal Structure Of Thiol:disulfide Interchange Pr | 9e-06 | ||
| 2nyv_A | 222 | X-Ray Crystal Structure Of A Phosphoglycolate Phosp | 1e-05 | ||
| 3dv9_A | 247 | Putative Beta-Phosphoglucomutase From Bacteroides V | 2e-05 | ||
| 2h19_A | 143 | Crystal Structure Of Resa Cys77ala Variant Length = | 3e-05 | ||
| 2h1a_A | 143 | Resa C74a Variant Length = 143 | 3e-05 | ||
| 2yy6_A | 213 | Crystal Structure Of The Phosphoglycolate Phosphata | 3e-05 | ||
| 3kbb_A | 216 | Crystal Structure Of Putative Beta-Phosphoglucomuta | 5e-05 | ||
| 2hi0_A | 240 | Crystal Structure Of Putative Phosphoglycolate Phos | 6e-05 | ||
| 1l0q_A | 391 | Tandem Yvtn Beta-Propeller And Pkd Domains From An | 6e-05 | ||
| 3hrp_A | 409 | Crystal Structure Of Structural Genomics Protein Of | 9e-05 | ||
| 4evm_A | 138 | 1.5 Angstrom Crystal Structure Of Soluble Domain Of | 2e-04 | ||
| 2h1g_A | 143 | Resa C74aC77A Length = 143 | 3e-04 | ||
| 3l5k_A | 250 | The Crystal Structure Of Human Haloacid Dehalogenas | 3e-04 | ||
| 2fdr_A | 229 | Crystal Structure Of Conserved Haloacid Dehalogenas | 3e-04 | ||
| 3kcm_A | 154 | The Crystal Structure Of Thioredoxin Protein From G | 5e-04 | ||
| 2f9s_A | 151 | 2nd Crystal Structure Of A Soluble Domain Of Resa I | 7e-04 | ||
| 1jfu_A | 186 | Crystal Structure Of The Soluble Domain Of Tlpa Fro | 7e-04 |
| >pdb|2HYX|A Chain A, Structure Of The C-Terminal Domain Of Dipz From Mycobacterium Tuberculosis Length = 352 | Back alignment and structure |
|
| >pdb|3E58|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From Streptococcus Thermophilus Length = 214 | Back alignment and structure |
|
| >pdb|1TE2|A Chain A, Putative Phosphatase Ynic From Escherichia Coli K12 Length = 226 | Back alignment and structure |
|
| >pdb|4G9B|A Chain A, Crystal Structure Of Beta-Phosphoglucomutase Homolog From Escherichia Coli, Target Efi-501172, With Bound Mg, Open Lid Length = 243 | Back alignment and structure |
|
| >pdb|2L5O|A Chain A, Solution Structure Of A Putative Thioredoxin From Neisseria Meningitidis Length = 153 | Back alignment and structure |
|
| >pdb|3QYP|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides Thetaiotaomicron, Glu47asn Mutant Complexed With Calcium And Phosphate Length = 243 | Back alignment and structure |
|
| >pdb|3QUB|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides Thetaiotaomicron, Glu47ala Mutant Complexed With Sulfate Length = 243 | Back alignment and structure |
|
| >pdb|3QUQ|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides Thetaiotaomicron, An Open Cap Conformation Length = 243 | Back alignment and structure |
|
| >pdb|3S6J|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas Syringae Length = 233 | Back alignment and structure |
|
| >pdb|3R9K|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides Thetaiotaomicron, Glu47asp Mutant Complexed With Sulfate, A Closed Cap Conformation Length = 243 | Back alignment and structure |
|
| >pdb|1O03|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An Enzyme Catalyzed Phosphoryl Transfer Reaction Observed On Cocrystallization With Glucose 6-Phosphate Length = 221 | Back alignment and structure |
|
| >pdb|3QU5|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides Thetaiotaomicron, Asp11asn Mutant Length = 243 | Back alignment and structure |
|
| >pdb|3QUT|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides Thetaiotaomicron, Asp13asn Mutant, An Open Cap Conformation Length = 243 | Back alignment and structure |
|
| >pdb|4EX6|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase Alnb Length = 237 | Back alignment and structure |
|
| >pdb|3FM9|A Chain A, Analysis Of The Structural Determinants Underlying Discrimination Between Substrate And Solvent In Beta- Phosphoglucomutase Catalysis Length = 221 | Back alignment and structure |
|
| >pdb|4EEK|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From Deinococcus Radiodurans R1 (Target Efi-501256) With Bound Phosphate And Sodium Length = 259 | Back alignment and structure |
|
| >pdb|3QU4|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides Thetaiotaomicron, Asp13ala Mutant Length = 243 | Back alignment and structure |
|
| >pdb|4GIB|A Chain A, 2.27 Angstrom Crystal Structure Of Beta-Phosphoglucomutase (Pgmb) From Clostridium Difficile Length = 250 | Back alignment and structure |
|
| >pdb|1LVH|A Chain A, The Structure Of Phosphorylated Beta-phosphoglucomutase From Lactoccocus Lactis To 2.3 Angstrom Resolution Length = 221 | Back alignment and structure |
|
| >pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site Motif (Cphc) Length = 143 | Back alignment and structure |
|
| >pdb|3C73|A Chain A, Structure Of Cehc Variant Resa Length = 140 | Back alignment and structure |
|
| >pdb|2H1B|A Chain A, Resa E80q Length = 143 | Back alignment and structure |
|
| >pdb|3NAS|A Chain A, The Crystal Structure Of Beta-Phosphoglucomutase From Bacillus Subtilis Length = 233 | Back alignment and structure |
|
| >pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The Oxidised Form Length = 143 | Back alignment and structure |
|
| >pdb|2B5X|A Chain A, Solution Structure Of A Thioredoxin-Like Protein In The Reduced Form Length = 148 | Back alignment and structure |
|
| >pdb|3OR5|A Chain A, Crystal Structure Of Thiol:disulfide Interchange Protein, Thioredoxin Family Protein From Chlorobium Tepidum Tls Length = 165 | Back alignment and structure |
|
| >pdb|2NYV|A Chain A, X-Ray Crystal Structure Of A Phosphoglycolate Phosphatase From Aquifex Aeolicus Length = 222 | Back alignment and structure |
|
| >pdb|3DV9|A Chain A, Putative Beta-Phosphoglucomutase From Bacteroides Vulgatus Length = 247 | Back alignment and structure |
|
| >pdb|2H19|A Chain A, Crystal Structure Of Resa Cys77ala Variant Length = 143 | Back alignment and structure |
|
| >pdb|2H1A|A Chain A, Resa C74a Variant Length = 143 | Back alignment and structure |
|
| >pdb|2YY6|A Chain A, Crystal Structure Of The Phosphoglycolate Phosphatase From Aquifex Aeolicus Vf5 Length = 213 | Back alignment and structure |
|
| >pdb|3KBB|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From Thermotoga Maritima Length = 216 | Back alignment and structure |
|
| >pdb|2HI0|A Chain A, Crystal Structure Of Putative Phosphoglycolate Phosphatase (Yp_619066.1) From Lactobacillus Delbrueckii Subsp. Bulgaricus Atcc Baa-365 At 1.51 A Resolution Length = 240 | Back alignment and structure |
|
| >pdb|1L0Q|A Chain A, Tandem Yvtn Beta-Propeller And Pkd Domains From An Archaeal Surface Layer Protein Length = 391 | Back alignment and structure |
|
| >pdb|3HRP|A Chain A, Crystal Structure Of Structural Genomics Protein Of Unknown Function (np_812590.1) From Bacteroides Thetaiotaomicron Vpi-5482 At 1.70 A Resolution Length = 409 | Back alignment and structure |
|
| >pdb|4EVM|A Chain A, 1.5 Angstrom Crystal Structure Of Soluble Domain Of Membrane-Anchored Thioredoxin Family Protein From Streptococcus Pneumoniae Strain Canada Mdr_19a Length = 138 | Back alignment and structure |
|
| >pdb|2H1G|A Chain A, Resa C74aC77A Length = 143 | Back alignment and structure |
|
| >pdb|3L5K|A Chain A, The Crystal Structure Of Human Haloacid Dehalogenase-Like Hydrolase Domain Containing 1a (Hdhd1a) Length = 250 | Back alignment and structure |
|
| >pdb|2FDR|A Chain A, Crystal Structure Of Conserved Haloacid Dehalogenase-like Protein Of Unknown Function Atu0790 From Agrobacterium Tumefaciens Str. C58 Length = 229 | Back alignment and structure |
|
| >pdb|3KCM|A Chain A, The Crystal Structure Of Thioredoxin Protein From Geobacter Metallireducens Length = 154 | Back alignment and structure |
|
| >pdb|2F9S|A Chain A, 2nd Crystal Structure Of A Soluble Domain Of Resa In The Oxidised Form Length = 151 | Back alignment and structure |
|
| >pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From Bradyrhizobium Japonicum Length = 186 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1089 | |||
| 2hyx_A | 352 | Protein DIPZ; thioredoxin fold, jelly-roll, struct | 1e-70 | |
| 1te2_A | 226 | Putative phosphatase; structural genomics, phospha | 2e-62 | |
| 3e58_A | 214 | Putative beta-phosphoglucomutase; structu genomics | 5e-62 | |
| 3dv9_A | 247 | Beta-phosphoglucomutase; structural genomics, APC6 | 1e-61 | |
| 3s6j_A | 233 | Hydrolase, haloacid dehalogenase-like family; stru | 2e-61 | |
| 4g9b_A | 243 | Beta-PGM, beta-phosphoglucomutase; HAD, putative p | 4e-60 | |
| 3qxg_A | 243 | Inorganic pyrophosphatase; hydrolase, magnesium bi | 8e-59 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 6e-58 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 8e-22 | |
| 2qlt_A | 275 | (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, sac | 4e-54 | |
| 2pib_A | 216 | Phosphorylated carbohydrates phosphatase TM_1254; | 2e-52 | |
| 2wf7_A | 221 | Beta-PGM, beta-phosphoglucomutase; transition stat | 2e-52 | |
| 3nas_A | 233 | Beta-PGM, beta-phosphoglucomutase; PSI, structural | 5e-52 | |
| 2b5x_A | 148 | YKUV protein, TRXY; thioredoxin-like, oxidoreducta | 3e-51 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 2e-50 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 3e-26 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 8e-18 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 5e-17 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 2e-07 | |
| 4eek_A | 259 | Beta-phosphoglucomutase-related protein; hydrolase | 5e-49 | |
| 2fdr_A | 229 | Conserved hypothetical protein; SAD, structural ge | 2e-48 | |
| 3l5k_A | 250 | Protein GS1, haloacid dehalogenase-like hydrolase | 6e-47 | |
| 3iru_A | 277 | Phoshonoacetaldehyde hydrolase like protein; phosp | 3e-46 | |
| 3eyt_A | 158 | Uncharacterized protein SPOA0173; thioredoxin-like | 8e-46 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 2e-45 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 5e-32 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 2e-25 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 4e-11 | |
| 3lor_A | 160 | Thiol-disulfide isomerase and thioredoxins; PSI, M | 7e-44 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 2e-39 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 9e-29 | |
| 1swv_A | 267 | Phosphonoacetaldehyde hydrolase; HAD enzyme superf | 8e-38 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 8e-37 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 1e-18 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 4e-11 | |
| 2hcf_A | 234 | Hydrolase, haloacid dehalogenase-like family; NP_6 | 2e-31 | |
| 2fi1_A | 190 | Hydrolase, haloacid dehalogenase-like family; stru | 3e-31 | |
| 3kzx_A | 231 | HAD-superfamily hydrolase, subfamily IA, variant; | 4e-31 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 7e-31 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 2e-28 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 1e-15 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 4e-05 | |
| 2l5o_A | 153 | Putative thioredoxin; structural genomics, unknown | 1e-30 | |
| 3d6j_A | 225 | Putative haloacid dehalogenase-like hydrolase; str | 3e-29 | |
| 2h30_A | 164 | Thioredoxin, peptide methionine sulfoxide reductas | 2e-27 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 3e-26 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 3e-25 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 5e-15 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 3e-26 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 5e-24 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 5e-20 | |
| 2hdo_A | 209 | Phosphoglycolate phosphatase; NP_784602.1, structu | 4e-26 | |
| 3sd7_A | 240 | Putative phosphatase; structural genomics, haloaci | 4e-26 | |
| 3mc1_A | 226 | Predicted phosphatase, HAD family; PSI2, NYSGXRC, | 4e-26 | |
| 2go7_A | 207 | Hydrolase, haloacid dehalogenase-like family; stru | 5e-26 | |
| 2zg6_A | 220 | Putative uncharacterized protein ST2620, probable | 9e-26 | |
| 2nyv_A | 222 | Pgpase, PGP, phosphoglycolate phosphatase; structu | 7e-25 | |
| 4evm_A | 138 | Thioredoxin family protein; structural genomics, n | 2e-24 | |
| 2hi0_A | 240 | Putative phosphoglycolate phosphatase; YP_619066.1 | 1e-23 | |
| 3m9l_A | 205 | Hydrolase, haloacid dehalogenase-like family; HAD | 2e-23 | |
| 2hsz_A | 243 | Novel predicted phosphatase; structural genomics, | 3e-23 | |
| 2oda_A | 196 | Hypothetical protein pspto_2114; haloacid dehaloge | 2e-22 | |
| 2f9s_A | 151 | Thiol-disulfide oxidoreductase RESA; thioredoxin-l | 4e-22 | |
| 3k1z_A | 263 | Haloacid dehalogenase-like hydrolase domain-conta | 2e-21 | |
| 3or5_A | 165 | Thiol:disulfide interchange protein, thioredoxin p | 4e-21 | |
| 3raz_A | 151 | Thioredoxin-related protein; structural genomics, | 4e-21 | |
| 2ah5_A | 210 | COG0546: predicted phosphatases; MCSG, structural | 4e-21 | |
| 3erw_A | 145 | Sporulation thiol-disulfide oxidoreductase A; thio | 6e-21 | |
| 2lja_A | 152 | Putative thiol-disulfide oxidoreductase; structura | 7e-21 | |
| 2pr7_A | 137 | Haloacid dehalogenase/epoxide hydrolase family; NP | 8e-21 | |
| 3gl3_A | 152 | Putative thiol:disulfide interchange protein DSBE; | 2e-20 | |
| 1lu4_A | 136 | Soluble secreted antigen MPT53; thioredoxin-like f | 2e-20 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 5e-20 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 3e-15 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 3e-14 | |
| 3kcm_A | 154 | Thioredoxin family protein; SGX, thioredoxin prote | 8e-20 | |
| 2hoq_A | 241 | Putative HAD-hydrolase PH1655; haloacid dehalogena | 1e-19 | |
| 2om6_A | 235 | Probable phosphoserine phosphatase; rossmann fold, | 2e-19 | |
| 3cnh_A | 200 | Hydrolase family protein; NP_295428.1, predicted h | 3e-19 | |
| 2lrn_A | 152 | Thiol:disulfide interchange protein; structural ge | 2e-18 | |
| 3ha9_A | 165 | Uncharacterized thioredoxin-like protein; PSI, MCS | 2e-18 | |
| 4fo5_A | 143 | Thioredoxin-like protein; AHPC/TSA family protein, | 6e-18 | |
| 3hcz_A | 148 | Possible thiol-disulfide isomerase; APC61559.2, cy | 7e-18 | |
| 1zzo_A | 136 | RV1677; thioredoxin fold, structural genomics, PSI | 2e-17 | |
| 1qyi_A | 384 | ZR25, hypothetical protein; structural genomics, P | 2e-17 | |
| 2ls5_A | 159 | Uncharacterized protein; structural genomics, unkn | 3e-17 | |
| 3qnm_A | 240 | Haloacid dehalogenase-like hydrolase; structural g | 5e-17 | |
| 2b0c_A | 206 | Putative phosphatase; alpha-D-glucose-1-phosphate, | 6e-17 | |
| 3hdc_A | 158 | Thioredoxin family protein; ATCC53774, DSM 7210, , | 1e-16 | |
| 3lwa_A | 183 | Secreted thiol-disulfide isomerase; thioredoxin, P | 2e-16 | |
| 3ewl_A | 142 | Uncharacterized conserved protein BF1870; alpha-be | 2e-16 | |
| 1jfu_A | 186 | Thiol:disulfide interchange protein TLPA; thioredo | 2e-16 | |
| 3fkf_A | 148 | Thiol-disulfide oxidoreductase; structural genomic | 3e-16 | |
| 2lrt_A | 152 | Uncharacterized protein; structural genomics, thio | 4e-16 | |
| 2i6x_A | 211 | Hydrolase, haloacid dehalogenase-like family; HAD | 4e-16 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 4e-16 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 5e-14 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 3e-13 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 1e-08 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 2e-04 | |
| 2gfh_A | 260 | Haloacid dehalogenase-like hydrolase domain conta; | 5e-16 | |
| 3ed5_A | 238 | YFNB; APC60080, bacillus subtilis subsp. subtilis | 9e-16 | |
| 3eur_A | 142 | Uncharacterized protein; PSI2,MCSG, conserved prot | 1e-15 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 3e-15 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 9e-15 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 3e-13 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 1e-12 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 1e-11 | |
| 3fw2_A | 150 | Thiol-disulfide oxidoreductase; structural genomic | 4e-15 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 3e-14 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 1e-13 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 4e-05 | |
| 2p11_A | 231 | Hypothetical protein; putative haloacid dehalogena | 6e-14 | |
| 3u26_A | 234 | PF00702 domain protein; structural genomics, PSI-b | 6e-14 | |
| 3ib6_A | 189 | Uncharacterized protein; structural genomics, unkn | 1e-13 | |
| 3ia1_A | 154 | THIO-disulfide isomerase/thioredoxin; oxidoreducta | 2e-13 | |
| 1zrn_A | 232 | L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseud | 2e-13 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 3e-13 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 7e-11 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 8e-07 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 3e-13 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 1e-12 | |
| 4dcc_A | 229 | Putative haloacid dehalogenase-like hydrolase; mag | 9e-13 | |
| 1i5g_A | 144 | Tryparedoxin II; electron transport; HET: TS5; 1.4 | 1e-12 | |
| 3smv_A | 240 | S-(-)-azetidine-2-carboxylate hydrolase; haloacid | 3e-12 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 5e-12 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 2e-09 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 1e-05 | |
| 2no4_A | 240 | (S)-2-haloacid dehalogenase IVA; HAD superfamily, | 1e-11 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 2e-11 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 9e-10 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 1e-05 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 3e-05 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 3e-04 | |
| 1o73_A | 144 | Tryparedoxin; electron transport, trypanosomatid, | 2e-11 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-11 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-05 | |
| 2lus_A | 143 | Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci | 2e-11 | |
| 3s9f_A | 165 | Tryparedoxin; thioredoxin fold, disulfide reductas | 4e-11 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 8e-11 | |
| 1o8x_A | 146 | Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot | 2e-10 | |
| 1qq5_A | 253 | Protein (L-2-haloacid dehalogenase); hydrolase; 1. | 4e-10 | |
| 1yns_A | 261 | E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo | 2e-09 | |
| 2pke_A | 251 | Haloacid delahogenase-like family hydrolase; NP_63 | 3e-09 | |
| 3ddh_A | 234 | Putative haloacid dehalogenase-like family hydrol; | 1e-08 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 1e-08 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 9e-06 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 3e-05 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 2e-08 | |
| 3nuq_A | 282 | Protein SSM1, putative nucleotide phosphatase; sup | 2e-08 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 3e-08 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 2e-06 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 3e-05 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 6e-08 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 2e-06 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 7e-06 | |
| 2l57_A | 126 | Uncharacterized protein; structural genomics, unkn | 7e-08 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 3e-07 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 3e-06 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 4e-07 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 1e-06 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 3e-04 | |
| 3i28_A | 555 | Epoxide hydrolase 2; aromatic hydrocarbons catabol | 1e-06 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 3e-06 | |
| 2wm8_A | 187 | MDP-1, magnesium-dependent phosphatase 1; haloacid | 3e-06 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 6e-06 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 3e-05 | |
| 3l8h_A | 179 | Putative haloacid dehalogenase-like hydrolase; HAD | 6e-06 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 1e-05 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 1e-04 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 4e-05 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 2e-04 | |
| 2w43_A | 201 | Hypothetical 2-haloalkanoic acid dehalogenase; hyd | 5e-05 | |
| 2o2x_A | 218 | Hypothetical protein; structural genomics, joint c | 7e-05 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 9e-05 | |
| 2kuc_A | 130 | Putative disulphide-isomerase; structural genomics | 9e-05 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 2e-04 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 2e-04 | |
| 2es7_A | 142 | Q8ZP25_salty, putative thiol-disulfide isomerase a | 3e-04 | |
| 3f9u_A | 172 | Putative exported cytochrome C biogenesis-related; | 3e-04 | |
| 1gh2_A | 107 | Thioredoxin-like protein; redox-active center, ele | 4e-04 | |
| 3m9j_A | 105 | Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} | 4e-04 | |
| 3d22_A | 139 | TRXH4, thioredoxin H-type; electron transport, cyt | 5e-04 | |
| 3qfa_C | 116 | Thioredoxin; protein-protein complex, rossmann fol | 5e-04 | |
| 1ti3_A | 113 | Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul | 8e-04 | |
| 1xfl_A | 124 | Thioredoxin H1; AT3G51030, structural genomics, pr | 8e-04 | |
| 3fk8_A | 133 | Disulphide isomerase; APC61824.1, xylella fastidio | 8e-04 |
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} Length = 352 | Back alignment and structure |
|---|
Score = 239 bits (610), Expect = 1e-70
Identities = 72/333 (21%), Positives = 115/333 (34%), Gaps = 45/333 (13%)
Query: 399 EQTEGGSSQSERIQQFVNYISDVENRKTTPIVPEFPAKLDWLNT---APLQFRRDLKGKV 455
EQ G + + Q N ++ P+ WLNT P+ + L+GKV
Sbjct: 26 EQLNLGGIVNAQNAQLSNCSDGAAQLESCGTAPDLKGITGWLNTPGNKPIDLK-SLRGKV 84
Query: 456 VVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGI 515
V++DFW Y CINC +P + + YKD V+GVH+ ++ EK + GI
Sbjct: 85 VLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGI 144
Query: 516 SHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFYGKK 575
S+P+ D + W WP ++ G + GEG + LV L
Sbjct: 145 SYPIALDNNYATWTNYRNRYWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQLLNDAKPG 204
Query: 576 KLLDNTPLPLSLEKDNDPRLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFI 635
L + D PR +P + G ++V
Sbjct: 205 VKLPQPSSTTT--PDLTPRAALTPETYFG-----------------VGKVV--------- 236
Query: 636 VQIGSSGEEGLRDGSFDDATFNRPQGLAYNA-------KKNLLYVADTENHALREIDFVN 688
G +GS A F+ P LA N+ + N A ++++
Sbjct: 237 ---NYGGGGAYDEGS---AVFDYPPSLAANSFALRGRWALDYQGATSDGNDAAIKLNYHA 290
Query: 689 DTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDV 721
V + G + + G+ T + P
Sbjct: 291 KDVYIVVGGTGTLTVVRDGKPATLPISGPPTTH 323
|
| >1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein S initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6 Length = 226 | Back alignment and structure |
|---|
Score = 210 bits (538), Expect = 2e-62
Identities = 59/221 (26%), Positives = 107/221 (48%), Gaps = 4/221 (1%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLP-FMGTGEANFLGGVASVK 136
++ A +FDMDG+L +SE RA +DV A +GV+++ + LP +G + + +
Sbjct: 8 QILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRRNELPDTLGLRIDMVVDLWYARQ 67
Query: 137 GVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVD 196
G + +R + + + PG E + CK +GL V +AS++ ++
Sbjct: 68 PWNGPSRQEVVERVIARAISLVEE--TRPLLPGVREAVALCKEQGLLVGLASASPLHMLE 125
Query: 197 ANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAK 256
L L FDA+ SA+ KP P ++L + L V C+ +ED++ G+ A+K
Sbjct: 126 KVLTMFDLR-DSFDALASAEKLPYSKPHPQVYLDCAAKLGVDPLTCVALEDSVNGMIASK 184
Query: 257 AAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTG 297
AA+MR I V ++ + ++ + ++ D+L G
Sbjct: 185 AARMRSIVVPAPEAQNDPRFVLANVKLSSLTELTAKDLLGG 225
|
| >3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311} Length = 214 | Back alignment and structure |
|---|
Score = 209 bits (534), Expect = 5e-62
Identities = 54/199 (27%), Positives = 94/199 (47%), Gaps = 3/199 (1%)
Query: 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGV 138
V A++FDMDGVL ++E+ + G+ + F+G + +
Sbjct: 5 VEAIIFDMDGVLFDTEKYYYDRRASFLGQKGISIDHLPPSFFIGGNTKQVWENILRDEYD 64
Query: 139 KGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDAN 198
K +D ++ + Y P + FP L+++N+ KS+GL++ +ASS+ + +
Sbjct: 65 K-WDVSTLQEEY-NTYKQNNPLPYKELIFPDVLKVLNEVKSQGLEIGLASSSVKADIFRA 122
Query: 199 LAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAA 258
L L FD ++S + F+ KP P+I+L+A K LNV S ++IED+ G+ A AA
Sbjct: 123 LEENRLQ-GFFDIVLSGEEFKESKPNPEIYLTALKQLNVQASRALIIEDSEKGIAAGVAA 181
Query: 259 QMRCIAVTTTLSEERLKEA 277
+ A+ A
Sbjct: 182 DVEVWAIRDNEFGMDQSAA 200
|
| >3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus} Length = 247 | Back alignment and structure |
|---|
Score = 209 bits (534), Expect = 1e-61
Identities = 57/218 (26%), Positives = 97/218 (44%), Gaps = 7/218 (3%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKG 137
+ AVLFDMDGVL +S + + G ++ E+ G A+ + V+ +
Sbjct: 22 DLKAVLFDMDGVLFDSMPNHAESWHKIMKRFGFGLSREEAYMHEGRTGASTINIVSRRER 81
Query: 138 VKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDA 197
+E K ++ +++ K PGALE++ + KS+GL V + + + +
Sbjct: 82 GHDA-TEEEIKAIYQAKTEEFNKCPKAERMPGALEVLTKIKSEGLTPMVVTGSGQTSLLD 140
Query: 198 NLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKA 257
L + + +V+A + KP P+ +L A K +E +VIE+A GVQA A
Sbjct: 141 RLNHNFPGIFQANLMVTAFDVKYGKPNPEPYLMALKKGGFKPNEALVIENAPLGVQAGVA 200
Query: 258 AQMRCIAVTTTLS-EERLKEASPSLIRKEIGSVSLNDI 294
A + IAV T + L +L+ S+ D
Sbjct: 201 AGIFTIAVNTGPLHDNVLLNEGANLLFH-----SMPDF 233
|
| >3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV} Length = 233 | Back alignment and structure |
|---|
Score = 208 bits (531), Expect = 2e-61
Identities = 49/207 (23%), Positives = 88/207 (42%), Gaps = 5/207 (2%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKG 137
++ +FD+DG L +S + A + + + + +G L ++ G
Sbjct: 5 PQTSFIFDLDGTLTDSVYQNVAAWKEALDAENIPLAMWRIHRKIGMSGGLMLKSLSRETG 64
Query: 138 VKGFDSEAAKKRFFEIYLDKYAKPNSGI-GFPGALELINQCKSKGLKVAVASSADRIKVD 196
+ ++ +R E + Y + I PGA+EL+ + LK +A+S
Sbjct: 65 MS--ITDEQAERLSEKHAQAYERLQHQIIALPGAVELLETLDKENLKWCIATSGGIDTAT 122
Query: 197 ANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAK 256
NL A L IV+ D KP PD+FL+A+K + P EC+VI DA+ + AA+
Sbjct: 123 INLKALKLD-INKINIVTRDDVSYGKPDPDLFLAAAKKIGAPIDECLVIGDAIWDMLAAR 181
Query: 257 AAQMRCIAVTT-TLSEERLKEASPSLI 282
+ + + + L+ A +
Sbjct: 182 RCKATGVGLLSGGYDIGELERAGALRV 208
|
| >4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative phosphoglucomutase, enzyme function initiative structural genomics, isomerase; 1.70A {Escherichia coli} Length = 243 | Back alignment and structure |
|---|
Score = 205 bits (523), Expect = 4e-60
Identities = 54/205 (26%), Positives = 90/205 (43%), Gaps = 7/205 (3%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKG 137
K+ V+FD+DGV+ ++ +A + AE+G+ + + G L + G
Sbjct: 4 KLQGVIFDLDGVITDTAHLHFQAWQQIAAEIGISIDAQFNESLKGISRDESLRRILQHGG 63
Query: 138 VKGFDSEAAKKRFF----EIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRI 193
+G + + + +Y+ + PG L+ +++ + V +AS +
Sbjct: 64 KEGDFNSQERAQLAYRKNLLYVHSLRELTVNAVLPGIRSLLADLRAQQISVGLASVSLNA 123
Query: 194 KVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQ 253
LAA L F A +N KP P+IFL+A L VP CI IEDA AG+
Sbjct: 124 --PTILAALELR-EFFTFCADASQLKNSKPDPEIFLAACAGLGVPPQACIGIEDAQAGID 180
Query: 254 AAKAAQMRCIAVTTTLSEERLKEAS 278
A A+ MR + + L+ +L S
Sbjct: 181 AINASGMRSVGIGAGLTGAQLLLPS 205
|
| >3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW YORK research center for structural genomics; HET: TLA; 1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A 3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A 3quc_A 3qub_A 3qu4_A Length = 243 | Back alignment and structure |
|---|
Score = 201 bits (513), Expect = 8e-59
Identities = 57/219 (26%), Positives = 97/219 (44%), Gaps = 7/219 (3%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKG 137
K+ AVLFDMDGVL NS A V G++++ E+ G A+ + V +
Sbjct: 23 KLKAVLFDMDGVLFNSMPYHSEAWHQVMKTHGLDLSREEAYMHEGRTGASTINIVFQ-RE 81
Query: 138 VKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDA 197
+ ++ + + + PGA EL+ + KS+GL V + + ++ +
Sbjct: 82 LGKEATQEEIESIYHEKSILFNSYPEAERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLE 141
Query: 198 NLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKA 257
L + + +V+A + KP P+ +L A K + E +VIE+A GV+A
Sbjct: 142 RLEHNFPGMFHKELMVTAFDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHK 201
Query: 258 AQMRCIAVTTT-LSEERLKEASPSLIRKEIGSVSLNDIL 295
A + IAV T L + L +A L+ S+ +
Sbjct: 202 AGIFTIAVNTGPLDGQVLLDAGADLLFP-----SMQTLC 235
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409 | Back alignment and structure |
|---|
Score = 204 bits (521), Expect = 6e-58
Identities = 65/364 (17%), Positives = 112/364 (30%), Gaps = 55/364 (15%)
Query: 590 DNDPRLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDG 649
DN+ +P + PG I ++ + ++ + GS+ ++G DG
Sbjct: 67 DNNTLYCLAPRQLPGGNRIKVIVDGKEVTTDGTFKYEQAQNVSTIS---GSASKDGNDDG 123
Query: 650 SFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGE- 708
A F G+A + ++ +R I ++ V T G KG +
Sbjct: 124 DLASAKFKYMWGIAAVGNNTV-LAYQRDDPRVRLISVDDNKV-TTVHPGFKGGKPAVTKD 181
Query: 709 ------------------------------KGTSQLLNSPWDVCYKPINEKVYIAMAGQH 738
+ S V E +Y + ++
Sbjct: 182 KQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKN 241
Query: 739 QIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIR 798
+ S + P I D Y++D SS+
Sbjct: 242 -FGRFNVKTQEVTLIKQ-------LELSGSLGTNPGPYLIYYFVDS-NFYMSDQNLSSVY 292
Query: 799 ALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSY-N 857
+ G G + +DG+ E L P G+ ++G Y+ D +
Sbjct: 293 KIT-PDGECEWFCGSAT-------QKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKG 344
Query: 858 HKIKKLDPASNRVSTLAGIG-KAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIR 916
+ ++KLD VST+AG A DG L A + P I G +IA+ IR
Sbjct: 345 YCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIR 404
Query: 917 YLDL 920
+
Sbjct: 405 KYAV 408
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409 | Back alignment and structure |
|---|
Score = 98.5 bits (245), Expect = 8e-22
Identities = 38/315 (12%), Positives = 81/315 (25%), Gaps = 51/315 (16%)
Query: 610 ILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKN 669
I+ F +D + ++ D + + L P+ L +
Sbjct: 35 IVKGSNFGTDKSKVKVYFVDEAAERLSTVIGIDNNTL--------YCLAPRQLPGG-NRI 85
Query: 670 LLYVADTENHALREIDFV-NDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINE 728
+ V E + V T++G+ +K + G S W + N
Sbjct: 86 KVIVDGKEVTTDGTFKYEQAQNVSTISGSASKDGNDDGD--LASAKFKYMWGIAAVG-NN 142
Query: 729 KVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIY 788
V ++ S D G ++ + I +Y
Sbjct: 143 TVLAYQRDDPRVRLISVDDNKVTTVHPGFK----GGKPAVTKDKQRVYSIGWEGT-HTVY 197
Query: 789 VADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNG 848
V S + G + G +
Sbjct: 198 VYMKASGWAPTRIGQLGSTF---------------SGKIGAV-----------ALDETEE 231
Query: 849 QIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIA 908
+Y DS + + + + V+ + + +G P I + N +++
Sbjct: 232 WLYFVDSNKNFGRF-NVKTQEVTLIKQLELSGS------LGTNPGPYLIYYFVDSNFYMS 284
Query: 909 DTNNNIIRYLDLNKE 923
D N + + + + E
Sbjct: 285 DQNLSSVYKITPDGE 299
|
| >2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, saccharom cerevisiae, structural genomics, PSI-2, protein structure initiative; 1.60A {Saccharomyces cerevisiae} Length = 275 | Back alignment and structure |
|---|
Score = 189 bits (481), Expect = 4e-54
Identities = 53/230 (23%), Positives = 87/230 (37%), Gaps = 17/230 (7%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKG 137
K++A LFD+DG + S+ D + G + + A
Sbjct: 34 KINAALFDVDGTIIISQPAIAAFWRDFGKDKPYFDAEHVIHISHGWRTYDAIAKFA---- 89
Query: 138 VKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGL-KVAVASSADRIKVD 196
F E + +KY + I PGA++L N + K AVA+S R
Sbjct: 90 -PDFADEEYVNKLEGEIPEKYGE--HSIEVPGAVKLCNALNALPKEKWAVATSGTRDMAK 146
Query: 197 ANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPT-------SECIVIEDAL 249
+ + ++A+ + KP P+ +L L P S+ +V EDA
Sbjct: 147 KWFDILKIK--RPEYFITANDVKQGKPHPEPYLKGRNGLGFPINEQDPSKSKVVVFEDAP 204
Query: 250 AGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTGGG 299
AG+ A KAA + + + TT + LKE +I K S+ + +
Sbjct: 205 AGIAAGKAAGCKIVGIATTFDLDFLKEKGCDIIVKNHESIRVGEYNAETD 254
|
| >2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue, haloacid dehalogenase superfamily, isomerase, phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis} PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A* 1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A Length = 221 | Back alignment and structure |
|---|
Score = 182 bits (464), Expect = 2e-52
Identities = 61/218 (27%), Positives = 98/218 (44%), Gaps = 13/218 (5%)
Query: 81 AVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLP-FMGTGEANFLGGVASVKGVK 139
AVLFD+DGV+ ++ E RA + E+G+ F G + L + + K
Sbjct: 4 AVLFDLDGVITDTAEYHFRAWKALAEEIGINGVDRQFNEQLKGVSREDSLQKILDLADKK 63
Query: 140 GFDSEAAKK---RFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVD 196
+E K+ R + Y+ + +PG L+L+ +S +K+A+AS++
Sbjct: 64 -VSAEEFKELAKRKNDNYVKMIQDVSPADVYPGILQLLKDLRSNKIKIALASASKNG--P 120
Query: 197 ANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAK 256
L L FDAI KPAPDIF++A+ + V SE I +ED+ AG+QA K
Sbjct: 121 FLLERMNLT-GYFDAIADPAEVAASKPAPDIFIAAAHAVGVAPSESIGLEDSQAGIQAIK 179
Query: 257 AAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDI 294
+ I V E L + +I + +L +
Sbjct: 180 DSGALPIGVG---RPEDLGDD--IVIVPDTSHYTLEFL 212
|
| >3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics, protein structure initiative, NEW research center for structural genomics; 3.00A {Bacillus subtilis} Length = 233 | Back alignment and structure |
|---|
Score = 181 bits (462), Expect = 5e-52
Identities = 53/203 (26%), Positives = 88/203 (43%), Gaps = 10/203 (4%)
Query: 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGV 138
+ AV+FD+DGV+ ++ E A + ++ + + G L + G
Sbjct: 2 LKAVIFDLDGVITDTAEYHFLAWKHIAEQIDIPFDRDMNERLKGISREESLESILIFGGA 61
Query: 139 KGFDSEAAKKRFF----EIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIK 194
+ + A K+ Y +K PG L+ Q K++ +K+ +ASS+
Sbjct: 62 ETKYTNAEKQELMHRKNRDYQMLISKLTPEDLLPGIGRLLCQLKNENIKIGLASSSRNA- 120
Query: 195 VDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQA 254
L + F AIV KP PDIFL+A+ +L+V ++C IEDA AG+ A
Sbjct: 121 -PKILRRLAII-DDFHAIVDPTTLAKGKPDPDIFLTAAAMLDVSPADCAAIEDAEAGISA 178
Query: 255 AKAAQMRCIAVTTTLSEERLKEA 277
K+A M + V + + A
Sbjct: 179 IKSAGMFAVGVGQG---QPMLGA 198
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A Length = 148 | Back alignment and structure |
|---|
Score = 175 bits (447), Expect = 3e-51
Identities = 35/139 (25%), Positives = 56/139 (40%), Gaps = 2/139 (1%)
Query: 431 PEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVV 490
PE + WLN + + + K ++ FW+ C C +P + KY+D VV
Sbjct: 8 PELTGEKAWLNGEVTREQ-LIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ-LNVV 65
Query: 491 GVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLA 550
VH + +++ D I+ + I+ P+ D D L P + V G+L
Sbjct: 66 AVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRH 125
Query: 551 QLAGEGHRKDLDDLVEAAL 569
AG K L+ V L
Sbjct: 126 FQAGGSGMKMLEKRVNRVL 144
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430 | Back alignment and structure |
|---|
Score = 183 bits (466), Expect = 2e-50
Identities = 67/346 (19%), Positives = 106/346 (30%), Gaps = 64/346 (18%)
Query: 622 HNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDD-ATFNRPQGLAYNAKKNLLYVADTENHA 680
+++VT G + + L+DG FDD F L+++ K + E H
Sbjct: 104 QKKMLVTTFLGT---MYDGNTKYDLKDGPFDDCGGFGGAVWLSFDPKNHNHLYLVGEQHP 160
Query: 681 LREIDFVNDTVRTLAGNGTKG--------------SDYQGGEKGTSQLL----------- 715
R IDF + V T+ +K ++ Q + +
Sbjct: 161 TRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVIT 220
Query: 716 -----NSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNT 770
+ PIN ++Y Q++ + E +
Sbjct: 221 ELTKGQNCNGAETHPINGELYFNSWNAGQVFR----------YDFTTQETTPLFT---IQ 267
Query: 771 SFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGM 830
I P Y+ I + RL I DG+
Sbjct: 268 DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPY--IVCGQQGAKDWVDGV 325
Query: 831 GSEVLLQHPLGVYCAKN---------GQIYVADSYNHKIKKLDPASNRVSTLAGIGK--- 878
G + + P KN Y D NH I+ L P RV+T AG G
Sbjct: 326 GKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAGRGSNGT 384
Query: 879 AGFKDG-AALAAQLSEPAGI-IEAQNGNLFIADTNNNIIRYLDLNK 922
+G+ DG A+ + P GI + + FI D N IR + +
Sbjct: 385 SGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYEE 430
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 3e-26
Identities = 33/154 (21%), Positives = 50/154 (32%), Gaps = 16/154 (10%)
Query: 602 FPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQI------GSSGEEGLRDGSFDDAT 655
+ + N +I N + I+ +D D G G + DG A
Sbjct: 271 WEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKAR 330
Query: 656 FNRPQGLAYNAKKNL--------LYVADTENHALREIDFVNDTVRTLAGNGTKG-SDYQG 706
+ P+ + Y D ENH +R + V T AG G+ G S Y
Sbjct: 331 MHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRVTTFAGRGSNGTSGYND 389
Query: 707 GEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQI 740
G+ N P + Y E +I +I
Sbjct: 390 GDLRQEARFNHPEGIVYDEERECFFIGDRENRRI 423
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430 | Back alignment and structure |
|---|
Score = 86.3 bits (213), Expect = 8e-18
Identities = 33/163 (20%), Positives = 59/163 (36%), Gaps = 11/163 (6%)
Query: 532 GVNSWPTFAVVGPNGKLLAQLAGEGHR---KDLDDLVE---AALLFYGKKKLLDNTPLPL 585
+ W P+G + H D D + + G++ D
Sbjct: 267 QDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVG 326
Query: 586 SLEKDNDPRLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNF--IVQIGSSGE 643
+ + PR T +K P + + D ++ I + G GS+G
Sbjct: 327 KKARMHAPRQGT-FVKNPAYKGSSDEYD-FYFCDRENHCIRILTPQGRVTTFAGRGSNGT 384
Query: 644 EGLRDGSF-DDATFNRPQGLAYNAKKNLLYVADTENHALREID 685
G DG +A FN P+G+ Y+ ++ ++ D EN +R+I
Sbjct: 385 SGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIG 427
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430 | Back alignment and structure |
|---|
Score = 84.0 bits (207), Expect = 5e-17
Identities = 34/315 (10%), Positives = 80/315 (25%), Gaps = 52/315 (16%)
Query: 610 ILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKN 669
+L F SD + ++ + D + G+ G+ ++ L+ +
Sbjct: 35 LLYGENFGSDISKIKVTIGGQDSKVV---GAKGKSLY--CVVPAKAYDGDIKLSILNDEG 89
Query: 670 LLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKG---TSQLLNSPWDVCYKPI 726
N V T G G+ + G + + P
Sbjct: 90 EEIANTEANEKFVYQK--KMLVTTFLGTMYDGNTKYDLKDGPFDDCGGFGGAVWLSFDPK 147
Query: 727 NEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFME 786
N + QH R + S++ + ++ I + +
Sbjct: 148 NHNHLYLVGEQHPT----------RLIDFEK-----EYVSTVYSGLSKVRTICWTHEADS 192
Query: 787 IYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAK 846
+ + + ++++ R N +
Sbjct: 193 MIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCNG----------------AETHPI 236
Query: 847 NGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLF 906
NG++Y ++ + D + + L I +G++ +
Sbjct: 237 NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQ-----------FHPSGNYAY 285
Query: 907 IADTNNNIIRYLDLN 921
I N + I D +
Sbjct: 286 IVVVNQHYILRSDYD 300
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430 | Back alignment and structure |
|---|
Score = 53.6 bits (128), Expect = 2e-07
Identities = 22/188 (11%), Positives = 42/188 (22%), Gaps = 33/188 (17%)
Query: 738 HQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSI 797
+ +T G + +G F +S P E
Sbjct: 104 QKKMLVTTFLGTMYDGNTKYD--LKDGPFDDCGGFGGAVWLSFDPKNHNHLYLVGEQHPT 161
Query: 798 RALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADSY 856
R ++ + + G L + + + +
Sbjct: 162 RLIDFEKEYVSTVYSG----------------------LSKVRTICWTHEADSMIITNDQ 199
Query: 857 NHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIR 916
N+ + + R S FK L + NG L+ N +
Sbjct: 200 NNNDRPNNYILTRESG--------FKVITELTKGQNCNGAETHPINGELYFNSWNAGQVF 251
Query: 917 YLDLNKEE 924
D +E
Sbjct: 252 RYDFTTQE 259
|
| >4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium binding site, enzyme function initiativ; 1.60A {Deinococcus radiodurans} PDB: 4eel_A* 4een_A Length = 259 | Back alignment and structure |
|---|
Score = 174 bits (442), Expect = 5e-49
Identities = 48/215 (22%), Positives = 81/215 (37%), Gaps = 16/215 (7%)
Query: 77 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFL-PFMGTGEANFLGGVASV 135
AVLFD+DGVL SE + V AE G+ + + + F G L +A
Sbjct: 26 APFDAVLFDLDGVLVESEGIIAQVWQSVLAERGLHLDLTEIAMYFTGQRFDGVLAYLAQQ 85
Query: 136 KGVK-GFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIK 194
D + F + GA E + ++ G+ A+ S+++R +
Sbjct: 86 HDFVPPPDFLDVLETRFNAAMTG-VTA-----IEGAAETLRALRAAGVPFAIGSNSERGR 139
Query: 195 VDANLAAAGLPVSMFDAIV--SADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGV 252
+ L AGL + + + KP PD++ A++ L + C+VIED++ G
Sbjct: 140 LHLKLRVAGLT-ELAGEHIYDPSWVGGRGKPHPDLYTFAAQQLGILPERCVVIEDSVTGG 198
Query: 253 QAAKAAQMRCIAVTTT-----LSEERLKEASPSLI 282
A AA + L + +
Sbjct: 199 AAGLAAGATLWGLLVPGHPHPDGAAALSRLGAARV 233
|
| >2fdr_A Conserved hypothetical protein; SAD, structural genomics, agrobacter tumefaciens, HAD-superfamily hydrolase; 2.00A {Agrobacterium tumefaciens str} SCOP: c.108.1.6 Length = 229 | Back alignment and structure |
|---|
Score = 171 bits (435), Expect = 2e-48
Identities = 54/215 (25%), Positives = 88/215 (40%), Gaps = 19/215 (8%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLP-FMGTGEANFLGGVASVK 136
++FD DGVL +SE + + + E G ++VE+ F G N L V S
Sbjct: 3 GFDLIIFDCDGVLVDSEIIAAQVESRLLTEAGYPISVEEMGERFAGMTWKNILLQVESEA 62
Query: 137 GVKGFDSEAAKKR-FFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKV 195
+ S K ++ L++ K G +++ + S++ ++
Sbjct: 63 SIPLSASLLDKSEKLLDMRLERDVKI-----IDGVKFALSRLT---TPRCICSNSSSHRL 114
Query: 196 DANLAAAGLPVSMFDA-IVSAD--AFENLKPAPDIFLSASKILNVPTSECIVIEDALAGV 252
D L GL F I SA + +KP PDIFL + V +V+ED++ G+
Sbjct: 115 DMMLTKVGL-KPYFAPHIYSAKDLGADRVKPKPDIFLHGAAQFGVSPDRVVVVEDSVHGI 173
Query: 253 QAAKAAQMRCIAVTTTLS-----EERLKEASPSLI 282
A+AA MR I T +RL +A +
Sbjct: 174 HGARAAGMRVIGFTGASHTYPSHADRLTDAGAETV 208
|
| >3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain- containing protein 1A; HDHD1A, haloacid dehalogenase-like hydrolase domain containing 1A; 2.00A {Homo sapiens} Length = 250 | Back alignment and structure |
|---|
Score = 167 bits (425), Expect = 6e-47
Identities = 54/205 (26%), Positives = 91/205 (44%), Gaps = 9/205 (4%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKG 137
V+ ++FDMDG+L ++E ++ + + + MG + V
Sbjct: 29 PVTHLIFDMDGLLLDTERLYSVVFQEICNRYDKKYSWDVKSLVMGKKALEAAQIIIDVLQ 88
Query: 138 VKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDA 197
+ E + + + P + + PGA +LI + G+ A+A+S+ D
Sbjct: 89 LP-MSKEELVEESQTKLKEVF--PTAAL-MPGAEKLIIHLRKHGIPFALATSSRSASFDM 144
Query: 198 NLAAAGLPVSMFDAIVSADAFE--NLKPAPDIFLSASKILNVP--TSECIVIEDALAGVQ 253
+ S+F IV D E + KP PDIFL+ +K + P +C+V EDA GV+
Sbjct: 145 KTSRHKEFFSLFSHIVLGDDPEVQHGKPDPDIFLACAKRFSPPPAMEKCLVFEDAPNGVE 204
Query: 254 AAKAAQMRCIAV-TTTLSEERLKEA 277
AA AA M+ + V LS + +A
Sbjct: 205 AALAAGMQVVMVPDGNLSRDLTTKA 229
|
| >3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde hydrolase like P structural genomics, PSI-2, protein structure initiative; 2.30A {Oleispira antarctica} Length = 277 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 3e-46
Identities = 44/213 (20%), Positives = 86/213 (40%), Gaps = 12/213 (5%)
Query: 77 GKVSAVLFDMDGVLCNSEEPSRRAA-VDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASV 135
G V A++ D G + + A +++F + G+EVT + MGT ++ + +
Sbjct: 12 GPVEALILDWAGTTIDFGSLAPVYAFMELFKQEGIEVTQAEAREPMGTEKSEHIRRMLGN 71
Query: 136 KGVKGF--------DSEAAKKRFFEIYLDKYAK--PNSGIGFPGALELINQCKSKGLKVA 185
+ +E KR ++++ + PG E+ ++ ++G+KV
Sbjct: 72 SRIANAWLSIKGQASNEEDIKRLYDLFAPIQTRIVAQRSQLIPGWKEVFDKLIAQGIKVG 131
Query: 186 VASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNV-PTSECIV 244
+ + L AA + V A +P PD+ L + L V + CI
Sbjct: 132 GNTGYGPGMMAPALIAAKEQGYTPASTVFATDVVRGRPFPDMALKVALELEVGHVNGCIK 191
Query: 245 IEDALAGVQAAKAAQMRCIAVTTTLSEERLKEA 277
++D L G++ A M + V+ + +E L
Sbjct: 192 VDDTLPGIEEGLRAGMWTVGVSCSGNEVGLDRE 224
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} Length = 158 | Back alignment and structure |
|---|
Score = 161 bits (408), Expect = 8e-46
Identities = 32/146 (21%), Positives = 58/146 (39%), Gaps = 8/146 (5%)
Query: 431 PEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINC-MHVLPDLEFLEKKYKDMPFTV 489
PE + W N+A DL+GKV+V++ + C C MH +P + + + + V
Sbjct: 7 PELQIQ-QWFNSATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAV 65
Query: 490 VGVHSAKFDNEK-DLEAIRNAVLRYGISHPVVNDGD-----MNLWRELGVNSWPTFAVVG 543
+G+H+ +E +++ + Y I PV D + P+ ++
Sbjct: 66 LGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLID 125
Query: 544 PNGKLLAQLAGEGHRKDLDDLVEAAL 569
G L A G+ L + L
Sbjct: 126 KAGDLRAHHFGDVSELLLGAEIATLL 151
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Length = 496 | Back alignment and structure |
|---|
Score = 170 bits (432), Expect = 2e-45
Identities = 62/362 (17%), Positives = 112/362 (30%), Gaps = 51/362 (14%)
Query: 596 FTSPLKFPGKLAID-ILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDA 654
G+LA D + + L+I H I + DL + +
Sbjct: 134 KCCGFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIP--------- 184
Query: 655 TFNRPQGLAYNAKKNLLYVADTENHALREIDFVND-------TVRTLAGNGTKGSDYQGG 707
NR + +A+N K AD + + ID+ + +GT
Sbjct: 185 -TNRIRSIAFNKKIE--GYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDR---S 238
Query: 708 EKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSS 767
+ PIN ++Y + Q++ VD +G ++ + + +
Sbjct: 239 DIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298
Query: 768 LNTSFAQ------PSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNL 821
I + P Y + + F
Sbjct: 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEF--ITPYNFVGGY 356
Query: 822 FKFGDRDGMGSEVLLQHPLGVYCAKN--------GQIYVADSYNHKIKKLDPASNRVSTL 873
+ G RD +G+E + +P KN Y D N ++K+ P VST
Sbjct: 357 KQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGIVSTY 415
Query: 874 AGIGKA---------GFKDGA-ALAAQLSEPAGI-IEAQNGNLFIADTNNNIIRYLDLNK 922
AG G + G DG A+ + +G+ + ++ D + IR + + +
Sbjct: 416 AGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQ 475
Query: 923 EE 924
EE
Sbjct: 476 EE 477
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Length = 496 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 5e-32
Identities = 47/311 (15%), Positives = 101/311 (32%), Gaps = 32/311 (10%)
Query: 633 NFIVQIGSSGEEGLRDGSFDD------ATFNRPQGLAYNAKKN-LLYVADTENHALREID 685
+ ++G RDG FD F+ LA++ LY+ + A++ ID
Sbjct: 109 TLCGYRNNRDDQGWRDGPFDGPEGVKCCGFSDNGRLAFDPLNKDHLYICYDGHKAIQLID 168
Query: 686 FVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHST 745
N + + T ++ ++ + E + +A+ + E +
Sbjct: 169 LKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADE------AEYMIVAIDYDGKGDESPS 222
Query: 746 VDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTG 805
V + R G + L ++ Q +G ++ P E+Y E + L+L
Sbjct: 223 VYIIKRNADG---TFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDY 279
Query: 806 GSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQI-YVADSYNHKIKKLD 864
+ GG + + ++ G+ Y NH + D
Sbjct: 280 FKTIKNGGSWDPIVKNN-PNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSD 338
Query: 865 P------ASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQN--------GNLFIADT 910
+ + G ++G++D A+++ P + +N + + D
Sbjct: 339 YDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDR 398
Query: 911 NNNIIRYLDLN 921
N +R +
Sbjct: 399 LNFCVRKVTPE 409
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Length = 496 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 2e-25
Identities = 32/188 (17%), Positives = 54/188 (28%), Gaps = 21/188 (11%)
Query: 600 LKFPGKLAIDILNNRLFISDSNHNRIVVTDLDG------NFIVQIGSSGEEGLRDGSFDD 653
+ ++ I + N++ + +D D +G + G RD +
Sbjct: 309 PSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTE 368
Query: 654 ATFNRPQGLAYNAKKNL-------LYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQG 706
A N P + + Y D N +R++ V T AG G S G
Sbjct: 369 ARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVSTYAGRGASTSLADG 427
Query: 707 -------GEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYE 759
G+ + Y + E Y+ H I S A + E
Sbjct: 428 NQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVAGDENIPE 487
Query: 760 RNLNGSSS 767
S+
Sbjct: 488 DESTVESN 495
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Length = 496 | Back alignment and structure |
|---|
Score = 66.1 bits (160), Expect = 4e-11
Identities = 40/335 (11%), Positives = 85/335 (25%), Gaps = 42/335 (12%)
Query: 616 FISDSNHNRI-------VVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKK 668
F +D + ++ +V ++ ++ SG G + + A
Sbjct: 41 FGTDVSKVKVKIGGKDAIVINVKSTYVYCFVPSGAF---SGEIEITVGEGENAVTTTAST 97
Query: 669 NLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINE 728
+ + G + + G E + + + P+N+
Sbjct: 98 T------FSYEKKMVVGTLCGYRNNRDDQGWRDGPFDGPEGVKCCGFSDNGRLAFDPLNK 151
Query: 729 -KVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEI 787
+YI G I + + + ++ + + + + +
Sbjct: 152 DHLYICYDGHKAIQLIDLKNRMLSSPLNINT----IPTNRIRSIAFNKKIEGYADEAEYM 207
Query: 788 YVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVY-CAK 846
VA R G F DR + + G
Sbjct: 208 IVAIDYDGKGDESPSVYIIKRNADGT----------FDDRSDIQLIAAYKQCNGATIHPI 257
Query: 847 NGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGA--------ALAAQLSEPAGII 898
NG++Y ++ +LD + T+ G A S I
Sbjct: 258 NGELYFNSYEKGQVFRLDL-VDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIF 316
Query: 899 EAQNGN-LFIADTNNNIIRYLDLNKEEPELQTLEL 932
G + NN+ D ++ + E T
Sbjct: 317 IHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYN 351
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} Length = 160 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 7e-44
Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 10/147 (6%)
Query: 431 PEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCM-HVLPDLEFLEKKYKDMPFTV 489
E + +W+N L DL+GKVVV++ + C C+ H +P + + + + V
Sbjct: 10 LELDVQ-EWVNHEGLSNE-DLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQV 67
Query: 490 VGVHSAKFDN-EKDLEAIRNAVLRYGISHPVVNDGD------MNLWRELGVNSWPTFAVV 542
+G+HS + EA++ + +GI PV D + ++ + P+ +
Sbjct: 68 IGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILA 127
Query: 543 GPNGKLLAQLAGEGHRKDLDDLVEAAL 569
G++ G+ L L+ + L
Sbjct: 128 DRKGRIRQVQFGQVDDFVLGLLLGSLL 154
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270 | Back alignment and structure |
|---|
Score = 147 bits (372), Expect = 2e-39
Identities = 50/321 (15%), Positives = 105/321 (32%), Gaps = 83/321 (25%)
Query: 600 LKFPGKLAIDILNNRLFISDS-NHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNR 658
P +A+D ++++ + R+V + +G +
Sbjct: 23 RLSPSGVAVD-SAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNG-------------LYQ 68
Query: 659 PQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSP 718
PQGLA + + YV D N + ++ L +G LN P
Sbjct: 69 PQGLAVDGAGTV-YVTDFNNRVVTLAAG-SNNQTVLPFDG----------------LNYP 110
Query: 719 WDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGI 778
+ VY+A G +++ + + + + LN P G+
Sbjct: 111 EGLAVDT-QGAVYVADRGNNRV----------VKLAAGSKTQTVLPFTGLN----DPDGV 155
Query: 779 SLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQH 838
++ +YV D++++ + L ++ +L D +
Sbjct: 156 AVDNSG-NVYVTDTDNNRVVKLEAESNNQVVLPFTD---------------------ITA 193
Query: 839 PLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGII 898
P G+ + G +YV + +++ KL S ST+ L+ P +
Sbjct: 194 PWGIAVDEAGTVYVTEHNTNQVVKLLAGST-TSTVLPFT------------GLNTPLAVA 240
Query: 899 EAQNGNLFIADTNNNIIRYLD 919
+ +++AD N+ + L
Sbjct: 241 VDSDRTVYVADRGNDRVVKLT 261
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 9e-29
Identities = 47/295 (15%), Positives = 83/295 (28%), Gaps = 79/295 (26%)
Query: 627 VTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDF 686
T G ++ P G+A ++ N+ YV +
Sbjct: 6 PTQASGQTVLPFTGIDF------------RLSPSGVAVDSAGNV-YVTSEGMY------- 45
Query: 687 VNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTV 746
V LA T + L P + VY+ + +
Sbjct: 46 --GRVVKLATGSTGTTVLPFNG------LYQPQGLAVDGAGT-VYVTDFNNRVVTLAAG- 95
Query: 747 DGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGG 806
DG P G+++ +YVAD ++ + L +
Sbjct: 96 SNNQTVLPFDG--------------LNYPEGLAVDTQ-GAVYVADRGNNRVVKLAAGSKT 140
Query: 807 SRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPA 866
+L L P GV +G +YV D+ N+++ KL+
Sbjct: 141 QTVLPFTG---------------------LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE 179
Query: 867 SNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLN 921
SN L ++ P GI + G +++ + N N + L
Sbjct: 180 SNNQVVLPF-------------TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG 221
|
| >1swv_A Phosphonoacetaldehyde hydrolase; HAD enzyme superfamily, phosphonotase, metal binding; 2.30A {Bacillus cereus} SCOP: c.108.1.3 PDB: 1sww_A 2iof_A* 2ioh_A 1rql_A 1rqn_A 2iof_K* 1rdf_A 1fez_A Length = 267 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 8e-38
Identities = 41/213 (19%), Positives = 81/213 (38%), Gaps = 12/213 (5%)
Query: 78 KVSAVLFDMDGVLCNSEEP-SRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVK 136
K+ AV+F G + +++F + GV +T E+ MG + + + + +
Sbjct: 5 KIEAVIFAWAGTTVDYGCFAPLEVFMEIFHKRGVAITAEEARKPMGLLKIDHVRALTEMP 64
Query: 137 GVKG--------FDSEAAKKRFFEIYLDKYAKPNSGIG--FPGALELINQCKSKGLKVAV 186
+ +EA + +E + + G E+I + +G+K+
Sbjct: 65 RIASEWNRVFRQLPTEADIQEMYEEFEEILFAILPRYASPINGVKEVIASLRERGIKIGS 124
Query: 187 ASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNV-PTSECIVI 245
+ R +D A L D +V+ D +P P + + L V P + I +
Sbjct: 125 TTGYTREMMDIVAKEAALQGYKPDFLVTPDDVPAGRPYPWMCYKNAMELGVYPMNHMIKV 184
Query: 246 EDALAGVQAAKAAQMRCIAVTTTLSEERLKEAS 278
D ++ ++ + A M + V SE L E
Sbjct: 185 GDTVSDMKEGRNAGMWTVGVILGSSELGLTEEE 217
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329 | Back alignment and structure |
|---|
Score = 141 bits (356), Expect = 8e-37
Identities = 61/344 (17%), Positives = 111/344 (32%), Gaps = 50/344 (14%)
Query: 593 PRLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSG---------- 642
P ++ P + G +A+D N L I + D F+ Q G
Sbjct: 17 PGVYLLPGQVSG-VALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVI 74
Query: 643 --EEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTK 700
S F P GL+ + N +V D H + ++D + L G
Sbjct: 75 DPNNAEILQSSGKNLFYLPHGLSIDTDGNY-WVTDVALHQVFKLDP-HSKEGPLLILGRS 132
Query: 701 GSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIA-MAGQHQIWEHSTVDGVTRAFSGDGYE 759
P DV +P V+++ +I + S + +
Sbjct: 133 MQPGSDQNH-----FCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEES-- 185
Query: 760 RNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPD 819
+GSS F+ P ++L P ++ VAD E+ I+ + F
Sbjct: 186 ---SGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFK-TDTKEFVREIKHASFGR 241
Query: 820 NLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKA 879
N+F G A NG+ Y D + ++ +S + + +
Sbjct: 242 NVFAISYIPG------------FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRK 289
Query: 880 GFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKE 923
F P I+ +++G ++I D + N + L ++
Sbjct: 290 HFDM----------PHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329 | Back alignment and structure |
|---|
Score = 87.6 bits (217), Expect = 1e-18
Identities = 31/173 (17%), Positives = 56/173 (32%), Gaps = 15/173 (8%)
Query: 757 GYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPI 816
E L+ Q SG++L + + + + G PI
Sbjct: 9 HVEEELDWPGV-YLLPGQVSGVALDSKN-NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPI 66
Query: 817 FPDNLFKFGDRDGM----GSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASN--RV 870
D + + + L P G+ +G +V D H++ KLDP S +
Sbjct: 67 EEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPL 126
Query: 871 STLAGIGKAGFKDGAALAAQLSEPAGI-IEAQNGNLFIADT-NNNIIRYLDLN 921
L + G +P + +E G +F++D N+ I +
Sbjct: 127 LILGRSMQPGSDQN-----HFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS 174
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 4e-11
Identities = 23/160 (14%), Positives = 45/160 (28%), Gaps = 25/160 (15%)
Query: 825 GDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIG------- 877
+ D G +L GV + + +H S V G+G
Sbjct: 12 EELDWPGVYLLPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTI 71
Query: 878 -KAGFKDGAALAA----QLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKEEPELQTLEL 932
+ L + P G+ +GN ++ D + + LD + +E L L
Sbjct: 72 LVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGR 131
Query: 933 KGVQPPTPKSRSPKRLRRRSSPDAQTIVVDGGLSNEGNIY 972
+ + V+ + G ++
Sbjct: 132 SMQ-----PGSDQNHFCQ-----PTDVAVEP---STGAVF 158
|
| >2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST genomics, PSI-2, protein structure initiative; 1.80A {Chlorobaculum tepidum} SCOP: c.108.1.6 Length = 234 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 2e-31
Identities = 44/210 (20%), Positives = 76/210 (36%), Gaps = 9/210 (4%)
Query: 81 AVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKG 140
VLFD+DG L E +RR D E+ F G + + V S G++
Sbjct: 6 LVLFDIDGTLLKVESMNRRVLADALIEVYGTEGSTGSHDFSGKMDGAIIYEVLSNVGLER 65
Query: 141 FDSEAAKKRFFEIYLDKYAKPNSGIG---FPGALELINQCKSKG-LKVAVASSADRIKVD 196
+ + E Y+ + + G EL++ S+ + + + +
Sbjct: 66 AEIADKFDKAKETYIALFRERARREDITLLEGVRELLDALSSRSDVLLGLLTGNFEASGR 125
Query: 197 ANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKIL---NVPTSECIVIEDALAGVQ 253
L G+ F AD + P I L ++ + N S+ ++I D ++
Sbjct: 126 HKLKLPGID-HYFPFGAFADDALDRNELPHIALERARRMTGANYSPSQIVIIGDTEHDIR 184
Query: 254 AAKAAQMRCIAVTT-TLSEERLKEASPSLI 282
A+ R IAV T + E L P +
Sbjct: 185 CARELDARSIAVATGNFTMEELARHKPGTL 214
|
| >2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, haloacid dehalogenase-like F PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae} SCOP: c.108.1.3 Length = 190 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 3e-31
Identities = 36/190 (18%), Positives = 71/190 (37%), Gaps = 16/190 (8%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKG 137
K ++D+ G L ++ E S A V+ A G+ + +
Sbjct: 5 KYHDYIWDLGGTLLDNYETSTAAFVETLALYGITQDHDSVYQALKVSTP---------FA 55
Query: 138 VKGFDSEAAKKRFFEIYLDKYAKPNSGIG-FPGALELINQCKSKGLKVAVASSADRIKVD 196
++ F F E Y + A+ F G +L+ ++G + + S + +V
Sbjct: 56 IETFAPNLE--NFLEKYKENEARELEHPILFEGVSDLLEDISNQGGRHFLVSHRND-QVL 112
Query: 197 ANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAK 256
L + + F +V++ + KP P+ L + + S +VI D ++A +
Sbjct: 113 EILEKTSIA-AYFTEVVTSSSGFKRKPNPESMLYLREKYQI--SSGLVIGDRPIDIEAGQ 169
Query: 257 AAQMRCIAVT 266
AA + T
Sbjct: 170 AAGLDTHLFT 179
|
| >3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis} Length = 231 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 4e-31
Identities = 42/205 (20%), Positives = 88/205 (42%), Gaps = 14/205 (6%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVD-VFAEMGV-EVTVEDFLPFMGTGEANFLGGVASV 135
+ +AV+FD L ++ R V +MG + ++ N +
Sbjct: 24 QPTAVIFDWYNTLIDTSINIDRTTFYQVLDQMGYKNIDLDSIP--------NSTIPKYLI 75
Query: 136 KGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKV 195
+ EA +E L+K K ++ + GA+EL++ K + +A+ S+ + ++
Sbjct: 76 TLLGKRWKEATIL--YENSLEKSQKSDNFMLNDGAIELLDTLKENNITMAIVSNKNGERL 133
Query: 196 DANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNV-PTSECIVIEDALAGVQA 254
+ + L FD+I+ + +KP+P+ L+A +N+ P+ E I D+++ +Q+
Sbjct: 134 RSEIHHKNL-THYFDSIIGSGDTGTIKPSPEPVLAALTNINIEPSKEVFFIGDSISDIQS 192
Query: 255 AKAAQMRCIAVTTTLSEERLKEASP 279
A A I +T + +
Sbjct: 193 AIEAGCLPIKYGSTNIIKDILSFKN 217
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 7e-31
Identities = 49/320 (15%), Positives = 107/320 (33%), Gaps = 74/320 (23%)
Query: 600 LKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRP 659
P +A++ N + ++D+N++RI + D +G F Q G G+ D+ P
Sbjct: 29 FTEPSGVAVNA-QNDIIVADTNNHRIQIFDKEGRFKFQFGECGK--------RDSQLLYP 79
Query: 660 QGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPW 719
+A + V + ++ G + L P
Sbjct: 80 NRVAVVRNSGDIIVTERSP---------THQIQIYNQYGQFVRKFGATI------LQHPR 124
Query: 720 DVCYKPINEKVYIAMAGQHQIWEHSTVDG-VTRAFSGDGYERNLNGSSSLNTSFAQPSGI 778
V ++ + ++ +G V F + P+G+
Sbjct: 125 GVTVDNKG-RIIVVECKVMRVIIFDQ-NGNVLHKFGCSKH-------------LEFPNGV 169
Query: 779 SLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQH 838
++ EI+++D+ + ++ N + G L + G E + +
Sbjct: 170 VVNDKQ-EIFISDNRAHCVKVFNYE---------GQY-----LRQI------GGEGITNY 208
Query: 839 PLGVYCAKNGQIYVADSYNHK-IKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGI 897
P+GV NG+I +AD++N+ + +S L K ++ +
Sbjct: 209 PIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVK------------HAQCFDV 256
Query: 898 IEAQNGNLFIADTNNNIIRY 917
+G++ +A + + Y
Sbjct: 257 ALMDDGSVVLASKDYRLYIY 276
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 2e-28
Identities = 55/296 (18%), Positives = 98/296 (33%), Gaps = 72/296 (24%)
Query: 621 NHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHA 680
H + + + + G G + F P G+A NA+ ++ VADT NH
Sbjct: 2 THMKSQIKRQRMIYHCKFGEFGVM--------EGQFTEPSGVAVNAQNDI-IVADTNNHR 52
Query: 681 LREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVC-YKPINEKVYIAMAGQHQ 739
++ D G G SQL P V + + + + HQ
Sbjct: 53 IQIFDKEGRFKFQF---GECGK-------RDSQL-LYPNRVAVVRNSGDIIVTERSPTHQ 101
Query: 740 IWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRA 799
I + ++ G G++ L P G+++ I V + + +
Sbjct: 102 I----------QIYNQYGQFVRKFGATILQ----HPRGVTVDNK-GRIIVVECKVMRVII 146
Query: 800 LNLKTGGSRLLAGGDPIFPD--NLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYN 857
+ + L KFG + + P GV +I+++D+
Sbjct: 147 FD----------------QNGNVLHKFGCSKHL------EFPNGVVVNDKQEIFISDNRA 184
Query: 858 HKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNN 913
H +K + + + G G + P G+ NG + IAD +NN
Sbjct: 185 HCVKVFNYEGQYLRQIGGEG------------ITNYPIGVGINSNGEILIADNHNN 228
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 1e-15
Identities = 39/218 (17%), Positives = 73/218 (33%), Gaps = 47/218 (21%)
Query: 707 GEKGTSQ-LLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDG-YERNLNG 764
GE G + P V N+ + +A H+I + F +G ++
Sbjct: 20 GEFGVMEGQFTEPSGVAVNAQND-IIVADTNNHRI----------QIFDKEGRFKFQFGE 68
Query: 765 SSSLNTSFAQPSGISLSPDFMEIYVA-DSESSSIRALNLKTGGSRLLAGGDPIFPDNLFK 823
++ P+ +++ + +I V S + I+ N G + K
Sbjct: 69 CGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN---------QYGQFVR-----K 114
Query: 824 FGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKD 883
FG LQHP GV G+I V + ++ D N + G +
Sbjct: 115 FGATI-------LQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHK---FGCSK--- 161
Query: 884 GAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLN 921
L P G++ +FI+D + ++ +
Sbjct: 162 ------HLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE 193
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 4e-05
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Query: 857 NHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIR 916
+ K + G+ G +G Q +EP+G+ ++ +ADTNN+ I+
Sbjct: 3 HMKSQIKRQRMIYHCK---FGEFGVMEG-----QFTEPSGVAVNAQNDIIVADTNNHRIQ 54
Query: 917 YLDLN 921
D
Sbjct: 55 IFDKE 59
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Length = 153 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 1e-30
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 7/139 (5%)
Query: 431 PEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVV 490
P F L L+ + DL+GKV +++FW C C+ +P + YK+ F V+
Sbjct: 9 PAF--SLPDLHGKTVSNA-DLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVL 65
Query: 491 GVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLA 550
V +E++R V YG+ V+ D D + + G +PT ++G G++L
Sbjct: 66 AVAQ----PIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQVYPTSVLIGKKGEILK 121
Query: 551 QLAGEGHRKDLDDLVEAAL 569
GE L ++ A
Sbjct: 122 TYVGEPDFGKLYQEIDTAW 140
|
| >3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343} Length = 225 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 3e-29
Identities = 41/209 (19%), Positives = 72/209 (34%), Gaps = 11/209 (5%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGV-EVTVEDFLPFMGTGEANFLGGVASVK 136
K + LFD D L +S V G +T + +G S
Sbjct: 5 KYTVYLFDFDYTLADSSRGIVTCFRSVLERHGYTGITDDMIKRTIG------KTLEESFS 58
Query: 137 GVKGFDSEAAKKRFFEIYLDKYAKPNSGIG--FPGALELINQCKSKGLKVAVASSADRIK 194
+ G + F + Y + + FP L + K +G+++ + S+ R +
Sbjct: 59 ILTGITDADQLESFRQEYSKEADIYMNANTILFPDTLPTLTHLKKQGIRIGIISTKYRFR 118
Query: 195 VDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQA 254
+ + L FD I+ + + KP P+ L A L E + I D+
Sbjct: 119 ILSFLRNHMPD-DWFDIIIGGEDVTHHKPDPEGLLLAIDRLKACPEEVLYIGDSTVDAGT 177
Query: 255 AKAAQMRCIAVTT-TLSEERLKEASPSLI 282
A AA + VT+ + + + I
Sbjct: 178 AAAAGVSFTGVTSGMTTAQEFQAYPYDRI 206
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Length = 164 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 2e-27
Identities = 30/148 (20%), Positives = 55/148 (37%), Gaps = 2/148 (1%)
Query: 430 VPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTV 489
VP + + + P K K ++ FW C C+ L E + K +
Sbjct: 16 VPHTMSTMKTADNRPASVY-LKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANL 74
Query: 490 VGVHSAKFDNEKDLEAIRNAVLRYGISH-PVVNDGDMNLWRELGVNSWPTFAVVGPNGKL 548
+ V S F +EK + PVV D + + L ++ +P++A++G +G +
Sbjct: 75 ITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQNLNISVYPSWALIGKDGDV 134
Query: 549 LAQLAGEGHRKDLDDLVEAALLFYGKKK 576
+ G + L+ G K
Sbjct: 135 QRIVKGSINEAQALALIRNPNADLGSLK 162
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 3e-26
Identities = 35/323 (10%), Positives = 90/323 (27%), Gaps = 81/323 (25%)
Query: 597 TSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATF 656
T+ P + + +++I+ N I +LDG
Sbjct: 11 TNQDTGPYGITVS-DKGKVWITQHKANMISCINLDGKITEYPL-------------PTPD 56
Query: 657 NRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLN 716
+ L ++ ++ + + + I ++ +
Sbjct: 57 AKVMCLTISSDGE-VWFTENAANKIGRIT-KKGIIKEYTLPNP---------------DS 99
Query: 717 SPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPS 776
+P+ + P N ++ ++I + DG R + + PS
Sbjct: 100 APYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPN-------------KGSYPS 144
Query: 777 GISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLL 836
I+L D ++ ++++++I + +G P
Sbjct: 145 FITLGSDN-ALWFTENQNNAIGRITE-SGDITEFKIPTP--------------------A 182
Query: 837 QHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAG 896
P+G+ + ++ + +KI ++ + + + P
Sbjct: 183 SGPVGITKGNDDALWFVEIIGNKIGRITTSGEITEF-------------KIPTPNARPHA 229
Query: 897 IIEAQNGNLFIADTNNNIIRYLD 919
I +L+ + N I L
Sbjct: 230 ITAGAGIDLWFTEWGANKIGRLT 252
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 3e-25
Identities = 37/331 (11%), Positives = 85/331 (25%), Gaps = 83/331 (25%)
Query: 596 FTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDAT 655
+P L I + ++ +++ N+I G +
Sbjct: 52 LPTPDAKVMCLTIS-SDGEVWFTENAANKIGRITKKGIIKEYTLPNP------------- 97
Query: 656 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLL 715
+ P G+ ++ + + + + I + +R
Sbjct: 98 DSAPYGITEGPNGDI-WFTEMNGNRIGRIT-DDGKIREYELPNK---------------G 140
Query: 716 NSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQP 775
+ P + + ++ + I T G F T + P
Sbjct: 141 SYPSFITLGS-DNALWFTENQNNAIGR-ITESGDITEFKIP-------------TPASGP 185
Query: 776 SGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVL 835
GI+ D ++ + + I + +G P
Sbjct: 186 VGITKGNDD-ALWFVEIIGNKIGRITT-SGEITEFKIPTP-------------------- 223
Query: 836 LQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPA 895
P + ++ + +KI +L + + + +EP
Sbjct: 224 NARPHAITAGAGIDLWFTEWGANKIGRLTSNNIIEEY-------------PIQIKSAEPH 270
Query: 896 GIIEAQNGNLFIADTNNNIIRYLDLNKEEPE 926
GI ++ A + I + L L K+ E
Sbjct: 271 GIC-FDGETIWFAMECDKIGK-LTLIKDNME 299
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 5e-15
Identities = 23/153 (15%), Positives = 52/153 (33%), Gaps = 35/153 (22%)
Query: 767 SLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGD 826
+L P GI++S ++++ +++ I +NL G P
Sbjct: 9 NLTNQDTGPYGITVSDK-GKVWITQHKANMISCINL-DGKITEYPLPTP----------- 55
Query: 827 RDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAA 886
+ + + +G+++ ++ +KI ++ +
Sbjct: 56 ---------DAKVMCLTISSDGEVWFTENAANKIGRITKKGI-IKEYTLPN--------- 96
Query: 887 LAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLD 919
S P GI E NG+++ + N N I +
Sbjct: 97 ---PDSAPYGITEGPNGDIWFTEMNGNRIGRIT 126
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 3e-26
Identities = 40/325 (12%), Positives = 90/325 (27%), Gaps = 83/325 (25%)
Query: 598 SPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFN 657
+P L + ++ +++ N+I G F +
Sbjct: 59 TPDAKVMCLIVS-SLGDIWFTENGANKIGKLSKKGGFTEYPLPQP-------------DS 104
Query: 658 RPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNS 717
P G+ ++ + + ++ + T+ +
Sbjct: 105 GPYGITEGLNGDI-WFTQLNGDRIGKLT-ADGTIYEYDLPNK---------------GSY 147
Query: 718 PWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSG 777
P + + ++ + I T G + T+ A P G
Sbjct: 148 PAFITLGS-DNALWFTENQNNSIG-RITNTGKLEEYPLP-------------TNAAAPVG 192
Query: 778 ISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQ 837
I+ D ++ + + I + TG P
Sbjct: 193 ITSGND-GALWFVEIMGNKIGRITT-TGEISEYDIPTP--------------------NA 230
Query: 838 HPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGI 897
P + KN +I+ + ++I ++ N + L + +EP GI
Sbjct: 231 RPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEY------------QLQTENAEPHGI 277
Query: 898 IEAQNGNLFIADTNNNIIRYLDLNK 922
++G+++ A I L+LN+
Sbjct: 278 TFGKDGSVWFALKCK--IGKLNLNE 300
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 5e-24
Identities = 31/326 (9%), Positives = 87/326 (26%), Gaps = 81/326 (24%)
Query: 596 FTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDAT 655
+ P P + + +++ + N+I D G +
Sbjct: 15 LSIPDSGPYGITSS-EDGKVWFTQHKANKISSLDQSGRIKEFEVPTP------------- 60
Query: 656 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLL 715
+ L ++ ++ + + + + ++
Sbjct: 61 DAKVMCLIVSSLGDI-WFTENGANKIGKLS-KKGGFTEYPLPQP---------------D 103
Query: 716 NSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQP 775
+ P+ + N ++ +I + + DG + + P
Sbjct: 104 SGPYGITEGL-NGDIWFTQLNGDRIGKLTA-DGTIYEYDLPN-------------KGSYP 148
Query: 776 SGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVL 835
+ I+L D ++ +++++SI + TG
Sbjct: 149 AFITLGSDNA-LWFTENQNNSIGRITN-TGKLEEYPLPTN-------------------- 186
Query: 836 LQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPA 895
P+G+ +G ++ + +KI ++ +S P
Sbjct: 187 AAAPVGITSGNDGALWFVEIMGNKIGRITTTGE-ISEYDIPTPNAR------------PH 233
Query: 896 GIIEAQNGNLFIADTNNNIIRYLDLN 921
I +N ++ + N I + +
Sbjct: 234 AITAGKNSEIWFTEWGANQIGRITND 259
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 5e-20
Identities = 38/335 (11%), Positives = 80/335 (23%), Gaps = 95/335 (28%)
Query: 642 GEEGLRDGSFD----DATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGN 697
G E + + + P G+ + + + + + + +D
Sbjct: 1 GSEAWMNFYLEEFNLSIPDSGPYGITSSEDGKV-WFTQHKANKISSLD--QSGRIKEFEV 57
Query: 698 GTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDG 757
T + + ++ G ++I + S G +
Sbjct: 58 PTPDA--------------KVMCLIVSS-LGDIWFTENGANKIGKLSK-KGGFTEYP--- 98
Query: 758 YERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIF 817
L + P GI+ + +I+ I L
Sbjct: 99 ----------LPQPDSGPYGITEGLN-GDIWFTQLNGDRIGKLTADGTIYEYDLPNK--- 144
Query: 818 PDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIG 877
+P + + ++ ++ N+ I ++ +
Sbjct: 145 ------------------GSYPAFITLGSDNALWFTENQNNSIGRITNTGK-LEEYP--- 182
Query: 878 KAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKEEPELQTLELKGVQP 937
L + P GI +G L+ + N I + E E
Sbjct: 183 ---------LPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDI-------- 225
Query: 938 PTPKSRSPKRLRRRSSPDAQTIVVDGGLSNEGNIY 972
PTP +R P A I I+
Sbjct: 226 PTPNAR----------PHA--ITAGK----NSEIW 244
|
| >2hdo_A Phosphoglycolate phosphatase; NP_784602.1, structur genomics, PSI-2, protein structure initiative, joint center structural genomics; HET: MSE; 1.50A {Lactobacillus plantarum} SCOP: c.108.1.6 Length = 209 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 4e-26
Identities = 39/192 (20%), Positives = 75/192 (39%), Gaps = 15/192 (7%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVE-VTVEDFLPFMGTGEANFLGGVASVK 136
A++FD+DG L NS+ +V A G + F E
Sbjct: 3 TYQALMFDIDGTLTNSQPAYTTVMREVLATYGKPFSPAQAQKTFPMAAEQAMTE-----L 57
Query: 137 GVKGFDSEAAKKRFFEIYLDKYAK--PNSGIGFPGALELINQCKSKGLKVAVASSADRIK 194
G+ + + + ++ ++ Y + +PG L Q S L++ + +S R +
Sbjct: 58 GIAASEFDHFQAQYEDVMASHYDQIEL-----YPGITSLFEQLPS-ELRLGIVTSQRRNE 111
Query: 195 VDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQA 254
+++ + + +SAD KP P L+A + +NV + I D+++ Q
Sbjct: 112 LESGMRSYPFM-MRMAVTISADDTPKRKPDPLPLLTALEKVNVAPQNALFIGDSVSDEQT 170
Query: 255 AKAAQMRCIAVT 266
A+AA +
Sbjct: 171 AQAANVDFGLAV 182
|
| >3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile} Length = 240 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 4e-26
Identities = 44/226 (19%), Positives = 85/226 (37%), Gaps = 22/226 (9%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKG 137
VLFD+DG L + +E ++ G++ +E+ F+G + K
Sbjct: 28 NYEIVLFDLDGTLTDPKEGITKSIQYSLNSFGIKEDLENLDQFIG------PPLHDTFKE 81
Query: 138 VKGFDSE---AAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIK 194
F+ + A +++ E + DK N + E++ G + VA+S +
Sbjct: 82 YYKFEDKKAKEAVEKYREYFADKGIFENKI--YENMKEILEMLYKNGKILLVATSKPTVF 139
Query: 195 VDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNV-PTSECIVIEDALAGVQ 253
+ L + F I ++ ++ + NV + I++ D +
Sbjct: 140 AETILRYFDID-RYFKYIAGSNLDGTRVNKNEVIQYVLDLCNVKDKDKVIMVGDRKYDII 198
Query: 254 AAKAAQMRCIAVT---TTLSEERLKEASPSLIRKEIGSVS-LNDIL 295
AK + I V S E + E+ P+ I + +V + DIL
Sbjct: 199 GAKKIGIDSIGVLYGYG--SFEEISESEPTYI---VENVESIKDIL 239
|
| >3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} Length = 226 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 4e-26
Identities = 57/238 (23%), Positives = 88/238 (36%), Gaps = 22/238 (9%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEV-TVEDFLPFMGTGEANFLGGVASVK 136
+ VLFD+DG L +S E ++ + ++V + F+G S
Sbjct: 3 LYNYVLFDLDGTLTDSAEGITKSVKYSLNKFDIQVEDLSSLNKFVG------PPLKTSFM 56
Query: 137 GVKGFDSE---AAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRI 193
FD E A + + + K N + G L++ K G + VA+S +
Sbjct: 57 EYYNFDEETATVAIDYYRDYFKAKGMFENKV--YDGIEALLSSLKDYGFHLVVATSKPTV 114
Query: 194 KVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQ 253
L L FDAIV + L D+ A + LN+ + + I+I D V
Sbjct: 115 FSKQILEHFKLA-FYFDAIVGSSLDGKLSTKEDVIRYAMESLNIKSDDAIMIGDREYDVI 173
Query: 254 AAKAAQMRCIAVT-TTLSEERLKEASPSLIRKEIGSVS-LNDILTGGGGSYNEKIQEH 309
A + I VT S E LK A + I + SV L+ + E H
Sbjct: 174 GALKNNLPSIGVTYGFGSYEELKNAGANYI---VNSVDELHKKIL----ELREGHHHH 224
|
| >2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.10A {Streptococcus pneumoniae} SCOP: c.108.1.6 Length = 207 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 5e-26
Identities = 34/189 (17%), Positives = 68/189 (35%), Gaps = 7/189 (3%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKG 137
+ +A ++D+DG L +S E + FA+ + E F+ L + V
Sbjct: 3 QKTAFIWDLDGTLLDSYEAILSGIEETFAQFSIPYDKEKVREFIFKYSVQDL--LVRVAE 60
Query: 138 VKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDA 197
+ D E + L + PGA E++ G++ + +
Sbjct: 61 DRNLDVEVLN-QVRAQSLAEKNAQVVL--MPGAREVLAWADESGIQQFIYTHKGNNAFTI 117
Query: 198 NLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKA 257
L G+ S F I+++ + KP+P+ + + I D V+ A+
Sbjct: 118 -LKDLGVE-SYFTEILTSQSGFVRKPSPEAATYLLDKYQLNSDNTYYIGDRTLDVEFAQN 175
Query: 258 AQMRCIAVT 266
+ ++ I
Sbjct: 176 SGIQSINFL 184
|
| >2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii} Length = 220 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 9e-26
Identities = 37/195 (18%), Positives = 66/195 (33%), Gaps = 16/195 (8%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKG 137
K AVL D L + V + G ++ + +A + G
Sbjct: 2 KYKAVLVDFGNTLVGFKPVFYEKVYQVLKDNGYDLDLRKVFRAY--AKAMGMINYPDEDG 59
Query: 138 VKGFDSE--------AAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASS 189
++ D + +R + + + + LE + KS G K+A+ S+
Sbjct: 60 LEHVDPKDFLYILGIYPSERLVKELKEADIRDGEAFLYDDTLEFLEGLKSNGYKLALVSN 119
Query: 190 ADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDAL 249
A +V L L FDA+ + + +KP P IF A + + + D
Sbjct: 120 ASP-RVKTLLEKFDLK-KYFDALALSYEIKAVKPNPKIFGFALAKVGY---PAVHVGDIY 174
Query: 250 -AGVQAAKAAQMRCI 263
AK + + I
Sbjct: 175 ELDYIGAKRSYVDPI 189
|
| >2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A Length = 222 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 7e-25
Identities = 50/194 (25%), Positives = 78/194 (40%), Gaps = 17/194 (8%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVD-VFAEMGV-EVTVEDFLPFMGTGEANFLGGVASV 135
+ +LFD+DG L +S A++ E+G+ E ++ ++G G L
Sbjct: 2 SLRVILFDLDGTLIDSA-KDIALALEKTLKELGLEEYYPDNVTKYIGGGVRALLE----- 55
Query: 136 KGVKGFDSEAAKKRFFEIY---LDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADR 192
K +K E + F + Y Y KP +P + KSKG K+AV S+
Sbjct: 56 KVLKDKFREEYVEVFRKHYLENPVVYTKP-----YPEIPYTLEALKSKGFKLAVVSNKLE 110
Query: 193 IKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGV 252
L L FD IV D F KP+P L +IL + +++ D A +
Sbjct: 111 ELSKKILDILNLS-GYFDLIVGGDTFGEKKPSPTPVLKTLEILGEEPEKALIVGDTDADI 169
Query: 253 QAAKAAQMRCIAVT 266
+A K A +
Sbjct: 170 EAGKRAGTKTALAL 183
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Length = 138 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 2e-24
Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 2/119 (1%)
Query: 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNA 509
D KGK V L FW C C+ LPD + + K+ D + V S E+ +N
Sbjct: 19 DYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVV-SPGHKGEQSEADFKNW 77
Query: 510 VLRYGISH-PVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEA 567
+ PV+ D L GV S+PT A + GKL+ G + + ++
Sbjct: 78 YKGLDYKNLPVLVDPSGKLLETYGVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKE 136
|
| >2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii} Length = 240 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 1e-23
Identities = 56/214 (26%), Positives = 93/214 (43%), Gaps = 32/214 (14%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVD-VFAEMGV--EVTVEDFLPFMGTG---------- 124
K A +FDMDG + ++ +A++ F + G + TVED F G+G
Sbjct: 3 KYKAAIFDMDGTILDTS-ADLTSALNYAFEQTGHRHDFTVEDIKNFFGSGVVVAVTRALA 61
Query: 125 ------EANFLGGVASVKGVKGFDSEAAKKRFFEIYLDKYAKPNSGIG---FPGALELIN 175
+ + + + ++ R E++ YA + I FPG L+L+
Sbjct: 62 YEAGSSRESLVAFGTKDEQIPEAVTQTEVNRVLEVFKPYYAD-HCQIKTGPFPGILDLMK 120
Query: 176 QCKSKGLKVAVASSADRIKVDA---NLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSAS 232
+ KG+K+AV S+ K + L P FD + + KPAPD+
Sbjct: 121 NLRQKGVKLAVVSN----KPNEAVQVLVEELFP-GSFDFALGEKSGIRRKPAPDMTSECV 175
Query: 233 KILNVPTSECIVIEDALAGVQAAKAAQMRCIAVT 266
K+L VP +C+ I D+ +Q A+ ++M IAV
Sbjct: 176 KVLGVPRDKCVYIGDSEIDIQTARNSEMDEIAVN 209
|
| >3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A* Length = 205 | Back alignment and structure |
|---|
Score = 98.1 bits (245), Expect = 2e-23
Identities = 39/192 (20%), Positives = 71/192 (36%), Gaps = 28/192 (14%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKG 137
++ +FDMDG L + A + + E + L + E+
Sbjct: 5 EIKHWVFDMDGTLTIAV-HDFAAIREAL-SIPAEDDILTHLAALPADES----------- 51
Query: 138 VKGFDSEAAKKRFFEIY---LDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIK 194
AAK + + L + ++P PGA+EL+ + +G ++ + + R
Sbjct: 52 -------AAKHAWLLEHERDLAQGSRP-----APGAVELVRELAGRGYRLGILTRNAREL 99
Query: 195 VDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQA 254
L A GL +A V KP P L ++ +V S +++ D +
Sbjct: 100 AHVTLEAIGLADCFAEADVLGRDEAPPKPHPGGLLKLAEAWDVSPSRMVMVGDYRFDLDC 159
Query: 255 AKAAQMRCIAVT 266
+AA R + V
Sbjct: 160 GRAAGTRTVLVN 171
|
| >2hsz_A Novel predicted phosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP: c.108.1.6 Length = 243 | Back alignment and structure |
|---|
Score = 98.8 bits (247), Expect = 3e-23
Identities = 36/193 (18%), Positives = 76/193 (39%), Gaps = 10/193 (5%)
Query: 81 AVLFDMDGVLCNSEEPSRRAAVD-VFAEMGV-EVTVEDFLPFMGTGEANFLGGV--ASVK 136
+ FD+DG L NS P +++ ++ + + + + ++G G + K
Sbjct: 25 LIGFDLDGTLVNSL-PDLALSINSALKDVNLPQASENLVMTWIGNGADVLSQRAVDWACK 83
Query: 137 GVKGFDSEAAKKRFFEIYLDKYAKPNSGIG---FPGALELINQCKSKGLKVAVASSADRI 193
+ +E K F + Y + N +P E + K++G +AV ++
Sbjct: 84 QAEKELTEDEFKYFKRQFGFYYGE-NLCNISRLYPNVKETLEALKAQGYILAVVTNKPTK 142
Query: 194 KVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQ 253
V L A G+ +F ++ + +KP P F + + + + D+ +
Sbjct: 143 HVQPILTAFGID-HLFSEMLGGQSLPEIKPHPAPFYYLCGKFGLYPKQILFVGDSQNDIF 201
Query: 254 AAKAAQMRCIAVT 266
AA +A + +T
Sbjct: 202 AAHSAGCAVVGLT 214
|
| >2oda_A Hypothetical protein pspto_2114; haloacid dehalogenase, phosphonoacetaldehyde hydrolase, protein binding; HET: EPE; 1.90A {Pseudomonas syringae PV} Length = 196 | Back alignment and structure |
|---|
Score = 95.4 bits (237), Expect = 2e-22
Identities = 24/134 (17%), Positives = 44/134 (32%), Gaps = 12/134 (8%)
Query: 145 AAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGL 204
A+ + D++A+ PGA + + +G+ A A
Sbjct: 21 GAQAATSDTPDDEHAQL-----TPGAQNALKALRDQGMPCAWIDELPEALSTPLAAPVN- 74
Query: 205 PVSMFDAIVSADAFENLKPAPDIFLSASKILNV-PTSECIVIEDALAGVQAAKAAQMRCI 263
D +++A P PD A LNV C++I +Q+ A + I
Sbjct: 75 -----DWMIAAPRPTAGWPQPDACWMALMALNVSQLEGCVLISGDPRLLQSGLNAGLWTI 129
Query: 264 AVTTTLSEERLKEA 277
+ + L +
Sbjct: 130 GLASCGPLCGLSPS 143
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 4e-22
Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 5/120 (4%)
Query: 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNA 509
DLKGK V L+FW C C P + K +K +V V+ K A+ N
Sbjct: 23 DLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVN---VGESK--IAVHNF 77
Query: 510 VLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569
+ YG++ PVV D D + V+ PT ++ P GK++ + G + D +
Sbjct: 78 MKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYMNLIK 137
|
| >3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3, haloacid dehalogenase-like hydrolase domain containin structural genomics; 1.55A {Homo sapiens} Length = 263 | Back alignment and structure |
|---|
Score = 94.5 bits (235), Expect = 2e-21
Identities = 38/203 (18%), Positives = 73/203 (35%), Gaps = 22/203 (10%)
Query: 81 AVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLP-----FMGTGEANFLGGVASV 135
+ +D+ L P A G+EV + + G++
Sbjct: 3 LLTWDVKDTLLRLRHPLGEAYATKARAHGLEVEPSALEQGFRQAYRAQSHSFPNYGLSHG 62
Query: 136 KGVK--------------GFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKG 181
+ G A E ++ P + GA + + +C+++G
Sbjct: 63 LTSRQWWLDVVLQTFHLAGVQDAQAVAPIAEQLYKDFSHPCTWQVLDGAEDTLRECRTRG 122
Query: 182 LKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSE 241
L++AV S+ DR +++ L GL FD +++++A KP P IF A ++ ++
Sbjct: 123 LRLAVISNFDR-RLEGILGGLGLR-EHFDFVLTSEAAGWPKPDPRIFQEALRLAHMEPVV 180
Query: 242 CIVIEDALAG-VQAAKAAQMRCI 263
+ D Q +A M
Sbjct: 181 AAHVGDNYLCDYQGPRAVGMHSF 203
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} Length = 165 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 4e-21
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 16/128 (12%)
Query: 450 DLKGKVVVLDFW-TYC--CINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAI 506
LKGK +++F+ T+C C + + PD+ ++K + FT VG+ + L +
Sbjct: 31 SLKGKAYIVNFFATWCPPCRSEI---PDMVQVQKTWASRGFTFVGI-----AVNEQLPNV 82
Query: 507 RNAVLRYGISHPVVNDGD-----MNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDL 561
+N + GI +PV+ N + + G+ PT V+ +G + + G + D
Sbjct: 83 KNYMKTQGIIYPVMMATPELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVGPRSKADF 142
Query: 562 DDLVEAAL 569
D +V+ AL
Sbjct: 143 DRIVKMAL 150
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} Length = 151 | Back alignment and structure |
|---|
Score = 90.2 bits (224), Expect = 4e-21
Identities = 30/128 (23%), Positives = 47/128 (36%), Gaps = 17/128 (13%)
Query: 450 DLKGKVVVLDFW-TYC--CINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAI 506
LK V +++ W T+C C M P + K K +VG+ + I
Sbjct: 21 SLKAPVRIVNLWATWCGPCRKEM---PAMSKWYKAQKKGSVDMVGI------ALDTSDNI 71
Query: 507 RNAVLRYGISHPVVNDGDM---NLWRELG--VNSWPTFAVVGPNGKLLAQLAGEGHRKDL 561
N + + +S+P+ N + G V P V P + GE + K L
Sbjct: 72 GNFLKQTPVSYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQTITGEVNEKSL 131
Query: 562 DDLVEAAL 569
D V+ A
Sbjct: 132 TDAVKLAH 139
|
| >2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola haloacid dehalogenase-like, PSI; 1.74A {Streptococcus pneumoniae} SCOP: c.108.1.6 Length = 210 | Back alignment and structure |
|---|
Score = 91.8 bits (229), Expect = 4e-21
Identities = 37/208 (17%), Positives = 70/208 (33%), Gaps = 15/208 (7%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEV-TVEDFLPFMGTGEANFLGGVASV- 135
++A+ FD+DG L +S A F E+GV + FMG +S
Sbjct: 3 SITAIFFDLDGTLVDSSIGIHNAFTYTFKELGVPSPDAKTIRGFMG------PPLESSFA 56
Query: 136 KGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKV 195
+ A + + Y K FP ++L+ + + + ++ D
Sbjct: 57 TCLSKDQISEAVQIYRSYYKAKGIYEAQ--LFPQIIDLLEELS-SSYPLYITTTKDTSTA 113
Query: 196 DANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAA 255
+ FD I + D+ A + + + I+I D + A
Sbjct: 114 QDMAKNLEIH-HFFDGIYGSS--PEAPHKADVIHQALQTHQLAPEQAIIIGDTKFDMLGA 170
Query: 256 KAAQMRCIAVT-TTLSEERLKEASPSLI 282
+ ++ +A+T + L P I
Sbjct: 171 RETGIQKLAITWGFGEQADLLNYQPDYI 198
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} Length = 145 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 6e-21
Identities = 22/118 (18%), Positives = 51/118 (43%), Gaps = 8/118 (6%)
Query: 452 KGKVVVLDFW-TYC--CINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRN 508
KG+ +L FW ++C C + P + + +V V+ ++E++ + + +
Sbjct: 33 KGQKTILHFWTSWCPPCKKEL---PQFQSFYDAHPSDSVKLVTVNLV--NSEQNQQVVED 87
Query: 509 AVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVE 566
+ ++ P+V D L +E + + PT ++ G++ G + L + E
Sbjct: 88 FIKANKLTFPIVLDSKGELMKEYHIITIPTSFLLNEKGEIEKTKIGPMTAEQLKEWTE 145
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Length = 152 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 7e-21
Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 12/129 (9%)
Query: 450 DLKGKVVVLDFW-TYC--CINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAI 506
DLKGK + +D W T+C C + P L+ LE+KY V + +K+ +A
Sbjct: 27 DLKGKYIYIDVWATWCGPCRGEL---PALKELEEKYAGKDIHFVSL-----SCDKNKKAW 78
Query: 507 RNAVLRYGISH-PVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLV 565
N V + + + D +N P F ++ +GK+++ +
Sbjct: 79 ENMVTKDQLKGIQLHMGTDRTFMDAYLINGIPRFILLDRDGKIISANMTRPSDPKTAEKF 138
Query: 566 EAALLFYGK 574
L G
Sbjct: 139 NELLGLEGH 147
|
| >2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032} Length = 137 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 8e-21
Identities = 16/102 (15%), Positives = 40/102 (39%), Gaps = 1/102 (0%)
Query: 167 FPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPD 226
L+ K G+ + S+ A + + D ++ + KP
Sbjct: 20 QRRWRNLLAAAKKNGVGTVILSNDPGGLGAAPIRELETN-GVVDKVLLSGELGVEKPEEA 78
Query: 227 IFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTT 268
F +A+ +++P +C++++D++ V+ A A + +
Sbjct: 79 AFQAAADAIDLPMRDCVLVDDSILNVRGAVEAGLVGVYYQQF 120
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} Length = 152 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 2e-20
Identities = 35/125 (28%), Positives = 51/125 (40%), Gaps = 13/125 (10%)
Query: 450 DLKGKVVVLDFW-TYC--CINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAI 506
D G VV LDFW ++C C P + ++ KYK F VV V+ +
Sbjct: 25 DKTGSVVYLDFWASWCGPCRQSF---PWMNQMQAKYKAKGFQVVAVNL-----DAKTGDA 76
Query: 507 RNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAG--EGHRKDLDDL 564
+ + V D R GV PT ++ NGK+L Q G ++ L+
Sbjct: 77 MKFLAQVPAEFTVAFDPKGQTPRLYGVKGMPTSFLIDRNGKVLLQHVGFRPADKEALEQQ 136
Query: 565 VEAAL 569
+ AAL
Sbjct: 137 ILAAL 141
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 2e-20
Identities = 30/120 (25%), Positives = 46/120 (38%), Gaps = 9/120 (7%)
Query: 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNA 509
L+GK VL FWT C C P L + T VG+ D+ A+++
Sbjct: 21 SLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPA--VTFVGI-----ATRADVGAMQSF 73
Query: 510 VLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGK--LLAQLAGEGHRKDLDDLVEA 567
V +Y ++ +ND D +W V P F +G + + +L V A
Sbjct: 74 VSKYNLNFTNLNDADGVIWARYNVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAA 133
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267 | Back alignment and structure |
|---|
Score = 90.3 bits (224), Expect = 5e-20
Identities = 38/282 (13%), Positives = 82/282 (29%), Gaps = 70/282 (24%)
Query: 586 SLEKDNDPRLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEG 645
+++K P K LA D ++ ++ +D + I L G I
Sbjct: 21 TMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD--- 77
Query: 646 LRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQ 705
P+G+A + ++ D++ + R L G
Sbjct: 78 ----------LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG------- 120
Query: 706 GGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGS 765
L +P + P+ +Y + + + +++G+
Sbjct: 121 ---------LVNPRGIVTDPVRGNLYWTDWNRDNP-------KIETS--------HMDGT 156
Query: 766 SS---LNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLF 822
+ + P+G++ ++ D+ + LN G R + G
Sbjct: 157 NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG--------- 207
Query: 823 KFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLD 864
LQ+P V + +Y D + + +D
Sbjct: 208 -------------LQYPFAV-TSYGKNLYYTDWKTNSVIAMD 235
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267 | Back alignment and structure |
|---|
Score = 76.0 bits (187), Expect = 3e-15
Identities = 35/215 (16%), Positives = 67/215 (31%), Gaps = 44/215 (20%)
Query: 594 RLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDD 653
+ L P +A+D L +F +DS +RI V +DG + +G
Sbjct: 72 TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG----------- 120
Query: 654 ATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQ 713
P+G+ + + LY D + + T +GT
Sbjct: 121 --LVNPRGIVTDPVRGNLYWTDWNRDNPK--------IETSHMDGTNRRIL------AQD 164
Query: 714 LLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFA 773
L P + + + ++ AG H+ E R +
Sbjct: 165 NLGLPNGLTFDAFSSQLCWVDAGTHRA-ECLNPAQPGR--------------RKVLEGLQ 209
Query: 774 QPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR 808
P ++ +Y D +++S+ A++L
Sbjct: 210 YPFAVTSYGKN--LYYTDWKTNSVIAMDLAISKEM 242
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267 | Back alignment and structure |
|---|
Score = 73.3 bits (180), Expect = 3e-14
Identities = 47/307 (15%), Positives = 90/307 (29%), Gaps = 81/307 (26%)
Query: 620 SNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENH 679
+ +I L+ N + + + +F GLA++ ++Y D
Sbjct: 7 AQTGKIERLPLERNTMKKTEAK--------AFLHIPAKVIIGLAFDCVDKVVYWTDISEP 58
Query: 680 ALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQ 739
++ T+ L SP + + ++ + +
Sbjct: 59 SIGRASLHGGEPTTIIRQD----------------LGSPEGIALDHLGRTIFWTDSQLDR 102
Query: 740 IWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRA 799
I E + +DG R +T P GI P +Y D + +
Sbjct: 103 I-EVAKMDGTQR-------------RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPK- 147
Query: 800 LNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVL----LQHPLGV-YCAKNGQIYVAD 854
I ++ DG +L L P G+ + A + Q+ D
Sbjct: 148 ----------------IETSHM------DGTNRRILAQDNLGLPNGLTFDAFSSQLCWVD 185
Query: 855 SYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNI 914
+ H+ + L+PA + L P + + NL+ D N
Sbjct: 186 AGTHRAECLNPAQPGRRK--------------VLEGLQYPFA-VTSYGKNLYYTDWKTNS 230
Query: 915 IRYLDLN 921
+ +DL
Sbjct: 231 VIAMDLA 237
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Length = 154 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 8e-20
Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 12/125 (9%)
Query: 450 DLKGKVVVLDFW-TYC--CINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAI 506
DLKG+VV+++FW T+C C + P + L PF ++ V +E A+
Sbjct: 25 DLKGQVVIVNFWATWCPPCREEI---PSMMRLNAAMAGKPFRMLCVSI----DEGGKVAV 77
Query: 507 RNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAG--EGHRKDLDDL 564
+ G + PV+ D D + + G P V+ +G +L ++ G E ++
Sbjct: 78 EEFFRKTGFTLPVLLDADKRVGKLYGTTGVPETFVIDRHGVILKKVVGAMEWDHPEVIAF 137
Query: 565 VEAAL 569
+ L
Sbjct: 138 LNNEL 142
|
| >2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.70A {Pyrococcus horikoshii} Length = 241 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 1e-19
Identities = 34/194 (17%), Positives = 71/194 (36%), Gaps = 12/194 (6%)
Query: 81 AVLFDMDGVLCNSEEPSRRA---AVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASV-- 135
+ FD+D L ++ + + A A++ G+ V E + +
Sbjct: 4 VIFFDLDDTLVDTSKLAEIARKNAIENMIRHGLPVDFETAYSELIELIKEYGSNFPYHFD 63
Query: 136 ---KGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADR 192
+ + + Y + PGA +++ + K G ++ + + +
Sbjct: 64 YLLRRLDLPYNPKWISAGVIAYHNTK--FAYLREVPGARKVLIRLKELGYELGIITDGNP 121
Query: 193 IKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDAL-AG 251
+K + L F+ ++ +D KP P IF A K NV E +++ D L +
Sbjct: 122 VKQWEKILRLEL-DDFFEHVIISDFEGVKKPHPKIFKKALKAFNVKPEEALMVGDRLYSD 180
Query: 252 VQAAKAAQMRCIAV 265
+ AK M+ +
Sbjct: 181 IYGAKRVGMKTVWF 194
|
| >2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural GENO NPPSFA; 2.20A {Pyrococcus horikoshii} Length = 235 | Back alignment and structure |
|---|
Score = 87.6 bits (217), Expect = 2e-19
Identities = 42/238 (17%), Positives = 72/238 (30%), Gaps = 31/238 (13%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVT--VEDFLPFM-----------GTG 124
+V V FD+ L + + + G+ + +
Sbjct: 3 EVKLVTFDVWNTLLDLNIMLDEFSHQLAKISGLHIKDVANAVIEVRNEIKKMRAQASEDP 62
Query: 125 EANFLGGVASVKGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKV 184
G ++ G D E K + + G E + K +GLK
Sbjct: 63 RKVLTGSQEALAGKLKVDVELVK----RATARAILNVDESLVLEGTKEALQFVKERGLKT 118
Query: 185 AVASSADRIKVD---ANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSE 241
AV + L GL + D AD + KP ++F V E
Sbjct: 119 AVIGNVMFWPGSYTRLLLERFGL-MEFIDKTFFADEVLSYKPRKEMFEKVLNSFEVKPEE 177
Query: 242 CIVIEDALAG-VQAAKAAQMRCIAVTTTLSEERLKEASPSLIRK--EIGSVS-LNDIL 295
+ I D A Q A+ M + + + + L + EI S++ L D++
Sbjct: 178 SLHIGDTYAEDYQGARKVGMWAVWIN------QEGDKVRKLEERGFEIPSIANLKDVI 229
|
| >3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase-LI superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1} Length = 200 | Back alignment and structure |
|---|
Score = 86.3 bits (214), Expect = 3e-19
Identities = 38/206 (18%), Positives = 72/206 (34%), Gaps = 21/206 (10%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKG 137
+ A+ +D+ GVL + R DV G++ +DF G
Sbjct: 3 TIKALFWDIGGVLLTNG-WDREQRADVAQRFGLDT--DDFTERHRLAAPELELG------ 53
Query: 138 VKGFDSEAAKKRFFEIYLDKYAK------PNSGIGFPGALELINQCKSKGLKVAVASSAD 191
+ +E ++ F D + P L L + ++ ++
Sbjct: 54 -RMTLAEYLEQVVFYQPRDFTPEDFRAVMEEQSQPRPEVLALARDLG-QRYRMYSLNNEG 111
Query: 192 RIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAG 251
R + + GL A ++ A +KP P ++ + V E ++++D L
Sbjct: 112 RDLNEYRIRTFGLG-EFLLAFFTSSALGVMKPNPAMYRLGLTLAQVRPEEAVMVDDRLQN 170
Query: 252 VQAAKAAQMRCIAVTTTLSEERLKEA 277
VQAA+A M + +L+E
Sbjct: 171 VQAARAVGMHAVQCV---DAAQLREE 193
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 2e-18
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 9/123 (7%)
Query: 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNA 509
D KGK V++DFW C C P L +KD FT+ GV ++ E + A
Sbjct: 26 DFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGV-----STDRREEDWKKA 80
Query: 510 VLRYGISHPVV---NDGDMNLWRELGVNSWPTFAVVGPNGKLLA-QLAGEGHRKDLDDLV 565
+ V D ++ + +P +V P GK++A +L G+ ++ V
Sbjct: 81 IEEDKSYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKELRGDDLYNTVEKFV 140
Query: 566 EAA 568
A
Sbjct: 141 NGA 143
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} Length = 165 | Back alignment and structure |
|---|
Score = 82.6 bits (204), Expect = 2e-18
Identities = 22/134 (16%), Positives = 51/134 (38%), Gaps = 18/134 (13%)
Query: 450 DLKGKVVVLDFW-TYC--CINCMHVLPDLEFLEKKYKDMPFTVV-----------GVHSA 495
++ G VV+L F +C C+ L+ L +KY+++ + G++
Sbjct: 34 NVGGDVVILWFMAAWCPSCVYMA---DLLDRLTEKYREISVIAIDFWTAEALKALGLNKP 90
Query: 496 KFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGE 555
+ E R + YG ++ D +L + V S ++ + +L
Sbjct: 91 GYPPPDTPEMFRKFIANYGDPSWIMVMDDGSLVEKFNVRSIDYIVIMDKSSNVLYAGTTP 150
Query: 556 GHRKDLDDLVEAAL 569
+L+ ++++
Sbjct: 151 -SLGELESVIKSVQ 163
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} Length = 143 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 6e-18
Identities = 14/116 (12%), Positives = 35/116 (30%), Gaps = 2/116 (1%)
Query: 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNA 509
+ G+ +L+FW L K+ + + S E ++
Sbjct: 29 NQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSI-SMDEKESIFTETVKID 87
Query: 510 VLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQ-LAGEGHRKDLDDL 564
L + L+++ + ++ G ++A + E + L +
Sbjct: 88 KLDLSTQFHEGLGKESELYKKYDLRKGFKNFLINDEGVIIAANVTPEKLTEILKAI 143
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 7e-18
Identities = 22/120 (18%), Positives = 42/120 (35%), Gaps = 11/120 (9%)
Query: 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNA 509
D++ K +L FW C +C P L K + V + E+ E
Sbjct: 28 DVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAA-----NIERKDEEWLKF 82
Query: 510 VLRYGISHPVV---NDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVE 566
+ I + + + + + P V+ N ++A+ G ++LDD +
Sbjct: 83 IRSKKIGGWLNVRDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKRIGY---ENLDDFLV 139
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Length = 136 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 2e-17
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 9/121 (7%)
Query: 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNA 509
L GK VL FW C C P + + + ++ F VGV + A++
Sbjct: 22 SLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTF--VGV-----AGLDQVPAMQEF 74
Query: 510 VLRYGISH-PVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568
V +Y + + D D ++W GV P +A V P+G + + G + +L V A
Sbjct: 75 VNKYPVKTFTQLADTDGSVWANFGVTQQPAYAFVDPHGN-VDVVRGRMSQDELTRRVTAL 133
Query: 569 L 569
Sbjct: 134 T 134
|
| >1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13 Length = 384 | Back alignment and structure |
|---|
Score = 84.5 bits (208), Expect = 2e-17
Identities = 40/255 (15%), Positives = 76/255 (29%), Gaps = 47/255 (18%)
Query: 80 SAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVT-VEDFLPFMGTGE----ANFLGGVAS 134
L +D V E+ V + + T + G
Sbjct: 131 QLPLQFLDNVKVGKNNIYAALEEFATTELHVSDATLFSLKGALWTLAQEVYQEWYLGSKL 190
Query: 135 VKGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIK 194
+ V+ + K + IY + +P L+N K G ++ +A+ +
Sbjct: 191 YEDVEKKIARTTFKTGY-IYQEIILRP-----VDEVKVLLNDLKGAGFELGIATGRPYTE 244
Query: 195 VDANLAAAGLPVSMFDA--IVSAD-----------AFENLKPAPDIFLSA---------- 231
GL + F+A I +A A KP P +++A
Sbjct: 245 TVVPFENLGL-LPYFEADFIATASDVLEAENMYPQARPLGKPNPFSYIAALYGNNRDKYE 303
Query: 232 ----SKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEER----LKEASPSLIR 283
+ V + ++ D+LA + +A+ I T L + L+ +
Sbjct: 304 SYINKQDNIVNKDDVFIVGDSLADLLSAQKIGATFIGTLTGLKGKDAAGELEAHHADYV- 362
Query: 284 KEIGSVS-LNDILTG 297
I + L +L
Sbjct: 363 --INHLGELRGVLDN 375
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} Length = 159 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 3e-17
Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 17/129 (13%)
Query: 450 DLKGKVVVLDFW-TYC--CINCMHVLPDLE--FLEKKYKDMPFTVVGVHSAKFDNEKDLE 504
L+GKVV+L F ++C C M P +E K + F ++G+ D ++ LE
Sbjct: 30 SLRGKVVMLQFTASWCGVCRKEM---PFIEKDIWLKHKDNADFALIGI-----DRDEPLE 81
Query: 505 AIRNAVLRYGISHPVVNDGDMNLWRELGVNSW--PTFAVVGPNGKLLAQLAG--EGHRKD 560
+ G+++P+ D +++ + + ++ GK++ E
Sbjct: 82 KVLAFAKSTGVTYPLGLDPGADIFAKYALRDAGITRNVLIDREGKIVKLTRLYNEEEFAS 141
Query: 561 LDDLVEAAL 569
L + L
Sbjct: 142 LVQQINEML 150
|
| >3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides thetaiotaomicron} Length = 240 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 5e-17
Identities = 36/205 (17%), Positives = 70/205 (34%), Gaps = 23/205 (11%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEA-------NFLG 130
K + FD+D + +R +V+ + + + F + + +
Sbjct: 4 KYKNLFFDLDDTIWAFSRNARDTFEEVYQKYSFDRYFDSFDHYYTLYQRRNTELWLEYGE 63
Query: 131 GVASVKGVK-----------GFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKS 179
G + + + G + EA +RF E + P P A E++
Sbjct: 64 GKVTKEELNRQRFFYPLQAVGVEDEALAERFSEDFFAII--PTKSGLMPHAKEVLEYLA- 120
Query: 180 KGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPT 239
+ + S+ R + +AG+ F I+ ++ LKP P+IF A
Sbjct: 121 PQYNLYILSNGFRELQSRKMRSAGV-DRYFKKIILSEDLGVLKPRPEIFHFALSATQSEL 179
Query: 240 SECIVIEDALAG-VQAAKAAQMRCI 263
E ++I D+ + A M
Sbjct: 180 RESLMIGDSWEADITGAHGVGMHQA 204
|
| >2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomic protein structure initiative, midwest center for structural genomics, MCSG; HET: G1P; 2.00A {Escherichia coli} SCOP: c.108.1.2 Length = 206 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 6e-17
Identities = 29/209 (13%), Positives = 71/209 (33%), Gaps = 15/209 (7%)
Query: 74 SKWGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEAN--FLGG 131
++ +FD+ V+ + + ++++ + + GEA G
Sbjct: 2 ARKEAKMLYIFDLGNVIVDI---DFNRVLGAWSDLT-RIPLASLKKSFHMGEAFHQHERG 57
Query: 132 VASVKGV-KGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSA 190
S + + E A +E + + + P + ++++ + +G +V V S+
Sbjct: 58 EISDEAFAEALCHEMALPLSYEQFSHGWQAVFVAL-RPEVIAIMHKLREQGHRVVVLSNT 116
Query: 191 DRIKVDANLAAAGLPVSMFDAIV-SADAFENL-KPAPDIFLSASKILNVPTSECIVIEDA 248
+R+ D I S D + KP I+ + S+ + +D
Sbjct: 117 NRLHTTFWPEEYPEIRDAADHIYLSQD--LGMRKPEARIYQHVLQAEGFSPSDTVFFDDN 174
Query: 249 LAGVQAAKAAQMRCIAVTTTLSEERLKEA 277
++ A + I V + + +
Sbjct: 175 ADNIEGANQLGITSILVK---DKTTIPDY 200
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Length = 158 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 1e-16
Identities = 26/138 (18%), Positives = 52/138 (37%), Gaps = 21/138 (15%)
Query: 450 DLKGKVVVLDFW-TYC--CINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAI 506
+GK+V+++FW ++C C + M P ++ L K + V+ V+ +
Sbjct: 38 QYRGKIVLVNFWASWCPYCRDEM---PSMDRLVKSFPKGDLVVLAVNVE--------KRF 86
Query: 507 RNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVE 566
R +S ++D + + G N P +V G + ++ G + D
Sbjct: 87 PEKYRRAPVSFNFLSDATGQVQQRYGANRLPDTFIVDRKGIIRQRVTGG---IEWDAPKV 143
Query: 567 AALLFYGKKKLLDNTPLP 584
+ L K L +
Sbjct: 144 VSYL----KSLEGHHHHH 157
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} Length = 183 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 2e-16
Identities = 24/132 (18%), Positives = 52/132 (39%), Gaps = 19/132 (14%)
Query: 450 DLKGKVVVLDFW-TYC--CINCMHVLPDLEFLEKKYKDM------PFTVVGVHSAKFDNE 500
D + +VV+L+ W +C C + DL+ + ++ + TV+G++ +
Sbjct: 56 DFENQVVILNAWGQWCAPCRSES---DDLQIIHEELQAAGNGDTPGGTVLGINV----RD 108
Query: 501 KDLEAIRNAVLRYGISHPVVNDGDMNL---WRELGVNSWPTFAVVGPNGKLLAQLAGEGH 557
+ ++ V G+ +P + D + + PT V+ + A E
Sbjct: 109 YSRDIAQDFVTDNGLDYPSIYDPPFMTAASLGGVPASVIPTTIVLDKQHRPAAVFLREVT 168
Query: 558 RKDLDDLVEAAL 569
KD+ D+ +
Sbjct: 169 SKDVLDVALPLV 180
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 2e-16
Identities = 13/106 (12%), Positives = 39/106 (36%), Gaps = 10/106 (9%)
Query: 450 DLKGKVVVLDFW-TYC--CINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAI 506
LK + +L F+ C C + ++ + ++ V+ ++ +++ E
Sbjct: 24 RLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYP-----DENREEW 78
Query: 507 RNAVLRYGISHPVVND--GDMNLWRELGVNSWPTFAVVGPNGKLLA 550
+ V + GD+ + + + PT ++ +++
Sbjct: 79 ATKAVYMPQGWIVGWNKAGDIRTRQLYDIRATPTIYLLDGRKRVIL 124
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Length = 186 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 2e-16
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 17/130 (13%)
Query: 450 DLKGKVVVLDFW-TYC--CINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAI 506
D +GK ++++ W T+C C M P L+ L+ K F VV ++ + +D E
Sbjct: 57 DFRGKTLLVNLWATWCVPCRKEM---PALDELQGKLSGPNFEVVAINI----DTRDPEKP 109
Query: 507 RNAVLRYGISH-PVVNDGDMNLWRELG----VNSWPTFAVVGPNGKLLAQLAG--EGHRK 559
+ + ++ ND ++++L PT +V P G +A +AG E +
Sbjct: 110 KTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGPAEWASE 169
Query: 560 DLDDLVEAAL 569
D L+ AA
Sbjct: 170 DALKLIRAAT 179
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} Length = 148 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 3e-16
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 10/122 (8%)
Query: 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKY-KDMPFTVVGVHSAKFDNEKDLEAIRN 508
+ + ++L+FW C +L+ L K+Y K+ F ++G+ + D EA
Sbjct: 30 RFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGI-----SLDIDREAWET 84
Query: 509 AVLRYGISHPVVND---GDMNLWRELGVNSWPTFAVVGPNGKLLAQ-LAGEGHRKDLDDL 564
A+ + +S V D ++ + + PT ++ P GK+LA+ + GE L +L
Sbjct: 85 AIKKDTLSWDQVCDFTGLSSETAKQYAILTLPTNILLSPTGKILARDIQGEALTGKLKEL 144
Query: 565 VE 566
++
Sbjct: 145 LK 146
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Length = 152 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 4e-16
Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 13/123 (10%)
Query: 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNA 509
DLKGKVV++DF Y L L KY F + + + D + +
Sbjct: 32 DLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQI-----SLDGDEHFWKTS 86
Query: 510 VLRYGISHPVVNDG---DMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVE 566
+ V D + V + P+ +V N +L A+ KDLD+ ++
Sbjct: 87 A--DNLPWVCVRDANGAYSSYISLYNVTNLPSVFLVNRNNELSARGENI---KDLDEAIK 141
Query: 567 AAL 569
L
Sbjct: 142 KLL 144
|
| >2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis} Length = 211 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 4e-16
Identities = 38/220 (17%), Positives = 74/220 (33%), Gaps = 25/220 (11%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEAN--FLGGVASV 135
+ ++FD+ GVL + +R ++ F +GV +E+ L G S
Sbjct: 4 MIRNIVFDLGGVLIH---LNREESIRRFKAIGVA-DIEEMLDPYLQKGLFLDLESGRKSE 59
Query: 136 KGV-----KGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSA 190
+ + E ++ ++ L ++ + S+
Sbjct: 60 EEFRTELSRYIGKELTYQQVYDALLGFL------EEISAEKFDYIDSLRPDYRLFLLSNT 113
Query: 191 DRIKVDANLAAAGLPV-----SMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVI 245
+ +D ++ LP S FD + ++ KP DIFL + E + I
Sbjct: 114 NPYVLDLAMSPRFLPSGRTLDSFFDKVYASCQMGKYKPNEDIFLEMIADSGMKPEETLFI 173
Query: 246 EDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKE 285
+D A V A+ + E A L+R++
Sbjct: 174 DDGPANVATAERLGFHTYCPD---NGENWIPAITRLLREQ 210
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 82.2 bits (202), Expect = 4e-16
Identities = 41/294 (13%), Positives = 85/294 (28%), Gaps = 63/294 (21%)
Query: 583 LPLSLEKDNDPRLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSG 642
+ + ++ D L L+ + D L+ +L+ DS N I DG+ +
Sbjct: 322 MVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTV---- 377
Query: 643 EEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGS 702
+ +P L+ + +Y + + +V +
Sbjct: 378 ---VVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGE---- 430
Query: 703 DYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNL 762
+ P V P +Y + + RA L
Sbjct: 431 ------------QDRPRAVVVNPEKGYMYFTNLQERS-------PKIERA--------AL 463
Query: 763 NGSSS---LNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPD 819
+G+ + ++P ++L +++ ADS+ I + +L +L + + P
Sbjct: 464 DGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQPV 523
Query: 820 NLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTL 873
L F + +Y D I+K+D T
Sbjct: 524 GLTVFENW----------------------LYWIDKQQQMIEKIDMTGREGRTK 555
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 75.6 bits (185), Expect = 5e-14
Identities = 54/349 (15%), Positives = 106/349 (30%), Gaps = 62/349 (17%)
Query: 594 RLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDD 653
+ L +P +A+D L L+ +D+ NRI V+ LDG +
Sbjct: 73 HVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKD----------- 121
Query: 654 ATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQ 713
+ P+ LA + + +Y + + ++ + RT
Sbjct: 122 --LDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPN--------------- 164
Query: 714 LLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFA 773
+ + ++Y + I E S + G+ R +
Sbjct: 165 -VGRANGLTIDYAKRRLYWTDLDTNLI-ESSNMLGLNR--------------EVIADDLP 208
Query: 774 QPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKF--------- 824
P G++ IY D SI N +G +R + G + ++ F
Sbjct: 209 HPFGLTQ--YQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWN 266
Query: 825 --GDRDGMGSEVLLQHPLGVYC--AKNGQIYVADSYNHKIKKLDPASNRVSTLAGIG--K 878
+G S + L P+G + AD+ ++ S + + +
Sbjct: 267 ECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDE 326
Query: 879 AGFKDGAALAAQLSEPAGI-IEAQNGNLFIADTNNNIIRYLDLNKEEPE 926
D L I + + L+ D+ N+IR + +
Sbjct: 327 QQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGF 375
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 72.9 bits (178), Expect = 3e-13
Identities = 45/285 (15%), Positives = 96/285 (33%), Gaps = 66/285 (23%)
Query: 589 KDNDPRLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRD 648
+N+ + + +K L D+ +NR++ +D + I ++G+ + + G
Sbjct: 25 NNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFG------ 78
Query: 649 GSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGE 708
+ P+G+A + LY ADT + + + L
Sbjct: 79 -------LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKD---------- 121
Query: 709 KGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSL 768
L+SP + P +Y G + + +DG R ++L
Sbjct: 122 ------LDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER--------------TTL 161
Query: 769 NTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRD 828
+ + +G+++ +Y D +++ I + N+ ++A
Sbjct: 162 VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADD--------------- 206
Query: 829 GMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTL 873
L HP G+ IY D I++ + S + T+
Sbjct: 207 -------LPHPFGL-TQYQDYIYWTDWSRRSIERANKTSGQNRTI 243
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 57.9 bits (139), Expect = 1e-08
Identities = 44/332 (13%), Positives = 91/332 (27%), Gaps = 69/332 (20%)
Query: 591 NDPRLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGS 650
++ + L ID RL+ +D + N I +++ G I
Sbjct: 156 SERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADD--------- 206
Query: 651 FDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKG 710
P GL +Y D ++ + + RT+ DY
Sbjct: 207 -----LPHPFGLTQYQDY--IYWTDWSRRSIERANKTSGQNRTII---QGHLDYVMDILV 256
Query: 711 TSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNT 770
S W+ C ++ +A G
Sbjct: 257 FHSSRQSGWNECASSNGHCSHLCLAVPV------------------------GGFVCGCP 292
Query: 771 SFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGM 830
+ + + + ++ S+ S+I + + S D I P +
Sbjct: 293 AHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSP-----DIILPI--------HSL 339
Query: 831 GSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQ 890
+ + Y + Q+Y DS + I+K ++ T+
Sbjct: 340 RNVRAI-----DYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVV-------SSVPSQNL 387
Query: 891 LSEPAGI-IEAQNGNLFIADTNNNIIRYLDLN 921
+P + I+ + ++ N+I L+
Sbjct: 388 EIQPYDLSIDIYSRYIYWTCEATNVINVTRLD 419
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 2e-04
Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 20/103 (19%)
Query: 826 DRDGMGSEVL-----LQHPLGV-YCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKA 879
+ + V ++ + + + +IY D I + + + + G
Sbjct: 21 SLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFG-- 78
Query: 880 GFKDGAALAAQLSEPAGI-IEAQNGNLFIADTNNNIIRYLDLN 921
L P G+ ++ NL+ ADT N I L+
Sbjct: 79 -----------LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLD 110
|
| >2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A Length = 260 | Back alignment and structure |
|---|
Score = 78.3 bits (193), Expect = 5e-16
Identities = 38/206 (18%), Positives = 78/206 (37%), Gaps = 24/206 (11%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFM------GTGEANFLGG 131
+V AV FD+D L ++ SRR ++V + + ++ + + F
Sbjct: 17 RVRAVFFDLDNTLIDTAGASRRGMLEVIKLLQSKYHYKEEAEIICDKVQVKLSKECFHPY 76
Query: 132 VASVKGVK-------------GFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCK 178
+ V+ G D+ + + ++ + ++ + +
Sbjct: 77 STCITDVRTSHWEEAIQETKGGADNRKLAEECYFLWKSTRLQHMIL--ADDVKAMLTELR 134
Query: 179 SKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVP 238
K +++ + ++ DR + A S FDAIV + KPAP IF +L V
Sbjct: 135 -KEVRLLLLTNGDRQTQREKIEACAC-QSYFDAIVIGGEQKEEKPAPSIFYHCCDLLGVQ 192
Query: 239 TSECIVIEDALAG-VQAAKAAQMRCI 263
+C+++ D L +Q A ++
Sbjct: 193 PGDCVMVGDTLETDIQGGLNAGLKAT 218
|
| >3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB: 3i76_A Length = 238 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 9e-16
Identities = 31/200 (15%), Positives = 67/200 (33%), Gaps = 18/200 (9%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGE---ANFLGGVAS 134
+ +LFD+D + + + A +F + + +T + + + F G +
Sbjct: 6 RYRTLLFDVDDTILDFQAAEALALRLLFEDQNIPLTNDMKAQYKTINQGLWRAFEEGKMT 65
Query: 135 VKGV---------KGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVA 185
V K + EA + Y GA +LI+ + + +
Sbjct: 66 RDEVVNTRFSALLKEYGYEADGALLEQKYRRFL--EEGHQLIDGAFDLISNLQQQF-DLY 122
Query: 186 VASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSA-SKILNVPTSECIV 244
+ ++ L +GL F I ++ KP + F +I ++
Sbjct: 123 IVTNGVSHTQYKRLRDSGL-FPFFKDIFVSEDTGFQKPMKEYFNYVFERIPQFSAEHTLI 181
Query: 245 IEDALAG-VQAAKAAQMRCI 263
I D+L ++ + A +
Sbjct: 182 IGDSLTADIKGGQLAGLDTC 201
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Length = 142 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 1e-15
Identities = 11/106 (10%), Positives = 32/106 (30%), Gaps = 10/106 (9%)
Query: 450 DLKGKVVVLDFWTYCCINCMHVLPDLE---FLEKKYKDMPFTVVGVHSAKFDNEKDLEAI 506
+ +L C C ++ L+ + V+ ++ +++L+
Sbjct: 28 QFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYP-----DEELDEW 82
Query: 507 RNAVLRYGISHPVVND--GDMNLWRELGVNSWPTFAVVGPNGKLLA 550
+ + D + + + PT ++ N +L
Sbjct: 83 KKHRNDFAKEWTNGYDKELVIKNKNLYDLRAIPTLYLLDKNKTVLL 128
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 79.1 bits (194), Expect = 3e-15
Identities = 64/369 (17%), Positives = 113/369 (30%), Gaps = 65/369 (17%)
Query: 590 DNDPRLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDG 649
++ + S L P LA D L +L+ +DS NRI V++LDG+ +
Sbjct: 73 ESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQE------- 125
Query: 650 SFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEK 709
++P+ +A + +Y D E ++ + R + N
Sbjct: 126 ------LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE---------- 169
Query: 710 GTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLN 769
+ P + +K+Y A A + I S +DG R + +
Sbjct: 170 -----IYWPNGLTLDYEEQKLYWADAKLNFI-HKSNLDGTNR-------------QAVVK 210
Query: 770 TSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR------------LLAGGDPIF 817
S P ++L D +Y D + SI A N TG + A
Sbjct: 211 GSLPHPFALTLFEDI--LYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQ 268
Query: 818 PDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIG 877
P+ G +G S + L P+ + V N K K +
Sbjct: 269 PNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDL 328
Query: 878 KAGFKDGAALA------AQLSEPAGI-IEAQNGNLFIADTNNNIIRYLDLNKEEPELQTL 930
+ D + I + G ++ D IR ++ + +
Sbjct: 329 RRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQ--FV 386
Query: 931 ELKGVQPPT 939
+ P
Sbjct: 387 VTAQIAHPD 395
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 77.9 bits (191), Expect = 9e-15
Identities = 45/283 (15%), Positives = 83/283 (29%), Gaps = 64/283 (22%)
Query: 591 NDPRLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGS 650
D L ++ + D + ++ +D I + +DG+ + ++
Sbjct: 339 TDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQ-------- 390
Query: 651 FDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKG 710
P G+A + LY DT + + L
Sbjct: 391 -----IAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISED------------ 433
Query: 711 TSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNT 770
L P + P+ +Y G+ E + +DG R +NT
Sbjct: 434 ----LEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRV-------------VLVNT 476
Query: 771 SFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGM 830
S P+G++L D +IY D+++ I +N G R+L GD
Sbjct: 477 SLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDY--- 533
Query: 831 GSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTL 873
+Y D I+++ S +
Sbjct: 534 -------------------VYWTDWQRRSIERVHKRSAEREVI 557
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 72.9 bits (178), Expect = 3e-13
Identities = 43/274 (15%), Positives = 85/274 (31%), Gaps = 57/274 (20%)
Query: 591 NDPRLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGS 650
+ + L+ + + ++ SD + I T+ + VQ
Sbjct: 30 ENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------ 77
Query: 651 FDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKG 710
+ P GLA + LY D+E + + + + L
Sbjct: 78 VVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQE------------ 125
Query: 711 TSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNT 770
L+ P + P + +Y G+ E + +DG +R +N+
Sbjct: 126 ----LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-------------FIIINS 168
Query: 771 SFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGM 830
P+G++L + ++Y AD++ + I NL + + G P L F D
Sbjct: 169 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDI--- 225
Query: 831 GSEVLLQHPLGVYCA--KNGQIYVADSYNHKIKK 862
+Y I + Y + +
Sbjct: 226 -----------LYWTDWSTHSILACNKYTGEGLR 248
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 71.0 bits (173), Expect = 1e-12
Identities = 43/262 (16%), Positives = 83/262 (31%), Gaps = 54/262 (20%)
Query: 594 RLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDD 653
+ T+ + P +A+D + L+ +D+ +RI VT L+G + S
Sbjct: 385 FVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISED----------- 433
Query: 654 ATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQ 713
P+ + + +Y D E ++ + R + N +
Sbjct: 434 --LEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTS-------------- 477
Query: 714 LLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFA 773
L P + K+Y A +I E DG R +
Sbjct: 478 -LGWPNGLALDYDEGKIYWGDAKTDKI-EVMNTDGTGR-------------RVLVEDKIP 522
Query: 774 QPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGG----------DPIFPDNLFK 823
G +L D+ +Y D + SI ++ ++ ++ +
Sbjct: 523 HIFGFTLLGDY--VYWTDWQRRSIERVHKRSAEREVIIDQLPDLMGLKATNVHRVIGSNP 580
Query: 824 FGDRDGMGSEVLLQHPLGVYCA 845
+ +G S + L P G+ CA
Sbjct: 581 CAEENGGCSHLCLYRPQGLRCA 602
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 67.9 bits (165), Expect = 1e-11
Identities = 51/351 (14%), Positives = 99/351 (28%), Gaps = 72/351 (20%)
Query: 586 SLEKDNDPRLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEG 645
++ + + S + +P L +D +L+ +D+ N I ++LDG +
Sbjct: 156 GMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--- 212
Query: 646 LRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREID-FVNDTVRTLAGNGTKGSD- 703
P L +++LY D H++ + + + +R + + D
Sbjct: 213 ----------LPHPFALTLF--EDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDI 260
Query: 704 --------------YQGGEKGTSQL-LNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDG 748
G S L L SP Y+ + + + +
Sbjct: 261 HAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVK-LLENGKTCKDGATEL 319
Query: 749 VTRAFSGDGYERNLNGSS-----SLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLK 803
+ A D +L+ I P IY D E +IR +
Sbjct: 320 LLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFID 379
Query: 804 TGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKL 863
GS+ + PD + +Y D+ +I+
Sbjct: 380 GSGSQFVVTAQIAHPDGI--------------------AVDWVARNLYWTDTGTDRIEVT 419
Query: 864 DPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGI-IEAQNGNLFIADTNNN 913
L ++ L EP I ++ G ++ D
Sbjct: 420 RLNGTMRKIL-------------ISEDLEEPRAIVLDPMVGYMYWTDWGEI 457
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} Length = 150 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 4e-15
Identities = 27/127 (21%), Positives = 59/127 (46%), Gaps = 14/127 (11%)
Query: 450 DLKGKVVVLDFW-TYC--CINCMHVLPDLEFLEKKYK-DMPFTVVGVHSAKFDNEKDLEA 505
K K ++++FW ++ +L + KKYK + ++G+ + D +
Sbjct: 30 AFKQKSLLINFWASWNDSISQKQS-NSELREIYKKYKKNKYIGMLGI-----SLDVDKQQ 83
Query: 506 IRNAVLRYGISHPVVNDGDMN---LWRELGVNSWPTFAVVGPNGKLLAQ-LAGEGHRKDL 561
++A+ R + V D + ++ + P ++ +GK+LA+ L GE +K +
Sbjct: 84 WKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYKIPANILLSSDGKILAKNLRGEELKKKI 143
Query: 562 DDLVEAA 568
+++VE A
Sbjct: 144 ENIVEEA 150
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318 | Back alignment and structure |
|---|
Score = 74.0 bits (181), Expect = 3e-14
Identities = 43/283 (15%), Positives = 86/283 (30%), Gaps = 63/283 (22%)
Query: 591 NDPRLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGS 650
+ + L+ + + ++ SD + I T+ + S + + G
Sbjct: 25 ENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNK------TESVQNVVVSG- 77
Query: 651 FDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKG 710
P GLA + LY D+E + + + + L
Sbjct: 78 -----LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQE------------ 120
Query: 711 TSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNT 770
L+ P + P + +Y G+ E + +DG +R +N+
Sbjct: 121 ----LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-------------FIIINS 163
Query: 771 SFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGM 830
P+G++L + ++Y AD++ + I NL + + G
Sbjct: 164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS---------------- 207
Query: 831 GSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTL 873
L HP + +Y D H I + +
Sbjct: 208 -----LPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGLRE 244
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318 | Back alignment and structure |
|---|
Score = 72.4 bits (177), Expect = 1e-13
Identities = 46/221 (20%), Positives = 79/221 (35%), Gaps = 44/221 (19%)
Query: 588 EKDNDPRLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLR 647
+ ++ + S L P LA D L +L+ +DS NRI V++LDG+ +
Sbjct: 66 KTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQE----- 120
Query: 648 DGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGG 707
++P+ +A + +Y D E ++ + R + N
Sbjct: 121 --------LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE-------- 164
Query: 708 EKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSS 767
+ P + +K+Y A A + I S +DG R +
Sbjct: 165 -------IYWPNGLTLDYEEQKLYWADAKLNFI-HKSNLDGTNR-------------QAV 203
Query: 768 LNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR 808
+ S P ++L D +Y D + SI A N TG
Sbjct: 204 VKGSLPHPFALTLFEDI--LYWTDWSTHSILACNKYTGEGL 242
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 4e-05
Identities = 41/259 (15%), Positives = 76/259 (29%), Gaps = 75/259 (28%)
Query: 670 LLYVADTENHALREIDFVNDT-VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINE 728
LL A+ LR +D N T+ G L V + +
Sbjct: 6 LLLYAN--RRDLRLVDATNGKENATIVVGG----------------LEDAAAVDFVFSHG 47
Query: 729 KVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSS----LNTSFAQPSGISLSPDF 784
+Y W + + + R N + S + + P G++
Sbjct: 48 LIY---------WSDVSEEAIKRT--------EFNKTESVQNVVVSGLLSPDGLACDWLG 90
Query: 785 MEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLG-VY 843
++Y DSE++ I NL ++L + L P
Sbjct: 91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQE---------------------LDQPRAIAL 129
Query: 844 CAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGI-IEAQN 902
+G +Y D + G G + +++ P G+ ++ +
Sbjct: 130 DPSSGFMYWTDWGEV------------PKIERAGMDGSSRFIIINSEIYWPNGLTLDYEE 177
Query: 903 GNLFIADTNNNIIRYLDLN 921
L+ AD N I +L+
Sbjct: 178 QKLYWADAKLNFIHKSNLD 196
|
| >2p11_A Hypothetical protein; putative haloacid dehalogenase-like hydrolase, structural GE joint center for structural genomics, JCSG; 2.20A {Burkholderia xenovorans} Length = 231 | Back alignment and structure |
|---|
Score = 71.8 bits (175), Expect = 6e-14
Identities = 34/183 (18%), Positives = 64/183 (34%), Gaps = 22/183 (12%)
Query: 82 VLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGT----GEANFLGGVASVKG 137
LFD D L +++ + E G + + + F G A++LG + +
Sbjct: 14 FLFDCDNTLLDNDHVLADLRAHMMREFGAQNSARYWEIFETLRTELGYADYLGALQRYRL 73
Query: 138 VKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDA 197
+ D+ F I ++ +PGAL + ++G + S D +
Sbjct: 74 EQPRDTRLLLMSSFLIDYPFASRV-----YPGALNALRHLGARG-PTVILSDGDVVFQPR 127
Query: 198 NLAAAGLPVSMFDAIVSADAFEN--LKPAPDIFLSASKILNVPTSECIVIEDALAGVQAA 255
+A +GL D E L + + P ++++D L + A
Sbjct: 128 KIARSGL----------WDEVEGRVLIYIHKELMLDQVMECYPARHYVMVDDKLRILAAM 177
Query: 256 KAA 258
K A
Sbjct: 178 KKA 180
|
| >3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 1.59A {Pyrococcus horikoshii} PDB: 1x42_A Length = 234 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 6e-14
Identities = 41/199 (20%), Positives = 76/199 (38%), Gaps = 21/199 (10%)
Query: 81 AVLFDMDGVLCNSEEPSRRAAVDVFAEMG-----VEVTVEDFLPFMGTGEANFLGGVAS- 134
AV FD G L + E ++ + +G + ++++ +N+ G
Sbjct: 4 AVFFDSLGTLNSVEGAAKSHLKIMEEVLGDYPLNPKTLLDEYEKLTREAFSNYAGKPYRP 63
Query: 135 ---------VKGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVA 185
K + + + + F+EI L + +P +E++ K K V
Sbjct: 64 LRDILEEVMRKLAEKYGFKYPE-NFWEISLRMSQRYGEL--YPEVVEVLKSLKGK-YHVG 119
Query: 186 VASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVI 245
+ + +D + A L A G+ +FD+I +++ KP P IF A K V E + +
Sbjct: 120 MITDSDTEQAMAFLDALGI-KDLFDSITTSEEAGFFKPHPRIFELALKKAGVKGEEAVYV 178
Query: 246 EDAL-AGVQAAKAAQMRCI 263
D +K M I
Sbjct: 179 GDNPVKDCGGSKNLGMTSI 197
|
| >3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes} Length = 189 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 1e-13
Identities = 25/129 (19%), Positives = 48/129 (37%), Gaps = 12/129 (9%)
Query: 143 SEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVD---ANL 199
+ R+ LD Y + + A E + + K G K A+ S+ + L
Sbjct: 15 NTVPNTRYDHHPLDTYPE---VVLRKNAKETLEKVKQLGFKQAILSNTATSDTEVIKRVL 71
Query: 200 AAAGLPVSMFDAIVSADAFENL----KPAPDIFLSASKILNVPTSECIVIEDALAG-VQA 254
G+ + FD I ++++ KP IF L + +E +++ + +
Sbjct: 72 TNFGI-IDYFDFIYASNSELQPGKMEKPDKTIFDFTLNALQIDKTEAVMVGNTFESDIIG 130
Query: 255 AKAAQMRCI 263
A A + I
Sbjct: 131 ANRAGIHAI 139
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} Length = 154 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 2e-13
Identities = 28/127 (22%), Positives = 43/127 (33%), Gaps = 9/127 (7%)
Query: 446 QFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEA 505
K V+ FW C C P L + ++ PF V+ + E
Sbjct: 23 PVTPATVSKPAVIVFWASWCTVCKAEFPGLHRVAEETGV-PFYVISR-----EPRDTREV 76
Query: 506 IRNAVLRYGISHPVV---NDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLD 562
+ + Y P++ D + V P VV GK++A AG R+ L
Sbjct: 77 VLEYMKTYPRFIPLLASDRDRPHEVAARFKVLGQPWTFVVDREGKVVALFAGRAGREALL 136
Query: 563 DLVEAAL 569
D + A
Sbjct: 137 DALLLAG 143
|
| >1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A Length = 232 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 2e-13
Identities = 37/243 (15%), Positives = 76/243 (31%), Gaps = 36/243 (14%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGG------ 131
+ + FD+ G L + + F G E++ + L
Sbjct: 3 YIKGIAFDLYGTLFDVH-SVVGRCDEAFPGRGREISALWRQKQLEYTWLRSLMNRYVNFQ 61
Query: 132 ---------VASVKGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGL 182
G+ + + YL F + + + K +GL
Sbjct: 62 QATEDALRFTCRHLGLD--LDARTRSTLCDAYLRLAP-------FSEVPDSLRELKRRGL 112
Query: 183 KVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSEC 242
K+A+ S+ +DA ++ AGL FD ++S D + KP ++ A + L + S
Sbjct: 113 KLAILSNGSPQSIDAVVSHAGLR-DGFDHLLSVDPVQVYKPDNRVYELAEQALGLDRSAI 171
Query: 243 IVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRK---EIGSVS-LNDILTGG 298
+ + A+ + R + + E+ S+ + ++
Sbjct: 172 LFVASNAWDATGARYFGFPTCWI------NRTGNVFEEMGQTPDWEVTSLRAVVELFETA 225
Query: 299 GGS 301
G
Sbjct: 226 AGK 228
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349 | Back alignment and structure |
|---|
Score = 71.8 bits (175), Expect = 3e-13
Identities = 44/224 (19%), Positives = 85/224 (37%), Gaps = 44/224 (19%)
Query: 585 LSLEKDNDPRLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEE 644
+L N + ++ L+ PG LA+D ++++L+ +DS +RI V +LDG +
Sbjct: 100 ANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQS-- 157
Query: 645 GLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDY 704
+P+ +A + + +Y D N E ++ + R + +
Sbjct: 158 -----------LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTH----- 201
Query: 705 QGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNG 764
L P + ++Y A H I E + +DG R
Sbjct: 202 ----------LFWPNGLTIDYAGRRMYWVDAKHHVI-ERANLDGSHR------------- 237
Query: 765 SSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR 808
+ ++ P I++ D +Y D + SI + N TG ++
Sbjct: 238 KAVISQGLPHPFAITVFEDS--LYWTDWHTKSINSANKFTGKNQ 279
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 7e-11
Identities = 44/276 (15%), Positives = 83/276 (30%), Gaps = 64/276 (23%)
Query: 589 KDNDPRLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRD 648
++ L + L+ L +F SD +RI+ +L+G+ + ++ S+G
Sbjct: 61 HRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG------ 114
Query: 649 GSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGE 708
P GLA + + LY D+ + + + L
Sbjct: 115 -------LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQS---------- 157
Query: 709 KGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSL 768
L P + P+ +Y G E S++DG R
Sbjct: 158 ------LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-------------RIIA 198
Query: 769 NTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRD 828
+T P+G+++ +Y D++ I NL + +
Sbjct: 199 DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG-------------- 244
Query: 829 GMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLD 864
L HP + +Y D + I +
Sbjct: 245 -------LPHPFAI-TVFEDSLYWTDWHTKSINSAN 272
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 8e-07
Identities = 45/309 (14%), Positives = 93/309 (30%), Gaps = 79/309 (25%)
Query: 612 NNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLL 671
+ +N I + + L ++ ++ L+
Sbjct: 42 GPEPVLLFANRIDIRQVLPHRSEYTLL--------------LNNLENAIALDFHHRRELV 87
Query: 672 YVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVY 731
+ +D + + V + G L SP + +++K+Y
Sbjct: 88 FWSDVTLDRILRANLNGSNVEEVVSTG----------------LESPGGLAVDWVHDKLY 131
Query: 732 IAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVAD 791
+G +I E + +DG R + L L S +P I+L P IY D
Sbjct: 132 WTDSGTSRI-EVANLDGAHR--------KVL-----LWQSLEKPRAIALHPMEGTIYWTD 177
Query: 792 -SESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQI 850
+ I A ++ G R++A +P+ L ++
Sbjct: 178 WGNTPRIEASSMDGSGRRIIADTHLFWPNGLT--------------------IDYAGRRM 217
Query: 851 YVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADT 910
Y D+ +H I++ + + + ++ L P I +L+ D
Sbjct: 218 YWVDAKHHVIERANLDGSHRKAV-------------ISQGLPHPFA-ITVFEDSLYWTDW 263
Query: 911 NNNIIRYLD 919
+ I +
Sbjct: 264 HTKSINSAN 272
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316 | Back alignment and structure |
|---|
Score = 71.2 bits (174), Expect = 3e-13
Identities = 43/274 (15%), Positives = 86/274 (31%), Gaps = 58/274 (21%)
Query: 591 NDPRLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGS 650
++ L+ L ++ +NR++ SD + I T LD G S + +
Sbjct: 20 SEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH----GVSSYDTVISRD 75
Query: 651 FDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKG 710
P GLA + + +Y D+ + D +TL
Sbjct: 76 -----IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN------------ 118
Query: 711 TSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNT 770
+ P + P++ +Y G + ++GV S +
Sbjct: 119 ----GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-------------YSLVTE 161
Query: 771 SFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGM 830
+ P+GI+L +Y DS+ SI ++++ G + + +
Sbjct: 162 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA------------ 209
Query: 831 GSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLD 864
HP + +++ D N I +
Sbjct: 210 -------HPFSL-AVFEDKVFWTDIINEAIFSAN 235
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316 | Back alignment and structure |
|---|
Score = 69.3 bits (169), Expect = 1e-12
Identities = 29/216 (13%), Positives = 69/216 (31%), Gaps = 44/216 (20%)
Query: 594 RLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDD 653
+ + ++ P LA+D +++ ++ +DS + V D G +
Sbjct: 70 TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN----------- 118
Query: 654 ATFNRPQGLAYNAKKNLLYVADTENHA-LREIDFVNDTVRTLAGNGTKGSDYQGGEKGTS 712
++P+ + + +Y D A +++ + +L
Sbjct: 119 --GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN-------------- 162
Query: 713 QLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSF 772
+ P + ++ ++Y + H I V+G R + L
Sbjct: 163 --IQWPNGITLDLLSGRLYWVDSKLHSI-SSIDVNGGNR-------------KTILEDEK 206
Query: 773 AQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR 808
SL+ +++ D + +I + N TG
Sbjct: 207 RLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDV 242
|
| >4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 1.65A {Bacteroides thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A Length = 229 | Back alignment and structure |
|---|
Score = 67.9 bits (166), Expect = 9e-13
Identities = 31/205 (15%), Positives = 63/205 (30%), Gaps = 30/205 (14%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTG-----------EA 126
+ +L D+ GVL N R ++ F ++G + E F G A
Sbjct: 27 GIKNLLIDLGGVLINL---DRERCIENFKKIGFQNIEEKFCTHQLDGIFLQQEKGLITPA 83
Query: 127 NFLGGVASVKGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAV 186
F G+ + + K+ + + P + + V +
Sbjct: 84 EFRDGIR-----EMMGKMVSDKQIDAAWNSFL------VDIPTYKLDLLLKLREKYVVYL 132
Query: 187 ASSADRIKVD----ANLAAAGLPV-SMFDAIVSADAFENLKPAPDIFLSASKILNVPTSE 241
S+ + I V F+ + + KP P+IF + ++ + E
Sbjct: 133 LSNTNDIHWKWVCKNAFPYRTFKVEDYFEKTYLSYEMKMAKPEPEIFKAVTEDAGIDPKE 192
Query: 242 CIVIEDALAGVQAAKAAQMRCIAVT 266
I+D+ + A+ +
Sbjct: 193 TFFIDDSEINCKVAQELGISTYTPK 217
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Length = 144 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 1e-12
Identities = 24/115 (20%), Positives = 36/115 (31%), Gaps = 9/115 (7%)
Query: 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD-MPFTVVGVHSAKFDNEKDLEAIRN 508
L GK V F C P L K + + F V+ + ++ E ++
Sbjct: 25 SLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLI-----SWDESAEDFKD 79
Query: 509 AVLRYGISHPVVND--GDMNLWRELGVNSWPTFAVVGPN-GKLLAQLAGEGHRKD 560
+ D G L V S PT V + G ++ A KD
Sbjct: 80 YYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKD 134
|
| >3smv_A S-(-)-azetidine-2-carboxylate hydrolase; haloacid dehalogenase superfamily, L-azetidine-2- carboxylate; HET: GOL; 1.38A {Pseudomonas} Length = 240 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 3e-12
Identities = 40/206 (19%), Positives = 70/206 (33%), Gaps = 33/206 (16%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFM---------GTGEANF 128
A+ FD G L + E A + G T ++ L T A +
Sbjct: 5 DFKALTFDCYGTLIDWETGIVNALQPLAKRTGKTFTSDELLEVFGRNESPQQTETPGALY 64
Query: 129 -------LGGVASVKGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKG 181
+A G++ A ++ F + A FP +E + K K
Sbjct: 65 QDILRAVYDRIAKEWGLE--PDAAEREEFGTSVKNWPA-------FPDTVEALQYLK-KH 114
Query: 182 LKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKIL---NVP 238
K+ + S+ DR + + A G+ FD I++A + KP P+ F L +
Sbjct: 115 YKLVILSNIDRNEFKLSNAKLGVE---FDHIITAQDVGSYKPNPNNFTYMIDALAKAGIE 171
Query: 239 TSECIVIEDALAG-VQAAKAAQMRCI 263
+ + ++L A A +
Sbjct: 172 KKDILHTAESLYHDHIPANDAGLVSA 197
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Length = 391 | Back alignment and structure |
|---|
Score = 68.3 bits (167), Expect = 5e-12
Identities = 47/262 (17%), Positives = 90/262 (34%), Gaps = 73/262 (27%)
Query: 612 NNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLL 671
+ +I++S + I V D+ N + G + P G + +
Sbjct: 1 STFAYIANSESDNISVIDVTSNKVTATIPVG--------------SNPMGAVISPDGTKV 46
Query: 672 YVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVY 731
YVA+ ++ + ID + V T +SP V P ++VY
Sbjct: 47 YVANAHSNDVSIIDTATNNV-----------------IATVPAGSSPQGVAVSPDGKQVY 89
Query: 732 IAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVAD 791
+ + S +D + +G ++ T P G++LSPD ++YV +
Sbjct: 90 VTNMASSTL---SVIDTTSNTVAG-----------TVKTG-KSPLGLALSPDGKKLYVTN 134
Query: 792 SESSSIRALNLKTGG--SRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ 849
+ ++ +N T + + G P G+ +G
Sbjct: 135 NGDKTVSVINTVTKAVINTVSVGR------------------------SPKGIAVTPDGT 170
Query: 850 -IYVADSYNHKIKKLDPASNRV 870
+YVA+ + I +D +N V
Sbjct: 171 KVYVANFDSMSISVIDTVTNSV 192
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Length = 391 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 53/283 (18%), Positives = 101/283 (35%), Gaps = 73/283 (25%)
Query: 601 KFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQ 660
P +A+ ++++++ + + V D N + +G+ P
Sbjct: 74 SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS--------------PL 119
Query: 661 GLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWD 720
GLA + LYV + + + I+ V V T + SP
Sbjct: 120 GLALSPDGKKLYVTNNGDKTVSVINTVTKAV-----------------INTVSVGRSPKG 162
Query: 721 VCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISL 780
+ P KVY+A I S +D VT + ++ A PSGI++
Sbjct: 163 IAVTPDGTKVYVANFDSMSI---SVIDTVTNSVID-----------TVKVE-AAPSGIAV 207
Query: 781 SPDFMEIYVA--DSESSSIRALNLKTG--GSRLLAGGDPIFPDNLFKFGDRDGMGSEVLL 836
+P+ + YV D +++ ++ T +R+ G DP G+
Sbjct: 208 NPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDP------------AGI------ 249
Query: 837 QHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKA 879
++YVA S+ + + +D A+N ++ +GK
Sbjct: 250 -----AVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKN 287
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Length = 391 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 28/153 (18%), Positives = 59/153 (38%), Gaps = 42/153 (27%)
Query: 773 AQPSGISLSPDFMEIYVADSESSSIRALNLKTG--GSRLLAGGDPIFPDNLFKFGDRDGM 830
+ P G +SPD ++YVA++ S+ + ++ T + + AG
Sbjct: 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS---------------- 75
Query: 831 GSEVLLQHPLGVYCAKNGQ-IYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAA 889
P GV + +G+ +YV + + + +D SN V+ GK
Sbjct: 76 --------PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK----------- 116
Query: 890 QLSEPAGIIEAQNGN-LFIADTNNNIIRYLDLN 921
P G+ + +G L++ + + + ++
Sbjct: 117 ---SPLGLALSPDGKKLYVTNNGDKTVSVINTV 146
|
| >2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A* Length = 240 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 1e-11
Identities = 41/214 (19%), Positives = 75/214 (35%), Gaps = 26/214 (12%)
Query: 67 DVNVSSESKWGKVSAVLFDMDGVLCNSEEPSRRAA------VDVFAEMGVEVTVE----- 115
D + + A +FD G L + R A + + + + +E
Sbjct: 2 DYKDDDDKLVDSLRACVFDAYGTLLDVHSAVMRNADEVGASAEALSMLWRQRQLEYSWTR 61
Query: 116 ----DFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGAL 171
+ F + +++ D + K R Y + A +P A
Sbjct: 62 TLMHQYADFWQLTDEAL---TFALRTYHLEDRKGLKDRLMSAYKELSA-------YPDAA 111
Query: 172 ELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSA 231
E + + KS G VA+ S+ + + A L A+ L + D+ +SAD + KP P I+ A
Sbjct: 112 ETLEKLKSAGYIVAILSNGNDEMLQAALKASKLD-RVLDSCLSADDLKIYKPDPRIYQFA 170
Query: 232 SKILNVPTSECIVIEDALAGVQAAKAAQMRCIAV 265
L V +E + + A + +
Sbjct: 171 CDRLGVNPNEVCFVSSNAWDLGGAGKFGFNTVRI 204
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Length = 331 | Back alignment and structure |
|---|
Score = 66.0 bits (161), Expect = 2e-11
Identities = 40/360 (11%), Positives = 98/360 (27%), Gaps = 75/360 (20%)
Query: 612 NNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLL 671
+N + + + RI D I+ + G A + + +
Sbjct: 9 SNFGIVVEQHLRRISFFSTDTLEILNQITLG--------------YDFVDTAITSDCSNV 54
Query: 672 YVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVY 731
V L +I+ + + +A + +S DV P ++
Sbjct: 55 VVTSDFCQTLVQIETQLEPPKVVA---------------IQEGQSSMADVDITPDDQFAV 99
Query: 732 IAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVAD 791
H + + + + GI++SP+ + + D
Sbjct: 100 TVTGLNHPF----NMQSY------SFLKNKFISTIPIPYD---AVGIAISPNGNGLILID 146
Query: 792 SESS-SIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ- 849
S+ ++R + G G + I P + +G
Sbjct: 147 RSSANTVRRFKIDADGVLFDTGQEFISGGT-----------------RPFNITFTPDGNF 189
Query: 850 IYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIA 908
+VA+ + I L+ + TL + P I+ +++G+ +++
Sbjct: 190 AFVANLIGNSIGILETQNPENITLLNAVGTN-----------NLPGTIVVSRDGSTVYVL 238
Query: 909 DTNNNIIRYLDLNKEEPELQTLELKGVQPPTPKSRSPKRLRRRSSPDAQTIVVDGGLSNE 968
+ + + G+ ++ + + + +S E
Sbjct: 239 TESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQM--ALNKTETKLFISANISRE 296
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Length = 331 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 9e-10
Identities = 31/321 (9%), Positives = 75/321 (23%), Gaps = 61/321 (19%)
Query: 603 PGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGL 662
AI + + ++ +V + + + +
Sbjct: 42 FVDTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ------------EGQSSMADV 89
Query: 663 AYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVC 722
NH + + +
Sbjct: 90 DITPDDQFAVTVTGLNHPFN-MQSYSFLKNKFISTIPIP--------------YDAVGIA 134
Query: 723 YKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSP 782
P + + + R F D + + +P I+ +P
Sbjct: 135 ISPNGNGLILID---------RSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTP 185
Query: 783 DFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGV 842
D +VA+ +SI L + + + G + P +
Sbjct: 186 DGNFAFVANLIGNSIGILETQNPEN--------------ITLLNAVGTNN-----LPGTI 226
Query: 843 YCAKNGQ-IYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQ 901
+++G +YV + + S +S + G D L + +
Sbjct: 227 VVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFG----ANQMALNK 282
Query: 902 NGN-LFIADTNNNIIRYLDLN 921
LFI+ + ++ ++
Sbjct: 283 TETKLFISANISRELKVFTIS 303
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Length = 331 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 34/278 (12%), Positives = 80/278 (28%), Gaps = 56/278 (20%)
Query: 603 PGKLAIDILNNRLFIS--DSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQ 660
+ I + ++ + N + +
Sbjct: 86 MADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYD--------------AV 131
Query: 661 GLAYNAKKNLLYVADTE-NHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPW 719
G+A + N L + D + +R D V G P+
Sbjct: 132 GIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGG------------TRPF 179
Query: 720 DVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGIS 779
++ + P ++A + I ++ N+ +++ T+ P I
Sbjct: 180 NITFTPDGNFAFVANLIGNSI---GILETQNP--------ENITLLNAVGTN-NLPGTIV 227
Query: 780 LSPDFMEIYVADSESSSIRALNLKTGG-SRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQH 838
+S D +YV + + N +G S + + G + D L
Sbjct: 228 VSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLID-------------PRPLFG 274
Query: 839 PLGVYCAKNG-QIYVADSYNHKIKKLDPASNRVSTLAG 875
+ K +++++ + + ++K + V +AG
Sbjct: 275 ANQMALNKTETKLFISANISRELKVFTISGKVVGYVAG 312
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Length = 331 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 33/273 (12%), Positives = 79/273 (28%), Gaps = 51/273 (18%)
Query: 773 AQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLA----GGDP----IFPD----- 819
+++ D + V ++ + + +++A I PD
Sbjct: 40 YDFVDTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAV 99
Query: 820 ------NLFKFGDRDGMGSEVLLQ-----HPLGVYCAKNGQ-IYVADSY-NHKIKKLDPA 866
+ F + ++ + +G+ + NG + + D + +++
Sbjct: 100 TVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKID 159
Query: 867 SNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADTNNNIIRYLDLNKEEP 925
++ V L G+ G P I +GN F+A+ N I L+
Sbjct: 160 ADGV--LFDTGQEFISGGTR-------PFNITFTPDGNFAFVANLIGNSIGILETQ---- 206
Query: 926 ELQTLELKGVQPPTPKSRSPKRLRRRSSPDAQTIVVDGGLSNEGNIYLKISLPEEYHFSK 985
E + + P + S D T+ V E + + + +
Sbjct: 207 ---NPENITLLNAVGTNNLPGTI--VVSRDGSTVYV----LTESTV--DVFNFNQLSGTL 255
Query: 986 EARSKFSVDVEPENAVIIDPLDGNLSPEGSAVL 1018
F + + + L+ + +
Sbjct: 256 SFVKSFGHGLLIDPRPLFGANQMALNKTETKLF 288
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Length = 331 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 13/96 (13%), Positives = 32/96 (33%), Gaps = 4/96 (4%)
Query: 601 KFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQ 660
PG + + + +++ + + + + + S G L D
Sbjct: 221 NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLID----PRPLFGAN 276
Query: 661 GLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAG 696
+A N + L+++ + L+ V +AG
Sbjct: 277 QMALNKTETKLFISANISRELKVFTISGKVVGYVAG 312
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 Length = 144 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 2e-11
Identities = 25/121 (20%), Positives = 44/121 (36%), Gaps = 18/121 (14%)
Query: 450 DLKGKVVVLDFW-TYC--CINCMHVLPDL-EFLEKKYKDMPFTVVGVHSAKFDNEKDLEA 505
L GK V L F ++C C P L EF EK + F VV + +++
Sbjct: 25 SLVGKTVFLYFSASWCPPCRGFT---PVLAEFYEKHHVAKNFEVVLISW-----DENESD 76
Query: 506 IRNAVLRYGISHPVVNDGDMN--LWRELGVNSWPTFAVVGPN-GKLLAQLAGEGHRKDLD 562
+ + + L + GV S PT + + G ++ + + ++
Sbjct: 77 FHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGT---QARTRVIE 133
Query: 563 D 563
D
Sbjct: 134 D 134
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 67.6 bits (164), Expect = 2e-11
Identities = 90/557 (16%), Positives = 164/557 (29%), Gaps = 183/557 (32%)
Query: 160 KPNSGI---GFPG------ALELIN----QCKSKG----LKVAVASSADRI--------- 193
+P + G G AL++ QCK L + +S + +
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 194 KVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQ 253
++D N + + + +++ L + N C+++ + +
Sbjct: 208 QIDPNWTS--RSDHSSNIKLR---IHSIQAELRRLLKSKPYEN-----CLLVLLNVQNAK 257
Query: 254 AAKAAQMRC-IAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTGGGGSYNEKIQEHELL 312
A A + C I +TT R K+ + L +SL+ + E+
Sbjct: 258 AWNAFNLSCKILLTT-----RFKQVTDFLSAATTTHISLDHHSMT--------LTPDEVK 304
Query: 313 HAASQNSTALLKEKTDNWSILDTGAADEKGSSTSGLQGSRREILRYGSLGVAFSCLFFA- 371
+ LLK LD D RE+L ++ +
Sbjct: 305 -------SLLLK-------YLDCRPQDL-----------PREVLTTNPRRLS---IIAES 336
Query: 372 VSNWKAMQYASPKAIWNVLFGVNRPSFEQTEGGSSQSERIQQFVNYISDVENRKTTPIVP 431
+ + A W+ VN I+ +N + E RK
Sbjct: 337 IRDGLAT--------WDNWKHVNCDKLTTI---------IESSLNVLEPAEYRK------ 373
Query: 432 EFPAKLDWLNTAPLQFRRDLKGKVVVLD-FW----TYCCINCMHVLPDLEFLEKKYKDMP 486
D L+ F ++L W + ++ L +EK+ K+
Sbjct: 374 ----MFDRLSV----FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 487 FTVVGVH---SAKFDNEKDLEAIRNAVLRYGIS--------HPVVNDG------------ 523
++ ++ K +NE L R+ V Y I P D
Sbjct: 426 ISIPSIYLELKVKLENEYALH--RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 524 -----DMNLWRELGVNSWPTFAVVGPNGKL-LAQLAGEGHRKDLDDLVEAALLFYGKKKL 577
M L+R + ++ F + K+ A L+ L + L FY K +
Sbjct: 484 IEHPERMTLFRMVFLD----FRFLE--QKIRHDSTAWNASGSILNTLQQ--LKFY-KPYI 534
Query: 578 LDNTPLPLSLEKDNDPRLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQ 637
DN P L IL+ F+ N I D +++
Sbjct: 535 CDNDPKYERLVN-------------------AILD---FLPKIEENLICSKYTD---LLR 569
Query: 638 IGSSGEEGLRDGSFDDA 654
I E+ + F++A
Sbjct: 570 IALMAED---EAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 7e-07
Identities = 83/586 (14%), Positives = 161/586 (27%), Gaps = 167/586 (28%)
Query: 458 LDFWT----YCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRY 513
+DF T Y + + V F + + FD + + ++ + +
Sbjct: 7 MDFETGEHQYQYKDILSV-----FEDAFVDN------------FDCKDVQDMPKSILSKE 49
Query: 514 GISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGK-LLAQLAGEGHRKDLDDLVEAALLFY 572
I H +++ ++ L F + + ++ + E R + L+ +
Sbjct: 50 EIDHIIMSKDAVSGTLRL-------FWTLLSKQEEMVQKFVEEVLRINYKFLMSP--IKT 100
Query: 573 GKKKLLDNTPLPLSLEKD---NDPRLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTD 629
+++ T + + ++D ND ++F + L L +++
Sbjct: 101 EQRQPSMMTRMYIE-QRDRLYNDNQVF-AKYNVSRLQPYLKLRQALL-ELRPAKNVLI-- 155
Query: 630 LDGNFIVQIGSSGE-----EGLRDGS----FDDATF-------NRP-------QGLAYNA 666
DG + SG+ + D F N P Q L Y
Sbjct: 156 -DG-----VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 667 KKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQL-LNSPWDVCYKP 725
N +D ++ I + +R L K Y+ L L +V
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRL----LKSKPYE-----NCLLVLL---NVQ--- 254
Query: 726 INEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFM 785
N K + A +I + VT S ISL M
Sbjct: 255 -NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH-----------------ISLDHHSM 296
Query: 786 EIYVADSESSSIRALNLKTGGSRLLA-GGDP----IFPDNLFKFGDRDGMGSEVLLQHPL 840
+ + +S ++ L+ + +P I +++
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT------------- 343
Query: 841 GVYCAKNGQIYVADSYNHKIKK----LDPASNRV--STLAGIGKAGFKDGAALAAQL--- 891
N + D I+ L+PA R L+ + F A + L
Sbjct: 344 ----WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-V----FPPSAHIPTILLSL 394
Query: 892 -------SEPAGII-EAQNGNLFIADTNNNIIR----YLDLNKEEPELQTLELKGVQPPT 939
S+ ++ + +L + I YL+L + L V
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD--- 451
Query: 940 PKSRSPKRLRRRSSPDAQTIVVDGGLSNEGNIYLKISLPEEYHFSK 985
+ S D +D Y I +H
Sbjct: 452 ----HYNIPKTFDSDDLIPPYLD------QYFYSHIG----HHLKN 483
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 3e-05
Identities = 53/398 (13%), Positives = 95/398 (23%), Gaps = 143/398 (35%)
Query: 675 DTE----NHALREI--DFVNDTVRTLAGNGTKGSDYQGG---EKGTSQLLNSPWDVCYKP 725
D E + ++I F + V D ++ ++ S V
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDV--QDMPKSILSKEEIDHIIMSKDAV---- 61
Query: 726 INEKVYIAMAGQHQIW--EHSTVDGVTRAFSGDGYERNLNG-SSSLNTSFAQPSGISLSP 782
W + V + F + N S + T QPS +
Sbjct: 62 --SGTLRL------FWTLLSKQEEMVQK-FVEEVLRINYKFLMSPIKTEQRQPSMM---- 108
Query: 783 DFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGV 842
+Y+ + RL N V P
Sbjct: 109 --TRMYIEQRD--------------RLYNDNQVFAKYN-------------VSRLQPY-- 137
Query: 843 YCAKNGQIYVADSYNHKIKKLDPASN-RVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQ 901
+ +L PA N + + G GK +A + +
Sbjct: 138 -----------LKLRQALLELRPAKNVLIDGVLGSGKT------WVALDVCLSYKVQCKM 180
Query: 902 NGNLFIADTNNNIIRYLDL-NKEEPE-----LQTLELKGVQPPTPKSRSPK--------- 946
+ +F +L+L N PE LQ L + T +S
Sbjct: 181 DFKIF----------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 947 --RLRR----RSSPDA--------------------QTIVV--DGGLSN--EGNIYLKIS 976
LRR + + + ++ +++ IS
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 977 LPEEYH-FSK-EARSKFS--VDVE----PENAVIIDPL 1006
L + E +S +D P + +P
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} Length = 143 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 2e-11
Identities = 16/104 (15%), Positives = 40/104 (38%), Gaps = 10/104 (9%)
Query: 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD--MPFTVVGVHSAKFDNEKDLEAIRNA 509
++ F + C C P L + + D PF ++ V +++ + +
Sbjct: 25 DKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFV-----SSDRSEDDMFQY 79
Query: 510 VLRYG---ISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLA 550
++ ++ P + N+ + G+ P +V +G L++
Sbjct: 80 MMESHGDWLAIPYRSGPASNVTAKYGITGIPALVIVKKDGTLIS 123
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} Length = 165 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 4e-11
Identities = 22/117 (18%), Positives = 36/117 (30%), Gaps = 10/117 (8%)
Query: 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD-MPFTVVGVHSAKFDNEKDLEAIRN 508
L GK V F C C P L +K+ D F ++ + + +
Sbjct: 45 SLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDE-EEDDFNAYYAK 103
Query: 509 AVLRYGISHPVVNDGDMN-LWRELGVNSWPTFAVVGPN-GKLLAQLAGEGHRKDLDD 563
+S P N + L ++ V S PT + + G + D
Sbjct: 104 M---PWLSIPFANRNIVEALTKKYSVESIPTLIGLNADTGDTVTT---RARHALTQD 154
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Length = 322 | Back alignment and structure |
|---|
Score = 63.6 bits (154), Expect = 8e-11
Identities = 53/353 (15%), Positives = 98/353 (27%), Gaps = 61/353 (17%)
Query: 594 RLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIV---QIGSSGEEGLRDGS 650
L +P P D N + S + R++ + + V + + S
Sbjct: 12 ILIEAPSYAPNSFTFDSTNKGFYTSVQD-GRVIKYEGPNSGFVDFAYASPYWNKAFCENS 70
Query: 651 FDDATFN---RPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGG 707
D R ++YN + N LY+ D + L + LA G
Sbjct: 71 TDAEKRPLCGRTYDISYNLQNNQLYIVD-CYYHLSVVGSEGGHATQLA-------TSVDG 122
Query: 708 EKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSS 767
+ V VY T +G + + + +
Sbjct: 123 VP-----FKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177
Query: 768 --LNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFG 825
L P G +S D + VA+ S I L+ G +
Sbjct: 178 TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPK----KGTAEVLVK------ 227
Query: 826 DRDGMGSEVLLQHPLGVYCAKNGQIYVADSY---NHKIKKLDPASNRVSTLAGIGKAGFK 882
+ +P + +G +V+ S + ++DP + +
Sbjct: 228 ----------IPNPGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFD----------E 267
Query: 883 DGAALAA-QLSEPAGI-----IEAQNGNLFIADTNNNIIRYLDLNKEEPELQT 929
G L L P I+ +G L+I + + L +K+ +
Sbjct: 268 FGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYDKKGNSFVS 320
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Length = 146 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 2e-10
Identities = 21/128 (16%), Positives = 36/128 (28%), Gaps = 10/128 (7%)
Query: 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKY-KDMPFTVVGVHSAKFDNEKDLEAIRN 508
L GK+V F C P L K+ + F VV + + +
Sbjct: 25 SLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFC-TWDEEEDGFAGYFAK 83
Query: 509 AVLRYGISHPVVNDGDMN-LWRELGVNSWPTFAVVGPN-GKLLAQLAGEGHRKDLDDLVE 566
++ P + L + V S PT V + G ++ + D
Sbjct: 84 M---PWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTT---RARATLVKDPEG 137
Query: 567 AALLFYGK 574
+
Sbjct: 138 EQFPWKDA 145
|
| >1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A* 1aq6_A Length = 253 | Back alignment and structure |
|---|
Score = 60.7 bits (147), Expect = 4e-10
Identities = 40/200 (20%), Positives = 68/200 (34%), Gaps = 24/200 (12%)
Query: 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGG------- 131
+ AV+FD G L + + A + G +T + L G
Sbjct: 2 IKAVVFDAYGTLFDVQ-SVADATERAYPGRGEYITQVWRQKQLEYSWLRALMGRYADFWS 60
Query: 132 ------VASVKGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVA 185
++ + E+ + Y +P A + + + K A
Sbjct: 61 VTREALAYTLGTLGLEPDESFLADMAQAYNRLTP-------YPDAAQCLAELAPL--KRA 111
Query: 186 VASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVI 245
+ S+ + A +A AGL FDA++S DA KP PD + ++L V +E + +
Sbjct: 112 ILSNGAPDMLQALVANAGLT-DSFDAVISVDAKRVFKPHPDSYALVEEVLGVTPAEVLFV 170
Query: 246 EDALAGVQAAKAAQMRCIAV 265
V AK V
Sbjct: 171 SSNGFDVGGAKNFGFSVARV 190
|
| >1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A Length = 261 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 2e-09
Identities = 26/225 (11%), Positives = 66/225 (29%), Gaps = 38/225 (16%)
Query: 77 GKVSAVLFDMDGVLC-----------------------NSEEPSRRAAV-DVFAEMGVEV 112
+V+ +L D++G + EE + V + + +
Sbjct: 8 AEVTVILLDIEGTTTPIAFVKDILFPYIEENVKEYLQTHWEEEECQQDVSLLRKQAEEDA 67
Query: 113 TVEDFLPF-------MGTGEANFLGGVASVKGVKGFDSEAAKKRFFE--IYLDKYAKPNS 163
++ +P + + V +V D + + + ++ +
Sbjct: 68 HLDGAVPIPAASGNGVDDLQQMIQAVVDNVCWQMSLDRKTTALKQLQGHMWRAAFTAGRM 127
Query: 164 GIG-FPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLP--VSMFDAIVSADAFEN 220
F + + + + G+KV + SS + + + D D
Sbjct: 128 KAEFFADVVPAVRKWREAGMKVYIYSSGSVEAQKLLFGHSTEGDILELVDGHF--DTKIG 185
Query: 221 LKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAV 265
K + + + + T+ + + D AA+ A + V
Sbjct: 186 HKVESESYRKIADSIGCSTNNILFLTDVTREASAAEEADVHVAVV 230
|
| >2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST genomics, joint center for structural genomics, JCSG; 1.81A {Xanthomonas campestris PV} Length = 251 | Back alignment and structure |
|---|
Score = 58.1 bits (140), Expect = 3e-09
Identities = 33/204 (16%), Positives = 62/204 (30%), Gaps = 25/204 (12%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDV------FAEMGVEVTVEDFLPF-------MGTG 124
+ V FD D L SE+ R A D + ++G + L G G
Sbjct: 12 AIQLVGFDGDDTLWKSEDYYRTAEADFEAILSGYLDLGDSRMQQHLLAVERRNLKIFGYG 71
Query: 125 EANFLG--GVASVKGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGL 182
+++ + +R EI P G E + +
Sbjct: 72 AKGMTLSMIETAIELTEARIEARDIQRIVEIGRATLQHPVEV--IAGVREAVAAIAADY- 128
Query: 183 KVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSEC 242
V + + D + + +GL +F I + P + ++P
Sbjct: 129 AVVLITKGDLFHQEQKIEQSGL-SDLFPRIEVVS-----EKDPQTYARVLSEFDLPAERF 182
Query: 243 IVIEDAL-AGVQAAKAAQMRCIAV 265
++I ++L + V+ A I
Sbjct: 183 VMIGNSLRSDVEPVLAIGGWGIYT 206
|
| >3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron} Length = 234 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 1e-08
Identities = 33/206 (16%), Positives = 63/206 (30%), Gaps = 33/206 (16%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRA---AVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVAS 134
+ + FD D L ++E + D+ G + L +
Sbjct: 7 LIKVIAFDADDTLWSNEPFFQEVEKQYTDLLKPYGTSKEISAALF-----QTEMNNLQIL 61
Query: 135 VKGVKGFD---------------SEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKS 179
G K F + ++ ++ P PG E + K
Sbjct: 62 GYGAKAFTISMVETALQISNGKIAADIIRQIVDLGKSLLKMPIE--LLPGVKETLKTLKE 119
Query: 180 KGL-KVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVP 238
G K+ VA+ D + + L +GL FD I +L IL +
Sbjct: 120 TGKYKLVVATKGDLLDQENKLERSGL-SPYFDHIEVMS-----DKTEKEYLRLLSILQIA 173
Query: 239 TSECIVIEDAL-AGVQAAKAAQMRCI 263
SE +++ ++ + +Q + +
Sbjct: 174 PSELLMVGNSFKSDIQPVLSLGGYGV 199
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386 | Back alignment and structure |
|---|
Score = 57.5 bits (138), Expect = 1e-08
Identities = 44/221 (19%), Positives = 82/221 (37%), Gaps = 50/221 (22%)
Query: 591 NDPRLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGS 650
N + ++ L+ PG LA+D ++++L+ +DS +RI V +LDG +
Sbjct: 149 NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQS-------- 200
Query: 651 FDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVN---DTVRTLAGNGTKGSDYQGG 707
+P+ +A + + +Y D N I+ + R +A
Sbjct: 201 -----LEKPRAIALHPMEGTIYWTDWGNTP--RIEASSMDGSGRRIIADTH--------- 244
Query: 708 EKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSS 767
L P + ++Y A H I E + +DG R +
Sbjct: 245 -------LFWPNGLTIDYAGRRMYWVDAKHHVI-ERANLDGSHR-------------KAV 283
Query: 768 LNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR 808
++ P I++ D +Y D + SI + N TG ++
Sbjct: 284 ISQGLPHPFAITVFEDS--LYWTDWHTKSINSANKFTGKNQ 322
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 9e-06
Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 15/100 (15%)
Query: 595 LFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDA 654
+ + L +P L ID R++ D+ H+ I +LDG+ + S
Sbjct: 240 IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ------------- 286
Query: 655 TFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTL 694
P + ++ LY D ++ + + +
Sbjct: 287 GLPHPFAITVF--EDSLYWTDWHTKSINSANKFTGKNQEI 324
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386 | Back alignment and structure |
|---|
Score = 46.7 bits (110), Expect = 3e-05
Identities = 49/310 (15%), Positives = 91/310 (29%), Gaps = 64/310 (20%)
Query: 555 EGHRKDLDDLVEAALLFYGKKKLLDNTPLPLSLEKDNDPRLFTSPLKFPGKLAIDILNNR 614
G+ D AL + + L ++ L + L+ L
Sbjct: 70 AGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRREL 129
Query: 615 LFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVA 674
+F SD +RI+ +L+G+ + ++ S+G P GLA + + LY
Sbjct: 130 VFWSDVTLDRILRANLNGSNVEEVVSTG-------------LESPGGLAVDWVHDKLYWT 176
Query: 675 DTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAM 734
D+ + + + L L P + P+ +Y
Sbjct: 177 DSGTSRIEVANLDGAHRKVLLWQS----------------LEKPRAIALHPMEGTIYWTD 220
Query: 735 AGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSES 794
G E S++DG R +T P+G+++ +Y D++
Sbjct: 221 WGNTPRIEASSMDGSGR-------------RIIADTHLFWPNGLTIDYAGRRMYWVDAKH 267
Query: 795 SSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVAD 854
I NL + + L HP + +Y D
Sbjct: 268 HVIERANLDGSHRKAVISQG---------------------LPHPFAI-TVFEDSLYWTD 305
Query: 855 SYNHKIKKLD 864
+ I +
Sbjct: 306 WHTKSINSAN 315
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} Length = 343 | Back alignment and structure |
|---|
Score = 56.7 bits (136), Expect = 2e-08
Identities = 51/343 (14%), Positives = 105/343 (30%), Gaps = 67/343 (19%)
Query: 603 PGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDAT-FNRPQG 661
PG + + + RLF+S + + + ++ G S + F+ G
Sbjct: 19 PGNITLT-PDGRLFLSLHQFYQPEMQ------VAELTQDGLIPFPPQSGNAIITFDTVLG 71
Query: 662 LAYNAKKNLLYVADTENHA-----LREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLN 716
+ + ++++ D N + L D +N+ + ++ ++ +N
Sbjct: 72 IKSDGN-GIVWMLDNGNQSKSVPKLVAWDTLNNQL-------SRVIYLPPPITLSNSFVN 123
Query: 717 SPWDVCYKPINEKVYIAMAGQHQIWEHSTVD----GVTRAFSGDGYERNLNGSSSLNT-- 770
D+ I+ VYI+ VD R G + ++
Sbjct: 124 ---DLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVP 180
Query: 771 -SFAQPSG-----------ISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFP 818
QP G I L + +Y++ S+S+ + + L D
Sbjct: 181 VQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK--SADLSNLQLTDAELG 238
Query: 819 DNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGK 878
+ ++ ++ G+ K+ IYV D + I + A L K
Sbjct: 239 SKIERYSEKPICD---------GISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEK 289
Query: 879 AGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLN 921
+ D + +G L+ N + LN
Sbjct: 290 LSWTDSFNFGS------------DGYLYF--DCNQLHHSAPLN 318
|
| >3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the 6-AU sensitivity of transcription elongation II; 1.70A {Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A* Length = 282 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 2e-08
Identities = 31/228 (13%), Positives = 61/228 (26%), Gaps = 21/228 (9%)
Query: 65 ETDVNVSSESKWGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVT--VEDFLPFMG 122
D ++S+ + + FD+D L S + M + + L +
Sbjct: 43 PIDQDISATPQNPNLKVFFFDIDNCLYKSST-------RIHDLMQQSILRFFQTHLK-LS 94
Query: 123 TGEANFLG-------GVASVKGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELIN 175
+A+ L G+A V A + + L
Sbjct: 95 PEDAHVLNNSYYKEYGLAIRGLVMFHKVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRL 154
Query: 176 QCKSKGLKVAVASSADRIKVDANLAAAGLPVSM---FDAIVSADAFENLKPAPDIFLSAS 232
+ K K+ + ++A + L G+ S KP F A
Sbjct: 155 RQSGKIDKLWLFTNAYKNHAIRCLRLLGIADLFDGLTYCDYSRTDTLVCKPHVKAFEKAM 214
Query: 233 KILNV-PTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASP 279
K + I+D+ ++ M+ + +P
Sbjct: 215 KESGLARYENAYFIDDSGKNIETGIKLGMKTCIHLVENEVNEILGQTP 262
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Length = 353 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 3e-08
Identities = 33/271 (12%), Positives = 75/271 (27%), Gaps = 58/271 (21%)
Query: 603 PGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGL 662
P I+ L+ ++ ++ + D + + ++ +P+ L
Sbjct: 91 PFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDD----RKRTEEVRPLQPREL 146
Query: 663 AYNAKKNLLYVADTENHA-LREIDFVNDTV-RTLAGNGTKGSDYQGGEKGTSQLLNSPWD 720
+ N +Y++ + + +D N + + G
Sbjct: 147 VADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTG-----------------KMSTG 189
Query: 721 VCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISL 780
+ +++Y A I T+D + ISL
Sbjct: 190 LALDSEGKRLYTTNADGELI----TIDTADNKILS-------RKKLLDDGKEHFFINISL 238
Query: 781 SPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPL 840
++ DS+++ + ++ + G +LA +V L
Sbjct: 239 DTARQRAFITDSKAAEVLVVDTRNG--NILA---------------------KVAAPESL 275
Query: 841 GVYCAKNGQ-IYVADSYNHKIKKLDPASNRV 870
V YV K+ +D S +V
Sbjct: 276 AVLFNPARNEAYVTHRQAGKVSVIDAKSYKV 306
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Length = 353 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 27/188 (14%), Positives = 62/188 (32%), Gaps = 35/188 (18%)
Query: 619 DSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTEN 678
DS R+ T+ DG I + + R DD + ++ + + ++ D++
Sbjct: 193 DSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKA 252
Query: 679 HALREIDFVNDTV-RTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ 737
+ +D N + +A V + P + Y+
Sbjct: 253 AEVLVVDTRNGNILAKVAAPE-------------------SLAVLFNPARNEAYVTHRQA 293
Query: 738 HQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSI 797
++ S +D + + +T P+ ++LS D +YV+ + S+
Sbjct: 294 GKV---SVIDAKSYKVVK-----------TFDT-PTHPNSLALSADGKTLYVSVKQKSTK 338
Query: 798 RALNLKTG 805
+ +
Sbjct: 339 QQEATQPD 346
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Length = 353 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 31/261 (11%), Positives = 79/261 (30%), Gaps = 55/261 (21%)
Query: 716 NSPWDVCYKPINEKVYIAMAGQHQIWEHSTV---DGVTRAFSGDGYERNLNGSSSLNTSF 772
+++ Y +++A + ++ + V D VT + +++
Sbjct: 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQ-----------AIHND- 88
Query: 773 AQPSGISLSPDFMEIYVADSESSSIRALNLKTG--GSRLLAGGDPIFPDNLFKFGDRDGM 830
+P G +++ ++ ++ +S++ A++ KTG RL+
Sbjct: 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRK--------------R 134
Query: 831 GSEVLLQHPLG-VYCAKNGQIYVADSYNHK-IKKLDPASNRVSTLAGIGKAGFKDGAALA 888
EV P V +Y++ I +D + ++ I G
Sbjct: 135 TEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKL--KTAIQNTG-------- 184
Query: 889 AQLSEPAGIIEAQNGN-LFIADTNNNIIRYLDLNKEEPELQTLELKGVQPPTPKSRSPKR 947
G+ G L+ + + +I +D ++ + +
Sbjct: 185 ---KMSTGLALDSEGKRLYTTNADGELIT-IDTA-------DNKILSRKKLLDDGKEHFF 233
Query: 948 LRRRSSPDAQTIVVDGGLSNE 968
+ Q + + E
Sbjct: 234 INISLDTARQRAFITDSKAAE 254
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 6e-08
Identities = 30/217 (13%), Positives = 73/217 (33%), Gaps = 48/217 (22%)
Query: 595 LFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDA 654
+ + ++ P LA+D +++ ++ +DS + V D G +
Sbjct: 153 VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN------------ 200
Query: 655 TFNRPQGLAYNAKKNLLYVADTENHALRE---IDFVNDTVRTLAGNGTKGSDYQGGEKGT 711
++P+ + + +Y D A + ++ V+ + +L
Sbjct: 201 -GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--IYSLVTEN------------- 244
Query: 712 SQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTS 771
+ P + ++ ++Y + H I V+G R + +
Sbjct: 245 ---IQWPNGITLDLLSGRLYWVDSKLHSI-SSIDVNGGNR--------KTILEDEK---R 289
Query: 772 FAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR 808
A P +++ D ++ D + +I + N TG
Sbjct: 290 LAHPFSLAVFEDK--VFWTDIINEAIFSANRLTGSDV 324
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 2e-06
Identities = 56/338 (16%), Positives = 104/338 (30%), Gaps = 80/338 (23%)
Query: 533 VNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFYGKKKLLDNTPLPLSLEKDND 592
VN + G L + H K + A LF+ + + L ++
Sbjct: 54 VNLEGGYKCQCEEGFQL-----DPHTKACKAVGSIAYLFFTNRHEVRKMTLD-----RSE 103
Query: 593 PRLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFD 652
L+ L ++ +NR++ SD + I T LD G S + +
Sbjct: 104 YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH----GVSSYDTVISRDIQ 159
Query: 653 DATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTS 712
P GLA + + +Y D+ + D +TL
Sbjct: 160 A-----PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN-------------- 200
Query: 713 QLLNSPWDVCYKPINEKVYIAMAGQH-QIWEHSTVDGVTRAFSGDGYERNLNGSSS---L 768
+ P + P++ +Y G +I + LNG +
Sbjct: 201 --GSKPRAIVVDPVHGFMYWTDWGTPAKIK---------KG--------GLNGVDIYSLV 241
Query: 769 NTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRD 828
+ P+GI+L +Y DS+ SI ++++ G + + +
Sbjct: 242 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK------------- 288
Query: 829 GMGSEVLLQHPLG--VYCAKNGQIYVADSYNHKIKKLD 864
L HP V+ +++ D N I +
Sbjct: 289 ------RLAHPFSLAVF---EDKVFWTDIINEAIFSAN 317
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 7e-06
Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 13/100 (13%)
Query: 595 LFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDA 654
L T +++P + +D+L+ RL+ DS + I D++G I +
Sbjct: 240 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED-----------EK 288
Query: 655 TFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTL 694
P LA ++ ++ D N A+ + + + L
Sbjct: 289 RLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNL 326
|
| >2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 7e-08
Identities = 16/119 (13%), Positives = 43/119 (36%), Gaps = 26/119 (21%)
Query: 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVL 511
+G ++ F T C C+ + +L ++ K+ + ++ A+ + EK+++
Sbjct: 25 EGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGK----FNIYYARLEEEKNIDLAY---- 76
Query: 512 RYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570
+Y N PT + G G + +++ ++ + +
Sbjct: 77 KYDA------------------NIVPTTVFLDKEGNKFYVHQGLMRKNNIETILNSLGV 117
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Length = 433 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 3e-07
Identities = 34/291 (11%), Positives = 85/291 (29%), Gaps = 75/291 (25%)
Query: 612 NNRLFISDSNHNRIVVTDLDG---NFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKK 668
+ R+ + + +++ D +G FI + T +P+ + +
Sbjct: 90 SYRIRKPEELNEKLIALDKEGITHRFISRF---------------KTGFQPKSVRFIDNT 134
Query: 669 NLLYVADTENHALREIDFVNDTV-RTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPIN 727
L + E+ + +D + R + + P +
Sbjct: 135 RL-AIPLLEDEGMDVLDINSGQTVRLSPP-------------EKYKKKLGFVETISIPEH 180
Query: 728 EKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEI 787
+++++ + + D T A+ +++ + + P +
Sbjct: 181 NELWVSQMQANAVHV---FDLKTLAYKA-----------TVDLTGKWSKILLYDPIRDLV 226
Query: 788 YVADSESSSIRALNLKTGG--SRLLAGGDP----IFPDN------LFKFGDRDGMGSEVL 835
Y ++ S I ++ KT + G P + D F +++ G +
Sbjct: 227 YCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLG 286
Query: 836 L---------------QHPLGVYCAKNGQ-IYVADSYNHKIKKLDPASNRV 870
+ + + IYV+D KI+ D +V
Sbjct: 287 IYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV 337
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Length = 433 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 3e-06
Identities = 27/208 (12%), Positives = 55/208 (26%), Gaps = 48/208 (23%)
Query: 603 PGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQ-IGSSGEEGLRDGSFDDATFNRPQG 661
+ +N L++S N + V DL + +G+ +
Sbjct: 171 FVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGK--------------WSKI 216
Query: 662 LAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDV 721
L Y+ ++L+Y ++ + + ID + + P +
Sbjct: 217 LLYDPIRDLVYCSNWISEDISVIDRKTKLE-----------------IRKTDKIGLPRGL 259
Query: 722 CYKPINEKVYIAMAGQHQIWEH----STVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSG 777
+++YIA + +
Sbjct: 260 LLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKL-----IDTIGPPGN-------KRH 307
Query: 778 ISLSPDFMEIYVADSESSSIRALNLKTG 805
I +IYV+D S I +LK
Sbjct: 308 IVSGNTENKIYVSDMCCSKIEVYDLKEK 335
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Length = 296 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 4e-07
Identities = 37/245 (15%), Positives = 75/245 (30%), Gaps = 48/245 (19%)
Query: 613 NRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLY 672
+ + SD NR DG ++ S G N + +L+
Sbjct: 40 SAVIFSDVRQNRTWAWSDDGQLSPEMHPSHH---------------QNGHCLNKQGHLI- 83
Query: 673 VADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYI 732
L ++A + ++G + LNSP DVC P + ++
Sbjct: 84 ACSHGLRRLERQREPGGEWESIADS------FEG------KKLNSPNDVCLAP-DGSLWF 130
Query: 733 AMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGS-SSLNTSFAQPSGISLSPDFMEIYVAD 791
+ G + +G+ S+ +P+G++ P + V+D
Sbjct: 131 SDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLPS-GNLLVSD 189
Query: 792 SESSSIRALNLKTGGS----RLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKN 847
+ ++ L G + +P D L + D G ++ +
Sbjct: 190 TGDNATHRYCLNARGETEYQGVHFTVEPGKTDGL-RV-DAGG-----------LIWASAG 236
Query: 848 GQIYV 852
++V
Sbjct: 237 DGVHV 241
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 1e-06
Identities = 37/300 (12%), Positives = 80/300 (26%), Gaps = 67/300 (22%)
Query: 612 NNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLL 671
+ +F+++ IV DGN + G + GLA+ + L
Sbjct: 42 DGTIFVTNHEVGEIVSITPDGNQQIHATVEG---------------KVSGLAFTS-NGDL 85
Query: 672 YVADTENHALREIDFVND--TVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEK 729
++ + V TV TL + + +
Sbjct: 86 VATGWNADSIPVVSLVKSDGTVETLLTLPD---------------AIFLNGITPLS-DTQ 129
Query: 730 VYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYV 789
A + + IW V + + S+ + F +G+ +F+ YV
Sbjct: 130 YLTADSYRGAIWLIDVVQPSGSIWLEHP----MLARSNSESVFPAANGLKRFGNFL--YV 183
Query: 790 ADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ 849
+++E + + + + G IF + + G
Sbjct: 184 SNTEKMLLLRIPVDSTDK---PGEPEIFVEQT----------------NIDDFAFDVEGN 224
Query: 850 IYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIAD 909
+Y A + + ++ P + A G E +++
Sbjct: 225 LYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAF--------GQTEGDCTAIYVVT 276
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 3e-04
Identities = 18/103 (17%), Positives = 38/103 (36%), Gaps = 20/103 (19%)
Query: 833 EVLLQHPLGVY-----CAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAAL 887
+++ P+ + A +G I+V + +I + P A +
Sbjct: 23 KIITSFPVNTFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVE---------- 71
Query: 888 AAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKEEPELQTL 930
+ +G+ NG+L N + I + L K + ++TL
Sbjct: 72 ----GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL 110
|
| >3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A* Length = 555 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 1e-06
Identities = 47/229 (20%), Positives = 74/229 (32%), Gaps = 44/229 (19%)
Query: 81 AVLFDMDGVLCNSEEPSRRAAVDVFAE-------------------------MGVEVTVE 115
A +FD+DGVL P+ + E M E+T+
Sbjct: 5 AAVFDLDGVLA---LPAVFGVLGRTEEALALPRGLLNDAFQKGGPEGATTRLMKGEITLS 61
Query: 116 DFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELIN 175
++P M A V K F K F+ + K N L+
Sbjct: 62 QWIPLM-EENCRKCSETAKVCLPKNFSI----KEIFDKAIS-ARKIN-----RPMLQAAL 110
Query: 176 QCKSKGLKVAVASSADRIKVDANLAAAGLPV---SMFDAIVSADAFENLKPAPDIFLSAS 232
+ KG A+ ++ A L FD ++ + +KP P I+
Sbjct: 111 MLRKKGFTTAILTNTWLDDRAERDGLAQLMCELKMHFDFLIESCQVGMVKPEPQIYKFLL 170
Query: 233 KILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSL 281
L SE + ++D A ++ A+ M I V T + LKE
Sbjct: 171 DTLKASPSEVVFLDDIGANLKPARDLGMVTILVQDT--DTALKELEKVT 217
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* Length = 355 | Back alignment and structure |
|---|
Score = 49.8 bits (118), Expect = 3e-06
Identities = 46/285 (16%), Positives = 91/285 (31%), Gaps = 34/285 (11%)
Query: 595 LFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDA 654
+S LK+PG ++ D +I++ DL+ + + E + + D +
Sbjct: 64 FISSGLKYPGIMSFD---------PDKSGKILLMDLNE----KEPAVSELEIIGNTLDIS 110
Query: 655 TFNRPQGLA----YNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKG 710
+FN P G++ + LL V + + E+ + ++L T
Sbjct: 111 SFN-PHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHK------- 162
Query: 711 TSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNT 770
LL S D+ E Y + + + N +
Sbjct: 163 ---LLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE 218
Query: 771 SFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGD--PIFPDNLFKFGDRD 828
F +GI++SPD +Y+A+ + I + DN+
Sbjct: 219 GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVT- 277
Query: 829 GMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTL 873
G + HP G+ S +I+ + +V+ +
Sbjct: 278 --GDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDILSEEPKVTVV 320
|
| >2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A Length = 187 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 3e-06
Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 5/111 (4%)
Query: 167 FPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPD 226
+P E++ + +S G+ A AS I + L +F V + + K
Sbjct: 70 YPEVPEVLKRLQSLGVPGAAASRTSEI--EGANQLLELF-DLFRYFVHREIYPGSKI--T 124
Query: 227 IFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEA 277
F + +P S+ I +D + + CI + ++ + L +
Sbjct: 125 HFERLQQKTGIPFSQMIFFDDERRNIVDVSKLGVTCIHIQNGMNLQTLSQG 175
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} Length = 255 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 6e-06
Identities = 33/250 (13%), Positives = 75/250 (30%), Gaps = 41/250 (16%)
Query: 606 LAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYN 665
L +N LF + + IV +G+ I I + + Y
Sbjct: 32 LTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDF-------------VKDLETIEY- 77
Query: 666 AKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKP 725
N ++D ++A+ I ++ + G + Y
Sbjct: 78 IGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCG-------FEGLAYSR 130
Query: 726 INEKVYIAMAGQ-HQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDF 784
+ + ++++ V+G+ + + + + + SG +
Sbjct: 131 QDHTFWFFKEKNPIEVYK---VNGLLSSNELHI---SKDKALQRQFTLDDVSGAEFNQQK 184
Query: 785 MEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYC 844
+ V ES +++ + L G+ I +L + G ++ GV
Sbjct: 185 NTLLVLSHESRALQEVTLV---------GEVIGEMSL----TKGSRGLSHNIKQAEGVAM 231
Query: 845 AKNGQIYVAD 854
+G IY+
Sbjct: 232 DASGNIYIVS 241
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} Length = 255 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 3e-05
Identities = 34/257 (13%), Positives = 83/257 (32%), Gaps = 38/257 (14%)
Query: 661 GLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWD 720
L ++A+ N L+ + A+ E+ D +RT+ + D +
Sbjct: 31 SLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFV--KDLET-------------- 74
Query: 721 VCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISL 780
+ Y + + I+ + I+ ++ + + L S + N F G++
Sbjct: 75 IEYIG-DNQFVISDERDYAIYVI-SLTPNSEVKILKKIKIPLQESPT-NCGF---EGLAY 128
Query: 781 SPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPL 840
S + E + I + G +F D G+E +
Sbjct: 129 SRQDHTFWFFK-EKNPIEVYKV-NGLLSSNELHISKDKALQRQFTLDDVSGAEF---NQ- 182
Query: 841 GVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEA 900
+ + V + ++++ + ++ + L+ + + G+
Sbjct: 183 -----QKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSR-----GLSHNIKQAEGVAMD 232
Query: 901 QNGNLFIADTNNNIIRY 917
+GN++I N R+
Sbjct: 233 ASGNIYIVSEPNRFYRF 249
|
| >3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica} Length = 179 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 6e-06
Identities = 30/138 (21%), Positives = 49/138 (35%), Gaps = 28/138 (20%)
Query: 167 FPGALELINQCKSKGLKVAVAS----------SADRI-----KVDANLAAAGLPVSMFDA 211
PG+L+ I + V +A+ + K+ LA G DA
Sbjct: 29 LPGSLQAIARLTQADWTVVLATNQSGLARGLFDTATLNAIHDKMHRALAQMGGV---VDA 85
Query: 212 IV-----SADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVT 266
I D KP P ++ ++ +V + + D+L +QAA A V
Sbjct: 86 IFMCPHGPDDGCACRKPLPGMYRDIARRYDVDLAGVPAVGDSLRDLQAAAQAGCAPWLVQ 145
Query: 267 T-----TLSEERLKEASP 279
T TL++ L E +
Sbjct: 146 TGNGRKTLAQGGLPEGTR 163
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 1e-05
Identities = 30/218 (13%), Positives = 70/218 (32%), Gaps = 48/218 (22%)
Query: 594 RLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDD 653
+ + ++ P LA+D +++ ++ +DS + V D G +
Sbjct: 446 TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQ----------- 494
Query: 654 ATFNRPQGLAYNAKKNLLYVADTENHALREIDFVN---DTVRTLAGNGTKGSDYQGGEKG 710
++P+ + + +Y D A +I + +L
Sbjct: 495 --GSKPRAIVVDPVHGFMYWTDWGTPA--KIKKGGLNGVDIYSLVTEN------------ 538
Query: 711 TSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNT 770
+ P + ++ ++Y + H I V+G R + +
Sbjct: 539 ----IQWPNGITLDLLSGRLYWVDSKLHSI-SSIDVNGGNR--------KTI---LEDEK 582
Query: 771 SFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR 808
A P +++ D ++ D + +I + N TG
Sbjct: 583 RLAHPFSLAVFEDK--VFWTDIINEAIFSANRLTGSDV 618
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 1e-04
Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 13/100 (13%)
Query: 595 LFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDA 654
L T +++P + +D+L+ RL+ DS + I D++G I +
Sbjct: 534 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED-----------EK 582
Query: 655 TFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTL 694
P LA + ++ D N A+ + + + L
Sbjct: 583 RLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTGSDVNL 620
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 4e-05
Identities = 30/218 (13%), Positives = 73/218 (33%), Gaps = 48/218 (22%)
Query: 594 RLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDD 653
+ + ++ P LA+D +++ ++ +DS + V D G +
Sbjct: 464 TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN----------- 512
Query: 654 ATFNRPQGLAYNAKKNLLYVADTENHALRE---IDFVNDTVRTLAGNGTKGSDYQGGEKG 710
++P+ + + +Y D A + ++ V+ + +L
Sbjct: 513 --GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--IYSLVTEN------------ 556
Query: 711 TSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNT 770
+ P + ++ ++Y + H I V+G R + +
Sbjct: 557 ----IQWPNGITLDLLSGRLYWVDSKLHSI-SSIDVNGGNR--------KTI---LEDEK 600
Query: 771 SFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR 808
A P +++ D ++ D + +I + N TG
Sbjct: 601 RLAHPFSLAVFEDK--VFWTDIINEAIFSANRLTGSDV 636
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 2e-04
Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 13/100 (13%)
Query: 595 LFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDA 654
L T +++P + +D+L+ RL+ DS + I D++G I +
Sbjct: 552 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK----------- 600
Query: 655 TFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTL 694
P LA + ++ D N A+ + + + L
Sbjct: 601 RLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTGSDVNL 638
|
| >2w43_A Hypothetical 2-haloalkanoic acid dehalogenase; hydrolase, metabolic process; HET: MES; 1.66A {Sulfolobus tokodaii} PDB: 2w11_A Length = 201 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 5e-05
Identities = 37/187 (19%), Positives = 65/187 (34%), Gaps = 22/187 (11%)
Query: 81 AVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANF--LGGVASVKGV 138
+ FD+ G + ++ + F +E T L MG F + + +
Sbjct: 3 ILAFDIFGTVLDTS-----TVIQEFRNKQLEYT--WLLTIMGK-YVEFEEITKITLRYIL 54
Query: 139 KGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDAN 198
K E+ + + A + L S+ +V S+ +V +
Sbjct: 55 KVRGEESKFDEELNKWKNLKA-------YEDTKYLKE--ISEIAEVYALSNGSINEVKQH 105
Query: 199 LAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAA 258
L GL F I SA++ + KP+P ++ + E ++ V AK A
Sbjct: 106 LERNGLL-RYFKGIFSAESVKEYKPSPKVYKYFLDSIGA--KEAFLVSSNAFDVIGAKNA 162
Query: 259 QMRCIAV 265
MR I V
Sbjct: 163 GMRSIFV 169
|
| >2o2x_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP: c.108.1.19 Length = 218 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 7e-05
Identities = 26/138 (18%), Positives = 44/138 (31%), Gaps = 24/138 (17%)
Query: 168 PGALELINQCKSKGLKVAVAS----------SADRI-----KVDANLAAAGLPVSMF--- 209
P L I G+ V V + +V L G+ V M
Sbjct: 59 PQMLPAIATANRAGIPVVVVTNQSGIARGYFGWSAFAAVNGRVLELLREEGVFVDMVLAC 118
Query: 210 ----DAIVSADAFENL--KPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCI 263
+ ++ KP P + + A K L + +++ D LA +QA K A +
Sbjct: 119 AYHEAGVGPLAIPDHPMRKPNPGMLVEAGKRLALDLQRSLIVGDKLADMQAGKRAGLAQG 178
Query: 264 AVTTTLSEERLKEASPSL 281
+ + + A L
Sbjct: 179 WLVDGEAAVQPGFAIRPL 196
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Length = 328 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 9e-05
Identities = 21/155 (13%), Positives = 45/155 (29%), Gaps = 26/155 (16%)
Query: 603 PGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGL 662
P L +D N+++ + + +I + + F + P +
Sbjct: 174 PTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT--VEKQFKFKLGDWPSEV 230
Query: 663 AYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVC 722
N ++ LY + + + D V + + + +
Sbjct: 231 QLNGTRDTLYWINNDIWR---MPVEADRVPVRPFLEFRDT--------------KYYGLT 273
Query: 723 YKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDG 757
P N +VY+A A G+ +S G
Sbjct: 274 VNPNNGEVYVADAID------YQQQGIVYRYSPQG 302
|
| >2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Length = 130 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 9e-05
Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 27/120 (22%)
Query: 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEK--KYKDMPFTVVGVHSAKFDNEKDLEAIRNA 509
+ K++ +D +T C C + + Y + F + K D EK
Sbjct: 26 EDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNL-----KMDMEK-------- 72
Query: 510 VLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569
+G + L ++ GV+++PT + +G+++ +L G +L V+ +
Sbjct: 73 -----------GEG-VELRKKYGVHAYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGV 120
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Length = 305 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 43/252 (17%), Positives = 68/252 (26%), Gaps = 58/252 (23%)
Query: 613 NRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLY 672
L SD R++ DG V + G A +A++ L++
Sbjct: 57 RTLVWSDLVGRRVLGWREDGTVDVLL---------------DATAFTNGNAVDAQQRLVH 101
Query: 673 VADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYI 732
R + L G Y G LNSP D+ + ++
Sbjct: 102 CEHGRRAITR--SDADGQAHLLVGR------YAGKR------LNSPNDLIVAR-DGAIWF 146
Query: 733 AMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSS-LNTSFAQPSGISLSPDFMEIYVAD 791
Y +GS P+G++ SPD +YV+
Sbjct: 147 TDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDHPNGLAFSPDEQTLYVSQ 206
Query: 792 SESSS-----IRALNLKTG---GSRLLAGGDPIFPDNLFKFG---DRDGMGSEVLLQHPL 840
+ I A + G R A PD G DR G
Sbjct: 207 TPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPD-----GFCVDRGG----------- 250
Query: 841 GVYCAKNGQIYV 852
++ + + V
Sbjct: 251 WLWSSSGTGVCV 262
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Length = 314 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 35/268 (13%), Positives = 76/268 (28%), Gaps = 52/268 (19%)
Query: 612 NNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLL 671
+ ++ I+ DL G++ + + P G + N L
Sbjct: 35 APEVEVNGKPAGEILRIDLKT---------GKKTVICKPEVNGYGGIPAGCQCDRDANQL 85
Query: 672 YVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKP-----I 726
+VAD L + D +G + + D + I
Sbjct: 86 FVADMRLGLLV-VQTDGTFEEIAK------KDSEG------RRMQGCNDCAFDYEGNLWI 132
Query: 727 NEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPD--- 783
+ + F+ DG ++T+F P+GI++
Sbjct: 133 TAPAGEVAPADYTRSMQEKFGSIYC-FTTDG------QMIQVDTAFQFPNGIAVRHMNDG 185
Query: 784 -FMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGV 842
++ VA++ + + + ++K + G DGM
Sbjct: 186 RPYQLIVAETPTKKLWSYDIKGPAK--IENKKVWGHIPGTHEGGADGMD----------- 232
Query: 843 YCAKNGQIYVADSYNHKIKKLDPASNRV 870
++ + VA+ + I+ P +
Sbjct: 233 -FDEDNNLLVANWGSSHIEVFGPDGGQP 259
|
| >2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A Length = 142 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 3e-04
Identities = 14/124 (11%), Positives = 36/124 (29%), Gaps = 28/124 (22%)
Query: 446 QFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEA 505
+ + + V++L + L +++ + V + + +
Sbjct: 29 DWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADL---EQSEAIGD 85
Query: 506 IRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLV 565
R+ + +P V +GKL L+G +L L+
Sbjct: 86 ------RFNVR------------------RFPATLVF-TDGKLRGALSGIHPWAELLTLM 120
Query: 566 EAAL 569
+ +
Sbjct: 121 RSIV 124
|
| >3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} Length = 172 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 3e-04
Identities = 31/153 (20%), Positives = 52/153 (33%), Gaps = 14/153 (9%)
Query: 431 PEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKK-YKDMPFTV 489
E AK D + R+ K V+LDF Y C+NC + + + K +
Sbjct: 27 NEVHAKFDDYDLGMEYARQH--NKPVMLDFTGYGCVNC-RKMELAVWTDPKVSSIINNDY 83
Query: 490 VGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRE-LGVNSWPTFAVVGPNGKL 548
V + + E ++ + V D L R G N+ P + ++ G
Sbjct: 84 VLITLYVDNKTPLTEPVKIMENGTERTLRTVGDKWSYLQRVKFGANAQPFYVLIDNEGNP 143
Query: 549 LAQLAG-----EGHRKDLDDLVEAALLFYGKKK 576
L + + L +E Y K+K
Sbjct: 144 LNKSYAYDEDISKYINFLQTGLEN----YRKEK 172
|
| >1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Length = 107 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 4e-04
Identities = 19/118 (16%), Positives = 34/118 (28%), Gaps = 31/118 (26%)
Query: 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVL 511
++ V+ F C C+ + P + KY F V V + A
Sbjct: 20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDV-----HQCQGTAA------ 68
Query: 512 RYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569
+++ PTF N + Q G L++ ++ L
Sbjct: 69 ------------------TNNISATPTFQFF-RNKVRIDQYQG-ADAVGLEEKIKQHL 106
|
| >3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Length = 105 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 4e-04
Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 30/103 (29%)
Query: 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVL 511
K+VV+DF C C + P L +KY ++ F V V
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDV------------------- 59
Query: 512 RYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAG 554
D ++ E V S PTF G+ + + +G
Sbjct: 60 ----------DDCQDVASESEVKSMPTFQFF-KKGQKVGEFSG 91
|
| >3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A Length = 139 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 5e-04
Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 31/118 (26%)
Query: 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVL 511
GK+V+ +F C + P L + Y + F V+ V
Sbjct: 45 DGKIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLVIDV------------------- 85
Query: 512 RYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569
D + + + PTF +G+ + +L G ++ +L + A L
Sbjct: 86 ----------DELSDFSASWEIKATPTF-FFLRDGQQVDKLVG-ANKPELHKKITAIL 131
|
| >3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Length = 116 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 5e-04
Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 30/103 (29%)
Query: 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVL 511
K+VV+DF C + P L +KY ++ F V V
Sbjct: 30 GDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDV------------------- 70
Query: 512 RYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAG 554
D ++ E V S PTF G+ + + +G
Sbjct: 71 ----------DDCQDVASECEVKSMPTFQFF-KKGQKVGEFSG 102
|
| >1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 Length = 113 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 8e-04
Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 31/115 (26%)
Query: 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVL 511
K++V+DF C C + P L KK+ ++ F V V
Sbjct: 25 SQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDV------------------- 65
Query: 512 RYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVE 566
D + E V + PTF + +GKL+ + G + L LV
Sbjct: 66 ----------DELKAVAEEWNVEAMPTFIFL-KDGKLVDKTVG-ADKDGLPTLVA 108
|
| >1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 Length = 124 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 8e-04
Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 30/103 (29%)
Query: 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVL 511
+VV+DF C C + P L KK ++ F V
Sbjct: 37 SKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDT------------------- 77
Query: 512 RYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAG 554
D ++ + + + PTF + GK+L ++ G
Sbjct: 78 ----------DELKSVASDWAIQAMPTFMFL-KEGKILDKVVG 109
|
| >3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} Length = 133 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 8e-04
Identities = 23/156 (14%), Positives = 40/156 (25%), Gaps = 32/156 (20%)
Query: 426 TTPIVPEFPAKLDWLNTAPLQFRRDLK-GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD 484
+ + + D + K +L F C +C + L +
Sbjct: 1 SNALNLPYDEHADAWTQVKKALAAGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALI 60
Query: 485 MP-FTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVG 543
F VV + FD +L YG + P VV
Sbjct: 61 AKHFEVVKIDVGNFDRNLELSQ------AYGD---------------PIQDGIPAVVVVN 99
Query: 544 PNGKLLAQLAGEGHRKDLDDLVEAALLFYGKKKLLD 579
+GK+ + +L A + + D
Sbjct: 100 SDGKVR-------YTTKGGELANAR--KMSDQGIYD 126
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1089 | |||
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 99.97 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 99.97 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 99.97 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.96 | |
| 3kbb_A | 216 | Phosphorylated carbohydrates phosphatase TM_1254; | 99.95 | |
| 4g9b_A | 243 | Beta-PGM, beta-phosphoglucomutase; HAD, putative p | 99.95 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.95 | |
| 2ah5_A | 210 | COG0546: predicted phosphatases; MCSG, structural | 99.94 | |
| 4gib_A | 250 | Beta-phosphoglucomutase; rossmann fold, HAD-like, | 99.93 | |
| 4ex6_A | 237 | ALNB; modified rossman fold, phosphatase, magnesiu | 99.93 | |
| 2hi0_A | 240 | Putative phosphoglycolate phosphatase; YP_619066.1 | 99.93 | |
| 3qxg_A | 243 | Inorganic pyrophosphatase; hydrolase, magnesium bi | 99.93 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 99.93 | |
| 3mc1_A | 226 | Predicted phosphatase, HAD family; PSI2, NYSGXRC, | 99.92 | |
| 3s6j_A | 233 | Hydrolase, haloacid dehalogenase-like family; stru | 99.92 | |
| 3dv9_A | 247 | Beta-phosphoglucomutase; structural genomics, APC6 | 99.92 | |
| 2pib_A | 216 | Phosphorylated carbohydrates phosphatase TM_1254; | 99.92 | |
| 3sd7_A | 240 | Putative phosphatase; structural genomics, haloaci | 99.92 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.92 | |
| 3l5k_A | 250 | Protein GS1, haloacid dehalogenase-like hydrolase | 99.92 | |
| 2nyv_A | 222 | Pgpase, PGP, phosphoglycolate phosphatase; structu | 99.92 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.91 | |
| 2hsz_A | 243 | Novel predicted phosphatase; structural genomics, | 99.91 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.91 | |
| 3iru_A | 277 | Phoshonoacetaldehyde hydrolase like protein; phosp | 99.91 | |
| 3e58_A | 214 | Putative beta-phosphoglucomutase; structu genomics | 99.91 | |
| 3nas_A | 233 | Beta-PGM, beta-phosphoglucomutase; PSI, structural | 99.91 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 99.91 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 99.91 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.91 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 99.91 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 99.91 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 99.91 | |
| 4eek_A | 259 | Beta-phosphoglucomutase-related protein; hydrolase | 99.91 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 99.91 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.91 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.91 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.91 | |
| 2hdo_A | 209 | Phosphoglycolate phosphatase; NP_784602.1, structu | 99.9 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 99.9 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 99.9 | |
| 3ed5_A | 238 | YFNB; APC60080, bacillus subtilis subsp. subtilis | 99.9 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 99.9 | |
| 3qnm_A | 240 | Haloacid dehalogenase-like hydrolase; structural g | 99.9 | |
| 1te2_A | 226 | Putative phosphatase; structural genomics, phospha | 99.9 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 99.9 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 99.89 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.89 | |
| 2hcf_A | 234 | Hydrolase, haloacid dehalogenase-like family; NP_6 | 99.89 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 99.89 | |
| 3lor_A | 160 | Thiol-disulfide isomerase and thioredoxins; PSI, M | 99.89 | |
| 2wf7_A | 221 | Beta-PGM, beta-phosphoglucomutase; transition stat | 99.89 | |
| 3eyt_A | 158 | Uncharacterized protein SPOA0173; thioredoxin-like | 99.89 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.89 | |
| 2hoq_A | 241 | Putative HAD-hydrolase PH1655; haloacid dehalogena | 99.89 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 99.89 | |
| 3kzx_A | 231 | HAD-superfamily hydrolase, subfamily IA, variant; | 99.88 | |
| 3k1z_A | 263 | Haloacid dehalogenase-like hydrolase domain-conta | 99.88 | |
| 4g2e_A | 157 | Peroxiredoxin; redox protein, structural genomics, | 99.88 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 99.88 | |
| 3d6j_A | 225 | Putative haloacid dehalogenase-like hydrolase; str | 99.88 | |
| 3fw2_A | 150 | Thiol-disulfide oxidoreductase; structural genomic | 99.88 | |
| 1swv_A | 267 | Phosphonoacetaldehyde hydrolase; HAD enzyme superf | 99.88 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.88 | |
| 2om6_A | 235 | Probable phosphoserine phosphatase; rossmann fold, | 99.88 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.88 | |
| 2gfh_A | 260 | Haloacid dehalogenase-like hydrolase domain conta; | 99.88 | |
| 4fo5_A | 143 | Thioredoxin-like protein; AHPC/TSA family protein, | 99.87 | |
| 2fdr_A | 229 | Conserved hypothetical protein; SAD, structural ge | 99.87 | |
| 2b5x_A | 148 | YKUV protein, TRXY; thioredoxin-like, oxidoreducta | 99.87 | |
| 3ewl_A | 142 | Uncharacterized conserved protein BF1870; alpha-be | 99.87 | |
| 3eur_A | 142 | Uncharacterized protein; PSI2,MCSG, conserved prot | 99.87 | |
| 2go7_A | 207 | Hydrolase, haloacid dehalogenase-like family; stru | 99.87 | |
| 2f9s_A | 151 | Thiol-disulfide oxidoreductase RESA; thioredoxin-l | 99.87 | |
| 4gqc_A | 164 | Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f | 99.87 | |
| 3umc_A | 254 | Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeru | 99.87 | |
| 3umg_A | 254 | Haloacid dehalogenase; defluorinase, hydrolase; 2. | 99.87 | |
| 3drn_A | 161 | Peroxiredoxin, bacterioferritin comigratory prote | 99.87 | |
| 1yns_A | 261 | E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo | 99.87 | |
| 3smv_A | 240 | S-(-)-azetidine-2-carboxylate hydrolase; haloacid | 99.87 | |
| 2qlt_A | 275 | (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, sac | 99.87 | |
| 2lrn_A | 152 | Thiol:disulfide interchange protein; structural ge | 99.86 | |
| 2hyx_A | 352 | Protein DIPZ; thioredoxin fold, jelly-roll, struct | 99.86 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.86 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.86 | |
| 3umb_A | 233 | Dehalogenase-like hydrolase; 2.20A {Ralstonia sola | 99.86 | |
| 3hcz_A | 148 | Possible thiol-disulfide isomerase; APC61559.2, cy | 99.86 | |
| 3gkn_A | 163 | Bacterioferritin comigratory protein; BCP, PRX, at | 99.86 | |
| 3u5r_E | 218 | Uncharacterized protein; structural genomics, PSI- | 99.86 | |
| 3or5_A | 165 | Thiol:disulfide interchange protein, thioredoxin p | 99.86 | |
| 3um9_A | 230 | Haloacid dehalogenase, type II; haloacid dehalogen | 99.86 | |
| 3ddh_A | 234 | Putative haloacid dehalogenase-like family hydrol; | 99.86 | |
| 3fkf_A | 148 | Thiol-disulfide oxidoreductase; structural genomic | 99.86 | |
| 2i3y_A | 215 | Epididymal secretory glutathione peroxidase; thior | 99.86 | |
| 3lwa_A | 183 | Secreted thiol-disulfide isomerase; thioredoxin, P | 99.86 | |
| 3kh7_A | 176 | Thiol:disulfide interchange protein DSBE; TRX-like | 99.86 | |
| 2l5o_A | 153 | Putative thioredoxin; structural genomics, unknown | 99.85 | |
| 3u26_A | 234 | PF00702 domain protein; structural genomics, PSI-b | 99.85 | |
| 2f8a_A | 208 | Glutathione peroxidase 1; thioredoxin fold, struct | 99.85 | |
| 2v1m_A | 169 | Glutathione peroxidase; selenium, selenocysteine, | 99.85 | |
| 2no4_A | 240 | (S)-2-haloacid dehalogenase IVA; HAD superfamily, | 99.85 | |
| 3erw_A | 145 | Sporulation thiol-disulfide oxidoreductase A; thio | 99.85 | |
| 3gl3_A | 152 | Putative thiol:disulfide interchange protein DSBE; | 99.85 | |
| 3kcm_A | 154 | Thioredoxin family protein; SGX, thioredoxin prote | 99.85 | |
| 3raz_A | 151 | Thioredoxin-related protein; structural genomics, | 99.85 | |
| 2p31_A | 181 | CL683, glutathione peroxidase 7; thioredoxin fold, | 99.85 | |
| 3m9l_A | 205 | Hydrolase, haloacid dehalogenase-like family; HAD | 99.85 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.85 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.85 | |
| 2vup_A | 190 | Glutathione peroxidase-like protein; oxidoreductas | 99.85 | |
| 2p5q_A | 170 | Glutathione peroxidase 5; thioredoxin fold, oxidor | 99.85 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.85 | |
| 3kij_A | 180 | Probable glutathione peroxidase 8; human PDI-perox | 99.85 | |
| 2pke_A | 251 | Haloacid delahogenase-like family hydrolase; NP_63 | 99.84 | |
| 2gs3_A | 185 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 99.84 | |
| 2cvb_A | 188 | Probable thiol-disulfide isomerase/thioredoxin; re | 99.84 | |
| 2r37_A | 207 | Glutathione peroxidase 3; plasma, structural genom | 99.84 | |
| 3vay_A | 230 | HAD-superfamily hydrolase; rossmann fold, haloacid | 99.84 | |
| 3dwv_A | 187 | Glutathione peroxidase-like protein; alpha beta, 3 | 99.84 | |
| 2lja_A | 152 | Putative thiol-disulfide oxidoreductase; structura | 99.84 | |
| 1zrn_A | 232 | L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseud | 99.84 | |
| 3ixr_A | 179 | Bacterioferritin comigratory protein; alpha beta p | 99.84 | |
| 3cmi_A | 171 | Peroxiredoxin HYR1; thioredoxin-like fold, oxidore | 99.84 | |
| 3nuq_A | 282 | Protein SSM1, putative nucleotide phosphatase; sup | 99.84 | |
| 2g80_A | 253 | Protein UTR4; YEL038W, UTR4 protein (unknown trans | 99.84 | |
| 2ywi_A | 196 | Hypothetical conserved protein; uncharacterized co | 99.84 | |
| 2ggt_A | 164 | SCO1 protein homolog, mitochondrial; copper chaper | 99.84 | |
| 2oda_A | 196 | Hypothetical protein pspto_2114; haloacid dehaloge | 99.84 | |
| 1xvw_A | 160 | Hypothetical protein RV2238C/MT2298; thioredoxin f | 99.84 | |
| 4evm_A | 138 | Thioredoxin family protein; structural genomics, n | 99.84 | |
| 2lrt_A | 152 | Uncharacterized protein; structural genomics, thio | 99.84 | |
| 1jfu_A | 186 | Thiol:disulfide interchange protein TLPA; thioredo | 99.83 | |
| 2c0d_A | 221 | Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th | 99.83 | |
| 2w43_A | 201 | Hypothetical 2-haloalkanoic acid dehalogenase; hyd | 99.83 | |
| 1n8j_A | 186 | AHPC, alkyl hydroperoxide reductase C22 protein; p | 99.83 | |
| 2obi_A | 183 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 99.83 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 99.83 | |
| 1zzo_A | 136 | RV1677; thioredoxin fold, structural genomics, PSI | 99.83 | |
| 2rli_A | 171 | SCO2 protein homolog, mitochondrial; copper protei | 99.83 | |
| 1xzo_A | 174 | BSSCO, hypothetical protein YPMQ; thioredoxin-like | 99.83 | |
| 1we0_A | 187 | Alkyl hydroperoxide reductase C; peroxiredoxin, AH | 99.82 | |
| 1lu4_A | 136 | Soluble secreted antigen MPT53; thioredoxin-like f | 99.82 | |
| 3ztl_A | 222 | Thioredoxin peroxidase; oxidoreductase, reductase, | 99.82 | |
| 2bmx_A | 195 | Alkyl hydroperoxidase C; peroxiredoxin, antioxidan | 99.82 | |
| 2pn8_A | 211 | Peroxiredoxin-4; thioredoxin, oxidoreductase, stru | 99.82 | |
| 2a4v_A | 159 | Peroxiredoxin DOT5; yeast nuclear thiol peroxidase | 99.82 | |
| 3ha9_A | 165 | Uncharacterized thioredoxin-like protein; PSI, MCS | 99.82 | |
| 1qq5_A | 253 | Protein (L-2-haloacid dehalogenase); hydrolase; 1. | 99.82 | |
| 2fi1_A | 190 | Hydrolase, haloacid dehalogenase-like family; stru | 99.82 | |
| 3ia1_A | 154 | THIO-disulfide isomerase/thioredoxin; oxidoreducta | 99.82 | |
| 3cnh_A | 200 | Hydrolase family protein; NP_295428.1, predicted h | 99.82 | |
| 2b1k_A | 168 | Thiol:disulfide interchange protein DSBE; C-termin | 99.82 | |
| 1psq_A | 163 | Probable thiol peroxidase; structural genomics, NY | 99.82 | |
| 1tp9_A | 162 | Peroxiredoxin, PRX D (type II); oligomer, thioredo | 99.82 | |
| 3ib6_A | 189 | Uncharacterized protein; structural genomics, unkn | 99.82 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 99.82 | |
| 2h30_A | 164 | Thioredoxin, peptide methionine sulfoxide reductas | 99.82 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.82 | |
| 2zg6_A | 220 | Putative uncharacterized protein ST2620, probable | 99.82 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.82 | |
| 1q98_A | 165 | Thiol peroxidase, TPX; structural genomics, NYSGXR | 99.81 | |
| 1zof_A | 198 | Alkyl hydroperoxide-reductase; decamer, toroide-sh | 99.81 | |
| 1kng_A | 156 | Thiol:disulfide interchange protein CYCY; thioredo | 99.81 | |
| 1uul_A | 202 | Tryparedoxin peroxidase homologue; peroxiredoxin, | 99.81 | |
| 2i81_A | 213 | 2-Cys peroxiredoxin; structural genomics consortiu | 99.81 | |
| 3qpm_A | 240 | Peroxiredoxin; oxidoreductase, thioredoxin fold, p | 99.81 | |
| 4dcc_A | 229 | Putative haloacid dehalogenase-like hydrolase; mag | 99.81 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.81 | |
| 3mng_A | 173 | Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, | 99.81 | |
| 3p7x_A | 166 | Probable thiol peroxidase; thioredoxin fold, oxido | 99.81 | |
| 2yzh_A | 171 | Probable thiol peroxidase; redox protein, antioxid | 99.81 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.81 | |
| 2wfc_A | 167 | Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan | 99.81 | |
| 2h01_A | 192 | 2-Cys peroxiredoxin; thioredoxin peroxidase, struc | 99.81 | |
| 3zrd_A | 200 | Thiol peroxidase; oxidoreductase, 2Cys peroxiredox | 99.81 | |
| 1zye_A | 220 | Thioredoxin-dependent peroxide reductase; catenane | 99.8 | |
| 3hdc_A | 158 | Thioredoxin family protein; ATCC53774, DSM 7210, , | 99.8 | |
| 2i6x_A | 211 | Hydrolase, haloacid dehalogenase-like family; HAD | 99.8 | |
| 3uma_A | 184 | Hypothetical peroxiredoxin protein; nysgrc, PSI bi | 99.8 | |
| 1qmv_A | 197 | Human thioredoxin peroxidase-B; peroxiredoxin, sul | 99.8 | |
| 3tjj_A | 254 | Peroxiredoxin-4; thioredoxin fold, sulfenylation, | 99.8 | |
| 2p11_A | 231 | Hypothetical protein; putative haloacid dehalogena | 99.8 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.8 | |
| 1xvq_A | 175 | Thiol peroxidase; thioredoxin fold, structural gen | 99.8 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.8 | |
| 2k6v_A | 172 | Putative cytochrome C oxidase assembly protein; th | 99.8 | |
| 2ls5_A | 159 | Uncharacterized protein; structural genomics, unkn | 99.67 | |
| 3l8h_A | 179 | Putative haloacid dehalogenase-like hydrolase; HAD | 99.79 | |
| 2jsy_A | 167 | Probable thiol peroxidase; solution structure, ant | 99.79 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.79 | |
| 3m1y_A | 217 | Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, | 99.79 | |
| 2b7k_A | 200 | SCO1 protein; metallochaperone, cytochrome C oxida | 99.78 | |
| 2gmw_A | 211 | D,D-heptose 1,7-bisphosphate phosphatase; Zn-bindi | 99.78 | |
| 2pwj_A | 171 | Mitochondrial peroxiredoxin; alpha and beta protei | 99.78 | |
| 3me7_A | 170 | Putative uncharacterized protein; electron transfe | 99.78 | |
| 1prx_A | 224 | HORF6; peroxiredoxin, hydrogen peroxide, redox reg | 99.77 | |
| 2v2g_A | 233 | Peroxiredoxin 6; oxidoreductase, antioxidant enzym | 99.77 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.77 | |
| 1nnl_A | 225 | L-3-phosphoserine phosphatase; PSP, HPSP, phospho- | 99.77 | |
| 1xcc_A | 220 | 1-Cys peroxiredoxin; unknown function, structural | 99.77 | |
| 2b0c_A | 206 | Putative phosphatase; alpha-D-glucose-1-phosphate, | 99.77 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.76 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.76 | |
| 3keb_A | 224 | Probable thiol peroxidase; structural genomics, AP | 99.76 | |
| 1i5g_A | 144 | Tryparedoxin II; electron transport; HET: TS5; 1.4 | 99.76 | |
| 2c4n_A | 250 | Protein NAGD; nucleotide phosphatase, HAD superfam | 99.76 | |
| 1nm3_A | 241 | Protein HI0572; hybrid, peroxiredoxin, glutaredoxi | 99.75 | |
| 4hde_A | 170 | SCO1/SENC family lipoprotein; structural genomics, | 99.75 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.75 | |
| 3sbc_A | 216 | Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c | 99.75 | |
| 4eze_A | 317 | Haloacid dehalogenase-like hydrolase; magnesium bi | 99.75 | |
| 1yv9_A | 264 | Hydrolase, haloacid dehalogenase family; hypotheti | 99.74 | |
| 3a2v_A | 249 | Probable peroxiredoxin; thioredoxin peroxidase, hy | 99.73 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 99.73 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 99.73 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.73 | |
| 1o8x_A | 146 | Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot | 99.73 | |
| 3s9f_A | 165 | Tryparedoxin; thioredoxin fold, disulfide reductas | 99.73 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.73 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.73 | |
| 3tue_A | 219 | Tryparedoxin peroxidase; thioredoxin fold, peroxir | 99.73 | |
| 1o73_A | 144 | Tryparedoxin; electron transport, trypanosomatid, | 99.72 | |
| 2ho4_A | 259 | Haloacid dehalogenase-like hydrolase domain contai | 99.72 | |
| 1rku_A | 206 | Homoserine kinase; phosphoserine phosphatase, phos | 99.71 | |
| 2pr7_A | 137 | Haloacid dehalogenase/epoxide hydrolase family; NP | 99.71 | |
| 2fea_A | 236 | 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate | 99.71 | |
| 3i28_A | 555 | Epoxide hydrolase 2; aromatic hydrocarbons catabol | 99.71 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.71 | |
| 3p96_A | 415 | Phosphoserine phosphatase SERB; ssgcid, structural | 99.71 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.7 | |
| 2o2x_A | 218 | Hypothetical protein; structural genomics, joint c | 99.7 | |
| 2lus_A | 143 | Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci | 99.52 | |
| 3kd3_A | 219 | Phosphoserine phosphohydrolase-like protein; csgid | 99.69 | |
| 4eo3_A | 322 | Bacterioferritin comigratory protein/NADH dehydro; | 99.69 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.69 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.68 | |
| 2wm8_A | 187 | MDP-1, magnesium-dependent phosphatase 1; haloacid | 99.68 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.68 | |
| 1l7m_A | 211 | Phosphoserine phosphatase; rossmann fold, four-hel | 99.68 | |
| 1qyi_A | 384 | ZR25, hypothetical protein; structural genomics, P | 99.67 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.66 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.66 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 99.66 | |
| 2hx1_A | 284 | Predicted sugar phosphatases of the HAD superfamil | 99.65 | |
| 3fvv_A | 232 | Uncharacterized protein; unknown function, structu | 99.65 | |
| 1zjj_A | 263 | Hypothetical protein PH1952; alpha/beta hydrolase | 99.64 | |
| 2fpr_A | 176 | Histidine biosynthesis bifunctional protein HISB; | 99.64 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.64 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.64 | |
| 4f82_A | 176 | Thioredoxin reductase; structural genomics, niaid, | 99.63 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.63 | |
| 1q92_A | 197 | 5(3)-deoxyribonucleotidase; alpha-beta rossman fol | 99.63 | |
| 2i7d_A | 193 | 5'(3')-deoxyribonucleotidase, cytosolic type; hydr | 99.62 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.62 | |
| 2oyc_A | 306 | PLP phosphatase, pyridoxal phosphate phosphatase; | 99.62 | |
| 1vjr_A | 271 | 4-nitrophenylphosphatase; TM1742, structural genom | 99.62 | |
| 3n28_A | 335 | Phosphoserine phosphatase; HAD family hydrolase, s | 99.61 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 99.6 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.6 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.59 | |
| 2b82_A | 211 | APHA, class B acid phosphatase; DDDD acid phosphat | 99.58 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.58 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.58 | |
| 4ap9_A | 201 | Phosphoserine phosphatase; hydrolase, haloacid deh | 99.57 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.57 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.57 | |
| 2xhf_A | 171 | Peroxiredoxin 5; oxidoreductase, antioxidant enzym | 99.57 | |
| 2p9j_A | 162 | Hypothetical protein AQ2171; secsg, riken, PSI, st | 99.57 | |
| 3epr_A | 264 | Hydrolase, haloacid dehalogenase-like family; stru | 99.56 | |
| 2x4d_A | 271 | HLHPP, phospholysine phosphohistidine inorganic py | 99.56 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.55 | |
| 2l57_A | 126 | Uncharacterized protein; structural genomics, unkn | 99.55 | |
| 3a1c_A | 287 | Probable copper-exporting P-type ATPase A; ATP-bin | 99.55 | |
| 2yj3_A | 263 | Copper-transporting ATPase; hydrolase, P-type ATPa | 99.31 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.54 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.54 | |
| 1xiy_A | 182 | Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin | 99.53 | |
| 3e8m_A | 164 | Acylneuraminate cytidylyltransferase; 2-keto-3-deo | 99.53 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.53 | |
| 3hxs_A | 141 | Thioredoxin, TRXP; electron transport; 2.00A {Bact | 99.52 | |
| 3qgm_A | 268 | P-nitrophenyl phosphatase (PHO2); structural genom | 99.52 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 99.52 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 99.52 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.51 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.51 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.5 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 99.5 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.5 | |
| 1k1e_A | 180 | Deoxy-D-mannose-octulosonate 8-phosphate phosphat; | 99.5 | |
| 3ul3_B | 128 | Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; | 99.5 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 99.5 | |
| 3mmz_A | 176 | Putative HAD family hydrolase; structural genomics | 99.5 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.5 | |
| 3skx_A | 280 | Copper-exporting P-type ATPase B; P1B-ATPase, ATP | 99.49 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.49 | |
| 3pdw_A | 266 | Uncharacterized hydrolase YUTF; structural genomic | 99.49 | |
| 3ij5_A | 211 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; | 99.49 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.49 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.49 | |
| 2av4_A | 160 | Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI | 99.48 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 99.48 | |
| 2fwh_A | 134 | Thiol:disulfide interchange protein DSBD; thioredo | 99.48 | |
| 3zzx_A | 105 | Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va | 99.47 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.47 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.47 | |
| 3mn1_A | 189 | Probable YRBI family phosphatase; structural genom | 99.47 | |
| 3bwv_A | 180 | Putative 5'(3')-deoxyribonucleotidase; NP_764060.1 | 99.46 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 99.46 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.44 | |
| 3f9u_A | 172 | Putative exported cytochrome C biogenesis-related; | 99.44 | |
| 2ju5_A | 154 | Thioredoxin disulfide isomerase; protein, oxidored | 99.43 | |
| 3n07_A | 195 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; | 99.43 | |
| 3n1u_A | 191 | Hydrolase, HAD superfamily, subfamily III A; struc | 99.43 | |
| 3qfa_C | 116 | Thioredoxin; protein-protein complex, rossmann fol | 99.43 | |
| 3gix_A | 149 | Thioredoxin-like protein 4B; PRE-mRNA splicing, TX | 99.42 | |
| 3p2a_A | 148 | Thioredoxin 2, putative thioredoxin-like protein; | 99.41 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.41 | |
| 2r8e_A | 188 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphata | 99.41 | |
| 2l5l_A | 136 | Thioredoxin; structural genomics, electron transpo | 99.4 | |
| 2qsi_A | 137 | Putative hydrogenase expression/formation protein; | 99.4 | |
| 2voc_A | 112 | Thioredoxin; electron transport, homodimer, disulf | 99.4 | |
| 2dml_A | 130 | Protein disulfide-isomerase A6; thioredoxin domain | 99.39 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 99.39 | |
| 3f3q_A | 109 | Thioredoxin-1; His TAG, electron transport, cytopl | 99.39 | |
| 2ppt_A | 155 | Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc | 99.39 | |
| 2trx_A | 108 | Thioredoxin; electron transport; 1.68A {Escherichi | 99.39 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.39 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 99.38 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 99.38 | |
| 2o8v_B | 128 | Thioredoxin 1; disulfide crosslinked complex, oxid | 99.38 | |
| 3tco_A | 109 | Thioredoxin (TRXA-1); disulfide oxidoreductase, ox | 99.38 | |
| 4euy_A | 105 | Uncharacterized protein; structural genomics, PSI- | 99.37 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.37 | |
| 3fk8_A | 133 | Disulphide isomerase; APC61824.1, xylella fastidio | 99.37 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.37 | |
| 1nsw_A | 105 | Thioredoxin, TRX; thermostability, electron transp | 99.37 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 99.36 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 99.36 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.36 | |
| 1dby_A | 107 | Chloroplast thioredoxin M CH2; thioredoxin CH2, ch | 99.36 | |
| 1t00_A | 112 | Thioredoxin, TRX; redox regulation, multifunction | 99.36 | |
| 2pu9_C | 111 | TRX-F, thioredoxin F-type, chloroplast; protein-pr | 99.36 | |
| 1w4v_A | 119 | Thioredoxin, mitochondrial; antioxidant enzyme, mi | 99.36 | |
| 3d6i_A | 112 | Monothiol glutaredoxin-3; thioredoxin-like, electr | 99.36 | |
| 1xfl_A | 124 | Thioredoxin H1; AT3G51030, structural genomics, pr | 99.36 | |
| 1qgv_A | 142 | Spliceosomal protein U5-15KD; snRNP, thioredoxin, | 99.35 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.35 | |
| 3die_A | 106 | Thioredoxin, TRX; electron transport, SWAP domain, | 99.35 | |
| 3gyg_A | 289 | NTD biosynthesis operon putative hydrolase NTDB; P | 99.35 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 99.34 | |
| 3gnj_A | 111 | Thioredoxin domain protein; APC92103, STR genomics | 99.34 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.34 | |
| 1thx_A | 115 | Thioredoxin, thioredoxin 2; oxido-reductase, elect | 99.34 | |
| 1x5d_A | 133 | Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC | 99.34 | |
| 1ep7_A | 112 | Thioredoxin CH1, H-type; electron transport; 2.10A | 99.34 | |
| 2e0q_A | 104 | Thioredoxin; electron transport; 1.49A {Sulfolobus | 99.33 | |
| 3d22_A | 139 | TRXH4, thioredoxin H-type; electron transport, cyt | 99.33 | |
| 3m9j_A | 105 | Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} | 99.33 | |
| 1z6n_A | 167 | Hypothetical protein PA1234; alpha-beta-alpha sand | 99.33 | |
| 2i4a_A | 107 | Thioredoxin; acidophIle, disulfide exchange, oxido | 99.33 | |
| 3cxg_A | 133 | Putative thioredoxin; malaria, structural GEN oxid | 99.33 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 99.32 | |
| 2qgv_A | 140 | Hydrogenase-1 operon protein HYAE; alpha-beta prot | 99.32 | |
| 3nvb_A | 387 | Uncharacterized protein; protein FKBH, protein fkb | 99.32 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.32 | |
| 2kuc_A | 130 | Putative disulphide-isomerase; structural genomics | 99.32 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.31 | |
| 2dj1_A | 140 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.31 | |
| 1gh2_A | 107 | Thioredoxin-like protein; redox-active center, ele | 99.31 | |
| 2vlu_A | 122 | Thioredoxin, thioredoxin H isoform 2.; oxidoreduct | 99.31 | |
| 3hz4_A | 140 | Thioredoxin; NYSGXRC, PSI-II, reduced form, protei | 99.31 | |
| 2oe3_A | 114 | Thioredoxin-3; electron transport, alpha/beta sand | 99.3 | |
| 1r26_A | 125 | Thioredoxin; redox-active disulfide, electron tran | 99.3 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.3 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 99.3 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 99.29 | |
| 1fb6_A | 105 | Thioredoxin M; electron transport; 2.10A {Spinacia | 99.29 | |
| 1faa_A | 124 | Thioredoxin F; electron transport; 1.85A {Spinacia | 99.28 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.28 | |
| 2xc2_A | 117 | Thioredoxinn; oxidoreductase, protein disulfide re | 99.28 | |
| 2l6c_A | 110 | Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu | 99.28 | |
| 2yzu_A | 109 | Thioredoxin; redox protein, electron transport, st | 99.28 | |
| 3uvt_A | 111 | Thioredoxin domain-containing protein 5; thioredox | 99.28 | |
| 2dj3_A | 133 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.28 | |
| 1ti3_A | 113 | Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul | 99.28 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.28 | |
| 2j23_A | 121 | Thioredoxin; immune protein, autoreactivity, cross | 99.27 | |
| 1xwb_A | 106 | Thioredoxin; dimerization, redox regulation, THI X | 99.27 | |
| 1syr_A | 112 | Thioredoxin; SGPP, structural genomics, PSI, prote | 99.27 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.27 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 99.27 | |
| 3h79_A | 127 | Thioredoxin-like protein; thioredoxin fold, cataly | 99.26 | |
| 2vim_A | 104 | Thioredoxin, TRX; thioredoxin fold, oxidoreductase | 99.26 | |
| 2wz9_A | 153 | Glutaredoxin-3; protein binding; 1.55A {Homo sapie | 99.26 | |
| 3aps_A | 122 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.26 | |
| 3ewi_A | 168 | N-acylneuraminate cytidylyltransferase; beta barre | 99.26 | |
| 1v98_A | 140 | Thioredoxin; oxidoreductase, structural genomics, | 99.26 | |
| 1x5e_A | 126 | Thioredoxin domain containing protein 1; TMX, TXND | 99.25 | |
| 2vm1_A | 118 | Thioredoxin, thioredoxin H isoform 1.; oxidoreduct | 99.25 | |
| 1wr8_A | 231 | Phosphoglycolate phosphatase; alpha / beta core do | 99.25 | |
| 4dw8_A | 279 | Haloacid dehalogenase-like hydrolase; HAD, putativ | 99.25 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.25 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.24 | |
| 3apq_A | 210 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.24 | |
| 2f51_A | 118 | Thioredoxin; electron transport; 1.90A {Trichomona | 99.23 | |
| 3emx_A | 135 | Thioredoxin; structural genomics, oxidoreductase, | 99.23 | |
| 1sen_A | 164 | Thioredoxin-like protein P19; endoplasmic reticulu | 99.23 | |
| 1oaz_A | 123 | Thioredoxin 1; immune system, antibody/complex, an | 99.22 | |
| 3dnp_A | 290 | Stress response protein YHAX; structural PSI-2, pr | 99.22 | |
| 2lst_A | 130 | Thioredoxin; structural genomics, NEW YORK structu | 98.86 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.22 | |
| 2dj0_A | 137 | Thioredoxin-related transmembrane protein 2; AVLA2 | 99.22 | |
| 3dxb_A | 222 | Thioredoxin N-terminally fused to PUF60(UHM); spli | 99.21 | |
| 2i1u_A | 121 | Thioredoxin, TRX, MPT46; redox protein, electron t | 99.2 | |
| 1fo5_A | 85 | Thioredoxin; disulfide oxidoreductase, structural | 99.2 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.19 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.19 | |
| 1zma_A | 118 | Bacterocin transport accessory protein; alpha-beta | 99.18 | |
| 3kc2_A | 352 | Uncharacterized protein YKR070W; HAD-like, mitocho | 99.18 | |
| 2djj_A | 121 | PDI, protein disulfide-isomerase; thioredoxin fold | 99.18 | |
| 1nho_A | 85 | Probable thioredoxin; beta sheet, alpha helix, oxi | 99.18 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.17 | |
| 2i33_A | 258 | Acid phosphatase; HAD superfamily, hydrolase; 1.57 | 99.17 | |
| 1mek_A | 120 | Protein disulfide isomerase; electron transport, r | 99.16 | |
| 3fzq_A | 274 | Putative hydrolase; YP_001086940.1, putative haloa | 99.15 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 99.14 | |
| 3idv_A | 241 | Protein disulfide-isomerase A4; thioredoxin-like f | 99.14 | |
| 3ph9_A | 151 | Anterior gradient protein 3 homolog; thioredoxin f | 99.13 | |
| 3ira_A | 173 | Conserved protein; methanosarcina mazei,structural | 99.13 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 99.12 | |
| 3dao_A | 283 | Putative phosphatse; structural genomics, joint ce | 99.12 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.11 | |
| 3mpo_A | 279 | Predicted hydrolase of the HAD superfamily; SGX, P | 99.11 | |
| 2dbc_A | 135 | PDCL2, unnamed protein product; phosducin-like pro | 99.09 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.09 | |
| 2yj7_A | 106 | LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti | 98.68 | |
| 2es7_A | 142 | Q8ZP25_salty, putative thiol-disulfide isomerase a | 99.08 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 99.08 | |
| 1wmj_A | 130 | Thioredoxin H-type; structural genomics, program f | 99.08 | |
| 3evi_A | 118 | Phosducin-like protein 2; alpha beta, 3-layer(ABA) | 99.07 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.06 | |
| 1a8l_A | 226 | Protein disulfide oxidoreductase; PDI, thioredoxin | 99.04 | |
| 3kp8_A | 106 | Vkorc1/thioredoxin domain protein; blood coagulati | 99.04 | |
| 1ilo_A | 77 | Conserved hypothetical protein MTH895; beta-alpha- | 99.04 | |
| 2pq0_A | 258 | Hypothetical conserved protein GK1056; hyopthetica | 99.04 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.03 | |
| 3q6o_A | 244 | Sulfhydryl oxidase 1; protein disulfide isomerase, | 99.03 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.02 | |
| 2rbk_A | 261 | Putative uncharacterized protein; HAD-like phospha | 99.02 | |
| 1l6r_A | 227 | Hypothetical protein TA0175; structural genomics, | 99.02 | |
| 3dml_A | 116 | Putative uncharacterized protein; thioredoxin, oxi | 99.01 | |
| 3l7y_A | 304 | Putative uncharacterized protein SMU.1108C; hydrol | 99.0 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 98.99 | |
| 2hls_A | 243 | Protein disulfide oxidoreductase; thioredoxin fold | 98.98 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 98.97 | |
| 1rlm_A | 271 | Phosphatase; HAD family, rossman fold, hydrolase; | 98.96 | |
| 3t58_A | 519 | Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2. | 98.96 | |
| 3iv4_A | 112 | Putative oxidoreductase; APC23140, meticillin-resi | 98.96 | |
| 1wou_A | 123 | Thioredoxin -related protein, 14 kDa; electron tra | 98.95 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 98.94 | |
| 3ed3_A | 298 | Protein disulfide-isomerase MPD1; thioredoxin-like | 98.94 | |
| 3r4c_A | 268 | Hydrolase, haloacid dehalogenase-like hydrolase; h | 98.94 | |
| 1a0r_P | 245 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 98.93 | |
| 2r2j_A | 382 | Thioredoxin domain-containing protein 4; CRFS moti | 98.93 | |
| 3idv_A | 241 | Protein disulfide-isomerase A4; thioredoxin-like f | 98.93 | |
| 2trc_P | 217 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 98.92 | |
| 1sji_A | 350 | Calsequestrin 2, calsequestrin, cardiac muscle iso | 98.91 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 98.89 | |
| 2ywm_A | 229 | Glutaredoxin-like protein; redox protein, structur | 98.87 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 98.87 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 98.86 | |
| 3f8u_A | 481 | Protein disulfide-isomerase A3ERP57; endoplasmic r | 98.86 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 98.86 | |
| 2dlx_A | 153 | UBX domain-containing protein 7; UAS domain, prote | 98.84 | |
| 3gyk_A | 175 | 27KDA outer membrane protein; APC61738.2, siliciba | 98.84 | |
| 2b5e_A | 504 | Protein disulfide-isomerase; 2.40A {Saccharomyces | 98.84 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 98.83 | |
| 3pgv_A | 285 | Haloacid dehalogenase-like hydrolase; structural g | 98.81 | |
| 3f8u_A | 481 | Protein disulfide-isomerase A3ERP57; endoplasmic r | 98.81 | |
| 3uem_A | 361 | Protein disulfide-isomerase; thioredoxin-like doma | 98.8 | |
| 1eej_A | 216 | Thiol:disulfide interchange protein; oxidoreductas | 98.79 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 98.78 | |
| 3ga4_A | 178 | Dolichyl-diphosphooligosaccharide-protein glycosyl | 98.78 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.77 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 98.77 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 98.76 | |
| 3ocu_A | 262 | Lipoprotein E; hydrolase, outer membrane; HET: NMN | 98.76 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 98.76 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 98.75 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 98.75 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 98.75 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 98.75 | |
| 3qcp_A | 470 | QSOX from trypanosoma brucei (tbqsox); ERV fold, t | 98.74 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 98.74 | |
| 1nrw_A | 288 | Hypothetical protein, haloacid dehalogenase-like h | 98.73 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 98.73 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 98.73 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 98.73 | |
| 3pct_A | 260 | Class C acid phosphatase; hydrolase, outer membran | 98.72 | |
| 3us3_A | 367 | Calsequestrin-1; calcium-binding protein; 1.74A {O | 98.71 |
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-30 Score=301.67 Aligned_cols=278 Identities=21% Similarity=0.292 Sum_probs=224.2
Q ss_pred CCCCCCCceEEEee-cCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEE-------eeCC
Q 001380 597 TSPLKFPGKLAIDI-LNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAY-------NAKK 668 (1089)
Q Consensus 597 ~~~l~~P~~vavd~-~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~-------d~~g 668 (1089)
...|..|.+|++|| .+++|||++..+++|.++|+.++.+.++...+. ..|++|.+|++ +++|
T Consensus 135 ~~~~~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~----------~~~~~p~~ia~~~~~~~~d~~G 204 (496)
T 3kya_A 135 CCGFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINT----------IPTNRIRSIAFNKKIEGYADEA 204 (496)
T ss_dssp CBCCCSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTT----------SSCSBEEEEEECCCBTTTBCTT
T ss_pred ccccCCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCc----------cccCCCcEEEEeecccccCCCC
Confidence 45688999999998 479999999999999999999888877765432 13779999999 9999
Q ss_pred CEEEEEECCC------CEEEEEECCC-CeE------EEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC
Q 001380 669 NLLYVADTEN------HALREIDFVN-DTV------RTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA 735 (1089)
Q Consensus 669 ~~lyVaD~~n------~~I~~~d~~~-g~v------~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~ 735 (1089)
+.|||+|..+ +.|..++... |.+ .+++ .+..|++++++|+++.||+++.
T Consensus 205 ~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~------------------~~~~p~giavdp~~g~LYvtd~ 266 (496)
T 3kya_A 205 EYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA------------------AYKQCNGATIHPINGELYFNSY 266 (496)
T ss_dssp CEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE------------------EESCCCCEEECTTTCCEEEEET
T ss_pred CEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec------------------cCCCceEEEEcCCCCeEEEEEC
Confidence 9999999876 4577886543 221 1221 2458999999998889999999
Q ss_pred CCcEEEEEECC-------CCeE------------EEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCe
Q 001380 736 GQHQIWEHSTV-------DGVT------------RAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSS 796 (1089)
Q Consensus 736 ~~~~I~~~~~~-------~g~~------------~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~ 796 (1089)
++++|+++|+. ++.+ ..+... ..-.+|.+|+++++|+.|||+|+.+++
T Consensus 267 ~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~-------------~~~~~p~~ia~~p~G~~lYvaD~~~h~ 333 (496)
T 3kya_A 267 EKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI-------------ADPSWEFQIFIHPTGKYAYFGVINNHY 333 (496)
T ss_dssp TTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC-------------SSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred CCCEEEEEecccccccccCceeecccccccccccceeEec-------------CCCCCceEEEEcCCCCEEEEEeCCCCE
Confidence 99999999987 5554 111100 112468999999999889999999999
Q ss_pred EEEEEcCCCC--e---EEEecCCCCCCCCccccCCCCCccccccccCce-EEEEc-------cCCcEEEEeCCCCEEEEE
Q 001380 797 IRALNLKTGG--S---RLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPL-GVYCA-------KNGQIYVADSYNHKIKKL 863 (1089)
Q Consensus 797 I~~~~~~~~~--~---~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~-gva~~-------~~G~lyVaD~~n~~I~~~ 863 (1089)
|++++.++.. + .+++|.. -..|..||.+..++|++|. +++++ .+|+|||||+.||+|++|
T Consensus 334 I~kid~dg~~~~~~~~~~~aG~~-------g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i 406 (496)
T 3kya_A 334 FMRSDYDEIKKEFITPYNFVGGY-------KQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKV 406 (496)
T ss_dssp EEEEEEETTTTEECCCEEEEEBT-------TBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEE
T ss_pred EEEEecCCCcceecccEEecCCC-------CCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEE
Confidence 9998876432 2 4566631 1235568899999999999 88887 678999999999999999
Q ss_pred eCCCCeEEEEeccCCC---------CCCCC-cccccccCCCceEEEccC-CcEEEEECCCCEEEEEeCCCC
Q 001380 864 DPASNRVSTLAGIGKA---------GFKDG-AALAAQLSEPAGIIEAQN-GNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 864 d~~~~~v~t~~g~g~~---------g~~~g-~~~~~~l~~P~gi~vd~~-G~lyVad~~n~~I~~~~~~~~ 923 (1089)
+++ |.++|++|.|.. |+.+| .+..++|+.|.||++|++ |+|||+|+.||||+++++++.
T Consensus 407 ~~~-G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 407 TPE-GIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp CTT-CBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred eCC-CCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence 975 699999998763 67777 688999999999999996 999999999999999999987
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-29 Score=292.28 Aligned_cols=272 Identities=17% Similarity=0.205 Sum_probs=214.9
Q ss_pred CCCCCCCceEEEee--cCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEE
Q 001380 597 TSPLKFPGKLAIDI--LNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVA 674 (1089)
Q Consensus 597 ~~~l~~P~~vavd~--~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVa 674 (1089)
++.|..|.+|++|+ .+|+|||+|.. ++|.++++.+..+..+... +..|.+|+++++|+ |||+
T Consensus 135 a~~~~~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~~~--------------~~~P~giavd~dG~-lyVa 198 (433)
T 4hw6_A 135 CGAFDNIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKTTN--------------IGQCADVNFTLNGD-MVVV 198 (433)
T ss_dssp CCCCSCCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEECCC--------------CSCEEEEEECTTCC-EEEE
T ss_pred hcccCCCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEeecC--------------CCCccEEEECCCCC-EEEE
Confidence 34789999999998 36999999998 9999999965555555432 56899999999999 9999
Q ss_pred ECCCC----EEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeE
Q 001380 675 DTENH----ALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVT 750 (1089)
Q Consensus 675 D~~n~----~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~ 750 (1089)
|..++ .+..++..++... ......+..|+++++++.++.|||++.++++|+++++.++.+
T Consensus 199 d~~~~~~~~gv~~~~~~~~~~~----------------~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~ 262 (433)
T 4hw6_A 199 DDQSSDTNTGIYLFTRASGFTE----------------RLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTL 262 (433)
T ss_dssp ECCSCTTSEEEEEECGGGTTCC----------------EEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCE
T ss_pred cCCCCcccceEEEEECCCCeec----------------cccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeE
Confidence 98653 3444443322210 001124679999999996669999999999999999987776
Q ss_pred -EEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCC--CC---eEEEecCCCCCCCCcccc
Q 001380 751 -RAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKT--GG---SRLLAGGDPIFPDNLFKF 824 (1089)
Q Consensus 751 -~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~--~~---~~~~~g~~~~~~~~l~~~ 824 (1089)
..+...+. ...+.+|+++++|++|||+|..+++|++++.+. +. ..+++|.. ...
T Consensus 263 ~~~~~~~~~-------------~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~-------g~~ 322 (433)
T 4hw6_A 263 TEEEVMMDT-------------KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQH-------SSP 322 (433)
T ss_dssp EEEEEECSC-------------CSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECT-------TCC
T ss_pred EEEEeccCC-------------CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecC-------CCC
Confidence 44432221 124668999999988999999999999998763 22 23555521 123
Q ss_pred CCCCCccccccccCceEEEE---------ccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCC---CCCCCC-ccccccc
Q 001380 825 GDRDGMGSEVLLQHPLGVYC---------AKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGK---AGFKDG-AALAAQL 891 (1089)
Q Consensus 825 g~~dg~~~~~~l~~P~gva~---------~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~---~g~~~g-~~~~~~l 891 (1089)
|..||.+..++|.+|.|+++ +.+|+|||||+.||+|++++++ |.+++++|.+. .|+.+| .+..++|
T Consensus 323 g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~-G~v~t~~G~g~~~~~G~~dG~~~~~~~~ 401 (433)
T 4hw6_A 323 GWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE-GRVTTYAGRGNSREWGYVDGELRSQALF 401 (433)
T ss_dssp CCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT-SEEEEEECCCTTCSSCCBCEETTTTCBC
T ss_pred ccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC-CCEEEEEeCCCCCccccCCCccccccEe
Confidence 55578888999999999999 8899999999999999999984 69999999876 677777 6778899
Q ss_pred CCCceEEEc-cCCcEEEEECCCCEEEEEeCC
Q 001380 892 SEPAGIIEA-QNGNLFIADTNNNIIRYLDLN 921 (1089)
Q Consensus 892 ~~P~gi~vd-~~G~lyVad~~n~~I~~~~~~ 921 (1089)
+.|.||+++ ++|+|||+|+.||+|++++++
T Consensus 402 ~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 402 NHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp SSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 999999999 789999999999999999875
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-28 Score=289.24 Aligned_cols=271 Identities=18% Similarity=0.266 Sum_probs=217.4
Q ss_pred CCCCCCCceEEEee-cCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEE
Q 001380 597 TSPLKFPGKLAIDI-LNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVAD 675 (1089)
Q Consensus 597 ~~~l~~P~~vavd~-~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD 675 (1089)
...|.+|.+|++|| .+++|||+|.. ++|.++++++..+..+... +..|.+|+++++|+.|||+|
T Consensus 133 ~~~~~~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~~~~~--------------~~~P~~ia~d~~G~~lyvad 197 (430)
T 3tc9_A 133 CGGFGGAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVSTVYSG--------------LSKVRTICWTHEADSMIITN 197 (430)
T ss_dssp CBCCSCCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEEEECC--------------CSCEEEEEECTTSSEEEEEE
T ss_pred ccCCCCCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEEEecC--------------CCCcceEEEeCCCCEEEEEe
Confidence 45689999999997 47999999998 9999999998777666542 45899999999999999999
Q ss_pred CCCC----EEEEEECCCCeE--EEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCe
Q 001380 676 TENH----ALREIDFVNDTV--RTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGV 749 (1089)
Q Consensus 676 ~~n~----~I~~~d~~~g~v--~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~ 749 (1089)
..++ .+..++.+++.. ..+. .+..|++++++|+++.|||+|.++++|+++++.++.
T Consensus 198 ~~~~~~~~~v~~~~~~g~~~~~~~l~------------------~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~ 259 (430)
T 3tc9_A 198 DQNNNDRPNNYILTRESGFKVITELT------------------KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE 259 (430)
T ss_dssp CCSCTTSEEEEEEEGGGTSCSEEEEE------------------ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE
T ss_pred CCCCcccceEEEEeCCCceeeeeeec------------------cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc
Confidence 8544 566677654332 2222 256899999999666999999999999999999887
Q ss_pred EEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCC-----eEEEecCCCCCCCCcccc
Q 001380 750 TRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGG-----SRLLAGGDPIFPDNLFKF 824 (1089)
Q Consensus 750 ~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~-----~~~~~g~~~~~~~~l~~~ 824 (1089)
...+...+ ...+|+||+++++|++|||+|..+++|++++.++.. ..++++.. ...
T Consensus 260 ~~~~~~~~-------------~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~-------g~~ 319 (430)
T 3tc9_A 260 TTPLFTIQ-------------DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQ-------GAK 319 (430)
T ss_dssp EEEEEECS-------------SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECT-------TCB
T ss_pred EEEEEEcC-------------CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccC-------CCC
Confidence 75443211 124799999999998899999999999999887431 33455421 123
Q ss_pred CCCCCccccccccCce-EEEEc--------cCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCC---CCCCCC-ccccccc
Q 001380 825 GDRDGMGSEVLLQHPL-GVYCA--------KNGQIYVADSYNHKIKKLDPASNRVSTLAGIGK---AGFKDG-AALAAQL 891 (1089)
Q Consensus 825 g~~dg~~~~~~l~~P~-gva~~--------~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~---~g~~~g-~~~~~~l 891 (1089)
|..+|.+..++|.+|. |++++ ++|+|||+|+.||+|++++++ |.+++++|.+. .|+.+| .+..++|
T Consensus 320 g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~-G~v~~~~g~g~~~~~G~~dG~~~~~~~~ 398 (430)
T 3tc9_A 320 DWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQ-GRVTTFAGRGSNGTSGYNDGDLRQEARF 398 (430)
T ss_dssp CCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTT-SEEEEEEECCTTSSSSCBCEETTTTCBC
T ss_pred CCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCC-CcEEEEEeCCCCCCCcccCCCchhhcEe
Confidence 4557777888999999 89984 568999999999999999975 68999998753 455566 5778899
Q ss_pred CCCceEEEcc-CCcEEEEECCCCEEEEEeCC
Q 001380 892 SEPAGIIEAQ-NGNLFIADTNNNIIRYLDLN 921 (1089)
Q Consensus 892 ~~P~gi~vd~-~G~lyVad~~n~~I~~~~~~ 921 (1089)
+.|.||++|+ +|+|||+|++||+|++++++
T Consensus 399 ~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 399 NHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp SSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 9999999998 68999999999999999875
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.8e-28 Score=280.65 Aligned_cols=277 Identities=19% Similarity=0.227 Sum_probs=223.9
Q ss_pred CCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC
Q 001380 598 SPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE 677 (1089)
Q Consensus 598 ~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~ 677 (1089)
..|..|.+|++|+ +|+|||+|..+++|.++++++..+.++... ...|. ++++++|+.||++|..
T Consensus 128 a~~~~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g~~~~~~~~--------------~~~~~-ia~~~~g~~l~~~d~~ 191 (409)
T 3hrp_A 128 AKFKYMWGIAAVG-NNTVLAYQRDDPRVRLISVDDNKVTTVHPG--------------FKGGK-PAVTKDKQRVYSIGWE 191 (409)
T ss_dssp CCCCCEEEEEECS-TTEEEEEETTTTEEEEEETTTTEEEEEEET--------------CCBCB-CEECTTSSEEEEEBSS
T ss_pred cccCCceEEEEeC-CCCEEEEecCCCcEEEEECCCCEEEEeecc--------------CCCCc-eeEecCCCcEEEEecC
Confidence 4789999999996 889999999999999999997666665443 13577 9999999999999985
Q ss_pred C-CEEEEEECCCCeE-EEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeC
Q 001380 678 N-HALREIDFVNDTV-RTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSG 755 (1089)
Q Consensus 678 n-~~I~~~d~~~g~v-~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g 755 (1089)
. ++|++++..++.. ..+..... ..+..|++++++|+++.||+++. +++|+++|+.++....+.+
T Consensus 192 ~~~~I~~~d~~~~~~~~~~g~~~~-------------~~~~~p~~iav~p~~g~lyv~d~-~~~I~~~d~~~~~~~~~~~ 257 (409)
T 3hrp_A 192 GTHTVYVYMKASGWAPTRIGQLGS-------------TFSGKIGAVALDETEEWLYFVDS-NKNFGRFNVKTQEVTLIKQ 257 (409)
T ss_dssp TTCEEEEEEGGGTTCEEEEEECCT-------------TSCSCCCBCEECTTSSEEEEECT-TCEEEEEETTTCCEEEEEE
T ss_pred CCceEEEEEcCCCceeEEeeeccc-------------hhcCCcEEEEEeCCCCeEEEEEC-CCcEEEEECCCCCEEEEec
Confidence 5 4999999877654 33311110 12468999999997679999775 7899999999888777765
Q ss_pred CCccccCCCCCCCCccccCCc-eEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccc
Q 001380 756 DGYERNLNGSSSLNTSFAQPS-GISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEV 834 (1089)
Q Consensus 756 ~g~~~~~~g~~~~~~~~~~P~-glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~ 834 (1089)
.+... .....|. +|++++++++|||+|..+++|++++.++ ...+++|.. ...|..+|.+..+
T Consensus 258 ~~~~g---------~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g-~~~~~~g~~-------~~~g~~dg~~~~~ 320 (409)
T 3hrp_A 258 LELSG---------SLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG-ECEWFCGSA-------TQKTVQDGLREEA 320 (409)
T ss_dssp CCCCS---------CCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC-CEEEEEECT-------TCCSCBCEEGGGC
T ss_pred ccccC---------CCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC-CEEEEEeCC-------CCCCcCCCccccc
Confidence 43211 1112366 9999997669999999999999999875 466666642 1234566777888
Q ss_pred cccCceEEEEccCCcEEEEeC-CCCEEEEEeCCCCeEEEEecc-CCCCCCCCcccccccCCCceEEEccCCcEEEEECCC
Q 001380 835 LLQHPLGVYCAKNGQIYVADS-YNHKIKKLDPASNRVSTLAGI-GKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNN 912 (1089)
Q Consensus 835 ~l~~P~gva~~~~G~lyVaD~-~n~~I~~~d~~~~~v~t~~g~-g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n 912 (1089)
+|.+|.||+++++|+|||+|+ .+++|+++++.++.+.+++|. +..|+.+|.+..++|+.|.||+++++|+|||+|+.|
T Consensus 321 ~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n 400 (409)
T 3hrp_A 321 LFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWG 400 (409)
T ss_dssp BCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTT
T ss_pred EeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCC
Confidence 999999999999999999999 999999999777899999987 566778887788899999999999999999999999
Q ss_pred CEEEEEeCC
Q 001380 913 NIIRYLDLN 921 (1089)
Q Consensus 913 ~~I~~~~~~ 921 (1089)
++|++++++
T Consensus 401 ~~Ir~i~~e 409 (409)
T 3hrp_A 401 KAIRKYAVE 409 (409)
T ss_dssp CEEEEEEEC
T ss_pred CeEEEEEeC
Confidence 999999863
|
| >3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.8e-27 Score=247.69 Aligned_cols=206 Identities=31% Similarity=0.352 Sum_probs=178.5
Q ss_pred ceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHh
Q 001380 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDKY 158 (1089)
Q Consensus 79 ~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (1089)
+|+|+||+||||+|+...+..++.++++++|++.+.+.+..+.+.................. ..+.....+.+.+...+
T Consensus 1 IkAViFD~DGTL~ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 79 (216)
T 3kbb_A 1 MEAVIFDMDGVLMDTEPLYFEAYRRVAESYGKPYTEDLHRRIMGVPEREGLPILMEALEIKD-SLENFKKRVHEEKKRVF 79 (216)
T ss_dssp CCEEEEESBTTTBCCGGGHHHHHHHHHHHTTCCCCHHHHHHHTTSCHHHHHHHHHHHTTCCS-CHHHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCcccCCHHHHHHHHHHHHHHcCCCCCHHHHHHHhccchhhhhhhhhhcccchh-hHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999988888888888877776666555443 55556666666555444
Q ss_pred cCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCC
Q 001380 159 AKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVP 238 (1089)
Q Consensus 159 ~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~ 238 (1089)
.... .++||+.++++.|+++|++++|+||+.+..+...++.+|+. .+||.++++++++..||+|++|+.+++++|++
T Consensus 80 ~~~~--~~~pg~~~~l~~L~~~g~~~~i~tn~~~~~~~~~l~~~~l~-~~fd~~~~~~~~~~~KP~p~~~~~a~~~lg~~ 156 (216)
T 3kbb_A 80 SELL--KENPGVREALEFVKSKRIKLALATSTPQREALERLRRLDLE-KYFDVMVFGDQVKNGKPDPEIYLLVLERLNVV 156 (216)
T ss_dssp HHHC--CBCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCG-GGCSEEECGGGSSSCTTSTHHHHHHHHHHTCC
T ss_pred HHhc--ccCccHHHHHHHHHHcCCCcccccCCcHHHHHHHHHhcCCC-ccccccccccccCCCcccHHHHHHHHHhhCCC
Confidence 3333 68999999999999999999999999999999999999996 99999999999999999999999999999999
Q ss_pred CCcEEEEcCChhhHHHHHHcCCeEEE-EcCCC-CHHHHhhcCCcEEecCcccC
Q 001380 239 TSECIVIEDALAGVQAAKAAQMRCIA-VTTTL-SEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 239 p~~~v~VGD~~~Di~aA~~aG~~~i~-V~~g~-~~~~l~~~~~d~vi~dl~el 289 (1089)
|++|+||||+.+|+++|+++||++|+ |.+|. ..+.+.+++++.+. ++.++
T Consensus 157 p~e~l~VgDs~~Di~aA~~aG~~~i~~v~~g~~~~~~l~~~~~~~i~-~~~el 208 (216)
T 3kbb_A 157 PEKVVVFEDSKSGVEAAKSAGIERIYGVVHSLNDGKALLEAGAVALV-KPEEI 208 (216)
T ss_dssp GGGEEEEECSHHHHHHHHHTTCCCEEEECCSSSCCHHHHHTTCSEEE-CGGGH
T ss_pred ccceEEEecCHHHHHHHHHcCCcEEEEecCCCCCHHHHHhCCCcEEC-CHHHH
Confidence 99999999999999999999999985 78876 67788888888776 45554
|
| >4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative phosphoglucomutase, enzyme function initiative structural genomics, isomerase; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.2e-27 Score=254.16 Aligned_cols=212 Identities=26% Similarity=0.384 Sum_probs=174.7
Q ss_pred CCCCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCC-CHH---HHHHHH
Q 001380 75 KWGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGF-DSE---AAKKRF 150 (1089)
Q Consensus 75 ~~~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~ 150 (1089)
|+|++|+||||+||||+|+...+..++.++++++|++.+.+.+..+.+.+.......+....+.... ... ....+.
T Consensus 1 M~MkiKaViFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (243)
T 4g9b_A 1 MVMKLQGVIFDLDGVITDTAHLHFQAWQQIAAEIGISIDAQFNESLKGISRDESLRRILQHGGKEGDFNSQERAQLAYRK 80 (243)
T ss_dssp -CCCCCEEEECSBTTTBCCHHHHHHHHHHHHHHTTCCCCTTGGGGGTTCCHHHHHHHHHHHTTCGGGCCHHHHHHHHHHH
T ss_pred CCccCcEEEEcCCCcccCCHHHHHHHHHHHHHHcCCCCCHHHHHHHcCCCHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999888888888888888887777766554321 221 122222
Q ss_pred HHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHH
Q 001380 151 FEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLS 230 (1089)
Q Consensus 151 ~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~ 230 (1089)
...+...+.......++||+.++++.|+++|++++++||.. ..+..++.+|+. .+||.++++++++.+||+|++|..
T Consensus 81 ~~~~~~~~~~~~~~~~~pg~~~ll~~L~~~g~~i~i~t~~~--~~~~~l~~~gl~-~~fd~i~~~~~~~~~KP~p~~~~~ 157 (243)
T 4g9b_A 81 NLLYVHSLRELTVNAVLPGIRSLLADLRAQQISVGLASVSL--NAPTILAALELR-EFFTFCADASQLKNSKPDPEIFLA 157 (243)
T ss_dssp HHHHHHHHHTCCGGGBCTTHHHHHHHHHHTTCEEEECCCCT--THHHHHHHTTCG-GGCSEECCGGGCSSCTTSTHHHHH
T ss_pred HHHHHHHHHhcccccccccHHHHHHhhhcccccceeccccc--chhhhhhhhhhc-cccccccccccccCCCCcHHHHHH
Confidence 23333444333334689999999999999999999999964 357789999996 999999999999999999999999
Q ss_pred HHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHh
Q 001380 231 ASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILT 296 (1089)
Q Consensus 231 ~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~ 296 (1089)
+++++|++|++|+||||+.+||++|+++||++|+|.+|.+ +++.++++..++.+.++-.
T Consensus 158 a~~~lg~~p~e~l~VgDs~~di~aA~~aG~~~I~V~~g~~-------~ad~~~~~~~~l~~~~l~~ 216 (243)
T 4g9b_A 158 ACAGLGVPPQACIGIEDAQAGIDAINASGMRSVGIGAGLT-------GAQLLLPSTESLTWPRLSA 216 (243)
T ss_dssp HHHHHTSCGGGEEEEESSHHHHHHHHHHTCEEEEESTTCC-------SCSEEESSGGGCCHHHHHH
T ss_pred HHHHcCCChHHEEEEcCCHHHHHHHHHcCCEEEEECCCCC-------cHHHhcCChhhcCHHHHHH
Confidence 9999999999999999999999999999999999999853 5778888888887665544
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.6e-26 Score=257.90 Aligned_cols=274 Identities=22% Similarity=0.331 Sum_probs=208.8
Q ss_pred CCCCCCceEEEeecCCeEEEEeCCCC------------------------EEEEEeCC-CCEEEEEecCCCCCCCCCCCC
Q 001380 598 SPLKFPGKLAIDILNNRLFISDSNHN------------------------RIVVTDLD-GNFIVQIGSSGEEGLRDGSFD 652 (1089)
Q Consensus 598 ~~l~~P~~vavd~~~g~L~vsd~~~~------------------------~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~ 652 (1089)
..|..|.+|++|+ +|++||++.+++ +|+++|.+ |+++..++..
T Consensus 21 ~~l~~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~----------- 88 (329)
T 3fvz_A 21 LLPGQVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKN----------- 88 (329)
T ss_dssp CCCSCEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTT-----------
T ss_pred eecCCceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCC-----------
Confidence 4678899999997 899999999884 69999986 8887665532
Q ss_pred ccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCC--eEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEE
Q 001380 653 DATFNRPQGLAYNAKKNLLYVADTENHALREIDFVND--TVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKV 730 (1089)
Q Consensus 653 ~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g--~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~l 730 (1089)
.|..|.||+++++|+ |||+|..+++|+++++++. .+.++...+..+.. ...+..|++|+++++++.|
T Consensus 89 --~~~~p~gia~d~~g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~--------~~~~~~P~~ia~~~~~g~l 157 (329)
T 3fvz_A 89 --LFYLPHGLSIDTDGN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSD--------QNHFCQPTDVAVEPSTGAV 157 (329)
T ss_dssp --TCSSEEEEEECTTSC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCS--------TTCCSSEEEEEECTTTCCE
T ss_pred --ccCCceEEEECCCCC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCC--------ccccCCCcEEEEeCCCCeE
Confidence 377999999999999 9999999999999999876 57777654443321 2357899999999955599
Q ss_pred EEEEC-CCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCe-E
Q 001380 731 YIAMA-GQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGS-R 808 (1089)
Q Consensus 731 yvad~-~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~-~ 808 (1089)
||++. ++++|++|+..+..+..+...+.. ..+....+..|.||++++++++|||+|..+++|+++++++|.. .
T Consensus 158 yv~d~~~~~~I~~~~~~g~~~~~~~~~g~~-----~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~ 232 (329)
T 3fvz_A 158 FVSDGYCNSRIVQFSPSGKFVTQWGEESSG-----SSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVR 232 (329)
T ss_dssp EEEECSSCCEEEEECTTSCEEEEECEECCS-----SSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE
T ss_pred EEEeCCCCCeEEEEcCCCCEEEEeccCCCC-----CCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEE
Confidence 99996 799999999776666666543321 1122356889999999999559999999999999999985544 3
Q ss_pred EEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccc
Q 001380 809 LLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALA 888 (1089)
Q Consensus 809 ~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~ 888 (1089)
.+.... ++ ++ ......+| |++++.+|++||+|..+++|+++|..++.+....+.+.
T Consensus 233 ~~~~~~---------~~--~~--~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~---------- 288 (329)
T 3fvz_A 233 EIKHAS---------FG--RN--VFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVR---------- 288 (329)
T ss_dssp EECCTT---------TT--TC--EEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSS----------
T ss_pred EEeccc---------cC--CC--cceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCC----------
Confidence 332110 01 00 00111234 66666689999999999999999977676655543221
Q ss_pred cccCCCceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 889 AQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 889 ~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
..+..|.+|+++++|+|||+|..+++|+++++.+.
T Consensus 289 ~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 289 KHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp SCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred CccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 26788999999999999999999999999998764
|
| >2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola haloacid dehalogenase-like, PSI; 1.74A {Streptococcus pneumoniae} SCOP: c.108.1.6 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.4e-26 Score=240.34 Aligned_cols=201 Identities=19% Similarity=0.273 Sum_probs=165.4
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcCCCC-CHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEV-TVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLD 156 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1089)
++|+|+||+||||+|+...+..++.++++++|+.. ..+.+..+.+.+.......+ .......+..+.+.+.+..
T Consensus 3 ~~k~viFDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 77 (210)
T 2ah5_A 3 SITAIFFDLDGTLVDSSIGIHNAFTYTFKELGVPSPDAKTIRGFMGPPLESSFATC-----LSKDQISEAVQIYRSYYKA 77 (210)
T ss_dssp TCCEEEECSBTTTEECHHHHHHHHHHHHHHHTCCCCCHHHHHHTSSSCHHHHHHTT-----SCGGGHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCcCccCHHHHHHHHHHHHHHcCCCCCCHHHHHHHcCccHHHHHHHH-----cCHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999875 45666667676654433222 1211233444444444443
Q ss_pred HhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcC
Q 001380 157 KYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILN 236 (1089)
Q Consensus 157 ~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lg 236 (1089)
.... ...++||+.++|+.|++ |++++|+||+.+..++..++++|+. .+|+.+++++ ...||+|++|+++++++|
T Consensus 78 ~~~~--~~~~~~g~~~~l~~L~~-~~~l~i~T~~~~~~~~~~l~~~gl~-~~f~~i~~~~--~~~Kp~p~~~~~~~~~lg 151 (210)
T 2ah5_A 78 KGIY--EAQLFPQIIDLLEELSS-SYPLYITTTKDTSTAQDMAKNLEIH-HFFDGIYGSS--PEAPHKADVIHQALQTHQ 151 (210)
T ss_dssp TGGG--SCEECTTHHHHHHHHHT-TSCEEEEEEEEHHHHHHHHHHTTCG-GGCSEEEEEC--SSCCSHHHHHHHHHHHTT
T ss_pred hccC--CCCCCCCHHHHHHHHHc-CCeEEEEeCCCHHHHHHHHHhcCch-hheeeeecCC--CCCCCChHHHHHHHHHcC
Confidence 3221 23689999999999999 9999999999998999999999996 9999999988 778999999999999999
Q ss_pred CCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC-CHHHHhhcCCcEEecCcccC
Q 001380 237 VPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL-SEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 237 v~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~-~~~~l~~~~~d~vi~dl~el 289 (1089)
++|++|+||||+.+|+++|+++|+++++|.+|. ..+++....|++++.++.++
T Consensus 152 ~~p~~~~~vgDs~~Di~~a~~aG~~~i~v~~~~~~~~~l~~~~a~~v~~~~~el 205 (210)
T 2ah5_A 152 LAPEQAIIIGDTKFDMLGARETGIQKLAITWGFGEQADLLNYQPDYIAHKPLEV 205 (210)
T ss_dssp CCGGGEEEEESSHHHHHHHHHHTCEEEEESSSSSCHHHHHTTCCSEEESSTTHH
T ss_pred CCcccEEEECCCHHHHHHHHHCCCcEEEEcCCCCCHHHHHhCCCCEEECCHHHH
Confidence 999999999999999999999999999999987 46677767899999999887
|
| >4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-25 Score=244.93 Aligned_cols=214 Identities=26% Similarity=0.329 Sum_probs=173.7
Q ss_pred CCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHH----HHHHHHHH
Q 001380 77 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSE----AAKKRFFE 152 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 152 (1089)
.|+|+||||+||||+|+...+..++.++++++|++.+.+....+.+.........+...........+ ...+++.+
T Consensus 24 ~MIKaViFDlDGTLvDs~~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (250)
T 4gib_A 24 AMIEAFIFDLDGVITDTAYYHYMAWRKLAHKVGIDIDTKFNESLKGISRMESLDRILEFGNKKYSFSEEEKVRMAEEKNN 103 (250)
T ss_dssp CCCCEEEECTBTTTBCCHHHHHHHHHHHHHTTTCCCCTTGGGGTTTCCHHHHHHHHHHHTTCTTTSCHHHHHHHHHHHHH
T ss_pred chhheeeecCCCcccCCHHHHHHHHHHHHHHcCCCCCHHHHHHHhCcchHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999887777778888877777666654433222222 22333334
Q ss_pred HHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHH
Q 001380 153 IYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSAS 232 (1089)
Q Consensus 153 ~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l 232 (1089)
.+...........++||+.++++.|+++|+++++.|+. ......++++|+. .+||.++++++++..||+|++|..++
T Consensus 104 ~~~~~~~~~~~~~~~p~~~~ll~~Lk~~g~~i~i~~~~--~~~~~~L~~~gl~-~~Fd~i~~~~~~~~~KP~p~~~~~a~ 180 (250)
T 4gib_A 104 YYVSLIDEITSNDILPGIESLLIDVKSNNIKIGLSSAS--KNAINVLNHLGIS-DKFDFIADAGKCKNNKPHPEIFLMSA 180 (250)
T ss_dssp HHHHHHTTCCGGGSCTTHHHHHHHHHHTTCEEEECCSC--TTHHHHHHHHTCG-GGCSEECCGGGCCSCTTSSHHHHHHH
T ss_pred HHHHHHhhccccccchhHHHHHHHHHhccccccccccc--chhhhHhhhcccc-cccceeecccccCCCCCcHHHHHHHH
Confidence 44444444334468999999999999999999987775 3456789999996 99999999999999999999999999
Q ss_pred HHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhcc
Q 001380 233 KILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTGG 298 (1089)
Q Consensus 233 ~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~~ 298 (1089)
+++|++|++|+||||+.+|+++|+++||++|+|.+. +.+ ..||++++++.||.+..|.+..
T Consensus 181 ~~lg~~p~e~l~VGDs~~Di~aA~~aG~~~i~v~~~---~~~--~~ad~vi~~l~eL~~~~i~~~~ 241 (250)
T 4gib_A 181 KGLNVNPQNCIGIEDASAGIDAINSANMFSVGVGNY---ENL--KKANLVVDSTNQLKFEYIQEKY 241 (250)
T ss_dssp HHHTCCGGGEEEEESSHHHHHHHHHTTCEEEEESCT---TTT--TTSSEEESSGGGCCHHHHHHHH
T ss_pred HHhCCChHHeEEECCCHHHHHHHHHcCCEEEEECCh---hHh--ccCCEEECChHhCCHHHHHHHH
Confidence 999999999999999999999999999999999643 222 3689999999999876665543
|
| >4ex6_A ALNB; modified rossman fold, phosphatase, magnesium binding, hydro; 1.25A {Streptomyces SP} PDB: 4ex7_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-25 Score=240.56 Aligned_cols=217 Identities=23% Similarity=0.356 Sum_probs=183.8
Q ss_pred CCCCCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 001380 74 SKWGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEI 153 (1089)
Q Consensus 74 ~~~~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (1089)
....++|+|+||+||||+++...+..++.++++++|.....+.+....+.........+..... ...........+.+.
T Consensus 14 ~~~~~ik~i~fDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 92 (237)
T 4ex6_A 14 APAAADRGVILDLDGTLADTPAAIATITAEVLAAMGTAVSRGAILSTVGRPLPASLAGLLGVPV-EDPRVAEATEEYGRR 92 (237)
T ss_dssp ---CCCEEEEECSBTTTBCCHHHHHHHHHHHHHHTTCCCCHHHHHHHTTSCHHHHHHHHHTSCT-TSHHHHHHHHHHHHH
T ss_pred CCcccCCEEEEcCCCCCcCCHHHHHHHHHHHHHHcCCCCCHHHHHHhcCccHHHHHHHHhCCCC-CHHHHHHHHHHHHHH
Confidence 3456799999999999999999999999999999997788888888888888877776654332 121334444555555
Q ss_pred HHHHhc--CCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHH
Q 001380 154 YLDKYA--KPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSA 231 (1089)
Q Consensus 154 ~~~~~~--~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~ 231 (1089)
+.+.+. .. ..++||+.++|+.|+++|++++|+||.....++..++.+|+. .+|+.+++++++..+||++++|+.+
T Consensus 93 ~~~~~~~~~~--~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~-~~f~~~~~~~~~~~~kp~~~~~~~~ 169 (237)
T 4ex6_A 93 FGAHVRAAGP--RLLYPGVLEGLDRLSAAGFRLAMATSKVEKAARAIAELTGLD-TRLTVIAGDDSVERGKPHPDMALHV 169 (237)
T ss_dssp HHHHHHHHGG--GGBCTTHHHHHHHHHHTTEEEEEECSSCHHHHHHHHHHHTGG-GTCSEEECTTTSSSCTTSSHHHHHH
T ss_pred HHHhcccccC--CccCCCHHHHHHHHHhCCCcEEEEcCCChHHHHHHHHHcCch-hheeeEEeCCCCCCCCCCHHHHHHH
Confidence 555443 22 278999999999999999999999999999999999999996 9999999999999999999999999
Q ss_pred HHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC-CHHHHhhcCCcEEecCcccCCHHHHHh
Q 001380 232 SKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL-SEERLKEASPSLIRKEIGSVSLNDILT 296 (1089)
Q Consensus 232 l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~-~~~~l~~~~~d~vi~dl~el~i~~ll~ 296 (1089)
++++|++|++|+||||+.+|+.+|+++|+.+++|.+|. ..+++.+..|++++.++.+| .++|.
T Consensus 170 ~~~lg~~~~~~i~vGD~~~Di~~a~~aG~~~i~v~~g~~~~~~~~~~~ad~v~~~~~el--~~~l~ 233 (237)
T 4ex6_A 170 ARGLGIPPERCVVIGDGVPDAEMGRAAGMTVIGVSYGVSGPDELMRAGADTVVDSFPAA--VTAVL 233 (237)
T ss_dssp HHHHTCCGGGEEEEESSHHHHHHHHHTTCEEEEESSSSSCHHHHHHTTCSEEESSHHHH--HHHHH
T ss_pred HHHcCCCHHHeEEEcCCHHHHHHHHHCCCeEEEEecCCCCHHHHHhcCCCEEECCHHHH--HHHHH
Confidence 99999999999999999999999999999999999986 66778878999999999988 55654
|
| >2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-25 Score=240.11 Aligned_cols=208 Identities=27% Similarity=0.372 Sum_probs=169.3
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcCCC--CCHHhHhhhcCCCHHHHHHHHHhhc-----------C------C
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVE--VTVEDFLPFMGTGEANFLGGVASVK-----------G------V 138 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----------~------~ 138 (1089)
++|+|+||+||||+|+...+..++.++++++|+. .+.+.+..+.+.+.......+.... + .
T Consensus 3 ~~k~viFDlDGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (240)
T 2hi0_A 3 KYKAAIFDMDGTILDTSADLTSALNYAFEQTGHRHDFTVEDIKNFFGSGVVVAVTRALAYEAGSSRESLVAFGTKDEQIP 82 (240)
T ss_dssp SCSEEEECSBTTTEECHHHHHHHHHHHHHHTTSCCCCCHHHHHHHCSSCHHHHHHHHHHHHTTCCHHHHTTTTSTTCCCC
T ss_pred cccEEEEecCCCCccCHHHHHHHHHHHHHHcCCCCCCCHHHHHHhcCccHHHHHHHHHHhcccccccccccccccccccC
Confidence 4799999999999999999999999999999987 6777788888887666555543100 0 0
Q ss_pred CCCCHH---HHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEc
Q 001380 139 KGFDSE---AAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSA 215 (1089)
Q Consensus 139 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~ 215 (1089)
.....+ +..+.+.+.|...... ...++||+.++|+.|+++|++++|+||.....++..++++|+ . +|+.++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l-~-~f~~~~~~ 158 (240)
T 2hi0_A 83 EAVTQTEVNRVLEVFKPYYADHCQI--KTGPFPGILDLMKNLRQKGVKLAVVSNKPNEAVQVLVEELFP-G-SFDFALGE 158 (240)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTSSS--SCEECTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHST-T-TCSEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhhh--cCCcCCCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC-c-ceeEEEec
Confidence 011211 2222333333332222 347899999999999999999999999999999999999998 4 89999999
Q ss_pred CCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC-CHHHHhhcCCcEEecCcccC
Q 001380 216 DAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL-SEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 216 ~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~-~~~~l~~~~~d~vi~dl~el 289 (1089)
+++...||+|++|.++++++|++|++|+||||+.+|+++|+++|+.+++|.+|. ..+++....|++++.++.++
T Consensus 159 ~~~~~~Kp~p~~~~~~~~~l~~~~~~~~~vGDs~~Di~~a~~aG~~~v~v~~~~~~~~~~~~~~a~~~~~~~~el 233 (240)
T 2hi0_A 159 KSGIRRKPAPDMTSECVKVLGVPRDKCVYIGDSEIDIQTARNSEMDEIAVNWGFRSVPFLQKHGATVIVDTAEKL 233 (240)
T ss_dssp CTTSCCTTSSHHHHHHHHHHTCCGGGEEEEESSHHHHHHHHHTTCEEEEESSSSSCHHHHHHTTCCCEECSHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHHCCCeEEEECCCCCchhHHHhcCCCEEECCHHHH
Confidence 999999999999999999999999999999999999999999999999999987 55666667899999999887
|
| >3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW YORK research center for structural genomics; HET: TLA; 1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A 3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A 3quc_A 3qub_A 3qu4_A | Back alignment and structure |
|---|
Probab=99.93 E-value=7.4e-25 Score=236.97 Aligned_cols=217 Identities=28% Similarity=0.344 Sum_probs=179.3
Q ss_pred CCCCCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHh-hcCCCCCCHHHHHHHHHH
Q 001380 74 SKWGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVAS-VKGVKGFDSEAAKKRFFE 152 (1089)
Q Consensus 74 ~~~~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 152 (1089)
.+++++|+|+||+||||+++...+..++.++++++|+....+.+....+.........+.. ..+... .. +....+.+
T Consensus 19 ~~m~~~k~i~fDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~ 96 (243)
T 3qxg_A 19 HMRKKLKAVLFDMDGVLFNSMPYHSEAWHQVMKTHGLDLSREEAYMHEGRTGASTINIVFQRELGKEA-TQ-EEIESIYH 96 (243)
T ss_dssp ---CCCCEEEECSBTTTBCCHHHHHHHHHHHHHHTTCCCCHHHHHHTTTSCHHHHHHHHHHHHHSSCC-CH-HHHHHHHH
T ss_pred cccccCCEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHHHHhCCCC-CH-HHHHHHHH
Confidence 3456789999999999999999999999999999999988888777777776655554443 244332 22 33334444
Q ss_pred HHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCc--cEEEEcCCccCCCCCHHHHHH
Q 001380 153 IYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMF--DAIVSADAFENLKPAPDIFLS 230 (1089)
Q Consensus 153 ~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~f--d~i~~~~~~~~~KP~~~~~~~ 230 (1089)
.+.+.+.......++||+.++|+.|+++|++++|+||.....+...++. ++. .+| |.+++++++...||++++|+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~-~l~-~~f~~d~i~~~~~~~~~kp~~~~~~~ 174 (243)
T 3qxg_A 97 EKSILFNSYPEAERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLERLEH-NFP-GMFHKELMVTAFDVKYGKPNPEPYLM 174 (243)
T ss_dssp HHHHHHHTSSCCCBCTTHHHHHHHHHHTTCEEEEECCCCCHHHHTTHHH-HST-TTCCGGGEECTTTCSSCTTSSHHHHH
T ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHH-hHH-HhcCcceEEeHHhCCCCCCChHHHHH
Confidence 4444443333457899999999999999999999999998888999999 996 999 999999999999999999999
Q ss_pred HHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC-CHHHHhhcCCcEEecCcccCCHHHHHh
Q 001380 231 ASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL-SEERLKEASPSLIRKEIGSVSLNDILT 296 (1089)
Q Consensus 231 ~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~-~~~~l~~~~~d~vi~dl~el~i~~ll~ 296 (1089)
+++++|++|++|++|||+.+|+++|+++|+.+++|.++. ..+++....|+++++++.+| .++|.
T Consensus 175 ~~~~lg~~~~~~i~vGD~~~Di~~a~~aG~~~i~v~~~~~~~~~l~~~~ad~v~~s~~el--~~~l~ 239 (243)
T 3qxg_A 175 ALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGPLDGQVLLDAGADLLFPSMQTL--CDSWD 239 (243)
T ss_dssp HHHHTTCCGGGEEEEECSHHHHHHHHHTTCEEEEECCSSSCHHHHHHTTCSEEESCHHHH--HHHHH
T ss_pred HHHHcCCCHHHeEEEeCCHHHHHHHHHCCCEEEEEeCCCCCHHHHHhcCCCEEECCHHHH--HHHHH
Confidence 999999999999999999999999999999999999987 66777778999999999998 55554
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.6e-24 Score=249.14 Aligned_cols=259 Identities=20% Similarity=0.334 Sum_probs=193.4
Q ss_pred CCCCCCCCCCC------ccccCCcceeEEee-CCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccc
Q 001380 642 GEEGLRDGSFD------DATFNRPQGLAYNA-KKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQL 714 (1089)
Q Consensus 642 g~~g~~dG~~~------~~~f~~P~gla~d~-~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~ 714 (1089)
+..++.||++. .+.|..|.+|++|| +++.|||++..+++|++||++++.++++...+.. .
T Consensus 118 g~~~~~dG~~~~~~~~~~~~~~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~-------------~ 184 (496)
T 3kya_A 118 DDQGWRDGPFDGPEGVKCCGFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTI-------------P 184 (496)
T ss_dssp SCCCCBCEESSSSTTTSCBCCCSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTS-------------S
T ss_pred CceeccCCcccccccccccccCCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCcc-------------c
Confidence 45567899885 67888999999998 3556999999999999999999999999865431 2
Q ss_pred cCCceeEEE-------ecCCCEEEEEECCC------cEEEEEECCC-CeEEEEeCCCccccCCCCCCCCccccCCceEEE
Q 001380 715 LNSPWDVCY-------KPINEKVYIAMAGQ------HQIWEHSTVD-GVTRAFSGDGYERNLNGSSSLNTSFAQPSGISL 780 (1089)
Q Consensus 715 l~~P~~la~-------~~~g~~lyvad~~~------~~I~~~~~~~-g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav 780 (1089)
++.|++|++ +++|+.|||++..+ +.|..++... |... .. .++ ..-+.+.+|+|+++
T Consensus 185 ~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~---~~-----~~~--~~v~~~~~p~giav 254 (496)
T 3kya_A 185 TNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFD---DR-----SDI--QLIAAYKQCNGATI 254 (496)
T ss_dssp CSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCS---TT-----SCE--EEEEEESCCCCEEE
T ss_pred cCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCcee---ec-----ccc--eeeccCCCceEEEE
Confidence 568999999 99998899999886 3477776433 2110 00 000 00124678999999
Q ss_pred cCCCCEEEEEeCCCCeEEEEEcC-------CCCeE-EEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EE
Q 001380 781 SPDFMEIYVADSESSSIRALNLK-------TGGSR-LLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IY 851 (1089)
Q Consensus 781 ~~~g~~lyvad~~~~~I~~~~~~-------~~~~~-~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-ly 851 (1089)
++++++||++|..+++|++++++ ++... ............++..+. -..|.+|+++++|+ ||
T Consensus 255 dp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~---------~~~p~~ia~~p~G~~lY 325 (496)
T 3kya_A 255 HPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIAD---------PSWEFQIFIHPTGKYAY 325 (496)
T ss_dssp CTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSS---------SSCCEEEEECTTSSEEE
T ss_pred cCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCC---------CCCceEEEEcCCCCEEE
Confidence 99777999999999999999987 44430 000000000000111111 23689999999998 89
Q ss_pred EEeCCCCEEEEEeCC--CCeE---EEEecc-CCCCCCCCcccccccCCCc-eEEEc-------cCCcEEEEECCCCEEEE
Q 001380 852 VADSYNHKIKKLDPA--SNRV---STLAGI-GKAGFKDGAALAAQLSEPA-GIIEA-------QNGNLFIADTNNNIIRY 917 (1089)
Q Consensus 852 VaD~~n~~I~~~d~~--~~~v---~t~~g~-g~~g~~~g~~~~~~l~~P~-gi~vd-------~~G~lyVad~~n~~I~~ 917 (1089)
|+|+.+|+|++++.+ ++.+ ++++|. |..|+.+|.+..++|+.|. |++++ .+|+|||||+.||||++
T Consensus 326 vaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~ 405 (496)
T 3kya_A 326 FGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRK 405 (496)
T ss_dssp EEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEE
T ss_pred EEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEE
Confidence 999999999997654 4444 688887 7888989999999999999 88997 67899999999999999
Q ss_pred EeCCCCCceEEEEeeccc
Q 001380 918 LDLNKEEPELQTLELKGV 935 (1089)
Q Consensus 918 ~~~~~~~~~~~~l~~~~~ 935 (1089)
|++++ .++++.+.|.
T Consensus 406 i~~~G---~v~TiaG~g~ 420 (496)
T 3kya_A 406 VTPEG---IVSTYAGRGA 420 (496)
T ss_dssp ECTTC---BEEEEEESCT
T ss_pred EeCCC---CEEEEecccc
Confidence 99766 4888987653
|
| >3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=6.3e-25 Score=234.29 Aligned_cols=212 Identities=22% Similarity=0.268 Sum_probs=176.7
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcCCCC-CHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEV-TVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLD 156 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1089)
|+|+|+||+||||+++...+..++.++++++|... ..+.+....+........... ++. . .....+.+.+.+
T Consensus 3 m~k~i~fDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~---~~~---~-~~~~~~~~~~~~ 75 (226)
T 3mc1_A 3 LYNYVLFDLDGTLTDSAEGITKSVKYSLNKFDIQVEDLSSLNKFVGPPLKTSFMEYY---NFD---E-ETATVAIDYYRD 75 (226)
T ss_dssp CCCEEEECSBTTTBCCHHHHHHHHHHHHHTTTCCCSCGGGGGGGSSSCHHHHHHHHH---CCC---H-HHHHHHHHHHHH
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHHHcCCCCCCHHHHHHHhCcCHHHHHHHHh---CCC---H-HHHHHHHHHHHH
Confidence 58999999999999999999999999999999884 456777778877666554443 322 1 222333333333
Q ss_pred HhcCC--CCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHH
Q 001380 157 KYAKP--NSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKI 234 (1089)
Q Consensus 157 ~~~~~--~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~ 234 (1089)
.+... ....++||+.++|+.|+++|++++|+||.....++..++.+|+. .+|+.++++++...+||++.+|+.++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~-~~f~~~~~~~~~~~~kp~~~~~~~~~~~ 154 (226)
T 3mc1_A 76 YFKAKGMFENKVYDGIEALLSSLKDYGFHLVVATSKPTVFSKQILEHFKLA-FYFDAIVGSSLDGKLSTKEDVIRYAMES 154 (226)
T ss_dssp HHTTTGGGSCCBCTTHHHHHHHHHHHTCEEEEEEEEEHHHHHHHHHHTTCG-GGCSEEEEECTTSSSCSHHHHHHHHHHH
T ss_pred HHHHhCcccCccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhCCH-hheeeeeccCCCCCCCCCHHHHHHHHHH
Confidence 33321 12478999999999999999999999999999999999999996 9999999999999999999999999999
Q ss_pred cCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC-CHHHHhhcCCcEEecCcccCCHHHHHhccC
Q 001380 235 LNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL-SEERLKEASPSLIRKEIGSVSLNDILTGGG 299 (1089)
Q Consensus 235 lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~-~~~~l~~~~~d~vi~dl~el~i~~ll~~~~ 299 (1089)
+|++|++|++|||+.+|+.+|+++|+.+++|.+|. ..+.+.+..|++++.++.+| .+++....
T Consensus 155 lgi~~~~~i~iGD~~~Di~~a~~aG~~~i~v~~g~~~~~~~~~~~ad~v~~s~~el--~~~~~~~~ 218 (226)
T 3mc1_A 155 LNIKSDDAIMIGDREYDVIGALKNNLPSIGVTYGFGSYEELKNAGANYIVNSVDEL--HKKILELR 218 (226)
T ss_dssp HTCCGGGEEEEESSHHHHHHHHTTTCCEEEESSSSSCHHHHHHHTCSEEESSHHHH--HHHHHTC-
T ss_pred hCcCcccEEEECCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCEEECCHHHH--HHHHHHHh
Confidence 99999999999999999999999999999999987 66676677999999999998 77776653
|
| >3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-24 Score=231.68 Aligned_cols=217 Identities=23% Similarity=0.297 Sum_probs=181.8
Q ss_pred CCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 001380 77 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLD 156 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1089)
+++|+|+||+||||+++...+..++.++++++|+......+....+.........+....+... .. .....+.+.+.+
T Consensus 4 ~~~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~ 81 (233)
T 3s6j_A 4 RPQTSFIFDLDGTLTDSVYQNVAAWKEALDAENIPLAMWRIHRKIGMSGGLMLKSLSRETGMSI-TD-EQAERLSEKHAQ 81 (233)
T ss_dssp -CCCEEEECCBTTTEECHHHHHHHHHHHHHHTTCCCCHHHHHHHTTSCHHHHHHHHHHC----C-CH-HHHHHHHHHHHH
T ss_pred CcCcEEEEcCCCccccChHHHHHHHHHHHHHcCCCCCHHHHHHHcCCcHHHHHHHHHHhcCCCC-CH-HHHHHHHHHHHH
Confidence 4589999999999999999999999999999999999888888888888887777776655432 22 222333333332
Q ss_pred HhcC-CCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHc
Q 001380 157 KYAK-PNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKIL 235 (1089)
Q Consensus 157 ~~~~-~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~l 235 (1089)
.+.. .....++||+.++|+.|++.|++++|+||.....++..++.+|+. .+|+.++++++....||++.+|+.+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~-~~f~~~~~~~~~~~~kp~~~~~~~~~~~l 160 (233)
T 3s6j_A 82 AYERLQHQIIALPGAVELLETLDKENLKWCIATSGGIDTATINLKALKLD-INKINIVTRDDVSYGKPDPDLFLAAAKKI 160 (233)
T ss_dssp HHHHTGGGCEECTTHHHHHHHHHHTTCCEEEECSSCHHHHHHHHHTTTCC-TTSSCEECGGGSSCCTTSTHHHHHHHHHT
T ss_pred HHHHhhccCccCCCHHHHHHHHHHCCCeEEEEeCCchhhHHHHHHhcchh-hhhheeeccccCCCCCCChHHHHHHHHHh
Confidence 2211 112378999999999999999999999999999999999999997 99999999999999999999999999999
Q ss_pred CCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC-CHHHHhhcCCcEEecCcccCCHHHHHhcc
Q 001380 236 NVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL-SEERLKEASPSLIRKEIGSVSLNDILTGG 298 (1089)
Q Consensus 236 gv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~-~~~~l~~~~~d~vi~dl~el~i~~ll~~~ 298 (1089)
|+++++|++|||+.+|+.+|+++|+.+++|.+|. ..+++.+.+|++++.++.+| .++|...
T Consensus 161 ~~~~~~~i~iGD~~~Di~~a~~aG~~~i~v~~g~~~~~~l~~~~ad~v~~~~~el--~~~l~~~ 222 (233)
T 3s6j_A 161 GAPIDECLVIGDAIWDMLAARRCKATGVGLLSGGYDIGELERAGALRVYEDPLDL--LNHLDEI 222 (233)
T ss_dssp TCCGGGEEEEESSHHHHHHHHHTTCEEEEEGGGSCCHHHHHHTTCSEEESSHHHH--HHTGGGT
T ss_pred CCCHHHEEEEeCCHHhHHHHHHCCCEEEEEeCCCCchHhHHhcCCCEEECCHHHH--HHHHHHH
Confidence 9999999999999999999999999999999985 78888888899999999998 6666554
|
| >3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.8e-24 Score=232.57 Aligned_cols=215 Identities=27% Similarity=0.365 Sum_probs=177.5
Q ss_pred CCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHH
Q 001380 77 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASV-KGVKGFDSEAAKKRFFEIYL 155 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (1089)
+++|+|+||+||||+++...+..++.++++++|+....+.+....+.........+... .+... . .+....+.+.+.
T Consensus 21 ~~~k~i~fDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~ 98 (247)
T 3dv9_A 21 IDLKAVLFDMDGVLFDSMPNHAESWHKIMKRFGFGLSREEAYMHEGRTGASTINIVSRRERGHDA-T-EEEIKAIYQAKT 98 (247)
T ss_dssp CCCCEEEEESBTTTBCCHHHHHHHHHHHHHHTTCCCCHHHHHHTTTSCHHHHHHHHHHHHHSSCC-C-HHHHHHHHHHHH
T ss_pred CCCCEEEECCCCccCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCChHHHHHHHHHHhcCCCC-C-HHHHHHHHHHHH
Confidence 46899999999999999999999999999999999888887777777766655544432 44321 2 333344444444
Q ss_pred HHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCc--cEEEEcCCccCCCCCHHHHHHHHH
Q 001380 156 DKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMF--DAIVSADAFENLKPAPDIFLSASK 233 (1089)
Q Consensus 156 ~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~f--d~i~~~~~~~~~KP~~~~~~~~l~ 233 (1089)
..+.......++||+.++|+.|+++|++++|+||.....+...++. ++. .+| +.+++++++..+||++++|+.+++
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~-~l~-~~f~~~~~~~~~~~~~~kp~~~~~~~~~~ 176 (247)
T 3dv9_A 99 EEFNKCPKAERMPGALEVLTKIKSEGLTPMVVTGSGQTSLLDRLNH-NFP-GIFQANLMVTAFDVKYGKPNPEPYLMALK 176 (247)
T ss_dssp HHHTTSCCCCBCTTHHHHHHHHHHTTCEEEEECSCC---CHHHHHH-HST-TTCCGGGEECGGGCSSCTTSSHHHHHHHH
T ss_pred HHHHhcccCCCCCCHHHHHHHHHHcCCcEEEEcCCchHHHHHHHHh-hHH-HhcCCCeEEecccCCCCCCCCHHHHHHHH
Confidence 4444434458899999999999999999999999998888899999 996 999 999999999999999999999999
Q ss_pred HcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC-CHHHHhhcCCcEEecCcccCCHHHHHhc
Q 001380 234 ILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL-SEERLKEASPSLIRKEIGSVSLNDILTG 297 (1089)
Q Consensus 234 ~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~-~~~~l~~~~~d~vi~dl~el~i~~ll~~ 297 (1089)
++|++|++|++|||+.+|+.+|+++|+.+++|.+|. ..+.+.+..|+++++++.++ .++|..
T Consensus 177 ~lg~~~~~~i~vGD~~~Di~~a~~aG~~~i~v~~~~~~~~~l~~~~ad~v~~~~~el--~~~l~~ 239 (247)
T 3dv9_A 177 KGGFKPNEALVIENAPLGVQAGVAAGIFTIAVNTGPLHDNVLLNEGANLLFHSMPDF--NKNWET 239 (247)
T ss_dssp HHTCCGGGEEEEECSHHHHHHHHHTTSEEEEECCSSSCHHHHHTTTCSEEESSHHHH--HHHHHH
T ss_pred HcCCChhheEEEeCCHHHHHHHHHCCCeEEEEcCCCCCHHHHHhcCCCEEECCHHHH--HHHHHH
Confidence 999999999999999999999999999999999987 66777778999999999998 555543
|
| >3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.8e-24 Score=231.81 Aligned_cols=206 Identities=18% Similarity=0.249 Sum_probs=174.1
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDK 157 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (1089)
|+|+|+||+||||+++...+..++.++++++|.....+.+....+.......... .++...........+.+.+.+.
T Consensus 28 mik~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 104 (240)
T 3sd7_A 28 NYEIVLFDLDGTLTDPKEGITKSIQYSLNSFGIKEDLENLDQFIGPPLHDTFKEY---YKFEDKKAKEAVEKYREYFADK 104 (240)
T ss_dssp CCSEEEECSBTTTEECHHHHHHHHHHHHHHTTCCCCGGGGGGGSSSCHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHT
T ss_pred hccEEEEecCCcCccCHHHHHHHHHHHHHHcCCCCCHHHHHHHhCccHHHHHHHH---hCCCHHHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999999777788888887766554433 2332212233333444444433
Q ss_pred hcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCC
Q 001380 158 YAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNV 237 (1089)
Q Consensus 158 ~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv 237 (1089)
... ...++||+.++|+.|+++|++++|+||+....++..++.+|+. .+|+.++++++....||++.+|..+++++|+
T Consensus 105 ~~~--~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~-~~f~~~~~~~~~~~~kp~~~~~~~~~~~~g~ 181 (240)
T 3sd7_A 105 GIF--ENKIYENMKEILEMLYKNGKILLVATSKPTVFAETILRYFDID-RYFKYIAGSNLDGTRVNKNEVIQYVLDLCNV 181 (240)
T ss_dssp GGG--CCEECTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCG-GGCSEEEEECTTSCCCCHHHHHHHHHHHHTC
T ss_pred ccc--ccccCccHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHcCcH-hhEEEEEeccccCCCCCCHHHHHHHHHHcCC
Confidence 222 2378999999999999999999999999999999999999996 9999999999999999999999999999999
Q ss_pred C-CCcEEEEcCChhhHHHHHHcCCeEEEEcCCC-CHHHHhhcCCcEEecCcccC
Q 001380 238 P-TSECIVIEDALAGVQAAKAAQMRCIAVTTTL-SEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 238 ~-p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~-~~~~l~~~~~d~vi~dl~el 289 (1089)
+ +++|++|||+.+|+++|+++|+.+++|.+|. ..+.+.+..|++++.++.|+
T Consensus 182 ~~~~~~i~vGD~~~Di~~a~~aG~~~i~v~~g~~~~~~~~~~~ad~v~~~~~el 235 (240)
T 3sd7_A 182 KDKDKVIMVGDRKYDIIGAKKIGIDSIGVLYGYGSFEEISESEPTYIVENVESI 235 (240)
T ss_dssp CCGGGEEEEESSHHHHHHHHHHTCEEEEESSSSCCHHHHHHHCCSEEESSSTTH
T ss_pred CCCCcEEEECCCHHHHHHHHHCCCCEEEEeCCCCCHHHHhhcCCCEEECCHHHH
Confidence 9 9999999999999999999999999999987 66677678999999999998
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-22 Score=224.75 Aligned_cols=253 Identities=18% Similarity=0.338 Sum_probs=201.7
Q ss_pred CCCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEe-eCCCEEEEEE
Q 001380 597 TSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYN-AKKNLLYVAD 675 (1089)
Q Consensus 597 ~~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d-~~g~~lyVaD 675 (1089)
...+..|.++++++ +|+|||++..+++|.+++.+|+.+..++..+. ....+..|.+++++ ++|+ +||++
T Consensus 26 ~g~~~~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~--------~~~~~~~p~~i~~~~~~g~-l~v~~ 95 (286)
T 1q7f_A 26 EGQFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKEGRFKFQFGECGK--------RDSQLLYPNRVAVVRNSGD-IIVTE 95 (286)
T ss_dssp TTCBSCEEEEEECT-TCCEEEEEGGGTEEEEECTTSCEEEEECCBSS--------STTCBSSEEEEEEETTTTE-EEEEE
T ss_pred CCccCCCceEEECC-CCCEEEEECCCCEEEEECCCCcEEEEecccCC--------CcccccCceEEEEEcCCCe-EEEEc
Confidence 46788999999997 78999999999999999999998887764321 13356789999995 5555 99999
Q ss_pred CC-CCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEe
Q 001380 676 TE-NHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFS 754 (1089)
Q Consensus 676 ~~-n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~ 754 (1089)
.. ++.|++++.++..+.++.. + .+..|++|+++++| .+||++.++++|+++++.+..+..+.
T Consensus 96 ~~~~~~i~~~d~~g~~~~~~~~-~---------------~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~~~~~~~ 158 (286)
T 1q7f_A 96 RSPTHQIQIYNQYGQFVRKFGA-T---------------ILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQNGNVLHKFG 158 (286)
T ss_dssp CGGGCEEEEECTTSCEEEEECT-T---------------TCSCEEEEEECTTS-CEEEEETTTTEEEEECTTSCEEEEEE
T ss_pred CCCCCEEEEECCCCcEEEEecC-c---------------cCCCceEEEEeCCC-CEEEEECCCCEEEEEcCCCCEEEEeC
Confidence 75 8899999977666666632 1 14579999999988 79999999999999998766666664
Q ss_pred CCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccc
Q 001380 755 GDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEV 834 (1089)
Q Consensus 755 g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~ 834 (1089)
.. ..+..|.+|+++++| ++||++..+++|+++++++..+..+... .
T Consensus 159 ~~-------------~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~~~~~~~~~--------------------g 204 (286)
T 1q7f_A 159 CS-------------KHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEGQYLRQIGGE--------------------G 204 (286)
T ss_dssp CT-------------TTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTCCEEEEESCT--------------------T
T ss_pred CC-------------CccCCcEEEEECCCC-CEEEEECCCCEEEEEcCCCCEEEEEccC--------------------C
Confidence 21 234579999999998 8999999999999999875444433210 1
Q ss_pred cccCceEEEEccCCcEEEEeCCCC-EEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCC
Q 001380 835 LLQHPLGVYCAKNGQIYVADSYNH-KIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNN 913 (1089)
Q Consensus 835 ~l~~P~gva~~~~G~lyVaD~~n~-~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~ 913 (1089)
.+..|.+|++|++|++||++..++ +|.++|+++..+.++.... ....|.+++++++|+|||++. ++
T Consensus 205 ~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~------------~~~~~~~i~~~~~g~l~vs~~-~~ 271 (286)
T 1q7f_A 205 ITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKV------------KHAQCFDVALMDDGSVVLASK-DY 271 (286)
T ss_dssp TSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESS------------CCSCEEEEEEETTTEEEEEET-TT
T ss_pred ccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccC------------CCCcceeEEECCCCcEEEECC-CC
Confidence 256899999999999999999886 9999999888887776421 234689999999999999985 79
Q ss_pred EEEEEeCCCC
Q 001380 914 IIRYLDLNKE 923 (1089)
Q Consensus 914 ~I~~~~~~~~ 923 (1089)
+|++++....
T Consensus 272 ~v~v~~~~~~ 281 (286)
T 1q7f_A 272 RLYIYRYVQL 281 (286)
T ss_dssp EEEEEECSCC
T ss_pred eEEEEEcccc
Confidence 9999987653
|
| >3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain- containing protein 1A; HDHD1A, haloacid dehalogenase-like hydrolase domain containing 1A; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-24 Score=232.49 Aligned_cols=209 Identities=24% Similarity=0.318 Sum_probs=181.7
Q ss_pred CCCCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 001380 75 KWGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIY 154 (1089)
Q Consensus 75 ~~~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (1089)
+++++|+|+||+||||+++...+..++.++++++|+....+.+..+.+.........+....+... ........+.+.+
T Consensus 26 ~~~~ik~i~fDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 104 (250)
T 3l5k_A 26 PPQPVTHLIFDMDGLLLDTERLYSVVFQEICNRYDKKYSWDVKSLVMGKKALEAAQIIIDVLQLPM-SKEELVEESQTKL 104 (250)
T ss_dssp CCCCCSEEEEETBTTTBCHHHHHHHHHHHHHHHTTCCCCHHHHHHHTTCCHHHHHHHHHHHHTCSS-CHHHHHHHHHHHH
T ss_pred cccCCcEEEEcCCCCcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHhcCCCHHHHHHHHHHHhCCCC-CHHHHHHHHHHHH
Confidence 345789999999999999999999999999999999998888888899988888888877777643 5666666666666
Q ss_pred HHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHH-CCCCCCCccEEEEcC--CccCCCCCHHHHHHH
Q 001380 155 LDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAA-AGLPVSMFDAIVSAD--AFENLKPAPDIFLSA 231 (1089)
Q Consensus 155 ~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~-~gl~~~~fd~i~~~~--~~~~~KP~~~~~~~~ 231 (1089)
.+.+.. ..++||+.++|+.|+++|++++|+||.....+...+.+ +++. .+|+.+++++ ++...||++++|+.+
T Consensus 105 ~~~~~~---~~~~~~~~~~l~~l~~~g~~~~i~sn~~~~~~~~~l~~~~~l~-~~f~~~~~~~~~~~~~~Kp~~~~~~~~ 180 (250)
T 3l5k_A 105 KEVFPT---AALMPGAEKLIIHLRKHGIPFALATSSRSASFDMKTSRHKEFF-SLFSHIVLGDDPEVQHGKPDPDIFLAC 180 (250)
T ss_dssp HHHGGG---CCBCTTHHHHHHHHHHTTCCEEEECSCCHHHHHHHTTTCHHHH-TTSSCEECTTCTTCCSCTTSTHHHHHH
T ss_pred HHHhcc---CCCCCCHHHHHHHHHhCCCcEEEEeCCCHHHHHHHHHhccCHH-hheeeEEecchhhccCCCCChHHHHHH
Confidence 655533 37899999999999999999999999988888777755 4785 8999999999 899999999999999
Q ss_pred HHHcCCCC--CcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccC
Q 001380 232 SKILNVPT--SECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 232 l~~lgv~p--~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el 289 (1089)
++++|+++ ++|++|||+.+|+++|+++|+.+++|.++...++ ....|++++.++.|+
T Consensus 181 ~~~lgi~~~~~~~i~iGD~~~Di~~a~~aG~~~i~v~~~~~~~~-~~~~ad~v~~sl~el 239 (250)
T 3l5k_A 181 AKRFSPPPAMEKCLVFEDAPNGVEAALAAGMQVVMVPDGNLSRD-LTTKATLVLNSLQDF 239 (250)
T ss_dssp HHTSSSCCCGGGEEEEESSHHHHHHHHHTTCEEEECCCTTSCGG-GSTTSSEECSCGGGC
T ss_pred HHHcCCCCCcceEEEEeCCHHHHHHHHHcCCEEEEEcCCCCchh-hcccccEeecCHHHh
Confidence 99999998 9999999999999999999999999999874444 456899999999999
|
| >2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-24 Score=229.61 Aligned_cols=209 Identities=23% Similarity=0.309 Sum_probs=173.5
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcCCC-CCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVE-VTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLD 156 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1089)
++|+|+||+||||+|+...+..++.++++++|+. .+.+.+....+.+.......+.... ...+....+.+.+.+
T Consensus 2 ~~k~viFDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 76 (222)
T 2nyv_A 2 SLRVILFDLDGTLIDSAKDIALALEKTLKELGLEEYYPDNVTKYIGGGVRALLEKVLKDK-----FREEYVEVFRKHYLE 76 (222)
T ss_dssp EECEEEECTBTTTEECHHHHHHHHHHHHHHTTCGGGCCSCGGGGCSSCHHHHHHHHHGGG-----CCTHHHHHHHHHHHH
T ss_pred CCCEEEECCCCcCCCCHHHHHHHHHHHHHHcCCCCCCHHHHHHHhCcCHHHHHHHHhChH-----HHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999987 5556677777877776666554311 223444555555544
Q ss_pred HhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcC
Q 001380 157 KYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILN 236 (1089)
Q Consensus 157 ~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lg 236 (1089)
.... ...++||+.++|+.|+++|++++|+||.....++..++.+|+. .+|+.+++++++...||++++|..+++++|
T Consensus 77 ~~~~--~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~-~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~ 153 (222)
T 2nyv_A 77 NPVV--YTKPYPEIPYTLEALKSKGFKLAVVSNKLEELSKKILDILNLS-GYFDLIVGGDTFGEKKPSPTPVLKTLEILG 153 (222)
T ss_dssp CSCS--SCEECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCG-GGCSEEECTTSSCTTCCTTHHHHHHHHHHT
T ss_pred hccc--cCccCCCHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCH-HHheEEEecCcCCCCCCChHHHHHHHHHhC
Confidence 3222 3478999999999999999999999999999999999999996 999999999999999999999999999999
Q ss_pred CCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhcc
Q 001380 237 VPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTGG 298 (1089)
Q Consensus 237 v~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~~ 298 (1089)
+++++|+||||+.+|+.+|+++|+.+++|.+|....+. ..|++++.++.++ .+++...
T Consensus 154 ~~~~~~~~vGD~~~Di~~a~~aG~~~i~v~~g~~~~~~--~~~~~~~~~~~el--~~~l~~~ 211 (222)
T 2nyv_A 154 EEPEKALIVGDTDADIEAGKRAGTKTALALWGYVKLNS--QIPDFTLSRPSDL--VKLMDNH 211 (222)
T ss_dssp CCGGGEEEEESSHHHHHHHHHHTCEEEEETTSSCSCCC--CCCSEEESSTTHH--HHHHHTT
T ss_pred CCchhEEEECCCHHHHHHHHHCCCeEEEEcCCCCCccc--cCCCEEECCHHHH--HHHHHHh
Confidence 99999999999999999999999999999987632222 6799999999988 5666443
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-22 Score=237.71 Aligned_cols=260 Identities=18% Similarity=0.223 Sum_probs=205.4
Q ss_pred EEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCC
Q 001380 625 IVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDY 704 (1089)
Q Consensus 625 I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~ 704 (1089)
.+.+...+.+.+..|..+..+..||.+.++.|+.|.+|+++++|+ |||+|..+++|+++|++++.+.++.+.+
T Consensus 99 ~F~y~~~~~v~tv~G~~~~~~~~dG~~~~a~~~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~~~~~------ 171 (409)
T 3hrp_A 99 TFKYEQAQNVSTISGSASKDGNDDGDLASAKFKYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTVHPGF------ 171 (409)
T ss_dssp CEEECCCEEEEEEEECTTCCSCCCBSTTTCCCCCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEEEETC------
T ss_pred eEEEecccEEEEeecccCCCccCCCcHHHcccCCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEeeccC------
Confidence 445555666666777777788889999999999999999999988 9999999999999999999999987542
Q ss_pred CCCCcccccccCCceeEEEecCCCEEEEEECCCc-EEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCC
Q 001380 705 QGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQH-QIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPD 783 (1089)
Q Consensus 705 ~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~-~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~ 783 (1089)
..|+ ++++++++.||+++...+ +|+.++..++......+.- ....+..|++++++++
T Consensus 172 -----------~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~----------~~~~~~~p~~iav~p~ 229 (409)
T 3hrp_A 172 -----------KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQL----------GSTFSGKIGAVALDET 229 (409)
T ss_dssp -----------CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEEC----------CTTSCSCCCBCEECTT
T ss_pred -----------CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeec----------cchhcCCcEEEEEeCC
Confidence 2577 999999999999998654 9999998766532221110 0113568999999996
Q ss_pred CCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCce-EEEEcc-CCcEEEEeCCCCEEE
Q 001380 784 FMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPL-GVYCAK-NGQIYVADSYNHKIK 861 (1089)
Q Consensus 784 g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~-gva~~~-~G~lyVaD~~n~~I~ 861 (1089)
+++||+++. +++|++++++++....+.+.. ..+.. -..|. ++++++ +|+|||+|..+++|+
T Consensus 230 ~g~lyv~d~-~~~I~~~d~~~~~~~~~~~~~--------~~g~~--------~~~P~~~ia~~p~~g~lyv~d~~~~~I~ 292 (409)
T 3hrp_A 230 EEWLYFVDS-NKNFGRFNVKTQEVTLIKQLE--------LSGSL--------GTNPGPYLIYYFVDSNFYMSDQNLSSVY 292 (409)
T ss_dssp SSEEEEECT-TCEEEEEETTTCCEEEEEECC--------CCSCC--------CCSSCCEEEEETTTTEEEEEETTTTEEE
T ss_pred CCeEEEEEC-CCcEEEEECCCCCEEEEeccc--------ccCCC--------CCCccccEEEeCCCCEEEEEeCCCCEEE
Confidence 559999886 789999999877766554321 01100 12377 999999 589999999999999
Q ss_pred EEeCCCCeEEEEeccC-CCCCCCCcccccccCCCceEEEccCCcEEEEEC-CCCEEEEEeCCCCCceEEEEeec
Q 001380 862 KLDPASNRVSTLAGIG-KAGFKDGAALAAQLSEPAGIIEAQNGNLFIADT-NNNIIRYLDLNKEEPELQTLELK 933 (1089)
Q Consensus 862 ~~d~~~~~v~t~~g~g-~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~-~n~~I~~~~~~~~~~~~~~l~~~ 933 (1089)
++++++. +.+++|.+ ..|+.+|.+..++|+.|.||+++++|+|||+|+ .+|+|+++++... .+.++.+.
T Consensus 293 ~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G--~v~~~~g~ 363 (409)
T 3hrp_A 293 KITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG--YVSTVAGQ 363 (409)
T ss_dssp EECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT--EEEEEEEC
T ss_pred EEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC--EEEEEeCC
Confidence 9998755 77777765 667788877888999999999999999999999 9999999996555 57777754
|
| >2hsz_A Novel predicted phosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP: c.108.1.6 | Back alignment and structure |
|---|
Probab=99.91 E-value=8.1e-24 Score=229.05 Aligned_cols=211 Identities=16% Similarity=0.274 Sum_probs=171.7
Q ss_pred CCCCceEEEEecCCcccCCchHHHHHHHHHHHHcCCC-CCHHhHhhhcCCCHHHHHHHHHhhc----CCCCCCH---HHH
Q 001380 75 KWGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVE-VTVEDFLPFMGTGEANFLGGVASVK----GVKGFDS---EAA 146 (1089)
Q Consensus 75 ~~~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~---~~~ 146 (1089)
...++|+|+||+||||+|+...+..++.++++++|+. .+.+.+..+.+.+...+........ +.. ... ...
T Consensus 19 ~~~~~k~iiFDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 97 (243)
T 2hsz_A 19 GMTQFKLIGFDLDGTLVNSLPDLALSINSALKDVNLPQASENLVMTWIGNGADVLSQRAVDWACKQAEKE-LTEDEFKYF 97 (243)
T ss_dssp CCSSCSEEEECSBTTTEECHHHHHHHHHHHHHHTTCCCCCHHHHHHHCSSCHHHHHHHHHHHHHHHHTCC-CCHHHHHHH
T ss_pred CCccCCEEEEcCCCcCCCCHHHHHHHHHHHHHHcCCCCCCHHHHHHHhCchHHHHHHHHhhhhhcccccc-CCHHHHHHH
Confidence 3456899999999999999999999999999999987 4556666777777665554443221 111 122 223
Q ss_pred HHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHH
Q 001380 147 KKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPD 226 (1089)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~ 226 (1089)
.+.+.+.|...+... ..++||+.++|+.|+++|++++|+||.....++..++++|+. .+|+.++++++....||+++
T Consensus 98 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~gl~-~~f~~~~~~~~~~~~Kp~~~ 174 (243)
T 2hsz_A 98 KRQFGFYYGENLCNI--SRLYPNVKETLEALKAQGYILAVVTNKPTKHVQPILTAFGID-HLFSEMLGGQSLPEIKPHPA 174 (243)
T ss_dssp HHHHHHHHHHHTTSS--CEECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCG-GGCSEEECTTTSSSCTTSSH
T ss_pred HHHHHHHHHHhcccc--CccCCCHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHcCch-heEEEEEecccCCCCCcCHH
Confidence 334444454443333 378999999999999999999999999999999999999996 99999999999999999999
Q ss_pred HHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCC-HHHHhhcCCcEEecCcccC
Q 001380 227 IFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLS-EERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 227 ~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~-~~~l~~~~~d~vi~dl~el 289 (1089)
+|..+++++|+++++|+||||+.+|+.+|+++|+.+++|.+|.. ...+....|++++.++.++
T Consensus 175 ~~~~~~~~~~~~~~~~~~vGD~~~Di~~a~~aG~~~i~v~~g~~~~~~~~~~~ad~vi~~~~el 238 (243)
T 2hsz_A 175 PFYYLCGKFGLYPKQILFVGDSQNDIFAAHSAGCAVVGLTYGYNYNIPIAQSKPDWIFDDFADI 238 (243)
T ss_dssp HHHHHHHHHTCCGGGEEEEESSHHHHHHHHHHTCEEEEESSSCSTTCCGGGGCCSEEESSGGGG
T ss_pred HHHHHHHHhCcChhhEEEEcCCHHHHHHHHHCCCeEEEEcCCCCchhhhhhCCCCEEECCHHHH
Confidence 99999999999999999999999999999999999999999763 4455567899999999887
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-22 Score=248.53 Aligned_cols=283 Identities=23% Similarity=0.288 Sum_probs=209.9
Q ss_pred CCCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC
Q 001380 597 TSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT 676 (1089)
Q Consensus 597 ~~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~ 676 (1089)
.+++..|.|||+|+.+++|||+|..+++|.+++.+|+..+++... .+..|.+|++||.++.|||+|.
T Consensus 80 ~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~-------------~l~~P~~Iavdp~~g~ly~tD~ 146 (619)
T 3s94_A 80 VSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQ-------------ELDQPRAIALDPSSGFMYWTDW 146 (619)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-------------SCSCCCCEEEETTTTEEEEEEC
T ss_pred eCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeC-------------CCCCCceEEEecCCCeEEEecc
Confidence 456789999999998999999999999999999999876655432 2678999999998777999998
Q ss_pred C-CCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeC
Q 001380 677 E-NHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSG 755 (1089)
Q Consensus 677 ~-n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g 755 (1089)
+ +++|.++++++...+++... .+.+|.||++|+.++.|||+|.++++|++++.++.....+..
T Consensus 147 g~~~~I~r~~~dG~~~~~l~~~----------------~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~ 210 (619)
T 3s94_A 147 GEVPKIERAGMDGSSRFIIINS----------------EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK 210 (619)
T ss_dssp SSSCEEEEEETTSCSCEEEECS----------------SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC----
T ss_pred CCCCEEEEEECCCCceEEEEeC----------------CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEe
Confidence 7 67999999988777777532 256899999999888999999999999999998766555431
Q ss_pred CCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCe-EEEecCC--C---------CCC--CCc
Q 001380 756 DGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGS-RLLAGGD--P---------IFP--DNL 821 (1089)
Q Consensus 756 ~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~-~~~~g~~--~---------~~~--~~l 821 (1089)
..+.+|.||+++.+ .|||+|..+++|.+++..++.. ..+..+. | ..+ .+.
T Consensus 211 --------------~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~ 274 (619)
T 3s94_A 211 --------------GSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNP 274 (619)
T ss_dssp -------------------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCT
T ss_pred --------------CCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCcccc
Confidence 23568999999865 9999999999999999876643 2222210 0 000 000
Q ss_pred --------------------cc----cCC---CCC--------------------------cc-c-----cccccCceEE
Q 001380 822 --------------------FK----FGD---RDG--------------------------MG-S-----EVLLQHPLGV 842 (1089)
Q Consensus 822 --------------------~~----~g~---~dg--------------------------~~-~-----~~~l~~P~gv 842 (1089)
+. .|. .|+ .. . -..+.+|.+|
T Consensus 275 C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~l 354 (619)
T 3s94_A 275 CGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAI 354 (619)
T ss_dssp TTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEE
T ss_pred ccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccceEEEecCCCccceeEEeccccCccEEE
Confidence 00 000 010 00 0 0236678999
Q ss_pred EEcc-CCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEcc-CCcEEEEECCCCEEEEEeC
Q 001380 843 YCAK-NGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQ-NGNLFIADTNNNIIRYLDL 920 (1089)
Q Consensus 843 a~~~-~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~-~G~lyVad~~n~~I~~~~~ 920 (1089)
++|+ +|.|||+|..+++|+++++++....++... .+..|.|||+|+ .++||++|..+++|.++++
T Consensus 355 d~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~-------------~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~ 421 (619)
T 3s94_A 355 DYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTA-------------QIAHPDGIAVDWVARNLYWTDTGTDRIEVTRL 421 (619)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-------------SCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEEC-------------CCCCcCceEEecccCcEEEEeCCCCcEEEEeC
Confidence 9997 679999999999999999988766666532 467899999996 6789999999999999999
Q ss_pred CCCCceEEEEeecccCCCC
Q 001380 921 NKEEPELQTLELKGVQPPT 939 (1089)
Q Consensus 921 ~~~~~~~~~l~~~~~~~p~ 939 (1089)
++. ..+++...++..|.
T Consensus 422 ~G~--~~~~l~~~~l~~P~ 438 (619)
T 3s94_A 422 NGT--MRKILISEDLEEPR 438 (619)
T ss_dssp TSC--SCEEEECTTCCSEE
T ss_pred CCC--eEEEEEECCCCCee
Confidence 987 34555434444443
|
| >3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde hydrolase like P structural genomics, PSI-2, protein structure initiative; 2.30A {Oleispira antarctica} SCOP: c.108.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=9e-24 Score=232.79 Aligned_cols=218 Identities=23% Similarity=0.293 Sum_probs=176.9
Q ss_pred CCCceEEEEecCCcccCCchHH-HHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHH----------HhhcCCCC--CC
Q 001380 76 WGKVSAVLFDMDGVLCNSEEPS-RRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGV----------ASVKGVKG--FD 142 (1089)
Q Consensus 76 ~~~~k~ViFD~DGTL~d~~~~~-~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~--~~ 142 (1089)
++++|+|+||+||||+++.... ..++.++++++|+....+.+..+.+.......... ...++... ..
T Consensus 11 ~~~~k~i~fDlDGTL~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (277)
T 3iru_A 11 AGPVEALILDWAGTTIDFGSLAPVYAFMELFKQEGIEVTQAEAREPMGTEKSEHIRRMLGNSRIANAWLSIKGQASNEED 90 (277)
T ss_dssp CCCCCEEEEESBTTTBSTTCCHHHHHHHHHHHTTTCCCCHHHHHTTTTSCHHHHHHHHTTSHHHHHHHHHHHSSCCCHHH
T ss_pred hccCcEEEEcCCCCcccCCcccHHHHHHHHHHHhCCCCCHHHHHHHhcCchHHHHHHhccchHHHHHHHHHhccCCCHHH
Confidence 4568999999999999987755 78999999999999888888888887655544333 22233221 11
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCC-ccEEEEcCCccCC
Q 001380 143 SEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSM-FDAIVSADAFENL 221 (1089)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~-fd~i~~~~~~~~~ 221 (1089)
.......+.+.+.+.+... ..++||+.++|+.|+++|++++|+||.....++..++.+++. .+ |+.++++++...+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~l~~~g~~~~i~tn~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~ 167 (277)
T 3iru_A 91 IKRLYDLFAPIQTRIVAQR--SQLIPGWKEVFDKLIAQGIKVGGNTGYGPGMMAPALIAAKEQ-GYTPASTVFATDVVRG 167 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHT--CCBCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHT-TCCCSEEECGGGSSSC
T ss_pred HHHHHHHHHHHHHHHhhcc--CccCcCHHHHHHHHHHcCCeEEEEeCCchHHHHHHHHhcCcc-cCCCceEecHHhcCCC
Confidence 2223333434444433332 378999999999999999999999999999999999999986 77 8999999999999
Q ss_pred CCCHHHHHHHHHHcCCCC-CcEEEEcCChhhHHHHHHcCCeEEEEcCCCC------------------------HHHHhh
Q 001380 222 KPAPDIFLSASKILNVPT-SECIVIEDALAGVQAAKAAQMRCIAVTTTLS------------------------EERLKE 276 (1089)
Q Consensus 222 KP~~~~~~~~l~~lgv~p-~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~------------------------~~~l~~ 276 (1089)
||++.+|+.+++++|+++ ++|+||||+.+|+++|+++|+.+++|.+|.. .+++.+
T Consensus 168 kp~~~~~~~~~~~lgi~~~~~~i~vGD~~~Di~~a~~aG~~~v~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 247 (277)
T 3iru_A 168 RPFPDMALKVALELEVGHVNGCIKVDDTLPGIEEGLRAGMWTVGVSCSGNEVGLDREDWQALSSDEQQSYRQHAEQRLFN 247 (277)
T ss_dssp TTSSHHHHHHHHHHTCSCGGGEEEEESSHHHHHHHHHTTCEEEEECSSSTTTCCCHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCccEEEEcCCHHHHHHHHHCCCeEEEEecCCcccccchhhhhhcchhhhhhhhhhhHHHHhh
Confidence 999999999999999999 9999999999999999999999999999853 467777
Q ss_pred cCCcEEecCcccCCHHHHHhcc
Q 001380 277 ASPSLIRKEIGSVSLNDILTGG 298 (1089)
Q Consensus 277 ~~~d~vi~dl~el~i~~ll~~~ 298 (1089)
.+|+++++++.+| .++|...
T Consensus 248 ~~ad~v~~~~~el--~~~l~~~ 267 (277)
T 3iru_A 248 AGAHYVIDSVADL--ETVITDV 267 (277)
T ss_dssp HTCSEEESSGGGT--HHHHHHH
T ss_pred CCCCEEecCHHHH--HHHHHHH
Confidence 8899999999999 6666543
|
| >3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.9e-24 Score=225.31 Aligned_cols=207 Identities=26% Similarity=0.393 Sum_probs=175.4
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDK 157 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (1089)
|+|+|+||+||||+++...+..++.++++++|.....+.+....+.....+...+....+... ........+.+.+.+.
T Consensus 4 m~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 82 (214)
T 3e58_A 4 MVEAIIFDMDGVLFDTEKYYYDRRASFLGQKGISIDHLPPSFFIGGNTKQVWENILRDEYDKW-DVSTLQEEYNTYKQNN 82 (214)
T ss_dssp CCCEEEEESBTTTBCCHHHHHHHHHHHHHHTTCCCTTSCHHHHTTSCGGGCHHHHHGGGGGGS-CHHHHHHHHHHHHHHS
T ss_pred cccEEEEcCCCCccccHHHHHHHHHHHHHHcCCCCCHHHHHHHcCCCHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHHh
Confidence 579999999999999999999999999999999888778888888887777777766554332 4455555555544433
Q ss_pred hcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCC
Q 001380 158 YAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNV 237 (1089)
Q Consensus 158 ~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv 237 (1089)
.. .....++||+.++|+.|+++|++++|+||.....++..++.+|+. .+|+.++++++....||++++|+.+++++|+
T Consensus 83 ~~-~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~-~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~ 160 (214)
T 3e58_A 83 PL-PYKELIFPDVLKVLNEVKSQGLEIGLASSSVKADIFRALEENRLQ-GFFDIVLSGEEFKESKPNPEIYLTALKQLNV 160 (214)
T ss_dssp CC-CHHHHBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCG-GGCSEEEEGGGCSSCTTSSHHHHHHHHHHTC
T ss_pred hc-ccCCCcCchHHHHHHHHHHCCCCEEEEeCCcHHHHHHHHHHcCcH-hheeeEeecccccCCCCChHHHHHHHHHcCC
Confidence 21 112257999999999999999999999999999999999999996 9999999999999999999999999999999
Q ss_pred CCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccC
Q 001380 238 PTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 238 ~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el 289 (1089)
++++|++|||+.+|+.+|+++|+.++++.++..... ...|+++++++.++
T Consensus 161 ~~~~~~~iGD~~~Di~~a~~aG~~~~~~~~~~~~~~--~~~a~~~~~~~~el 210 (214)
T 3e58_A 161 QASRALIIEDSEKGIAAGVAADVEVWAIRDNEFGMD--QSAAKGLLDSLTDV 210 (214)
T ss_dssp CGGGEEEEECSHHHHHHHHHTTCEEEEECCSSSCCC--CTTSSEEESSGGGG
T ss_pred ChHHeEEEeccHhhHHHHHHCCCEEEEECCCCccch--hccHHHHHHHHHHH
Confidence 999999999999999999999999999998642211 26899999999988
|
| >3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics, protein structure initiative, NEW research center for structural genomics; 3.00A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.3e-24 Score=229.10 Aligned_cols=212 Identities=25% Similarity=0.350 Sum_probs=166.6
Q ss_pred ceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCC-CCC---HHHHHHHHHHHH
Q 001380 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVK-GFD---SEAAKKRFFEIY 154 (1089)
Q Consensus 79 ~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~ 154 (1089)
+|+|+||+||||+++...+..++.++++++|+..+.+.+..+.+.........+....+.. ... .......+.+.+
T Consensus 2 ik~i~fDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (233)
T 3nas_A 2 LKAVIFDLDGVITDTAEYHFLAWKHIAEQIDIPFDRDMNERLKGISREESLESILIFGGAETKYTNAEKQELMHRKNRDY 81 (233)
T ss_dssp CCEEEECSBTTTBCHHHHHHHHHHHHHHHTTCCCCHHHHHHTTTCCHHHHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHH
T ss_pred CcEEEECCCCCcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHcCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999888888899999888888777766541 112 223334444455
Q ss_pred HHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHH
Q 001380 155 LDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKI 234 (1089)
Q Consensus 155 ~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~ 234 (1089)
.+.+.......++||+.++|+.|+++|++++|+||... ++..++.+|+. .+|+.+++++++..+||++++|+.++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~t~~~~--~~~~l~~~gl~-~~f~~i~~~~~~~~~Kp~~~~~~~~~~~ 158 (233)
T 3nas_A 82 QMLISKLTPEDLLPGIGRLLCQLKNENIKIGLASSSRN--APKILRRLAII-DDFHAIVDPTTLAKGKPDPDIFLTAAAM 158 (233)
T ss_dssp HHHHHTCCGGGSCTTHHHHHHHHHHTTCEEEECCSCTT--HHHHHHHTTCT-TTCSEECCC---------CCHHHHHHHH
T ss_pred HHHHhhcCcCCcCcCHHHHHHHHHHCCCcEEEEcCchh--HHHHHHHcCcH-hhcCEEeeHhhCCCCCCChHHHHHHHHH
Confidence 55444433234899999999999999999999999854 88899999996 9999999999999999999999999999
Q ss_pred cCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhcc
Q 001380 235 LNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTGG 298 (1089)
Q Consensus 235 lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~~ 298 (1089)
+|++|++|+||||+.+|+++|+++|+.++++++. +++. .|++++.++.++.+..++...
T Consensus 159 lgi~~~~~i~vGDs~~Di~~a~~aG~~~~~~~~~---~~~~--~ad~v~~s~~el~~~~~~~~~ 217 (233)
T 3nas_A 159 LDVSPADCAAIEDAEAGISAIKSAGMFAVGVGQG---QPML--GADLVVRQTSDLTLELLHEEW 217 (233)
T ss_dssp HTSCGGGEEEEECSHHHHHHHHHTTCEEEECC------------CSEECSSGGGCCHHHHHHHH
T ss_pred cCCCHHHEEEEeCCHHHHHHHHHcCCEEEEECCc---cccc--cCCEEeCChHhCCHHHHHHHH
Confidence 9999999999999999999999999999999653 3333 799999999999887777654
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-22 Score=225.78 Aligned_cols=227 Identities=20% Similarity=0.254 Sum_probs=179.4
Q ss_pred CCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCC----CEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEE
Q 001380 598 SPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDG----NFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYV 673 (1089)
Q Consensus 598 ~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g----~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyV 673 (1089)
..+..|.++++|+.+++|||+|..+++|.+++.+| .....+.. ..+..|.||++|+.++.|||
T Consensus 27 ~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~-------------~~~~~p~glavd~~~~~ly~ 93 (316)
T 1ijq_A 27 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-------------RDIQAPDGLAVDWIHSNIYW 93 (316)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC-------------SSCSCCCEEEEETTTTEEEE
T ss_pred cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe-------------CCCCCcCEEEEeecCCeEEE
Confidence 35788999999988899999999999999999987 33222221 12568999999987767999
Q ss_pred EECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC-cEEEEEECCCCeEEE
Q 001380 674 ADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ-HQIWEHSTVDGVTRA 752 (1089)
Q Consensus 674 aD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~-~~I~~~~~~~g~~~~ 752 (1089)
+|..+++|.++++++...+++... .+..|.+|+++|.++.||+++.++ ++|+++++++...+.
T Consensus 94 ~d~~~~~I~~~~~~g~~~~~~~~~----------------~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~ 157 (316)
T 1ijq_A 94 TDSVLGTVSVADTKGVKRKTLFRE----------------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 157 (316)
T ss_dssp EETTTTEEEEEETTSSSEEEEEEC----------------TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred EECCCCEEEEEeCCCCceEEEEEC----------------CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE
Confidence 999999999999988777776531 145899999999888999999986 899999987766555
Q ss_pred EeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccc
Q 001380 753 FSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGS 832 (1089)
Q Consensus 753 ~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~ 832 (1089)
+.. ..+.+|+||++|+++++|||+|+.+++|.+++.+++..+++....
T Consensus 158 ~~~--------------~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~------------------ 205 (316)
T 1ijq_A 158 LVT--------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE------------------ 205 (316)
T ss_dssp EEC--------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECT------------------
T ss_pred EEE--------------CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecC------------------
Confidence 542 246689999999988899999999999999999876665554210
Q ss_pred cccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCC-eEEEEeccCCCCCCCCcccccccCCCceEEEcc
Q 001380 833 EVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASN-RVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQ 901 (1089)
Q Consensus 833 ~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~-~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~ 901 (1089)
..+.+|.||+++ +|++||+|+.+++|.++++.++ .+.++.. .+..|.||++..
T Consensus 206 -~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~~--------------~~~~p~~i~v~~ 259 (316)
T 1ijq_A 206 -KRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAE--------------NLLSPEDMVLFH 259 (316)
T ss_dssp -TTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEEC--------------SCSCCCCEEEES
T ss_pred -CccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEec--------------CCCCceEEEEec
Confidence 126799999997 5899999999999999998544 4555542 366799988764
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.6e-23 Score=241.83 Aligned_cols=238 Identities=18% Similarity=0.248 Sum_probs=187.8
Q ss_pred CCCCCCCCCCCCcc-ccCCcceeEEeeC--CCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCC
Q 001380 641 SGEEGLRDGSFDDA-TFNRPQGLAYNAK--KNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNS 717 (1089)
Q Consensus 641 ~g~~g~~dG~~~~~-~f~~P~gla~d~~--g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~ 717 (1089)
.|..++.||.+.++ +|+.|.||+++++ ++.|||+|.. ++|++++++++.++++++ .+..
T Consensus 122 ~g~~~~~dG~~~~a~~~~~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~~-----------------~~~~ 183 (433)
T 4hw6_A 122 NTKWDVLAGPFDDCGAFDNIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKTT-----------------NIGQ 183 (433)
T ss_dssp TTBCCCCCEETTSCCCCSCCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEECC-----------------CCSC
T ss_pred CCCccccCCchHHhcccCCCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEeec-----------------CCCC
Confidence 56888899998887 9999999999984 4459999988 999999999999999974 1458
Q ss_pred ceeEEEecCCCEEEEEECCCc----EEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCC
Q 001380 718 PWDVCYKPINEKVYIAMAGQH----QIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSE 793 (1089)
Q Consensus 718 P~~la~~~~g~~lyvad~~~~----~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~ 793 (1089)
|.+|+++++|+ |||++.+++ .+..++..++.... .....+..|.|+++++++++|||+|..
T Consensus 184 P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~--------------~~~~~~~~P~giavd~~~G~lyv~d~~ 248 (433)
T 4hw6_A 184 CADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTER--------------LSLCNARGAKTCAVHPQNGKIYYTRYH 248 (433)
T ss_dssp EEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCE--------------EEEEECSSBCCCEECTTTCCEEECBTT
T ss_pred ccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeecc--------------ccccccCCCCEEEEeCCCCeEEEEECC
Confidence 99999999996 999998652 34445433221100 001346789999999944599999999
Q ss_pred CCeEEEEEcCCCCe-EEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEEEeCCCCEEEEEeCC--CCe
Q 001380 794 SSSIRALNLKTGGS-RLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADSYNHKIKKLDPA--SNR 869 (1089)
Q Consensus 794 ~~~I~~~~~~~~~~-~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~~n~~I~~~d~~--~~~ 869 (1089)
+++|++++++++.+ ..+... +. ...+.+++++++|+ |||+|+.+|+|++++.+ ++.
T Consensus 249 ~~~V~~~d~~~g~~~~~~~~~-----------~~---------~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~ 308 (433)
T 4hw6_A 249 HAMISSYDPATGTLTEEEVMM-----------DT---------KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGK 308 (433)
T ss_dssp CSEEEEECTTTCCEEEEEEEC-----------SC---------CSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCC
T ss_pred CCEEEEEECCCCeEEEEEecc-----------CC---------CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcc
Confidence 99999999986665 333211 10 12467899999997 99999999999998865 343
Q ss_pred ---EEEEecc-CCCCCCCCcccccccCCCceEEE---------ccCCcEEEEECCCCEEEEEeCCCCCceEEEEeecc
Q 001380 870 ---VSTLAGI-GKAGFKDGAALAAQLSEPAGIIE---------AQNGNLFIADTNNNIIRYLDLNKEEPELQTLELKG 934 (1089)
Q Consensus 870 ---v~t~~g~-g~~g~~~g~~~~~~l~~P~gi~v---------d~~G~lyVad~~n~~I~~~~~~~~~~~~~~l~~~~ 934 (1089)
..+++|. +..|+.+|.+..++|+.|.||++ +.+|+|||+|+.||+|+++++++ .+.++.+.+
T Consensus 309 ~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~G---~v~t~~G~g 383 (433)
T 4hw6_A 309 LAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPEG---RVTTYAGRG 383 (433)
T ss_dssp BCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTTS---EEEEEECCC
T ss_pred cCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCCC---CEEEEEeCC
Confidence 3577776 77788888888999999999999 88999999999999999999866 477777554
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-22 Score=222.00 Aligned_cols=228 Identities=18% Similarity=0.225 Sum_probs=179.9
Q ss_pred CCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCC
Q 001380 599 PLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTEN 678 (1089)
Q Consensus 599 ~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n 678 (1089)
+..+|.++++|+.+++|||+|..+++|.+++.+|.....+... .+..|.+|+++++++.|||+|..+
T Consensus 34 ~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~-------------~~~~p~~ia~d~~~~~lyv~d~~~ 100 (267)
T 1npe_A 34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ-------------DLGSPEGIALDHLGRTIFWTDSQL 100 (267)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT-------------TCCCEEEEEEETTTTEEEEEETTT
T ss_pred CCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEEC-------------CCCCccEEEEEecCCeEEEEECCC
Confidence 3467899999988899999999999999999998755444322 146899999999877799999999
Q ss_pred CEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC--CcEEEEEECCCCeEEEEeCC
Q 001380 679 HALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG--QHQIWEHSTVDGVTRAFSGD 756 (1089)
Q Consensus 679 ~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~--~~~I~~~~~~~g~~~~~~g~ 756 (1089)
++|.++++++...+.+...+ +..|.+++++++++.|||++.+ +++|++++.++.....+..
T Consensus 101 ~~I~~~~~~g~~~~~~~~~~----------------~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~- 163 (267)
T 1npe_A 101 DRIEVAKMDGTQRRVLFDTG----------------LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ- 163 (267)
T ss_dssp TEEEEEETTSCSCEEEECSS----------------CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEEC-
T ss_pred CEEEEEEcCCCCEEEEEECC----------------CCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEE-
Confidence 99999999876655554221 4589999999987899999987 6899999987655444431
Q ss_pred CccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccc
Q 001380 757 GYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLL 836 (1089)
Q Consensus 757 g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l 836 (1089)
..+..|+||++++++++|||+|..+++|++++++++....+.. .+
T Consensus 164 -------------~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~----------------------~~ 208 (267)
T 1npe_A 164 -------------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE----------------------GL 208 (267)
T ss_dssp -------------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE----------------------CC
T ss_pred -------------CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec----------------------CC
Confidence 2356899999999888999999999999999998644433321 14
Q ss_pred cCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc
Q 001380 837 QHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN 904 (1089)
Q Consensus 837 ~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~ 904 (1089)
.+|.|++++ +|++||+|..+++|.++|++++.+......+ ....|.||++.+++.
T Consensus 209 ~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g------------~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 209 QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPH------------KQTRLYGITIALSQC 263 (267)
T ss_dssp CSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCS------------SCCCCCCEEEECSCC
T ss_pred CCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccc------------cccccceeeecCccC
Confidence 689999998 7899999999999999999877654433222 234599999988764
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-22 Score=228.92 Aligned_cols=237 Identities=17% Similarity=0.249 Sum_probs=190.7
Q ss_pred CCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeE
Q 001380 612 NNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTV 691 (1089)
Q Consensus 612 ~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v 691 (1089)
+..|++++. +.|.+++++|.....+... +.+|.||++++.++.|||+|..+++|++++++++.+
T Consensus 44 ~~~ll~~~~--~~I~~i~~~g~~~~~~~~~--------------~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~ 107 (349)
T 3v64_C 44 EPVLLFANR--IDIRQVLPHRSEYTLLLNN--------------LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV 107 (349)
T ss_dssp CCEEEEECB--SCEEEECTTSCCEEEEECS--------------CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CceeEeecc--cceEEEeCCCCeeEEeecC--------------CCceEEEEEeccccEEEEEeccCCceEEEecCCCCc
Confidence 567888875 6799999998765544332 457999999987778999999999999999998877
Q ss_pred EEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCcc
Q 001380 692 RTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTS 771 (1089)
Q Consensus 692 ~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~ 771 (1089)
+++...+ +..|.+|++++.++.||+++.++++|.++++++...+.+.. ..
T Consensus 108 ~~~~~~~----------------~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~--------------~~ 157 (349)
T 3v64_C 108 EEVVSTG----------------LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW--------------QS 157 (349)
T ss_dssp EEEECSS----------------CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------------TT
T ss_pred eEEEeCC----------------CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe--------------CC
Confidence 7765332 45899999999888999999999999999988765555431 34
Q ss_pred ccCCceEEEcCCCCEEEEEeCCC-CeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEcc-CCc
Q 001380 772 FAQPSGISLSPDFMEIYVADSES-SSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAK-NGQ 849 (1089)
Q Consensus 772 ~~~P~glav~~~g~~lyvad~~~-~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~-~G~ 849 (1089)
+..|.||+++|.++.||++|.++ ++|+++++++...+.+... .+..|.||++|+ +++
T Consensus 158 l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~---------------------~~~~PnGla~d~~~~~ 216 (349)
T 3v64_C 158 LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT---------------------HLFWPNGLTIDYAGRR 216 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCS---------------------SCSCEEEEEEETTTTE
T ss_pred CCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEEC---------------------CCCCcceEEEeCCCCE
Confidence 66899999999777999999998 9999999987655544221 267899999996 678
Q ss_pred EEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeC-CCCCceEE
Q 001380 850 IYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDL-NKEEPELQ 928 (1089)
Q Consensus 850 lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~-~~~~~~~~ 928 (1089)
|||+|+.+++|.++|.++....++... .+..|.||+++ +|+|||+|+.+++|.+++. .+. .+.
T Consensus 217 lY~aD~~~~~I~~~~~dG~~~~~~~~~-------------~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~--~~~ 280 (349)
T 3v64_C 217 MYWVDAKHHVIERANLDGSHRKAVISQ-------------GLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGK--NQE 280 (349)
T ss_dssp EEEEETTTTEEEEEETTSCSCEEEECS-------------SCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC--SCE
T ss_pred EEEEECCCCEEEEEeCCCCceEEEEeC-------------CCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCC--ccE
Confidence 999999999999999987766665432 36789999996 6789999999999999994 454 345
Q ss_pred EEe
Q 001380 929 TLE 931 (1089)
Q Consensus 929 ~l~ 931 (1089)
++.
T Consensus 281 ~i~ 283 (349)
T 3v64_C 281 IIR 283 (349)
T ss_dssp EEE
T ss_pred Eec
Confidence 554
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-22 Score=231.14 Aligned_cols=225 Identities=20% Similarity=0.291 Sum_probs=182.1
Q ss_pred CCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC
Q 001380 598 SPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE 677 (1089)
Q Consensus 598 ~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~ 677 (1089)
..+..|.++++|+.+++|||+|..+++|.+++++|.....+...+ +..|.||++|+.++.|||+|..
T Consensus 70 ~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~-------------~~~p~glavd~~~g~ly~~d~~ 136 (349)
T 3v64_C 70 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG-------------LESPGGLAVDWVHDKLYWTDSG 136 (349)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-------------CSCCCEEEEETTTTEEEEEETT
T ss_pred cCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCC-------------CCCccEEEEecCCCeEEEEcCC
Confidence 456789999999889999999999999999999987655543321 4589999999877779999999
Q ss_pred CCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC-cEEEEEECCCCeEEEEeCC
Q 001380 678 NHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ-HQIWEHSTVDGVTRAFSGD 756 (1089)
Q Consensus 678 n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~-~~I~~~~~~~g~~~~~~g~ 756 (1089)
+++|.++++++...+++... .+..|.+|+++|.++.||++|.++ ++|++++.++...+.+..
T Consensus 137 ~~~I~~~~~dG~~~~~l~~~----------------~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~- 199 (349)
T 3v64_C 137 TSRIEVANLDGAHRKVLLWQ----------------SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD- 199 (349)
T ss_dssp TTEEEEEETTSCSCEEEECT----------------TCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCC-
T ss_pred CCeEEEEcCCCCceEEEEeC----------------CCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEE-
Confidence 99999999988766666421 156899999999888999999998 999999987655444431
Q ss_pred CccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccc
Q 001380 757 GYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLL 836 (1089)
Q Consensus 757 g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l 836 (1089)
..+.+|+||++|+++++|||+|+.+++|++++++++..+.+... .+
T Consensus 200 -------------~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~---------------------~~ 245 (349)
T 3v64_C 200 -------------THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ---------------------GL 245 (349)
T ss_dssp -------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS---------------------SC
T ss_pred -------------CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeC---------------------CC
Confidence 34678999999988789999999999999999987655544321 16
Q ss_pred cCceEEEEccCCcEEEEeCCCCEEEEEeC-CCCeEEEEeccCCCCCCCCcccccccCCCceEEEcc
Q 001380 837 QHPLGVYCAKNGQIYVADSYNHKIKKLDP-ASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQ 901 (1089)
Q Consensus 837 ~~P~gva~~~~G~lyVaD~~n~~I~~~d~-~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~ 901 (1089)
.+|.||+++ +|.|||+|+.+++|.++++ .+..+.++.. .+..|.||++..
T Consensus 246 ~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~--------------~~~~p~gi~v~~ 296 (349)
T 3v64_C 246 PHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRN--------------KLHFPMDIHTLH 296 (349)
T ss_dssp SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEEC--------------SCSCCCCEEEEC
T ss_pred CCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEecc--------------CCCCCceEEEEc
Confidence 799999995 7899999999999999994 5555566642 467799988863
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-22 Score=235.27 Aligned_cols=226 Identities=19% Similarity=0.291 Sum_probs=185.1
Q ss_pred CCCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC
Q 001380 597 TSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT 676 (1089)
Q Consensus 597 ~~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~ 676 (1089)
...+..|.++++|+.+++|||+|..+++|.+++++|.....+...+ +..|.||++|+.++.|||+|.
T Consensus 112 ~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~-------------~~~p~glavd~~~g~lY~~d~ 178 (386)
T 3v65_B 112 LNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG-------------LESPGGLAVDWVHDKLYWTDS 178 (386)
T ss_dssp ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS-------------CSCCCCEEEETTTTEEEEEET
T ss_pred ecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC-------------CCCccEEEEEeCCCeEEEEcC
Confidence 3567889999999889999999999999999999987665554321 458999999987777999999
Q ss_pred CCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC-cEEEEEECCCCeEEEEeC
Q 001380 677 ENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ-HQIWEHSTVDGVTRAFSG 755 (1089)
Q Consensus 677 ~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~-~~I~~~~~~~g~~~~~~g 755 (1089)
.+++|.++++++...+++...+ +..|.+|+++|.++.||++|.+. ++|+++++++...+.+..
T Consensus 179 ~~~~I~~~~~dg~~~~~l~~~~----------------l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~ 242 (386)
T 3v65_B 179 GTSRIEVANLDGAHRKVLLWQS----------------LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD 242 (386)
T ss_dssp TTTEEEECBTTSCSCEEEECSS----------------CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred CCCeEEEEeCCCCceEEeecCC----------------CCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE
Confidence 9999999999887766665321 56899999999888999999998 999999988766665542
Q ss_pred CCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCcccccc
Q 001380 756 DGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVL 835 (1089)
Q Consensus 756 ~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~ 835 (1089)
..+.+|+||++++++++|||+|+.+++|++++++++..+.+... .
T Consensus 243 --------------~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~---------------------~ 287 (386)
T 3v65_B 243 --------------THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ---------------------G 287 (386)
T ss_dssp --------------SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECS---------------------S
T ss_pred --------------CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEEC---------------------C
Confidence 33668999999987779999999999999999987655544321 1
Q ss_pred ccCceEEEEccCCcEEEEeCCCCEEEEEeC-CCCeEEEEeccCCCCCCCCcccccccCCCceEEEcc
Q 001380 836 LQHPLGVYCAKNGQIYVADSYNHKIKKLDP-ASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQ 901 (1089)
Q Consensus 836 l~~P~gva~~~~G~lyVaD~~n~~I~~~d~-~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~ 901 (1089)
+.+|.||+++ ++.|||+|+.+++|.++++ .+..+.++.. .+..|.||++..
T Consensus 288 ~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~--------------~~~~p~gi~v~~ 339 (386)
T 3v65_B 288 LPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRN--------------KLHFPMDIHTLH 339 (386)
T ss_dssp CSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEEC--------------SCSCCCCEEEES
T ss_pred CCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEcc--------------CCCCCceEEEEc
Confidence 6799999995 6799999999999999994 5556666653 467799998864
|
| >4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium binding site, enzyme function initiativ; 1.60A {Deinococcus radiodurans} PDB: 4eel_A* 4een_A | Back alignment and structure |
|---|
Probab=99.91 E-value=7.6e-24 Score=231.35 Aligned_cols=214 Identities=22% Similarity=0.293 Sum_probs=182.9
Q ss_pred CCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHh-HhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 001380 77 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVED-FLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYL 155 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (1089)
+++|+|+||+||||+++...+..++.++++++|+.....+ +..+.+.........+....+.... ......+.+.+.
T Consensus 26 ~~ik~i~fDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 103 (259)
T 4eek_A 26 APFDAVLFDLDGVLVESEGIIAQVWQSVLAERGLHLDLTEIAMYFTGQRFDGVLAYLAQQHDFVPP--PDFLDVLETRFN 103 (259)
T ss_dssp CCCSEEEEESBTTTEECHHHHHHHHHHHHHHTTCCCCHHHHHHHTTTCCHHHHHHHHHHHHCCCCC--TTHHHHHHHHHH
T ss_pred cCCCEEEECCCCCcccCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCC--HHHHHHHHHHHH
Confidence 4689999999999999999999999999999999877654 4566788888888777766664431 233444555555
Q ss_pred HHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccE-EEEcCCcc-CCCCCHHHHHHHHH
Q 001380 156 DKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDA-IVSADAFE-NLKPAPDIFLSASK 233 (1089)
Q Consensus 156 ~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~-i~~~~~~~-~~KP~~~~~~~~l~ 233 (1089)
+.+ ....++||+.++|+.|+++|++++|+||.....++..++.+|+. .+|+. ++++++.. ..||++++|+.+++
T Consensus 104 ~~~---~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~-~~f~~~i~~~~~~~~~~Kp~~~~~~~~~~ 179 (259)
T 4eek_A 104 AAM---TGVTAIEGAAETLRALRAAGVPFAIGSNSERGRLHLKLRVAGLT-ELAGEHIYDPSWVGGRGKPHPDLYTFAAQ 179 (259)
T ss_dssp HHH---TTCEECTTHHHHHHHHHHHTCCEEEECSSCHHHHHHHHHHTTCH-HHHCSCEECGGGGTTCCTTSSHHHHHHHH
T ss_pred HHh---ccCCcCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHhcChH-hhccceEEeHhhcCcCCCCChHHHHHHHH
Confidence 554 23478999999999999999999999999999999999999996 99999 99999999 99999999999999
Q ss_pred HcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC-C----HHHHhhcCCcEEecCcccCCHHHHHhcc
Q 001380 234 ILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL-S----EERLKEASPSLIRKEIGSVSLNDILTGG 298 (1089)
Q Consensus 234 ~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~-~----~~~l~~~~~d~vi~dl~el~i~~ll~~~ 298 (1089)
++|+++++|++|||+.+|+++|+++|+.+++|.+|. . .+++...+|++++.++.|| .++|...
T Consensus 180 ~lgi~~~~~i~iGD~~~Di~~a~~aG~~~i~v~~g~~~~~~~~~~~~~~~ad~vi~~l~el--~~~l~~~ 247 (259)
T 4eek_A 180 QLGILPERCVVIEDSVTGGAAGLAAGATLWGLLVPGHPHPDGAAALSRLGAARVLTSHAEL--RAALAEA 247 (259)
T ss_dssp HTTCCGGGEEEEESSHHHHHHHHHHTCEEEEECCTTSCCSSCHHHHHHHTCSEEECSHHHH--HHHHHHT
T ss_pred HcCCCHHHEEEEcCCHHHHHHHHHCCCEEEEEccCCCcccccHHHHHhcCcchhhCCHHHH--HHHHHhc
Confidence 999999999999999999999999999999999874 3 6778888999999999998 6666543
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-22 Score=232.36 Aligned_cols=237 Identities=17% Similarity=0.249 Sum_probs=191.7
Q ss_pred CCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeE
Q 001380 612 NNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTV 691 (1089)
Q Consensus 612 ~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v 691 (1089)
...|++++. ++|.++++++.....+... +..|.||++++.++.|||+|..+++|++++++++.+
T Consensus 87 ~~~l~~~~~--~~I~~i~~~~~~~~~~~~~--------------~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~ 150 (386)
T 3v65_B 87 EPVLLFANR--IDIRQVLPHRSEYTLLLNN--------------LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV 150 (386)
T ss_dssp CCEEEEECB--SCEEEECTTSCCCEEEECS--------------CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE
T ss_pred cceeEeecC--ccceeeccCCCcEEEEecC--------------CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc
Confidence 567777765 6899999987655544332 458999999987778999999999999999998888
Q ss_pred EEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCcc
Q 001380 692 RTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTS 771 (1089)
Q Consensus 692 ~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~ 771 (1089)
+++...+ +..|.+|++++.++.||+++.++++|+++++++...+.+.. ..
T Consensus 151 ~~~~~~~----------------~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~--------------~~ 200 (386)
T 3v65_B 151 EEVVSTG----------------LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW--------------QS 200 (386)
T ss_dssp EEEECSS----------------CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEEC--------------SS
T ss_pred EEEEeCC----------------CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec--------------CC
Confidence 7776433 45899999999888999999999999999988766555542 34
Q ss_pred ccCCceEEEcCCCCEEEEEeCCC-CeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEcc-CCc
Q 001380 772 FAQPSGISLSPDFMEIYVADSES-SSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAK-NGQ 849 (1089)
Q Consensus 772 ~~~P~glav~~~g~~lyvad~~~-~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~-~G~ 849 (1089)
+..|.||+++|+++.|||+|.+. ++|+++++++...+.+... .+..|.||++|+ +++
T Consensus 201 l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~---------------------~~~~PnGlavd~~~~~ 259 (386)
T 3v65_B 201 LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT---------------------HLFWPNGLTIDYAGRR 259 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS---------------------SCSCEEEEEEEGGGTE
T ss_pred CCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEEC---------------------CCCCeeeEEEeCCCCE
Confidence 66899999999877999999998 9999999987666555321 166899999995 568
Q ss_pred EEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeC-CCCCceEE
Q 001380 850 IYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDL-NKEEPELQ 928 (1089)
Q Consensus 850 lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~-~~~~~~~~ 928 (1089)
|||+|+.+++|.++|.++....++... .+..|.||+++ ++.|||+|+.+++|.+++. .+. .+.
T Consensus 260 lY~aD~~~~~I~~~d~dG~~~~~~~~~-------------~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~--~~~ 323 (386)
T 3v65_B 260 MYWVDAKHHVIERANLDGSHRKAVISQ-------------GLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGK--NQE 323 (386)
T ss_dssp EEEEETTTTEEEEECTTSCSCEEEECS-------------SCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC--SCE
T ss_pred EEEEECCCCEEEEEeCCCCeeEEEEEC-------------CCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCc--ceE
Confidence 999999999999999987766666532 36789999996 5789999999999999994 444 445
Q ss_pred EEe
Q 001380 929 TLE 931 (1089)
Q Consensus 929 ~l~ 931 (1089)
++.
T Consensus 324 ~i~ 326 (386)
T 3v65_B 324 IIR 326 (386)
T ss_dssp EEE
T ss_pred EEc
Confidence 554
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.91 E-value=7.7e-23 Score=224.10 Aligned_cols=240 Identities=19% Similarity=0.321 Sum_probs=186.7
Q ss_pred CCceEEEeecCCeEEE-EeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCE
Q 001380 602 FPGKLAIDILNNRLFI-SDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHA 680 (1089)
Q Consensus 602 ~P~~vavd~~~g~L~v-sd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~ 680 (1089)
.|.++++++ +|+||| ++..+++|.+++.++.....+... .+..|.+|+++++|+ |||++. ++.
T Consensus 25 ~p~~i~~~~-~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~-------------~~~~p~~i~~~~~g~-l~v~~~-~~~ 88 (270)
T 1rwi_B 25 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTTVLPFN-------------GLYQPQGLAVDGAGT-VYVTDF-NNR 88 (270)
T ss_dssp CEEEEEECT-TCCEEEEECSSSCEEEEECC-----EECCCC-------------SCCSCCCEEECTTCC-EEEEET-TTE
T ss_pred CccceEECC-CCCEEEEccCCCCcEEEecCCCcccceEeeC-------------CcCCcceeEECCCCC-EEEEcC-CCE
Confidence 999999997 788999 999999999999876554433211 245899999999998 999998 889
Q ss_pred EEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccc
Q 001380 681 LREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYER 760 (1089)
Q Consensus 681 I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~ 760 (1089)
|++++.+++.+..+... .+..|++|+++++| .+||++.++++|++++..+.......
T Consensus 89 i~~~d~~~~~~~~~~~~----------------~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~~~------ 145 (270)
T 1rwi_B 89 VVTLAAGSNNQTVLPFD----------------GLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQTVLP------ 145 (270)
T ss_dssp EEEECTTCSCCEECCCC----------------SCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCCSCEECC------
T ss_pred EEEEeCCCceEeeeecC----------------CcCCCcceEECCCC-CEEEEECCCCEEEEEECCCceeEeec------
Confidence 99999988766554321 13579999999987 69999999999999975443322211
Q ss_pred cCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCce
Q 001380 761 NLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPL 840 (1089)
Q Consensus 761 ~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~ 840 (1089)
...+..|.+|+++++| +|||++..+++|++++++++....... ..+..|.
T Consensus 146 --------~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~~~~---------------------~~~~~p~ 195 (270)
T 1rwi_B 146 --------FTGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNNQVVLPF---------------------TDITAPW 195 (270)
T ss_dssp --------CCSCCSCCCEEECTTC-CEEEEEGGGTEEEEECTTTCCEEECCC---------------------SSCCSEE
T ss_pred --------cccCCCceeEEEeCCC-CEEEEECCCCEEEEEecCCCceEeecc---------------------cCCCCce
Confidence 1235579999999998 799999999999999988655432210 1146799
Q ss_pred EEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeC
Q 001380 841 GVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDL 920 (1089)
Q Consensus 841 gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~ 920 (1089)
+|+++++|++||++..+++|.++++++.....+.. ..+..|.+|+++++|+|||++..+++|+++++
T Consensus 196 ~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~-------------~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~ 262 (270)
T 1rwi_B 196 GIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPF-------------TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS 262 (270)
T ss_dssp EEEECTTCCEEEEETTTSCEEEECTTCSCCEECCC-------------CSCSCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred EEEECCCCCEEEEECCCCcEEEEcCCCCcceeecc-------------CCCCCceeEEECCCCCEEEEECCCCEEEEEcC
Confidence 99999999999999999999999998765544321 13577999999999999999999999999998
Q ss_pred CCC
Q 001380 921 NKE 923 (1089)
Q Consensus 921 ~~~ 923 (1089)
...
T Consensus 263 ~~~ 265 (270)
T 1rwi_B 263 LEH 265 (270)
T ss_dssp CGG
T ss_pred CCc
Confidence 765
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=4.8e-22 Score=218.23 Aligned_cols=242 Identities=19% Similarity=0.266 Sum_probs=184.7
Q ss_pred CeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEE
Q 001380 613 NRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVR 692 (1089)
Q Consensus 613 g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~ 692 (1089)
..||+++. ++|.+++.+|.....+... . .......+|.|++++++++.|||+|..+++|.+++++++.+.
T Consensus 2 ~~l~~~~~--~~I~~~~~~g~~~~~~~~~--~------~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~ 71 (267)
T 1npe_A 2 THLLFAQT--GKIERLPLERNTMKKTEAK--A------FLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT 71 (267)
T ss_dssp EEEEEEEE--EEEEEEEESSSCBCGGGCE--E------EEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE
T ss_pred cEEEEEcC--CeEEEEEecCcccccccce--e------eecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE
Confidence 36889885 6899999987643211000 0 000113478999999988789999999999999999887766
Q ss_pred EEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccc
Q 001380 693 TLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSF 772 (1089)
Q Consensus 693 ~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~ 772 (1089)
.+...+ +..|.+|++++.++.|||++.++++|.+++.++.....+.. ..+
T Consensus 72 ~~~~~~----------------~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~--------------~~~ 121 (267)
T 1npe_A 72 TIIRQD----------------LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD--------------TGL 121 (267)
T ss_dssp EEECTT----------------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------------SSC
T ss_pred EEEECC----------------CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEE--------------CCC
Confidence 654211 45899999999888999999999999999987655444432 234
Q ss_pred cCCceEEEcCCCCEEEEEeCC--CCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccC-Cc
Q 001380 773 AQPSGISLSPDFMEIYVADSE--SSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKN-GQ 849 (1089)
Q Consensus 773 ~~P~glav~~~g~~lyvad~~--~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~-G~ 849 (1089)
..|.+|++++++++|||+|.. +++|+++++++...+.+.. ..+..|.|+++|++ ++
T Consensus 122 ~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~---------------------~~~~~P~gia~d~~~~~ 180 (267)
T 1npe_A 122 VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ---------------------DNLGLPNGLTFDAFSSQ 180 (267)
T ss_dssp SSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEEC---------------------TTCSCEEEEEEETTTTE
T ss_pred CCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEE---------------------CCCCCCcEEEEcCCCCE
Confidence 679999999977799999987 6899999988654443321 12568999999986 58
Q ss_pred EEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCCCceEEE
Q 001380 850 IYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKEEPELQT 929 (1089)
Q Consensus 850 lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~~~~~~~ 929 (1089)
|||+|..+++|.++|++++...++.. .+..|.||+++ +++|||+|..+++|.++++.+. ..+.+
T Consensus 181 lyv~d~~~~~I~~~~~~g~~~~~~~~--------------~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g-~~~~~ 244 (267)
T 1npe_A 181 LCWVDAGTHRAECLNPAQPGRRKVLE--------------GLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAIS-KEMDT 244 (267)
T ss_dssp EEEEETTTTEEEEEETTEEEEEEEEE--------------CCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTT-EEEEE
T ss_pred EEEEECCCCEEEEEecCCCceEEEec--------------CCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCC-CceEE
Confidence 99999999999999998766655542 24679999998 6799999999999999999865 24455
Q ss_pred Ee
Q 001380 930 LE 931 (1089)
Q Consensus 930 l~ 931 (1089)
+.
T Consensus 245 i~ 246 (267)
T 1npe_A 245 FH 246 (267)
T ss_dssp EC
T ss_pred Ec
Confidence 54
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.6e-22 Score=243.18 Aligned_cols=210 Identities=18% Similarity=0.218 Sum_probs=164.3
Q ss_pred CCCCCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEE-EEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEE
Q 001380 595 LFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFI-VQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYV 673 (1089)
Q Consensus 595 ~~~~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~-~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyV 673 (1089)
....++..|.+|++++.+++|||+|..+++|.+++.+|... ..+... .+..|.|||+|+.++.|||
T Consensus 34 ~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~-------------~~~~P~GlAvD~~~~~ly~ 100 (619)
T 3s94_A 34 IVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS-------------GLLSPDGLACDWLGEKLYW 100 (619)
T ss_dssp --CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECS-------------SCSCEEEEEEETTTTEEEE
T ss_pred EEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeC-------------CCCCcCeEEEEecCCEEEE
Confidence 34567899999999998999999999999999999998632 222222 1458999999997777999
Q ss_pred EECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC-CcEEEEEECCCCeEEE
Q 001380 674 ADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG-QHQIWEHSTVDGVTRA 752 (1089)
Q Consensus 674 aD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~-~~~I~~~~~~~g~~~~ 752 (1089)
+|..+++|.++++++...+++.. ..+..|++|+++|.++.|||+|++ +++|++.+.++.....
T Consensus 101 ~d~~~~~I~v~~~dG~~~~~l~~----------------~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~ 164 (619)
T 3s94_A 101 TDSETNRIEVSNLDGSLRKVLFW----------------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI 164 (619)
T ss_dssp EETTTTEEEEEETTSCSCEEEEC----------------SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred EeCCCCEEEEEECCCCCEEEEEe----------------CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEE
Confidence 99999999999999887777763 125689999999998899999988 6799999988766555
Q ss_pred EeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccc
Q 001380 753 FSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGS 832 (1089)
Q Consensus 753 ~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~ 832 (1089)
+.. ..+.+|+||++|+++++|||+|.++++|++++++++..+.+..
T Consensus 165 l~~--------------~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~-------------------- 210 (619)
T 3s94_A 165 IIN--------------SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK-------------------- 210 (619)
T ss_dssp EEC--------------SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC------------------------
T ss_pred EEe--------------CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEe--------------------
Confidence 542 2467899999999878999999999999999998655443321
Q ss_pred cccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCe
Q 001380 833 EVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNR 869 (1089)
Q Consensus 833 ~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~ 869 (1089)
..+.+|.||+++.+ +|||+|+++++|.++|..++.
T Consensus 211 -~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 211 -GSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp ------CCCEEESSS-EEEEECTTTCSEEEEESSSCC
T ss_pred -CCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCc
Confidence 12679999999865 999999999999999986653
|
| >2hdo_A Phosphoglycolate phosphatase; NP_784602.1, structur genomics, PSI-2, protein structure initiative, joint center structural genomics; HET: MSE; 1.50A {Lactobacillus plantarum} SCOP: c.108.1.6 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-23 Score=221.93 Aligned_cols=201 Identities=18% Similarity=0.243 Sum_probs=166.3
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDK 157 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (1089)
++|+|+||+||||+++...+..++.++++++|...+.+.+....+.....+++.+ +...........++.+.+..
T Consensus 3 ~~k~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~- 77 (209)
T 2hdo_A 3 TYQALMFDIDGTLTNSQPAYTTVMREVLATYGKPFSPAQAQKTFPMAAEQAMTEL----GIAASEFDHFQAQYEDVMAS- 77 (209)
T ss_dssp CCSEEEECSBTTTEECHHHHHHHHHHHHHTTTCCCCHHHHHHHTTSCHHHHHHHT----TCCGGGHHHHHHHHHHHHTT-
T ss_pred cccEEEEcCCCCCcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCcHHHHHHHc----CCCHHHHHHHHHHHHHHHhh-
Confidence 5799999999999999999999999999999998888888888888776665543 32211122222222222211
Q ss_pred hcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCC
Q 001380 158 YAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNV 237 (1089)
Q Consensus 158 ~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv 237 (1089)
+ .....++||+.++|+.|+++ ++++|+||.....++..++++|+. .+|+.++++++.+..||++++|.++++++|+
T Consensus 78 ~--~~~~~~~~~~~~~l~~l~~~-~~~~i~s~~~~~~~~~~l~~~~l~-~~f~~~~~~~~~~~~KP~~~~~~~~~~~~~~ 153 (209)
T 2hdo_A 78 H--YDQIELYPGITSLFEQLPSE-LRLGIVTSQRRNELESGMRSYPFM-MRMAVTISADDTPKRKPDPLPLLTALEKVNV 153 (209)
T ss_dssp C--GGGCEECTTHHHHHHHSCTT-SEEEEECSSCHHHHHHHHTTSGGG-GGEEEEECGGGSSCCTTSSHHHHHHHHHTTC
T ss_pred h--cccCCcCCCHHHHHHHHHhc-CcEEEEeCCCHHHHHHHHHHcChH-hhccEEEecCcCCCCCCCcHHHHHHHHHcCC
Confidence 1 11247899999999999999 999999999999999999999996 9999999999999999999999999999999
Q ss_pred CCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC-CHHHHhhcCCcEEecCcccC
Q 001380 238 PTSECIVIEDALAGVQAAKAAQMRCIAVTTTL-SEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 238 ~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~-~~~~l~~~~~d~vi~dl~el 289 (1089)
++++|++|||+.+|+.+|+++|+.++++++|. ..+.+.. |++++.++.++
T Consensus 154 ~~~~~i~vGD~~~Di~~a~~aG~~~~~~~~~~~~~~~~~~--a~~~~~~~~el 204 (209)
T 2hdo_A 154 APQNALFIGDSVSDEQTAQAANVDFGLAVWGMDPNADHQK--VAHRFQKPLDI 204 (209)
T ss_dssp CGGGEEEEESSHHHHHHHHHHTCEEEEEGGGCCTTGGGSC--CSEEESSGGGG
T ss_pred CcccEEEECCChhhHHHHHHcCCeEEEEcCCCCChhhhcc--CCEEeCCHHHH
Confidence 99999999999999999999999999999876 3455544 99999999887
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-21 Score=220.75 Aligned_cols=238 Identities=16% Similarity=0.181 Sum_probs=183.4
Q ss_pred eEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCC----C
Q 001380 614 RLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVN----D 689 (1089)
Q Consensus 614 ~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~----g 689 (1089)
.|+++.. +.|.+++.++.....+... +..|.|+++++.++.|||+|..+++|+++++++ .
T Consensus 3 ~ll~~~~--~~I~~i~~~~~~~~~~~~~--------------~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~ 66 (316)
T 1ijq_A 3 YLFFTNR--HEVRKMTLDRSEYTSLIPN--------------LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS 66 (316)
T ss_dssp EEEEECB--SSEEEEETTSCCCEEEECS--------------CSSEEEEEEETTTTEEEEEETTTTEEEEEEC-------
T ss_pred EEEEECC--CeEEEEECCCcceEehhcC--------------CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCc
Confidence 4677775 6799999986544333221 458999999998878999999999999999876 2
Q ss_pred eEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCC
Q 001380 690 TVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLN 769 (1089)
Q Consensus 690 ~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~ 769 (1089)
...++... .+..|.+|++++.++.||++|.++++|.++++++.....+..
T Consensus 67 ~~~~~~~~----------------~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-------------- 116 (316)
T 1ijq_A 67 SYDTVISR----------------DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-------------- 116 (316)
T ss_dssp -CEEEECS----------------SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE--------------
T ss_pred ccEEEEeC----------------CCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEE--------------
Confidence 33333211 246899999998788999999999999999998776665541
Q ss_pred ccccCCceEEEcCCCCEEEEEeCCC-CeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccC-
Q 001380 770 TSFAQPSGISLSPDFMEIYVADSES-SSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKN- 847 (1089)
Q Consensus 770 ~~~~~P~glav~~~g~~lyvad~~~-~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~- 847 (1089)
..+..|.||+++|++++|||+|.+. ++|.++++++...+.+... .+..|.||++|++
T Consensus 117 ~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~---------------------~~~~P~gla~d~~~ 175 (316)
T 1ijq_A 117 ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE---------------------NIQWPNGITLDLLS 175 (316)
T ss_dssp CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS---------------------SCSCEEEEEEETTT
T ss_pred CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEEC---------------------CCCCceEEEEeccC
Confidence 2356899999999777999999886 8999999986655544321 2678999999974
Q ss_pred CcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCCCceE
Q 001380 848 GQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKEEPEL 927 (1089)
Q Consensus 848 G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~~~~~ 927 (1089)
++|||+|+.+++|.++|.++....++...+ ..+..|.||+++ +|+|||+|+.+++|.++++.++. .+
T Consensus 176 ~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~-----------~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~-~~ 242 (316)
T 1ijq_A 176 GRLYWVDSKLHSISSIDVNGGNRKTILEDE-----------KRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS-DV 242 (316)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEEECT-----------TTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC-CC
T ss_pred CEEEEEECCCCeEEEEecCCCceEEEeecC-----------CccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc-ce
Confidence 689999999999999999887777775321 146789999998 47999999999999999985431 34
Q ss_pred EEEe
Q 001380 928 QTLE 931 (1089)
Q Consensus 928 ~~l~ 931 (1089)
.++.
T Consensus 243 ~~i~ 246 (316)
T 1ijq_A 243 NLLA 246 (316)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5554
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-22 Score=235.72 Aligned_cols=237 Identities=20% Similarity=0.306 Sum_probs=186.7
Q ss_pred CCCCCCCCCCCC-ccccCCcceeEEee-CCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCc
Q 001380 641 SGEEGLRDGSFD-DATFNRPQGLAYNA-KKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSP 718 (1089)
Q Consensus 641 ~g~~g~~dG~~~-~~~f~~P~gla~d~-~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P 718 (1089)
.+..|+.||.+. .++|.+|.+|+++| +++.|||+|.. ++|++||++++.++++... +..|
T Consensus 120 ~g~~g~~dG~~~~~~~~~~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~~~~~-----------------~~~P 181 (430)
T 3tc9_A 120 NTKYDLKDGPFDDCGGFGGAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVSTVYSG-----------------LSKV 181 (430)
T ss_dssp TTBCCBCCEEGGGCBCCSCCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEEEECC-----------------CSCE
T ss_pred CCCccccCCCHHHccCCCCCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEEEecC-----------------CCCc
Confidence 457778899884 45799999999997 35559999987 9999999999999988741 3589
Q ss_pred eeEEEecCCCEEEEEECCCc----EEEEEECCCCeE--EEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeC
Q 001380 719 WDVCYKPINEKVYIAMAGQH----QIWEHSTVDGVT--RAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADS 792 (1089)
Q Consensus 719 ~~la~~~~g~~lyvad~~~~----~I~~~~~~~g~~--~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~ 792 (1089)
.+|+++++|+.|||++.+++ .+..++..+... ..+ ..+..|+++++++++++|||+|.
T Consensus 182 ~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l----------------~~~~~p~giavdp~~g~lyv~d~ 245 (430)
T 3tc9_A 182 RTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITEL----------------TKGQNCNGAETHPINGELYFNSW 245 (430)
T ss_dssp EEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEE----------------EECSSCCCEEECTTTCCEEEEET
T ss_pred ceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeee----------------ccCCCceEEEEeCCCCEEEEEEC
Confidence 99999999988999998644 455566543322 111 23678999999995459999999
Q ss_pred CCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEEEeCCCCEEEEEeCCC--Ce
Q 001380 793 ESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADSYNHKIKKLDPAS--NR 869 (1089)
Q Consensus 793 ~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~~n~~I~~~d~~~--~~ 869 (1089)
.+++|++++++++....+... + ....|.+|+++++|+ +||+|..+|+|.+++.++ +.
T Consensus 246 ~~~~V~~~~~~~~~~~~~~~~-----------~---------~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~ 305 (430)
T 3tc9_A 246 NAGQVFRYDFTTQETTPLFTI-----------Q---------DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKR 305 (430)
T ss_dssp TTTEEEEEETTTTEEEEEEEC-----------S---------SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred CCCEEEEEECCCCcEEEEEEc-----------C---------CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCccccc
Confidence 999999999986655333210 1 024799999999998 999999999999998764 32
Q ss_pred ---EEEEecc-CCCCCCCCcccccccCCCc-eEEEc--------cCCcEEEEECCCCEEEEEeCCCCCceEEEEeecc
Q 001380 870 ---VSTLAGI-GKAGFKDGAALAAQLSEPA-GIIEA--------QNGNLFIADTNNNIIRYLDLNKEEPELQTLELKG 934 (1089)
Q Consensus 870 ---v~t~~g~-g~~g~~~g~~~~~~l~~P~-gi~vd--------~~G~lyVad~~n~~I~~~~~~~~~~~~~~l~~~~ 934 (1089)
+.++++. +..|+.+|....++|+.|. |++++ ++|+|||+|+.||+|+++++++ .+.++.+.|
T Consensus 306 ~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~G---~v~~~~g~g 380 (430)
T 3tc9_A 306 LTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQG---RVTTFAGRG 380 (430)
T ss_dssp ECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTTS---EEEEEEECC
T ss_pred ccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCCC---cEEEEEeCC
Confidence 4677776 6778888888888999999 89994 5689999999999999999765 467777553
|
| >3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB: 3i76_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-22 Score=216.79 Aligned_cols=212 Identities=15% Similarity=0.212 Sum_probs=166.3
Q ss_pred CCCCCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCC-------------CHHH----HHHHHHhhc
Q 001380 74 SKWGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGT-------------GEAN----FLGGVASVK 136 (1089)
Q Consensus 74 ~~~~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~-------------~~~~----~~~~~~~~~ 136 (1089)
+||+++|+|+||+||||+++...+..++.++++++|+.........+.+. .... ....+....
T Consensus 2 n~mm~~k~i~fDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (238)
T 3ed5_A 2 NAMKRYRTLLFDVDDTILDFQAAEALALRLLFEDQNIPLTNDMKAQYKTINQGLWRAFEEGKMTRDEVVNTRFSALLKEY 81 (238)
T ss_dssp --CCCCCEEEECCBTTTBCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHT
T ss_pred CccccCCEEEEcCcCcCcCCchhHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHc
Confidence 34567899999999999999999999999999999998776544322211 1111 112222223
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcC
Q 001380 137 GVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSAD 216 (1089)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~ 216 (1089)
+... ... .+.+.|.+.+... ..++||+.++|+.|+++ ++++|+||.....++..++.+|+. .+|+.+++++
T Consensus 82 ~~~~-~~~----~~~~~~~~~~~~~--~~~~~~~~~~l~~l~~~-~~~~i~t~~~~~~~~~~l~~~~l~-~~f~~~~~~~ 152 (238)
T 3ed5_A 82 GYEA-DGA----LLEQKYRRFLEEG--HQLIDGAFDLISNLQQQ-FDLYIVTNGVSHTQYKRLRDSGLF-PFFKDIFVSE 152 (238)
T ss_dssp TCCC-CHH----HHHHHHHHHHTTC--CCBCTTHHHHHHHHHTT-SEEEEEECSCHHHHHHHHHHTTCG-GGCSEEEEGG
T ss_pred CCCC-cHH----HHHHHHHHHHHhc--CCCCccHHHHHHHHHhc-CeEEEEeCCCHHHHHHHHHHcChH-hhhheEEEec
Confidence 3322 222 3333444444333 37899999999999999 999999999999999999999996 9999999999
Q ss_pred CccCCCCCHHHHHHHHHHcC-CCCCcEEEEcCCh-hhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHH
Q 001380 217 AFENLKPAPDIFLSASKILN-VPTSECIVIEDAL-AGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDI 294 (1089)
Q Consensus 217 ~~~~~KP~~~~~~~~l~~lg-v~p~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~l 294 (1089)
+.+..||++.+|+++++++| ++|++|++|||+. +|+++|+++|+.++++.++... ......|++++.++.+| .++
T Consensus 153 ~~~~~kp~~~~~~~~~~~~g~~~~~~~i~vGD~~~~Di~~a~~aG~~~i~~~~~~~~-~~~~~~ad~v~~~~~el--~~~ 229 (238)
T 3ed5_A 153 DTGFQKPMKEYFNYVFERIPQFSAEHTLIIGDSLTADIKGGQLAGLDTCWMNPDMKP-NVPEIIPTYEIRKLEEL--YHI 229 (238)
T ss_dssp GTTSCTTCHHHHHHHHHTSTTCCGGGEEEEESCTTTTHHHHHHTTCEEEEECTTCCC-CTTCCCCSEEESSGGGH--HHH
T ss_pred ccCCCCCChHHHHHHHHHcCCCChhHeEEECCCcHHHHHHHHHCCCEEEEECCCCCC-CcccCCCCeEECCHHHH--HHH
Confidence 99999999999999999999 9999999999998 9999999999999999987532 33456899999999998 666
Q ss_pred Hhc
Q 001380 295 LTG 297 (1089)
Q Consensus 295 l~~ 297 (1089)
|..
T Consensus 230 l~~ 232 (238)
T 3ed5_A 230 LNI 232 (238)
T ss_dssp HTC
T ss_pred HHh
Confidence 654
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=99.90 E-value=7.6e-22 Score=229.43 Aligned_cols=227 Identities=21% Similarity=0.257 Sum_probs=180.0
Q ss_pred CCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCE----EEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEE
Q 001380 598 SPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNF----IVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYV 673 (1089)
Q Consensus 598 ~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~----~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyV 673 (1089)
..+..|.+|++|+.+++|||+|..+++|.+++.+|.. ...+... .+..|.|||+|+.++.|||
T Consensus 109 ~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~-------------~~~~p~glavD~~~~~lY~ 175 (400)
T 3p5b_L 109 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-------------DIQAPDGLAVDWIHSNIYW 175 (400)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS-------------SCSCEEEEEEETTTTEEEE
T ss_pred cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC-------------CCCCcccEEEEecCCceEE
Confidence 4578899999998899999999999999999998732 2222221 2568999999986667999
Q ss_pred EECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC-CcEEEEEECCCCeEEE
Q 001380 674 ADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG-QHQIWEHSTVDGVTRA 752 (1089)
Q Consensus 674 aD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~-~~~I~~~~~~~g~~~~ 752 (1089)
+|..+++|.+++++++..+++... .+..|.+|+++|.++.||++|++ +++|++++.++...+.
T Consensus 176 ~d~~~~~I~~~~~~g~~~~~l~~~----------------~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~ 239 (400)
T 3p5b_L 176 TDSVLGTVSVADTKGVKRKTLFRE----------------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 239 (400)
T ss_dssp EETTTTEEEEECTTTCSEEEEEEC----------------SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE
T ss_pred EECCCCeEEEEeCCCCceEEEEeC----------------CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE
Confidence 999999999999998887777632 25689999999988899999988 4899999988766665
Q ss_pred EeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccc
Q 001380 753 FSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGS 832 (1089)
Q Consensus 753 ~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~ 832 (1089)
+.. ..+.+|+||++|+++++|||+|+.+++|++++++++..+++...
T Consensus 240 ~~~--------------~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~------------------- 286 (400)
T 3p5b_L 240 LVT--------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED------------------- 286 (400)
T ss_dssp EEC--------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEEC-------------------
T ss_pred EEE--------------CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeC-------------------
Confidence 542 34678999999988889999999999999999987766655431
Q ss_pred cccccCceEEEEccCCcEEEEeCCCCEEEEEeCC-CCeEEEEeccCCCCCCCCcccccccCCCceEEEcc
Q 001380 833 EVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPA-SNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQ 901 (1089)
Q Consensus 833 ~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~-~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~ 901 (1089)
...+.+|.||+++ ++.|||+|+++++|.++|+. +..+.++.. .+..|.+|++..
T Consensus 287 ~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~--------------~~~~p~~i~v~~ 341 (400)
T 3p5b_L 287 EKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAE--------------NLLSPEDMVLFH 341 (400)
T ss_dssp SSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEEC--------------SCSCEEEEEEES
T ss_pred CCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEec--------------CCCCCceEEEEe
Confidence 1137799999996 67999999999999999954 445555542 356788888753
|
| >3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=4.9e-23 Score=221.39 Aligned_cols=210 Identities=19% Similarity=0.265 Sum_probs=168.5
Q ss_pred CCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCC---CHHhHhhhcC--------------CCHHHH----HHHHHhh
Q 001380 77 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEV---TVEDFLPFMG--------------TGEANF----LGGVASV 135 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~---~~~~~~~~~~--------------~~~~~~----~~~~~~~ 135 (1089)
|++|+|+||+||||+++...+..++.++++++|+.. +.+.+...+. .....+ ...+...
T Consensus 3 m~~k~i~fDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (240)
T 3qnm_A 3 LKYKNLFFDLDDTIWAFSRNARDTFEEVYQKYSFDRYFDSFDHYYTLYQRRNTELWLEYGEGKVTKEELNRQRFFYPLQA 82 (240)
T ss_dssp CCCSEEEECCBTTTBCHHHHHHHHHHHHHHHTTGGGTSSSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred CCceEEEEcCCCCCcCchhhHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999875 5544432221 111111 2223333
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEc
Q 001380 136 KGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSA 215 (1089)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~ 215 (1089)
.+.. .......+.+.+.+.+... ..++||+.++|+.|+ +|++++|+||.....++..++.+|+. .+|+.++++
T Consensus 83 ~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~l~-~g~~~~i~sn~~~~~~~~~l~~~~l~-~~f~~~~~~ 155 (240)
T 3qnm_A 83 VGVE---DEALAERFSEDFFAIIPTK--SGLMPHAKEVLEYLA-PQYNLYILSNGFRELQSRKMRSAGVD-RYFKKIILS 155 (240)
T ss_dssp TTCC---CHHHHHHHHHHHHHHGGGC--CCBSTTHHHHHHHHT-TTSEEEEEECSCHHHHHHHHHHHTCG-GGCSEEEEG
T ss_pred cCCC---cHHHHHHHHHHHHHHhhhc--CCcCccHHHHHHHHH-cCCeEEEEeCCchHHHHHHHHHcChH-hhceeEEEe
Confidence 3432 4455556666666655443 378999999999999 99999999999999999999999996 999999999
Q ss_pred CCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCCh-hhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHH
Q 001380 216 DAFENLKPAPDIFLSASKILNVPTSECIVIEDAL-AGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDI 294 (1089)
Q Consensus 216 ~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~l 294 (1089)
++.+..||++.+|+.+++++|++|++|++|||++ +|+++|+++|+.+++++++.. ......|+++++++.|+ ..+
T Consensus 156 ~~~~~~kp~~~~~~~~~~~lgi~~~~~~~iGD~~~~Di~~a~~aG~~~~~~~~~~~--~~~~~~~d~vi~sl~e~--~~~ 231 (240)
T 3qnm_A 156 EDLGVLKPRPEIFHFALSATQSELRESLMIGDSWEADITGAHGVGMHQAFYNVTER--TVFPFQPTYHIHSLKEL--MNL 231 (240)
T ss_dssp GGTTCCTTSHHHHHHHHHHTTCCGGGEEEEESCTTTTHHHHHHTTCEEEEECCSCC--CCCSSCCSEEESSTHHH--HHH
T ss_pred ccCCCCCCCHHHHHHHHHHcCCCcccEEEECCCchHhHHHHHHcCCeEEEEcCCCC--CCcCCCCceEECCHHHH--HHH
Confidence 9999999999999999999999999999999996 999999999999999999864 33456899999999998 555
Q ss_pred Hhc
Q 001380 295 LTG 297 (1089)
Q Consensus 295 l~~ 297 (1089)
+++
T Consensus 232 ~~~ 234 (240)
T 3qnm_A 232 LEG 234 (240)
T ss_dssp TC-
T ss_pred Hhc
Confidence 543
|
| >1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein S initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-22 Score=214.74 Aligned_cols=210 Identities=26% Similarity=0.395 Sum_probs=174.5
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCC-HHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVT-VEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLD 156 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1089)
++|+|+||+||||+++...+..++.++++++|.... .+.+....+.........+....++...........+.+.+.+
T Consensus 8 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (226)
T 1te2_A 8 QILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRRNELPDTLGLRIDMVVDLWYARQPWNGPSRQEVVERVIARAIS 87 (226)
T ss_dssp CCCEEEECCBTTTBCCHHHHHHHHHHHHHHTTCCGGGGGGSCCCTTCCHHHHHHHHHHHSCCSSSCHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCcCcCHHHHHHHHHHHHHHcCCCCChHHHHHHHhCCCHHHHHHHHHHHcCCCccCHHHHHHHHHHHHHH
Confidence 579999999999999999888999999999998765 4455566677766666666555555444555555555555544
Q ss_pred HhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcC
Q 001380 157 KYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILN 236 (1089)
Q Consensus 157 ~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lg 236 (1089)
.+... ..++|++.++|+.|++.|++++++||.....++..++.+++. .+|+.++++++....||++..|+++++++|
T Consensus 88 ~~~~~--~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~ 164 (226)
T 1te2_A 88 LVEET--RPLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLR-DSFDALASAEKLPYSKPHPQVYLDCAAKLG 164 (226)
T ss_dssp HHHHH--CCBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCG-GGCSEEEECTTSSCCTTSTHHHHHHHHHHT
T ss_pred HHhcc--CCcCccHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhcCcH-hhCcEEEeccccCCCCCChHHHHHHHHHcC
Confidence 43222 267999999999999999999999999999999999999996 899999999999999999999999999999
Q ss_pred CCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCC
Q 001380 237 VPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVS 290 (1089)
Q Consensus 237 v~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~ 290 (1089)
++++++++|||+.+|+++|+.+|+.++++.++....+.....|++++.++.++.
T Consensus 165 i~~~~~i~iGD~~nDi~~a~~aG~~~~~~~~~~~~~~~~~~~a~~v~~~~~el~ 218 (226)
T 1te2_A 165 VDPLTCVALEDSVNGMIASKAARMRSIVVPAPEAQNDPRFVLANVKLSSLTELT 218 (226)
T ss_dssp SCGGGEEEEESSHHHHHHHHHTTCEEEECCCTTTTTCGGGGGSSEECSCGGGCC
T ss_pred CCHHHeEEEeCCHHHHHHHHHcCCEEEEEcCCCCcccccccccCeEECCHHHHh
Confidence 999999999999999999999999999999976333334567999999999984
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=99.90 E-value=9.9e-22 Score=220.84 Aligned_cols=224 Identities=18% Similarity=0.221 Sum_probs=179.0
Q ss_pred CCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEE--EEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEE
Q 001380 598 SPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFI--VQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVAD 675 (1089)
Q Consensus 598 ~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~--~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD 675 (1089)
..+..|.++++|+.+++|||+|..+++|.+++++|... ..+.. .+..|.||++|+.++.|||+|
T Consensus 32 ~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~--------------~l~~p~glavd~~~g~ly~~d 97 (318)
T 3sov_A 32 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS--------------GLLSPDGLACDWLGEKLYWTD 97 (318)
T ss_dssp EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE--------------CCSCCCEEEEETTTTEEEEEE
T ss_pred cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcC--------------CCCCccEEEEEcCCCeEEEEE
Confidence 45677889999988899999999999999999987631 12211 156899999998777799999
Q ss_pred CCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC-CcEEEEEECCCCeEEEEe
Q 001380 676 TENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG-QHQIWEHSTVDGVTRAFS 754 (1089)
Q Consensus 676 ~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~-~~~I~~~~~~~g~~~~~~ 754 (1089)
..+++|.++++++...+++... .+..|.+|+++|.++.||++|.+ +++|++++.++...+.+.
T Consensus 98 ~~~~~I~~~~~dG~~~~~l~~~----------------~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~ 161 (318)
T 3sov_A 98 SETNRIEVSNLDGSLRKVLFWQ----------------ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII 161 (318)
T ss_dssp TTTTEEEEEETTSCSCEEEECS----------------SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred CCCCEEEEEECCCCcEEEEEeC----------------CCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEE
Confidence 9999999999988776666521 15689999999988899999987 799999998876555554
Q ss_pred CCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccc
Q 001380 755 GDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEV 834 (1089)
Q Consensus 755 g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~ 834 (1089)
. ..+..|+||++|+++++|||+|+.+++|++++.+++..+++..+
T Consensus 162 ~--------------~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~--------------------- 206 (318)
T 3sov_A 162 N--------------SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG--------------------- 206 (318)
T ss_dssp C--------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS---------------------
T ss_pred E--------------CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecC---------------------
Confidence 2 33678999999998789999999999999999987666555321
Q ss_pred cccCceEEEEccCCcEEEEeCCCCEEEEEeCCCC-eEEEEeccCCCCCCCCcccccccCCCceEEEcc
Q 001380 835 LLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASN-RVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQ 901 (1089)
Q Consensus 835 ~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~-~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~ 901 (1089)
.+.+|.|++++ .+.+||+|+++++|.++++.+| ...++.. .+..|.+|++..
T Consensus 207 ~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~--------------~~~~P~~i~v~~ 259 (318)
T 3sov_A 207 SLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGLREIHS--------------DIFSPMDIHAFS 259 (318)
T ss_dssp CCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEEC--------------CCSSCCCEEEEC
T ss_pred CCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEEeC--------------CCCCCcEEEEec
Confidence 26799999998 5689999999999999999544 4455542 356788888753
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-21 Score=225.37 Aligned_cols=240 Identities=16% Similarity=0.185 Sum_probs=187.8
Q ss_pred CCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCC--
Q 001380 612 NNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVND-- 689 (1089)
Q Consensus 612 ~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g-- 689 (1089)
...|++++. +.|.+++.++.....+... +..|.||++++.++.|||+|..+++|+++++++.
T Consensus 83 ~~~ll~~~~--~~I~~i~l~~~~~~~~~~~--------------~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~ 146 (400)
T 3p5b_L 83 IAYLFFTNR--HEVRKMTLDRSEYTSLIPN--------------LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG 146 (400)
T ss_dssp SCEEEEEET--TEEEEECTTSCSCEEEECS--------------CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----
T ss_pred cceeEEecc--ceeEEEccCCcceeEeccc--------------cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCC
Confidence 456777775 7999999997654443322 4589999999987789999999999999998762
Q ss_pred --eEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCC
Q 001380 690 --TVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSS 767 (1089)
Q Consensus 690 --~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~ 767 (1089)
...++...+ +..|.|||+++.++.|||+|.++++|+++++++.....+..
T Consensus 147 ~~~~~~~~~~~----------------~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~------------ 198 (400)
T 3p5b_L 147 VSSYDTVISRD----------------IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR------------ 198 (400)
T ss_dssp -CCCEEEECSS----------------CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE------------
T ss_pred CCcceEEEeCC----------------CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe------------
Confidence 344444222 56899999999888999999999999999998877666642
Q ss_pred CCccccCCceEEEcCCCCEEEEEeCC-CCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEcc
Q 001380 768 LNTSFAQPSGISLSPDFMEIYVADSE-SSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAK 846 (1089)
Q Consensus 768 ~~~~~~~P~glav~~~g~~lyvad~~-~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~ 846 (1089)
..+.+|.||++++.++.|||+|.+ +++|+++++++...+.+... .+.+|.||++|+
T Consensus 199 --~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~---------------------~l~~P~glavd~ 255 (400)
T 3p5b_L 199 --ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE---------------------NIQWPNGITLDL 255 (400)
T ss_dssp --CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECS---------------------SCSCEEEEEEET
T ss_pred --CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEEC---------------------CCCceEEEEEEe
Confidence 346689999999977799999987 48999999987666555321 267899999996
Q ss_pred -CCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCCCc
Q 001380 847 -NGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKEEP 925 (1089)
Q Consensus 847 -~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~~~ 925 (1089)
+++|||+|+.+++|.++|.++....++... ...+..|.||+++ +++|||+|+.+++|.+++..++.
T Consensus 256 ~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~-----------~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~- 322 (400)
T 3p5b_L 256 LSGRLYWVDSKLHSISSIDVNGGNRKTILED-----------EKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS- 322 (400)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCCCEEEEEC-----------SSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCC-
T ss_pred CCCEEEEEECCCCEEEEEeCCCCccEEEEeC-----------CCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCC-
Confidence 568999999999999999998877777532 1257889999997 56899999999999999954431
Q ss_pred eEEEEe
Q 001380 926 ELQTLE 931 (1089)
Q Consensus 926 ~~~~l~ 931 (1089)
.+.++.
T Consensus 323 ~~~~i~ 328 (400)
T 3p5b_L 323 DVNLLA 328 (400)
T ss_dssp CCEEEE
T ss_pred ceEEEe
Confidence 345554
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.2e-21 Score=234.81 Aligned_cols=286 Identities=16% Similarity=0.194 Sum_probs=209.2
Q ss_pred CCCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC
Q 001380 597 TSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT 676 (1089)
Q Consensus 597 ~~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~ 676 (1089)
..++..|.|||+|+.+++|||+|..+++|.+++++|.....+... .+..|.+|++||.+..|||+|+
T Consensus 76 ~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~-------------~l~~P~~iavdp~~G~lY~tD~ 142 (628)
T 4a0p_A 76 EFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWK-------------DLDSPRALALDPAEGFMYWTEW 142 (628)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECS-------------SCCCEEEEEEETTTTEEEEEEC
T ss_pred eCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeC-------------CCCCcccEEEccCCCeEEEeCC
Confidence 345678999999998999999999999999999999866555432 2568999999997667999998
Q ss_pred C-CCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeC
Q 001380 677 E-NHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSG 755 (1089)
Q Consensus 677 ~-n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g 755 (1089)
+ +++|.++++++...+++.. .+..|.||++|+.+++|||+|.++++|++++.+++..+.+.
T Consensus 143 g~~~~I~r~~~dG~~~~~l~~-----------------~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~- 204 (628)
T 4a0p_A 143 GGKPKIDRAAMDGSERTTLVP-----------------NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIA- 204 (628)
T ss_dssp SSSCEEEEEETTSCSCEEEEC-----------------SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-
T ss_pred CCCCEEEEEeCCCCceEEEEC-----------------CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEee-
Confidence 6 7899999999888777762 15689999999998899999999999999999876554443
Q ss_pred CCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCC-eEEEecCCCCCCC---------------
Q 001380 756 DGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGG-SRLLAGGDPIFPD--------------- 819 (1089)
Q Consensus 756 ~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~-~~~~~g~~~~~~~--------------- 819 (1089)
..+..|.||+++. + +|||+|..+++|.+++..+|. .+++..+.. .+.
T Consensus 205 --------------~~l~~P~glav~~-~-~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~-~p~~i~v~~~~~q~~~n~ 267 (628)
T 4a0p_A 205 --------------DDLPHPFGLTQYQ-D-YIYWTDWSRRSIERANKTSGQNRTIIQGHLD-YVMDILVFHSSRQSGWNE 267 (628)
T ss_dssp --------------ECCSCEEEEEEET-T-EEEEEETTTTEEEEEETTTCCSCEEEECSCC-SCCEEEEECGGGSCCCCT
T ss_pred --------------ccCCCceEEEEEC-C-EEEEecCCCCEEEEEECCCCCceEEEecCCC-CcceeeeeeecccccceE
Confidence 2356899999986 3 999999999999999976554 233332110 000
Q ss_pred -----------------Cccc----cCC---CCC-------------------------cc------ccccccCceEEEE
Q 001380 820 -----------------NLFK----FGD---RDG-------------------------MG------SEVLLQHPLGVYC 844 (1089)
Q Consensus 820 -----------------~l~~----~g~---~dg-------------------------~~------~~~~l~~P~gva~ 844 (1089)
+-+. .|. .|+ .. .-..+.++.+|++
T Consensus 268 C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~ 347 (628)
T 4a0p_A 268 CASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDY 347 (628)
T ss_dssp TTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEETTEEEEECCCTTCCCCEECCCTTCSCEEEEEE
T ss_pred eccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeeccceEEEEecccccCceEEEEehhcCCceEEEE
Confidence 0000 000 011 00 0123456789999
Q ss_pred cc-CCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccC-CcEEEEECCCCEEEEEeCCC
Q 001380 845 AK-NGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQN-GNLFIADTNNNIIRYLDLNK 922 (1089)
Q Consensus 845 ~~-~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~-G~lyVad~~n~~I~~~~~~~ 922 (1089)
|+ ++.|||+|..+++|++++.++....++......+ ...+..|.|||+|+. ++||++|+.+++|.+++++|
T Consensus 348 d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~-------~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G 420 (628)
T 4a0p_A 348 DPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPS-------QNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDG 420 (628)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSCEEEEC---------------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred ecCCCeEEEEecCcceEEEEEcCCCCceEEEEccccc-------ccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCC
Confidence 97 5789999999999999998876554443210000 114678999999985 57999999999999999998
Q ss_pred CCceEEEEeecccCCCC
Q 001380 923 EEPELQTLELKGVQPPT 939 (1089)
Q Consensus 923 ~~~~~~~l~~~~~~~p~ 939 (1089)
. ...++...++..|.
T Consensus 421 ~--~~~~l~~~~l~~Pr 435 (628)
T 4a0p_A 421 R--SVGVVLKGEQDRPR 435 (628)
T ss_dssp C--EEEEEEECTTCCEE
T ss_pred C--eEEEEEeCCCCcee
Confidence 7 45555444444443
|
| >2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST genomics, PSI-2, protein structure initiative; 1.80A {Chlorobaculum tepidum} SCOP: c.108.1.6 | Back alignment and structure |
|---|
Probab=99.89 E-value=8.5e-23 Score=218.88 Aligned_cols=215 Identities=21% Similarity=0.277 Sum_probs=168.7
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHH-cCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCC----CHHHHHHHHHH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAE-MGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGF----DSEAAKKRFFE 152 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 152 (1089)
++|+|+||+||||+++...+..++.+++++ +|.... +.+....++........+....+.... ........+.+
T Consensus 3 ~~k~iifDlDGTL~d~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (234)
T 2hcf_A 3 SRTLVLFDIDGTLLKVESMNRRVLADALIEVYGTEGS-TGSHDFSGKMDGAIIYEVLSNVGLERAEIADKFDKAKETYIA 81 (234)
T ss_dssp CCEEEEECCBTTTEEECTHHHHHHHHHHHHHHSCCCC-C---CCTTCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEcCCCCcccCccchHHHHHHHHHHHhCCCCc-cchhhhcCCChHHHHHHHHHHcCCCcccchhHHHHHHHHHHH
Confidence 579999999999999999999999999988 788766 556667788777766666655554210 01222233333
Q ss_pred HHHHHhcCCCCCCCCccHHHHHHHHHhC-CCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCcc-CCCCCHHHHHH
Q 001380 153 IYLDKYAKPNSGIGFPGALELINQCKSK-GLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFE-NLKPAPDIFLS 230 (1089)
Q Consensus 153 ~~~~~~~~~~~~~~~pG~~~lL~~Lk~~-Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~-~~KP~~~~~~~ 230 (1089)
.+.+.+. .....++||+.++|+.|+++ |++++|+||.....++..++.+|+. .+|+.++++++.. ..||.+.+|++
T Consensus 82 ~~~~~~~-~~~~~~~~~~~~~l~~l~~~~g~~~~i~t~~~~~~~~~~l~~~~l~-~~f~~~~~~~~~~~~~k~~~~~~~~ 159 (234)
T 2hcf_A 82 LFRERAR-REDITLLEGVRELLDALSSRSDVLLGLLTGNFEASGRHKLKLPGID-HYFPFGAFADDALDRNELPHIALER 159 (234)
T ss_dssp HHHHHCC-GGGEEECTTHHHHHHHHHTCTTEEEEEECSSCHHHHHHHHHTTTCS-TTCSCEECTTTCSSGGGHHHHHHHH
T ss_pred HHHHHhc-cCCCCcCCCHHHHHHHHHhCCCceEEEEcCCcHHHHHHHHHHCCch-hhcCcceecCCCcCccchHHHHHHH
Confidence 3332221 01236799999999999999 9999999999999999999999996 9999888877664 45788999999
Q ss_pred HHHHcC--CCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC-CHHHHhhcCCcEEecCcccCCHHHHHhc
Q 001380 231 ASKILN--VPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL-SEERLKEASPSLIRKEIGSVSLNDILTG 297 (1089)
Q Consensus 231 ~l~~lg--v~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~-~~~~l~~~~~d~vi~dl~el~i~~ll~~ 297 (1089)
+++++| ++|++|++|||+.+|+.+|+++|+.+++|.++. ..+.+...+|++++.++.++ .++|..
T Consensus 160 ~~~~lg~~~~~~~~i~iGD~~~Di~~a~~aG~~~i~v~~~~~~~~~~~~~~a~~v~~~~~el--~~~l~~ 227 (234)
T 2hcf_A 160 ARRMTGANYSPSQIVIIGDTEHDIRCARELDARSIAVATGNFTMEELARHKPGTLFKNFAET--DEVLAS 227 (234)
T ss_dssp HHHHHCCCCCGGGEEEEESSHHHHHHHHTTTCEEEEECCSSSCHHHHHTTCCSEEESCSCCH--HHHHHH
T ss_pred HHHHhCCCCCcccEEEECCCHHHHHHHHHCCCcEEEEcCCCCCHHHHHhCCCCEEeCCHHhH--HHHHHH
Confidence 999999 999999999999999999999999999999987 55666666799999999998 566543
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-21 Score=242.16 Aligned_cols=227 Identities=21% Similarity=0.258 Sum_probs=182.7
Q ss_pred CCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEE----EEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEE
Q 001380 598 SPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFI----VQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYV 673 (1089)
Q Consensus 598 ~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~----~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyV 673 (1089)
..+..|.+|++|+.+++|||+|..+++|++++.+|... ..+... .+..|.|||+|+.++.|||
T Consensus 421 ~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~-------------~l~~P~GLAvD~~~~~LY~ 487 (791)
T 3m0c_C 421 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-------------DIQAPDGLAVDWIHSNIYW 487 (791)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS-------------SCSCCCEEEEETTTTEEEE
T ss_pred cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEec-------------CCCCcceeeeeecCCcEEE
Confidence 45788999999988999999999999999999987421 222211 2568999999998878999
Q ss_pred EECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC-cEEEEEECCCCeEEE
Q 001380 674 ADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ-HQIWEHSTVDGVTRA 752 (1089)
Q Consensus 674 aD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~-~~I~~~~~~~g~~~~ 752 (1089)
+|..+++|+++++++...+++...+ +..|.+||++|.++.|||+|+++ ++|+++++++...+.
T Consensus 488 tD~~~~~I~v~~ldG~~~~~l~~~~----------------l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~ 551 (791)
T 3m0c_C 488 TDSVLGTVSVADTKGVKRKTLFREN----------------GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 551 (791)
T ss_dssp EETTTTEEEEEETTSSSEEEEEECT----------------TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred EecCCCeEEEEeCCCCeEEEEEeCC----------------CCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEE
Confidence 9999999999999988888876322 56899999999988999999987 899999998777766
Q ss_pred EeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccc
Q 001380 753 FSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGS 832 (1089)
Q Consensus 753 ~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~ 832 (1089)
+.. ..+.+|+||++|+.+++|||+|.++++|+++++++...+++..+
T Consensus 552 lv~--------------~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~------------------- 598 (791)
T 3m0c_C 552 LVT--------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED------------------- 598 (791)
T ss_dssp EEC--------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC-------------------
T ss_pred EEe--------------CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecC-------------------
Confidence 652 34678999999987779999999999999999998776665432
Q ss_pred cccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCC-eEEEEeccCCCCCCCCcccccccCCCceEEEcc
Q 001380 833 EVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASN-RVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQ 901 (1089)
Q Consensus 833 ~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~-~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~ 901 (1089)
...+.+|.||+++ .++|||+|+++++|.++|..+| .+.++.. .+..|.+|++..
T Consensus 599 ~~~l~~P~glav~-~~~lYwtD~~~~~I~~~dk~tG~~~~~l~~--------------~l~~P~~i~v~h 653 (791)
T 3m0c_C 599 EKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAE--------------NLLSPEDMVLFH 653 (791)
T ss_dssp TTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEEC--------------SCSCCCCEEEES
T ss_pred CCccCCCCEEEEe-CCEEEEEECCCCEEEEEeCCCCcceEEeec--------------CCCCceeEeeec
Confidence 1237899999996 5699999999999999997555 4555542 467788888764
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.6e-23 Score=206.90 Aligned_cols=143 Identities=22% Similarity=0.411 Sum_probs=130.5
Q ss_pred CCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhh-hhhHHHHHHHcCCCCEEEEEEeCCCCCC--hhc
Q 001380 426 TTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHV-LPDLEFLEKKYKDMPFTVVGVHSAKFDN--EKD 502 (1089)
Q Consensus 426 ~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~-~p~l~~l~~~~~~~~v~vi~v~~~~~~~--~~~ 502 (1089)
.|.++|+|++. .|++|+.+++ ++++||++||+||++||++|+.+ +|.|++++++|+++++.+|+|+++ +.. +++
T Consensus 5 ~g~~~p~~~~~-~~~~g~~~~l-~~~~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~-~~~~~~~~ 81 (160)
T 3lor_A 5 DNAPLLELDVQ-EWVNHEGLSN-EDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSV-FEHHDVMT 81 (160)
T ss_dssp TTCCBCCCCEE-EESSSCCCCH-HHHTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECC-CSCGGGSC
T ss_pred CCCcCCCcccc-cccCCCccCH-HHhCCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEecc-ccccccCC
Confidence 68899999964 3579999999 99999999999999999999996 999999999999889999999875 222 368
Q ss_pred HHHHHHHHHHcCCccceeecCChh------HHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHH
Q 001380 503 LEAIRNAVLRYGISHPVVNDGDMN------LWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLF 571 (1089)
Q Consensus 503 ~~~~~~~~~~~~~~~~v~~d~~~~------l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~ 571 (1089)
.+.+++++++++++||++.|.+.. +++.|+|.++|++||||++|+++.++.|..+.+.+.+.|+.++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~ 156 (160)
T 3lor_A 82 PEALKVFIDEFGIKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADRKGRIRQVQFGQVDDFVLGLLLGSLLSE 156 (160)
T ss_dssp HHHHHHHHHHTTCCSCEEEECCCTTCSSCHHHHHTTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCCcEEECCccccchhhhHHHhcccCccceEEEECCCCcEEEEecCcCCHHHHHHHHHHHHhc
Confidence 999999999999999999999888 999999999999999999999999999999999999999988864
|
| >2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue, haloacid dehalogenase superfamily, isomerase, phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis} PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A* 1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.1e-22 Score=212.36 Aligned_cols=211 Identities=29% Similarity=0.364 Sum_probs=171.7
Q ss_pred ceEEEEecCCcccCCchHHHHHHHHHHHHcCCC-CCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHH---HHHHHHHHHH
Q 001380 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVE-VTVEDFLPFMGTGEANFLGGVASVKGVKGFDSE---AAKKRFFEIY 154 (1089)
Q Consensus 79 ~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 154 (1089)
+|+|+||+||||+++...+..++.++++++|.. .+...+....+.+.......+....+... ... .....+.+.+
T Consensus 2 ~k~i~fDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (221)
T 2wf7_A 2 FKAVLFDLDGVITDTAEYHFRAWKALAEEIGINGVDRQFNEQLKGVSREDSLQKILDLADKKV-SAEEFKELAKRKNDNY 80 (221)
T ss_dssp CCEEEECCBTTTBTHHHHHHHHHHHHHHHTTCCCCSHHHHTTTTTCCHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHH
T ss_pred CcEEEECCCCcccCChHHHHHHHHHHHHHcCCCCCCHHHHHHhCCCCHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHHHH
Confidence 689999999999999998899999999999988 77777777778877776666665554321 222 2333333344
Q ss_pred HHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHH
Q 001380 155 LDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKI 234 (1089)
Q Consensus 155 ~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~ 234 (1089)
...+.......++||+.++|+.|++.|++++++||. ...+..++.+++. .+|+.++++++.+..||++++|+.++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~t~~--~~~~~~l~~~~l~-~~f~~~~~~~~~~~~Kp~~~~~~~~~~~ 157 (221)
T 2wf7_A 81 VKMIQDVSPADVYPGILQLLKDLRSNKIKIALASAS--KNGPFLLERMNLT-GYFDAIADPAEVAASKPAPDIFIAAAHA 157 (221)
T ss_dssp HHHGGGCCGGGBCTTHHHHHHHHHHTTCEEEECCCC--TTHHHHHHHTTCG-GGCSEECCTTTSSSCTTSSHHHHHHHHH
T ss_pred HHHHhhccCCCCCCCHHHHHHHHHHCCCeEEEEcCc--HHHHHHHHHcChH-HHcceEeccccCCCCCCChHHHHHHHHH
Confidence 443332112367899999999999999999999998 5678889999996 9999999999999999999999999999
Q ss_pred cCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhcc
Q 001380 235 LNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTGG 298 (1089)
Q Consensus 235 lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~~ 298 (1089)
+|++|++|++|||+.+|+++|+.+|+.+++++. .++++ .|++++.++.++.+..++...
T Consensus 158 lgi~~~~~i~iGD~~nDi~~a~~aG~~~~~~~~---~~~~~--~a~~v~~~~~el~~~~~~~~~ 216 (221)
T 2wf7_A 158 VGVAPSESIGLEDSQAGIQAIKDSGALPIGVGR---PEDLG--DDIVIVPDTSHYTLEFLKEVW 216 (221)
T ss_dssp TTCCGGGEEEEESSHHHHHHHHHHTCEEEEESC---HHHHC--SSSEEESSGGGCCHHHHHHHH
T ss_pred cCCChhHeEEEeCCHHHHHHHHHCCCEEEEECC---HHHhc--cccchhcCHHhCCHHHHHHHH
Confidence 999999999999999999999999999999953 44554 799999999999888776543
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.4e-23 Score=204.86 Aligned_cols=144 Identities=19% Similarity=0.319 Sum_probs=128.7
Q ss_pred CCCCCCCCccccCC-CCCceeecccccCCCEEEEEEecCCCcchhhh-hhhHHHHHHHcCCCCEEEEEEeCCCCC-Chhc
Q 001380 426 TTPIVPEFPAKLDW-LNTAPLQFRRDLKGKVVVLDFWTYCCINCMHV-LPDLEFLEKKYKDMPFTVVGVHSAKFD-NEKD 502 (1089)
Q Consensus 426 ~g~~~P~f~~~~~~-~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~-~p~l~~l~~~~~~~~v~vi~v~~~~~~-~~~~ 502 (1089)
.|+++|+|++.. | -+|+.+++ ++++||++||+||++||++|+.+ +|.|++++++|++.++.+|+|+++... ..++
T Consensus 2 ~g~~aP~f~l~~-~~~~g~~~~l-~~~~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~ 79 (158)
T 3eyt_A 2 NAMKAPELQIQQ-WFNSATDLTL-ADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMT 79 (158)
T ss_dssp CCEECCCCCEEE-EESCSSCCCT-GGGTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSC
T ss_pred CCCcCCCceehh-hhcCCCccCH-HHhCCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCC
Confidence 588999999652 2 26789999 99999999999999999999997 999999999999889999999875211 1468
Q ss_pred HHHHHHHHHHcCCccceeecCCh-----hHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHH
Q 001380 503 LEAIRNAVLRYGISHPVVNDGDM-----NLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLF 571 (1089)
Q Consensus 503 ~~~~~~~~~~~~~~~~v~~d~~~-----~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~ 571 (1089)
.+.+++|+++++++||++.|.+. .+++.|+|.++|++||||++|++++++.|..+.+.+.+.|+.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~ 153 (158)
T 3eyt_A 80 PISLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLIDKAGDLRAHHFGDVSELLLGAEIATLLGE 153 (158)
T ss_dssp HHHHHHHHHHTTCCSCEEEECCCSSSSCHHHHHTTCCSSSEEEEECTTSEEEEEEESCCCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCCceEEEcCccchhhHHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999887 7999999999999999999999999999999999999999988864
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-21 Score=217.76 Aligned_cols=262 Identities=18% Similarity=0.183 Sum_probs=193.6
Q ss_pred CCCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCC---CCCCC---CCccccCCcceeEEee-CCC
Q 001380 597 TSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEG---LRDGS---FDDATFNRPQGLAYNA-KKN 669 (1089)
Q Consensus 597 ~~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g---~~dG~---~~~~~f~~P~gla~d~-~g~ 669 (1089)
...|..|.++++|+ +|++|+++..+++|.+++.++..+..+....... ..+|. .....+..|.||++++ +|+
T Consensus 15 ~g~~~~p~~i~~d~-~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~ 93 (322)
T 2fp8_A 15 EAPSYAPNSFTFDS-TNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ 93 (322)
T ss_dssp ECSSSCCCCEECCT-TCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE
T ss_pred CCccCCceEEEEcC-CCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc
Confidence 35688999999997 6886667788899999999875555554321100 00111 1123456899999997 565
Q ss_pred EEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEec-CCCEEEEEECCC-----------
Q 001380 670 LLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKP-INEKVYIAMAGQ----------- 737 (1089)
Q Consensus 670 ~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~-~g~~lyvad~~~----------- 737 (1089)
|||+|.. +.|+++|++++.+++++.... ...+..|.+|++++ +| .|||++.++
T Consensus 94 -l~v~d~~-~~i~~~d~~~g~~~~~~~~~~------------~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~ 158 (322)
T 2fp8_A 94 -LYIVDCY-YHLSVVGSEGGHATQLATSVD------------GVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIM 158 (322)
T ss_dssp -EEEEETT-TEEEEECTTCEECEEEESEET------------TEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHH
T ss_pred -EEEEECC-CCEEEEeCCCCEEEEecccCC------------CCcccccceEEEecCCC-EEEEECCcccccccccceeh
Confidence 9999986 559999998888777753210 12356899999999 77 899999763
Q ss_pred ------cEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCC---eE
Q 001380 738 ------HQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGG---SR 808 (1089)
Q Consensus 738 ------~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~---~~ 808 (1089)
+.|+++|+.++.+..+. ..+..|+||+++++|+.|||+|..+++|++++.++.. ..
T Consensus 159 ~~~~~~g~v~~~d~~~~~~~~~~---------------~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~ 223 (322)
T 2fp8_A 159 DTSDKTGRLIKYDPSTKETTLLL---------------KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAE 223 (322)
T ss_dssp HHTCCCEEEEEEETTTTEEEEEE---------------EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEE
T ss_pred cccCCCceEEEEeCCCCEEEEec---------------cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccc
Confidence 68999999888877664 2356799999999998899999999999999987521 11
Q ss_pred EEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCC----------CCEEEEEeCCCCeEEEEeccCC
Q 001380 809 LLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSY----------NHKIKKLDPASNRVSTLAGIGK 878 (1089)
Q Consensus 809 ~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~----------n~~I~~~d~~~~~v~t~~g~g~ 878 (1089)
.+. .+..|.|+++|++|++||++.. +++|.++|+++..+..+....
T Consensus 224 ~~~-----------------------~~~gP~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~- 279 (322)
T 2fp8_A 224 VLV-----------------------KIPNPGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPP- 279 (322)
T ss_dssp EEE-----------------------ECSSEEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCT-
T ss_pred eEE-----------------------eCCCCCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCC-
Confidence 111 0123999999999999999976 678999999877776665321
Q ss_pred CCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 879 AGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 879 ~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
| ..+..|.+++.+ +|+|||++..+++|.++++..+
T Consensus 280 -----g----~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 280 -----P----FAGEHFEQIQEH-DGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp -----T----TTTSCCCEEEEE-TTEEEEECSSCSEEEEEEC---
T ss_pred -----C----CccccceEEEEe-CCEEEEeecCCCceEEEecccc
Confidence 1 136789999885 7899999999999999999765
|
| >2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.70A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-22 Score=216.21 Aligned_cols=212 Identities=18% Similarity=0.194 Sum_probs=161.3
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcC---CCCCHHhHhhhcCCC-------HHHHHHHHHhhc-CCCCCCHHHH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMG---VEVTVEDFLPFMGTG-------EANFLGGVASVK-GVKGFDSEAA 146 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g---~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~ 146 (1089)
|+|+|+||+||||+|+...+..++.+++++++ +....+++...+... .......+.... +.. . ...
T Consensus 1 m~k~iiFDlDGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~-~~~ 77 (241)
T 2hoq_A 1 MVKVIFFDLDDTLVDTSKLAEIARKNAIENMIRHGLPVDFETAYSELIELIKEYGSNFPYHFDYLLRRLDLPY--N-PKW 77 (241)
T ss_dssp CCCEEEECSBTTTBCHHHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHCTTCTTHHHHHHHHTTCCC--C-HHH
T ss_pred CccEEEEcCCCCCCCChhhHHHHHHHHHHHHHHccccccHHHHHHHHHHhhcccchhHHHHHHHHHHHhcCCc--c-chH
Confidence 36899999999999999988888988888863 444444332221100 011122222222 322 1 122
Q ss_pred HHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHH
Q 001380 147 KKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPD 226 (1089)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~ 226 (1089)
...+.+.+.+.+... ..++||+.++|+.|+++|++++|+||.....++..++.+|+. .+|+.++++++++..||+++
T Consensus 78 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~-~~f~~~~~~~~~~~~Kp~~~ 154 (241)
T 2hoq_A 78 ISAGVIAYHNTKFAY--LREVPGARKVLIRLKELGYELGIITDGNPVKQWEKILRLELD-DFFEHVIISDFEGVKKPHPK 154 (241)
T ss_dssp HHHHHHHHHHHHHHH--CCBCTTHHHHHHHHHHHTCEEEEEECSCHHHHHHHHHHTTCG-GGCSEEEEGGGGTCCTTCHH
T ss_pred HHHHHHHHHHHHHhh--CCCCccHHHHHHHHHHCCCEEEEEECCCchhHHHHHHHcCcH-hhccEEEEeCCCCCCCCCHH
Confidence 234444444433222 267999999999999999999999999999999999999996 99999999999999999999
Q ss_pred HHHHHHHHcCCCCCcEEEEcCCh-hhHHHHHHcCCeEEEEcCCC-CHHHH-hhcCCcEEecCcccCCHHHHHhc
Q 001380 227 IFLSASKILNVPTSECIVIEDAL-AGVQAAKAAQMRCIAVTTTL-SEERL-KEASPSLIRKEIGSVSLNDILTG 297 (1089)
Q Consensus 227 ~~~~~l~~lgv~p~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~-~~~~l-~~~~~d~vi~dl~el~i~~ll~~ 297 (1089)
+|.++++++|++|++|+||||+. +|+.+|+++|+.+++|.+|. ..+.+ ....|++++.++.++ .++|..
T Consensus 155 ~~~~~~~~~g~~~~~~i~iGD~~~~Di~~a~~aG~~~~~v~~g~~~~~~~~~~~~~~~~i~~~~el--~~~l~~ 226 (241)
T 2hoq_A 155 IFKKALKAFNVKPEEALMVGDRLYSDIYGAKRVGMKTVWFRYGKHSERELEYRKYADYEIDNLESL--LEVLAR 226 (241)
T ss_dssp HHHHHHHHHTCCGGGEEEEESCTTTTHHHHHHTTCEEEEECCSCCCHHHHTTGGGCSEEESSTTHH--HHHHHH
T ss_pred HHHHHHHHcCCCcccEEEECCCchHhHHHHHHCCCEEEEECCCCCCcccccccCCCCEEECCHHHH--HHHHHH
Confidence 99999999999999999999998 99999999999999998876 44444 245799999999998 556643
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.6e-21 Score=235.92 Aligned_cols=247 Identities=16% Similarity=0.187 Sum_probs=190.4
Q ss_pred CCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCC--
Q 001380 612 NNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVND-- 689 (1089)
Q Consensus 612 ~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g-- 689 (1089)
...|++++. +.|.+++.++.....+... +..|.||++++.++.|||+|..+++|+++++++.
T Consensus 395 ~p~Ll~an~--~~Ir~i~l~~~~~~~l~~~--------------~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~ 458 (791)
T 3m0c_C 395 IAYLFFTNR--HEVRKMTLDRSEYTSLIPN--------------LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG 458 (791)
T ss_dssp CCEEEEECB--SSEEEECTTSCCCEEEECS--------------CSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----
T ss_pred ccccccccc--cceeEeeccCCcceeeecC--------------CCceEEEeecccCCeeEEeeccceeEEEEeccCCCC
Confidence 346777765 6788888886544443322 4588999999977789999999999999998763
Q ss_pred --eEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCC
Q 001380 690 --TVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSS 767 (1089)
Q Consensus 690 --~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~ 767 (1089)
...++... .+..|.|||+++.++.|||+|.++++|+++++.+...+.+..
T Consensus 459 ~~~~~~vi~~----------------~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~------------ 510 (791)
T 3m0c_C 459 VSSYDTVISR----------------DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR------------ 510 (791)
T ss_dssp ---CEEEECS----------------SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE------------
T ss_pred CcceeEEEec----------------CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe------------
Confidence 33344321 256899999999999999999999999999998887766652
Q ss_pred CCccccCCceEEEcCCCCEEEEEeCCC-CeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEcc
Q 001380 768 LNTSFAQPSGISLSPDFMEIYVADSES-SSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAK 846 (1089)
Q Consensus 768 ~~~~~~~P~glav~~~g~~lyvad~~~-~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~ 846 (1089)
..+..|.||||++.+++|||+|.+. ++|.++++++...+++... .|.+|.||++|+
T Consensus 511 --~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~---------------------~l~~P~GLavD~ 567 (791)
T 3m0c_C 511 --ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE---------------------NIQWPNGITLDL 567 (791)
T ss_dssp --CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS---------------------SCSCEEEEEEET
T ss_pred --CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeC---------------------CCCCceEEEEec
Confidence 3456799999999877999999887 8999999997776665431 267899999995
Q ss_pred -CCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCCCc
Q 001380 847 -NGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKEEP 925 (1089)
Q Consensus 847 -~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~~~ 925 (1089)
+|+|||+|+.+++|.+++.++....++...+ ..+..|.||+++ .++|||+|+.+++|.+++..++.
T Consensus 568 ~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~-----------~~l~~P~glav~-~~~lYwtD~~~~~I~~~dk~tG~- 634 (791)
T 3m0c_C 568 LSGRLYWVDSKLHSISSIDVNGGNRKTILEDE-----------KRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS- 634 (791)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEEECT-----------TTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC-
T ss_pred CCCeEEEEeCCCCcEEEEecCCCceEEEecCC-----------CccCCCCEEEEe-CCEEEEEECCCCEEEEEeCCCCc-
Confidence 6799999999999999999988877775321 257889999997 45899999999999999865442
Q ss_pred eEEEEeecccCCCC
Q 001380 926 ELQTLELKGVQPPT 939 (1089)
Q Consensus 926 ~~~~l~~~~~~~p~ 939 (1089)
.+.++. .++..|.
T Consensus 635 ~~~~l~-~~l~~P~ 647 (791)
T 3m0c_C 635 DVNLLA-ENLLSPE 647 (791)
T ss_dssp CCEEEE-CSCSCCC
T ss_pred ceEEee-cCCCCce
Confidence 345553 3444444
|
| >3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-22 Score=216.47 Aligned_cols=203 Identities=20% Similarity=0.266 Sum_probs=161.3
Q ss_pred CCCceEEEEecCCcccCCchHHHHHH-HHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 001380 76 WGKVSAVLFDMDGVLCNSEEPSRRAA-VDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIY 154 (1089)
Q Consensus 76 ~~~~k~ViFD~DGTL~d~~~~~~~a~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (1089)
++++|+|+||+||||+++...+..++ .++++++|... .++....+.........+... ........+.+.+
T Consensus 22 m~~~k~i~fDlDGTL~d~~~~~~~~~~~~~~~~~g~~~--~~~~~~~g~~~~~~~~~~~~~------~~~~~~~~~~~~~ 93 (231)
T 3kzx_A 22 MKQPTAVIFDWYNTLIDTSINIDRTTFYQVLDQMGYKN--IDLDSIPNSTIPKYLITLLGK------RWKEATILYENSL 93 (231)
T ss_dssp CCCCSEEEECTBTTTEETTSSCCHHHHHHHHHHTTCCC--CCCTTSCTTTHHHHHHHHHGG------GHHHHHHHHHHHH
T ss_pred cCCCCEEEECCCCCCcCCchhHHHHHHHHHHHHcCCCH--HHHHHHhCccHHHHHHHHhCc------hHHHHHHHHHHHH
Confidence 45689999999999999998888888 99999998775 344445565555555444321 2233333343333
Q ss_pred HHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHH
Q 001380 155 LDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKI 234 (1089)
Q Consensus 155 ~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~ 234 (1089)
... .......++||+.++|+.|+++|++++|+||.....++..++.+|+. .+|+.++++++....||++++|+.++++
T Consensus 94 ~~~-~~~~~~~~~~~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~-~~f~~i~~~~~~~~~Kp~~~~~~~~~~~ 171 (231)
T 3kzx_A 94 EKS-QKSDNFMLNDGAIELLDTLKENNITMAIVSNKNGERLRSEIHHKNLT-HYFDSIIGSGDTGTIKPSPEPVLAALTN 171 (231)
T ss_dssp HHC-CSCCCCEECTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCG-GGCSEEEEETSSSCCTTSSHHHHHHHHH
T ss_pred hhh-cccccceECcCHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHCCch-hheeeEEcccccCCCCCChHHHHHHHHH
Confidence 311 11223478999999999999999999999999999999999999996 9999999999999999999999999999
Q ss_pred cCCCCC-cEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHh
Q 001380 235 LNVPTS-ECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILT 296 (1089)
Q Consensus 235 lgv~p~-~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~ 296 (1089)
+|++++ ++++|||+.+|+++|+++|+.++++..+.. ..+++++.++.+| .++|.
T Consensus 172 lgi~~~~~~v~vGD~~~Di~~a~~aG~~~v~~~~~~~------~~~~~~~~~~~el--~~~l~ 226 (231)
T 3kzx_A 172 INIEPSKEVFFIGDSISDIQSAIEAGCLPIKYGSTNI------IKDILSFKNFYDI--RNFIC 226 (231)
T ss_dssp HTCCCSTTEEEEESSHHHHHHHHHTTCEEEEECC-----------CCEEESSHHHH--HHHHH
T ss_pred cCCCcccCEEEEcCCHHHHHHHHHCCCeEEEECCCCC------CCCceeeCCHHHH--HHHHH
Confidence 999998 999999999999999999999999966422 4688999999998 55554
|
| >3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3, haloacid dehalogenase-like hydrolase domain containin structural genomics; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-22 Score=221.83 Aligned_cols=213 Identities=21% Similarity=0.275 Sum_probs=167.7
Q ss_pred ceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhc------------------CCCHHHHH----HHHHhhc
Q 001380 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFM------------------GTGEANFL----GGVASVK 136 (1089)
Q Consensus 79 ~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~------------------~~~~~~~~----~~~~~~~ 136 (1089)
+|+|+||+||||+++...+..++.++++++|+..+.+.+...+ +......+ .......
T Consensus 1 ik~iiFDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (263)
T 3k1z_A 1 MRLLTWDVKDTLLRLRHPLGEAYATKARAHGLEVEPSALEQGFRQAYRAQSHSFPNYGLSHGLTSRQWWLDVVLQTFHLA 80 (263)
T ss_dssp CCEEEECCBTTTEEESSCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSTGGGGGGTCCHHHHHHHHHHHHHHHT
T ss_pred CcEEEEcCCCceeCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhccccccccCCCHHHHHHHHHHHHHHHc
Confidence 4799999999999988888899999999999998776654322 33333332 2222223
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcC
Q 001380 137 GVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSAD 216 (1089)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~ 216 (1089)
+. .........+.+.+... .......++||+.++|+.|+++|++++|+||... .++..++.+|+. .+|+.+++++
T Consensus 81 ~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~g~~~~i~tn~~~-~~~~~l~~~gl~-~~f~~~~~~~ 155 (263)
T 3k1z_A 81 GV--QDAQAVAPIAEQLYKDF-SHPCTWQVLDGAEDTLRECRTRGLRLAVISNFDR-RLEGILGGLGLR-EHFDFVLTSE 155 (263)
T ss_dssp TC--CCHHHHHHHHHHHHHHT-TSGGGEEECTTHHHHHHHHHHTTCEEEEEESCCT-THHHHHHHTTCG-GGCSCEEEHH
T ss_pred CC--CCHHHHHHHHHHHHHHh-cCcccceECcCHHHHHHHHHhCCCcEEEEeCCcH-HHHHHHHhCCcH-HhhhEEEeec
Confidence 33 23333333333343333 2222346899999999999999999999999766 478999999996 9999999999
Q ss_pred CccCCCCCHHHHHHHHHHcCCCCCcEEEEcCCh-hhHHHHHHcCCeEEEEcCCC--CHHHHhhcCCcEEecCcccCCHHH
Q 001380 217 AFENLKPAPDIFLSASKILNVPTSECIVIEDAL-AGVQAAKAAQMRCIAVTTTL--SEERLKEASPSLIRKEIGSVSLND 293 (1089)
Q Consensus 217 ~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~--~~~~l~~~~~d~vi~dl~el~i~~ 293 (1089)
+++..||++++|..+++++|++|++|+||||+. +|+.+|+++||.+++++++. ..+.+....|++++.++.+| .+
T Consensus 156 ~~~~~Kp~~~~~~~~~~~~g~~~~~~~~vGD~~~~Di~~a~~aG~~~i~~~~~~~~~~~~~~~~~ad~v~~~l~el--~~ 233 (263)
T 3k1z_A 156 AAGWPKPDPRIFQEALRLAHMEPVVAAHVGDNYLCDYQGPRAVGMHSFLVVGPQALDPVVRDSVPKEHILPSLAHL--LP 233 (263)
T ss_dssp HHSSCTTSHHHHHHHHHHHTCCGGGEEEEESCHHHHTHHHHTTTCEEEEECCSSCCCHHHHHHSCGGGEESSGGGH--HH
T ss_pred ccCCCCCCHHHHHHHHHHcCCCHHHEEEECCCcHHHHHHHHHCCCEEEEEcCCCCCchhhcccCCCceEeCCHHHH--HH
Confidence 999999999999999999999999999999998 99999999999999999986 34456677899999999999 56
Q ss_pred HHhcc
Q 001380 294 ILTGG 298 (1089)
Q Consensus 294 ll~~~ 298 (1089)
+|...
T Consensus 234 ~l~~~ 238 (263)
T 3k1z_A 234 ALDCL 238 (263)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
|
| >4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-23 Score=207.82 Aligned_cols=123 Identities=16% Similarity=0.242 Sum_probs=106.8
Q ss_pred CCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhc
Q 001380 424 RKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKD 502 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~ 502 (1089)
.++|+++|+|+++ +.+|++++| ++++||++||+|| ++||++|+.++|.|++++++|++.++.+|+|+. ++
T Consensus 4 l~vG~~aPdF~l~--~~~G~~~~l-~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~------d~ 74 (157)
T 4g2e_A 4 VEIGELAPDFELP--DTELKKVKL-SALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISV------DP 74 (157)
T ss_dssp CCTTSBCCCCEEE--BTTSCEEEG-GGGTTSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEES------SC
T ss_pred CCCCCCCcCeEeE--CCCCCEEeH-HHHCCCeEEEEecCCCCCCccccchhhcccccccccccCceEeeecc------cc
Confidence 5799999999964 569999999 9999999999999 999999999999999999999999999999985 56
Q ss_pred HHHHHHHHHHcCCccceeecCChhHHHHhCCC-----------ceeEEEEECCCCcEEEEecCC
Q 001380 503 LEAIRNAVLRYGISHPVVNDGDMNLWRELGVN-----------SWPTFAVVGPNGKLLAQLAGE 555 (1089)
Q Consensus 503 ~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~-----------~~Pt~~lid~~G~i~~~~~G~ 555 (1089)
++.+++|+++++++||++.|.+++++++|||. ..|++||||++|+|++++.+.
T Consensus 75 ~~~~~~~~~~~~~~~p~l~D~~~~v~~~ygv~~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~ 138 (157)
T 4g2e_A 75 PFSNKAFKEHNKLNFTILSDYNREVVKKYNVAWEFPALPGYVLAKRAVFVIDKEGKVRYKWVSD 138 (157)
T ss_dssp HHHHHHHHHHTTCCSEEEECTTSHHHHHTTCEEECTTSTTCEEECEEEEEECTTSBEEEEEEES
T ss_pred hhHHHHHHHHcCCcEEEEEcCCcHHHHHcCCccccccCCCcceeeeeEEEECCCCEEEEEEECC
Confidence 78889999999999999999999999999984 478999999999999987653
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=99.88 E-value=5.2e-21 Score=214.99 Aligned_cols=237 Identities=16% Similarity=0.212 Sum_probs=184.3
Q ss_pred CCeEEEEeCCCCEEEEEeCCCCE---EEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCC
Q 001380 612 NNRLFISDSNHNRIVVTDLDGNF---IVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVN 688 (1089)
Q Consensus 612 ~g~L~vsd~~~~~I~~~~~~g~~---~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~ 688 (1089)
...|++++. +.|.++++++.. ...+.. +..|.+|++++.++.|||+|..+++|+++++++
T Consensus 4 ~p~ll~~~~--~~I~~i~l~~~~~~~~~~~~~---------------~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g 66 (318)
T 3sov_A 4 APLLLYANR--RDLRLVDATNGKENATIVVGG---------------LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNK 66 (318)
T ss_dssp CCEEEEECE--EEEEEEETTCTTSCCEEEEEE---------------EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTS
T ss_pred ccEEEEEcc--CeEEEEECCCCceEEEEEecC---------------CCccEEEEEEeCCCEEEEEECCCCcEEEEEccC
Confidence 346788874 789999998752 222221 336789999987777999999999999999987
Q ss_pred CeE-EEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCC
Q 001380 689 DTV-RTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSS 767 (1089)
Q Consensus 689 g~v-~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~ 767 (1089)
+.. .++.. ..+..|.||++++.++.||++|.++++|.++++++...+.+..
T Consensus 67 ~~~~~~~~~----------------~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~------------ 118 (318)
T 3sov_A 67 TESVQNVVV----------------SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW------------ 118 (318)
T ss_dssp SSCCCEEEE----------------ECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC------------
T ss_pred CCceEEEEc----------------CCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEe------------
Confidence 632 22221 1256899999998888999999999999999998766555541
Q ss_pred CCccccCCceEEEcCCCCEEEEEeCC-CCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEcc
Q 001380 768 LNTSFAQPSGISLSPDFMEIYVADSE-SSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAK 846 (1089)
Q Consensus 768 ~~~~~~~P~glav~~~g~~lyvad~~-~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~ 846 (1089)
..+.+|.||++++.++.||++|.+ +++|+++++++...+.+... .+..|.||++|+
T Consensus 119 --~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~---------------------~l~~Pnglavd~ 175 (318)
T 3sov_A 119 --QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS---------------------EIYWPNGLTLDY 175 (318)
T ss_dssp --SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS---------------------SCSCEEEEEEET
T ss_pred --CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC---------------------CCCCccEEEEec
Confidence 346689999999977799999975 78999999987665555321 267899999997
Q ss_pred -CCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCCCc
Q 001380 847 -NGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKEEP 925 (1089)
Q Consensus 847 -~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~~~ 925 (1089)
+++|||+|+.+++|.++|.++....++... .+..|.||+++ .+.||++|+.+++|.++++.++.
T Consensus 176 ~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~-------------~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~- 240 (318)
T 3sov_A 176 EEQKLYWADAKLNFIHKSNLDGTNRQAVVKG-------------SLPHPFALTLF-EDILYWTDWSTHSILACNKYTGE- 240 (318)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEECS-------------CCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCC-
T ss_pred cCCEEEEEECCCCEEEEEcCCCCceEEEecC-------------CCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCC-
Confidence 578999999999999999988777766521 47889999998 46899999999999999995442
Q ss_pred eEEEEe
Q 001380 926 ELQTLE 931 (1089)
Q Consensus 926 ~~~~l~ 931 (1089)
.++++.
T Consensus 241 ~~~~i~ 246 (318)
T 3sov_A 241 GLREIH 246 (318)
T ss_dssp SCEEEE
T ss_pred ceEEEe
Confidence 344554
|
| >3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.2e-22 Score=209.85 Aligned_cols=212 Identities=19% Similarity=0.239 Sum_probs=169.9
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcCCC-CCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVE-VTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLD 156 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1089)
++|+|+||+||||+++...+..++.++++++|.. ...+.+....+.........+.... ...........+.+.+.+
T Consensus 5 ~~k~v~fDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 82 (225)
T 3d6j_A 5 KYTVYLFDFDYTLADSSRGIVTCFRSVLERHGYTGITDDMIKRTIGKTLEESFSILTGIT--DADQLESFRQEYSKEADI 82 (225)
T ss_dssp CCSEEEECCBTTTEECHHHHHHHHHHHHHHTTCCCCCHHHHHTTTTSCHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCcHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHH
Confidence 4799999999999999998999999999999986 5566777777777666655543321 100112223333333433
Q ss_pred HhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcC
Q 001380 157 KYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILN 236 (1089)
Q Consensus 157 ~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lg 236 (1089)
.+... ..++|++.++++.|++.|++++++|+.....++..++.+++. .+|+.++++++....||++.+|..+++++|
T Consensus 83 ~~~~~--~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 159 (225)
T 3d6j_A 83 YMNAN--TILFPDTLPTLTHLKKQGIRIGIISTKYRFRILSFLRNHMPD-DWFDIIIGGEDVTHHKPDPEGLLLAIDRLK 159 (225)
T ss_dssp HTGGG--CEECTTHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHTSSCT-TCCSEEECGGGCSSCTTSTHHHHHHHHHTT
T ss_pred hcccc--CccCcCHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHcCch-hheeeeeehhhcCCCCCChHHHHHHHHHhC
Confidence 33222 367899999999999999999999999999999999999996 899999999988899999999999999999
Q ss_pred CCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC-CHHHHhhcCCcEEecCcccCCHHHHHh
Q 001380 237 VPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL-SEERLKEASPSLIRKEIGSVSLNDILT 296 (1089)
Q Consensus 237 v~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~-~~~~l~~~~~d~vi~dl~el~i~~ll~ 296 (1089)
++++++++|||+.+|+.+|+.+|+.++++.++. ..+++.+..|++++.++.++ .+++.
T Consensus 160 ~~~~~~i~iGD~~nDi~~~~~aG~~~~~~~~~~~~~~~l~~~~ad~v~~~~~el--~~~l~ 218 (225)
T 3d6j_A 160 ACPEEVLYIGDSTVDAGTAAAAGVSFTGVTSGMTTAQEFQAYPYDRIISTLGQL--ISVPE 218 (225)
T ss_dssp CCGGGEEEEESSHHHHHHHHHHTCEEEEETTSSCCTTGGGGSCCSEEESSGGGG--C----
T ss_pred CChHHeEEEcCCHHHHHHHHHCCCeEEEECCCCCChHHHhhcCCCEEECCHHHH--HHhhh
Confidence 999999999999999999999999999999976 55667677799999999998 44443
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-22 Score=198.96 Aligned_cols=138 Identities=17% Similarity=0.259 Sum_probs=125.7
Q ss_pred cCCCCCCCCCCccccCCCCCceeeccc--ccCCCEEEEEEecCCCcc--hhhhhhhHHHHHHHc-CCCCEEEEEEeCCCC
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRR--DLKGKVVVLDFWTYCCIN--CMHVLPDLEFLEKKY-KDMPFTVVGVHSAKF 497 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~--~~~gk~vll~Fwa~wC~~--C~~~~p~l~~l~~~~-~~~~v~vi~v~~~~~ 497 (1089)
...+|+++|+|++. +++|+++++ + +++||++||+||++||++ |+.++|.|++++++| +++++.+|+|++
T Consensus 4 ~l~~G~~~p~f~l~--~~~g~~~~l-~~~~~~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~--- 77 (150)
T 3fw2_A 4 KSEIGKYAPFFSLP--NAKGEKITR-SSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISL--- 77 (150)
T ss_dssp TTSTTSBCCCCCEE--BTTCCEECT-TSTTTTTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEEC---
T ss_pred cccCCCcCCccEeE--CCCCCEEec-chhhhCCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEc---
Confidence 46789999999964 569999999 8 999999999999999999 999999999999999 788899999986
Q ss_pred CChhcHHHHHHHHHHcCCccceeecC---ChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHH
Q 001380 498 DNEKDLEAIRNAVLRYGISHPVVNDG---DMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLF 571 (1089)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~v~~d~---~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~ 571 (1089)
+++.+.+++++++++++|+++.|. +.++++.|+|.++|++||||++|++++++. +.+.+.+.|++++++
T Consensus 78 --d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~~ll~~ 149 (150)
T 3fw2_A 78 --DVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYKIPANILLSSDGKILAKNL---RGEELKKKIENIVEE 149 (150)
T ss_dssp --CSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEESC---CHHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHhCCCceEEEcCcccchHHHHHcCCCccCeEEEECCCCEEEEccC---CHHHHHHHHHHHHhc
Confidence 456789999999999999999998 679999999999999999999999999875 678888888888764
|
| >1swv_A Phosphonoacetaldehyde hydrolase; HAD enzyme superfamily, phosphonotase, metal binding; 2.30A {Bacillus cereus} SCOP: c.108.1.3 PDB: 1sww_A 2iof_A* 2ioh_A 1rql_A 1rqn_A 2iof_K* 1rdf_A 1fez_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.2e-22 Score=218.48 Aligned_cols=215 Identities=19% Similarity=0.254 Sum_probs=170.2
Q ss_pred CCceEEEEecCCcccCCch-HHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHH----------hhcCCCCCCHH-
Q 001380 77 GKVSAVLFDMDGVLCNSEE-PSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVA----------SVKGVKGFDSE- 144 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~-~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~- 144 (1089)
+++|+|+||+||||+++.. .+..++.++++++|+....+.+....+.........+. ...+... ...
T Consensus 4 m~ik~i~fDlDGTLld~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 82 (267)
T 1swv_A 4 MKIEAVIFAWAGTTVDYGCFAPLEVFMEIFHKRGVAITAEEARKPMGLLKIDHVRALTEMPRIASEWNRVFRQLP-TEAD 82 (267)
T ss_dssp -CCCEEEECSBTTTBSTTCCTTHHHHHHHHHTTTCCCCHHHHHTTTTSCHHHHHHHHHHSHHHHHHHHHHHSSCC-CHHH
T ss_pred CCceEEEEecCCCEEeCCCccHHHHHHHHHHHcCCCCCHHHHHHHhccchHHHHHHhcccHHHHHHHHHHhCCCC-CHHH
Confidence 3589999999999999887 67889999999999988877777777776554433321 1122211 222
Q ss_pred --HHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCc-cEEEEcCCccCC
Q 001380 145 --AAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMF-DAIVSADAFENL 221 (1089)
Q Consensus 145 --~~~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~f-d~i~~~~~~~~~ 221 (1089)
.....+.+.+...+... ..++||+.++++.|+++|++++++||.....++..++.+++. .+| +.++++++....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~ 159 (267)
T 1swv_A 83 IQEMYEEFEEILFAILPRY--ASPINGVKEVIASLRERGIKIGSTTGYTREMMDIVAKEAALQ-GYKPDFLVTPDDVPAG 159 (267)
T ss_dssp HHHHHHHHHHHHHHHGGGG--CCBCTTHHHHHHHHHHTTCEEEEBCSSCHHHHHHHHHHHHHT-TCCCSCCBCGGGSSCC
T ss_pred HHHHHHHHHHHHHHhhccc--cccCccHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc-ccChHheecCCccCCC
Confidence 22233333333333222 368999999999999999999999999999999999999886 775 999999989999
Q ss_pred CCCHHHHHHHHHHcCCCC-CcEEEEcCChhhHHHHHHcCCeEEEEcCCCC------------------------HHHHhh
Q 001380 222 KPAPDIFLSASKILNVPT-SECIVIEDALAGVQAAKAAQMRCIAVTTTLS------------------------EERLKE 276 (1089)
Q Consensus 222 KP~~~~~~~~l~~lgv~p-~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~------------------------~~~l~~ 276 (1089)
||++..|..+++++|+++ ++|++|||+.+|+++|+.+|+.+++|.+|.. .+++..
T Consensus 160 kp~~~~~~~~~~~lgi~~~~~~i~iGD~~nDi~~a~~aG~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (267)
T 1swv_A 160 RPYPWMCYKNAMELGVYPMNHMIKVGDTVSDMKEGRNAGMWTVGVILGSSELGLTEEEVENMDSVELREKIEVVRNRFVE 239 (267)
T ss_dssp TTSSHHHHHHHHHHTCCSGGGEEEEESSHHHHHHHHHTTSEEEEECTTCTTTCCCHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCcCEEEEeCCHHHHHHHHHCCCEEEEEcCCCCccCccHHHHhhchhhhhhhhhhhHHHHHHh
Confidence 999999999999999999 9999999999999999999999999999864 455667
Q ss_pred cCCcEEecCcccCCHHHHHhc
Q 001380 277 ASPSLIRKEIGSVSLNDILTG 297 (1089)
Q Consensus 277 ~~~d~vi~dl~el~i~~ll~~ 297 (1089)
.+|++++.++.++ .++|..
T Consensus 240 ~~ad~v~~~~~el--~~~l~~ 258 (267)
T 1swv_A 240 NGAHFTIETMQEL--ESVMEH 258 (267)
T ss_dssp TTCSEEESSGGGH--HHHHHH
T ss_pred cCCceeccCHHHH--HHHHHH
Confidence 7899999999998 566543
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.6e-21 Score=233.10 Aligned_cols=210 Identities=19% Similarity=0.290 Sum_probs=174.2
Q ss_pred CCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC
Q 001380 598 SPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE 677 (1089)
Q Consensus 598 ~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~ 677 (1089)
.++..|.+|++|+.+++|||+|..+++|.+++.+|.....+...+ +..|.|||+|+.++.|||+|..
T Consensus 34 ~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g-------------~~~P~GlAvD~~~~~LY~tD~~ 100 (628)
T 4a0p_A 34 TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFG-------------LDYPEGMAVDWLGKNLYWADTG 100 (628)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-------------CSCCCEEEEETTTTEEEEEETT
T ss_pred CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCC-------------CCCcceEEEEeCCCEEEEEECC
Confidence 467889999999989999999999999999999987555444321 4589999999887789999999
Q ss_pred CCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC-CcEEEEEECCCCeEEEEeCC
Q 001380 678 NHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG-QHQIWEHSTVDGVTRAFSGD 756 (1089)
Q Consensus 678 n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~-~~~I~~~~~~~g~~~~~~g~ 756 (1089)
+++|.+++++++..+++... .+..|.+|+++|..+.||++|++ +++|++++.++...+.+.
T Consensus 101 ~~~I~v~~~dG~~~~~l~~~----------------~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-- 162 (628)
T 4a0p_A 101 TNRIEVSKLDGQHRQVLVWK----------------DLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-- 162 (628)
T ss_dssp TTEEEEEETTSTTCEEEECS----------------SCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE--
T ss_pred CCEEEEEecCCCcEEEEEeC----------------CCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE--
Confidence 99999999988777666521 25689999999988899999987 789999999877666664
Q ss_pred CccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccc
Q 001380 757 GYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLL 836 (1089)
Q Consensus 757 g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l 836 (1089)
..+.+|+||++|+++++|||+|..+++|.+++++++..+++.. .+
T Consensus 163 -------------~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~----------------------~l 207 (628)
T 4a0p_A 163 -------------PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIAD----------------------DL 207 (628)
T ss_dssp -------------CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE----------------------CC
T ss_pred -------------CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeec----------------------cC
Confidence 2356899999999888999999999999999998766554432 26
Q ss_pred cCceEEEEccCCcEEEEeCCCCEEEEEeCCCCe-EEEEe
Q 001380 837 QHPLGVYCAKNGQIYVADSYNHKIKKLDPASNR-VSTLA 874 (1089)
Q Consensus 837 ~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~-v~t~~ 874 (1089)
.+|.||+++. ++|||+|+.+++|.++|..++. .+.+.
T Consensus 208 ~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~ 245 (628)
T 4a0p_A 208 PHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQ 245 (628)
T ss_dssp SCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEe
Confidence 7999999985 7999999999999999976553 34443
|
| >2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural GENO NPPSFA; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.3e-22 Score=212.58 Aligned_cols=210 Identities=18% Similarity=0.136 Sum_probs=163.7
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHh---Hhhh----------cCCCHH---HHHHHHHhhcCCCCC
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVED---FLPF----------MGTGEA---NFLGGVASVKGVKGF 141 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~---~~~~----------~~~~~~---~~~~~~~~~~~~~~~ 141 (1089)
|+|+|+||+||||+++...+..++.++++++|....... +... .+.... .+...+....+..
T Consensus 3 m~k~i~fDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-- 80 (235)
T 2om6_A 3 EVKLVTFDVWNTLLDLNIMLDEFSHQLAKISGLHIKDVANAVIEVRNEIKKMRAQASEDPRKVLTGSQEALAGKLKVD-- 80 (235)
T ss_dssp CCCEEEECCBTTTBCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHHHHHTCC--
T ss_pred CceEEEEeCCCCCCCcchhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHHhCCC--
Confidence 479999999999999998888999999999987744322 2211 133433 3444444444432
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCC---hHhHHHHHHHCCCCCCCccEEEEcCCc
Q 001380 142 DSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSAD---RIKVDANLAAAGLPVSMFDAIVSADAF 218 (1089)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~---~~~~~~~l~~~gl~~~~fd~i~~~~~~ 218 (1089)
. .....+.+.+...+... .++|++.++|+.|+++|++++++||.. ...++..++.+++. .+|+.++++++.
T Consensus 81 -~-~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~~~~l~~~~l~-~~f~~~~~~~~~ 154 (235)
T 2om6_A 81 -V-ELVKRATARAILNVDES---LVLEGTKEALQFVKERGLKTAVIGNVMFWPGSYTRLLLERFGLM-EFIDKTFFADEV 154 (235)
T ss_dssp -H-HHHHHHHHHHHHHCCGG---GBCTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTTCG-GGCSEEEEHHHH
T ss_pred -H-HHHHHHHHHHHHhcccc---CcCccHHHHHHHHHHCCCEEEEEcCCcccchhHHHHHHHhCCcH-HHhhhheecccc
Confidence 1 22223333444433322 469999999999999999999999998 88899999999996 999999999999
Q ss_pred cCCCCCHHHHHHHHHHcCCCCCcEEEEcCCh-hhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhc
Q 001380 219 ENLKPAPDIFLSASKILNVPTSECIVIEDAL-AGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTG 297 (1089)
Q Consensus 219 ~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~ 297 (1089)
...||++++|..+++++|++|++|++|||+. +|+++|+.+|+.++++.++....++. ..+++++.++.++ .++|..
T Consensus 155 ~~~kp~~~~~~~~~~~lgi~~~~~~~iGD~~~nDi~~a~~aG~~~~~~~~~~~~~~~~-~~~~~~~~~~~el--~~~l~~ 231 (235)
T 2om6_A 155 LSYKPRKEMFEKVLNSFEVKPEESLHIGDTYAEDYQGARKVGMWAVWINQEGDKVRKL-EERGFEIPSIANL--KDVIEL 231 (235)
T ss_dssp TCCTTCHHHHHHHHHHTTCCGGGEEEEESCTTTTHHHHHHTTSEEEEECTTCCSCEEE-ETTEEEESSGGGH--HHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCccceEEECCChHHHHHHHHHCCCEEEEECCCCCCcccC-CCCcchHhhHHHH--HHHHHH
Confidence 9999999999999999999999999999999 99999999999999999885433333 3589999999997 566644
Q ss_pred c
Q 001380 298 G 298 (1089)
Q Consensus 298 ~ 298 (1089)
.
T Consensus 232 ~ 232 (235)
T 2om6_A 232 I 232 (235)
T ss_dssp T
T ss_pred H
Confidence 3
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-20 Score=209.01 Aligned_cols=240 Identities=21% Similarity=0.316 Sum_probs=183.7
Q ss_pred CEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCC
Q 001380 623 NRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGS 702 (1089)
Q Consensus 623 ~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~ 702 (1089)
++..+....+.+...+|..|.. +..|..|.+|+++++|+ +||+|..+++|+++++++..+..+...+..
T Consensus 4 ~~~~~~~~~~~~~~~~g~~g~~--------~g~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~-- 72 (286)
T 1q7f_A 4 MKSQIKRQRMIYHCKFGEFGVM--------EGQFTEPSGVAVNAQND-IIVADTNNHRIQIFDKEGRFKFQFGECGKR-- 72 (286)
T ss_dssp ----CCCEEECEEEEECCBSSS--------TTCBSCEEEEEECTTCC-EEEEEGGGTEEEEECTTSCEEEEECCBSSS--
T ss_pred cccccccceeEEEEeccCCCCC--------CCccCCCceEEECCCCC-EEEEECCCCEEEEECCCCcEEEEecccCCC--
Confidence 3444444557778888776432 45688999999999998 999999999999999987777766532211
Q ss_pred CCCCCCcccccccCCceeEEEecCCCEEEEEECC-CcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEc
Q 001380 703 DYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG-QHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLS 781 (1089)
Q Consensus 703 ~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~-~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~ 781 (1089)
...+..|+++++++.++.|||++.+ ++.|++|+..+..+..+.. ..+..|.+|+++
T Consensus 73 ---------~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~--------------~~~~~~~~i~~~ 129 (286)
T 1q7f_A 73 ---------DSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGA--------------TILQHPRGVTVD 129 (286)
T ss_dssp ---------TTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECT--------------TTCSCEEEEEEC
T ss_pred ---------cccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEecC--------------ccCCCceEEEEe
Confidence 1235689999996445599999975 8999999976655555531 234579999999
Q ss_pred CCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEE
Q 001380 782 PDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIK 861 (1089)
Q Consensus 782 ~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~ 861 (1089)
++| ++||++..+++|+++++++.....+... ..+..|.+|+++++|++||++..+++|+
T Consensus 130 ~~g-~l~v~~~~~~~i~~~~~~g~~~~~~~~~--------------------~~~~~p~~i~~~~~g~l~v~~~~~~~i~ 188 (286)
T 1q7f_A 130 NKG-RIIVVECKVMRVIIFDQNGNVLHKFGCS--------------------KHLEFPNGVVVNDKQEIFISDNRAHCVK 188 (286)
T ss_dssp TTS-CEEEEETTTTEEEEECTTSCEEEEEECT--------------------TTCSSEEEEEECSSSEEEEEEGGGTEEE
T ss_pred CCC-CEEEEECCCCEEEEEcCCCCEEEEeCCC--------------------CccCCcEEEEECCCCCEEEEECCCCEEE
Confidence 998 7999999999999999875444333210 1256799999999999999999999999
Q ss_pred EEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCC-EEEEEeCCCCCceEEEEe
Q 001380 862 KLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNN-IIRYLDLNKEEPELQTLE 931 (1089)
Q Consensus 862 ~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~-~I~~~~~~~~~~~~~~l~ 931 (1089)
++|+++..+.++...+ .+..|.+|++|++|+|||++..++ +|.+++.++. .+.++.
T Consensus 189 ~~~~~g~~~~~~~~~g------------~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~--~~~~~~ 245 (286)
T 1q7f_A 189 VFNYEGQYLRQIGGEG------------ITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ--LISALE 245 (286)
T ss_dssp EEETTCCEEEEESCTT------------TSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC--EEEEEE
T ss_pred EEcCCCCEEEEEccCC------------ccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC--EEEEEc
Confidence 9999887777775321 357799999999999999999886 9999998776 556655
|
| >2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-22 Score=217.67 Aligned_cols=212 Identities=19% Similarity=0.305 Sum_probs=155.7
Q ss_pred CCceEEEEecCCcccCCchHHHHHHHHHHHH----cCCCCCHHhH-----hhhcC-------CCHHHHH----H-HHHhh
Q 001380 77 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAE----MGVEVTVEDF-----LPFMG-------TGEANFL----G-GVASV 135 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~----~g~~~~~~~~-----~~~~~-------~~~~~~~----~-~~~~~ 135 (1089)
.++++|+||+||||+|+...+..++.+++++ +|+......+ ....+ .+...+. . .+...
T Consensus 16 ~~~k~viFDlDGTLvds~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (260)
T 2gfh_A 16 SRVRAVFFDLDNTLIDTAGASRRGMLEVIKLLQSKYHYKEEAEIICDKVQVKLSKECFHPYSTCITDVRTSHWEEAIQET 95 (260)
T ss_dssp CCCCEEEECCBTTTBCHHHHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHHHTCCCC----CHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHh
Confidence 4689999999999999999988898888774 4554422111 11111 1222111 1 11111
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEc
Q 001380 136 KGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSA 215 (1089)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~ 215 (1089)
.+.. .......++.+.+....... ..++||+.++|+.|++ +++++|+||.....++..++.+|+. .+|+.++++
T Consensus 96 ~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~L~~L~~-~~~l~i~Tn~~~~~~~~~l~~~gl~-~~f~~i~~~ 169 (260)
T 2gfh_A 96 KGGA--DNRKLAEECYFLWKSTRLQH--MILADDVKAMLTELRK-EVRLLLLTNGDRQTQREKIEACACQ-SYFDAIVIG 169 (260)
T ss_dssp HCSS--CCHHHHHHHHHHHHHHHHHT--CCCCHHHHHHHHHHHT-TSEEEEEECSCHHHHHHHHHHHTCG-GGCSEEEEG
T ss_pred cCcc--chHHHHHHHHHHHHHHHHhc--CCCCcCHHHHHHHHHc-CCcEEEEECcChHHHHHHHHhcCHH-hhhheEEec
Confidence 1111 12233333434333322222 3789999999999998 4999999999999999999999996 999999999
Q ss_pred CCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCC-hhhHHHHHHcCC-eEEEEcCCCCHHHHhhcCCcEEecCcccCCHHH
Q 001380 216 DAFENLKPAPDIFLSASKILNVPTSECIVIEDA-LAGVQAAKAAQM-RCIAVTTTLSEERLKEASPSLIRKEIGSVSLND 293 (1089)
Q Consensus 216 ~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~-~~Di~aA~~aG~-~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ 293 (1089)
+++...||+|++|..+++++|++|++|+||||+ .+|+++|+++|| .+++|.++..........|++++.++.++ .+
T Consensus 170 ~~~~~~KP~p~~~~~~~~~~~~~~~~~~~vGDs~~~Di~~A~~aG~~~~i~v~~~~~~~~~~~~~~~~~i~~~~el--~~ 247 (260)
T 2gfh_A 170 GEQKEEKPAPSIFYHCCDLLGVQPGDCVMVGDTLETDIQGGLNAGLKATVWINKSGRVPLTSSPMPHYMVSSVLEL--PA 247 (260)
T ss_dssp GGSSSCTTCHHHHHHHHHHHTCCGGGEEEEESCTTTHHHHHHHTTCSEEEEECTTCCCCSSCCCCCSEEESSGGGH--HH
T ss_pred CCCCCCCCCHHHHHHHHHHcCCChhhEEEECCCchhhHHHHHHCCCceEEEEcCCCCCcCcccCCCCEEECCHHHH--HH
Confidence 999999999999999999999999999999996 799999999999 89999876433333456799999999998 55
Q ss_pred HHh
Q 001380 294 ILT 296 (1089)
Q Consensus 294 ll~ 296 (1089)
++.
T Consensus 248 ~l~ 250 (260)
T 2gfh_A 248 LLQ 250 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-22 Score=198.41 Aligned_cols=133 Identities=13% Similarity=0.197 Sum_probs=113.6
Q ss_pred ccCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChh
Q 001380 422 ENRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEK 501 (1089)
Q Consensus 422 ~~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~ 501 (1089)
+...+|+++|+|++ +.+|+.+++ ++++||++||+||++||++|+.++|.|++++++|+++++.+|+|++ +.
T Consensus 5 ~~l~~G~~~P~f~l---~~~g~~~~l-~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~-----d~ 75 (143)
T 4fo5_A 5 EGVNPGDLAPRIEF---LGNDAKASF-HNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISM-----DE 75 (143)
T ss_dssp BSSSTTSBCCCCCC--------CCCS-CCSSCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEEC-----CS
T ss_pred cccCCcccCCceEE---cCCCCEEEH-HHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEc-----cC
Confidence 35679999999996 459999999 8999999999999999999999999999999999988999999986 45
Q ss_pred cHHHHHHHHHHcCCcc-ceeecCC---hhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHH
Q 001380 502 DLEAIRNAVLRYGISH-PVVNDGD---MNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVE 566 (1089)
Q Consensus 502 ~~~~~~~~~~~~~~~~-~v~~d~~---~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~ 566 (1089)
+.+.+++++++++++| +++.|.. .++++.|+|.++|++||||++|+|+++..+ .+++++.|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~---~~~l~~~l~ 141 (143)
T 4fo5_A 76 KESIFTETVKIDKLDLSTQFHEGLGKESELYKKYDLRKGFKNFLINDEGVIIAANVT---PEKLTEILK 141 (143)
T ss_dssp CHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHTTGGGCCCEEEECTTSBEEEESCC---HHHHHHHHT
T ss_pred CHHHHHHHHHHhCCCCceeeecccccchHHHHHcCCCCCCcEEEECCCCEEEEccCC---HHHHHHHHH
Confidence 6889999999999999 7888873 579999999999999999999999998653 455655553
|
| >2fdr_A Conserved hypothetical protein; SAD, structural genomics, agrobacter tumefaciens, HAD-superfamily hydrolase; 2.00A {Agrobacterium tumefaciens str} SCOP: c.108.1.6 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=209.21 Aligned_cols=209 Identities=23% Similarity=0.325 Sum_probs=171.2
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCC-HHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVT-VEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLD 156 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1089)
++|+|+||+||||+++...+..++.++++++|.... .+.+..+.+.....+...+....+.... ......+.+.+.+
T Consensus 3 ~ik~i~fDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 80 (229)
T 2fdr_A 3 GFDLIIFDCDGVLVDSEIIAAQVESRLLTEAGYPISVEEMGERFAGMTWKNILLQVESEASIPLS--ASLLDKSEKLLDM 80 (229)
T ss_dssp CCSEEEECSBTTTBCCHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCCHHHHHHHHHHHHCCCCC--THHHHHHHHHHHH
T ss_pred CccEEEEcCCCCcCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHH
Confidence 479999999999999999888999999999999877 4556667788877777777666654321 2233334444433
Q ss_pred HhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCc-cEEEEcCCccCC--CCCHHHHHHHHH
Q 001380 157 KYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMF-DAIVSADAFENL--KPAPDIFLSASK 233 (1089)
Q Consensus 157 ~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~f-d~i~~~~~~~~~--KP~~~~~~~~l~ 233 (1089)
.+... ..++||+.++++.|+. +++|+||.....++..++++++. .+| +.++++++...+ ||++..|+++++
T Consensus 81 ~~~~~--~~~~~~~~~~l~~l~~---~~~i~s~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~~~~~kpk~~~~~~~~~ 154 (229)
T 2fdr_A 81 RLERD--VKIIDGVKFALSRLTT---PRCICSNSSSHRLDMMLTKVGLK-PYFAPHIYSAKDLGADRVKPKPDIFLHGAA 154 (229)
T ss_dssp HHHHH--CCBCTTHHHHHHHCCS---CEEEEESSCHHHHHHHHHHTTCG-GGTTTCEEEHHHHCTTCCTTSSHHHHHHHH
T ss_pred HhhcC--CccCcCHHHHHHHhCC---CEEEEECCChhHHHHHHHhCChH-HhccceEEeccccccCCCCcCHHHHHHHHH
Confidence 33222 2678999999998875 89999999999999999999996 999 999999988889 999999999999
Q ss_pred HcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCC-----HHHHhhcCCcEEecCcccCCHHHHHh
Q 001380 234 ILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLS-----EERLKEASPSLIRKEIGSVSLNDILT 296 (1089)
Q Consensus 234 ~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~-----~~~l~~~~~d~vi~dl~el~i~~ll~ 296 (1089)
++|++++++++|||+.+|+.+|+.+|+.++++.++.. .+++++.+|++++.++.++ .++|.
T Consensus 155 ~l~~~~~~~i~iGD~~~Di~~a~~aG~~~i~~~~~~~~~~~~~~~l~~~~ad~v~~~~~el--~~~l~ 220 (229)
T 2fdr_A 155 QFGVSPDRVVVVEDSVHGIHGARAAGMRVIGFTGASHTYPSHADRLTDAGAETVISRMQDL--PAVIA 220 (229)
T ss_dssp HHTCCGGGEEEEESSHHHHHHHHHTTCEEEEECCSTTCCTTHHHHHHHHTCSEEESCGGGH--HHHHH
T ss_pred HcCCChhHeEEEcCCHHHHHHHHHCCCEEEEEecCCccchhhhHHHhhcCCceeecCHHHH--HHHHH
Confidence 9999999999999999999999999999999998754 2457777799999999987 55554
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.5e-22 Score=197.12 Aligned_cols=145 Identities=25% Similarity=0.423 Sum_probs=133.2
Q ss_pred CCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHH
Q 001380 425 KTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLE 504 (1089)
Q Consensus 425 ~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~ 504 (1089)
.+|+++|+|++.+.+++|+.+++ ++++||++||+||++||++|+.++|.|++++++|+++ +.+++|+++......+.+
T Consensus 2 ~~g~~~P~f~~~~~~~~g~~~~~-~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~v~~~~~~~~~~~~ 79 (148)
T 2b5x_A 2 KLRQPMPELTGEKAWLNGEVTRE-QLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ-LNVVAVHMPRSEDDLDPG 79 (148)
T ss_dssp CTTCBCCCCCCCSEEESCCCCHH-HHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-SEEEEEECCCSTTTSSHH
T ss_pred CCCCCCCCCccccccccCcccch-hhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCC-cEEEEEEcCCCccccCHH
Confidence 57999999997656789999999 8899999999999999999999999999999999877 999999886555555899
Q ss_pred HHHHHHHHcCCccceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHH
Q 001380 505 AIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLF 571 (1089)
Q Consensus 505 ~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~ 571 (1089)
.+++++++++++|+++.|.+.++++.|+|.++|+++++|++|+++.++.|..+.+.+.+.|+++++.
T Consensus 80 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~ 146 (148)
T 2b5x_A 80 KIKETAAEHDITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVLAE 146 (148)
T ss_dssp HHHHHHHHTTCCSCEEECSSCHHHHHTCCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCcceEECCchhHHHHhCCCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999988889999999888763
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-22 Score=198.18 Aligned_cols=133 Identities=11% Similarity=0.144 Sum_probs=119.3
Q ss_pred CCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHH---HHHHcCCCCEEEEEEeCCCCCChh
Q 001380 425 KTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEF---LEKKYKDMPFTVVGVHSAKFDNEK 501 (1089)
Q Consensus 425 ~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~---l~~~~~~~~v~vi~v~~~~~~~~~ 501 (1089)
++|+++|+|++. +++|+.+++ ++++||++||+||++||++|+.++|.|.+ ++++|++.++.+|+|++ ++
T Consensus 2 ~~G~~~p~f~l~--~~~g~~~~l-~~~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~-----d~ 73 (142)
T 3ewl_A 2 NAGMKAADFTYV--TVHGDNSRM-SRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYP-----DE 73 (142)
T ss_dssp CTTSBCCCCEEE--CTTCCEEEG-GGCCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEEC-----SS
T ss_pred CCCCcCCCCEEE--CCCCCEEEh-hhcCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEe-----cC
Confidence 589999999964 569999999 89999999999999999999999999998 99999888899999976 46
Q ss_pred cHHHHHHHHHHcCCccceeecCChhHHH--HhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 502 DLEAIRNAVLRYGISHPVVNDGDMNLWR--ELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 502 ~~~~~~~~~~~~~~~~~v~~d~~~~l~~--~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
+.+.+++++++++++|+++.|.+..+.. .|+|.++|+++|||++|++++. ..+.++++++|++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~---~~~~~~l~~~l~~~ 139 (142)
T 3ewl_A 74 NREEWATKAVYMPQGWIVGWNKAGDIRTRQLYDIRATPTIYLLDGRKRVILK---DTSMEQLIDYLATQ 139 (142)
T ss_dssp CHHHHHHHHTTSCTTCEEEECTTCHHHHTTCSCCCSSSEEEEECTTCBEEEC---SCCHHHHHHHHHC-
T ss_pred CHHHHHHHHHHcCCCcceeeCCccchhhHHHcCCCCCCeEEEECCCCCEEec---CCCHHHHHHHHHHH
Confidence 7889999999999999999999999977 9999999999999999999873 45677777777654
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-22 Score=197.73 Aligned_cols=133 Identities=10% Similarity=0.132 Sum_probs=118.8
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHH---HHHHcCCCCEEEEEEeCCCCCC
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEF---LEKKYKDMPFTVVGVHSAKFDN 499 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~---l~~~~~~~~v~vi~v~~~~~~~ 499 (1089)
...+|+++|+|++. +.+|+.+++ ++++||++||+||++||++|+.++|.|++ ++++|++.++.+|+|+.
T Consensus 4 ~~~~G~~ap~f~l~--~~~g~~~~l-~~~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~----- 75 (142)
T 3eur_A 4 KNRLGTKALNFTYT--LDSGVKGTL-YQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYP----- 75 (142)
T ss_dssp TTCTTSBCCCCEEE--ETTSCEEET-TTCCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEEC-----
T ss_pred hhcCCCccCCcEEE--cCCCCEeeH-HHcCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEc-----
Confidence 45789999999965 459999999 99999999999999999999999999999 99999888999999976
Q ss_pred hhcHHHHHHHHHHcCCccceeecCChh--HHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHH
Q 001380 500 EKDLEAIRNAVLRYGISHPVVNDGDMN--LWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVE 566 (1089)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~v~~d~~~~--l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~ 566 (1089)
+++.+.+++++++++++|+.+.|.+.. +++.|+|.++|++||||++|+|+++..+ .++++++|+
T Consensus 76 d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~---~~~l~~~l~ 141 (142)
T 3eur_A 76 DEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLYDLRAIPTLYLLDKNKTVLLKDAT---LQKVEQYLA 141 (142)
T ss_dssp SSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCSCCTTCSEEEEECTTCBEEEEEEC---HHHHHHHHH
T ss_pred CCCHHHHHHHHHhcccccccccCccchhhhhhhcCCCcCCeEEEECCCCcEEecCCC---HHHHHHHHh
Confidence 567789999999999999999998765 7899999999999999999999998764 466666654
|
| >2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.10A {Streptococcus pneumoniae} SCOP: c.108.1.6 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=205.18 Aligned_cols=201 Identities=17% Similarity=0.222 Sum_probs=165.2
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcC-CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMG-TGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLD 156 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1089)
++|+|+||+||||+++...+..++.++++++|+......+....+ .+...+...+...... . ......+.+.+.+
T Consensus 3 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~ 78 (207)
T 2go7_A 3 QKTAFIWDLDGTLLDSYEAILSGIEETFAQFSIPYDKEKVREFIFKYSVQDLLVRVAEDRNL---D-VEVLNQVRAQSLA 78 (207)
T ss_dssp -CCEEEECTBTTTEECHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHSCHHHHHHHHHHHHTC---C-HHHHHHHHHHHHT
T ss_pred cccEEEEeCCCcccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHccccHHHHHHHhhchhhc---c-HHHHHHHHHHHHH
Confidence 579999999999999999898999999999999888777777777 6666666555422222 1 2333344444333
Q ss_pred HhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcC
Q 001380 157 KYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILN 236 (1089)
Q Consensus 157 ~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lg 236 (1089)
.+.. ...++|++.++|+.|+++|++++++||......+ .++.+++. .+|+.++++++....||++.+|..+++++|
T Consensus 79 ~~~~--~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~-~~~~~~~~-~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~ 154 (207)
T 2go7_A 79 EKNA--QVVLMPGAREVLAWADESGIQQFIYTHKGNNAFT-ILKDLGVE-SYFTEILTSQSGFVRKPSPEAATYLLDKYQ 154 (207)
T ss_dssp TCGG--GCEECTTHHHHHHHHHHTTCEEEEECSSCTHHHH-HHHHHTCG-GGEEEEECGGGCCCCTTSSHHHHHHHHHHT
T ss_pred hccc--cceeCcCHHHHHHHHHHCCCeEEEEeCCchHHHH-HHHHcCch-hheeeEEecCcCCCCCCCcHHHHHHHHHhC
Confidence 2222 2367999999999999999999999999988888 99999996 899999999999999999999999999999
Q ss_pred CCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHH
Q 001380 237 VPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDIL 295 (1089)
Q Consensus 237 v~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll 295 (1089)
++++++++|||+.+|+.+|+.+|+.++++.++. . .|++++.++.++ .++|
T Consensus 155 i~~~~~~~iGD~~nDi~~~~~aG~~~i~~~~~~-~------~a~~v~~~~~el--~~~l 204 (207)
T 2go7_A 155 LNSDNTYYIGDRTLDVEFAQNSGIQSINFLEST-Y------EGNHRIQALADI--SRIF 204 (207)
T ss_dssp CCGGGEEEEESSHHHHHHHHHHTCEEEESSCCS-C------TTEEECSSTTHH--HHHT
T ss_pred CCcccEEEECCCHHHHHHHHHCCCeEEEEecCC-C------CCCEEeCCHHHH--HHHH
Confidence 999999999999999999999999999998875 2 689999999887 4444
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.5e-22 Score=199.03 Aligned_cols=140 Identities=26% Similarity=0.406 Sum_probs=127.5
Q ss_pred CCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHH
Q 001380 426 TTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEA 505 (1089)
Q Consensus 426 ~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~ 505 (1089)
+|+++|+|++ .+.+|+.+++ ++++||++||+||++||++|+.++|.|++++++|++.++.+++|++ +++.+.
T Consensus 2 ~G~~~p~~~l--~~~~g~~~~l-~~~~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~-----d~~~~~ 73 (151)
T 2f9s_A 2 EGSDAPNFVL--EDTNGKRIEL-SDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNV-----GESKIA 73 (151)
T ss_dssp CCEECCCCEE--ECTTCCEEEG-GGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEE-----SCCHHH
T ss_pred CCCcCCccee--EcCCCCEEEH-HHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEC-----CCCHHH
Confidence 6889999995 4569999999 8999999999999999999999999999999999887899999976 346688
Q ss_pred HHHHHHHcCCccceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHHhc
Q 001380 506 IRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFYG 573 (1089)
Q Consensus 506 ~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~~~ 573 (1089)
+++++++++++|+++.|.+..+++.|+|.++|++++||++|+++.++.|..+.+.+.+.|+.+++...
T Consensus 74 ~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~G~~~~~~l~~~l~~ll~~~~ 141 (151)
T 2f9s_A 74 VHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYMNLIKPGET 141 (151)
T ss_dssp HHHHHHHHTCCSCEEEETTSHHHHHTTCCSSCEEEEECTTSEEEEEEESCCCHHHHHHHHHHHSCC--
T ss_pred HHHHHHHcCCCceEEECCchHHHHhcCCCCCCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999899999999888776544
|
| >4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-22 Score=205.08 Aligned_cols=138 Identities=11% Similarity=0.149 Sum_probs=118.6
Q ss_pred CCCCCCCCCCccccCCCCCceeeccccc--CCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCCh
Q 001380 424 RKTTPIVPEFPAKLDWLNTAPLQFRRDL--KGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNE 500 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~~~~l~~~~--~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~ 500 (1089)
.++|+++|+|++. +.+|++++| +++ +||++||+|| ++||++|+.++|.|++++++|++.++.+|+||.
T Consensus 5 l~vG~~aPdF~l~--~~~G~~v~L-sd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~is~------ 75 (164)
T 4gqc_A 5 VELGEKAPDFTLP--NQDFEPVNL-YEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISV------ 75 (164)
T ss_dssp CCTTSBCCCCEEE--BTTSCEEEH-HHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEEEES------
T ss_pred ccCCCCCcCcEeE--CCCCCEEEH-HHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEEecC------
Confidence 5789999999964 569999999 887 8999999998 999999999999999999999999999999985
Q ss_pred hcHHHHHHHHHHcCCccceeecCChhHHHHhCCC----------ceeEEEEECCCCcEEEEecCCC-----chhhHHHHH
Q 001380 501 KDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVN----------SWPTFAVVGPNGKLLAQLAGEG-----HRKDLDDLV 565 (1089)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~----------~~Pt~~lid~~G~i~~~~~G~~-----~~~~l~~~l 565 (1089)
++++.+++|+++++++||++.|++++++++|||. ..|++||||++|+|++.+.+.. +.+++.+.+
T Consensus 76 d~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l 155 (164)
T 4gqc_A 76 DSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREA 155 (164)
T ss_dssp SCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSCTTCCCCHHHHHHHH
T ss_pred CCHHHHHHHHHhcCcccceeecCchHHHHHcCCcccccccCcCCeeeEEEEECCCCEEEEEEEeCCCCCCCCHHHHHHHH
Confidence 5778899999999999999999999999999984 4689999999999999876532 334444444
Q ss_pred HHHHH
Q 001380 566 EAALL 570 (1089)
Q Consensus 566 ~~~l~ 570 (1089)
++++.
T Consensus 156 ~~l~~ 160 (164)
T 4gqc_A 156 NKIAG 160 (164)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 44444
|
| >3umc_A Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.6e-22 Score=214.41 Aligned_cols=213 Identities=18% Similarity=0.264 Sum_probs=159.3
Q ss_pred CCCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhh-hcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 001380 76 WGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLP-FMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIY 154 (1089)
Q Consensus 76 ~~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (1089)
.|++|+|+||+||||+++...+..++.++++++|+.....++.. +.+.....+ ..+... ............+....+
T Consensus 19 ~m~ik~i~fDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~ 96 (254)
T 3umc_A 19 FQGMRAILFDVFGTLVDWRSSLIEQFQALERELGGTLPCVELTDRWRQQYKPAM-DRVRNG-QAPWQHLDQLHRQSLEAL 96 (254)
T ss_dssp SSSCCEEEECCBTTTEEHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHTHHHH-HHHHTT-SSCCCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEeCCCccEecCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHhcc-cCCcccHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999876654422 222111111 111110 111112222222222222
Q ss_pred HHHhcC-------------CCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCC
Q 001380 155 LDKYAK-------------PNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENL 221 (1089)
Q Consensus 155 ~~~~~~-------------~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~ 221 (1089)
.+.+.. .....++||+.++|+.|++. ++++|+||.....++..++.+|+. |+.++++++....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~i~s~~~~~~~~~~l~~~g~~---f~~~~~~~~~~~~ 172 (254)
T 3umc_A 97 AGEFGLALDEALLQRITGFWHRLRPWPDTLAGMHALKAD-YWLAALSNGNTALMLDVARHAGLP---WDMLLCADLFGHY 172 (254)
T ss_dssp HHHTTCCCCHHHHHHHHGGGGSCEECTTHHHHHHHHTTT-SEEEECCSSCHHHHHHHHHHHTCC---CSEECCHHHHTCC
T ss_pred HHHhCCCCCHHHHHHHHHHHhcCCCCccHHHHHHHHHhc-CeEEEEeCCCHHHHHHHHHHcCCC---cceEEeecccccC
Confidence 111111 01236799999999999996 999999999999999999999984 9999999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEc----CCC-CHHHH-hhcCCcEEecCcccCCHHHHH
Q 001380 222 KPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVT----TTL-SEERL-KEASPSLIRKEIGSVSLNDIL 295 (1089)
Q Consensus 222 KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~----~g~-~~~~l-~~~~~d~vi~dl~el~i~~ll 295 (1089)
||++.+|+.+++++|++|++|++|||+.+|+++|+++|+.+++++ +|. ..+++ ....||++++++.+| .++|
T Consensus 173 kp~~~~~~~~~~~lgi~~~~~~~iGD~~~Di~~a~~aG~~~~~~~~~~~~g~~~~~~l~~~~~ad~v~~~l~el--~~~l 250 (254)
T 3umc_A 173 KPDPQVYLGACRLLDLPPQEVMLCAAHNYDLKAARALGLKTAFIARPLEYGPGQSQDLAAEQDWDLIASDLLDL--HRQL 250 (254)
T ss_dssp TTSHHHHHHHHHHHTCCGGGEEEEESCHHHHHHHHHTTCEEEEECCTTTTCTTCCSSSSCSSCCSEEESSHHHH--HHHH
T ss_pred CCCHHHHHHHHHHcCCChHHEEEEcCchHhHHHHHHCCCeEEEEecCCccCCCCCcccccCCCCcEEECCHHHH--HHHh
Confidence 999999999999999999999999999999999999999999999 555 44454 356899999999998 6665
Q ss_pred h
Q 001380 296 T 296 (1089)
Q Consensus 296 ~ 296 (1089)
.
T Consensus 251 ~ 251 (254)
T 3umc_A 251 A 251 (254)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >3umg_A Haloacid dehalogenase; defluorinase, hydrolase; 2.25A {Rhodococcus jostii} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=211.51 Aligned_cols=214 Identities=17% Similarity=0.209 Sum_probs=160.1
Q ss_pred CCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 001380 77 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLD 156 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1089)
+++|+|+||+||||+++...+..++.++++++|+.....++...+..........+..... ...............+.+
T Consensus 13 ~~~k~i~fDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 91 (254)
T 3umg_A 13 RNVRAVLFDTFGTVVDWRTGIATAVADYAARHQLEVDAVAFADRWRARYQPSMDAILSGAR-EFVTLDILHRENLDFVLR 91 (254)
T ss_dssp SBCCEEEECCBTTTBCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTHHHHHHHHHTTSS-CCCCHHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCCceecCchHHHHHHHHHHHHhcCCCCHHHHHHHHHHhHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999877655433221121111111111100 011111222222222211
Q ss_pred HhcC----------------CCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccC
Q 001380 157 KYAK----------------PNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFEN 220 (1089)
Q Consensus 157 ~~~~----------------~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~ 220 (1089)
.+.. .....++||+.++|+.|+++ ++++|+||.....++..++.+|+. |+.++++++...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~i~t~~~~~~~~~~l~~~~~~---f~~~~~~~~~~~ 167 (254)
T 3umg_A 92 ESGIDPTNHDSGELDELARAWHVLTPWPDSVPGLTAIKAE-YIIGPLSNGNTSLLLDMAKNAGIP---WDVIIGSDINRK 167 (254)
T ss_dssp HTTCCGGGSCHHHHHHHHGGGGSCCBCTTHHHHHHHHHHH-SEEEECSSSCHHHHHHHHHHHTCC---CSCCCCHHHHTC
T ss_pred HhCCCcCcCCHHHHHHHHHHHhhCcCCcCHHHHHHHHHhC-CeEEEEeCCCHHHHHHHHHhCCCC---eeEEEEcCcCCC
Confidence 1111 01336899999999999997 999999999999999999999985 899999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEc----CCC-CHHHH-hhcCCcEEecCcccCCHHHH
Q 001380 221 LKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVT----TTL-SEERL-KEASPSLIRKEIGSVSLNDI 294 (1089)
Q Consensus 221 ~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~----~g~-~~~~l-~~~~~d~vi~dl~el~i~~l 294 (1089)
.||++.+|+.+++++|+++++|++|||+.+|+++|+++|+.+++++ +|. ..+++ ....||+++.++.+| ..+
T Consensus 168 ~kp~~~~~~~~~~~lgi~~~~~~~iGD~~~Di~~a~~aG~~~~~~~~~~~~g~~~~~~~~~~~~~d~~~~~~~el--~~~ 245 (254)
T 3umg_A 168 YKPDPQAYLRTAQVLGLHPGEVMLAAAHNGDLEAAHATGLATAFILRPVEHGPHQTDDLAPTGSWDISATDITDL--AAQ 245 (254)
T ss_dssp CTTSHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHTTCEEEEECCTTTTCTTCCSCSSCSSCCSEEESSHHHH--HHH
T ss_pred CCCCHHHHHHHHHHcCCChHHEEEEeCChHhHHHHHHCCCEEEEEecCCcCCCCccccccccCCCceEECCHHHH--HHH
Confidence 9999999999999999999999999999999999999999999999 555 34444 457899999999998 666
Q ss_pred Hhc
Q 001380 295 LTG 297 (1089)
Q Consensus 295 l~~ 297 (1089)
|..
T Consensus 246 l~~ 248 (254)
T 3umg_A 246 LRA 248 (254)
T ss_dssp HHH
T ss_pred hcC
Confidence 654
|
| >3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.87 E-value=7.2e-22 Score=199.17 Aligned_cols=133 Identities=18% Similarity=0.196 Sum_probs=119.0
Q ss_pred CCCCCCCCCCccccCCCCCceeecccccCCCE-EEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChh
Q 001380 424 RKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKV-VVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEK 501 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~-vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~ 501 (1089)
..+|+++|+|++. +.+|+++++ ++++||+ +||+|| ++||++|+.++|.|++++++|+++++.+|+|++ +
T Consensus 2 l~~G~~~P~f~l~--~~~G~~~~l-~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~------d 72 (161)
T 3drn_A 2 VKVGDKAPLFEGI--ADNGEKISL-SDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSS------D 72 (161)
T ss_dssp CCTTSBCCCCEEE--ETTSCEEEG-GGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEES------C
T ss_pred CCCCCcCCCeEee--cCCCCEEEH-HHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeC------C
Confidence 4689999999965 569999999 9999997 999999 999999999999999999999988999999986 4
Q ss_pred cHHHHHHHHHHcCCccceeecCChhHHHHhCCCc----eeEEEEECCCCcEEEEecCCC-chhhHHHHH
Q 001380 502 DLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNS----WPTFAVVGPNGKLLAQLAGEG-HRKDLDDLV 565 (1089)
Q Consensus 502 ~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~----~Pt~~lid~~G~i~~~~~G~~-~~~~l~~~l 565 (1089)
+.+.+++|+++++++|+++.|.+.++++.|++.+ +|++||||++|+|++.+.|.. ..+.+++++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~il 141 (161)
T 3drn_A 73 DINSHKRFKEKYKLPFILVSDPDKKIRELYGAKGFILPARITFVIDKKGIIRHIYNSQMNPANHVNEAL 141 (161)
T ss_dssp CHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCCCSSSCCCEEEEECTTSBEEEEEECSSCTTHHHHHHH
T ss_pred CHHHHHHHHHHhCCCceEEECCcHHHHHHcCCCCcCcccceEEEECCCCEEEEEEecCCCCCcCHHHHH
Confidence 6789999999999999999999999999999999 999999999999999999843 333344433
|
| >1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-22 Score=218.44 Aligned_cols=124 Identities=12% Similarity=0.131 Sum_probs=110.2
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHC---CCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCC
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAA---GLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTS 240 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~---gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~ 240 (1089)
..++||+.++|+.|+++|++++|+||+.....+..++.+ |+. .+||.++++ +++ .||+|++|+.+++++|++|+
T Consensus 129 ~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~~~~l~-~~fd~i~~~-~~~-~KP~p~~~~~~~~~lg~~p~ 205 (261)
T 1yns_A 129 AEFFADVVPAVRKWREAGMKVYIYSSGSVEAQKLLFGHSTEGDIL-ELVDGHFDT-KIG-HKVESESYRKIADSIGCSTN 205 (261)
T ss_dssp BCCCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHTBTTBCCG-GGCSEEECG-GGC-CTTCHHHHHHHHHHHTSCGG
T ss_pred cccCcCHHHHHHHHHhCCCeEEEEeCCCHHHHHHHHHhhcccChH-hhccEEEec-CCC-CCCCHHHHHHHHHHhCcCcc
Confidence 478999999999999999999999999999899988854 585 999999999 788 99999999999999999999
Q ss_pred cEEEEcCChhhHHHHHHcCCeEEEEcCCC-CHHHHhhcCCcEEecCcccCC
Q 001380 241 ECIVIEDALAGVQAAKAAQMRCIAVTTTL-SEERLKEASPSLIRKEIGSVS 290 (1089)
Q Consensus 241 ~~v~VGD~~~Di~aA~~aG~~~i~V~~g~-~~~~l~~~~~d~vi~dl~el~ 290 (1089)
+|+||||+.+|+.+|+++||++++|.++. ...+.....|++++.++.++.
T Consensus 206 ~~l~VgDs~~di~aA~~aG~~~i~v~~~~~~~~~~~~~~~~~~i~~l~el~ 256 (261)
T 1yns_A 206 NILFLTDVTREASAAEEADVHVAVVVRPGNAGLTDDEKTYYSLITSFSELY 256 (261)
T ss_dssp GEEEEESCHHHHHHHHHTTCEEEEECCTTCCCCCHHHHHHSCEESSGGGCB
T ss_pred cEEEEcCCHHHHHHHHHCCCEEEEEeCCCCCcccccccCCCEEECCHHHhC
Confidence 99999999999999999999999998743 332333346899999999984
|
| >3smv_A S-(-)-azetidine-2-carboxylate hydrolase; haloacid dehalogenase superfamily, L-azetidine-2- carboxylate; HET: GOL; 1.38A {Pseudomonas} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.3e-22 Score=213.11 Aligned_cols=205 Identities=19% Similarity=0.211 Sum_probs=159.2
Q ss_pred CCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcC------------CCH----HHHHHHHHhhcCCCC
Q 001380 77 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMG------------TGE----ANFLGGVASVKGVKG 140 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~------------~~~----~~~~~~~~~~~~~~~ 140 (1089)
+++|+|+||+||||+++...+..++.++++++|+..+.+++...+. ... ......+....+...
T Consensus 4 ~~~k~i~fD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (240)
T 3smv_A 4 TDFKALTFDCYGTLIDWETGIVNALQPLAKRTGKTFTSDELLEVFGRNESPQQTETPGALYQDILRAVYDRIAKEWGLEP 83 (240)
T ss_dssp GGCSEEEECCBTTTBCHHHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHHGGGCCSSCCSCHHHHHHHHHHHHHHHTTCCC
T ss_pred ccceEEEEeCCCcCcCCchhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHHHHhCCCC
Confidence 4589999999999999999999999999999999988776654332 111 122233333344331
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccC
Q 001380 141 FDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFEN 220 (1089)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~ 220 (1089)
. ... .+.+...+. ...++||+.++|+.|++ |++++|+||.....++..++. +. .+||.+++++++..
T Consensus 84 -~-~~~----~~~~~~~~~---~~~~~~~~~~~l~~l~~-~~~~~i~tn~~~~~~~~~l~~--l~-~~fd~i~~~~~~~~ 150 (240)
T 3smv_A 84 -D-AAE----REEFGTSVK---NWPAFPDTVEALQYLKK-HYKLVILSNIDRNEFKLSNAK--LG-VEFDHIITAQDVGS 150 (240)
T ss_dssp -C-HHH----HHHHHTGGG---GCCBCTTHHHHHHHHHH-HSEEEEEESSCHHHHHHHHTT--TC-SCCSEEEEHHHHTS
T ss_pred -C-HHH----HHHHHHHHh---cCCCCCcHHHHHHHHHh-CCeEEEEeCCChhHHHHHHHh--cC-CccCEEEEccccCC
Confidence 1 222 222322222 23789999999999999 799999999999888888887 54 77999999999999
Q ss_pred CCCCHHHHHHH---HHHcCCCCCcEEEEcCCh-hhHHHHHHcCCeEEEEcCCC-------CHHHHhhcCCcEEecCcccC
Q 001380 221 LKPAPDIFLSA---SKILNVPTSECIVIEDAL-AGVQAAKAAQMRCIAVTTTL-------SEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 221 ~KP~~~~~~~~---l~~lgv~p~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~-------~~~~l~~~~~d~vi~dl~el 289 (1089)
.||++++|..+ ++++|++|++|+||||+. +|+++|+++|+.+++++++. ..+......|+++++++.++
T Consensus 151 ~KP~~~~~~~~l~~~~~lgi~~~~~~~vGD~~~~Di~~a~~aG~~~~~~~~~~~~~g~g~~~~~~~~~~ad~v~~~~~el 230 (240)
T 3smv_A 151 YKPNPNNFTYMIDALAKAGIEKKDILHTAESLYHDHIPANDAGLVSAWIYRRHGKEGYGATHVPSRMPNVDFRFNSMGEM 230 (240)
T ss_dssp CTTSHHHHHHHHHHHHHTTCCGGGEEEEESCTTTTHHHHHHHTCEEEEECTTCC-------CCCSSCCCCSEEESSHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCCchhEEEECCCchhhhHHHHHcCCeEEEEcCCCcccCCCCCCCCcCCCCCCEEeCCHHHH
Confidence 99999999999 899999999999999997 99999999999999998651 22345557899999999987
Q ss_pred CHHHHHh
Q 001380 290 SLNDILT 296 (1089)
Q Consensus 290 ~i~~ll~ 296 (1089)
.++|.
T Consensus 231 --~~~l~ 235 (240)
T 3smv_A 231 --AEAHK 235 (240)
T ss_dssp --HHHHH
T ss_pred --HHHHH
Confidence 44443
|
| >2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, saccharom cerevisiae, structural genomics, PSI-2, protein structure initiative; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-21 Score=214.87 Aligned_cols=204 Identities=25% Similarity=0.272 Sum_probs=167.3
Q ss_pred CCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHh-HhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 001380 77 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVED-FLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYL 155 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (1089)
+++|+|+||+||||+++...+..++.++++++|. ....+ +....+.......+.+.... ........+.+.+.
T Consensus 33 m~ik~iifDlDGTLlds~~~~~~~~~~~~~~~g~-~~~~~~~~~~~G~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 106 (275)
T 2qlt_A 33 LKINAALFDVDGTIIISQPAIAAFWRDFGKDKPY-FDAEHVIHISHGWRTYDAIAKFAPDF-----ADEEYVNKLEGEIP 106 (275)
T ss_dssp EEESEEEECCBTTTEECHHHHHHHHHHHHTTCTT-CCHHHHHHHCTTCCHHHHHHHHCGGG-----CCHHHHHHHHHTHH
T ss_pred ccCCEEEECCCCCCCCCHHHHHHHHHHHHHHcCC-CCHHHHHHHhcCCCHHHHHHHHhccC-----CcHHHHHHHHHHHH
Confidence 3589999999999999999999999999998884 33333 34445666665555544321 22334444555554
Q ss_pred HHhcCCCCCCCCccHHHHHHHHHhC-CCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHH
Q 001380 156 DKYAKPNSGIGFPGALELINQCKSK-GLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKI 234 (1089)
Q Consensus 156 ~~~~~~~~~~~~pG~~~lL~~Lk~~-Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~ 234 (1089)
+.+... ..++||+.++|+.|++. |++++|+||.....++..++.+++. +|+.++++++....||++++|+.++++
T Consensus 107 ~~~~~~--~~~~~g~~~~L~~l~~~~g~~l~i~T~~~~~~~~~~l~~~~l~--~f~~i~~~~~~~~~kp~~~~~~~~~~~ 182 (275)
T 2qlt_A 107 EKYGEH--SIEVPGAVKLCNALNALPKEKWAVATSGTRDMAKKWFDILKIK--RPEYFITANDVKQGKPHPEPYLKGRNG 182 (275)
T ss_dssp HHHCTT--CEECTTHHHHHHHHHTSCGGGEEEECSSCHHHHHHHHHHHTCC--CCSSEECGGGCSSCTTSSHHHHHHHHH
T ss_pred HHHhcC--CCcCcCHHHHHHHHHhccCCeEEEEeCCCHHHHHHHHHHcCCC--ccCEEEEcccCCCCCCChHHHHHHHHH
Confidence 444333 36899999999999999 9999999999999999999999985 489999999899999999999999999
Q ss_pred cCC-------CCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCC
Q 001380 235 LNV-------PTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVS 290 (1089)
Q Consensus 235 lgv-------~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~ 290 (1089)
+|+ ++++|++|||+.+|+++|+++|+.+++|.++...+++.+..|++++.++.++.
T Consensus 183 lgi~~~~~~~~~~~~i~~GDs~nDi~~a~~AG~~~i~v~~~~~~~~~~~~~ad~v~~~~~el~ 245 (275)
T 2qlt_A 183 LGFPINEQDPSKSKVVVFEDAPAGIAAGKAAGCKIVGIATTFDLDFLKEKGCDIIVKNHESIR 245 (275)
T ss_dssp TTCCCCSSCGGGSCEEEEESSHHHHHHHHHTTCEEEEESSSSCHHHHTTSSCSEEESSGGGEE
T ss_pred cCCCccccCCCcceEEEEeCCHHHHHHHHHcCCEEEEECCCCCHHHHhhCCCCEEECChHHcC
Confidence 999 99999999999999999999999999999988777777778999999999983
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-21 Score=195.07 Aligned_cols=138 Identities=25% Similarity=0.332 Sum_probs=124.2
Q ss_pred CCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcH
Q 001380 424 RKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDL 503 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~ 503 (1089)
..+|+++|+|++ .+++|+.+++ ++++||++||+||++||++|+.++|.|++++++|+++++.+++|++ +++.
T Consensus 3 l~~g~~~p~f~l--~~~~G~~~~l-~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~-----d~~~ 74 (152)
T 2lrn_A 3 LATGSVAPAITG--IDLKGNSVSL-NDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVST-----DRRE 74 (152)
T ss_dssp SCTTEECCCCEE--ECSSSCEEES-GGGTTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEEC-----CSCH
T ss_pred ccCCCcCCCcee--EcCCCCEEeH-HHcCCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEc-----cCCH
Confidence 468999999995 4569999999 8999999999999999999999999999999999988899999976 3567
Q ss_pred HHHHHHHHHcCCccceeecC---ChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHHh
Q 001380 504 EAIRNAVLRYGISHPVVNDG---DMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFY 572 (1089)
Q Consensus 504 ~~~~~~~~~~~~~~~v~~d~---~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~~ 572 (1089)
+.+++++++++++|+++.|. +.++++.|+|.++|+++|||++|+++.++. ..+++.+.|+++++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~~l~~~~ 143 (152)
T 2lrn_A 75 EDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKEL---RGDDLYNTVEKFVNGA 143 (152)
T ss_dssp HHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTCCSSCEEEEECTTSEEEEECC---CTTHHHHHHHHHHTSS
T ss_pred HHHHHHHHHhCCCCeEEecccchhHHHHHHhCCCcCCeEEEECCCCeEEEeeC---CHHHHHHHHHHHHhhc
Confidence 89999999999999999998 789999999999999999999999999864 4567888888877643
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-21 Score=220.03 Aligned_cols=150 Identities=27% Similarity=0.529 Sum_probs=138.3
Q ss_pred cCCCCCCCCCCccc---cCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCC
Q 001380 423 NRKTTPIVPEFPAK---LDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDN 499 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~---~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~ 499 (1089)
...+|.++|+|+.. +.+.+|+++++ ++++||+|||+||++||++|+.++|.|++++++|+++++.||+|+++.+..
T Consensus 50 ~l~vG~~aPdF~~~~~wL~d~dG~~vsL-sdl~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~ 128 (352)
T 2hyx_A 50 QLESCGTAPDLKGITGWLNTPGNKPIDL-KSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAF 128 (352)
T ss_dssp SCCCCCBCCCCCSCCEEESSGGGCCCCG-GGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGG
T ss_pred ccCCCCcCCCccccccccCCCCCCEEcH-HHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccc
Confidence 46789999999932 23458999999 899999999999999999999999999999999998889999999877666
Q ss_pred hhcHHHHHHHHHHcCCccceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHHhc
Q 001380 500 EKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFYG 573 (1089)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~~~ 573 (1089)
+++.+.+++++++++++||++.|.+.++++.|+|.++|++||||++|+++.++.|....+.+.+.|++++++..
T Consensus 129 ~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~ygV~~~Pt~~lID~~G~Iv~~~~G~~~~~~l~~~I~~lL~e~~ 202 (352)
T 2hyx_A 129 EKVPGNVAKGAANLGISYPIALDNNYATWTNYRNRYWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQLLNDAK 202 (352)
T ss_dssp GGCHHHHHHHHHHHTCCSCEEECTTSHHHHHTTCCEESEEEEECTTSBEEEEEESBCCHHHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHcCCCccEEeCCcHHHHHHcCCCccCEEEEEeCCCeEEEEEcCCCCHHHHHHHHHHHHhhcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998765
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=214.27 Aligned_cols=230 Identities=15% Similarity=0.247 Sum_probs=173.0
Q ss_pred CCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCC--EEEEEecCCCCCCCCCCCCccccCCcceeEEee-CCCEEEEE
Q 001380 598 SPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGN--FIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNA-KKNLLYVA 674 (1089)
Q Consensus 598 ~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~--~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~-~g~~lyVa 674 (1089)
..+..|.+|++++ +|+|||+|..+++|.+++.+|+ .+..++..+..|.. ...+..|.+|++++ +|+ |||+
T Consensus 88 ~~~~~p~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~-----~~~~~~P~~ia~~~~~g~-lyv~ 160 (329)
T 3fvz_A 88 NLFYLPHGLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSD-----QNHFCQPTDVAVEPSTGA-VFVS 160 (329)
T ss_dssp TTCSSEEEEEECT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCS-----TTCCSSEEEEEECTTTCC-EEEE
T ss_pred CccCCceEEEECC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCC-----ccccCCCcEEEEeCCCCe-EEEE
Confidence 4578999999997 8889999999999999999988 67777765444432 34688999999999 676 9999
Q ss_pred EC-CCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCe-EEE
Q 001380 675 DT-ENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGV-TRA 752 (1089)
Q Consensus 675 D~-~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~-~~~ 752 (1089)
|+ .+++|++++.++..+.++...|.. .......+..|++|+++++++.|||++.++++|++|++.+|. +..
T Consensus 161 d~~~~~~I~~~~~~g~~~~~~~~~g~~-------~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~ 233 (329)
T 3fvz_A 161 DGYCNSRIVQFSPSGKFVTQWGEESSG-------SSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVRE 233 (329)
T ss_dssp ECSSCCEEEEECTTSCEEEEECEECCS-------SSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred eCCCCCeEEEEcCCCCEEEEeccCCCC-------CCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence 97 799999999877777777544421 112234578999999999967999999999999999998554 445
Q ss_pred EeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccc
Q 001380 753 FSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGS 832 (1089)
Q Consensus 753 ~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~ 832 (1089)
+...+. +.... .-...| |++++.+| .+||++..+++|++++..++......+. .
T Consensus 234 ~~~~~~-----~~~~~-~~~~~p-g~~~~~~g-~~~v~~~~~~~v~~~~~~~g~~~~~~~~------------------~ 287 (329)
T 3fvz_A 234 IKHASF-----GRNVF-AISYIP-GFLFAVNG-KPYFGDQEPVQGFVMNFSSGEIIDVFKP------------------V 287 (329)
T ss_dssp ECCTTT-----TTCEE-EEEEET-TEEEEEEC-CCCTTCSCCCCEEEEETTTCCEEEEECC------------------S
T ss_pred Eecccc-----CCCcc-eeeecC-CEEEEeCC-CEEeccCCCcEEEEEEcCCCeEEEEEcC------------------C
Confidence 532211 00000 001123 56666677 6888888888999999877765543321 0
Q ss_pred cccccCceEEEEccCCcEEEEeCCCCEEEEEeCCC
Q 001380 833 EVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPAS 867 (1089)
Q Consensus 833 ~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~ 867 (1089)
...+..|.+|+++++|++||+|..+++|+++++++
T Consensus 288 ~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 288 RKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp SSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred CCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 12377899999999999999999999999998753
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-19 Score=198.77 Aligned_cols=245 Identities=11% Similarity=0.191 Sum_probs=193.2
Q ss_pred CCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC
Q 001380 598 SPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE 677 (1089)
Q Consensus 598 ~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~ 677 (1089)
..+..|.+|++|+ +|+|||++..+++|.+++.+|++.. +... ..+..|.+|+++++|+ +||++..
T Consensus 17 ~~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~~~~~-~~~~------------~~~~~~~~i~~~~~g~-l~v~~~~ 81 (300)
T 2qc5_A 17 IPDSGPYGITSSE-DGKVWFTQHKANKISSLDQSGRIKE-FEVP------------TPDAKVMCLIVSSLGD-IWFTENG 81 (300)
T ss_dssp STTCCEEEEEECT-TSCEEEEETTTTEEEEECTTSCEEE-EECS------------STTCCEEEEEECTTSC-EEEEETT
T ss_pred CCCCCcceeeECC-CCCEEEEcCCCCeEEEECCCCceEE-EECC------------CCCCcceeEEECCCCC-EEEEecC
Confidence 4578999999997 7999999999999999999866554 3322 1245899999999998 9999998
Q ss_pred CCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCC
Q 001380 678 NHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDG 757 (1089)
Q Consensus 678 n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g 757 (1089)
+++|.++|.+ +.+..+.... ....|++++++++| .+||++.+++.|+++++. +.+..+...
T Consensus 82 ~~~v~~~d~~-g~~~~~~~~~---------------~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~~~~~~- 142 (300)
T 2qc5_A 82 ANKIGKLSKK-GGFTEYPLPQ---------------PDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD-GTIYEYDLP- 142 (300)
T ss_dssp TTEEEEECTT-SCEEEEECSS---------------TTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCEEEEECS-
T ss_pred CCeEEEECCC-CCeEEecCCC---------------CCCCCccceECCCC-CEEEEccCCCeEEEECCC-CCEEEccCC-
Confidence 9999999988 6666554211 02479999999877 899999989999999988 666655421
Q ss_pred ccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCcccccccc
Q 001380 758 YERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQ 837 (1089)
Q Consensus 758 ~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~ 837 (1089)
.....|.+|+++++| +||+++..++.|.+++++ +....+... ..+.
T Consensus 143 ------------~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~~-g~~~~~~~~--------------------~~~~ 188 (300)
T 2qc5_A 143 ------------NKGSYPAFITLGSDN-ALWFTENQNNSIGRITNT-GKLEEYPLP--------------------TNAA 188 (300)
T ss_dssp ------------STTCCEEEEEECTTS-SEEEEETTTTEEEEECTT-CCEEEEECS--------------------STTC
T ss_pred ------------CCCCCceeEEECCCC-CEEEEecCCCeEEEECCC-CcEEEeeCC--------------------CCCC
Confidence 123479999999998 699999999999999984 444433210 1145
Q ss_pred CceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEE
Q 001380 838 HPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRY 917 (1089)
Q Consensus 838 ~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~ 917 (1089)
.|.+++++++|++||++..+++|.++|+ ++.+..+... ..+..|.+|++|++|+|||++..+++|.+
T Consensus 189 ~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~------------~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 255 (300)
T 2qc5_A 189 APVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIP------------TPNARPHAITAGKNSEIWFTEWGANQIGR 255 (300)
T ss_dssp CEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECS------------STTCCEEEEEECSTTCEEEEETTTTEEEE
T ss_pred CcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECC------------CCCCCceEEEECCCCCEEEeccCCCeEEE
Confidence 7999999999999999999999999998 4555554321 13567999999999999999999999999
Q ss_pred EeCCCC
Q 001380 918 LDLNKE 923 (1089)
Q Consensus 918 ~~~~~~ 923 (1089)
+++.+.
T Consensus 256 ~~~~g~ 261 (300)
T 2qc5_A 256 ITNDNT 261 (300)
T ss_dssp ECTTSC
T ss_pred ECCCCc
Confidence 999553
|
| >3umb_A Dehalogenase-like hydrolase; 2.20A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.5e-22 Score=212.49 Aligned_cols=131 Identities=16% Similarity=0.302 Sum_probs=119.4
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEE
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIV 244 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~ 244 (1089)
.++||+.++|+.|+++|++++|+||.....++..++.+|+. .+|+.++++++....||++++|..+++++|+++++|+|
T Consensus 99 ~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~-~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 177 (233)
T 3umb_A 99 SAFPENVPVLRQLREMGLPLGILSNGNPQMLEIAVKSAGMS-GLFDHVLSVDAVRLYKTAPAAYALAPRAFGVPAAQILF 177 (233)
T ss_dssp EECTTHHHHHHHHHTTTCCEEEEESSCHHHHHHHHHTTTCT-TTCSEEEEGGGTTCCTTSHHHHTHHHHHHTSCGGGEEE
T ss_pred CCCCCHHHHHHHHHhCCCcEEEEeCCCHHHHHHHHHHCCcH-hhcCEEEEecccCCCCcCHHHHHHHHHHhCCCcccEEE
Confidence 78999999999999999999999999999999999999996 99999999999999999999999999999999999999
Q ss_pred EcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhcc
Q 001380 245 IEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTGG 298 (1089)
Q Consensus 245 VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~~ 298 (1089)
|||+.+|+.+|+++|+.+++|.++....+.....|++++.++.++ .++|...
T Consensus 178 vGD~~~Di~~a~~~G~~~~~v~~~~~~~~~~~~~~~~v~~~~~el--~~~l~~~ 229 (233)
T 3umb_A 178 VSSNGWDACGATWHGFTTFWINRLGHPPEALDVAPAAAGHDMRDL--LQFVQAR 229 (233)
T ss_dssp EESCHHHHHHHHHHTCEEEEECTTCCCCCSSSCCCSEEESSHHHH--HHHHHC-
T ss_pred EeCCHHHHHHHHHcCCEEEEEcCCCCCchhccCCCCEEECCHHHH--HHHHHHh
Confidence 999999999999999999999997633333356899999999998 6666543
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-21 Score=193.05 Aligned_cols=137 Identities=18% Similarity=0.169 Sum_probs=121.3
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhc
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKD 502 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~ 502 (1089)
...+|+++|+|++. +++|+.+++ ++++||++||+||++||++|+.++|.|++++++|++.++.+++|++ +++
T Consensus 4 ~~~~G~~~p~~~l~--~~~g~~~~l-~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~-----d~~ 75 (148)
T 3hcz_A 4 PLLLGKKAPNLYMT--DTTGTYRYL-YDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANI-----ERK 75 (148)
T ss_dssp CCCTTSBCCCCCCB--CTTSCBCCG-GGCCCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEEC-----CSS
T ss_pred ccCCCCcCCceEEe--cCCCCEEEh-HHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEe-----cCC
Confidence 45789999999964 569999999 8999999999999999999999999999999999988899999976 456
Q ss_pred HHHHHHHHHHcCCc-cceeecCChh--HHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 503 LEAIRNAVLRYGIS-HPVVNDGDMN--LWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 503 ~~~~~~~~~~~~~~-~~v~~d~~~~--l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
.+.+++++++++++ |+++.|.+.. +++.|+|.++|+++|||++|+++.++.|. +.++++++.+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~---~~~~~~l~~l~~ 143 (148)
T 3hcz_A 76 DEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKRIGY---ENLDDFLVQYEK 143 (148)
T ss_dssp SHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHCCCSSCEEEEECTTCBEEEESCCG---GGHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCceEEeccccchhHHHhcCcCCCCEEEEECCCCcEEEecCCH---HHHHHHHHHHHH
Confidence 67999999999999 9999999888 99999999999999999999999998876 445555554444
|
| >3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-21 Score=197.41 Aligned_cols=138 Identities=17% Similarity=0.235 Sum_probs=121.1
Q ss_pred ccCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEec-CCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCCh
Q 001380 422 ENRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWT-YCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNE 500 (1089)
Q Consensus 422 ~~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa-~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~ 500 (1089)
....+|+++|+|+..+.+.+|+++++ ++++||++||+||+ +||++|+.++|.|++++++|+++++.+|+|++
T Consensus 5 ~~l~~G~~~P~f~~~l~~~~G~~~~l-~~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~------ 77 (163)
T 3gkn_A 5 TDAVLELPAATFDLPLSLSGGTQTTL-RAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSR------ 77 (163)
T ss_dssp CCCCCCCCGGGGGCCEECSTTCEECS-GGGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEES------
T ss_pred cccccCCcCCCccccccCCCCCEEEH-HHhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeC------
Confidence 35679999999992223569999999 99999999999997 99999999999999999999988999999986
Q ss_pred hcHHHHHHHHHHcCCccceeecCChhHHHHhCCCc------------eeEEEEECCCCcEEEEecCCCchhhHHHHHH
Q 001380 501 KDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNS------------WPTFAVVGPNGKLLAQLAGEGHRKDLDDLVE 566 (1089)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~------------~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~ 566 (1089)
++.+.+++|+++++++|+++.|.+.++++.|++.. +|++||||++|+|++.+.+......++++++
T Consensus 78 d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~~~~~~~~~~~il~ 155 (163)
T 3gkn_A 78 DSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADAVLA 155 (163)
T ss_dssp SCHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEEEECSCCSTTHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCceEEECCcHHHHHHhCCccccccccccccCcceEEEEECCCCeEEEEEcCCCcccCHHHHHH
Confidence 47889999999999999999999999999999987 9999999999999999866555444444443
|
| >3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-21 Score=204.49 Aligned_cols=145 Identities=18% Similarity=0.263 Sum_probs=127.9
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCC-EEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCC--
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGK-VVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDN-- 499 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk-~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~-- 499 (1089)
...+|+++|+|++. +.+|+++++ ++++|| +|||+||++||++|+.++|.|++++++|+++++.||+|+++.+..
T Consensus 31 ~l~~G~~aP~f~l~--~~~G~~v~l-~~~~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~ 107 (218)
T 3u5r_E 31 SITLGTRAADFVLP--DAGGNLFTL-AEFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFP 107 (218)
T ss_dssp CCCTTCBCCCCCEE--CTTCCEECG-GGGTTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCG
T ss_pred cCCCCCcCCCcEeE--CCCCCEEeH-HHhCCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccc
Confidence 46799999999965 569999999 999999 599999999999999999999999999999899999998753322
Q ss_pred hhcHHHHHHHHHHcCCccceeecCChhHHHHhCCCceeEEEEECCCCcEEEEec---------CCCchhhHHHHHHHHHH
Q 001380 500 EKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLA---------GEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~---------G~~~~~~l~~~l~~~l~ 570 (1089)
+++.+.+++|+++++++|+++.|.+.++++.|+|..+|++||||++|+|+++.. +....+.+.+.|+.+++
T Consensus 108 ~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~P~~~liD~~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~ 187 (218)
T 3u5r_E 108 EETLERVGAEVKAYGYGFPYLKDASQSVAKAYGAACTPDFFLYDRERRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLK 187 (218)
T ss_dssp GGSHHHHHHHHHHHTCCSCEEECTTCHHHHHHTCCEESEEEEECTTCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHhCCCccEEECCccHHHHHcCCCCCCeEEEECCCCcEEEeccccccccccccccCHHHHHHHHHHHHc
Confidence 388999999999999999999999999999999999999999999999998743 23346778888887764
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.8e-21 Score=194.48 Aligned_cols=143 Identities=25% Similarity=0.455 Sum_probs=128.9
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhc
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKD 502 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~ 502 (1089)
...+|.++|+|++. +++|+.+++ ++++||++||+||++||++|+.++|.|++++++|++.++.+|+|++ +++
T Consensus 7 ~~~~g~~~p~~~l~--~~~g~~~~l-~~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~-----d~~ 78 (165)
T 3or5_A 7 ADARPTPAPSFSGV--TVDGKPFSS-ASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAV-----NEQ 78 (165)
T ss_dssp CCCCCCBCCCCEEE--CTTSCEEEG-GGGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEEC-----SCC
T ss_pred hhcCCCCCCCceee--CCCCCEech-hHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEEC-----CCC
Confidence 45789999999964 569999999 8999999999999999999999999999999999988899999976 467
Q ss_pred HHHHHHHHHHcCCccceeecCChhHHHHh------CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHHhcc
Q 001380 503 LEAIRNAVLRYGISHPVVNDGDMNLWREL------GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFYGK 574 (1089)
Q Consensus 503 ~~~~~~~~~~~~~~~~v~~d~~~~l~~~~------~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~~~~ 574 (1089)
.+.+++++++++++|+++.|.+ ++.+.| ++.++|+++|||++|+++.++.|..+.+.+.+.|+.+++...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~~~~ 155 (165)
T 3or5_A 79 LPNVKNYMKTQGIIYPVMMATP-ELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMALGAKAA 155 (165)
T ss_dssp HHHHHHHHHHHTCCSCEEECCH-HHHHHHHTTSTTCSCSSSEEEEECTTSBEEEEECSCCCHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCCCceEecCH-HHHHHHhhhhccCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHhhhcc
Confidence 8899999999999999999876 888998 8999999999999999999999999999999999999876554
|
| >3um9_A Haloacid dehalogenase, type II; haloacid dehalogenase-like hydrolase protein superfamily, defluorinase, hydrolase; 2.19A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-21 Score=205.56 Aligned_cols=132 Identities=18% Similarity=0.249 Sum_probs=119.7
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEE
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECI 243 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v 243 (1089)
..++||+.++|+.|+++|++++|+||.....++..++.+|+. .+|+.++++++....||++.+|..+++++|+++++|+
T Consensus 95 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~-~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 173 (230)
T 3um9_A 95 LTPFADVPQALQQLRAAGLKTAILSNGSRHSIRQVVGNSGLT-NSFDHLISVDEVRLFKPHQKVYELAMDTLHLGESEIL 173 (230)
T ss_dssp CCBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHTCG-GGCSEEEEGGGTTCCTTCHHHHHHHHHHHTCCGGGEE
T ss_pred CCCCCCHHHHHHHHHhCCCeEEEEeCCCHHHHHHHHHHCCCh-hhcceeEehhhcccCCCChHHHHHHHHHhCCCcccEE
Confidence 378999999999999999999999999999999999999996 9999999999999999999999999999999999999
Q ss_pred EEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhcc
Q 001380 244 VIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTGG 298 (1089)
Q Consensus 244 ~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~~ 298 (1089)
+|||+.+|+.+|+++|+.+++|.++....+.....|+++++++.++ ..+|...
T Consensus 174 ~iGD~~~Di~~a~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~el--~~~l~~~ 226 (230)
T 3um9_A 174 FVSCNSWDATGAKYFGYPVCWINRSNGVFDQLGVVPDIVVSDVGVL--ASRFSPV 226 (230)
T ss_dssp EEESCHHHHHHHHHHTCCEEEECTTSCCCCCSSCCCSEEESSHHHH--HHTCCC-
T ss_pred EEeCCHHHHHHHHHCCCEEEEEeCCCCccccccCCCcEEeCCHHHH--HHHHHHh
Confidence 9999999999999999999999998644444456899999999888 5555443
|
| >3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.7e-21 Score=203.47 Aligned_cols=201 Identities=16% Similarity=0.214 Sum_probs=151.6
Q ss_pred ceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHh-----------hhcCCCHHHH----HHHHHhhcCCCCCCH
Q 001380 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFL-----------PFMGTGEANF----LGGVASVKGVKGFDS 143 (1089)
Q Consensus 79 ~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~-----------~~~~~~~~~~----~~~~~~~~~~~~~~~ 143 (1089)
+|+|+||+||||+++...+..++.++++.+...-....+. ...+.+...+ ........+.. ..
T Consensus 8 ik~i~fDlDGTL~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 85 (234)
T 3ddh_A 8 IKVIAFDADDTLWSNEPFFQEVEKQYTDLLKPYGTSKEISAALFQTEMNNLQILGYGAKAFTISMVETALQISNGK--IA 85 (234)
T ss_dssp CCEEEECCBTTTBCCHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTHHHHCSSHHHHHHHHHHHHHHHTTTC--CC
T ss_pred ccEEEEeCCCCCccCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhhhcCCcchhHHHHHHHHHHHhcCC--CC
Confidence 8999999999999999888877776665543221222222 2334444332 22222222222 33
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCC-CeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCC
Q 001380 144 EAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKG-LKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLK 222 (1089)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~G-i~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~K 222 (1089)
.+...++.+.+.+.+... ..++||+.++++.|+++| ++++++||.....++..++.+++. .+|+.+++. .|
T Consensus 86 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~l~~~g~~~~~i~t~~~~~~~~~~l~~~~~~-~~f~~~~~~-----~k 157 (234)
T 3ddh_A 86 ADIIRQIVDLGKSLLKMP--IELLPGVKETLKTLKETGKYKLVVATKGDLLDQENKLERSGLS-PYFDHIEVM-----SD 157 (234)
T ss_dssp HHHHHHHHHHHHHHTTCC--CCBCTTHHHHHHHHHHHCCCEEEEEEESCHHHHHHHHHHHTCG-GGCSEEEEE-----SC
T ss_pred HHHHHHHHHHHHHHhhcc--CCcCccHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhCcH-hhhheeeec-----CC
Confidence 445556666666655543 378999999999999999 999999999999999999999996 999999874 58
Q ss_pred CCHHHHHHHHHHcCCCCCcEEEEcCCh-hhHHHHHHcCCeEEEEcCC----CCHHHHhhcCCcEEecCcccC
Q 001380 223 PAPDIFLSASKILNVPTSECIVIEDAL-AGVQAAKAAQMRCIAVTTT----LSEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 223 P~~~~~~~~l~~lgv~p~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g----~~~~~l~~~~~d~vi~dl~el 289 (1089)
|++.+|+.+++++|++|++|++|||+. +|+.+|+++|+.+++|.+| ....+.....++++++++.||
T Consensus 158 pk~~~~~~~~~~lgi~~~~~i~iGD~~~~Di~~a~~aG~~~v~v~~~~~~g~~~~~~~~~~~d~v~~~l~el 229 (234)
T 3ddh_A 158 KTEKEYLRLLSILQIAPSELLMVGNSFKSDIQPVLSLGGYGVHIPFEVMWKHEVTETFAHERLKQVKRLDDL 229 (234)
T ss_dssp CSHHHHHHHHHHHTCCGGGEEEEESCCCCCCHHHHHHTCEEEECCCCTTCCCC---CCCCTTEEECSSGGGH
T ss_pred CCHHHHHHHHHHhCCCcceEEEECCCcHHHhHHHHHCCCeEEEecCCcccccCCcccccCCCceecccHHHH
Confidence 999999999999999999999999997 9999999999999999544 434444455669999999988
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-21 Score=191.53 Aligned_cols=137 Identities=22% Similarity=0.325 Sum_probs=122.8
Q ss_pred cCCCCCCCCCCccccCCCCCceeeccc--ccCCCEEEEEEecCCCcchhhhhhhHHHHHHHc-CCCCEEEEEEeCCCCCC
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRR--DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKY-KDMPFTVVGVHSAKFDN 499 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~--~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~-~~~~v~vi~v~~~~~~~ 499 (1089)
...+|+++|+|++. +++|+.+++ + +++||++||+||++||++|+.++|.|.+++++| ++.++.+++|++
T Consensus 4 ~~~~g~~~p~~~l~--~~~g~~~~l-~~~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~----- 75 (148)
T 3fkf_A 4 KVTVGKSAPYFSLP--NEKGEKLSR-SAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISL----- 75 (148)
T ss_dssp -CCTTSBCCCCCEE--BTTSCEECT-TSTTTTTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEEC-----
T ss_pred cccCCCcCCCeEee--CCCCCEEec-cccccCCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEEC-----
Confidence 46789999999964 569999999 8 899999999999999999999999999999999 888899999976
Q ss_pred hhcHHHHHHHHHHcCCccceeecC---ChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 500 EKDLEAIRNAVLRYGISHPVVNDG---DMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~v~~d~---~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
+.+.+.+++++++++++|+++.|. +..+++.|+|.++|++++||++|+++.++. +.+.+.+.|+.+++
T Consensus 76 d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~~ll~ 146 (148)
T 3fkf_A 76 DIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYAILTLPTNILLSPTGKILARDI---QGEALTGKLKELLK 146 (148)
T ss_dssp CSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEESC---CHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcCCCCcCEEEEECCCCeEEEecC---CHHHHHHHHHHHHc
Confidence 456789999999999999999998 679999999999999999999999999865 67788888877654
|
| >2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.1e-21 Score=202.71 Aligned_cols=145 Identities=19% Similarity=0.249 Sum_probs=120.5
Q ss_pred cCCCCCCCCCCccccCCCC-CceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCC--
Q 001380 423 NRKTTPIVPEFPAKLDWLN-TAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDN-- 499 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~-g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~-- 499 (1089)
.......+|+|+++ +++ |++++| ++++||+|||+|||+||++|+ ++|.|++++++|+++++.||+|+++.|..
T Consensus 28 ~~~~~~~~pdF~l~--d~~~G~~v~L-sd~~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d~f~~~e 103 (215)
T 2i3y_A 28 HKDEKGTIYDYEAI--ALNKNEYVSF-KQYVGKHILFVNVATYCGLTA-QYPELNALQEELKPYGLVVLGFPCNQFGKQE 103 (215)
T ss_dssp CCCCCCCGGGCEEE--BSSSSCEEEG-GGGTTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECCCSTTCC
T ss_pred cccccCCcCCcEee--eCCCCCEEcH-HHhCCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCCeEEEEEEccccCcCC
Confidence 34567889999964 568 999999 999999999999999999999 99999999999998899999999877643
Q ss_pred hhcHHHHHHHHH------HcCCccceeecCC--h----hHHHHh-----------C--------------CCceeEEEEE
Q 001380 500 EKDLEAIRNAVL------RYGISHPVVNDGD--M----NLWREL-----------G--------------VNSWPTFAVV 542 (1089)
Q Consensus 500 ~~~~~~~~~~~~------~~~~~~~v~~d~~--~----~l~~~~-----------~--------------v~~~Pt~~li 542 (1089)
.++.+++++|++ +++++||++.|.+ + .++..+ + |...|++|||
T Consensus 104 ~~~~~~i~~f~~~~~~~~~~~~~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLI 183 (215)
T 2i3y_A 104 PGDNKEILPGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLV 183 (215)
T ss_dssp CSCHHHHHHHHHHTSSCTTCCCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEE
T ss_pred CCCHHHHHHHHHhccchhccCccceeEeeeccCCcccchHHHHHHhhCcccccccccccccccccccccccccCceEEEE
Confidence 346788999999 9999999987532 2 222221 1 2333899999
Q ss_pred CCCCcEEEEecCCCchhhHHHHHHHHHHH
Q 001380 543 GPNGKLLAQLAGEGHRKDLDDLVEAALLF 571 (1089)
Q Consensus 543 d~~G~i~~~~~G~~~~~~l~~~l~~~l~~ 571 (1089)
|++|+|+.++.|....+++++.|++++++
T Consensus 184 D~~G~vv~~~~g~~~~~~l~~~I~~ll~~ 212 (215)
T 2i3y_A 184 GPDGIPVMRWSHRATVSSVKTDILAYLKQ 212 (215)
T ss_dssp CTTSCEEEEECTTSCHHHHHHHHHHHGGG
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 99999999999988888999999888764
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-21 Score=199.95 Aligned_cols=140 Identities=21% Similarity=0.326 Sum_probs=127.7
Q ss_pred CCCCCCCCCCccccCCC--CCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCE------EEEEEeCC
Q 001380 424 RKTTPIVPEFPAKLDWL--NTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPF------TVVGVHSA 495 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~--~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v------~vi~v~~~ 495 (1089)
...|+++|+|++ .++ +|+.+++ ++++||++||+||++||++|+.++|.|++++++|+++++ .+|+|++
T Consensus 31 ~~~g~~~p~f~l--~~~~~~g~~~~l-~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~- 106 (183)
T 3lwa_A 31 EADRQQLPDIGG--DSLMEEGTQINL-SDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINV- 106 (183)
T ss_dssp GGGCCCCCCCEE--EBSSSTTCEEEG-GGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEEC-
T ss_pred cccCCCCCceec--cccccCCcEecH-HHhCCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEEC-
Confidence 457899999995 466 8999999 899999999999999999999999999999999988788 9999986
Q ss_pred CCCChh-cHHHHHHHHHHcCCccceeecCChhHHHHhC---CCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHH
Q 001380 496 KFDNEK-DLEAIRNAVLRYGISHPVVNDGDMNLWRELG---VNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLF 571 (1089)
Q Consensus 496 ~~~~~~-~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~---v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~ 571 (1089)
++ +.+.+++|+++++++|+++.|.+..+.+.|+ +.++|++||||++|++++++.|..+.+++.+.|+.++++
T Consensus 107 ----d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~ 182 (183)
T 3lwa_A 107 ----RDYSRDIAQDFVTDNGLDYPSIYDPPFMTAASLGGVPASVIPTTIVLDKQHRPAAVFLREVTSKDVLDVALPLVDE 182 (183)
T ss_dssp ----SCCCHHHHHHHHHHTTCCSCEEECTTCGGGGGTTTCCTTCCSEEEEECTTSCEEEEECSCCCHHHHHHHHHHHHHC
T ss_pred ----CCCCHHHHHHHHHHcCCCccEEECCcchHHHHhccCCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHhc
Confidence 33 7899999999999999999999999999885 899999999999999999999999999999999988763
|
| >3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-21 Score=198.02 Aligned_cols=141 Identities=19% Similarity=0.249 Sum_probs=127.8
Q ss_pred hccCCCCCCCCCCccccCCCCC--ceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCC
Q 001380 421 VENRKTTPIVPEFPAKLDWLNT--APLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFD 498 (1089)
Q Consensus 421 ~~~~~~g~~~P~f~~~~~~~~g--~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~ 498 (1089)
+....+|+++|+|++. +.+| +.+++ ++++||++||+||++||++|+.++|.|++++++ ++.+|+|++
T Consensus 27 ~~~~~~G~~~P~f~l~--~~~g~~~~~~l-~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~----~v~vv~vs~---- 95 (176)
T 3kh7_A 27 LPSALIGKPFPAFDLP--SVQDPARRLTE-ADLKGKPALVNVWGTWCPSCRVEHPELTRLAEQ----GVVIYGINY---- 95 (176)
T ss_dssp STTTTTTSBCCCCEEE--BSSCTTSEEEG-GGGCSSCEEEEEECTTCHHHHHHHHHHHHHHHT----TCEEEEEEE----
T ss_pred ccccccCCcCCCcEec--ccCCCCceecH-HHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHC----CCEEEEEeC----
Confidence 3456799999999965 4577 78999 999999999999999999999999999999886 699999975
Q ss_pred ChhcHHHHHHHHHHcCCccc-eeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHHhc
Q 001380 499 NEKDLEAIRNAVLRYGISHP-VVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFYG 573 (1089)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~-v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~~~ 573 (1089)
+++.+.+++++++++++|+ ++.|.+..+++.|+|.++|++||||++|+|++++.|..+.+.+.+.|+++++...
T Consensus 96 -~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~l~ 170 (176)
T 3kh7_A 96 -KDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVYGAPETYLIDKQGIIRHKIVGVVDQKVWREQLAPLYQQLL 170 (176)
T ss_dssp -SCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCCSSCEEEEECTTCBEEEEEESCCCHHHHHHHTHHHHHHHH
T ss_pred -CCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCCCCCCeEEEECCCCeEEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence 4788999999999999997 5889999999999999999999999999999999999999999999999888754
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.85 E-value=4e-21 Score=191.69 Aligned_cols=143 Identities=25% Similarity=0.469 Sum_probs=131.1
Q ss_pred CCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHH
Q 001380 425 KTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLE 504 (1089)
Q Consensus 425 ~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~ 504 (1089)
.+|+.+|+|++. +++|+.+++ ++++||++||+||++||++|+.++|.|++++++|++.++.+++|+.+ .++.+
T Consensus 3 ~~G~~~p~~~l~--~~~g~~~~l-~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~----~~~~~ 75 (153)
T 2l5o_A 3 LDSKTAPAFSLP--DLHGKTVSN-ADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQP----IDPIE 75 (153)
T ss_dssp -CCTTCCSCEEE--CTTSCEEEH-HHHTTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECT----TSCHH
T ss_pred CCCCCCCCcEee--cCCCCCccH-HHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecC----CCCHH
Confidence 479999999964 569999999 88999999999999999999999999999999999888999999852 46788
Q ss_pred HHHHHHHHcCCccceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHHhcc
Q 001380 505 AIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFYGK 574 (1089)
Q Consensus 505 ~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~~~~ 574 (1089)
.+++++++++++|+++.|.+..+++.|+|.++|+++|||++|+++.++.|..+.+.+.+.|+.+++....
T Consensus 76 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~~~~ 145 (153)
T 2l5o_A 76 SVRQYVKDYGLPFTVMYDADKAVGQAFGTQVYPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTAWRNSDA 145 (153)
T ss_dssp HHHHHHHHTTCCSEEEECSSCHHHHHHTCCSSSEEEEECSSSCCCEEEESSCCHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHcCCCceEEcCchHHHHHHcCCCccCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999886543
|
| >3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 1.59A {Pyrococcus horikoshii} SCOP: c.108.1.1 PDB: 1x42_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-21 Score=207.93 Aligned_cols=129 Identities=22% Similarity=0.305 Sum_probs=118.7
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEE
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIV 244 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~ 244 (1089)
.++||+.++|+.|+++ ++++|+||.....++..++.+|+. .+|+.++++++....||++.+|+.+++++|++|++|++
T Consensus 100 ~~~~~~~~~l~~l~~~-~~~~i~t~~~~~~~~~~l~~~~~~-~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 177 (234)
T 3u26_A 100 ELYPEVVEVLKSLKGK-YHVGMITDSDTEQAMAFLDALGIK-DLFDSITTSEEAGFFKPHPRIFELALKKAGVKGEEAVY 177 (234)
T ss_dssp CBCTTHHHHHHHHTTT-SEEEEEESSCHHHHHHHHHHTTCG-GGCSEEEEHHHHTBCTTSHHHHHHHHHHHTCCGGGEEE
T ss_pred CcCcCHHHHHHHHHhC-CcEEEEECCCHHHHHHHHHHcCcH-HHcceeEeccccCCCCcCHHHHHHHHHHcCCCchhEEE
Confidence 6899999999999999 999999999999999999999996 99999999999999999999999999999999999999
Q ss_pred EcCCh-hhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhcc
Q 001380 245 IEDAL-AGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTGG 298 (1089)
Q Consensus 245 VGD~~-~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~~ 298 (1089)
|||+. +|+.+|+++|+.+++|.++....+... .|++++.++.++ .++|...
T Consensus 178 vGD~~~~Di~~a~~aG~~~~~v~~~~~~~~~~~-~a~~~~~~~~el--~~~l~~~ 229 (234)
T 3u26_A 178 VGDNPVKDCGGSKNLGMTSILLDRKGEKREFWD-KCDFIVSDLREV--IKIVDEL 229 (234)
T ss_dssp EESCTTTTHHHHHTTTCEEEEECSSSTTGGGGG-GCSEEESSTHHH--HHHHHHH
T ss_pred EcCCcHHHHHHHHHcCCEEEEECCCCCcccccc-CCCEeeCCHHHH--HHHHHHH
Confidence 99998 999999999999999999875555544 799999999998 6666543
|
| >2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-21 Score=203.87 Aligned_cols=143 Identities=20% Similarity=0.247 Sum_probs=119.5
Q ss_pred CCCCCCCCCccccCCCC-CceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCC--hh
Q 001380 425 KTTPIVPEFPAKLDWLN-TAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDN--EK 501 (1089)
Q Consensus 425 ~~g~~~P~f~~~~~~~~-g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~--~~ 501 (1089)
..++.+|+|++ .+++ |+++++ ++++||+|||+|||+||++|+.++|.|++++++|+++++.||+|+++.|.. .+
T Consensus 21 ~~~~~~p~f~l--~~~~~G~~v~l-~~~~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d~~~~~e~d 97 (208)
T 2f8a_A 21 QSMQSVYAFSA--RPLAGGEPVSL-GSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENA 97 (208)
T ss_dssp -CCCCGGGCEE--CBTTCSSCEEG-GGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCS
T ss_pred hhcCccCceEe--eeCCCCCCccH-HHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEEECCcccccCCC
Confidence 46788999995 4668 999999 899999999999999999999999999999999998899999999865532 24
Q ss_pred cHHHHHHHHH------HcCCccceeecCC--hh----HHH----Hh-------------------------CCCceeEEE
Q 001380 502 DLEAIRNAVL------RYGISHPVVNDGD--MN----LWR----EL-------------------------GVNSWPTFA 540 (1089)
Q Consensus 502 ~~~~~~~~~~------~~~~~~~v~~d~~--~~----l~~----~~-------------------------~v~~~Pt~~ 540 (1089)
+.+.+++|++ +++++||++.|.+ +. ++. .+ +|.+.|++|
T Consensus 98 ~~~~i~~f~~~~~~~~~~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tf 177 (208)
T 2f8a_A 98 KNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKF 177 (208)
T ss_dssp CHHHHHHHHHHTSSCTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEE
T ss_pred CHHHHHHHHHhcccccccccceEEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEE
Confidence 6788999998 8999999986422 21 222 22 266679999
Q ss_pred EECCCCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 541 VVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 541 lid~~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
|||++|+|+.++.|..+.+++.+.|+++++
T Consensus 178 lID~~G~i~~~~~g~~~~~~l~~~I~~ll~ 207 (208)
T 2f8a_A 178 LVGPDGVPLRRYSRRFQTIDIEPDIEALLS 207 (208)
T ss_dssp EECTTSCEEEEECTTSCGGGGHHHHHHHHC
T ss_pred EEcCCCcEEEEeCCCCCHHHHHHHHHHHhh
Confidence 999999999999999999999999888774
|
| >2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.5e-21 Score=196.73 Aligned_cols=144 Identities=13% Similarity=0.139 Sum_probs=122.4
Q ss_pred CCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCC--hh
Q 001380 424 RKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDN--EK 501 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~--~~ 501 (1089)
.++|+.+|+|++. +++|+++++ ++++||++||+||++||++|+.++|.|++++++|+++++.+|+|+++.|.. .+
T Consensus 5 ~~~g~~~p~f~l~--~~~G~~~~l-~~~~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~ 81 (169)
T 2v1m_A 5 HKSWNSIYEFTVK--DINGVDVSL-EKYRGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPW 81 (169)
T ss_dssp --CCCSGGGCEEE--BTTSCEEEG-GGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCS
T ss_pred ccCCcccccceee--cCCCCCccH-HHcCCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCCCC
Confidence 4689999999964 569999999 899999999999999999999999999999999998889999999865432 24
Q ss_pred cHHHHHHH-HHHcCCccceee--cCChhHHH-Hh--------C-----CCceeEEEEECCCCcEEEEecCCCchhhHHHH
Q 001380 502 DLEAIRNA-VLRYGISHPVVN--DGDMNLWR-EL--------G-----VNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDL 564 (1089)
Q Consensus 502 ~~~~~~~~-~~~~~~~~~v~~--d~~~~l~~-~~--------~-----v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~ 564 (1089)
+.+.+++| .++++++||++. |.++.++. .| + +.++|++||||++|++++++.|..+.+.+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~ 161 (169)
T 2v1m_A 82 AEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGD 161 (169)
T ss_dssp CHHHHHHHHHHHHCCCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEECTTSCGGGGHHH
T ss_pred CHHHHHHHHHHhcCCCCceEEEEeecCccccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEcCCCCCHHHHHHH
Confidence 68899999 599999999985 66555432 22 5 55679999999999999999999889999999
Q ss_pred HHHHHH
Q 001380 565 VEAALL 570 (1089)
Q Consensus 565 l~~~l~ 570 (1089)
|+++++
T Consensus 162 i~~ll~ 167 (169)
T 2v1m_A 162 IMELLE 167 (169)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988875
|
| >2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=7e-21 Score=205.23 Aligned_cols=128 Identities=23% Similarity=0.311 Sum_probs=116.8
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEE
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIV 244 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~ 244 (1089)
.++||+.++|+.|+++|++++|+||.....++..++.+|+. .+|+.++++++.+..||++++|+.+++++|++|++|+|
T Consensus 105 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~-~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~ 183 (240)
T 2no4_A 105 SAYPDAAETLEKLKSAGYIVAILSNGNDEMLQAALKASKLD-RVLDSCLSADDLKIYKPDPRIYQFACDRLGVNPNEVCF 183 (240)
T ss_dssp CBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCG-GGCSEEEEGGGTTCCTTSHHHHHHHHHHHTCCGGGEEE
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHhcCcH-HHcCEEEEccccCCCCCCHHHHHHHHHHcCCCcccEEE
Confidence 78999999999999999999999999999999999999996 99999999999999999999999999999999999999
Q ss_pred EcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCC-cEEecCcccCCHHHHHh
Q 001380 245 IEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASP-SLIRKEIGSVSLNDILT 296 (1089)
Q Consensus 245 VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~-d~vi~dl~el~i~~ll~ 296 (1089)
|||+.+|+++|+++|+.+++|.++...+.+ ...| ++++.++.++ .++|.
T Consensus 184 iGD~~~Di~~a~~aG~~~~~v~~~~~~~~~-~~~~~~~~~~~~~el--~~~l~ 233 (240)
T 2no4_A 184 VSSNAWDLGGAGKFGFNTVRINRQGNPPEY-EFAPLKHQVNSLSEL--WPLLA 233 (240)
T ss_dssp EESCHHHHHHHHHHTCEEEEECTTCCCCCC-TTSCCSEEESSGGGH--HHHHC
T ss_pred EeCCHHHHHHHHHCCCEEEEECCCCCCCcc-cCCCCceeeCCHHHH--HHHHH
Confidence 999999999999999999999987652222 3468 9999999988 55554
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.8e-21 Score=188.96 Aligned_cols=137 Identities=19% Similarity=0.356 Sum_probs=122.2
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhc
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKD 502 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~ 502 (1089)
...+|+++|+|++. +++|+.+++ ++ +||++||+||++||++|+.++|.|++++++|++.++.+++|+++. .+++
T Consensus 8 ~~~~g~~~p~~~l~--~~~g~~~~l-~~-~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~--~~~~ 81 (145)
T 3erw_A 8 EEKQPAVPAVFLMK--TIEGEDISI-PN-KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVN--SEQN 81 (145)
T ss_dssp ----CCSCCEEEEE--CTTSCEEEE-SC-TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGG--GSSC
T ss_pred cccCCCcCCCceee--cCCCCEEeH-HH-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccC--CcCC
Confidence 45689999999954 569999999 77 999999999999999999999999999999997789999998731 2348
Q ss_pred HHHHHHHHHHcCCccceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHH
Q 001380 503 LEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLV 565 (1089)
Q Consensus 503 ~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l 565 (1089)
.+.+++++++++++|+++.|.+..+++.|+|.++|+++|||++|+++.++.|..+.+.+.++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l 144 (145)
T 3erw_A 82 QQVVEDFIKANKLTFPIVLDSKGELMKEYHIITIPTSFLLNEKGEIEKTKIGPMTAEQLKEWT 144 (145)
T ss_dssp HHHHHHHHHHTTCCSCEEECSSSHHHHHTTCCEESEEEEECTTCCEEEEEESCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCceeEEEcCchhHHHhcCcCccCeEEEEcCCCcEEEEEcCCcCHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999988887765
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.6e-21 Score=189.92 Aligned_cols=138 Identities=28% Similarity=0.375 Sum_probs=123.7
Q ss_pred CCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcH
Q 001380 424 RKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDL 503 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~ 503 (1089)
..+|+++|+|++. + +|+.+++ ++++||++||+||++||++|+.++|.|.+++++|++.++.+|+|++ +.+.
T Consensus 3 l~~G~~~P~f~l~--~-~g~~~~l-~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~-----d~~~ 73 (152)
T 3gl3_A 3 LDKGDKAPDFALP--G-KTGVVKL-SDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNL-----DAKT 73 (152)
T ss_dssp CCTTSBCCCCEEE--B-SSSEEEG-GGGTTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEEC-----CSSH
T ss_pred CCCCCcCCceEee--C-CCCeEeH-HHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEC-----CCCH
Confidence 4689999999964 5 8899999 8999999999999999999999999999999999988899999976 4468
Q ss_pred HHHHHHHHHcCCccceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCc--hhhHHHHHHHHHH
Q 001380 504 EAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGH--RKDLDDLVEAALL 570 (1089)
Q Consensus 504 ~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~--~~~l~~~l~~~l~ 570 (1089)
+.+++++++++++|+++.|.+.++++.|+|.++|+++|||++|++++++.|... .+.+.+.|++.+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~~ 142 (152)
T 3gl3_A 74 GDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKGMPTSFLIDRNGKVLLQHVGFRPADKEALEQQILAALG 142 (152)
T ss_dssp HHHHHHHHHSCCCSEEEECTTCHHHHHTTCCSSSEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCCceeECCcchhHHHcCCCCCCeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHHc
Confidence 899999999999999999999999999999999999999999999999988643 3567777665543
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.5e-21 Score=189.93 Aligned_cols=140 Identities=24% Similarity=0.421 Sum_probs=124.2
Q ss_pred CCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHH
Q 001380 425 KTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLE 504 (1089)
Q Consensus 425 ~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~ 504 (1089)
.+|+++|+|++. +.+|+.+++ ++++||++||+||++||++|+.++|.|++++++|++.++.+++|+++ .++.+
T Consensus 3 ~~G~~~p~~~l~--~~~g~~~~l-~~~~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d----~~~~~ 75 (154)
T 3kcm_A 3 LEENPAPDFTLN--TLNGEVVKL-SDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSID----EGGKV 75 (154)
T ss_dssp CTTSBCCCCEEE--CTTSCEEEG-GGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECC----TTHHH
T ss_pred CCCCCCCCeEEE--cCCCCEEeh-hhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcC----CcchH
Confidence 579999999964 569999999 89999999999999999999999999999999999888999999863 23588
Q ss_pred HHHHHHHHcCCccceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCC--chhhHHHHHHHHHHH
Q 001380 505 AIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEG--HRKDLDDLVEAALLF 571 (1089)
Q Consensus 505 ~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~--~~~~l~~~l~~~l~~ 571 (1089)
.+++++++++++|+++.|.+..+++.|++.++|+++|||++|++++++.|.. ..+.+.+.|+.+...
T Consensus 76 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l~~~ 144 (154)
T 3kcm_A 76 AVEEFFRKTGFTLPVLLDADKRVGKLYGTTGVPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNELSK 144 (154)
T ss_dssp HHHHHHHHHCCCCCEEECTTCHHHHHHTCCSBCEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC---
T ss_pred HHHHHHHHcCCCeeEEecCchHHHHHhCCCCCCeEEEECCCCcEEEEEcCCCccccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998876 455777777665544
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.8e-21 Score=190.83 Aligned_cols=134 Identities=23% Similarity=0.359 Sum_probs=117.4
Q ss_pred CCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHH
Q 001380 429 IVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRN 508 (1089)
Q Consensus 429 ~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~ 508 (1089)
++|+|. + +.+|+.+++ ++++||++||+||++||++|+.++|.|++++++|++.++.+|+|++ ++.+.+++
T Consensus 4 pa~~~~--~-~~~G~~~~l-~~~~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~------d~~~~~~~ 73 (151)
T 3raz_A 4 SADELA--G-WKDNTPQSL-QSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIAL------DTSDNIGN 73 (151)
T ss_dssp ---CEE--E-TTTCCEECG-GGCCSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEES------SCHHHHHH
T ss_pred Ccchhh--c-ccCCCEecH-HHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEEC------CChHHHHH
Confidence 344554 3 269999999 8999999999999999999999999999999999888999999986 45688999
Q ss_pred HHHHcCCccceeecC---ChhHHHHhC--CCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHHh
Q 001380 509 AVLRYGISHPVVNDG---DMNLWRELG--VNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFY 572 (1089)
Q Consensus 509 ~~~~~~~~~~v~~d~---~~~l~~~~~--v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~~ 572 (1089)
|+++++++||++.|. ..++++.|+ +.++|++||||++|++++++.|..+.+.+.+.|+.+.+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~~~~ 142 (151)
T 3raz_A 74 FLKQTPVSYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAHSKC 142 (151)
T ss_dssp HHHHSCCSSCEEEECCSCHHHHHHTTTCCSCCSSEEEEEETTTTEEEECCSCCCHHHHHHHHHHHHTC-
T ss_pred HHHHcCCCCceEecCccchHHHHHHhCCccCCCCEEEEECCCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 999999999998765 456889999 9999999999999999999999999999999998877643
|
| >2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-21 Score=201.92 Aligned_cols=144 Identities=14% Similarity=0.148 Sum_probs=118.7
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCC--h
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDN--E 500 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~--~ 500 (1089)
..++|+++|+|++. +++|+++++ ++++||++||+||++||++|+.++|.|++++++|+++++.||+|+++.+.. .
T Consensus 22 ~~~~g~~~p~f~l~--~~~G~~~~l-~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~ 98 (181)
T 2p31_A 22 SMQQEQDFYDFKAV--NIRGKLVSL-EKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEP 98 (181)
T ss_dssp -----CCGGGCEEE--BTTSCEEEG-GGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCC
T ss_pred cCCcCCccCceEee--cCCCCEecH-HHcCCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCC
Confidence 45689999999964 569999999 899999999999999999999999999999999998899999999865432 2
Q ss_pred hcHHHHHHHHHH-cCCccceee--cCChhHHH---HhCCCcee-------EEEEECCCCcEEEEecCCCchhhHHHHHHH
Q 001380 501 KDLEAIRNAVLR-YGISHPVVN--DGDMNLWR---ELGVNSWP-------TFAVVGPNGKLLAQLAGEGHRKDLDDLVEA 567 (1089)
Q Consensus 501 ~~~~~~~~~~~~-~~~~~~v~~--d~~~~l~~---~~~v~~~P-------t~~lid~~G~i~~~~~G~~~~~~l~~~l~~ 567 (1089)
++.+.+++|+++ ++++||++. |.++.... .|++..+| ++||||++|++++++.|..+.+++.+.|++
T Consensus 99 ~~~~~~~~~~~~~~~~~~p~~~~~d~~g~~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ 178 (181)
T 2p31_A 99 DSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITA 178 (181)
T ss_dssp SCHHHHHHHHHHHHCCCSCBBCCCCCSSTTSCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHHhhcCCCceeEeecccCCccchhhhhhhhhcCCCccccceeEEEEcCCCCEEEEeCCCCCHHHHHHHHHH
Confidence 478899999999 999999985 44443322 45688899 999999999999999998888888777765
Q ss_pred HH
Q 001380 568 AL 569 (1089)
Q Consensus 568 ~l 569 (1089)
++
T Consensus 179 ll 180 (181)
T 2p31_A 179 LV 180 (181)
T ss_dssp TC
T ss_pred Hh
Confidence 43
|
| >3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-21 Score=202.49 Aligned_cols=193 Identities=19% Similarity=0.293 Sum_probs=148.6
Q ss_pred CCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 001380 77 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLD 156 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1089)
+++|+|+||+||||+++... +.++++++|+....+....+.+... ........+.+.+.+
T Consensus 4 ~~~k~iifDlDGTL~d~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~ 63 (205)
T 3m9l_A 4 SEIKHWVFDMDGTLTIAVHD----FAAIREALSIPAEDDILTHLAALPA----------------DESAAKHAWLLEHER 63 (205)
T ss_dssp GGCCEEEECTBTTTEEEEEC----HHHHHHHTTCCTTSCHHHHHHHSCH----------------HHHHHHHHHHHHTHH
T ss_pred ccCCEEEEeCCCcCcccHHH----HHHHHHHhCCCchHHHHHHHhcCCh----------------HHHHHHHHHHHHHHH
Confidence 45799999999999997764 4467777887754222211111100 112222333333433
Q ss_pred HhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCc--cEEEEcCCccCCCCCHHHHHHHHHH
Q 001380 157 KYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMF--DAIVSADAFENLKPAPDIFLSASKI 234 (1089)
Q Consensus 157 ~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~f--d~i~~~~~~~~~KP~~~~~~~~l~~ 234 (1089)
.+... ..++||+.++|+.|+++|++++|+||.....++..++.+|+. .+| +.+++.+. ..+||++.+|+.++++
T Consensus 64 ~~~~~--~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~-~~f~~~~i~~~~~-~~~kp~~~~~~~~~~~ 139 (205)
T 3m9l_A 64 DLAQG--SRPAPGAVELVRELAGRGYRLGILTRNARELAHVTLEAIGLA-DCFAEADVLGRDE-APPKPHPGGLLKLAEA 139 (205)
T ss_dssp HHEEE--EEECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCG-GGSCGGGEECTTT-SCCTTSSHHHHHHHHH
T ss_pred HHhhc--CCCCccHHHHHHHHHhcCCeEEEEeCCchHHHHHHHHHcCch-hhcCcceEEeCCC-CCCCCCHHHHHHHHHH
Confidence 33332 278999999999999999999999999999999999999996 999 88888876 7899999999999999
Q ss_pred cCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhcc
Q 001380 235 LNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTGG 298 (1089)
Q Consensus 235 lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~~ 298 (1089)
+|+++++|+||||+.+|+++|+++|+.+|++.++.. .+ ...|++++.++.|| ..++...
T Consensus 140 ~g~~~~~~i~iGD~~~Di~~a~~aG~~~i~v~~~~~--~~-~~~ad~v~~~~~el--~~~~~~~ 198 (205)
T 3m9l_A 140 WDVSPSRMVMVGDYRFDLDCGRAAGTRTVLVNLPDN--PW-PELTDWHARDCAQL--RDLLSAE 198 (205)
T ss_dssp TTCCGGGEEEEESSHHHHHHHHHHTCEEEECSSSSC--SC-GGGCSEECSSHHHH--HHHHHHT
T ss_pred cCCCHHHEEEECCCHHHHHHHHHcCCEEEEEeCCCC--cc-cccCCEEeCCHHHH--HHHHHhc
Confidence 999999999999999999999999999999998753 12 23589999999888 5555443
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-18 Score=193.64 Aligned_cols=240 Identities=15% Similarity=0.193 Sum_probs=187.6
Q ss_pred CCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCC
Q 001380 599 PLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTEN 678 (1089)
Q Consensus 599 ~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n 678 (1089)
.+..|.++++++ +|++||++..+++|.+++.+|+.. .+.... ....|.+++++++|+ +||++..+
T Consensus 60 ~~~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~g~~~-~~~~~~------------~~~~~~~i~~~~~g~-l~v~~~~~ 124 (300)
T 2qc5_A 60 PDAKVMCLIVSS-LGDIWFTENGANKIGKLSKKGGFT-EYPLPQ------------PDSGPYGITEGLNGD-IWFTQLNG 124 (300)
T ss_dssp TTCCEEEEEECT-TSCEEEEETTTTEEEEECTTSCEE-EEECSS------------TTCCEEEEEECSTTC-EEEEETTT
T ss_pred CCCcceeEEECC-CCCEEEEecCCCeEEEECCCCCeE-EecCCC------------CCCCCccceECCCCC-EEEEccCC
Confidence 357899999996 889999999899999999997764 333221 124799999999888 99999989
Q ss_pred CEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCc
Q 001380 679 HALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGY 758 (1089)
Q Consensus 679 ~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~ 758 (1089)
+.|.+++++ +.+..+.... ....|.+++++++| .||+++.+++.|++++. ++....+...
T Consensus 125 ~~i~~~~~~-g~~~~~~~~~---------------~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~-- 184 (300)
T 2qc5_A 125 DRIGKLTAD-GTIYEYDLPN---------------KGSYPAFITLGSDN-ALWFTENQNNSIGRITN-TGKLEEYPLP-- 184 (300)
T ss_dssp TEEEEECTT-SCEEEEECSS---------------TTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEEEEECS--
T ss_pred CeEEEECCC-CCEEEccCCC---------------CCCCceeEEECCCC-CEEEEecCCCeEEEECC-CCcEEEeeCC--
Confidence 999999988 6665553211 13479999999988 59999999999999998 5655555421
Q ss_pred cccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccC
Q 001380 759 ERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQH 838 (1089)
Q Consensus 759 ~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~ 838 (1089)
..+..|.+|+++++| .|||++..++.|.+++++ +....+... ..+..
T Consensus 185 -----------~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~~-g~~~~~~~~--------------------~~~~~ 231 (300)
T 2qc5_A 185 -----------TNAAAPVGITSGNDG-ALWFVEIMGNKIGRITTT-GEISEYDIP--------------------TPNAR 231 (300)
T ss_dssp -----------STTCCEEEEEECTTS-SEEEEETTTTEEEEECTT-CCEEEEECS--------------------STTCC
T ss_pred -----------CCCCCcceEEECCCC-CEEEEccCCCEEEEEcCC-CcEEEEECC--------------------CCCCC
Confidence 224579999999988 999999999999999984 444333110 11457
Q ss_pred ceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEE
Q 001380 839 PLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYL 918 (1089)
Q Consensus 839 P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~ 918 (1089)
|.++++|++|++||++..+++|.++|++ +.+..+... .....|.+|+++++|+|||++. + +|.++
T Consensus 232 ~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~------------~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~ 296 (300)
T 2qc5_A 232 PHAITAGKNSEIWFTEWGANQIGRITND-NTIQEYQLQ------------TENAEPHGITFGKDGSVWFALK-C-KIGKL 296 (300)
T ss_dssp EEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECC------------STTCCCCCEEECTTSCEEEECS-S-EEEEE
T ss_pred ceEEEECCCCCEEEeccCCCeEEEECCC-CcEEEEECC------------ccCCccceeEeCCCCCEEEEcc-C-ceEEe
Confidence 9999999999999999999999999985 555555321 1246699999999999999998 6 99999
Q ss_pred eCC
Q 001380 919 DLN 921 (1089)
Q Consensus 919 ~~~ 921 (1089)
+++
T Consensus 297 ~p~ 299 (300)
T 2qc5_A 297 NLN 299 (300)
T ss_dssp EEC
T ss_pred CCC
Confidence 874
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-18 Score=192.99 Aligned_cols=245 Identities=14% Similarity=0.231 Sum_probs=192.0
Q ss_pred CCCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC
Q 001380 597 TSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT 676 (1089)
Q Consensus 597 ~~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~ 676 (1089)
...+..|.++++|+ +|++|+++...++|.+++++|+... +... . ....|.+|+++++|+ +|+++.
T Consensus 11 ~~~~~~~~~i~~d~-~g~l~v~~~~~~~v~~~d~~~~~~~-~~~~-~-----------~~~~~~~i~~~~~g~-l~v~~~ 75 (299)
T 2z2n_A 11 TNQDTGPYGITVSD-KGKVWITQHKANMISCINLDGKITE-YPLP-T-----------PDAKVMCLTISSDGE-VWFTEN 75 (299)
T ss_dssp CSSSCCEEEEEECT-TSCEEEEETTTTEEEEECTTCCEEE-EECS-S-----------TTCCEEEEEECTTSC-EEEEET
T ss_pred CCcCCCccceEECC-CCCEEEEecCCCcEEEEcCCCCeEE-ecCC-c-----------ccCceeeEEECCCCC-EEEeCC
Confidence 34567899999997 8899999998899999999866543 3221 1 124799999999998 999998
Q ss_pred CCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCC
Q 001380 677 ENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGD 756 (1089)
Q Consensus 677 ~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~ 756 (1089)
.++.|.+++++ +.++.+.... ....|.+|+++++| .||+++.+++.|+++|+ ++....+...
T Consensus 76 ~~~~i~~~~~~-g~~~~~~~~~---------------~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~~~~~~ 137 (299)
T 2z2n_A 76 AANKIGRITKK-GIIKEYTLPN---------------PDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIREYELP 137 (299)
T ss_dssp TTTEEEEECTT-SCEEEEECSS---------------TTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEEECS
T ss_pred CCCeEEEECCC-CcEEEEeCCC---------------cCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEEEecCC
Confidence 88999999986 5555554211 13479999999977 89999998999999998 6666555421
Q ss_pred CccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccc
Q 001380 757 GYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLL 836 (1089)
Q Consensus 757 g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l 836 (1089)
.....|.+|+++++| ++|+++..++.|.++++ ++....+... ..+
T Consensus 138 -------------~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~--------------------~~~ 182 (299)
T 2z2n_A 138 -------------NKGSYPSFITLGSDN-ALWFTENQNNAIGRITE-SGDITEFKIP--------------------TPA 182 (299)
T ss_dssp -------------STTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEEECS--------------------STT
T ss_pred -------------CCCCCCceEEEcCCC-CEEEEeCCCCEEEEEcC-CCcEEEeeCC--------------------CCC
Confidence 123468999999998 99999999999999998 5555433110 014
Q ss_pred cCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEE
Q 001380 837 QHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIR 916 (1089)
Q Consensus 837 ~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~ 916 (1089)
..|.+++++++|++||++..++.|.++|+ ++.+..+... .....|.+|+++++|+|||++..+++|.
T Consensus 183 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 249 (299)
T 2z2n_A 183 SGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIP------------TPNARPHAITAGAGIDLWFTEWGANKIG 249 (299)
T ss_dssp CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECS------------STTCCEEEEEECSTTCEEEEETTTTEEE
T ss_pred CcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECC------------CCCCCceeEEECCCCCEEEeccCCceEE
Confidence 57999999999999999999999999999 6666655321 1356799999999999999999999999
Q ss_pred EEeCCC
Q 001380 917 YLDLNK 922 (1089)
Q Consensus 917 ~~~~~~ 922 (1089)
++++++
T Consensus 250 ~~d~~g 255 (299)
T 2z2n_A 250 RLTSNN 255 (299)
T ss_dssp EEETTT
T ss_pred EECCCC
Confidence 999954
|
| >2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-21 Score=199.98 Aligned_cols=146 Identities=16% Similarity=0.183 Sum_probs=124.8
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCC--h
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDN--E 500 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~--~ 500 (1089)
..+.++.+|+|++. +++|+++++ ++++||++||+||++||++|+.++|.|++++++|+++++.||+|+++.+.. .
T Consensus 21 ~~~~~~~~p~f~l~--~~~G~~~~l-~~~~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~ 97 (190)
T 2vup_A 21 HMSAASSIFDFEVL--DADHKPYNL-VQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEP 97 (190)
T ss_dssp ---CCCSGGGSCCB--BTTSSBCCG-GGGTTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCC
T ss_pred cCCCCCcccCeEEE--cCCCCEEEH-HHcCCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCC
Confidence 45678999999954 569999999 899999999999999999999999999999999998889999999865432 2
Q ss_pred hcHHHHHHHH-HHcCCccceee--cCChhHH---------HHhCCCcee------EEEEECCCCcEEEEecCCCchhhHH
Q 001380 501 KDLEAIRNAV-LRYGISHPVVN--DGDMNLW---------RELGVNSWP------TFAVVGPNGKLLAQLAGEGHRKDLD 562 (1089)
Q Consensus 501 ~~~~~~~~~~-~~~~~~~~v~~--d~~~~l~---------~~~~v~~~P------t~~lid~~G~i~~~~~G~~~~~~l~ 562 (1089)
++.+.+++|+ ++++++||++. |.++.++ +.|++.++| ++||||++|++++++.|....+.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~p~l~~~D~~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~ 177 (190)
T 2vup_A 98 GNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIE 177 (190)
T ss_dssp SCHHHHHHHHHHHHCCCSCBBCCCBSSSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEEECTTCCHHHHH
T ss_pred CCHHHHHHHHHHhcCCCeEEEeecccCcccccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEEECCCCCHHHHH
Confidence 4788999999 89999999986 5554432 235899999 9999999999999999998999999
Q ss_pred HHHHHHHHH
Q 001380 563 DLVEAALLF 571 (1089)
Q Consensus 563 ~~l~~~l~~ 571 (1089)
+.|+++++.
T Consensus 178 ~~i~~ll~~ 186 (190)
T 2vup_A 178 KKLIPLLES 186 (190)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 999988864
|
| >2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-21 Score=195.79 Aligned_cols=144 Identities=17% Similarity=0.224 Sum_probs=121.2
Q ss_pred CCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCC--hh
Q 001380 424 RKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDN--EK 501 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~--~~ 501 (1089)
..+|+.+|+|++ .+++|+++++ ++++||++||+||++||++|+.++|.|++++++|+++++.+|+|+++.+.. .+
T Consensus 6 ~~~g~~~p~f~l--~~~~g~~~~l-~~~~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~ 82 (170)
T 2p5q_A 6 SKNPESVHDFTV--KDAKENDVDL-SIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPG 82 (170)
T ss_dssp ----CCGGGCEE--EBTTSCEEEG-GGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCS
T ss_pred CCCCccccceEE--EcCCCCEecH-HHhCCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCC
Confidence 457999999995 4569999999 899999999999999999999999999999999998889999999865422 25
Q ss_pred cHHHHHHHHH-HcCCcccee--ecCChhHHH---------HhCC--Ccee---EEEEECCCCcEEEEecCCCchhhHHHH
Q 001380 502 DLEAIRNAVL-RYGISHPVV--NDGDMNLWR---------ELGV--NSWP---TFAVVGPNGKLLAQLAGEGHRKDLDDL 564 (1089)
Q Consensus 502 ~~~~~~~~~~-~~~~~~~v~--~d~~~~l~~---------~~~v--~~~P---t~~lid~~G~i~~~~~G~~~~~~l~~~ 564 (1089)
+.+.++++++ +++++||++ .|.++.++. .+++ .++| ++||||++|++++++.|..+.+.+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~~g~~~~~~l~~~ 162 (170)
T 2p5q_A 83 TNDQITDFVCTRFKSEFPIFDKIDVNGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERD 162 (170)
T ss_dssp CHHHHHHHHHHHTCCCSCBBCCCBSSSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHH
T ss_pred CHHHHHHHHHHhcCCCceeEeeeccCCCchHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEeeCCCCCHHHHHHH
Confidence 7889999999 899999998 566654431 2477 7888 999999999999999999888999999
Q ss_pred HHHHHH
Q 001380 565 VEAALL 570 (1089)
Q Consensus 565 l~~~l~ 570 (1089)
|+++++
T Consensus 163 i~~ll~ 168 (170)
T 2p5q_A 163 IKQLLE 168 (170)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 888764
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-19 Score=199.59 Aligned_cols=239 Identities=14% Similarity=0.152 Sum_probs=178.4
Q ss_pred CCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCC-
Q 001380 601 KFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENH- 679 (1089)
Q Consensus 601 ~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~- 679 (1089)
.+|.++++++ +|+|||+|..+++|++++++|+....+... ..|.||+++++|+ |||+|..++
T Consensus 32 ~~pegia~~~-~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~---------------~~p~gia~~~dG~-l~vad~~~~~ 94 (306)
T 2p4o_A 32 TFLENLASAP-DGTIFVTNHEVGEIVSITPDGNQQIHATVE---------------GKVSGLAFTSNGD-LVATGWNADS 94 (306)
T ss_dssp CCEEEEEECT-TSCEEEEETTTTEEEEECTTCCEEEEEECS---------------SEEEEEEECTTSC-EEEEEECTTS
T ss_pred CCcceEEECC-CCCEEEEeCCCCeEEEECCCCceEEEEeCC---------------CCceeEEEcCCCc-EEEEeccCCc
Confidence 7899999998 788999999999999999999877655432 1699999999999 999997643
Q ss_pred -EEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEE--eCC
Q 001380 680 -ALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAF--SGD 756 (1089)
Q Consensus 680 -~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~--~g~ 756 (1089)
+|.+++..++.++.++.... ...|.++++.+. +.+|+++..++.||++|+.++....+ .+.
T Consensus 95 ~~v~~~d~~~g~~~~~~~~~~---------------~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~ 158 (306)
T 2p4o_A 95 IPVVSLVKSDGTVETLLTLPD---------------AIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPM 158 (306)
T ss_dssp CEEEEEECTTSCEEEEEECTT---------------CSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGG
T ss_pred ceEEEEcCCCCeEEEEEeCCC---------------ccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeEEEECCc
Confidence 59999988888888764321 235788888764 49999999999999999887643332 221
Q ss_pred CccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCC-CCeEEEecCCCCCCCCccccCCCCCcccccc
Q 001380 757 GYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKT-GGSRLLAGGDPIFPDNLFKFGDRDGMGSEVL 835 (1089)
Q Consensus 757 g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~-~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~ 835 (1089)
... ......+..|+|| ++++++|||+|+.+++|++++.++ +... .. .....
T Consensus 159 ~~~------~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~-----------------~~---~~~~~ 210 (306)
T 2p4o_A 159 LAR------SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPG-----------------EP---EIFVE 210 (306)
T ss_dssp GSC------SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBC-----------------CC---EEEEE
T ss_pred ccc------ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCC-----------------cc---EEEec
Confidence 110 0112346689999 677779999999999999999874 2110 00 00112
Q ss_pred ccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEc---cCC-cEEEEECC
Q 001380 836 LQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEA---QNG-NLFIADTN 911 (1089)
Q Consensus 836 l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd---~~G-~lyVad~~ 911 (1089)
+..|.|+++|++|++||++..+++|.+||++ +.+..+.... ..+..|.+++++ +++ +|||++..
T Consensus 211 ~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~-----------~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 211 QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE-----------QGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG-----------GTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc-----------cccCCceEEEEecccCCCCEEEEECCC
Confidence 3579999999999999999999999999997 4554443211 135779999998 564 79999976
Q ss_pred C
Q 001380 912 N 912 (1089)
Q Consensus 912 n 912 (1089)
+
T Consensus 279 ~ 279 (306)
T 2p4o_A 279 G 279 (306)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A | Back alignment and structure |
|---|
Probab=99.85 E-value=4.6e-21 Score=197.09 Aligned_cols=149 Identities=15% Similarity=0.143 Sum_probs=123.6
Q ss_pred ccCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCC--
Q 001380 422 ENRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDN-- 499 (1089)
Q Consensus 422 ~~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~-- 499 (1089)
.....|..+|+|++. +++|+.+++ ++++||+|||+||++||++|+.++|.|++++++|+++++.||+|+++.|..
T Consensus 10 ~~~~~~~~~p~f~l~--d~~G~~v~l-~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~ 86 (180)
T 3kij_A 10 FLKPKINSFYAFEVK--DAKGRTVSL-EKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESE 86 (180)
T ss_dssp CCCCCCCCGGGCEEE--BTTSCEEEG-GGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCC
T ss_pred hhcCCcCcccceEEe--cCCCCEecH-HHcCCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCC
Confidence 345689999999964 669999999 999999999999999999999999999999999999899999999865432
Q ss_pred hhcHHHHHHHHHH-cCCccceeecC-----ChhHHHHhC---CCceeE----EEEECCCCcEEEEecCCCchhhHHHHHH
Q 001380 500 EKDLEAIRNAVLR-YGISHPVVNDG-----DMNLWRELG---VNSWPT----FAVVGPNGKLLAQLAGEGHRKDLDDLVE 566 (1089)
Q Consensus 500 ~~~~~~~~~~~~~-~~~~~~v~~d~-----~~~l~~~~~---v~~~Pt----~~lid~~G~i~~~~~G~~~~~~l~~~l~ 566 (1089)
.++.+.+++|+++ ++++||++.+. .......|. +.++|+ +||||++|++++++.|....+.+.+.|+
T Consensus 87 ~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~ 166 (180)
T 3kij_A 87 PRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIA 166 (180)
T ss_dssp CSCHHHHHHHHHHHHCCCSCBBCCCCCSSTTCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEECTTCCGGGTHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCCceeeeeeccCccccHHHHHHHhcCCCCccccceEEEECCCCCEEEEECCCCCHHHHHHHHH
Confidence 3588999999999 99999986522 121111222 235788 9999999999999999998888888888
Q ss_pred HHHHHhc
Q 001380 567 AALLFYG 573 (1089)
Q Consensus 567 ~~l~~~~ 573 (1089)
++|+...
T Consensus 167 ~lL~~~~ 173 (180)
T 3kij_A 167 ALVRQVI 173 (180)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8877654
|
| >2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST genomics, joint center for structural genomics, JCSG; 1.81A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-20 Score=203.23 Aligned_cols=207 Identities=16% Similarity=0.183 Sum_probs=156.2
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHH---HcCCCC---CHH-----hHh--hhcCCCHHHHHHHHHh----hcCCCC
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFA---EMGVEV---TVE-----DFL--PFMGTGEANFLGGVAS----VKGVKG 140 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~---~~g~~~---~~~-----~~~--~~~~~~~~~~~~~~~~----~~~~~~ 140 (1089)
++|+|+||+||||+|+...+..++.++++ ++|+.. ... .+. ...+.+...+...+.. ..+..
T Consensus 12 ~~k~iifDlDGTL~d~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~- 90 (251)
T 2pke_A 12 AIQLVGFDGDDTLWKSEDYYRTAEADFEAILSGYLDLGDSRMQQHLLAVERRNLKIFGYGAKGMTLSMIETAIELTEAR- 90 (251)
T ss_dssp SCCEEEECCBTTTBCCHHHHHHHHHHHHHHHTTTCCC-----CTTHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHTTTC-
T ss_pred ceeEEEEeCCCCCccCcHhHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhhhhhhccCcchHHHHHHHHHHHHhcCCC-
Confidence 58999999999999999999888888775 566654 111 111 2456666655544332 22222
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccC
Q 001380 141 FDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFEN 220 (1089)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~ 220 (1089)
........+.+.+.+.+... ..++||+.++|+.|+ +|++++|+||+....++..++.+++. .+|+.++++
T Consensus 91 -~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~l~-~~~~~~i~t~~~~~~~~~~l~~~~l~-~~f~~i~~~----- 160 (251)
T 2pke_A 91 -IEARDIQRIVEIGRATLQHP--VEVIAGVREAVAAIA-ADYAVVLITKGDLFHQEQKIEQSGLS-DLFPRIEVV----- 160 (251)
T ss_dssp -CCHHHHHHHHHHHHHHHTCC--CCBCTTHHHHHHHHH-TTSEEEEEEESCHHHHHHHHHHHSGG-GTCCCEEEE-----
T ss_pred -CChHHHHHHHHHHHHHHhcc--CCcCccHHHHHHHHH-CCCEEEEEeCCCHHHHHHHHHHcCcH-HhCceeeee-----
Confidence 22344555555565554433 378999999999999 89999999999999999999999996 899988874
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEcCCh-hhHHHHHHcCCeEEEEcCCCCH-----HHHhhcCCcE-EecCcccCCHHH
Q 001380 221 LKPAPDIFLSASKILNVPTSECIVIEDAL-AGVQAAKAAQMRCIAVTTTLSE-----ERLKEASPSL-IRKEIGSVSLND 293 (1089)
Q Consensus 221 ~KP~~~~~~~~l~~lgv~p~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~~~-----~~l~~~~~d~-vi~dl~el~i~~ 293 (1089)
.||++++|..+++++|+++++|++|||+. +|+.+|+++|+.+++|.+|... +.+....|++ ++.++.++ .+
T Consensus 161 ~kp~~~~~~~~~~~l~~~~~~~i~iGD~~~~Di~~a~~aG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~el--~~ 238 (251)
T 2pke_A 161 SEKDPQTYARVLSEFDLPAERFVMIGNSLRSDVEPVLAIGGWGIYTPYAVTWAHEQDHGVAADEPRLREVPDPSGW--PA 238 (251)
T ss_dssp SCCSHHHHHHHHHHHTCCGGGEEEEESCCCCCCHHHHHTTCEEEECCCC-------------CCTTEEECSSGGGH--HH
T ss_pred CCCCHHHHHHHHHHhCcCchhEEEECCCchhhHHHHHHCCCEEEEECCCCccccccccccccCCCCeeeeCCHHHH--HH
Confidence 58999999999999999999999999999 9999999999999999887531 2244568998 99999998 55
Q ss_pred HHhc
Q 001380 294 ILTG 297 (1089)
Q Consensus 294 ll~~ 297 (1089)
+|..
T Consensus 239 ~l~~ 242 (251)
T 2pke_A 239 AVRA 242 (251)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
|
| >2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=3e-21 Score=199.42 Aligned_cols=143 Identities=13% Similarity=0.174 Sum_probs=120.6
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCCh--
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNE-- 500 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~-- 500 (1089)
...+|+.+|+|++. +++|+++++ ++++||++||+||++||++|+.++|.|++++++|+++++.+|+|+++.|..+
T Consensus 22 ~~~~g~~~p~f~l~--~~~G~~v~l-~~~~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~ 98 (185)
T 2gs3_A 22 SMRCARSMHEFSAK--DIDGHMVNL-DKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEP 98 (185)
T ss_dssp GGGGCCCGGGCEEE--BTTSCEEEG-GGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCC
T ss_pred hccCCCCcCCceeE--cCCCCEeeH-HHcCCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCCC
Confidence 45689999999964 569999999 8999999999999999999999999999999999988999999998654322
Q ss_pred hcHHHHHHHHHHcCCccceee--cCChh----HHHHh-------CC-----CceeEEEEECCCCcEEEEecCCCchhhHH
Q 001380 501 KDLEAIRNAVLRYGISHPVVN--DGDMN----LWREL-------GV-----NSWPTFAVVGPNGKLLAQLAGEGHRKDLD 562 (1089)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~v~~--d~~~~----l~~~~-------~v-----~~~Pt~~lid~~G~i~~~~~G~~~~~~l~ 562 (1089)
++.+.+++++++++++||++. |.++. +++.+ ++ ..+|++||||++|++++++.|..+.+++.
T Consensus 99 ~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~ 178 (185)
T 2gs3_A 99 GSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIE 178 (185)
T ss_dssp SCHHHHHHHHHHTTCCSEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEECTTSCGGGGG
T ss_pred CCHHHHHHHHHHcCCCCeeeeeeccCChhhhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEeeCCCCCHHHHH
Confidence 468899999999999999986 44443 33322 43 44799999999999999999988888888
Q ss_pred HHHHHH
Q 001380 563 DLVEAA 568 (1089)
Q Consensus 563 ~~l~~~ 568 (1089)
+.|+++
T Consensus 179 ~~i~~l 184 (185)
T 2gs3_A 179 KDLPHY 184 (185)
T ss_dssp GGHHHH
T ss_pred HHHHHh
Confidence 777765
|
| >2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-20 Score=195.31 Aligned_cols=145 Identities=14% Similarity=0.154 Sum_probs=127.3
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCC--Ch
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFD--NE 500 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~--~~ 500 (1089)
...+|+++|+|++. +.+|+.+++ ++++||++||+||++||++|+.++|.|++++++|+++ +.+|+|+++.+. .+
T Consensus 6 ~~~~g~~~p~f~l~--~~~G~~~~l-~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~-~~~v~v~~d~~~~~~~ 81 (188)
T 2cvb_A 6 ELPLESPLIDAELP--DPRGGRYRL-SQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK-VAFVGINANDYEKYPE 81 (188)
T ss_dssp CCCTTCBCCCCEEE--CTTSCEEEG-GGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT-EEEEEEECCCTTTCGG
T ss_pred cCCCCCCCCCceee--cCCCCEEeH-HHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcC-eEEEEEEcCccccccc
Confidence 45789999999964 569999999 8999999999999999999999999999999999988 999999874321 13
Q ss_pred hcHHHHHHHHHHcCCccceeecCChhHHHHhCCCceeEEEEECCCCcEEEEe--------cCCCchhhHHHHHHHHHHH
Q 001380 501 KDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQL--------AGEGHRKDLDDLVEAALLF 571 (1089)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~--------~G~~~~~~l~~~l~~~l~~ 571 (1089)
++.+.+++|+++++++|+++.|.+.++++.|++.++|++||||++|+++++. .|..+.+++.+.|+.+++.
T Consensus 82 d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~~ 160 (188)
T 2cvb_A 82 DAPEKMAAFAEEHGIFFPYLLDETQEVAKAYRALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRG 160 (188)
T ss_dssp GSHHHHHHHHHHHTCCSCEEECSSSHHHHHTTCCEESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCCCeEEEECCCCcEEEEEecCCccccccccCHHHHHHHHHHHHcC
Confidence 7889999999999999999999999999999999999999999999999881 2333678888888887753
|
| >2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.5e-21 Score=199.45 Aligned_cols=147 Identities=13% Similarity=0.138 Sum_probs=120.3
Q ss_pred CCCCCCCCCccccCCCC-CceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCC--hh
Q 001380 425 KTTPIVPEFPAKLDWLN-TAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDN--EK 501 (1089)
Q Consensus 425 ~~g~~~P~f~~~~~~~~-g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~--~~ 501 (1089)
.....+|+|++ .+++ |+.++| ++++||+|||+|||+||++| .++|.|++++++|+++++.||+|+++.|.. .+
T Consensus 12 ~~~~~~pdF~l--~d~~~G~~v~L-s~~kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d~f~~~e~~ 87 (207)
T 2r37_A 12 GISGTIYEYGA--LTIDGEEYIPF-KQYAGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPG 87 (207)
T ss_dssp ---CCGGGCEE--EBTTSSCEEEG-GGGTTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECCCBTTCCCS
T ss_pred cccCccCCeEe--eeCCCCCEEcH-HHhCCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECcccCcCCCC
Confidence 45668999995 4569 999999 99999999999999999999 799999999999998899999999876633 34
Q ss_pred cHHHHHHHHH------HcCCccceeecCC--h----hHHHHh-----------C--------------CCceeEEEEECC
Q 001380 502 DLEAIRNAVL------RYGISHPVVNDGD--M----NLWREL-----------G--------------VNSWPTFAVVGP 544 (1089)
Q Consensus 502 ~~~~~~~~~~------~~~~~~~v~~d~~--~----~l~~~~-----------~--------------v~~~Pt~~lid~ 544 (1089)
+.+++++|++ +++++||++.|.+ + .++..+ + |...|++||||+
T Consensus 88 ~~~~i~~f~~~~~~~~~~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttflID~ 167 (207)
T 2r37_A 88 ENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGP 167 (207)
T ss_dssp CHHHHHHHHHHTSSCTTCCCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEEEECT
T ss_pred CHHHHHHHHHhcchhhccCccceeeeEeccCCcccchHHHHHHhhCccccccccccccccccccccCcccccceEEEECC
Confidence 6789999999 9999999986532 2 222211 1 233389999999
Q ss_pred CCcEEEEecCCCchhhHHHHHHHHHHHhccc
Q 001380 545 NGKLLAQLAGEGHRKDLDDLVEAALLFYGKK 575 (1089)
Q Consensus 545 ~G~i~~~~~G~~~~~~l~~~l~~~l~~~~~~ 575 (1089)
+|+|+.++.|....+.+++.|+.++++.+..
T Consensus 168 ~G~i~~~~~g~~~~~~l~~~I~~ll~~~~~~ 198 (207)
T 2r37_A 168 DGIPIMRWHHRTTVSNVKMDILSYMRRQAAL 198 (207)
T ss_dssp TSCEEEEECTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCHHHHHHHHHHHHhhcccc
Confidence 9999999999888999999999998876544
|
| >3vay_A HAD-superfamily hydrolase; rossmann fold, haloacid dehalogenase; 1.98A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.4e-21 Score=204.32 Aligned_cols=206 Identities=17% Similarity=0.208 Sum_probs=149.6
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHH---cCCCCC---HHhHh---hhc-------CCCH----HHHHHHHHhhcC
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAE---MGVEVT---VEDFL---PFM-------GTGE----ANFLGGVASVKG 137 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~---~g~~~~---~~~~~---~~~-------~~~~----~~~~~~~~~~~~ 137 (1089)
|+|+|+||+||||+++...+..+...+++. .+.... ...+. ..+ .... ......+....+
T Consensus 1 mik~i~fDlDGTL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (230)
T 3vay_A 1 MIKLVTFDLDDTLWDTAPAIVGAEAALRDWLAEQAPKLGPVPVEHLWEIRSRLLDEDPSFKHRISALRRRVLFHALEDAG 80 (230)
T ss_dssp CCCEEEECCBTTTBCSHHHHHHHHHHHHHHHHHHCTTTCSCCHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHTTT
T ss_pred CeeEEEecCcccCcCCchHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHhC
Confidence 479999999999999988777666555444 333211 11111 000 0011 112222333334
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCC
Q 001380 138 VKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADA 217 (1089)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~ 217 (1089)
+...........+.+.+...... ..++||+.++|+.|+++ ++++|+||.... ++.+|+. .+|+.++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~l~~~-~~~~i~t~~~~~-----l~~~~l~-~~f~~~~~~~~ 150 (230)
T 3vay_A 81 YDSDEAQQLADESFEVFLHGRHQ---VQIFPEVQPTLEILAKT-FTLGVITNGNAD-----VRRLGLA-DYFAFALCAED 150 (230)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTC---CCBCTTHHHHHHHHHTT-SEEEEEESSCCC-----GGGSTTG-GGCSEEEEHHH
T ss_pred CChhhhHHHHHHHHHHHHHhhcc---CccCcCHHHHHHHHHhC-CeEEEEECCchh-----hhhcCcH-HHeeeeEEccc
Confidence 33212223444444444444332 37899999999999999 999999998765 7888996 99999999999
Q ss_pred ccCCCCCHHHHHHHHHHcCCCCCcEEEEcCCh-hhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHh
Q 001380 218 FENLKPAPDIFLSASKILNVPTSECIVIEDAL-AGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILT 296 (1089)
Q Consensus 218 ~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~ 296 (1089)
.+..||++++|+.+++++|++|++|+||||+. +|+.+|+++|+.+++|.++....+. ...|++++.++.+| .++|.
T Consensus 151 ~~~~kp~~~~~~~~~~~~~~~~~~~~~vGD~~~~Di~~a~~aG~~~~~v~~~~~~~~~-~~~~~~~~~~l~el--~~~l~ 227 (230)
T 3vay_A 151 LGIGKPDPAPFLEALRRAKVDASAAVHVGDHPSDDIAGAQQAGMRAIWYNPQGKAWDA-DRLPDAEIHNLSQL--PEVLA 227 (230)
T ss_dssp HTCCTTSHHHHHHHHHHHTCCGGGEEEEESCTTTTHHHHHHTTCEEEEECTTCCCCCS-SSCCSEEESSGGGH--HHHHH
T ss_pred cCCCCcCHHHHHHHHHHhCCCchheEEEeCChHHHHHHHHHCCCEEEEEcCCCCCCcc-cCCCCeeECCHHHH--HHHHH
Confidence 99999999999999999999999999999998 9999999999999999998643222 66899999999998 66654
|
| >3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-21 Score=202.12 Aligned_cols=145 Identities=17% Similarity=0.189 Sum_probs=121.8
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCC--h
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDN--E 500 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~--~ 500 (1089)
....++++|+|++ .+++|+++++ ++++||+|||+||++||++|+.++|.|++++++|+++++.||+|+++.+.. .
T Consensus 19 ~~~~~~~~p~f~l--~d~~G~~~~l-~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~e~ 95 (187)
T 3dwv_A 19 KMSAASSIFDFEV--LDADHKPYNL-VQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEP 95 (187)
T ss_dssp -CTTCCSGGGSCC--BBTTSCBCCG-GGGTTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSCSS
T ss_pred hhcCCCccCCeEE--EcCCCCEeeH-HHhCCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCCCC
Confidence 4567889999995 4669999999 899999999999999999999999999999999998899999999865422 3
Q ss_pred hcHHHHHHHHH-HcCCccceee--cCChhHH------------HHhCCCcee---EEEEECCCCcEEEEecCCCchhhHH
Q 001380 501 KDLEAIRNAVL-RYGISHPVVN--DGDMNLW------------RELGVNSWP---TFAVVGPNGKLLAQLAGEGHRKDLD 562 (1089)
Q Consensus 501 ~~~~~~~~~~~-~~~~~~~v~~--d~~~~l~------------~~~~v~~~P---t~~lid~~G~i~~~~~G~~~~~~l~ 562 (1089)
++.+.+++|++ +++++||++. |.++..+ ..|++..+| ++||||++|+|++++.|..+.+.+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~~~g~~~~~~l~ 175 (187)
T 3dwv_A 96 GNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFSPGASVKDIE 175 (187)
T ss_dssp SBTTHHHHSCCBCCCCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEEECTTCCHHHHH
T ss_pred CCHHHHHHHHHhccCCCCceeeccccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEEECCCCCHHHHH
Confidence 57889999999 5699999986 4444332 234666778 9999999999999999999999999
Q ss_pred HHHHHHHH
Q 001380 563 DLVEAALL 570 (1089)
Q Consensus 563 ~~l~~~l~ 570 (1089)
+.|+++++
T Consensus 176 ~~i~~lL~ 183 (187)
T 3dwv_A 176 EKLIPLLG 183 (187)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHh
Confidence 99888775
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=188.07 Aligned_cols=141 Identities=21% Similarity=0.326 Sum_probs=127.4
Q ss_pred CCCCCCCC-CCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhc
Q 001380 424 RKTTPIVP-EFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKD 502 (1089)
Q Consensus 424 ~~~g~~~P-~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~ 502 (1089)
..+|+++| +|++. +.+|+.+++ ++++||++||+||++||++|+.++|.|++++++|++.++.+++|++ +++
T Consensus 3 l~~G~~~p~~f~l~--~~~g~~~~l-~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~-----d~~ 74 (152)
T 2lja_A 3 LRSGNPSAASFSYP--DINGKTVSL-ADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSC-----DKN 74 (152)
T ss_dssp TTTTCCCSSSCEEE--ETTTEEEES-TTTTTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEEC-----CSC
T ss_pred cccCCCCCcccEee--cCCCCEeeH-HHcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEc-----cCc
Confidence 56899999 99954 569999999 8999999999999999999999999999999999988899999976 345
Q ss_pred HHHHHHHHHHcCCcc-ceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHHh
Q 001380 503 LEAIRNAVLRYGISH-PVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFY 572 (1089)
Q Consensus 503 ~~~~~~~~~~~~~~~-~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~~ 572 (1089)
.+.++++++++++++ +++.|.+.++++.|+|.++|+++|||++|+++.++.|..+.+.+.++|+.+++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~ 145 (152)
T 2lja_A 75 KKAWENMVTKDQLKGIQLHMGTDRTFMDAYLINGIPRFILLDRDGKIISANMTRPSDPKTAEKFNELLGLE 145 (152)
T ss_dssp HHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCSSCCEEEECTTSCEEESSCCCTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhcCCCCceeecCcchhHHHHcCcCCCCEEEEECCCCeEEEccCCCCCHHHHHHHHHHHhccc
Confidence 688999999999997 6778888999999999999999999999999999999888899999998877643
|
| >1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-20 Score=200.53 Aligned_cols=124 Identities=20% Similarity=0.261 Sum_probs=113.7
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEE
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIV 244 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~ 244 (1089)
.++||+.++|+.|+++|++++|+||.....++..++.+|+. .+|+.++++++....||++.+|+.+++++|++|++|+|
T Consensus 95 ~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~-~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~ 173 (232)
T 1zrn_A 95 APFSEVPDSLRELKRRGLKLAILSNGSPQSIDAVVSHAGLR-DGFDHLLSVDPVQVYKPDNRVYELAEQALGLDRSAILF 173 (232)
T ss_dssp EECTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCG-GGCSEEEESGGGTCCTTSHHHHHHHHHHHTSCGGGEEE
T ss_pred CCCccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhcChH-hhhheEEEecccCCCCCCHHHHHHHHHHcCCCcccEEE
Confidence 68999999999999999999999999999999999999996 99999999999999999999999999999999999999
Q ss_pred EcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccC
Q 001380 245 IEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 245 VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el 289 (1089)
|||+.+|+.+|+++|+.++++.++....+.....|++++.++.++
T Consensus 174 iGD~~~Di~~a~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~el 218 (232)
T 1zrn_A 174 VASNAWDATGARYFGFPTCWINRTGNVFEEMGQTPDWEVTSLRAV 218 (232)
T ss_dssp EESCHHHHHHHHHHTCCEEEECTTCCCCCSSSCCCSEEESSHHHH
T ss_pred EeCCHHHHHHHHHcCCEEEEEcCCCCCccccCCCCCEEECCHHHH
Confidence 999999999999999999999987533222345799999998877
|
| >3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.9e-21 Score=194.99 Aligned_cols=135 Identities=14% Similarity=0.229 Sum_probs=117.7
Q ss_pred cCCCCCC----CCCCccccCCCCCceeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCC
Q 001380 423 NRKTTPI----VPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKF 497 (1089)
Q Consensus 423 ~~~~g~~----~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~ 497 (1089)
..++|+. +|+|++. +.+|++++| ++++||++||+|| ++||++|+.++|.|++++++|+++++.||+|+.
T Consensus 20 ~l~~Gd~ig~~aP~f~l~--~~~G~~v~l-~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~--- 93 (179)
T 3ixr_A 20 HMNIGDTLNHSLLNHPLM--LSGSTCKTL-SDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSR--- 93 (179)
T ss_dssp SSCTTCBCCHHHHHCCEE--EGGGEEECG-GGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEES---
T ss_pred ccCcCcccCCcCCCeeEE--CCCCCEEeH-HHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcC---
Confidence 4567777 9999965 559999999 9999999999999 999999999999999999999999999999985
Q ss_pred CChhcHHHHHHHHHHcCCccceeecCChhHHHHhCCCc------------eeEEEEECCCCcEEEEecCCCchhhHHHHH
Q 001380 498 DNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNS------------WPTFAVVGPNGKLLAQLAGEGHRKDLDDLV 565 (1089)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~------------~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l 565 (1089)
++.+.+++|+++++++||++.|.+.++++.|++.. .|++||||++|+|++.+.+......+++++
T Consensus 94 ---D~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~il 170 (179)
T 3ixr_A 94 ---DSVKSHDSFCAKQGFTFPLVSDSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIVEAWRQVKVPGHAEEVL 170 (179)
T ss_dssp ---CCHHHHHHHHHHHTCCSCEEECTTCHHHHHTTCEEEECCC--CEEEECCEEEEECTTSBEEEEECSCCSTTHHHHHH
T ss_pred ---CCHHHHHHHHHHcCCceEEEECCchHHHHHcCCcccccccCcccCCcceEEEEECCCCEEEEEEcCCCCCCCHHHHH
Confidence 46788999999999999999999999999999964 588999999999999986655444444444
Q ss_pred H
Q 001380 566 E 566 (1089)
Q Consensus 566 ~ 566 (1089)
+
T Consensus 171 ~ 171 (179)
T 3ixr_A 171 N 171 (179)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.4e-21 Score=196.34 Aligned_cols=141 Identities=24% Similarity=0.345 Sum_probs=109.1
Q ss_pred CCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCC--hhcH
Q 001380 426 TTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDN--EKDL 503 (1089)
Q Consensus 426 ~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~--~~~~ 503 (1089)
-+..+|+|++ .+++|+++++ ++++||++||+||++||++|+ ++|.|++++++|+++++.||+|+++.+.. .++.
T Consensus 8 ~~~~~~~f~l--~d~~G~~~~l-~~~~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~ 83 (171)
T 3cmi_A 8 HMSEFYKLAP--VDKKGQPFPF-DQLKGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSD 83 (171)
T ss_dssp --CGGGGCCC--BBTTSCBCCG-GGGTTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC-------
T ss_pred chhheeeeEE--EcCCCCEecH-HHcCCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCH
Confidence 4678999995 4569999999 899999999999999999999 99999999999998889999998854432 2567
Q ss_pred HHHHHHH-HHcCCccceeecCC--hh----HH-----HHhCCCcee------EEEEECCCCcEEEEecCCCchhhHHHHH
Q 001380 504 EAIRNAV-LRYGISHPVVNDGD--MN----LW-----RELGVNSWP------TFAVVGPNGKLLAQLAGEGHRKDLDDLV 565 (1089)
Q Consensus 504 ~~~~~~~-~~~~~~~~v~~d~~--~~----l~-----~~~~v~~~P------t~~lid~~G~i~~~~~G~~~~~~l~~~l 565 (1089)
+.+++|+ ++++++||++.|.+ +. ++ +.|++.++| ++||||++|++++++.|..+.+.+.+.|
T Consensus 84 ~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i 163 (171)
T 3cmi_A 84 EEIAQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETI 163 (171)
T ss_dssp -----------CCCSCBBCCCBSSSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEEECTTSCGGGGHHHH
T ss_pred HHHHHHHHhccCCCceEEeeccCCCccchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEEeCCCCCHHHHHHHH
Confidence 8899999 99999999998643 22 11 358999999 9999999999999999988999999999
Q ss_pred HHHHH
Q 001380 566 EAALL 570 (1089)
Q Consensus 566 ~~~l~ 570 (1089)
+++++
T Consensus 164 ~~ll~ 168 (171)
T 3cmi_A 164 EELLK 168 (171)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 98875
|
| >3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the 6-AU sensitivity of transcription elongation II; 1.70A {Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-20 Score=205.81 Aligned_cols=210 Identities=15% Similarity=0.173 Sum_probs=150.5
Q ss_pred CCceEEEEecCCcccCCchHHHHHHHHHHHHc---CCCCCHHhHhhhcCCCHH---HHHHHHHhhcCCCCCCHHHHHHHH
Q 001380 77 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEM---GVEVTVEDFLPFMGTGEA---NFLGGVASVKGVKGFDSEAAKKRF 150 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~---g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 150 (1089)
.++|+|+||+||||+++...+..++.++++++ ++................ .....+....+. ... .+
T Consensus 55 ~~~k~i~FDlDGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~----~~ 127 (282)
T 3nuq_A 55 PNLKVFFFDIDNCLYKSSTRIHDLMQQSILRFFQTHLKLSPEDAHVLNNSYYKEYGLAIRGLVMFHKV---NAL----EY 127 (282)
T ss_dssp CCCCEEEECCTTTTSCCCHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTHHHHHHHHHTTSS---CHH----HH
T ss_pred CCCCEEEEecCCCcccCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHcCC---CHH----HH
Confidence 46899999999999999887777777776663 333443332221110000 111222222222 222 22
Q ss_pred HHHHHHHhcCCCCCCCCccHHHHHHHHHhCCC--eEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCc----cCCCCC
Q 001380 151 FEIYLDKYAKPNSGIGFPGALELINQCKSKGL--KVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAF----ENLKPA 224 (1089)
Q Consensus 151 ~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi--~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~----~~~KP~ 224 (1089)
.+.+...........++||+.++|+.|+++|+ +++|+||+....++..++.+|+. .+|+.++++++. ...||+
T Consensus 128 ~~~~~~~~~~~~~~~~~p~~~~~L~~L~~~g~~~~l~i~Tn~~~~~~~~~l~~~gl~-~~fd~v~~~~~~~~~~~~~Kp~ 206 (282)
T 3nuq_A 128 NRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNHAIRCLRLLGIA-DLFDGLTYCDYSRTDTLVCKPH 206 (282)
T ss_dssp HHHHTTTSCGGGTCCCCHHHHHHHHHHHHSSSCSEEEEECSSCHHHHHHHHHHHTCT-TSCSEEECCCCSSCSSCCCTTS
T ss_pred HHHHhhhhhhhhccCcChhHHHHHHHHHhCCCCceEEEEECCChHHHHHHHHhCCcc-cccceEEEeccCCCcccCCCcC
Confidence 22222211111124789999999999999999 99999999999999999999996 999999988765 457999
Q ss_pred HHHHHHHHHHcCCCC-CcEEEEcCChhhHHHHHHcCC-eEEEEcCCCCHHHH-hhcCCcEEecCcccCCHHHHHh
Q 001380 225 PDIFLSASKILNVPT-SECIVIEDALAGVQAAKAAQM-RCIAVTTTLSEERL-KEASPSLIRKEIGSVSLNDILT 296 (1089)
Q Consensus 225 ~~~~~~~l~~lgv~p-~~~v~VGD~~~Di~aA~~aG~-~~i~V~~g~~~~~l-~~~~~d~vi~dl~el~i~~ll~ 296 (1089)
+++|+.+++++|+++ ++|+||||+.+|+.+|+++|+ .++++..+...+.+ ....+++++.++.+| .++|.
T Consensus 207 ~~~~~~~~~~lgi~~~~~~i~vGD~~~Di~~a~~aG~~~~~~~~~~~~~~~~~~~~~ad~vi~sl~el--~~~l~ 279 (282)
T 3nuq_A 207 VKAFEKAMKESGLARYENAYFIDDSGKNIETGIKLGMKTCIHLVENEVNEILGQTPEGAIVISDILEL--PHVVS 279 (282)
T ss_dssp HHHHHHHHHHHTCCCGGGEEEEESCHHHHHHHHHHTCSEEEEECSCCC----CCCCTTCEEESSGGGG--GGTSG
T ss_pred HHHHHHHHHHcCCCCcccEEEEcCCHHHHHHHHHCCCeEEEEEcCCccccccccCCCCCEEeCCHHHH--HHHhh
Confidence 999999999999999 999999999999999999999 67777776543332 345789999999998 55543
|
| >2g80_A Protein UTR4; YEL038W, UTR4 protein (unknown transcript 4 protein), struct genomics, PSI, protein structure initiative; 2.28A {Saccharomyces cerevisiae} SCOP: c.108.1.22 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-20 Score=201.40 Aligned_cols=203 Identities=12% Similarity=0.115 Sum_probs=141.2
Q ss_pred CCceEEEEecCCcccCCch-------HHHHHHHHHHHHcCCCCCHHh-HhhhcCCCHHHHHHHHHhhcCCCCCC--HHHH
Q 001380 77 GKVSAVLFDMDGVLCNSEE-------PSRRAAVDVFAEMGVEVTVED-FLPFMGTGEANFLGGVASVKGVKGFD--SEAA 146 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~-------~~~~a~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 146 (1089)
+++++|+||+||||+|++. .....+.+.+++++......+ +..+.+.+...+...+....+..... ....
T Consensus 29 ~~ikaviFDlDGTLvDs~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~ 108 (253)
T 2g80_A 29 DNYSTYLLDIEGTVCPISFVKETLFPYFTNKVPQLVQQDTRDSPVSNILSQFHIDNKEQLQAHILELVAKDVKDPILKQL 108 (253)
T ss_dssp CCCSEEEECCBTTTBCTHHHHHTHHHHHHHHHHHHHHSCCTTSHHHHHHHTTCCCCHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred CCCcEEEEcCCCCcccccccchhhHHHHHHHHHHHHHHhcCcHHHHHHHHHhhhccHHHHHHHHHHHHhcccchHHHHHH
Confidence 3589999999999999874 334455566666665543232 33344555666665555443321111 1111
Q ss_pred HH-HHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHC--C---------CCCCCccEEEE
Q 001380 147 KK-RFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAA--G---------LPVSMFDAIVS 214 (1089)
Q Consensus 147 ~~-~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~--g---------l~~~~fd~i~~ 214 (1089)
.. .+.+.|.. . .....++||+.++|+. |++++|+||+.+..++..++.+ | +. .+|+.++.
T Consensus 109 ~~~~~~~~~~~-~--~~~~~~~pgv~e~L~~----g~~l~i~Tn~~~~~~~~~l~~~~~g~~~~~~~l~l~-~~~~~~f~ 180 (253)
T 2g80_A 109 QGYVWAHGYES-G--QIKAPVYADAIDFIKR----KKRVFIYSSGSVKAQKLLFGYVQDPNAPAHDSLDLN-SYIDGYFD 180 (253)
T ss_dssp HHHHHHHHHHT-T--SCCBCCCHHHHHHHHH----CSCEEEECSSCHHHHHHHHHSBCCTTCTTSCCBCCG-GGCCEEEC
T ss_pred HHHHHHHHHHh-C--cccCCCCCCHHHHHHc----CCEEEEEeCCCHHHHHHHHHhhcccccccccccchH-hhcceEEe
Confidence 11 12222221 1 1134789999999988 8999999999999999999977 4 64 67787776
Q ss_pred cCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccC
Q 001380 215 ADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 215 ~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el 289 (1089)
+ .+...||+|++|..+++++|++|++|+||||+.+|+++|+++||++++|.+.... .+....+++++.++.+|
T Consensus 181 ~-~~~g~KP~p~~~~~a~~~lg~~p~~~l~vgDs~~di~aA~~aG~~~i~v~~~~~~-~~~~~~~~~~i~~l~eL 253 (253)
T 2g80_A 181 I-NTSGKKTETQSYANILRDIGAKASEVLFLSDNPLELDAAAGVGIATGLASRPGNA-PVPDGQKYQVYKNFETL 253 (253)
T ss_dssp H-HHHCCTTCHHHHHHHHHHHTCCGGGEEEEESCHHHHHHHHTTTCEEEEECCTTSC-CCCSSCCSCEESCSTTC
T ss_pred e-eccCCCCCHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHcCCEEEEEcCCCCC-CcccccCCCccCChhhC
Confidence 5 3313699999999999999999999999999999999999999999999873221 11122478889988775
|
| >2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.4e-21 Score=197.99 Aligned_cols=147 Identities=16% Similarity=0.196 Sum_probs=129.8
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCC-EEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCC--
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGK-VVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDN-- 499 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk-~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~-- 499 (1089)
...+|+.+|+|++.. +++|+.+++ ++++|| ++||+||++||++|+.++|.|++++++|+++++.+|+|+++.+..
T Consensus 17 ~~~~g~~~p~f~l~~-~~~G~~~~l-~~~~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~ 94 (196)
T 2ywi_A 17 MFPLGKQAPPFALTN-VIDGNVVRL-EDVKSDAATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYP 94 (196)
T ss_dssp CCCTTCBCCCCEEEE-TTTCCEEEH-HHHCCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCG
T ss_pred CCCcCCcCCceeeee-cCCCCEEeH-HHhCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccc
Confidence 356899999999540 569999999 899998 599999999999999999999999999998889999998753221
Q ss_pred hhcHHHHHHHHHHcCCccceeecCChhHHHHhCCCceeEEEEECCCCcEEEE---------ecCCCchhhHHHHHHHHHH
Q 001380 500 EKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQ---------LAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~---------~~G~~~~~~l~~~l~~~l~ 570 (1089)
+++.+.+++|+++++++|+++.|.+.++++.|+|.++|++||||++|+++++ +.|..+.+++.+.|+.+++
T Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~ 174 (196)
T 2ywi_A 95 EDSPENMKKVAEELGYPFPYLYDETQEVAKAYDAACTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLE 174 (196)
T ss_dssp GGSHHHHHHHHHHHTCCSCEEECSSCHHHHHHTCCEESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCCceEEECCchHHHHHhCCCCCCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHHHc
Confidence 3788999999999999999999999999999999999999999999999998 3566688899999988876
Q ss_pred H
Q 001380 571 F 571 (1089)
Q Consensus 571 ~ 571 (1089)
.
T Consensus 175 ~ 175 (196)
T 2ywi_A 175 G 175 (196)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A | Back alignment and structure |
|---|
Probab=99.84 E-value=9.9e-21 Score=191.23 Aligned_cols=139 Identities=15% Similarity=0.194 Sum_probs=123.3
Q ss_pred CCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcc-hhhhhhhHHHHHHHcCC----CCEEEEEEeCCCCCChhcH
Q 001380 429 IVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCIN-CMHVLPDLEFLEKKYKD----MPFTVVGVHSAKFDNEKDL 503 (1089)
Q Consensus 429 ~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~-C~~~~p~l~~l~~~~~~----~~v~vi~v~~~~~~~~~~~ 503 (1089)
.+|+|++. +.+|+++++ ++++||++||+||++||++ |+.++|.|++++++|++ .++.+|+|+++ ...+++
T Consensus 2 ~ap~f~l~--~~~G~~~~l-~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d--~~~d~~ 76 (164)
T 2ggt_A 2 LGGPFSLT--THTGERKTD-KDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISID--PERDTK 76 (164)
T ss_dssp CCCCCEEE--ETTSCEEEG-GGGTTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESC--TTTCCH
T ss_pred CCCCeEEE--eCCCCEEeH-HHcCCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeC--CCCCCH
Confidence 57999964 559999999 8999999999999999998 99999999999999975 48999999874 223568
Q ss_pred HHHHHHHHHcCCccceee---cCChhHHHHhCCCcee---------------EEEEECCCCcEEEEecCCCchhhHHHHH
Q 001380 504 EAIRNAVLRYGISHPVVN---DGDMNLWRELGVNSWP---------------TFAVVGPNGKLLAQLAGEGHRKDLDDLV 565 (1089)
Q Consensus 504 ~~~~~~~~~~~~~~~v~~---d~~~~l~~~~~v~~~P---------------t~~lid~~G~i~~~~~G~~~~~~l~~~l 565 (1089)
+.+++|+++++++|+++. |...++++.|+|..+| ++||||++|+++.++.|..+.+++.+.|
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l 156 (164)
T 2ggt_A 77 EAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASI 156 (164)
T ss_dssp HHHHHHHHTTCSSCEEEECCHHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCeEEEeCCHHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHHHHHHH
Confidence 899999999999999884 4456799999999999 8999999999999999998999999999
Q ss_pred HHHHHHh
Q 001380 566 EAALLFY 572 (1089)
Q Consensus 566 ~~~l~~~ 572 (1089)
+++++.+
T Consensus 157 ~~ll~~~ 163 (164)
T 2ggt_A 157 ATHMRPY 163 (164)
T ss_dssp HHHHGGG
T ss_pred HHHHHhc
Confidence 9988765
|
| >2oda_A Hypothetical protein pspto_2114; haloacid dehalogenase, phosphonoacetaldehyde hydrolase, protein binding; HET: EPE; 1.90A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.2e-21 Score=197.61 Aligned_cols=124 Identities=19% Similarity=0.198 Sum_probs=107.7
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCC-CcEE
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPT-SECI 243 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p-~~~v 243 (1089)
.++||+.++|+.|+++|++++|+||.....+...+. .+|+.+++++++...||+|++|.++++++|+.+ ++|+
T Consensus 36 ~~~pg~~e~L~~L~~~g~~~~i~T~~~~~~~~~~~~------~~~d~v~~~~~~~~~KP~p~~~~~a~~~l~~~~~~~~v 109 (196)
T 2oda_A 36 QLTPGAQNALKALRDQGMPCAWIDELPEALSTPLAA------PVNDWMIAAPRPTAGWPQPDACWMALMALNVSQLEGCV 109 (196)
T ss_dssp SBCTTHHHHHHHHHHHTCCEEEECCSCHHHHHHHHT------TTTTTCEECCCCSSCTTSTHHHHHHHHHTTCSCSTTCE
T ss_pred CcCcCHHHHHHHHHHCCCEEEEEcCChHHHHHHhcC------ccCCEEEECCcCCCCCCChHHHHHHHHHcCCCCCccEE
Confidence 689999999999999999999999988877644332 357899999999999999999999999999975 8999
Q ss_pred EEcCChhhHHHHHHcCCeEEEEcCCCC------------------------HHHHhhcCCcEEecCcccCCHHHHHh
Q 001380 244 VIEDALAGVQAAKAAQMRCIAVTTTLS------------------------EERLKEASPSLIRKEIGSVSLNDILT 296 (1089)
Q Consensus 244 ~VGD~~~Di~aA~~aG~~~i~V~~g~~------------------------~~~l~~~~~d~vi~dl~el~i~~ll~ 296 (1089)
||||+.+||++|+++||.+|+|.+|.. .+++...+|+++++++.+| ..+|.
T Consensus 110 ~VGDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~d~vi~~~~eL--~~~l~ 184 (196)
T 2oda_A 110 LISGDPRLLQSGLNAGLWTIGLASCGPLCGLSPSQWQALNNAEREQRRAQATLKLYSLGVHSVIDHLGEL--ESCLA 184 (196)
T ss_dssp EEESCHHHHHHHHHHTCEEEEESSSSTTTCCCHHHHHHSCHHHHHHHHHHHHHHHHHTTCSEEESSGGGH--HHHHH
T ss_pred EEeCCHHHHHHHHHCCCEEEEEccCCccccccHHHhhhcchhhhhhhHHHHHHHHHHcCCCEEeCCHHHH--HHHHH
Confidence 999999999999999999999999753 2344567899999999998 55553
|
| >1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=189.17 Aligned_cols=134 Identities=15% Similarity=0.136 Sum_probs=118.9
Q ss_pred CCCCCCCCCCccccCCCCCceeecccccCCC-EEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChh
Q 001380 424 RKTTPIVPEFPAKLDWLNTAPLQFRRDLKGK-VVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEK 501 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk-~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~ 501 (1089)
..+|+++|+|++. +.+|+.+++ ++++|| ++||+|| ++||++|+.++|.|++++++|++.++.+|+|++ +
T Consensus 9 ~~~G~~~p~f~l~--~~~G~~~~l-~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~------d 79 (160)
T 1xvw_A 9 LNVGATAPDFTLR--DQNQQLVTL-RGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISV------G 79 (160)
T ss_dssp CCTTSBCCCCEEE--CTTSCEEEG-GGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEES------C
T ss_pred CCCCCCCCCeEeE--cCCCCEEeH-HHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeC------C
Confidence 5689999999964 559999999 899998 9999998 999999999999999999999988899999986 3
Q ss_pred cHHHHHHHHHHcCCccceeecC--ChhHHHHhCCC----cee--EEEEECCCCcEEEEecCCCchh-hHHHHHH
Q 001380 502 DLEAIRNAVLRYGISHPVVNDG--DMNLWRELGVN----SWP--TFAVVGPNGKLLAQLAGEGHRK-DLDDLVE 566 (1089)
Q Consensus 502 ~~~~~~~~~~~~~~~~~v~~d~--~~~l~~~~~v~----~~P--t~~lid~~G~i~~~~~G~~~~~-~l~~~l~ 566 (1089)
+.+.+++|+++++++|+++.|. +.++++.|++. ++| ++||||++|+|++++.|....+ .++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~~~~~p~~~~~lid~~G~i~~~~~g~~~~~~~~~~l~~ 153 (160)
T 1xvw_A 80 PPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTD 153 (160)
T ss_dssp CHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHH
T ss_pred CHHHHHHHHHhcCCCceEEecCCcChHHHHHcCCccccCCCeeeeEEEECCCCeEEEEEecCCCCCCCHHHHHH
Confidence 6788999999999999999995 89999999998 999 9999999999999998876443 4444443
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-20 Score=182.48 Aligned_cols=135 Identities=27% Similarity=0.417 Sum_probs=123.0
Q ss_pred CCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHH
Q 001380 429 IVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRN 508 (1089)
Q Consensus 429 ~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~ 508 (1089)
++|+|++. +.+|+.+++ ++++||++||+||++||++|+.++|.|+++++++++ ++.+++|+....+.+++.+.+++
T Consensus 1 ~~p~f~l~--~~~g~~~~l-~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~v~i~~~~~~~~~~~~~~~~ 76 (138)
T 4evm_A 1 EVADFELM--GVDGKTYRL-SDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGD-DYVVLTVVSPGHKGEQSEADFKN 76 (138)
T ss_dssp CCCCCEEE--BTTSCEEEG-GGGTTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTT-TEEEEEEECTTSTTCCCHHHHHH
T ss_pred CCCcceeE--CCCCCEEEH-HHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCC-CcEEEEEEcCCCCchhhHHHHHH
Confidence 47999964 559999999 899999999999999999999999999999999654 69999997766667889999999
Q ss_pred HHHHcCC-ccceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHH
Q 001380 509 AVLRYGI-SHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEA 567 (1089)
Q Consensus 509 ~~~~~~~-~~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~ 567 (1089)
+++++++ +|+++.|.+.++++.|++.++|++++||++|+++.++.|..+.+++.+.|++
T Consensus 77 ~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ 136 (138)
T 4evm_A 77 WYKGLDYKNLPVLVDPSGKLLETYGVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKE 136 (138)
T ss_dssp HHTTCCCTTCCEEECTTCHHHHHTTCCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHH
T ss_pred HHhhcCCCCeeEEECcchHHHHHcCcccCCeEEEECCCCcEEEeecCCCcHHHHHHHHHh
Confidence 9999999 8999999999999999999999999999999999999999888888877764
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-20 Score=188.45 Aligned_cols=137 Identities=22% Similarity=0.229 Sum_probs=117.4
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhc
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKD 502 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~ 502 (1089)
....|+.+|+|++. +.+|+.+++ ++++||++||+||++||++|+.++|.|++++++|+++++.+|+|++ ++.
T Consensus 8 ~~~~g~~~p~f~l~--~~~G~~~~l-~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~-----d~~ 79 (152)
T 2lrt_A 8 DKIKEASIIDIQLK--DLKGNTRSL-TDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISL-----DGD 79 (152)
T ss_dssp SSSCTTCSCCCCEE--BTTSCEECT-TTGGGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEC-----SCC
T ss_pred hhccCCCCCCeEEE--cCCCCEEeH-HHhCCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEc-----cCC
Confidence 34578999999964 569999999 8999999999999999999999999999999999988999999987 344
Q ss_pred HHHHHHHHHHcCCccceeecCChh---HHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHHh
Q 001380 503 LEAIRNAVLRYGISHPVVNDGDMN---LWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFY 572 (1089)
Q Consensus 503 ~~~~~~~~~~~~~~~~v~~d~~~~---l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~~ 572 (1089)
.+.++++.++ ++|+++.|.++. +++.|++.++|++||||++|++++++.|.. ++++.+..+++.+
T Consensus 80 ~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~---~~e~~~~~~~~~~ 147 (152)
T 2lrt_A 80 EHFWKTSADN--LPWVCVRDANGAYSSYISLYNVTNLPSVFLVNRNNELSARGENIK---DLDEAIKKLLEGH 147 (152)
T ss_dssp HHHHHHHHTT--CSSEEEECSSGGGCHHHHHHTCCSCSEEEEEETTTEEEEETTTCS---CHHHHHHHHHGGG
T ss_pred HHHHHHHHhC--CCceEEECCCCcchHHHHHcCcccCceEEEECCCCeEEEecCCHH---HHHHHHHHHHhcc
Confidence 5677887754 789999999886 999999999999999999999999988764 4555566655543
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-20 Score=194.34 Aligned_cols=142 Identities=23% Similarity=0.406 Sum_probs=126.0
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhc
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKD 502 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~ 502 (1089)
...+|.++|+|++. +.+|+++++ ++++||++||+||++||++|+.++|.|++++++|++.++.+|+|+++ .++
T Consensus 33 ~~~~g~~~p~f~l~--~~~G~~~~l-~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d----~~~ 105 (186)
T 1jfu_A 33 MASAPLKLPDLAFE--DADGKPKKL-SDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINID----TRD 105 (186)
T ss_dssp ECCSCCBCCCCEEE--CTTSCEEEG-GGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECC----CSC
T ss_pred cccCCCcCCCcEeE--cCCCCEeeH-HHcCCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECC----CCC
Confidence 55789999999964 569999999 89999999999999999999999999999999999778999999873 234
Q ss_pred HHHHHHHHHHcCCc-cceeecCChhHHHHhCCC----ceeEEEEECCCCcEEEEecCCCc--hhhHHHHHHHHHHH
Q 001380 503 LEAIRNAVLRYGIS-HPVVNDGDMNLWRELGVN----SWPTFAVVGPNGKLLAQLAGEGH--RKDLDDLVEAALLF 571 (1089)
Q Consensus 503 ~~~~~~~~~~~~~~-~~v~~d~~~~l~~~~~v~----~~Pt~~lid~~G~i~~~~~G~~~--~~~l~~~l~~~l~~ 571 (1089)
.+.+++++++++++ ++++.|.+..+++.|++. ++|++||||++|++++++.|... .+++.+.|+.+++.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~~ 181 (186)
T 1jfu_A 106 PEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAATGK 181 (186)
T ss_dssp TTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHcCCCCCceEECCcchHHHHhccccccCCCCEEEEECCCCCEEEEEecCCccCHHHHHHHHHHHhcc
Confidence 57889999999995 899999999999999996 89999999999999999988764 67888888887754
|
| >2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-20 Score=200.02 Aligned_cols=143 Identities=11% Similarity=0.131 Sum_probs=120.6
Q ss_pred hccCCCCCCCCCCccccCCCCC--ceeeccccc-CCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCC
Q 001380 421 VENRKTTPIVPEFPAKLDWLNT--APLQFRRDL-KGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAK 496 (1089)
Q Consensus 421 ~~~~~~g~~~P~f~~~~~~~~g--~~~~l~~~~-~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~ 496 (1089)
|....+|+++|+|++...+.+| +++++ +++ +||++||+|| ++||++|+.++|.|++++++|+++++.||+|++
T Consensus 22 M~~l~~G~~aP~F~l~~~~~~G~~~~v~L-~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~-- 98 (221)
T 2c0d_A 22 MKLSLVTKKAYNFTAQGLNKNNEIINVDL-SSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISV-- 98 (221)
T ss_dssp ----CTTSBCCCCEEEEECTTSCEEEEEG-GGGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEES--
T ss_pred cccCCCCCCCCCeEEeccccCCCccEEeH-HHHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeC--
Confidence 3346799999999964322278 89999 899 9999999999 999999999999999999999888899999986
Q ss_pred CCChhcHHHHHHHHHHc-------CCccceeecCChhHHHHhCC-----CceeEEEEECCCCcEEEEecCC----Cchhh
Q 001380 497 FDNEKDLEAIRNAVLRY-------GISHPVVNDGDMNLWRELGV-----NSWPTFAVVGPNGKLLAQLAGE----GHRKD 560 (1089)
Q Consensus 497 ~~~~~~~~~~~~~~~~~-------~~~~~v~~d~~~~l~~~~~v-----~~~Pt~~lid~~G~i~~~~~G~----~~~~~ 560 (1089)
++.+.+++|++++ +++||++.|.+.++++.|++ ..+|++||||++|+|++.+.|. .+.++
T Consensus 99 ----D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~e 174 (221)
T 2c0d_A 99 ----DSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNVLYDNSFALRGLFIIDKNGCVRHQTVNDLPIGRNVQE 174 (221)
T ss_dssp ----SCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHH
T ss_pred ----CCHHHHHHHHHHhhhhcCccCCceEEEECCchHHHHHcCCcccCCCccceEEEECCCCeEEEEEecCCCCCCCHHH
Confidence 4567788999988 78999999999999999999 4799999999999999998764 34567
Q ss_pred HHHHHHHHHH
Q 001380 561 LDDLVEAALL 570 (1089)
Q Consensus 561 l~~~l~~~l~ 570 (1089)
+.+.|+.+..
T Consensus 175 ll~~l~~L~~ 184 (221)
T 2c0d_A 175 VLRTIDSIIH 184 (221)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 7777776554
|
| >2w43_A Hypothetical 2-haloalkanoic acid dehalogenase; hydrolase, metabolic process; HET: MES; 1.66A {Sulfolobus tokodaii} PDB: 2w11_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-21 Score=201.88 Aligned_cols=124 Identities=19% Similarity=0.274 Sum_probs=111.8
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEE
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIV 244 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~ 244 (1089)
.++||+.+ |+.|+++ ++++|+||.....++..++++|+. .+|+.++++++....||++++|..+++++| |++|+|
T Consensus 74 ~~~~~~~~-l~~l~~~-~~~~i~t~~~~~~~~~~l~~~~l~-~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~--~~~~~~ 148 (201)
T 2w43_A 74 KAYEDTKY-LKEISEI-AEVYALSNGSINEVKQHLERNGLL-RYFKGIFSAESVKEYKPSPKVYKYFLDSIG--AKEAFL 148 (201)
T ss_dssp EECGGGGG-HHHHHHH-SEEEEEESSCHHHHHHHHHHTTCG-GGCSEEEEGGGGTCCTTCHHHHHHHHHHHT--CSCCEE
T ss_pred ccCCChHH-HHHHHhC-CeEEEEeCcCHHHHHHHHHHCCcH-HhCcEEEehhhcCCCCCCHHHHHHHHHhcC--CCcEEE
Confidence 78999999 9999999 999999999999999999999996 999999999999999999999999999999 999999
Q ss_pred EcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHH
Q 001380 245 IEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDIL 295 (1089)
Q Consensus 245 VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll 295 (1089)
|||+.+|+++|+++|+.+++|.++....+.....|++++.++.++ .++|
T Consensus 149 vGD~~~Di~~a~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~el--~~~l 197 (201)
T 2w43_A 149 VSSNAFDVIGAKNAGMRSIFVNRKNTIVDPIGGKPDVIVNDFKEL--YEWI 197 (201)
T ss_dssp EESCHHHHHHHHHTTCEEEEECSSSCCCCTTSCCCSEEESSHHHH--HHHH
T ss_pred EeCCHHHhHHHHHCCCEEEEECCCCCCccccCCCCCEEECCHHHH--HHHH
Confidence 999999999999999999999996532222345799999999887 4444
|
| >1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-20 Score=194.68 Aligned_cols=138 Identities=17% Similarity=0.108 Sum_probs=120.6
Q ss_pred CCCCCCCCCccccCCC-CC--ceeecccccCCCEEEEEEec-CCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCCh
Q 001380 425 KTTPIVPEFPAKLDWL-NT--APLQFRRDLKGKVVVLDFWT-YCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNE 500 (1089)
Q Consensus 425 ~~g~~~P~f~~~~~~~-~g--~~~~l~~~~~gk~vll~Fwa-~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~ 500 (1089)
.+|+++|+|++. ++ +| +++++ ++++||++||+||+ +||++|+.++|.|++++++|+++++.||+|++
T Consensus 2 ~~G~~aP~f~l~--~~~~G~~~~v~l-~~~~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~------ 72 (186)
T 1n8j_A 2 LINTKIKPFKNQ--AFKNGEFIEVTE-KDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVST------ 72 (186)
T ss_dssp CTTCBCCCCEEE--EEETTEEEEEEH-HHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEES------
T ss_pred CCCCcCCCcEee--cccCCcceEEEH-HHHCCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEEC------
Confidence 479999999964 44 58 89999 89999999999995 99999999999999999999888999999986
Q ss_pred hcHHHHHHHHHHc----CCccceeecCChhHHHHhCCC------ceeEEEEECCCCcEEEEecCCC----chhhHHHHHH
Q 001380 501 KDLEAIRNAVLRY----GISHPVVNDGDMNLWRELGVN------SWPTFAVVGPNGKLLAQLAGEG----HRKDLDDLVE 566 (1089)
Q Consensus 501 ~~~~~~~~~~~~~----~~~~~v~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~G~~----~~~~l~~~l~ 566 (1089)
++.+.+++|++++ +++||++.|.+.++++.||+. .+|++||||++|+|++.+.|.. +.+++.+.|+
T Consensus 73 d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~~l~~~l~ 152 (186)
T 1n8j_A 73 DTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIK 152 (186)
T ss_dssp SCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCcccCCceeEEECCchHHHHHhCCccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHH
Confidence 3567789999999 899999999999999999997 4799999999999999987754 4667777777
Q ss_pred HHHHH
Q 001380 567 AALLF 571 (1089)
Q Consensus 567 ~~l~~ 571 (1089)
.+...
T Consensus 153 ~l~~~ 157 (186)
T 1n8j_A 153 AAQYV 157 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
|
| >2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.3e-21 Score=197.22 Aligned_cols=142 Identities=13% Similarity=0.149 Sum_probs=119.4
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCC--h
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDN--E 500 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~--~ 500 (1089)
...+|+.+|+|+++ +++|+++++ ++++||++||+||++||++|+.++|.|++++++|+++++.+|+|+++.+.. .
T Consensus 20 ~~~~g~~~p~f~l~--~~~G~~~~l-~~~~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~e~ 96 (183)
T 2obi_A 20 DWRCARSMHEFSAK--DIDGHMVNL-DKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEP 96 (183)
T ss_dssp CGGGCCSGGGCEEE--BTTSCEEEG-GGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCC
T ss_pred CCcccCcccceEEE--cCCCCEeeH-HHcCCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCCCCC
Confidence 45789999999964 569999999 899999999999999999999999999999999998889999999865432 3
Q ss_pred hcHHHHHHHHHHcCCccceee--cCChhHH----HHh-------C-----CCceeEEEEECCCCcEEEEecCCCchhhHH
Q 001380 501 KDLEAIRNAVLRYGISHPVVN--DGDMNLW----REL-------G-----VNSWPTFAVVGPNGKLLAQLAGEGHRKDLD 562 (1089)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~v~~--d~~~~l~----~~~-------~-----v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~ 562 (1089)
++.+.+++|+++++++||++. |.++..+ +.+ + +..+|++||||++|++++++.|..+.+++.
T Consensus 97 ~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~ 176 (183)
T 2obi_A 97 GSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIE 176 (183)
T ss_dssp SCHHHHHHHHHTTTCCSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEECTTSCTHHHH
T ss_pred CCHHHHHHHHHHcCCCceEEeeeccCCcchhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEeCCCCCHHHHH
Confidence 578899999999999999986 6555433 222 5 445799999999999999999988877776
Q ss_pred HHHHH
Q 001380 563 DLVEA 567 (1089)
Q Consensus 563 ~~l~~ 567 (1089)
+.|++
T Consensus 177 ~~i~~ 181 (183)
T 2obi_A 177 KDLPH 181 (183)
T ss_dssp TTSGG
T ss_pred HHHHH
Confidence 66543
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-20 Score=233.02 Aligned_cols=233 Identities=20% Similarity=0.237 Sum_probs=177.8
Q ss_pred CCCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC
Q 001380 597 TSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT 676 (1089)
Q Consensus 597 ~~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~ 676 (1089)
...+..|.+|++++.+++|||+|..+++|.+++++|... +.. .. ......+..|.||++++.++.|||+|.
T Consensus 402 ~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~---~~~-~~-----~~i~~~~~~P~glavD~~~g~LY~tD~ 472 (699)
T 1n7d_A 402 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG---VSS-YD-----TVISRDIQAPDGLAVDWIHSNIYWTDS 472 (699)
T ss_dssp SCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC----CC-CC-----CBCCSCC--CCCEECCCSSSBCEECCT
T ss_pred eccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCC---Ccc-eE-----EEEeCCCCCcceEEEEeeCCcEEEEec
Confidence 345788999999988999999999999999999987310 000 00 011123568999999976666999999
Q ss_pred CCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC-cEEEEEECCCCeEEEEeC
Q 001380 677 ENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ-HQIWEHSTVDGVTRAFSG 755 (1089)
Q Consensus 677 ~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~-~~I~~~~~~~g~~~~~~g 755 (1089)
.+++|.+++++++.++++...+ +..|.+|+++|.++.|||++++. ++|+++++.+...+.+.
T Consensus 473 ~~~~I~v~d~dg~~~~~l~~~~----------------~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~- 535 (699)
T 1n7d_A 473 VLGTVSVADTKGVKRKTLFREQ----------------GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV- 535 (699)
T ss_dssp TTSCEEEEBSSSCCEEEECCCS----------------SCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES-
T ss_pred cCCeEEEEecCCCceEEEEeCC----------------CCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE-
Confidence 9999999999988887775322 45899999999888999999886 89999887654443332
Q ss_pred CCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCcccccc
Q 001380 756 DGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVL 835 (1089)
Q Consensus 756 ~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~ 835 (1089)
...+.+|+||++++++++|||+|+.+++|+++++++...+++... ...
T Consensus 536 -------------~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~-------------------~~~ 583 (699)
T 1n7d_A 536 -------------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED-------------------EKR 583 (699)
T ss_dssp -------------CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCC-------------------SSS
T ss_pred -------------eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEec-------------------CCc
Confidence 134678999999998889999999999999999987655555321 123
Q ss_pred ccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEcc
Q 001380 836 LQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQ 901 (1089)
Q Consensus 836 l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~ 901 (1089)
+.+|.||+++. +.|||+|+.+++|.++++.++...+.... .+..|.+|++..
T Consensus 584 ~~~P~glavd~-~~lywtd~~~~~V~~~d~~~G~~~~~i~~-------------~~~~P~~i~v~~ 635 (699)
T 1n7d_A 584 LAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLLAE-------------NLLSPEDMVLFH 635 (699)
T ss_dssp CSSCCCCEEET-TEEEEECSTTTCEEEEETTTEEEEECCCT-------------TCSSCCCCCBCS
T ss_pred CCCceEeEEEC-CEEEEEeCCCCeEEEEEccCCCceEEeec-------------CCCCCcEEEEeC
Confidence 67899999985 48999999999999999877665554322 355688888764
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3e-20 Score=180.88 Aligned_cols=133 Identities=27% Similarity=0.436 Sum_probs=121.5
Q ss_pred CCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHH
Q 001380 427 TPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAI 506 (1089)
Q Consensus 427 g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~ 506 (1089)
|.++|+|++. +++|+.+++ ++++||++||+||++||++|+.++|.|++++++++ ++.+++|++ +++.+.+
T Consensus 2 ~~~~p~~~~~--~~~g~~~~l-~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~-----~~~~~~~ 71 (136)
T 1zzo_A 2 VPAQLQFSAK--TLDGHDFHG-ESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP--EVTFVGVAG-----LDQVPAM 71 (136)
T ss_dssp CCGGGCCEEE--BTTSCEEEG-GGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEEC-----SSCHHHH
T ss_pred CCCCCCcccc--cCCCCEeeH-HHhCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC--CeEEEEEeC-----CCCHHHH
Confidence 6789999964 569999999 88999999999999999999999999999999998 699999975 4678899
Q ss_pred HHHHHHcCC-ccceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 507 RNAVLRYGI-SHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 507 ~~~~~~~~~-~~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
+++++++++ +|+++.|.+..+++.|++.++|++++||++|+++ ++.|..+.+.+.+.|+++++
T Consensus 72 ~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~~id~~g~i~-~~~g~~~~~~l~~~l~~~l~ 135 (136)
T 1zzo_A 72 QEFVNKYPVKTFTQLADTDGSVWANFGVTQQPAYAFVDPHGNVD-VVRGRMSQDELTRRVTALTS 135 (136)
T ss_dssp HHHHHHTTCTTSEEEECTTCHHHHHTTCCSSSEEEEECTTCCEE-EEESCCCHHHHHHHHHHHC-
T ss_pred HHHHHHcCCCceEEEEcCCcHHHHHcCCCCCceEEEECCCCCEE-EEecCCCHHHHHHHHHHHhc
Confidence 999999999 9999999999999999999999999999999999 99999888889888887654
|
| >2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.6e-20 Score=187.74 Aligned_cols=139 Identities=14% Similarity=0.162 Sum_probs=123.5
Q ss_pred CCCccccCCCCCceeecccccCCCEEEEEEecCCCcc-hhhhhhhHHHHHHHcCC----CCEEEEEEeCCCCCChhcHHH
Q 001380 431 PEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCIN-CMHVLPDLEFLEKKYKD----MPFTVVGVHSAKFDNEKDLEA 505 (1089)
Q Consensus 431 P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~-C~~~~p~l~~l~~~~~~----~~v~vi~v~~~~~~~~~~~~~ 505 (1089)
|+|++. +.+|+.+++ ++++||++||+||++||++ |+.++|.|++++++|++ .++.+|+|+++ ...++++.
T Consensus 7 p~f~l~--~~~G~~~~l-~~~~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d--~~~d~~~~ 81 (171)
T 2rli_A 7 GDFHLL--DHRGRARCK-ADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVD--PERDDVEA 81 (171)
T ss_dssp SCCEEE--ETTSCEEET-TTTTTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESC--STTCCHHH
T ss_pred CCeEEE--eCCCCEEeH-HHhCCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEEC--CCCCCHHH
Confidence 899864 559999999 8999999999999999998 99999999999999963 57999999874 12357889
Q ss_pred HHHHHHHcCCccceeecCC---hhHHHHhCCCcee---------------EEEEECCCCcEEEEecCCCchhhHHHHHHH
Q 001380 506 IRNAVLRYGISHPVVNDGD---MNLWRELGVNSWP---------------TFAVVGPNGKLLAQLAGEGHRKDLDDLVEA 567 (1089)
Q Consensus 506 ~~~~~~~~~~~~~v~~d~~---~~l~~~~~v~~~P---------------t~~lid~~G~i~~~~~G~~~~~~l~~~l~~ 567 (1089)
+++|+++++++|+++.+.. .++++.|+|..+| ++||||++|+++.++.|..+.+++.+.|++
T Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ 161 (171)
T 2rli_A 82 MARYVQDFHPRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRR 161 (171)
T ss_dssp HHHHHHTTCTTCCEEECCHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCeEEEeCCHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCHHHHHHHHHH
Confidence 9999999999999998753 4789999999988 999999999999999999999999999999
Q ss_pred HHHHhcc
Q 001380 568 ALLFYGK 574 (1089)
Q Consensus 568 ~l~~~~~ 574 (1089)
+++.++.
T Consensus 162 ll~~~~~ 168 (171)
T 2rli_A 162 HMAAFRS 168 (171)
T ss_dssp HHHHHCC
T ss_pred HHHHHHh
Confidence 9987653
|
| >1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-20 Score=191.90 Aligned_cols=143 Identities=20% Similarity=0.265 Sum_probs=122.4
Q ss_pred ccCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCc-chhhhhhhHHHHHHHcCCCC--EEEEEEeCCCCC
Q 001380 422 ENRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCI-NCMHVLPDLEFLEKKYKDMP--FTVVGVHSAKFD 498 (1089)
Q Consensus 422 ~~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~-~C~~~~p~l~~l~~~~~~~~--v~vi~v~~~~~~ 498 (1089)
....+|+.+|+|++. +.+|+.+++ ++++||++||+||++||+ +|+.++|.|++++++|++.+ +.||+|+++.
T Consensus 5 ~~l~~g~~~p~f~l~--~~~G~~~~l-~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~-- 79 (174)
T 1xzo_A 5 IKDPLNYEVEPFTFQ--NQDGKNVSL-ESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDP-- 79 (174)
T ss_dssp CCSCCCEECCCCEEE--CTTSCEEET-GGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCT--
T ss_pred CcCccccccCCcEEE--cCCCCEEeh-hhcCCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCC--
Confidence 356789999999964 569999999 889999999999999999 99999999999999998665 9999998731
Q ss_pred ChhcHHHHHHHHHHcCCcc---ceeecCChhHHHHh----------------CCCceeEEEEECCCCcEEEEecCCC--c
Q 001380 499 NEKDLEAIRNAVLRYGISH---PVVNDGDMNLWREL----------------GVNSWPTFAVVGPNGKLLAQLAGEG--H 557 (1089)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~---~v~~d~~~~l~~~~----------------~v~~~Pt~~lid~~G~i~~~~~G~~--~ 557 (1089)
..++.+.+++|+++++++| +++.|.+.++.+.| ++...|++||||++|+|++++.|.. +
T Consensus 80 ~~d~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~~~~~ 159 (174)
T 1xzo_A 80 ENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTP 159 (174)
T ss_dssp TTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCC
T ss_pred CCCCHHHHHHHHHHcCCCCcceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCCCCCC
Confidence 2257889999999999998 88899888777665 4578999999999999999998876 4
Q ss_pred hhhHHHHHHHHH
Q 001380 558 RKDLDDLVEAAL 569 (1089)
Q Consensus 558 ~~~l~~~l~~~l 569 (1089)
.+++.+.|++++
T Consensus 160 ~~~l~~~l~~ll 171 (174)
T 1xzo_A 160 YDDIISDVKSAS 171 (174)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 677777777665
|
| >1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.82 E-value=4e-20 Score=191.33 Aligned_cols=138 Identities=19% Similarity=0.178 Sum_probs=123.5
Q ss_pred CCCCCCCCCccccCCCCCc----eeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCC
Q 001380 425 KTTPIVPEFPAKLDWLNTA----PLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDN 499 (1089)
Q Consensus 425 ~~g~~~P~f~~~~~~~~g~----~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~ 499 (1089)
.+|+++|+|++. +.+|+ ++++ ++++||++||+|| ++||++|+.++|.|++++++|+++++.+|+|++
T Consensus 2 ~~G~~~P~f~l~--~~~g~~~~~~~~l-~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~----- 73 (187)
T 1we0_A 2 LIGTEVQPFRAQ--AFQSGKDFFEVTE-ADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVST----- 73 (187)
T ss_dssp CTTCBCCCCEEE--EECSSSCCEEEET-TTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEES-----
T ss_pred CCCCcCCCeEEe--ccCCCccceEecH-HHHCCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEEC-----
Confidence 579999999965 45888 9999 8999999999999 999999999999999999999887899999986
Q ss_pred hhcHHHHHHHHHHc----CCccceeecCChhHHHHhCCC------ceeEEEEECCCCcEEEEecCCC----chhhHHHHH
Q 001380 500 EKDLEAIRNAVLRY----GISHPVVNDGDMNLWRELGVN------SWPTFAVVGPNGKLLAQLAGEG----HRKDLDDLV 565 (1089)
Q Consensus 500 ~~~~~~~~~~~~~~----~~~~~v~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~G~~----~~~~l~~~l 565 (1089)
++.+.+++|++++ +++|+++.|.+.++++.|++. ++|++||||++|++++++.|.. +.+++.+.|
T Consensus 74 -d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l 152 (187)
T 1we0_A 74 -DTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKV 152 (187)
T ss_dssp -SCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHH
T ss_pred -CCHHHHHHHHHHhccccCCCceEEECCchHHHHHhCCCcCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHH
Confidence 3467788999988 899999999999999999999 9999999999999999988764 577888888
Q ss_pred HHHHHH
Q 001380 566 EAALLF 571 (1089)
Q Consensus 566 ~~~l~~ 571 (1089)
+.+...
T Consensus 153 ~~l~~~ 158 (187)
T 1we0_A 153 KAAQYV 158 (187)
T ss_dssp HHHHHH
T ss_pred HHHhhh
Confidence 877654
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.82 E-value=3.3e-20 Score=180.77 Aligned_cols=131 Identities=27% Similarity=0.400 Sum_probs=119.2
Q ss_pred CCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHH
Q 001380 428 PIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIR 507 (1089)
Q Consensus 428 ~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~ 507 (1089)
.++|+|++ .+++|+.+++ ++++||++||+||++||++|+.++|.|++++++++ ++.+++|++ +++.+.++
T Consensus 2 ~~~p~~~l--~~~~g~~~~l-~~~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~-----~~~~~~~~ 71 (136)
T 1lu4_A 2 DERLQFTA--TTLSGAPFDG-ASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP--AVTFVGIAT-----RADVGAMQ 71 (136)
T ss_dssp GGGGCCEE--EBTTSCEEEG-GGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEEC-----SSCHHHHH
T ss_pred CCCCCeEe--ecCCCCeecH-HHhCCCEEEEEEECCcChhHHHHHHHHHHHHHHCC--CcEEEEEEc-----CCCHHHHH
Confidence 35789985 4569999999 88999999999999999999999999999999998 799999976 45789999
Q ss_pred HHHHHcCCccceeecCChhHHHHhCCCceeEEEEECCCCcEEEEec---CCCchhhHHHHHHHHH
Q 001380 508 NAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLA---GEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 508 ~~~~~~~~~~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~---G~~~~~~l~~~l~~~l 569 (1089)
+++++++++|+++.|.+.++++.|++.++|+++++|++|+++ ++. |..+.+++.+.|++++
T Consensus 72 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~i~-~~~~~~g~~~~~~l~~~l~~ll 135 (136)
T 1lu4_A 72 SFVSKYNLNFTNLNDADGVIWARYNVPWQPAFVFYRADGTST-FVNNPTAAMSQDELSGRVAALT 135 (136)
T ss_dssp HHHHHHTCCSEEEECTTSHHHHHTTCCSSSEEEEECTTSCEE-EECCSSSCCCHHHHHHHHHHC-
T ss_pred HHHHHcCCCceEEECCchhHHHhcCCCCCCEEEEECCCCcEE-EEEcCCCccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999 988 9888888888887654
|
| >3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-20 Score=199.70 Aligned_cols=130 Identities=15% Similarity=0.168 Sum_probs=112.4
Q ss_pred ccCCCCCCCCCCccccC-CCCCceeecccccCCCEEEEEEec-CCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCC
Q 001380 422 ENRKTTPIVPEFPAKLD-WLNTAPLQFRRDLKGKVVVLDFWT-YCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDN 499 (1089)
Q Consensus 422 ~~~~~g~~~P~f~~~~~-~~~g~~~~l~~~~~gk~vll~Fwa-~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~ 499 (1089)
....+|+++|+|++... +-+|+++++ ++++||++||+||+ +||++|+.++|.|++++++|+++++.||+|++
T Consensus 38 ~~l~~G~~aP~f~l~~~~d~~G~~v~l-~~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~----- 111 (222)
T 3ztl_A 38 MVLLPNRPAPEFKGQAVINGEFKEICL-KDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACST----- 111 (222)
T ss_dssp --CCSSEECCCCEEEEEETTEEEEEEG-GGGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEES-----
T ss_pred ccccCCCCCCCeEEecccCCCCcEEeH-HHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEEC-----
Confidence 45689999999997532 335689999 99999999999996 99999999999999999999988999999986
Q ss_pred hhcHHHHHHHHHHc-------CCccceeecCChhHHHHhCCC------ceeEEEEECCCCcEEEEecCCCch
Q 001380 500 EKDLEAIRNAVLRY-------GISHPVVNDGDMNLWRELGVN------SWPTFAVVGPNGKLLAQLAGEGHR 558 (1089)
Q Consensus 500 ~~~~~~~~~~~~~~-------~~~~~v~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~G~~~~ 558 (1089)
++.+..+++++++ +++|+++.|.+.++++.|++. .+|++||||++|+|++.+.|....
T Consensus 112 -D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~ 182 (222)
T 3ztl_A 112 -DSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAFRGLFIIDPNGILRQITINDKPV 182 (222)
T ss_dssp -SCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHHHHTTCBCTTTSSBCEEEEEECTTSEEEEEEEECTTB
T ss_pred -CCHHHHHHHHHHhhhhccccccceeEEeCCchHHHHHcCCeecCCCCccceEEEECCCCeEEEEEecCCCC
Confidence 3455566777765 899999999999999999998 899999999999999998776543
|
| >2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.82 E-value=4e-20 Score=192.70 Aligned_cols=138 Identities=17% Similarity=0.186 Sum_probs=121.5
Q ss_pred cCCCCCCCCCCccccCCCC-------------C--ceeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCC
Q 001380 423 NRKTTPIVPEFPAKLDWLN-------------T--APLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMP 486 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~-------------g--~~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~ 486 (1089)
...+|+++|+|++... + | +++++ ++++||++||+|| ++||++|+.++|.|++++++|++++
T Consensus 3 ~l~~G~~~P~f~l~~~--~~~~~~~~~~~~~~G~~~~v~l-~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~ 79 (195)
T 2bmx_A 3 LLTIGDQFPAYQLTAL--IGGDLSKVDAKQPGDYFTTITS-DEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRD 79 (195)
T ss_dssp BCCTTCBCCCCEEEEE--CSSCGGGSCCSSGGGGEEEEET-TSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTT
T ss_pred cCCCCCcCCCcCcccc--cccccccccccccCCCccEeeH-HHhCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCC
Confidence 4678999999997543 5 6 79999 9999999999999 9999999999999999999999888
Q ss_pred EEEEEEeCCCCCChhcHHHHHHHHHHc----CCccceeecCChhHHHHhCCC-----ceeEEEEECCCCcEEEEecCCC-
Q 001380 487 FTVVGVHSAKFDNEKDLEAIRNAVLRY----GISHPVVNDGDMNLWRELGVN-----SWPTFAVVGPNGKLLAQLAGEG- 556 (1089)
Q Consensus 487 v~vi~v~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~d~~~~l~~~~~v~-----~~Pt~~lid~~G~i~~~~~G~~- 556 (1089)
+.+|+|++ ++.+.+++|++++ +++|+++.|.+.++++.|++. .+|++||||++|+|++++.|..
T Consensus 80 v~vv~Vs~------d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~ 153 (195)
T 2bmx_A 80 AQILGVSI------DSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGVLNADGVADRVTFIVDPNNEIQFVSATAGS 153 (195)
T ss_dssp EEEEEEES------SCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTCBCTTSSBCEEEEEECTTSBEEEEEEECTT
T ss_pred CEEEEEEC------CCHHHHHHHHHHhccccCCceeEEeCCchHHHHHhCCcccCCCccceEEEEcCCCeEEEEEecCCC
Confidence 99999986 3467889999998 899999999999999999999 9999999999999999988765
Q ss_pred ---chhhHHHHHHHHH
Q 001380 557 ---HRKDLDDLVEAAL 569 (1089)
Q Consensus 557 ---~~~~l~~~l~~~l 569 (1089)
+.+++.+.|+.++
T Consensus 154 ~~~~~~~l~~~l~~l~ 169 (195)
T 2bmx_A 154 VGRNVDEVLRVLDALQ 169 (195)
T ss_dssp CCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 4566666666554
|
| >2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-20 Score=196.35 Aligned_cols=141 Identities=14% Similarity=0.108 Sum_probs=119.9
Q ss_pred cCCCCCCCCCCccccC-CCCCceeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCCh
Q 001380 423 NRKTTPIVPEFPAKLD-WLNTAPLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNE 500 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~-~~~g~~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~ 500 (1089)
...+|+++|+|++... +.+|+++++ ++++||++||+|| ++||++|+.++|.|++++++|+++++.||+|++
T Consensus 18 ~~~~G~~aP~f~l~~~~~~~g~~v~l-~d~~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~------ 90 (211)
T 2pn8_A 18 LYFQSMPAPYWEGTAVIDGEFKELKL-TDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSV------ 90 (211)
T ss_dssp -CCSSCBCCCCEEEEEETTEEEEEEG-GGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEES------
T ss_pred cCCCCCcCCCeEeecccCCCCcEEEH-HHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC------
Confidence 4578999999996532 224689999 8999999999999 999999999999999999999988999999986
Q ss_pred hcHHHHHHHHHHc-------CCccceeecCChhHHHHhCCC------ceeEEEEECCCCcEEEEecCCC----chhhHHH
Q 001380 501 KDLEAIRNAVLRY-------GISHPVVNDGDMNLWRELGVN------SWPTFAVVGPNGKLLAQLAGEG----HRKDLDD 563 (1089)
Q Consensus 501 ~~~~~~~~~~~~~-------~~~~~v~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~G~~----~~~~l~~ 563 (1089)
++.+.+++|++++ +++||++.|.+.++++.||+. .+|++||||++|+|++.+.|.. +.+++.+
T Consensus 91 D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~I~~~~~g~~~~~~~~~ell~ 170 (211)
T 2pn8_A 91 DSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLR 170 (211)
T ss_dssp SCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHH
T ss_pred CCHHHHHHHHHHhhhccCccCCceEEEECCchHHHHHcCCcccCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHH
Confidence 4567788899888 789999999999999999995 6999999999999999987643 4456666
Q ss_pred HHHHHHH
Q 001380 564 LVEAALL 570 (1089)
Q Consensus 564 ~l~~~l~ 570 (1089)
.|+.+..
T Consensus 171 ~l~~l~~ 177 (211)
T 2pn8_A 171 LVQAFQY 177 (211)
T ss_dssp HHHHHHH
T ss_pred HHHHhhh
Confidence 6666543
|
| >2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-20 Score=187.52 Aligned_cols=137 Identities=12% Similarity=0.169 Sum_probs=119.2
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCC--EEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCC
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGK--VVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDN 499 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk--~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~ 499 (1089)
...+|+.+|+|++. +.+|+++++ ++++|| ++||+|| ++||++|+.++|.|++++++|++++ .||+|++
T Consensus 6 ~~~~G~~~P~f~l~--~~~G~~v~l-~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~-~vv~is~----- 76 (159)
T 2a4v_A 6 ELEIGDPIPDLSLL--NEDNDSISL-KKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA-AVFGLSA----- 76 (159)
T ss_dssp CCCTTCBCCSCEEE--CTTSCEEEH-HHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC-EEEEEES-----
T ss_pred cCCCCCCCCCeEEE--CCCCCEEeH-HHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC-cEEEEeC-----
Confidence 46789999999964 569999999 899887 8999997 9999999999999999999999888 9999986
Q ss_pred hhcHHHHHHHHHHcCCccceeecCChhHHHHhCCCcee------EEEEECCCCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 500 EKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWP------TFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~P------t~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
++.+.+++|+++++++||++.|.+.++++.||+...| ++||| ++|+|++.+.|.......++.++++.+
T Consensus 77 -d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~p~~g~~~~~~li-~~G~i~~~~~g~~~~~~~~~~~~~l~~ 151 (159)
T 2a4v_A 77 -DSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIF-VDGKLKFKRVKISPEVSVNDAKKEVLE 151 (159)
T ss_dssp -CCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEE-ETTEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccccCCccceEEEE-cCCEEEEEEccCCccccHHHHHHHHHH
Confidence 3677889999999999999999999999999999988 99999 999999999887655444444444433
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-20 Score=190.98 Aligned_cols=138 Identities=20% Similarity=0.341 Sum_probs=121.6
Q ss_pred CCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCC-------
Q 001380 424 RKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAK------- 496 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~------- 496 (1089)
..+|+++|+|++. +++|+.+++ ++++||++||+||++||++|+.++|.|.+++++|+ ++.+|+|+++.
T Consensus 11 ~~~g~~~p~~~l~--~~~g~~~~l-~~~~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~--~v~vv~i~~d~~~~~~~~ 85 (165)
T 3ha9_A 11 EEVLEREASFSLT--TIDGEVISL-NNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR--EISVIAIDFWTAEALKAL 85 (165)
T ss_dssp HHHHHHHHCCCEE--BTTSCEECG-GGCCSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT--TEEEEEEECCSHHHHHHH
T ss_pred ccccCcCCCCEee--cCCCCEeeH-HHhCCCEEEEEEECCCCcchhhhHHHHHHHHHHcC--CcEEEEEEeccccccccc
Confidence 3468899999964 569999999 89999999999999999999999999999999998 79999998731
Q ss_pred ------CCChhcHHHHHHHHHHcCC-ccceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCC-chhhHHHHHHHH
Q 001380 497 ------FDNEKDLEAIRNAVLRYGI-SHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEG-HRKDLDDLVEAA 568 (1089)
Q Consensus 497 ------~~~~~~~~~~~~~~~~~~~-~~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~-~~~~l~~~l~~~ 568 (1089)
....++.+.++++++++++ +|+++.| +.++++.|+|.++|+++|||++|+++. .|.. +.+.+.+.|+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~v~~~P~~~lid~~G~i~~--~g~~~~~~~l~~~l~~l 162 (165)
T 3ha9_A 86 GLNKPGYPPPDTPEMFRKFIANYGDPSWIMVMD-DGSLVEKFNVRSIDYIVIMDKSSNVLY--AGTTPSLGELESVIKSV 162 (165)
T ss_dssp TCCSTTSCCCCCHHHHHHHHHHHSCTTSEEEEC-CSHHHHHTTCCSSSEEEEEETTCCEEE--EEESCCHHHHHHHHHHC
T ss_pred ccccccCCCCCCHHHHHHHHHHcCCCCeeEEeC-hHHHHHHhCCCCceEEEEEcCCCcEEE--eCCCCCHHHHHHHHHHH
Confidence 1122689999999999999 9999999 899999999999999999999999998 6777 788888888765
Q ss_pred H
Q 001380 569 L 569 (1089)
Q Consensus 569 l 569 (1089)
+
T Consensus 163 ~ 163 (165)
T 3ha9_A 163 Q 163 (165)
T ss_dssp -
T ss_pred h
Confidence 5
|
| >1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A* 1aq6_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-19 Score=195.32 Aligned_cols=129 Identities=25% Similarity=0.358 Sum_probs=115.7
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEE
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIV 244 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~ 244 (1089)
.++||+.++|+.|+ |++++|+||.....++..++.+|+. .+|+.++++++....||++.+|+.+++++|++|++|+|
T Consensus 93 ~~~~~~~~~l~~l~--g~~~~i~t~~~~~~~~~~l~~~gl~-~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~ 169 (253)
T 1qq5_A 93 TPYPDAAQCLAELA--PLKRAILSNGAPDMLQALVANAGLT-DSFDAVISVDAKRVFKPHPDSYALVEEVLGVTPAEVLF 169 (253)
T ss_dssp CBCTTHHHHHHHHT--TSEEEEEESSCHHHHHHHHHHTTCG-GGCSEEEEGGGGTCCTTSHHHHHHHHHHHCCCGGGEEE
T ss_pred CCCccHHHHHHHHc--CCCEEEEeCcCHHHHHHHHHHCCch-hhccEEEEccccCCCCCCHHHHHHHHHHcCCCHHHEEE
Confidence 68999999999999 8999999999999999999999996 99999999999999999999999999999999999999
Q ss_pred EcCChhhHHHHHHcCCeEEEEcC-----------------------CCCHHHHhhcCCcEEecCcccCCHHHHHhcc
Q 001380 245 IEDALAGVQAAKAAQMRCIAVTT-----------------------TLSEERLKEASPSLIRKEIGSVSLNDILTGG 298 (1089)
Q Consensus 245 VGD~~~Di~aA~~aG~~~i~V~~-----------------------g~~~~~l~~~~~d~vi~dl~el~i~~ll~~~ 298 (1089)
|||+.+|+++|+++|+.++++++ +....+.....|++++.++.++ .++|...
T Consensus 170 vGD~~~Di~~a~~aG~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el--~~~l~~~ 244 (253)
T 1qq5_A 170 VSSNGFDVGGAKNFGFSVARVARLSQEALARELVSGTIAPLTMFKALRMREETYAEAPDFVVPALGDL--PRLVRGM 244 (253)
T ss_dssp EESCHHHHHHHHHHTCEEEEECCSCHHHHHHHTTSSSCCHHHHHHHHHSSCCTTSCCCSEEESSGGGH--HHHHHHH
T ss_pred EeCChhhHHHHHHCCCEEEEECCcccchhhhhcccccccccccccccccccCCCCCCCCeeeCCHHHH--HHHHHHh
Confidence 99999999999999999999988 3222223346799999999998 6666544
|
| >2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, haloacid dehalogenase-like F PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae} SCOP: c.108.1.3 | Back alignment and structure |
|---|
Probab=99.82 E-value=8.5e-20 Score=188.83 Aligned_cols=177 Identities=19% Similarity=0.259 Sum_probs=141.2
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcC-CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMG-TGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLD 156 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1089)
++|+|+||+||||+++...+..++.++++++|+..+.+.+....+ .....+. ...... ......+.+.+.+
T Consensus 5 ~~k~i~fDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~----~~~~~~~~~~~~~ 76 (190)
T 2fi1_A 5 KYHDYIWDLGGTLLDNYETSTAAFVETLALYGITQDHDSVYQALKVSTPFAIE----TFAPNL----ENFLEKYKENEAR 76 (190)
T ss_dssp CCSEEEECTBTTTBCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHCHHHHHH----HHCTTC----TTHHHHHHHHHHH
T ss_pred cccEEEEeCCCCcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHccccHHHHH----HHhhhH----HHHHHHHHHHHHH
Confidence 479999999999999998899999999999999877666554432 2222222 111111 1123334444444
Q ss_pred HhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcC
Q 001380 157 KYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILN 236 (1089)
Q Consensus 157 ~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lg 236 (1089)
.+... .++||+.++|+.|+++|++++++||.. ..++..++.+++. .+|+.++++++....||++++|+.+++++|
T Consensus 77 ~~~~~---~~~~~~~~~l~~l~~~g~~~~i~t~~~-~~~~~~l~~~~~~-~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~ 151 (190)
T 2fi1_A 77 ELEHP---ILFEGVSDLLEDISNQGGRHFLVSHRN-DQVLEILEKTSIA-AYFTEVVTSSSGFKRKPNPESMLYLREKYQ 151 (190)
T ss_dssp HTTSC---CBCTTHHHHHHHHHHTTCEEEEECSSC-THHHHHHHHTTCG-GGEEEEECGGGCCCCTTSCHHHHHHHHHTT
T ss_pred hcCcC---ccCcCHHHHHHHHHHCCCcEEEEECCc-HHHHHHHHHcCCH-hheeeeeeccccCCCCCCHHHHHHHHHHcC
Confidence 33322 489999999999999999999999975 4688899999996 999999999999999999999999999999
Q ss_pred CCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC
Q 001380 237 VPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL 269 (1089)
Q Consensus 237 v~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~ 269 (1089)
++ +|++|||+.+|+++|+.+|+.++++.++.
T Consensus 152 ~~--~~~~iGD~~~Di~~a~~aG~~~~~~~~~~ 182 (190)
T 2fi1_A 152 IS--SGLVIGDRPIDIEAGQAAGLDTHLFTSIV 182 (190)
T ss_dssp CS--SEEEEESSHHHHHHHHHTTCEEEECSCHH
T ss_pred CC--eEEEEcCCHHHHHHHHHcCCeEEEECCCC
Confidence 98 99999999999999999999999998754
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-20 Score=188.74 Aligned_cols=138 Identities=20% Similarity=0.249 Sum_probs=125.0
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhc
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKD 502 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~ 502 (1089)
...+|+++|+|++. +.+|+.+++ ++++ |++||+||++||++|+.++|.|++++++| ++.+++|++ +.+++
T Consensus 4 ~l~~g~~~p~f~l~--~~~g~~~~l-~~~~-k~vll~f~~~~C~~C~~~~~~l~~l~~~~---~v~~v~v~~---d~~~~ 73 (154)
T 3ia1_A 4 AVKPGEPLPDFLLL--DPKGQPVTP-ATVS-KPAVIVFWASWCTVCKAEFPGLHRVAEET---GVPFYVISR---EPRDT 73 (154)
T ss_dssp CCCSBEECCCCCEE--CTTSCEECT-TTSC-SSEEEEEECTTCHHHHHHHHHHHHHHHHH---CCCEEEEEC---CTTCC
T ss_pred cCCCCCcCCceEEE--CCCCCEech-HHcC-CeEEEEEEcccChhHHHHHHHHHHHHHHc---CCeEEEEeC---CCccc
Confidence 46789999999964 569999999 8899 99999999999999999999999999999 688899987 35678
Q ss_pred HHHHHHHHHHcCCccceeec---CChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 503 LEAIRNAVLRYGISHPVVND---GDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 503 ~~~~~~~~~~~~~~~~v~~d---~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
.+.+++++++++++|+++.| ....+++.|++.++|+++|||++|+++.++.|..+.+++.+.|++.++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~ 144 (154)
T 3ia1_A 74 REVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVLGQPWTFVVDREGKVVALFAGRAGREALLDALLLAGA 144 (154)
T ss_dssp HHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSBCSSCEEEEECTTSEEEEEEESBCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCcccccccccchHHHHHHhCCCcccEEEEECCCCCEEEEEcCCCCHHHHHHHHHhccC
Confidence 99999999999999999998 778999999999999999999999999999999888888888876543
|
| >3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase-LI superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.3e-20 Score=193.78 Aligned_cols=185 Identities=21% Similarity=0.298 Sum_probs=138.9
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHH-hHhhhc-------CCCHHHHHHHHHhhcCCCCCCHHHHHHH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVE-DFLPFM-------GTGEANFLGGVASVKGVKGFDSEAAKKR 149 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (1089)
++|+|+||+||||+++.. ...++.++++++|+..... .+.... ......+...+....+. ..... .
T Consensus 3 ~~k~viFDlDGTL~d~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~ 76 (200)
T 3cnh_A 3 TIKALFWDIGGVLLTNGW-DREQRADVAQRFGLDTDDFTERHRLAAPELELGRMTLAEYLEQVVFYQPR-DFTPE----D 76 (200)
T ss_dssp CCCEEEECCBTTTBCCSS-CHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHTTTSCC-SSCHH----H
T ss_pred CceEEEEeCCCeeECCCc-chHHHHHHHHHcCCCHHHHHHHHHhhchHHHcCCcCHHHHHHHHHHHcCC-CCCHH----H
Confidence 479999999999999874 3567888888888764322 111110 12223333332221111 11111 2
Q ss_pred HHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHH
Q 001380 150 FFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFL 229 (1089)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~ 229 (1089)
+.+.+.. . ..++||+.++|+.|+++| +++|+||.....++..++.+|+. .+|+.++++++....||++++|.
T Consensus 77 ~~~~~~~----~--~~~~~~~~~~l~~l~~~g-~~~i~s~~~~~~~~~~l~~~~~~-~~f~~~~~~~~~~~~Kp~~~~~~ 148 (200)
T 3cnh_A 77 FRAVMEE----Q--SQPRPEVLALARDLGQRY-RMYSLNNEGRDLNEYRIRTFGLG-EFLLAFFTSSALGVMKPNPAMYR 148 (200)
T ss_dssp HHHHHHH----T--CCBCHHHHHHHHHHTTTS-EEEEEECCCHHHHHHHHHHHTGG-GTCSCEEEHHHHSCCTTCHHHHH
T ss_pred HHHHHHh----c--CccCccHHHHHHHHHHcC-CEEEEeCCcHHHHHHHHHhCCHH-HhcceEEeecccCCCCCCHHHHH
Confidence 2222211 1 258999999999999999 99999999999999999999996 99999999999999999999999
Q ss_pred HHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC-CHHHHhh
Q 001380 230 SASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL-SEERLKE 276 (1089)
Q Consensus 230 ~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~-~~~~l~~ 276 (1089)
++++++|+++++|+||||+.+|+++|+++|+.+++|.++. ..+++.+
T Consensus 149 ~~~~~~~~~~~~~~~vgD~~~Di~~a~~aG~~~~~~~~~~~~~~~l~~ 196 (200)
T 3cnh_A 149 LGLTLAQVRPEEAVMVDDRLQNVQAARAVGMHAVQCVDAAQLREELAA 196 (200)
T ss_dssp HHHHHHTCCGGGEEEEESCHHHHHHHHHTTCEEEECSCHHHHHHHHHH
T ss_pred HHHHHcCCCHHHeEEeCCCHHHHHHHHHCCCEEEEECCchhhHHHHHH
Confidence 9999999999999999999999999999999999998875 3444443
|
| >2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4e-20 Score=187.74 Aligned_cols=144 Identities=22% Similarity=0.250 Sum_probs=125.1
Q ss_pred hhccCCCCCCCCCCccccCCCCCceeecccc-cCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCC
Q 001380 420 DVENRKTTPIVPEFPAKLDWLNTAPLQFRRD-LKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFD 498 (1089)
Q Consensus 420 ~~~~~~~g~~~P~f~~~~~~~~g~~~~l~~~-~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~ 498 (1089)
......+|+++|+|++...+.+|+.+++ ++ .+||++||+||++||++|+.++|.|++++++ ++.+++|++
T Consensus 18 ~~~~~~~G~~~P~f~l~~~~~~g~~~~~-~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~----~v~vv~v~~---- 88 (168)
T 2b1k_A 18 NLESALIGKPVPKFRLESLDNPGQFYQA-DVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ----GIRVVGMNY---- 88 (168)
T ss_dssp -CCCTTTTSBCCCCEEEESSSTTCEEEG-GGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT----TCCEEEEEE----
T ss_pred cccccccCCcCCCeEeecccCCCcEeeh-hHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC----CCEEEEEEC----
Confidence 3446679999999996533228889988 66 4999999999999999999999999999886 688899965
Q ss_pred ChhcHHHHHHHHHHcCCccc-eeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHHhc
Q 001380 499 NEKDLEAIRNAVLRYGISHP-VVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFYG 573 (1089)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~-v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~~~ 573 (1089)
+++.+.+++++++++++|+ ++.|.+.++++.|+|.++|++|+||++|++++++.|..+.+.+.+.|+.+++...
T Consensus 89 -~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~~~ 163 (168)
T 2b1k_A 89 -KDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWEKYS 163 (168)
T ss_dssp -SCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHTTHHHHHHHH
T ss_pred -CCChHHHHHHHHHcCCCCceeeECcchHHHHHcCccccCEEEEECCCCeEEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 4577889999999999998 5788899999999999999999999999999999999999999999988887654
|
| >1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.82 E-value=5.4e-20 Score=185.78 Aligned_cols=122 Identities=12% Similarity=0.000 Sum_probs=110.1
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEec-CCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChh
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWT-YCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEK 501 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa-~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~ 501 (1089)
...+|+++|+|++. +.+|+++++ ++++||++||+||+ +||++|+.++|.|++++++| .++.+|+|+. +
T Consensus 15 ~~~~G~~~P~f~l~--~~~G~~v~l-~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~--~~v~vv~is~------d 83 (163)
T 1psq_A 15 QLQVGDKALDFSLT--TTDLSKKSL-ADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL--DNTVVLTVSM------D 83 (163)
T ss_dssp CCCTTSBCCCCEEE--CTTSCEEEG-GGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TTEEEEEEES------S
T ss_pred CCCCCCCCCCEEEE--cCCCcEeeH-HHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc--CCcEEEEEEC------C
Confidence 35689999999965 569999999 89999999999995 99999999999999999999 6799999986 4
Q ss_pred cHHHHHHHHHHcCC-ccceeec-CChhHHHHhCCC----c--eeEEEEECCCCcEEEEecCC
Q 001380 502 DLEAIRNAVLRYGI-SHPVVND-GDMNLWRELGVN----S--WPTFAVVGPNGKLLAQLAGE 555 (1089)
Q Consensus 502 ~~~~~~~~~~~~~~-~~~v~~d-~~~~l~~~~~v~----~--~Pt~~lid~~G~i~~~~~G~ 555 (1089)
+.+.+++|++++++ +||++.| .+.++++.|++. + .|++||||++|+|++.+.|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~g~ 145 (163)
T 1psq_A 84 LPFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEYVD 145 (163)
T ss_dssp CHHHHHHHHHHHTCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEECS
T ss_pred CHHHHHHHHHhcCCCCcEEecCCchhHHHHHhCCccccCCceEEEEEEEcCCCeEEEEEecC
Confidence 57788999999999 9999999 889999999997 3 49999999999999998775
|
| >1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-20 Score=189.89 Aligned_cols=125 Identities=15% Similarity=0.091 Sum_probs=113.1
Q ss_pred cCCCCCCCCCCccccCCCCC--ceeecccc-cCCCEEEEEEe-cCCCcchh-hhhhhHHHHHHHcCCCCEE-EEEEeCCC
Q 001380 423 NRKTTPIVPEFPAKLDWLNT--APLQFRRD-LKGKVVVLDFW-TYCCINCM-HVLPDLEFLEKKYKDMPFT-VVGVHSAK 496 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g--~~~~l~~~-~~gk~vll~Fw-a~wC~~C~-~~~p~l~~l~~~~~~~~v~-vi~v~~~~ 496 (1089)
...+|+++|+|++.+.+.+| +++++ ++ ++||++||+|| ++||++|+ .++|.|++++++|+++++. ||+|+.
T Consensus 3 ~~~~G~~aP~f~l~~~~~~G~~~~~~l-~~~~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~-- 79 (162)
T 1tp9_A 3 PIAVGDVLPDGKLAYFDEQDQLQEVSV-HSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISV-- 79 (162)
T ss_dssp CCCTTCBCCCCEEEEECTTSCEEEEES-HHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEES--
T ss_pred cCCCCCCCCCeEEEeecCCCCceeEeH-HHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEC--
Confidence 35689999999975446689 99999 88 89999999999 89999999 9999999999999888899 999986
Q ss_pred CCChhcHHHHHHHHHHcCC--ccceeecCChhHHHHhCCC-----------ceeEEEEECCCCcEEEEecCC
Q 001380 497 FDNEKDLEAIRNAVLRYGI--SHPVVNDGDMNLWRELGVN-----------SWPTFAVVGPNGKLLAQLAGE 555 (1089)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~--~~~v~~d~~~~l~~~~~v~-----------~~Pt~~lid~~G~i~~~~~G~ 555 (1089)
++++.+++|++++++ +||++.|.+++++++||+. ..|++|||| +|+|++.+.|.
T Consensus 80 ----d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~~~vid-~G~i~~~~~~~ 146 (162)
T 1tp9_A 80 ----NDPFVMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAANIEG 146 (162)
T ss_dssp ----SCHHHHHHHHHTCTTCSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEEECS
T ss_pred ----CCHHHHHHHHHhcCCCCCeEEEECCCchHHHHcCcccccccCCCCccceeEEEEEE-CCEEEEEEeeC
Confidence 467889999999999 8999999999999999997 379999999 99999998876
|
| >3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-20 Score=193.61 Aligned_cols=131 Identities=21% Similarity=0.275 Sum_probs=118.2
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCCh---HhHHHHHHHCCCCCCCccEEEEcCCc----cCCCCCHHHHHHHHHHcCC
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADR---IKVDANLAAAGLPVSMFDAIVSADAF----ENLKPAPDIFLSASKILNV 237 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~---~~~~~~l~~~gl~~~~fd~i~~~~~~----~~~KP~~~~~~~~l~~lgv 237 (1089)
.++||+.++|+.|+++|++++|+||+.. ..++..++.+|+. .+|+.++++++. +..||+|++|+.+++++|+
T Consensus 34 ~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~l~~~gl~-~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~ 112 (189)
T 3ib6_A 34 VLRKNAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGII-DYFDFIYASNSELQPGKMEKPDKTIFDFTLNALQI 112 (189)
T ss_dssp CBCTTHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHTTCG-GGEEEEEECCTTSSTTCCCTTSHHHHHHHHHHHTC
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEECCCccchHHHHHHHHhcCch-hheEEEEEccccccccCCCCcCHHHHHHHHHHcCC
Confidence 7899999999999999999999999876 8999999999996 999999999886 7889999999999999999
Q ss_pred CCCcEEEEcCC-hhhHHHHHHcCCeEEEEcCCCC---HHHHhhcCCcEEec--CcccCCHHHHHhcc
Q 001380 238 PTSECIVIEDA-LAGVQAAKAAQMRCIAVTTTLS---EERLKEASPSLIRK--EIGSVSLNDILTGG 298 (1089)
Q Consensus 238 ~p~~~v~VGD~-~~Di~aA~~aG~~~i~V~~g~~---~~~l~~~~~d~vi~--dl~el~i~~ll~~~ 298 (1089)
+|++|+||||+ .+|+.+|+++||++++|.++.. .+.+....|+++++ ++.+| ..+|.+.
T Consensus 113 ~~~~~l~VGD~~~~Di~~A~~aG~~~i~v~~~~~~~~~~~~~~~~~~~v~~~~~l~~l--~~~l~l~ 177 (189)
T 3ib6_A 113 DKTEAVMVGNTFESDIIGANRAGIHAIWLQNPEVCLQDERLPLVAPPFVIPVWDLADV--PEALLLL 177 (189)
T ss_dssp CGGGEEEEESBTTTTHHHHHHTTCEEEEECCTTTCBCSSCCCBCSSSCEEEESSGGGH--HHHHHHH
T ss_pred CcccEEEECCCcHHHHHHHHHCCCeEEEECCccccccccccccCCCcceeccccHHhH--HHHHHHH
Confidence 99999999999 5999999999999999998752 34455558999999 99988 6776654
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-19 Score=225.67 Aligned_cols=233 Identities=17% Similarity=0.173 Sum_probs=178.2
Q ss_pred CCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCC--
Q 001380 612 NNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVND-- 689 (1089)
Q Consensus 612 ~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g-- 689 (1089)
...|++++. +.|.+++.++.....+.. .+..|.||++++.++.|||+|..+++|+++++++.
T Consensus 377 ~~~ll~~~~--~~I~~id~~~~~~~~~~~--------------~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~ 440 (699)
T 1n7d_A 377 IAYLFFTNR--HEVRKMTLDRSEYTSLIP--------------NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG 440 (699)
T ss_dssp CCCBCCCCT--TC-CEECTTSCCEECCSC--------------CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC
T ss_pred ceeEEecCc--cceEEEeCCCCcceeeec--------------cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCC
Confidence 345666654 688899888654433221 14589999999988889999999999999998752
Q ss_pred --eEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCC
Q 001380 690 --TVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSS 767 (1089)
Q Consensus 690 --~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~ 767 (1089)
...++. ...+..|.+|++++.++.|||++.++++|+++++.+...+.+..
T Consensus 441 ~~~~~~~i----------------~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~------------ 492 (699)
T 1n7d_A 441 VSSYDTVI----------------SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR------------ 492 (699)
T ss_dssp -CCCCCBC----------------CSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECC------------
T ss_pred CcceEEEE----------------eCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEe------------
Confidence 111111 12256899999998788999999999999999998877666642
Q ss_pred CCccccCCceEEEcCCCCEEEEEeCCC-CeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEcc
Q 001380 768 LNTSFAQPSGISLSPDFMEIYVADSES-SSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAK 846 (1089)
Q Consensus 768 ~~~~~~~P~glav~~~g~~lyvad~~~-~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~ 846 (1089)
..+..|.||++++++++|||+|.+. ++|+++++++...+++.. ..+..|.||++|+
T Consensus 493 --~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~---------------------~~l~~PnGlavd~ 549 (699)
T 1n7d_A 493 --EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT---------------------ENIQWPNGITLDL 549 (699)
T ss_dssp --CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESC---------------------SSCSSCCCEEECT
T ss_pred --CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEe---------------------CCCCCccEEEEec
Confidence 2356799999999877999999876 899999987654443321 1267899999997
Q ss_pred C-CcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 847 N-GQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 847 ~-G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
+ ++|||+|+.+++|.+++.++....++.... ..+..|.||+++.+ +|||+|+.+++|.++++.++
T Consensus 550 ~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~-----------~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 550 LSGRLYWVDSKLHSISSIDVNGGNRKTILEDE-----------KRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp TTCCEEEEETTTTEEEEECSSSSCCEEECCCS-----------SSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred cCCEEEEEecCCCeEEEEccCCCceEEEEecC-----------CcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence 5 689999999999999999877666665321 25788999999864 89999999999999998654
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-20 Score=190.04 Aligned_cols=134 Identities=19% Similarity=0.288 Sum_probs=122.3
Q ss_pred cCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCc
Q 001380 437 LDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGIS 516 (1089)
Q Consensus 437 ~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~ 516 (1089)
+.+++|+.+++ ++++||++||+||++||++|+.++|.|++++++|++.++.+|+|+++....+++.+.+++++++++++
T Consensus 23 l~~~~g~~~~~-~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~ 101 (164)
T 2h30_A 23 MKTADNRPASV-YLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYP 101 (164)
T ss_dssp CEETTSSBGGG-GCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCT
T ss_pred cCCCCCCEeeH-HHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCC
Confidence 44669999999 88999999999999999999999999999999998888999999987666677888999999999998
Q ss_pred -cceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHH
Q 001380 517 -HPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLF 571 (1089)
Q Consensus 517 -~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~ 571 (1089)
+++..|.+.++++.|+|.++|+++|||++|+++.++.|..+.+.+.++|+.+++.
T Consensus 102 ~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~~~~ 157 (164)
T 2h30_A 102 KLPVVTDNGGTIAQNLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRNPNAD 157 (164)
T ss_dssp TSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTTCC
T ss_pred cceEEEcCchHHHHHcCCCccceEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999998888888888876653
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-17 Score=184.74 Aligned_cols=241 Identities=15% Similarity=0.162 Sum_probs=187.1
Q ss_pred CCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCC
Q 001380 600 LKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENH 679 (1089)
Q Consensus 600 l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~ 679 (1089)
...|.++++++ +|++|+++...++|.+++.+|+.. .+... . ....|.+|+++++|+ +|+++..++
T Consensus 56 ~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~-~~~~~-~-----------~~~~~~~i~~~~~g~-l~v~~~~~~ 120 (299)
T 2z2n_A 56 DAKVMCLTISS-DGEVWFTENAANKIGRITKKGIIK-EYTLP-N-----------PDSAPYGITEGPNGD-IWFTEMNGN 120 (299)
T ss_dssp TCCEEEEEECT-TSCEEEEETTTTEEEEECTTSCEE-EEECS-S-----------TTCCEEEEEECTTSC-EEEEETTTT
T ss_pred cCceeeEEECC-CCCEEEeCCCCCeEEEECCCCcEE-EEeCC-C-----------cCCCceeeEECCCCC-EEEEecCCc
Confidence 36799999997 889999999889999999987754 33321 1 135799999999888 999999899
Q ss_pred EEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCcc
Q 001380 680 ALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYE 759 (1089)
Q Consensus 680 ~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~ 759 (1089)
.|.++++ ++.+..+.... ....|.+++++++| .+|+++..++.|+++++ ++.+..+...
T Consensus 121 ~i~~~d~-~g~~~~~~~~~---------------~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~--- 179 (299)
T 2z2n_A 121 RIGRITD-DGKIREYELPN---------------KGSYPSFITLGSDN-ALWFTENQNNAIGRITE-SGDITEFKIP--- 179 (299)
T ss_dssp EEEEECT-TCCEEEEECSS---------------TTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEEECS---
T ss_pred eEEEECC-CCCEEEecCCC---------------CCCCCceEEEcCCC-CEEEEeCCCCEEEEEcC-CCcEEEeeCC---
Confidence 9999998 66665554211 13479999999987 89999998999999999 6766655321
Q ss_pred ccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCc
Q 001380 760 RNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHP 839 (1089)
Q Consensus 760 ~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P 839 (1089)
.....|.+|+++++| .||+++...+.|.++++ ++....+... .....|
T Consensus 180 ----------~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~--------------------~~~~~~ 227 (299)
T 2z2n_A 180 ----------TPASGPVGITKGNDD-ALWFVEIIGNKIGRITT-SGEITEFKIP--------------------TPNARP 227 (299)
T ss_dssp ----------STTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEEEEECS--------------------STTCCE
T ss_pred ----------CCCCcceeEEECCCC-CEEEEccCCceEEEECC-CCcEEEEECC--------------------CCCCCc
Confidence 224568999999998 79999999999999998 5555433110 114579
Q ss_pred eEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEe
Q 001380 840 LGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLD 919 (1089)
Q Consensus 840 ~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~ 919 (1089)
.+++++++|++||++..++.|.++|++ +.+..+...+ ....|.++++ ++|+|||++. ++.|.+++
T Consensus 228 ~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~------------~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~ 292 (299)
T 2z2n_A 228 HAITAGAGIDLWFTEWGANKIGRLTSN-NIIEEYPIQI------------KSAEPHGICF-DGETIWFAME-CDKIGKLT 292 (299)
T ss_dssp EEEEECSTTCEEEEETTTTEEEEEETT-TEEEEEECSS------------SSCCEEEEEE-CSSCEEEEET-TTEEEEEE
T ss_pred eeEEECCCCCEEEeccCCceEEEECCC-CceEEEeCCC------------CCCccceEEe-cCCCEEEEec-CCcEEEEE
Confidence 999999999999999999999999994 6666653211 2456999999 8999999987 68999998
Q ss_pred CCCC
Q 001380 920 LNKE 923 (1089)
Q Consensus 920 ~~~~ 923 (1089)
+.+.
T Consensus 293 ~~~~ 296 (299)
T 2z2n_A 293 LIKD 296 (299)
T ss_dssp EC--
T ss_pred cCcc
Confidence 8765
|
| >2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.9e-21 Score=203.68 Aligned_cols=196 Identities=21% Similarity=0.234 Sum_probs=137.2
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhh----cCCCH--HHH------HHHHHhhcCCCCCCHHH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPF----MGTGE--ANF------LGGVASVKGVKGFDSEA 145 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~----~~~~~--~~~------~~~~~~~~~~~~~~~~~ 145 (1089)
++++|+||+||||+|+...+..++.++++++|+..+.+++... .+... ... ...+....+... .++
T Consensus 2 ~~k~viFDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~ 79 (220)
T 2zg6_A 2 KYKAVLVDFGNTLVGFKPVFYEKVYQVLKDNGYDLDLRKVFRAYAKAMGMINYPDEDGLEHVDPKDFLYILGIYP--SER 79 (220)
T ss_dssp CCCEEEECSBTTTEEEEETTHHHHHHHHHHTTCCCCHHHHHHHHHHHGGGCCC-----CCCCCHHHHHHHHTCCC--CHH
T ss_pred CceEEEEcCCCceecccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhccCCCccccccccHHHHHHHcCCCC--cHH
Confidence 4789999999999999988889999999999998776554321 12110 000 223333334332 223
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCH
Q 001380 146 AKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAP 225 (1089)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~ 225 (1089)
...++.+ .+.......++||+.++|+.|+++|++++|+||... .++..++++|+. .+||.++++++++..||+|
T Consensus 80 ~~~~~~~----~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~Tn~~~-~~~~~l~~~gl~-~~f~~~~~~~~~~~~Kp~~ 153 (220)
T 2zg6_A 80 LVKELKE----ADIRDGEAFLYDDTLEFLEGLKSNGYKLALVSNASP-RVKTLLEKFDLK-KYFDALALSYEIKAVKPNP 153 (220)
T ss_dssp HHHHHHH----TTTTCEEEEECTTHHHHHHHHHTTTCEEEECCSCHH-HHHHHHHHHTCG-GGCSEEC-----------C
T ss_pred HHHHHHH----HhhcccCceECcCHHHHHHHHHHCCCEEEEEeCCcH-HHHHHHHhcCcH-hHeeEEEeccccCCCCCCH
Confidence 3333333 222222346899999999999999999999999876 578899999996 9999999999999999999
Q ss_pred HHHHHHHHHcCCCCCcEEEEcCChh-hHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccC
Q 001380 226 DIFLSASKILNVPTSECIVIEDALA-GVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 226 ~~~~~~l~~lgv~p~~~v~VGD~~~-Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el 289 (1089)
++|..+++++|++| +||||+.+ |+.+|+++||.+++|.++....++ ++++.++.++
T Consensus 154 ~~~~~~~~~~~~~~---~~vgD~~~~Di~~a~~aG~~~i~v~~~~~~~~~-----~~~i~~l~el 210 (220)
T 2zg6_A 154 KIFGFALAKVGYPA---VHVGDIYELDYIGAKRSYVDPILLDRYDFYPDV-----RDRVKNLREA 210 (220)
T ss_dssp CHHHHHHHHHCSSE---EEEESSCCCCCCCSSSCSEEEEEBCTTSCCTTC-----CSCBSSHHHH
T ss_pred HHHHHHHHHcCCCe---EEEcCCchHhHHHHHHCCCeEEEECCCCCCCCc-----ceEECCHHHH
Confidence 99999999999987 99999997 999999999999999875322111 4567777766
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-18 Score=196.36 Aligned_cols=270 Identities=17% Similarity=0.164 Sum_probs=186.8
Q ss_pred CCCceEEEeecCCeEEEEeCC--C--CEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC
Q 001380 601 KFPGKLAIDILNNRLFISDSN--H--NRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT 676 (1089)
Q Consensus 601 ~~P~~vavd~~~g~L~vsd~~--~--~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~ 676 (1089)
..|.+|++++ +|++||+... . .+|.+++ +|+.. .+... .. + ....+..|+||++|++|+ |||+|.
T Consensus 17 ~~p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~-~g~~~-~~p~~-~~---~---~~~~~~~p~gv~~d~~g~-L~v~D~ 85 (343)
T 2qe8_A 17 LAPGNITLTP-DGRLFLSLHQFYQPEMQVAELT-QDGLI-PFPPQ-SG---N---AIITFDTVLGIKSDGNGI-VWMLDN 85 (343)
T ss_dssp SCEEEEEECT-TSCEEEEECGGGCCSCSEEEEE-TTEEE-ESCCC-CS---S---CCCCCSCEEEEEECSSSE-EEEEEC
T ss_pred CCcceEEECC-CCCEEEEeCCCCCCceEEEEEC-CCCee-cCCCc-cc---C---cccceeEeeEEEEcCCCc-EEEEcC
Confidence 5899999997 8899999642 2 3899998 77543 33321 10 1 124578999999999987 999998
Q ss_pred C-----CCEEEEEECCCCe-EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC---CCcEEEEEECCC
Q 001380 677 E-----NHALREIDFVNDT-VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA---GQHQIWEHSTVD 747 (1089)
Q Consensus 677 ~-----n~~I~~~d~~~g~-v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~---~~~~I~~~~~~~ 747 (1089)
+ .++|.++|++++. +.++.-..... ...+.|.+|+++++++.+||++. +.+.|+++|+.+
T Consensus 86 g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~-----------~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~ 154 (343)
T 2qe8_A 86 GNQSKSVPKLVAWDTLNNQLSRVIYLPPPIT-----------LSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQT 154 (343)
T ss_dssp HHHHTSCCEEEEEETTTTEEEEEEECCTTTS-----------CTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTT
T ss_pred CCCcCCCCeEEEEECCCCeEEEEEECChhhc-----------ccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCC
Confidence 7 5899999999887 44443211100 11347899999987779999999 889999999988
Q ss_pred CeEEEEeCC--Cccc-----cCCCCCC----CC----ccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCC---CCeEE
Q 001380 748 GVTRAFSGD--GYER-----NLNGSSS----LN----TSFAQPSGISLSPDFMEIYVADSESSSIRALNLKT---GGSRL 809 (1089)
Q Consensus 748 g~~~~~~g~--g~~~-----~~~g~~~----~~----~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~---~~~~~ 809 (1089)
+....+... .... ..+|..- .. .+...|+||+++++|+.||+++..+++|++++... +..
T Consensus 155 g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~-- 232 (343)
T 2qe8_A 155 GLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQL-- 232 (343)
T ss_dssp CCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTC--
T ss_pred CCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCC--
Confidence 877665422 1000 0011000 00 01235899999999999999999989999998531 100
Q ss_pred EecCCCCCCCCcc-ccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccc
Q 001380 810 LAGGDPIFPDNLF-KFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALA 888 (1089)
Q Consensus 810 ~~g~~~~~~~~l~-~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~ 888 (1089)
..+ .++ .+. .......|.|+++|++|++||++..+++|.++|++++.+.++...
T Consensus 233 -~~~------~~~~~~~------~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~------------ 287 (343)
T 2qe8_A 233 -TDA------ELGSKIE------RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD------------ 287 (343)
T ss_dssp -CHH------HHHTTCE------EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC------------
T ss_pred -Chh------hhhcceE------ecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC------------
Confidence 000 000 000 000123699999999999999999999999999955667666531
Q ss_pred cccCCCceEEEccCCcEEEEECCCCEEEEEe
Q 001380 889 AQLSEPAGIIEAQNGNLFIADTNNNIIRYLD 919 (1089)
Q Consensus 889 ~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~ 919 (1089)
..+..|.+++++++|+|||++...+++..|.
T Consensus 288 ~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 288 EKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp GGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred CceecCCeeEECCCCcEEEEeCccccccccc
Confidence 1467899999999999999998777765544
|
| >1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.81 E-value=3.6e-20 Score=187.46 Aligned_cols=133 Identities=17% Similarity=0.124 Sum_probs=114.6
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChh
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEK 501 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~ 501 (1089)
...+|+++|+|++. +.+|+++++ ++++||++||+|| ++||++|+.++|.|++++++| .++.+|+|+. +
T Consensus 16 ~~~~G~~~P~f~l~--~~~G~~v~l-~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~~v~vv~Is~------d 84 (165)
T 1q98_A 16 FPQVGEIVENFILV--GNDLADVAL-NDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL--SNTIVLCISA------D 84 (165)
T ss_dssp CCCTTCBCCCCEEE--CTTSCEEEG-GGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS--TTEEEEEEES------S
T ss_pred cCCCCCCCCCeEEE--CCCCCEEeh-HHhCCCeEEEEEECCCCCCccHHHHHHHHHHHHHc--CCCEEEEEeC------C
Confidence 35689999999964 569999999 8999999999999 899999999999999999999 6799999985 4
Q ss_pred cHHHHHHHHHHcCC-ccceeecC-ChhHHHHhCCCc---------eeEEEEECCCCcEEEEecCC--CchhhHHHHHH
Q 001380 502 DLEAIRNAVLRYGI-SHPVVNDG-DMNLWRELGVNS---------WPTFAVVGPNGKLLAQLAGE--GHRKDLDDLVE 566 (1089)
Q Consensus 502 ~~~~~~~~~~~~~~-~~~v~~d~-~~~l~~~~~v~~---------~Pt~~lid~~G~i~~~~~G~--~~~~~l~~~l~ 566 (1089)
+.+.+++|++++++ +|+++.|. +.++++.|++.. .|++||||++|+|++.+.|. .....++++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~~l~ 162 (165)
T 1q98_A 85 LPFAQARFCGAEGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQLVEEIKEEPNYEAALA 162 (165)
T ss_dssp CHHHHTTCTTTTTCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCHHHHHH
T ss_pred CHHHHHHHHHHcCCCceEEeeccccchHHHHhCceecccccCCccceeEEEEcCCCEEEEEEeCCCCCCCCCHHHHHH
Confidence 67788999999999 79999998 899999999964 59999999999999998763 23344554443
|
| >1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.81 E-value=4.3e-20 Score=192.98 Aligned_cols=137 Identities=19% Similarity=0.241 Sum_probs=121.7
Q ss_pred CCCCCCCCCccccCCC--CCc---eeeccccc-CCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCC
Q 001380 425 KTTPIVPEFPAKLDWL--NTA---PLQFRRDL-KGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKF 497 (1089)
Q Consensus 425 ~~g~~~P~f~~~~~~~--~g~---~~~l~~~~-~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~ 497 (1089)
.+|+++|+|++. +. +|+ ++++ +++ +||++||+|| ++||++|+.++|.|++++++|++.++.+|+|++
T Consensus 2 ~~G~~~P~f~l~--~~~~~G~~~~~v~l-~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~--- 75 (198)
T 1zof_A 2 VVTKLAPDFKAP--AVLGNNEVDEHFEL-SKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSI--- 75 (198)
T ss_dssp CTTSBCCCCEEE--EECTTSCEEEEEET-TTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEES---
T ss_pred CCCCcCCceEee--cccCCCcccceEEH-HHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEEC---
Confidence 579999999964 45 788 9999 888 9999999999 999999999999999999999888899999986
Q ss_pred CChhcHHHHHHHHHH-------cCCccceeecCChhHHHHhCCC-----ceeEEEEECCCCcEEEEecCCC----chhhH
Q 001380 498 DNEKDLEAIRNAVLR-------YGISHPVVNDGDMNLWRELGVN-----SWPTFAVVGPNGKLLAQLAGEG----HRKDL 561 (1089)
Q Consensus 498 ~~~~~~~~~~~~~~~-------~~~~~~v~~d~~~~l~~~~~v~-----~~Pt~~lid~~G~i~~~~~G~~----~~~~l 561 (1089)
++.+.+++|+++ ++++|+++.|.+.++++.|++. ++|++||||++|+|++++.|.. +.+++
T Consensus 76 ---d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l 152 (198)
T 1zof_A 76 ---DSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEM 152 (198)
T ss_dssp ---SCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHH
T ss_pred ---CCHHHHHHHHHhhhhcccccCceeEEEECCchHHHHHhCCcccCCcccceEEEECCCCEEEEEEecCCCCCCCHHHH
Confidence 346788889988 8999999999999999999999 9999999999999999988765 56777
Q ss_pred HHHHHHHHH
Q 001380 562 DDLVEAALL 570 (1089)
Q Consensus 562 ~~~l~~~l~ 570 (1089)
.+.|+.+..
T Consensus 153 ~~~l~~l~~ 161 (198)
T 1zof_A 153 LRMVDALLH 161 (198)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776654
|
| >1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.81 E-value=6.9e-20 Score=183.30 Aligned_cols=139 Identities=24% Similarity=0.331 Sum_probs=121.7
Q ss_pred cCCCCCCCCCCccccCCCCC--------ceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeC
Q 001380 423 NRKTTPIVPEFPAKLDWLNT--------APLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHS 494 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g--------~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~ 494 (1089)
...+|+++|+|++. +++| +.+++ ++++||++||+||++||++|+.++|.|++++++ .++.+++|++
T Consensus 7 ~~~~g~~~p~f~l~--~~~g~~~~~~~~~~~~l-~~~~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~---~~v~~v~v~~ 80 (156)
T 1kng_A 7 SALIGRPAPQTALP--PLEGLQADNVQVPGLDP-AAFKGKVSLVNVWASWCVPCHDEAPLLTELGKD---KRFQLVGINY 80 (156)
T ss_dssp -----CBCCCCCBC--CCTTCEETTEECCCBCG-GGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTC---TTSEEEEEEE
T ss_pred hHHhCCCCCCceee--eccCcccccccCceech-HHhCCCEEEEEEEcccCHhHHHHHHHHHHHHhc---CCeEEEEEEC
Confidence 45789999999964 5588 89999 899999999999999999999999999999876 3589999975
Q ss_pred CCCCChhcHHHHHHHHHHcCCccc-eeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHHh
Q 001380 495 AKFDNEKDLEAIRNAVLRYGISHP-VVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFY 572 (1089)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~-v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~~ 572 (1089)
+++.+.+++++++++++|+ +..|.+.++++.|++.++|++++||++|+++.++.|..+.+.+.+.|+.+++..
T Consensus 81 -----~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~l~~~ 154 (156)
T 1kng_A 81 -----KDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPETFVVGREGTIVYKLVGPITPDNLRSVLLPQMEKA 154 (156)
T ss_dssp -----SCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSCEEEEECTTSBEEEEEESCCCHHHHHHTHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcCccCeEEEEcCCCCEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 4678899999999999998 888999999999999999999999999999999999999999999999888764
|
| >1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.81 E-value=9.1e-20 Score=191.08 Aligned_cols=141 Identities=16% Similarity=0.177 Sum_probs=122.3
Q ss_pred cCCCCCCCCCCccccCCCCC--ceeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCC
Q 001380 423 NRKTTPIVPEFPAKLDWLNT--APLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDN 499 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g--~~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~ 499 (1089)
...+|+++|+|++.....+| +++++ ++++||++||+|| ++||++|+.++|.|++++++|++.++.+|+|++
T Consensus 5 ~~~~G~~aP~f~l~~~~~~g~~~~v~l-~~~~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~----- 78 (202)
T 1uul_A 5 EAEDLHPAPDFNETALMPNGTFKKVAL-TSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSM----- 78 (202)
T ss_dssp CCCTTSBCCCCEEEEECTTSCEEEEEG-GGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEES-----
T ss_pred cccCCCcCCCcEeeeeecCCCccEEEH-HHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeC-----
Confidence 45789999999975321167 89999 9999999999999 999999999999999999999988999999986
Q ss_pred hhcHHHHHHHHHHc-------CCccceeecCChhHHHHhCCC------ceeEEEEECCCCcEEEEecCCCc----hhhHH
Q 001380 500 EKDLEAIRNAVLRY-------GISHPVVNDGDMNLWRELGVN------SWPTFAVVGPNGKLLAQLAGEGH----RKDLD 562 (1089)
Q Consensus 500 ~~~~~~~~~~~~~~-------~~~~~v~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~G~~~----~~~l~ 562 (1089)
++.+.+++|++++ +++||++.|.+.++++.|++. ++|++||||++|+|++++.|... .+++.
T Consensus 79 -D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ell 157 (202)
T 1uul_A 79 -DSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEAL 157 (202)
T ss_dssp -SCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHH
T ss_pred -CCHHHHHHHHHHHHhhCCCCCCceeEEECCchHHHHHcCCccCCCCceeeEEEEECCCCEEEEEEeCCCCCCCCHHHHH
Confidence 3567788999988 889999999999999999999 99999999999999999877543 46777
Q ss_pred HHHHHHHH
Q 001380 563 DLVEAALL 570 (1089)
Q Consensus 563 ~~l~~~l~ 570 (1089)
+.|+.+..
T Consensus 158 ~~l~~l~~ 165 (202)
T 1uul_A 158 RLVKAFQF 165 (202)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhh
Confidence 77776654
|
| >2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4.8e-20 Score=194.38 Aligned_cols=139 Identities=14% Similarity=0.176 Sum_probs=122.1
Q ss_pred cCCCCCCCCCCccccCCC--CC--ceeeccccc-CCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCC
Q 001380 423 NRKTTPIVPEFPAKLDWL--NT--APLQFRRDL-KGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAK 496 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~--~g--~~~~l~~~~-~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~ 496 (1089)
...+|+++|+|++. +. +| +++++ +++ +||++||+|| ++||++|+.++|.|++++++|++.++.||+|++
T Consensus 20 ~l~~G~~aP~f~l~--~~~~~G~~~~v~l-~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~-- 94 (213)
T 2i81_A 20 PTYVGKEAPFFKAE--AVFGDNSFGEVNL-TQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSV-- 94 (213)
T ss_dssp CCCBTSBCCCCEEE--EECTTSCEEEEEG-GGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEES--
T ss_pred cccCCCcCCCeEee--ccccCCceeEEeH-HHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC--
Confidence 45789999999964 44 78 89999 899 9999999999 999999999999999999999888899999986
Q ss_pred CCChhcHHHHHHHHHHc-------CCccceeecCChhHHHHhCCC-----ceeEEEEECCCCcEEEEecCCC----chhh
Q 001380 497 FDNEKDLEAIRNAVLRY-------GISHPVVNDGDMNLWRELGVN-----SWPTFAVVGPNGKLLAQLAGEG----HRKD 560 (1089)
Q Consensus 497 ~~~~~~~~~~~~~~~~~-------~~~~~v~~d~~~~l~~~~~v~-----~~Pt~~lid~~G~i~~~~~G~~----~~~~ 560 (1089)
++.+.+++|++++ +++||++.|.+.++++.|++. .+|++||||++|+|++++.|.. +.++
T Consensus 95 ----D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~e 170 (213)
T 2i81_A 95 ----DSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLFDDSVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDE 170 (213)
T ss_dssp ----SCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHH
T ss_pred ----CCHHHHHHHHHHHHhhCCccCCCceEEECCchHHHHHhCCccccCCcccEEEEECCCCEEEEEEecCCCCCCCHHH
Confidence 3567888899888 889999999999999999999 9999999999999999987653 3667
Q ss_pred HHHHHHHHHH
Q 001380 561 LDDLVEAALL 570 (1089)
Q Consensus 561 l~~~l~~~l~ 570 (1089)
+.+.|+.+..
T Consensus 171 ll~~l~~l~~ 180 (213)
T 2i81_A 171 ILRIIDAIQH 180 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777776553
|
| >3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.7e-20 Score=197.16 Aligned_cols=139 Identities=14% Similarity=0.177 Sum_probs=117.1
Q ss_pred ccCCCCCCCCCCcccc-CCCCCceeecccccCCCEEEEEEec-CCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCC
Q 001380 422 ENRKTTPIVPEFPAKL-DWLNTAPLQFRRDLKGKVVVLDFWT-YCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDN 499 (1089)
Q Consensus 422 ~~~~~g~~~P~f~~~~-~~~~g~~~~l~~~~~gk~vll~Fwa-~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~ 499 (1089)
....+|+++|+|+++. .+.+|++++| ++++||++||+||+ +||++|+.++|.|++++++|++.++.||+|++
T Consensus 46 ~~l~vG~~aPdF~l~~~~d~~G~~vsL-sd~~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~----- 119 (240)
T 3qpm_A 46 SKAKISKPAPQWEGTAVINGEFKELKL-SDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSV----- 119 (240)
T ss_dssp CSCCTTSBCCCCEEEEEETTEEEEEEG-GGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEES-----
T ss_pred CcCCCCCCCCCcEeeeeeCCCCcEEEH-HHhCCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEEC-----
Confidence 3567999999999652 2335679999 99999999999998 99999999999999999999988999999986
Q ss_pred hhcHHHHHHHHHHc-------CCccceeecCChhHHHHhCCC------ceeEEEEECCCCcEEEEecCCCc----hhhHH
Q 001380 500 EKDLEAIRNAVLRY-------GISHPVVNDGDMNLWRELGVN------SWPTFAVVGPNGKLLAQLAGEGH----RKDLD 562 (1089)
Q Consensus 500 ~~~~~~~~~~~~~~-------~~~~~v~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~G~~~----~~~l~ 562 (1089)
++.+..++|++++ +++||++.|.+.++++.||+. .+|++||||++|+|++.+.+... .+++.
T Consensus 120 -D~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~~~~g~~~p~~flID~~G~I~~~~~~~~~~~~~~~eil 198 (240)
T 3qpm_A 120 -DSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSVDETL 198 (240)
T ss_dssp -SCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHH
T ss_pred -CCHHHHHHHHHHHHhhcCCCCCceeEEeCchHHHHHHhCCccccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHH
Confidence 4566777888876 899999999999999999998 78999999999999999766432 34444
Q ss_pred HHHHH
Q 001380 563 DLVEA 567 (1089)
Q Consensus 563 ~~l~~ 567 (1089)
+.|+.
T Consensus 199 ~~l~~ 203 (240)
T 3qpm_A 199 RLVQA 203 (240)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 1.65A {Bacteroides thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A | Back alignment and structure |
|---|
Probab=99.81 E-value=6.4e-20 Score=196.24 Aligned_cols=179 Identities=17% Similarity=0.236 Sum_probs=138.4
Q ss_pred CCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhc----------C-CCHHHHHHHHHhhcCCCCCCHHH
Q 001380 77 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFM----------G-TGEANFLGGVASVKGVKGFDSEA 145 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~~~~~~~~~ 145 (1089)
+++++|+||+||||+++.. ..+.+.++++|+....+.+..+. + .+...+...+....+... ..+.
T Consensus 26 ~~ik~viFD~DGTL~d~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~ 101 (229)
T 4dcc_A 26 KGIKNLLIDLGGVLINLDR---ERCIENFKKIGFQNIEEKFCTHQLDGIFLQQEKGLITPAEFRDGIREMMGKMV-SDKQ 101 (229)
T ss_dssp CCCCEEEECSBTTTBCBCH---HHHHHHHHHHTCTTHHHHHHHTHHHHHHHHHHTTCSCHHHHHHHHHHHHTSCC-CHHH
T ss_pred CCCCEEEEeCCCeEEeCCh---HHHHHHHHHhCCCcHHHHHHHhcCcHHHHHHHCCCCCHHHHHHHHHHHhCCCC-CHHH
Confidence 3589999999999999773 45667778888875444333321 1 344555555555444332 2222
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHH------HHCCCCCCCccEEEEcCCcc
Q 001380 146 AKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANL------AAAGLPVSMFDAIVSADAFE 219 (1089)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l------~~~gl~~~~fd~i~~~~~~~ 219 (1089)
.. +.+.+.+ ..++||+.++|+.|+++ ++++|+||+.....+.++ +.+|+. .+||.++++++++
T Consensus 102 ~~----~~~~~~~-----~~~~~~~~~~l~~l~~~-~~~~i~Sn~~~~~~~~~~~~l~~~~~~~l~-~~fd~i~~~~~~~ 170 (229)
T 4dcc_A 102 ID----AAWNSFL-----VDIPTYKLDLLLKLREK-YVVYLLSNTNDIHWKWVCKNAFPYRTFKVE-DYFEKTYLSYEMK 170 (229)
T ss_dssp HH----HHHHTTB-----CCCCHHHHHHHHHHTTT-SEEEEEECCCHHHHHHHHHHTSCBTTBCHH-HHCSEEEEHHHHT
T ss_pred HH----HHHHHHH-----HhccHHHHHHHHHHHhc-CcEEEEECCChHHHHHHHhhhhhhccCCHH-HhCCEEEeecccC
Confidence 22 2222221 14679999999999999 999999999998888655 667885 8899999999999
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCC
Q 001380 220 NLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLS 270 (1089)
Q Consensus 220 ~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~ 270 (1089)
..||+|++|+.+++++|++|++|+||||+.+|+++|+++|+.+++|+++..
T Consensus 171 ~~KP~~~~~~~~~~~~g~~~~~~~~vGD~~~Di~~a~~aG~~~i~v~~~~~ 221 (229)
T 4dcc_A 171 MAKPEPEIFKAVTEDAGIDPKETFFIDDSEINCKVAQELGISTYTPKAGED 221 (229)
T ss_dssp CCTTCHHHHHHHHHHHTCCGGGEEEECSCHHHHHHHHHTTCEEECCCTTCC
T ss_pred CCCCCHHHHHHHHHHcCCCHHHeEEECCCHHHHHHHHHcCCEEEEECCHHH
Confidence 999999999999999999999999999999999999999999999998753
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-17 Score=184.71 Aligned_cols=246 Identities=15% Similarity=0.203 Sum_probs=187.7
Q ss_pred CCCCCCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEE
Q 001380 594 RLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYV 673 (1089)
Q Consensus 594 ~~~~~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyV 673 (1089)
+.+...+.+|.++++++.++.||+++...++|.++++++. ...+... ...|.+|+++++|+ +|+
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~--------------~~~~~~l~~~~dg~-l~v 84 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHP--------------SHHQNGHCLNKQGH-LIA 84 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESS--------------CSSEEEEEECTTCC-EEE
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECC--------------CCCcceeeECCCCc-EEE
Confidence 4455678899999999855569999999999999999987 5555433 13689999999998 999
Q ss_pred EECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC-----------------C
Q 001380 674 ADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA-----------------G 736 (1089)
Q Consensus 674 aD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~-----------------~ 736 (1089)
++..++.|.++|+.++.++.+..... ...+..|.+++++++| .+|+++. +
T Consensus 85 ~~~~~~~i~~~d~~~g~~~~~~~~~~------------~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~ 151 (296)
T 3e5z_A 85 CSHGLRRLERQREPGGEWESIADSFE------------GKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELP 151 (296)
T ss_dssp EETTTTEEEEECSTTCCEEEEECEET------------TEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSS
T ss_pred EecCCCeEEEEcCCCCcEEEEeeccC------------CCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCC
Confidence 99988999999998888777653110 1235689999999988 7999875 2
Q ss_pred CcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcC-CCCe-EEEecCC
Q 001380 737 QHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLK-TGGS-RLLAGGD 814 (1089)
Q Consensus 737 ~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~-~~~~-~~~~g~~ 814 (1089)
.+.|+++++. +.+..+. ..+..|+||+++++|+.| ++++.+++|++++.+ ++.. ...
T Consensus 152 ~~~l~~~~~~-g~~~~~~---------------~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~---- 210 (296)
T 3e5z_A 152 GRWVFRLAPD-GTLSAPI---------------RDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQG---- 210 (296)
T ss_dssp SCEEEEECTT-SCEEEEE---------------CCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEE----
T ss_pred CcEEEEECCC-CCEEEee---------------cCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCC----
Confidence 4689999987 6666554 224578999999999666 999999999999986 3333 100
Q ss_pred CCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCC
Q 001380 815 PIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEP 894 (1089)
Q Consensus 815 ~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P 894 (1089)
..+.. ....|.++++|++|++||++ ++.|.++|+++..+.++... -. |
T Consensus 211 -----~~~~~----------~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g~~~~~~~~~--------------~~-~ 258 (296)
T 3e5z_A 211 -----VHFTV----------EPGKTDGLRVDAGGLIWASA--GDGVHVLTPDGDELGRVLTP--------------QT-T 258 (296)
T ss_dssp -----EEECC----------SSSCCCSEEEBTTSCEEEEE--TTEEEEECTTSCEEEEEECS--------------SC-C
T ss_pred -----eEeeC----------CCCCCCeEEECCCCCEEEEc--CCeEEEECCCCCEEEEEECC--------------CC-c
Confidence 00000 13468899999999999999 78999999997777766531 12 8
Q ss_pred ceEEEc-cCC-cEEEEECCCCEEEEEeCCCC
Q 001380 895 AGIIEA-QNG-NLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 895 ~gi~vd-~~G-~lyVad~~n~~I~~~~~~~~ 923 (1089)
..++++ ++| .|||+.. +.|.++++++.
T Consensus 259 ~~~~f~~~d~~~L~v~t~--~~l~~~~~~~~ 287 (296)
T 3e5z_A 259 SNLCFGGPEGRTLYMTVS--TEFWSIETNVR 287 (296)
T ss_dssp CEEEEESTTSCEEEEEET--TEEEEEECSCC
T ss_pred eeEEEECCCCCEEEEEcC--CeEEEEEcccc
Confidence 899995 565 5999874 68999998876
|
| >3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4.4e-20 Score=187.22 Aligned_cols=136 Identities=15% Similarity=0.033 Sum_probs=115.3
Q ss_pred ccCCCCCCCCCCccccCCCCCceeecccc-cCCCEEEEE-EecCCCcchh-hhhhhHHHHHHHcCCCCEEEEE-EeCCCC
Q 001380 422 ENRKTTPIVPEFPAKLDWLNTAPLQFRRD-LKGKVVVLD-FWTYCCINCM-HVLPDLEFLEKKYKDMPFTVVG-VHSAKF 497 (1089)
Q Consensus 422 ~~~~~g~~~P~f~~~~~~~~g~~~~l~~~-~~gk~vll~-Fwa~wC~~C~-~~~p~l~~l~~~~~~~~v~vi~-v~~~~~ 497 (1089)
....+|+++|+|++. .+.+|++++| ++ ++||++||+ ||++||++|+ .|+|.|++++++|+++|+.+|+ |+.
T Consensus 13 ~~~~vG~~aPdf~l~-~~~~g~~v~L-~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~--- 87 (173)
T 3mng_A 13 APIKVGDAIPAVEVF-EGEPGNKVNL-AELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSV--- 87 (173)
T ss_dssp CCCCTTCBCCCCEEE-CSSTTCEEEH-HHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEES---
T ss_pred CCCCCCCCCCCeEee-eCCCCCEEEh-HHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcC---
Confidence 456899999999965 1569999999 88 699976655 5599999999 6999999999999999999997 875
Q ss_pred CChhcHHHHHHHHHHcCCc--cceeecCChhHHHHhCCC-------------ceeEEEEECCCCcEEEEecCCC----ch
Q 001380 498 DNEKDLEAIRNAVLRYGIS--HPVVNDGDMNLWRELGVN-------------SWPTFAVVGPNGKLLAQLAGEG----HR 558 (1089)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~--~~v~~d~~~~l~~~~~v~-------------~~Pt~~lid~~G~i~~~~~G~~----~~ 558 (1089)
++.+..++|+++++++ ||++.|.+++++++||+. ..|++|||| +|+|++.+.+.. +.
T Consensus 88 ---D~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~~~~~~~~g~~~~~r~tfvID-dG~I~~~~v~~~~~g~~~ 163 (173)
T 3mng_A 88 ---NDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQ-DGIVKALNVEPDGTGLTC 163 (173)
T ss_dssp ---SCHHHHHHHHHHTTCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEE-TTEEEEEEECTTSSCSST
T ss_pred ---CCHHHHHHHHHHhCCCCceEEEECCChHHHHHhCCCcccccccccCCcceEEEEEEEE-CCEEEEEEEeCCCCCcch
Confidence 5678899999999998 999999999999999986 359999999 999999988754 34
Q ss_pred hhHHHHHH
Q 001380 559 KDLDDLVE 566 (1089)
Q Consensus 559 ~~l~~~l~ 566 (1089)
.+.+++|+
T Consensus 164 ~~~~~vl~ 171 (173)
T 3mng_A 164 SLAPNIIS 171 (173)
T ss_dssp TSHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
|
| >3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.81 E-value=5.4e-20 Score=186.38 Aligned_cols=121 Identities=13% Similarity=0.091 Sum_probs=109.4
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChh
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEK 501 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~ 501 (1089)
...+|+++|+|+++ +.+|+++++ ++++||++||+|| ++||++|+.++|.|++++++ .++.+|+|+. +
T Consensus 19 ~l~~G~~aP~f~l~--~~~G~~~~l-~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~---~~~~vv~is~------d 86 (166)
T 3p7x_A 19 QINEGDFAPDFTVL--DNDLNQVTL-ADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK---EEGIVLTISA------D 86 (166)
T ss_dssp CCCTTSBCCCCEEE--CTTSCEEEG-GGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT---TTSEEEEEES------S
T ss_pred cCCCCCCCCCeEEE--cCCCCEEeH-HHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc---CCCEEEEEEC------C
Confidence 45789999999964 569999999 9999999999999 78999999999999999877 5799999975 5
Q ss_pred cHHHHHHHHHHcCC-ccceeecC-ChhHHHHhCCCc------eeEEEEECCCCcEEEEecCC
Q 001380 502 DLEAIRNAVLRYGI-SHPVVNDG-DMNLWRELGVNS------WPTFAVVGPNGKLLAQLAGE 555 (1089)
Q Consensus 502 ~~~~~~~~~~~~~~-~~~v~~d~-~~~l~~~~~v~~------~Pt~~lid~~G~i~~~~~G~ 555 (1089)
+.+.+++|++++++ +||++.|. +.++++.||+.. .|++||||++|+|++++.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~~~ 148 (166)
T 3p7x_A 87 LPFAQKRWCASAGLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKEIVS 148 (166)
T ss_dssp CHHHHHHHHHHHTCSSCEEEECTTTCHHHHHHTCEETTTTEECCEEEEECTTCBEEEEEECS
T ss_pred CHHHHHHHHHHcCCCceEEccCCchhHHHHHhCCccccCCceeeEEEEECCCCeEEEEEEcC
Confidence 67889999999999 89999999 899999999985 89999999999999986543
|
| >2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.5e-20 Score=185.58 Aligned_cols=133 Identities=14% Similarity=0.018 Sum_probs=114.0
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChh
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEK 501 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~ 501 (1089)
...+|+++|+|++. +.+|+++++ ++++||++||+|| ++||++|+.++|.|++++++| .++.+|+|+. +
T Consensus 20 ~l~~g~~~P~f~l~--~~~G~~~~l-~~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~--~~v~vv~Is~------d 88 (171)
T 2yzh_A 20 ELKVGDRAPEAVVV--TKDLQEKIV-GGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGM--EGVDVTVVSM------D 88 (171)
T ss_dssp CCCTTSBCCCEEEE--ETTSCEEEE-SSCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TTEEEEEEES------S
T ss_pred cCCCCCcCCceEEE--CCCCCEeeH-HHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHc--CCceEEEEeC------C
Confidence 35689999999965 559999999 9999999999999 899999999999999999999 6799999986 3
Q ss_pred cHHHHHHHHHHcCC-ccceeec-CChhHHHHhCCCc---------eeEEEEECCCCcEEEEecCC-----CchhhHHHHH
Q 001380 502 DLEAIRNAVLRYGI-SHPVVND-GDMNLWRELGVNS---------WPTFAVVGPNGKLLAQLAGE-----GHRKDLDDLV 565 (1089)
Q Consensus 502 ~~~~~~~~~~~~~~-~~~v~~d-~~~~l~~~~~v~~---------~Pt~~lid~~G~i~~~~~G~-----~~~~~l~~~l 565 (1089)
+.+.+++|++++++ +|+++.| .+.++ +.|++.. +|++||||++|+|++.+.|. .+.+++.+.|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~ll~~l 167 (171)
T 2yzh_A 89 LPFAQKRFCESFNIQNVTVASDFRYRDM-EKYGVLIGEGALKGILARAVFIIDKEGKVAYVQLVPEITEEPNYDEVVNKV 167 (171)
T ss_dssp CHHHHHHHHHHTTCCSSEEEECTTTCGG-GGGTCBBCSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCCHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCeEEeecCccCcH-HHhCCEecccccCCceeeEEEEEcCCCeEEEEEeCCCcCCCCCHHHHHHHH
Confidence 57788999999999 8999999 88899 9999862 69999999999999998753 2344454444
Q ss_pred HH
Q 001380 566 EA 567 (1089)
Q Consensus 566 ~~ 567 (1089)
++
T Consensus 168 ~~ 169 (171)
T 2yzh_A 168 KE 169 (171)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-17 Score=188.83 Aligned_cols=248 Identities=13% Similarity=0.110 Sum_probs=188.6
Q ss_pred CCCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCC
Q 001380 601 KFPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENH 679 (1089)
Q Consensus 601 ~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~ 679 (1089)
..|.+++++ ++++||+....++|.++|.. ++.+.++... ..|.+|+++++| .+||++..++
T Consensus 44 ~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~---------------~~p~~i~~~~~g-~lyv~~~~~~ 105 (328)
T 3dsm_A 44 DVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRITGF---------------TSPRYIHFLSDE-KAYVTQIWDY 105 (328)
T ss_dssp SCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEECC---------------SSEEEEEEEETT-EEEEEEBSCS
T ss_pred ccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcCCC---------------CCCcEEEEeCCC-eEEEEECCCC
Confidence 457888886 78999999999999999987 7887777422 379999999888 5999998889
Q ss_pred EEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC-CcEEEEEECCCCeEEEEeCCCc
Q 001380 680 ALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG-QHQIWEHSTVDGVTRAFSGDGY 758 (1089)
Q Consensus 680 ~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~-~~~I~~~~~~~g~~~~~~g~g~ 758 (1089)
.|.++|+.++++......|... .....|.+|++ +++.|||++.+ .+.|.++|+.++.+......
T Consensus 106 ~v~~iD~~t~~~~~~i~~g~~~-----------~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-- 170 (328)
T 3dsm_A 106 RIFIINPKTYEITGYIECPDMD-----------MESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI-- 170 (328)
T ss_dssp EEEEEETTTTEEEEEEECTTCC-----------TTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC--
T ss_pred eEEEEECCCCeEEEEEEcCCcc-----------ccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc--
Confidence 9999999998876544333210 11347999999 35699999985 88999999998876543311
Q ss_pred cccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCC----------CeEEEEEcCCCCeEEEecCCCCCCCCccccCCCC
Q 001380 759 ERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSES----------SSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRD 828 (1089)
Q Consensus 759 ~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~----------~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~d 828 (1089)
-..|.+++++++| ++|+++.+. ++|.++++.++.+.....- + .
T Consensus 171 -------------g~~p~~i~~~~dG-~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~-----------~--~ 223 (328)
T 3dsm_A 171 -------------GIQPTSLVMDKYN-KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF-----------K--L 223 (328)
T ss_dssp -------------SSCBCCCEECTTS-EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC-----------C--T
T ss_pred -------------CCCccceEEcCCC-CEEEEECCCccCCccccCCceEEEEECCCCeEEEEEec-----------C--C
Confidence 1368999999998 899999876 8999999987765422110 0 0
Q ss_pred CccccccccCceEEEEccCC-cEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEcc-CCcEE
Q 001380 829 GMGSEVLLQHPLGVYCAKNG-QIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQ-NGNLF 906 (1089)
Q Consensus 829 g~~~~~~l~~P~gva~~~~G-~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~-~G~ly 906 (1089)
-.+|.+++++++| .+||++. .|.++|++++.+.... +.. .....|.||++++ +|+||
T Consensus 224 -------g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~~~~------~~~-----~~~~~p~gi~vdp~~g~ly 282 (328)
T 3dsm_A 224 -------GDWPSEVQLNGTRDTLYWINN---DIWRMPVEADRVPVRP------FLE-----FRDTKYYGLTVNPNNGEVY 282 (328)
T ss_dssp -------TCCCEEEEECTTSCEEEEESS---SEEEEETTCSSCCSSC------SBC-----CCSSCEEEEEECTTTCCEE
T ss_pred -------CCCceeEEEecCCCEEEEEcc---EEEEEECCCCceeeee------eec-----CCCCceEEEEEcCCCCeEE
Confidence 1369999999976 6999986 8999999887653110 000 0136799999997 77899
Q ss_pred EEE----CCCCEEEEEeCCCCCceEEEEe
Q 001380 907 IAD----TNNNIIRYLDLNKEEPELQTLE 931 (1089)
Q Consensus 907 Vad----~~n~~I~~~~~~~~~~~~~~l~ 931 (1089)
|++ ..+++|.+|+++++ .+.++.
T Consensus 283 va~~~~y~~~~~V~v~d~~g~--~~~~i~ 309 (328)
T 3dsm_A 283 VADAIDYQQQGIVYRYSPQGK--LIDEFY 309 (328)
T ss_dssp EEECTTSSSEEEEEEECTTCC--EEEEEE
T ss_pred EEcccccccCCEEEEECCCCC--EEEEEE
Confidence 999 88999999999965 666665
|
| >2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.5e-20 Score=186.59 Aligned_cols=124 Identities=11% Similarity=-0.007 Sum_probs=111.2
Q ss_pred CCCCCCCCCCccccCCCCCceeeccccc-CCCEEEEEEe-cCCCcchhh-hhhhHHHHHHHcCCCCE-EEEEEeCCCCCC
Q 001380 424 RKTTPIVPEFPAKLDWLNTAPLQFRRDL-KGKVVVLDFW-TYCCINCMH-VLPDLEFLEKKYKDMPF-TVVGVHSAKFDN 499 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~~~~l~~~~-~gk~vll~Fw-a~wC~~C~~-~~p~l~~l~~~~~~~~v-~vi~v~~~~~~~ 499 (1089)
..+|+++|+|++. .+.+|++++| +++ +||++||+|| ++||++|+. |+|.|++++++|+++++ .||+|+.
T Consensus 3 l~~G~~aP~f~l~-~~~~G~~v~L-~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~----- 75 (167)
T 2wfc_A 3 IKEGDKLPAVTVF-GATPNDKVNM-AELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAV----- 75 (167)
T ss_dssp CCTTCBCCCCEEE-SSSTTCEEEH-HHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEES-----
T ss_pred CCCCCcCCCcEee-cCCCCcEEeH-HHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeC-----
Confidence 4689999999965 1569999999 888 9999999986 999999999 99999999999988899 9999985
Q ss_pred hhcHHHHHHHHHHcCCc--cceeecCChhHHHHhCCCce-----------eEEEEECCCCcEEEEecCCC
Q 001380 500 EKDLEAIRNAVLRYGIS--HPVVNDGDMNLWRELGVNSW-----------PTFAVVGPNGKLLAQLAGEG 556 (1089)
Q Consensus 500 ~~~~~~~~~~~~~~~~~--~~v~~d~~~~l~~~~~v~~~-----------Pt~~lid~~G~i~~~~~G~~ 556 (1089)
++.+.+++|+++++++ ||++.|.++++++.||+... |++||| ++|+|++.+.+..
T Consensus 76 -d~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~gv~~~~~~~~g~~~~~p~t~lI-~~G~I~~~~~~~~ 143 (167)
T 2wfc_A 76 -NDSFVMDAWGKAHGADDKVQMLADPGGAFTKAVDMELDLSAVLGNVRSKRYSLVI-EDGVVTKVNVEPD 143 (167)
T ss_dssp -SCHHHHHHHHHHTTCTTTSEEEECTTSHHHHHTTCEECCHHHHSSCEECCEEEEE-ETTEEEEEEECTT
T ss_pred -CCHHHHHHHHHhcCCCcceEEEECCCCcHHHHcCCccccccccCcccceEEEEEE-eCCEEEEEEecCC
Confidence 4677899999999999 99999999999999999754 999999 9999999977653
|
| >2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.81 E-value=8e-20 Score=189.93 Aligned_cols=137 Identities=16% Similarity=0.203 Sum_probs=119.4
Q ss_pred CCCCCCCCCccccCCC--CC--ceeeccccc-CCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCC
Q 001380 425 KTTPIVPEFPAKLDWL--NT--APLQFRRDL-KGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFD 498 (1089)
Q Consensus 425 ~~g~~~P~f~~~~~~~--~g--~~~~l~~~~-~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~ 498 (1089)
++|+++|+|++. +. +| +.+++ +++ +||++||+|| ++||++|+.++|.|++++++|++.++.+|+|++
T Consensus 1 ~~G~~aP~f~l~--~~~~~G~~~~~~l-~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~---- 73 (192)
T 2h01_A 1 AFQGQAPSFKAE--AVFGDNTFGEVSL-SDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSV---- 73 (192)
T ss_dssp CCSSBCCCCEEE--EECTTSCEEEEEG-GGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEES----
T ss_pred CCCCcCCCcEeE--eeecCCceeEEeH-HHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEe----
Confidence 378999999964 44 78 89999 888 9999999999 999999999999999999999878899999986
Q ss_pred ChhcHHHHHHHHHHc-------CCccceeecCChhHHHHhCCC-----ceeEEEEECCCCcEEEEecCCC----chhhHH
Q 001380 499 NEKDLEAIRNAVLRY-------GISHPVVNDGDMNLWRELGVN-----SWPTFAVVGPNGKLLAQLAGEG----HRKDLD 562 (1089)
Q Consensus 499 ~~~~~~~~~~~~~~~-------~~~~~v~~d~~~~l~~~~~v~-----~~Pt~~lid~~G~i~~~~~G~~----~~~~l~ 562 (1089)
++.+.+++|++++ +++|+++.|.+.++++.|++. .+|++||||++|+|++.+.|.. +.+++.
T Consensus 74 --d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~g~~~P~~~liD~~G~i~~~~~g~~~~~~~~~~l~ 151 (192)
T 2h01_A 74 --DSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEIL 151 (192)
T ss_dssp --SCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHH
T ss_pred --CCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHHHHhCCcCcCCceeeEEEEEcCCCEEEEEEeCCCCCCCCHHHHH
Confidence 3567888899888 889999999999999999999 8999999999999999987743 355666
Q ss_pred HHHHHHHH
Q 001380 563 DLVEAALL 570 (1089)
Q Consensus 563 ~~l~~~l~ 570 (1089)
+.|+.+..
T Consensus 152 ~~l~~l~~ 159 (192)
T 2h01_A 152 RLIDALQH 159 (192)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 66665543
|
| >3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A | Back alignment and structure |
|---|
Probab=99.81 E-value=9.1e-20 Score=190.27 Aligned_cols=134 Identities=12% Similarity=0.084 Sum_probs=116.3
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChh
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEK 501 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~ 501 (1089)
...+|+++|+|++. +.+|++++| ++++||++||+|| ++||++|+.++|.|++++++| +++.||+|+. +
T Consensus 51 ~l~~G~~aPdf~l~--d~~G~~v~L-~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~--~~v~vv~Is~------D 119 (200)
T 3zrd_A 51 LPQIGDKAKDFTLV--AKDLSDVAL-SSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL--ENTVVLCISS------D 119 (200)
T ss_dssp CCCTTCBCCCCEEE--CTTSCEEEG-GGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS--TTEEEEEEES------S
T ss_pred cCCCCCCCCCeEEE--CCCCCEEcH-HHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh--CCCEEEEEEC------C
Confidence 45789999999964 569999999 9999999999999 689999999999999999999 5799999985 4
Q ss_pred cHHHHHHHHHHcCC-ccceeecC-ChhHHHHhCCC---------ceeEEEEECCCCcEEEEecCC--CchhhHHHHHHH
Q 001380 502 DLEAIRNAVLRYGI-SHPVVNDG-DMNLWRELGVN---------SWPTFAVVGPNGKLLAQLAGE--GHRKDLDDLVEA 567 (1089)
Q Consensus 502 ~~~~~~~~~~~~~~-~~~v~~d~-~~~l~~~~~v~---------~~Pt~~lid~~G~i~~~~~G~--~~~~~l~~~l~~ 567 (1089)
+.+.+++|++++++ +|+++.|. +.++++.||+. ..|++||||++|+|++.+.+. ....++++.++.
T Consensus 120 ~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~ygv~~~~~~~~g~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~~~l~~ 198 (200)
T 3zrd_A 120 LPFAQSRFCGAEGLSNVITLSTLRGADFKQAYGVAITEGPLAGLTARAVVVLDGQDNVIYSELVNEITTEPNYDAALAA 198 (200)
T ss_dssp CHHHHTTCTTTTTCTTEEEEETTSCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCceEEecCchHHHHHHhCceeecccCCCccccEEEEECCCCeEEEEEecCCcccCCCHHHHHHh
Confidence 67889999999999 99999999 99999999996 369999999999999997654 234445555543
|
| >1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-19 Score=192.45 Aligned_cols=141 Identities=18% Similarity=0.182 Sum_probs=120.7
Q ss_pred cCCCCCCCCCCcccc-CCCCCceeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCCh
Q 001380 423 NRKTTPIVPEFPAKL-DWLNTAPLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNE 500 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~-~~~~g~~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~ 500 (1089)
...+|+++|+|++.. .+.+|+++++ ++++||++||+|| ++||++|+.++|.|++++++|++.++.||+|++
T Consensus 26 ~l~~G~~aP~f~l~~~~~~~g~~v~l-~d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~------ 98 (220)
T 1zye_A 26 APAVTQHAPYFKGTAVVSGEFKEISL-DDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSV------ 98 (220)
T ss_dssp -CCTTSBCCCCEEEEECSSSEEEEEG-GGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEES------
T ss_pred cccCCCCCCCcEEEeeeCCCCcEEEH-HHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC------
Confidence 457899999999752 2346889999 9999999999999 999999999999999999999888899999986
Q ss_pred hcHHHHHHHHHHc-------CCccceeecCChhHHHHhCCC------ceeEEEEECCCCcEEEEecCCC----chhhHHH
Q 001380 501 KDLEAIRNAVLRY-------GISHPVVNDGDMNLWRELGVN------SWPTFAVVGPNGKLLAQLAGEG----HRKDLDD 563 (1089)
Q Consensus 501 ~~~~~~~~~~~~~-------~~~~~v~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~G~~----~~~~l~~ 563 (1089)
++.+..++|++++ +++||++.|.+.++++.|++. .+|++||||++|+|++++.|.. +.+++.+
T Consensus 99 D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~~ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~~~~~~~~ell~ 178 (220)
T 1zye_A 99 DSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLR 178 (220)
T ss_dssp SCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHHHHhCCeecCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHH
Confidence 3456778888877 889999999999999999999 9999999999999999987753 3466666
Q ss_pred HHHHHHH
Q 001380 564 LVEAALL 570 (1089)
Q Consensus 564 ~l~~~l~ 570 (1089)
.|+.+..
T Consensus 179 ~l~~l~~ 185 (220)
T 1zye_A 179 LVKAFQF 185 (220)
T ss_dssp HHHHHHH
T ss_pred HHHHhhh
Confidence 6666543
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-19 Score=182.71 Aligned_cols=126 Identities=21% Similarity=0.386 Sum_probs=114.8
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhc
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKD 502 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~ 502 (1089)
...+|+++|+|++. +++|+.+++ ++++||++||+||++||++|+.++|.|++++++|++.++.+|+|+.+.
T Consensus 14 ~~~~G~~~p~f~l~--~~~g~~~~l-~~~~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~------ 84 (158)
T 3hdc_A 14 LVRTGALAPNFKLP--TLSGENKSL-AQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEK------ 84 (158)
T ss_dssp CCCTTSBCCCCEEE--CTTSCEEES-GGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSS------
T ss_pred ccCCCCcCCCceeE--cCCCCEEeh-HHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCH------
Confidence 46789999999964 569999999 899999999999999999999999999999999998889999997632
Q ss_pred HHHHHHHHHHcCCccceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchh
Q 001380 503 LEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRK 559 (1089)
Q Consensus 503 ~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~ 559 (1089)
.+++++++++++|+++.|.+.++++.|+|.++|++||||++|+++.++.|....+
T Consensus 85 --~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~G~~~~~ 139 (158)
T 3hdc_A 85 --RFPEKYRRAPVSFNFLSDATGQVQQRYGANRLPDTFIVDRKGIIRQRVTGGIEWD 139 (158)
T ss_dssp --SCCGGGGGCCCSCEEEECTTSHHHHHTTCCSSSEEEEECTTSBEEEEEESCCCTT
T ss_pred --HHHHHHHHcCCCceEEECchHHHHHHhCCCCcceEEEEcCCCCEEEEEeCCCccc
Confidence 4678889999999999999999999999999999999999999999999976543
|
| >2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-19 Score=191.50 Aligned_cols=177 Identities=19% Similarity=0.301 Sum_probs=133.2
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCC-----------CHHHHHHHHHhhcCCCCCCHHHH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGT-----------GEANFLGGVASVKGVKGFDSEAA 146 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 146 (1089)
|+++|+||+||||+++...+. ...++++|+....+.+..+.+. ....+...+....+.. .....
T Consensus 4 m~k~iiFDlDGTL~d~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~- 78 (211)
T 2i6x_A 4 MIRNIVFDLGGVLIHLNREES---IRRFKAIGVADIEEMLDPYLQKGLFLDLESGRKSEEEFRTELSRYIGKE-LTYQQ- 78 (211)
T ss_dssp CCSEEEECSBTTTEEECHHHH---HHHHHHTTCTTHHHHTCC---CCHHHHHHHSSSCHHHHHHHHHHHHTSC-CCHHH-
T ss_pred cceEEEEeCCCeeEecchHHH---HHHHHHhCCchHHHHHHHHhCchHHHHHHcCCCCHHHHHHHHHHHhCCC-CCHHH-
Confidence 479999999999999886543 5667777876543333333322 2222333333322211 11111
Q ss_pred HHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHH------CCCCCCCccEEEEcCCccC
Q 001380 147 KKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAA------AGLPVSMFDAIVSADAFEN 220 (1089)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~------~gl~~~~fd~i~~~~~~~~ 220 (1089)
+.+.+... ...++||+.++|+.|++ |++++|+||.....++..++. +++. .+|+.++++++.+.
T Consensus 79 ---~~~~~~~~-----~~~~~~~~~~~l~~l~~-g~~~~i~t~~~~~~~~~~~~~l~~~~~~~l~-~~f~~~~~~~~~~~ 148 (211)
T 2i6x_A 79 ---VYDALLGF-----LEEISAEKFDYIDSLRP-DYRLFLLSNTNPYVLDLAMSPRFLPSGRTLD-SFFDKVYASCQMGK 148 (211)
T ss_dssp ---HHHHHGGG-----EEEECHHHHHHHHHHTT-TSEEEEEECCCHHHHHHHTSTTSSTTCCCGG-GGSSEEEEHHHHTC
T ss_pred ---HHHHHHHh-----hcccChHHHHHHHHHHc-CCeEEEEeCCCHHHHHHHHhhhccccccCHH-HHcCeEEeecccCC
Confidence 11111111 12578999999999999 999999999999999999988 7996 99999999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC
Q 001380 221 LKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL 269 (1089)
Q Consensus 221 ~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~ 269 (1089)
.||++++|.++++++|++|++|+||||+.+|+.+|+++|+.+++++++.
T Consensus 149 ~Kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~aG~~~~~~~~~~ 197 (211)
T 2i6x_A 149 YKPNEDIFLEMIADSGMKPEETLFIDDGPANVATAERLGFHTYCPDNGE 197 (211)
T ss_dssp CTTSHHHHHHHHHHHCCCGGGEEEECSCHHHHHHHHHTTCEEECCCTTC
T ss_pred CCCCHHHHHHHHHHhCCChHHeEEeCCCHHHHHHHHHcCCEEEEECCHH
Confidence 9999999999999999999999999999999999999999999998875
|
| >3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.8e-20 Score=188.35 Aligned_cols=134 Identities=16% Similarity=0.090 Sum_probs=113.9
Q ss_pred cCCCCCCCCCCccccCCC--CC-ceeecccc-cCCCEE-EEEEecCCCcchhh-hhhhHHHHHHHcCCCCEE-EEEEeCC
Q 001380 423 NRKTTPIVPEFPAKLDWL--NT-APLQFRRD-LKGKVV-VLDFWTYCCINCMH-VLPDLEFLEKKYKDMPFT-VVGVHSA 495 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~--~g-~~~~l~~~-~~gk~v-ll~Fwa~wC~~C~~-~~p~l~~l~~~~~~~~v~-vi~v~~~ 495 (1089)
...+|+++|+|++. ++ +| ++++| ++ ++||++ |++||++||++|+. |+|.|++++++|+++|+. ||+|+.
T Consensus 25 ~l~vG~~aPdf~l~--~~~~~G~~~v~L-~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~- 100 (184)
T 3uma_A 25 TIAVGDKLPNATFK--EKTADGPVEVTT-ELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAV- 100 (184)
T ss_dssp CCCTTCBCCCCEEE--EEETTEEEEEEH-HHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEES-
T ss_pred cCCCCCCCCCcEee--cccCCCceEEeH-HHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEEC-
Confidence 46799999999964 45 78 89999 88 899965 55567999999999 899999999999998999 999986
Q ss_pred CCCChhcHHHHHHHHHHcCCc--cceeecCChhHHHHhCCC-----------ceeEEEEECCCCcEEEEecCCC----ch
Q 001380 496 KFDNEKDLEAIRNAVLRYGIS--HPVVNDGDMNLWRELGVN-----------SWPTFAVVGPNGKLLAQLAGEG----HR 558 (1089)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~--~~v~~d~~~~l~~~~~v~-----------~~Pt~~lid~~G~i~~~~~G~~----~~ 558 (1089)
++++..++|+++++++ ||++.|.+++++++||+. ..|++|||| +|+|++.+.++. +.
T Consensus 101 -----d~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~~~~~g~g~~~~r~tfiId-dG~I~~~~~~~~~g~~~~ 174 (184)
T 3uma_A 101 -----NDLHVMGAWATHSGGMGKIHFLSDWNAAFTKAIGMEIDLSAGTLGIRSKRYSMLVE-DGVVKALNIEESPGQATA 174 (184)
T ss_dssp -----SCHHHHHHHHHHHTCTTTSEEEECTTCHHHHHTTCEEEEGGGTCEEEECCEEEEEE-TTEEEEEEECSSTTCCST
T ss_pred -----CCHHHHHHHHHHhCCCCceEEEEcCchHHHHHcCCceeccccCCcccceeEEEEEC-CCEEEEEEEeCCCCCCcC
Confidence 4678899999999999 999999999999999996 358899996 999999987652 34
Q ss_pred hhHHHHHH
Q 001380 559 KDLDDLVE 566 (1089)
Q Consensus 559 ~~l~~~l~ 566 (1089)
...+++|+
T Consensus 175 ~~~~~vL~ 182 (184)
T 3uma_A 175 SGAAAMLE 182 (184)
T ss_dssp TSHHHHHH
T ss_pred CCHHHHHh
Confidence 55665554
|
| >3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C | Back alignment and structure |
|---|
Probab=99.80 E-value=8.8e-20 Score=196.77 Aligned_cols=140 Identities=15% Similarity=0.150 Sum_probs=117.8
Q ss_pred hccCCCCCCCCCCcccc-CCCCCceeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCC
Q 001380 421 VENRKTTPIVPEFPAKL-DWLNTAPLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFD 498 (1089)
Q Consensus 421 ~~~~~~g~~~P~f~~~~-~~~~g~~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~ 498 (1089)
.....+|+++|+|++.. .+.+|++++| ++++||++||+|| ++||++|+.++|.|++++++|+++++.||+|++
T Consensus 59 ~~~l~vG~~aPdF~l~~l~d~~G~~vsL-sd~kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~IS~---- 133 (254)
T 3tjj_A 59 LSKAKISKPAPYWEGTAVIDGEFKELKL-TDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSV---- 133 (254)
T ss_dssp CCCCCTTSBCCCCEEEEEETTEEEEEEG-GGGTTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEEEES----
T ss_pred ccccCCCCCCCCcEeeeecCCCCcEEeH-HHHCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEcC----
Confidence 34567999999999752 2446789999 9999999999999 999999999999999999999988999999986
Q ss_pred ChhcHHHHHHHHHHc-------CCccceeecCChhHHHHhCCC------ceeEEEEECCCCcEEEEecCCC----chhhH
Q 001380 499 NEKDLEAIRNAVLRY-------GISHPVVNDGDMNLWRELGVN------SWPTFAVVGPNGKLLAQLAGEG----HRKDL 561 (1089)
Q Consensus 499 ~~~~~~~~~~~~~~~-------~~~~~v~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~G~~----~~~~l 561 (1089)
++.+..++|++++ +++||++.|.+.++++.||+. .+|++||||++|+|++.+.+.. +.+++
T Consensus 134 --D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~va~~ygv~~~~~g~~~p~tflID~~G~I~~~~~~~~~~~~~~~ei 211 (254)
T 3tjj_A 134 --DSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDET 211 (254)
T ss_dssp --SCHHHHHHHHTSCGGGTSCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHH
T ss_pred --CCHHHHHHHHHHHHHhcCCcccccceeeCcHHHHHHHcCCccccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHH
Confidence 4566777888776 789999999999999999996 5899999999999999977643 23444
Q ss_pred HHHHHH
Q 001380 562 DDLVEA 567 (1089)
Q Consensus 562 ~~~l~~ 567 (1089)
.+.|+.
T Consensus 212 l~~L~a 217 (254)
T 3tjj_A 212 LRLVQA 217 (254)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 444443
|
| >2p11_A Hypothetical protein; putative haloacid dehalogenase-like hydrolase, structural GE joint center for structural genomics, JCSG; 2.20A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.4e-20 Score=197.23 Aligned_cols=201 Identities=14% Similarity=0.185 Sum_probs=144.4
Q ss_pred CCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCH------HhHhhhcCCC-HHHHHHHHHhhcCCCCCCHHHHHHH
Q 001380 77 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTV------EDFLPFMGTG-EANFLGGVASVKGVKGFDSEAAKKR 149 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (1089)
.++++|+||+||||+|+...+..++.++++++|+.... +.+....+.. .......+....... ...+.
T Consensus 9 ~~~k~viFDlDGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~~~~ 83 (231)
T 2p11_A 9 PHDIVFLFDCDNTLLDNDHVLADLRAHMMREFGAQNSARYWEIFETLRTELGYADYLGALQRYRLEQPRD-----TRLLL 83 (231)
T ss_dssp CCSEEEEECCBTTTBCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHCTTC-----TGGGG
T ss_pred CCCeEEEEcCCCCCEecHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHhcCchHHHHHHHHHHhccccc-----hHHHH
Confidence 35799999999999999999999999999999876432 2222333333 122222221111111 11122
Q ss_pred HHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHH
Q 001380 150 FFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFL 229 (1089)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~ 229 (1089)
+.+.+... .. ...++||+.++|+.|+++| +++|+||+....++..++.+|+. .+|+.++.. . ++++.++.
T Consensus 84 ~~~~~~~~-~~--~~~~~~g~~~~l~~l~~~g-~~~i~Tn~~~~~~~~~l~~~gl~-~~f~~~~~~---~--~~K~~~~~ 153 (231)
T 2p11_A 84 MSSFLIDY-PF--ASRVYPGALNALRHLGARG-PTVILSDGDVVFQPRKIARSGLW-DEVEGRVLI---Y--IHKELMLD 153 (231)
T ss_dssp GHHHHHHC-CG--GGGBCTTHHHHHHHHHTTS-CEEEEEECCSSHHHHHHHHTTHH-HHTTTCEEE---E--SSGGGCHH
T ss_pred HHHHHHHH-HH--hCCcCccHHHHHHHHHhCC-CEEEEeCCCHHHHHHHHHHcCcH-HhcCeeEEe---c--CChHHHHH
Confidence 22222222 11 2378999999999999999 99999999999999999999996 888765542 2 34466777
Q ss_pred HHHHHcCCCCCcEEEEcCChh---hHHHHHHcCCeEEEEcCCC---CHHHHhhc-CCcEEecCcccCCHHHHHh
Q 001380 230 SASKILNVPTSECIVIEDALA---GVQAAKAAQMRCIAVTTTL---SEERLKEA-SPSLIRKEIGSVSLNDILT 296 (1089)
Q Consensus 230 ~~l~~lgv~p~~~v~VGD~~~---Di~aA~~aG~~~i~V~~g~---~~~~l~~~-~~d~vi~dl~el~i~~ll~ 296 (1089)
.+++ +++|++|+||||+.+ |+.+|+++||++++|.+|. ..+.+... .|++++.++.++ .++|.
T Consensus 154 ~~~~--~~~~~~~~~vgDs~~d~~di~~A~~aG~~~i~v~~g~~~~~~~~l~~~~~~~~~i~~~~el--~~~l~ 223 (231)
T 2p11_A 154 QVME--CYPARHYVMVDDKLRILAAMKKAWGARLTTVFPRQGHYAFDPKEISSHPPADVTVERIGDL--VEMDA 223 (231)
T ss_dssp HHHH--HSCCSEEEEECSCHHHHHHHHHHHGGGEEEEEECCSSSSSCHHHHHHSCCCSEEESSGGGG--GGCGG
T ss_pred HHHh--cCCCceEEEEcCccchhhhhHHHHHcCCeEEEeCCCCCCCcchhccccCCCceeecCHHHH--HHHHH
Confidence 7766 789999999999998 9999999999999999984 44566666 499999999988 44443
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-18 Score=188.73 Aligned_cols=201 Identities=20% Similarity=0.323 Sum_probs=155.6
Q ss_pred ccC-CcceeEEeeCCCEEEE-EECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEE
Q 001380 655 TFN-RPQGLAYNAKKNLLYV-ADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYI 732 (1089)
Q Consensus 655 ~f~-~P~gla~d~~g~~lyV-aD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyv 732 (1089)
.|. .|.+|+++++|+ +|| +|..++.|++++..++....+.. ..+..|++|+++++| .|||
T Consensus 21 ~~~~~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~~~----------------~~~~~p~~i~~~~~g-~l~v 82 (270)
T 1rwi_B 21 DFRLSPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVLPF----------------NGLYQPQGLAVDGAG-TVYV 82 (270)
T ss_dssp SSCCCEEEEEECTTCC-EEEEECSSSCEEEEECC-----EECCC----------------CSCCSCCCEEECTTC-CEEE
T ss_pred cccCCccceEECCCCC-EEEEccCCCCcEEEecCCCcccceEee----------------CCcCCcceeEECCCC-CEEE
Confidence 455 999999999998 999 99999999999986665544321 114579999999987 5999
Q ss_pred EECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEec
Q 001380 733 AMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAG 812 (1089)
Q Consensus 733 ad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g 812 (1089)
++. ++.|+++|+.++....+.. ..+..|.+|+++++| +|||++..+++|.+++..+.......
T Consensus 83 ~~~-~~~i~~~d~~~~~~~~~~~--------------~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~~~- 145 (270)
T 1rwi_B 83 TDF-NNRVVTLAAGSNNQTVLPF--------------DGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQTVLP- 145 (270)
T ss_dssp EET-TTEEEEECTTCSCCEECCC--------------CSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCCSCEECC-
T ss_pred EcC-CCEEEEEeCCCceEeeeec--------------CCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCceeEeec-
Confidence 998 8899999988776554421 224579999999998 79999999999999965432221110
Q ss_pred CCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccC
Q 001380 813 GDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLS 892 (1089)
Q Consensus 813 ~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~ 892 (1089)
...+..|.+++++++|++||++..+++|.++|++++....... ..+.
T Consensus 146 --------------------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~-------------~~~~ 192 (270)
T 1rwi_B 146 --------------------FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPF-------------TDIT 192 (270)
T ss_dssp --------------------CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCC-------------SSCC
T ss_pred --------------------cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecc-------------cCCC
Confidence 0124579999999999999999999999999998776554321 1357
Q ss_pred CCceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 893 EPAGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 893 ~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
.|.+|+++++|+|||++..+++|.++++++.
T Consensus 193 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~ 223 (270)
T 1rwi_B 193 APWGIAVDEAGTVYVTEHNTNQVVKLLAGST 223 (270)
T ss_dssp SEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred CceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence 7999999999999999999999999999876
|
| >1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-19 Score=185.58 Aligned_cols=137 Identities=13% Similarity=0.072 Sum_probs=114.9
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCC-CcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChh
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYC-CINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEK 501 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~w-C~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~ 501 (1089)
...+|+++|+|++. +.+|+.+++ ++++||++||+||++| |++|+.++|.|++++++ .++.+|+|++ +
T Consensus 17 ~l~~G~~~P~f~l~--~~~G~~v~l-~~~~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~---~~v~vv~Is~------D 84 (175)
T 1xvq_A 17 LPAVGSPAPAFTLT--GGDLGVISS-DQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA---SGATVLCVSK------D 84 (175)
T ss_dssp CCCTTSBCCCCEEE--CTTSCEEEG-GGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH---TTCEEEEEES------S
T ss_pred CCCcCCcCCCeEEE--CCCCCEEeH-HHcCCCEEEEEEEeCCCCchHHHHHHHHHHHHhh---cCCEEEEEEC------C
Confidence 35689999999964 569999999 8999999999999998 99999999999999998 5799999986 4
Q ss_pred cHHHHHHHHHHcCC-ccceeecCChhHHHHhCCCce---------eEEEEECCCCcEEEEecC--CCchhhHHHHHHHHH
Q 001380 502 DLEAIRNAVLRYGI-SHPVVNDGDMNLWRELGVNSW---------PTFAVVGPNGKLLAQLAG--EGHRKDLDDLVEAAL 569 (1089)
Q Consensus 502 ~~~~~~~~~~~~~~-~~~v~~d~~~~l~~~~~v~~~---------Pt~~lid~~G~i~~~~~G--~~~~~~l~~~l~~~l 569 (1089)
+.+.+++|++++++ +|+++.|.+.++++.|++... |++||||++|+|++.+.| ......++++|+.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~g~~~p~~~lid~~G~I~~~~~g~~~~~~~~~~~~l~~l~ 164 (175)
T 1xvq_A 85 LPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALG 164 (175)
T ss_dssp CHHHHTTCC------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCceEeeCCHHHHHHHhCCcccccccCCcccceEEEECCCCeEEEEEECCCcCCCCCHHHHHHHHH
Confidence 56778999999999 899999999999999999887 999999999999999874 334567888887776
Q ss_pred HH
Q 001380 570 LF 571 (1089)
Q Consensus 570 ~~ 571 (1089)
+.
T Consensus 165 ~~ 166 (175)
T 1xvq_A 165 AT 166 (175)
T ss_dssp HT
T ss_pred hh
Confidence 54
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-17 Score=185.28 Aligned_cols=240 Identities=14% Similarity=0.180 Sum_probs=179.1
Q ss_pred CCCCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEE
Q 001380 596 FTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVAD 675 (1089)
Q Consensus 596 ~~~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD 675 (1089)
....+.++.++++++.++.||++|..+++|.++++++.....+... ..|.+++++++|+ +|++.
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~---------------~~~~~i~~~~dG~-l~v~~ 71 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMD---------------APVSSVALRQSGG-YVATI 71 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECS---------------SCEEEEEEBTTSS-EEEEE
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCC---------------CceEEEEECCCCC-EEEEE
Confidence 3567789999999988899999999999999999986655554332 2689999999999 89987
Q ss_pred CCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC-----------CCcEEEEEE
Q 001380 676 TENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA-----------GQHQIWEHS 744 (1089)
Q Consensus 676 ~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~-----------~~~~I~~~~ 744 (1089)
++.|.++|++++.++.+..... ....+.|++++++++| .+|+++. ..+.|++++
T Consensus 72 --~~~l~~~d~~~g~~~~~~~~~~------------~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~~~~~l~~~d 136 (297)
T 3g4e_A 72 --GTKFCALNWKEQSAVVLATVDN------------DKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVLERHQGALYSLF 136 (297)
T ss_dssp --TTEEEEEETTTTEEEEEEECCT------------TCSSEEEEEEEECTTS-CEEEEEEECCSBTTBCCTTCEEEEEEC
T ss_pred --CCeEEEEECCCCcEEEEEecCC------------CCCCCCCCCEEECCCC-CEEEecCCcccccccccCCCcEEEEEE
Confidence 6799999999999888764321 0124579999999988 6999874 346899998
Q ss_pred CCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEc--CCCCeEEEecCCCCCCCCcc
Q 001380 745 TVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNL--KTGGSRLLAGGDPIFPDNLF 822 (1089)
Q Consensus 745 ~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~--~~~~~~~~~g~~~~~~~~l~ 822 (1089)
+. +.+..+. ..+..|+||+++++|+.||++|+.+++|++++. .++..... ..++
T Consensus 137 ~~-g~~~~~~---------------~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~--------~~~~ 192 (297)
T 3g4e_A 137 PD-HHVKKYF---------------DQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNR--------RSVY 192 (297)
T ss_dssp TT-SCEEEEE---------------EEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEE--------EEEE
T ss_pred CC-CCEEEEe---------------eccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCc--------EEEE
Confidence 76 4444333 234579999999999899999999999999986 34433110 0001
Q ss_pred ccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeE-EEEeccCCCCCCCCcccccccCCCceEEEc-
Q 001380 823 KFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRV-STLAGIGKAGFKDGAALAAQLSEPAGIIEA- 900 (1089)
Q Consensus 823 ~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v-~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd- 900 (1089)
.+... ...|.|+++|++|+|||++..+++|.++|++++.+ .++.. .-..|+++++.
T Consensus 193 ~~~~~--------~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~--------------p~~~~t~~~f~g 250 (297)
T 3g4e_A 193 KLEKE--------EQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL--------------PVDKTTSCCFGG 250 (297)
T ss_dssp ECCGG--------GCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC--------------SSSBEEEEEEES
T ss_pred ECCCC--------CCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC--------------CCCCceEEEEeC
Confidence 11110 23699999999999999999999999999985554 45432 12458999997
Q ss_pred cCC-cEEEEECCC
Q 001380 901 QNG-NLFIADTNN 912 (1089)
Q Consensus 901 ~~G-~lyVad~~n 912 (1089)
+++ .|||+....
T Consensus 251 ~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 251 KNYSEMYVTCARD 263 (297)
T ss_dssp GGGCEEEEEEBCT
T ss_pred CCCCEEEEEcCCc
Confidence 555 599998654
|
| >2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.4e-20 Score=188.06 Aligned_cols=137 Identities=18% Similarity=0.173 Sum_probs=118.2
Q ss_pred CCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcc-hhhhhhhHHHHHHHcCCC---CEEEEEEeCCCCCCh
Q 001380 425 KTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCIN-CMHVLPDLEFLEKKYKDM---PFTVVGVHSAKFDNE 500 (1089)
Q Consensus 425 ~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~-C~~~~p~l~~l~~~~~~~---~v~vi~v~~~~~~~~ 500 (1089)
.+|+++|+|++. +.+| .+++ ++++||++||+||++||++ |+.++|.|++++++|+++ ++.+|+|+++. ..
T Consensus 11 ~~G~~~p~f~l~--~~~g-~~~l-~~~~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~--~~ 84 (172)
T 2k6v_A 11 LLNPKPVDFALE--GPQG-PVRL-SQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDP--ER 84 (172)
T ss_dssp EEEEEECCCEEE--CSSS-EEEG-GGSTTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCT--TT
T ss_pred ccCCCCCCeEEE--cCCC-CCcH-HHhCCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECC--CC
Confidence 357889999964 5699 9999 8999999999999999998 999999999999999864 79999998742 23
Q ss_pred hcHHHHHHHHHHcCCccceeecCC---hhHHHHhCC---------------CceeEEEEECCCCcEEEEecCCC--chhh
Q 001380 501 KDLEAIRNAVLRYGISHPVVNDGD---MNLWRELGV---------------NSWPTFAVVGPNGKLLAQLAGEG--HRKD 560 (1089)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~v~~d~~---~~l~~~~~v---------------~~~Pt~~lid~~G~i~~~~~G~~--~~~~ 560 (1089)
++++.+++|+++++++|+++.|.+ .++++.|++ .++|++|||| +|++++++.|.. +.++
T Consensus 85 d~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~~g~~~~~~~~ 163 (172)
T 2k6v_A 85 DPPEVADRYAKAFHPSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLYSPDKAEATDR 163 (172)
T ss_dssp CCHHHHHHHHHHHCTTEEEECCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEEECHHHHTCHHH
T ss_pred CCHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEEECCCCCCCHHH
Confidence 578899999999999999999987 688888885 4789999999 999999998877 7777
Q ss_pred HHHHHHHH
Q 001380 561 LDDLVEAA 568 (1089)
Q Consensus 561 l~~~l~~~ 568 (1089)
+.+.|+++
T Consensus 164 l~~~l~~l 171 (172)
T 2k6v_A 164 VVADLQAL 171 (172)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 77766543
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.4e-21 Score=192.89 Aligned_cols=139 Identities=19% Similarity=0.334 Sum_probs=121.2
Q ss_pred CCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHH-HHHHcC-CCCEEEEEEeCCCCCChh
Q 001380 424 RKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEF-LEKKYK-DMPFTVVGVHSAKFDNEK 501 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~-l~~~~~-~~~v~vi~v~~~~~~~~~ 501 (1089)
..+|+++|+|++. +.+|+.+++ ++++||++||+||++||++|+.++|.|++ ++++++ +.++.+|+|++ ++
T Consensus 7 l~~g~~~p~f~l~--~~~g~~~~l-~~~~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~-----d~ 78 (159)
T 2ls5_A 7 VRIGEMAPDFTIT--LTDGKQVTL-SSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDR-----DE 78 (159)
Confidence 4689999999954 569999999 89999999999999999999999999998 999998 67899999965 45
Q ss_pred cHHHHHHHHHHcCCccceeecCChhHHHHhC--CCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHH
Q 001380 502 DLEAIRNAVLRYGISHPVVNDGDMNLWRELG--VNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLF 571 (1089)
Q Consensus 502 ~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~--v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~ 571 (1089)
+.+.++++.++++++||++.|.+.++++.|+ +.++|+++|||++|++++++.|. ..+++.++|+.+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~~~g~-~~~~l~~~l~~l~~~ 149 (159)
T 2ls5_A 79 PLEKVLAFAKSTGVTYPLGLDPGADIFAKYALRDAGITRNVLIDREGKIVKLTRLY-NEEEFASLVQQINEM 149 (159)
Confidence 5678899999999999999999999999999 46699999999999999998874 556677776665543
|
| >3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.8e-19 Score=183.46 Aligned_cols=122 Identities=24% Similarity=0.311 Sum_probs=106.9
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCCh---------------HhHHHHHHHCCCCCCCccEEEE-----cCCccCCCCC
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADR---------------IKVDANLAAAGLPVSMFDAIVS-----ADAFENLKPA 224 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~---------------~~~~~~l~~~gl~~~~fd~i~~-----~~~~~~~KP~ 224 (1089)
.++||+.++|+.|+++|++++|+||+.. +.++..++.+|. +|+.++. +++....||+
T Consensus 27 ~~~~g~~~~l~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~~~~~~~~KP~ 103 (179)
T 3l8h_A 27 IALPGSLQAIARLTQADWTVVLATNQSGLARGLFDTATLNAIHDKMHRALAQMGG---VVDAIFMCPHGPDDGCACRKPL 103 (179)
T ss_dssp CBCTTHHHHHHHHHHTTCEEEEEEECTTTTTTSSCHHHHHHHHHHHHHHHHHTTC---CCCEEEEECCCTTSCCSSSTTS
T ss_pred eECcCHHHHHHHHHHCCCEEEEEECCCccccCcCCHHHHHHHHHHHHHHHHhCCC---ceeEEEEcCCCCCCCCCCCCCC
Confidence 6899999999999999999999999876 677888888883 3556552 5777889999
Q ss_pred HHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHh---hcCCcEEecCcccC
Q 001380 225 PDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLK---EASPSLIRKEIGSV 289 (1089)
Q Consensus 225 ~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~---~~~~d~vi~dl~el 289 (1089)
|++|+++++++|++|++|+||||+.+|+++|+++||++++|.+|....+.. ...|++++.++.|+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~vGD~~~Di~~a~~aG~~~i~v~~g~~~~~~~~~~~~~~d~v~~~l~el 171 (179)
T 3l8h_A 104 PGMYRDIARRYDVDLAGVPAVGDSLRDLQAAAQAGCAPWLVQTGNGRKTLAQGGLPEGTRVCEDLAAV 171 (179)
T ss_dssp SHHHHHHHHHHTCCCTTCEEEESSHHHHHHHHHHTCEEEEESTTTHHHHHHHCCCCTTEEEESSHHHH
T ss_pred HHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCCcEEEECCCCcchhhhhcccCCCcEEecCHHHH
Confidence 999999999999999999999999999999999999999999998444333 26799999999998
|
| >2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A | Back alignment and structure |
|---|
Probab=99.79 E-value=8e-20 Score=185.35 Aligned_cols=136 Identities=18% Similarity=0.118 Sum_probs=116.6
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCC-CcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChh
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYC-CINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEK 501 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~w-C~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~ 501 (1089)
...+|+++|+|++. +.+|+++++ ++++||++||+||++| |++|+.++|.|++++++| .++.+|+|++ +
T Consensus 17 ~~~~G~~~p~f~l~--~~~G~~~~l-~~~~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~--~~~~vv~is~------d 85 (167)
T 2jsy_A 17 EVKVGDQAPDFTVL--TNSLEEKSL-ADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL--GDVNVYTISA------D 85 (167)
T ss_dssp CCCTTSCCCCCEEE--BTTCCEEEH-HHHTTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH--SSCEEEEEEC------S
T ss_pred ccCCCCcCCceEEE--CCCCCEeeH-HHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHc--CCCEEEEEEC------C
Confidence 35689999999965 569999999 8999999999999999 999999999999999999 5799999986 2
Q ss_pred cHHHHHHHHHHcCC-ccceeec-CChhHHHHhCCCc------eeEEEEECCCCcEEEEecCCC-----chhhHHHHHHHH
Q 001380 502 DLEAIRNAVLRYGI-SHPVVND-GDMNLWRELGVNS------WPTFAVVGPNGKLLAQLAGEG-----HRKDLDDLVEAA 568 (1089)
Q Consensus 502 ~~~~~~~~~~~~~~-~~~v~~d-~~~~l~~~~~v~~------~Pt~~lid~~G~i~~~~~G~~-----~~~~l~~~l~~~ 568 (1089)
+.+.+++|++++++ +||++.| .+.++++.|++.. .|++||||++|+|++++.|.. +.+++.+.|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~l 165 (167)
T 2jsy_A 86 LPFAQARWCGANGIDKVETLSDHRDMSFGEAFGVYIKELRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAKAL 165 (167)
T ss_dssp SGGGTSCCGGGSSCTTEEEEEGGGTCHHHHHTTCBBTTTCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCCceEeeCCchhHHHHHhCCccccCCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHHHHh
Confidence 45568889999999 8999999 8899999999987 499999999999999987642 235555555554
Q ss_pred H
Q 001380 569 L 569 (1089)
Q Consensus 569 l 569 (1089)
+
T Consensus 166 l 166 (167)
T 2jsy_A 166 V 166 (167)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-17 Score=186.44 Aligned_cols=256 Identities=15% Similarity=0.213 Sum_probs=187.1
Q ss_pred CCCCCCCCceEEEeecCCeEEEE-------eCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeC
Q 001380 596 FTSPLKFPGKLAIDILNNRLFIS-------DSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAK 667 (1089)
Q Consensus 596 ~~~~l~~P~~vavd~~~g~L~vs-------d~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~ 667 (1089)
+..++..|.++++++ +|+||++ +...++|.+++++ |+.. .+...... .....|.+++++++
T Consensus 13 ~~~~~~~~~~~~~~~-~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~~~~---------~~~~~~~~i~~~~~ 81 (314)
T 1pjx_A 13 VTEDIPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-VICKPEVN---------GYGGIPAGCQCDRD 81 (314)
T ss_dssp EECCCTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEE-EEECCEET---------TEECCEEEEEECSS
T ss_pred hhccCCCccCceECC-CCCEEEEEeccccCCCCCCEEEEEeCCCCcEE-EEEecccC---------CCCCCCceEEEecC
Confidence 467789999999995 8899999 8888999999964 6654 33221000 11247899999998
Q ss_pred -CCEEEEEECCCCEEEEEECCCCeEEEE-ecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC--------
Q 001380 668 -KNLLYVADTENHALREIDFVNDTVRTL-AGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ-------- 737 (1089)
Q Consensus 668 -g~~lyVaD~~n~~I~~~d~~~g~v~~~-ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~-------- 737 (1089)
|+ |||++..+ .|.+++.+ +.+..+ ..... ......|++++++++| .+||++.+.
T Consensus 82 ~g~-l~v~~~~~-~l~~~d~~-g~~~~~~~~~~~------------~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~ 145 (314)
T 1pjx_A 82 ANQ-LFVADMRL-GLLVVQTD-GTFEEIAKKDSE------------GRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYT 145 (314)
T ss_dssp SSE-EEEEETTT-EEEEEETT-SCEEECCSBCTT------------SCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCC
T ss_pred CCc-EEEEECCC-CEEEEeCC-CCEEEEEeccCC------------CccccCCcCEEECCCC-CEEEEecCccccccccc
Confidence 65 99999754 89999998 777766 42110 0124579999999987 899999765
Q ss_pred -------cEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEc----CCCCEEEEEeCCCCeEEEEEcC-CC
Q 001380 738 -------HQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLS----PDFMEIYVADSESSSIRALNLK-TG 805 (1089)
Q Consensus 738 -------~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~----~~g~~lyvad~~~~~I~~~~~~-~~ 805 (1089)
+.|+++++. +....+. ..+..|++++++ ++|+.||+++..+++|++++.+ ++
T Consensus 146 ~~~~~~~~~l~~~~~~-g~~~~~~---------------~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g 209 (314)
T 1pjx_A 146 RSMQEKFGSIYCFTTD-GQMIQVD---------------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPA 209 (314)
T ss_dssp BTTSSSCEEEEEECTT-SCEEEEE---------------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETT
T ss_pred ccccCCCCeEEEECCC-CCEEEec---------------cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCC
Confidence 689999987 6555443 123468999999 9987899999999999999875 33
Q ss_pred CeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCC-eEEEEeccCCCCCCCC
Q 001380 806 GSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASN-RVSTLAGIGKAGFKDG 884 (1089)
Q Consensus 806 ~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~-~v~t~~g~g~~g~~~g 884 (1089)
....... +..+... .+..|.++++|++|++||++..++.|.++|++++ .+.++..
T Consensus 210 ~~~~~~~--------~~~~~~~-------~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~--------- 265 (314)
T 1pjx_A 210 KIENKKV--------WGHIPGT-------HEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC--------- 265 (314)
T ss_dssp EEEEEEE--------EEECCCC-------SSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC---------
T ss_pred ccccceE--------EEECCCC-------CCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeC---------
Confidence 2211000 0000000 0146899999999999999998999999999844 3444432
Q ss_pred cccccccCCCceEEEccCCc-EEEEECCCCEEEEEeCCCC
Q 001380 885 AALAAQLSEPAGIIEAQNGN-LFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 885 ~~~~~~l~~P~gi~vd~~G~-lyVad~~n~~I~~~~~~~~ 923 (1089)
....|.+++++++|+ |||++..++.|.+++++..
T Consensus 266 -----~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 266 -----PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp -----SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred -----CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 225699999999998 9999999999999998754
|
| >3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.6e-19 Score=189.43 Aligned_cols=188 Identities=20% Similarity=0.214 Sum_probs=130.9
Q ss_pred CCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHHH
Q 001380 77 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKG-VKGFDSEAAKKRFFEIYL 155 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 155 (1089)
.++|+|+||+||||++++. +..+.+.++.......+..........+.+.+..... +.. ...+...+
T Consensus 2 ~~~k~vifDlDGTL~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------ 69 (217)
T 3m1y_A 2 SLQKLAVFDFDSTLVNAET-----IESLARAWGVFDEVKTITLKAMNGETDFHKSLILRVSKLKN-MPLKLAKE------ 69 (217)
T ss_dssp CCCEEEEEECBTTTBSSCH-----HHHHHHHTTCHHHHTTCCCC----CCCHHHHHHHHHHTTTT-CBHHHHHH------
T ss_pred CCCcEEEEeCCCCCCCchh-----HHHHHHHcCchHHHHHHHHHHHcCcCCHHHHHHHHHHHhcC-CCHHHHHH------
Confidence 3589999999999999764 3345555555322222211111111112222211111 111 11111111
Q ss_pred HHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcC----------CccCCCCCH
Q 001380 156 DKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSAD----------AFENLKPAP 225 (1089)
Q Consensus 156 ~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~----------~~~~~KP~~ 225 (1089)
.+.. ..++||+.++|+.|+++|++++|+||+....++..++.+|+. .+|+.+++.+ +...+||++
T Consensus 70 -~~~~---~~~~~~~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~gl~-~~f~~~~~~~~~~~~~~~~~~~~~~k~k~ 144 (217)
T 3m1y_A 70 -VCES---LPLFEGALELVSALKEKNYKVVCFSGGFDLATNHYRDLLHLD-AAFSNTLIVENDALNGLVTGHMMFSHSKG 144 (217)
T ss_dssp -HHTT---CCBCBTHHHHHHHHHTTTEEEEEEEEEEHHHHHHHHHHHTCS-EEEEEEEEEETTEEEEEEEESCCSTTHHH
T ss_pred -HHhc---CcCCCCHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHHcCcc-hhccceeEEeCCEEEeeeccCCCCCCChH
Confidence 1111 378999999999999999999999999999999999999996 8999887433 355689999
Q ss_pred HHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCc
Q 001380 226 DIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEI 286 (1089)
Q Consensus 226 ~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl 286 (1089)
.+|+.+++++|+++++|+||||+.+|+.+|+++|+.+++ + ..++++ ..|++++++.
T Consensus 145 ~~~~~~~~~~g~~~~~~i~vGDs~~Di~~a~~aG~~~~~-~---~~~~l~-~~ad~v~~~~ 200 (217)
T 3m1y_A 145 EMLLVLQRLLNISKTNTLVVGDGANDLSMFKHAHIKIAF-N---AKEVLK-QHATHCINEP 200 (217)
T ss_dssp HHHHHHHHHHTCCSTTEEEEECSGGGHHHHTTCSEEEEE-S---CCHHHH-TTCSEEECSS
T ss_pred HHHHHHHHHcCCCHhHEEEEeCCHHHHHHHHHCCCeEEE-C---ccHHHH-Hhcceeeccc
Confidence 999999999999999999999999999999999998766 2 344554 4699998754
|
| >2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3.5e-19 Score=186.16 Aligned_cols=147 Identities=16% Similarity=0.172 Sum_probs=119.0
Q ss_pred ccCCCCCCC--CCCccccCCCCCceeecccccCCCEEEEEEecCCCcc-hhhhhhhHHHHHHHcCC---CCEEEEEEeCC
Q 001380 422 ENRKTTPIV--PEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCIN-CMHVLPDLEFLEKKYKD---MPFTVVGVHSA 495 (1089)
Q Consensus 422 ~~~~~g~~~--P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~-C~~~~p~l~~l~~~~~~---~~v~vi~v~~~ 495 (1089)
....+|+++ |+|++. +.+|+++++ ++++||++||+||++||++ |+.++|.|+++++++++ .++.+|+|+++
T Consensus 11 ~~~~~g~~~~~p~f~l~--d~~G~~v~l-~~~~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D 87 (200)
T 2b7k_A 11 ANRGYGKPSLGGPFHLE--DMYGNEFTE-KNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCD 87 (200)
T ss_dssp -----CCCCCCCCCEEE--ETTSCEEEG-GGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESC
T ss_pred hHhccCCCCcCCCEEEE--cCCCCEEeH-HHcCCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECC
Confidence 345678886 999964 559999999 8999999999999999998 99999999999988863 37999999874
Q ss_pred CCCChhcHHHHHHHHHHcCCccceeec---CChhHHHHhCCC-cee---------------EEEEECCCCcEEEEecCCC
Q 001380 496 KFDNEKDLEAIRNAVLRYGISHPVVND---GDMNLWRELGVN-SWP---------------TFAVVGPNGKLLAQLAGEG 556 (1089)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~v~~d---~~~~l~~~~~v~-~~P---------------t~~lid~~G~i~~~~~G~~ 556 (1089)
...++++.+++|+++++.+|+.+.+ ...++++.|||. ..| ++||||++|+|+..+.|..
T Consensus 88 --~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g~~ 165 (200)
T 2b7k_A 88 --PARDSPAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNY 165 (200)
T ss_dssp --TTTCCHHHHHHHHTTSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTC
T ss_pred --CCCCCHHHHHHHHHHcCCCceEEeCCHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeCCCC
Confidence 1235788999999999999987764 356789999997 444 7899999999999999988
Q ss_pred chhhHHHHHHHHHHHhc
Q 001380 557 HRKDLDDLVEAALLFYG 573 (1089)
Q Consensus 557 ~~~~l~~~l~~~l~~~~ 573 (1089)
+.+.+.+.|.++++.+.
T Consensus 166 ~~~~~~~~i~~~l~~l~ 182 (200)
T 2b7k_A 166 DEKTGVDKIVEHVKSYV 182 (200)
T ss_dssp CTTHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 88888888888887654
|
| >2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=8.8e-19 Score=184.92 Aligned_cols=127 Identities=20% Similarity=0.294 Sum_probs=110.7
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCC---------------hHhHHHHHHHCCCCCCCccEEEEc------------CC
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSAD---------------RIKVDANLAAAGLPVSMFDAIVSA------------DA 217 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~---------------~~~~~~~l~~~gl~~~~fd~i~~~------------~~ 217 (1089)
.++||+.++|++|+++|++++|+||+. ...++..++++|+. |+.++.+ ++
T Consensus 50 ~~~pg~~e~L~~L~~~G~~~~ivTn~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~---f~~~~~~~~~~~~~~~~~~~~ 126 (211)
T 2gmw_A 50 EFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVD---LDGIYYCPHHPQGSVEEFRQV 126 (211)
T ss_dssp CBCTTHHHHHHHHHHTTCEEEEEEECTHHHHTSSCHHHHHHHHHHHHHHHHHTTCC---CSEEEEECCBTTCSSGGGBSC
T ss_pred cCCcCHHHHHHHHHHCCCeEEEEECcCCcCCCccCHHHHHHHHHHHHHHHHHcCCc---eEEEEECCcCCCCcccccCcc
Confidence 689999999999999999999999998 47889999999995 7776642 44
Q ss_pred ccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeE-EEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHh
Q 001380 218 FENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRC-IAVTTTLSEERLKEASPSLIRKEIGSVSLNDILT 296 (1089)
Q Consensus 218 ~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~-i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~ 296 (1089)
....||++++|+.+++++|+++++|+||||+.+|+++|+++||.+ ++|.+|....+.....|++++.++.++ .+++.
T Consensus 127 ~~~~KP~p~~~~~~~~~lgi~~~~~~~VGD~~~Di~~a~~aG~~~~i~v~~g~~~~~~~~~~~d~vi~~l~el--~~~l~ 204 (211)
T 2gmw_A 127 CDCRKPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAADWVLNSLADL--PQAIK 204 (211)
T ss_dssp CSSSTTSCHHHHHHHHHHTBCGGGCEEEESSHHHHHHHHHTTCSEEEEESSSSCCCHHHHHHCSEEESCGGGH--HHHHH
T ss_pred CcCCCCCHHHHHHHHHHcCCCHHHEEEEcCCHHHHHHHHHCCCceEEEEecCCCccccccCCCCEEeCCHHHH--HHHHH
Confidence 667999999999999999999999999999999999999999999 999998744444456799999999988 45553
|
| >2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.9e-19 Score=180.64 Aligned_cols=135 Identities=16% Similarity=0.111 Sum_probs=109.1
Q ss_pred CCCCCCCCCCccccCC--CCC-----ceeeccccc-CCC-EEEEEEecCCCcchhhh-hhhHHHHHHHcCCCCEE-EEEE
Q 001380 424 RKTTPIVPEFPAKLDW--LNT-----APLQFRRDL-KGK-VVVLDFWTYCCINCMHV-LPDLEFLEKKYKDMPFT-VVGV 492 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~--~~g-----~~~~l~~~~-~gk-~vll~Fwa~wC~~C~~~-~p~l~~l~~~~~~~~v~-vi~v 492 (1089)
..+|+++|+|++.... -+| ++++| +++ +|| +||++||++||++|+.| +|.|++++++|+++++. ||+|
T Consensus 7 ~~~g~~aP~f~l~~~~~~~~G~~~~~~~v~l-~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~I 85 (171)
T 2pwj_A 7 TDILSAASNVSLQKARTWDEGVESKFSTTPV-NDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICV 85 (171)
T ss_dssp ---CCCSSSBCCCSCEECCCSSCTTCCCEEH-HHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEE
T ss_pred ccccCcCCCeEEecccccccCCccCcceEEH-HHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 3567899999965321 146 89999 886 996 67778999999999999 99999999999888899 9999
Q ss_pred eCCCCCChhcHHHHHHHHHHcCC--ccceeecCChhHHHHhCCCc-----------eeEEEEECCCCcEEEEecCCCc--
Q 001380 493 HSAKFDNEKDLEAIRNAVLRYGI--SHPVVNDGDMNLWRELGVNS-----------WPTFAVVGPNGKLLAQLAGEGH-- 557 (1089)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~d~~~~l~~~~~v~~-----------~Pt~~lid~~G~i~~~~~G~~~-- 557 (1089)
+. ++.+..++|++++++ +||++.|.++++++.||+.. +|++++|| +|+|++.+.|...
T Consensus 86 s~------d~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~~~~~~~~~g~~~~~~t~~I~-~G~I~~~~~~~~~~~ 158 (171)
T 2pwj_A 86 AI------NDPYTVNAWAEKIQAKDAIEFYGDFDGSFHKSLELTTDLSAGLLGIRSERWSAYVV-DGKVKALNVEESPSD 158 (171)
T ss_dssp ES------SCHHHHHHHHHHTTCTTTSEEEECTTCHHHHHHTCEEECTTTTCCEEECCEEEEEE-TTEEEEEEECSSTTC
T ss_pred eC------CCHHHHHHHHHHhCCCCceEEEECCccHHHHHhCCccccccccCCcccceeEEEEE-CCEEEEEEeecCCCC
Confidence 85 356788999999996 79999999999999999863 56899999 9999999887643
Q ss_pred --hhhHHHHHH
Q 001380 558 --RKDLDDLVE 566 (1089)
Q Consensus 558 --~~~l~~~l~ 566 (1089)
....+++|+
T Consensus 159 ~~~~~~~~il~ 169 (171)
T 2pwj_A 159 VKVSGAETILG 169 (171)
T ss_dssp CSSSSHHHHHH
T ss_pred CcccCHHHHHh
Confidence 344444443
|
| >3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A | Back alignment and structure |
|---|
Probab=99.78 E-value=7.7e-19 Score=178.49 Aligned_cols=140 Identities=19% Similarity=0.183 Sum_probs=114.8
Q ss_pred CCCCCCC-CCccccCCCCCceeecccccCCCEEEEEEecCCCc-chhhhhhhHHHHHHHcCC--CCEEEEEEeCCCCCCh
Q 001380 425 KTTPIVP-EFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCI-NCMHVLPDLEFLEKKYKD--MPFTVVGVHSAKFDNE 500 (1089)
Q Consensus 425 ~~g~~~P-~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~-~C~~~~p~l~~l~~~~~~--~~v~vi~v~~~~~~~~ 500 (1089)
.+|+++| +|++. +.+|+++++ ++++||++||+||++||+ .|..+++.|++++++|++ .++.+|+|+++ ..
T Consensus 2 ~~G~~~P~~f~l~--d~~G~~v~l-~~~~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d---~~ 75 (170)
T 3me7_A 2 SLGTYVPGDITLV--DSYGNEFQL-KNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFD---PK 75 (170)
T ss_dssp CTTCBCCTTCEEE--ETTCCEEEG-GGGTTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECC---TT
T ss_pred CCCCcCCCCeEEE--cCCcCEEch-HHhCCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECC---CC
Confidence 4799999 99965 559999999 899999999999999998 599999999999999975 56999999984 35
Q ss_pred hcHHHHHHHHHHcCCccce---ee--c--CChhHHHHhCC---------CceeEEEEECCCCcEEEEecCC-CchhhHHH
Q 001380 501 KDLEAIRNAVLRYGISHPV---VN--D--GDMNLWRELGV---------NSWPTFAVVGPNGKLLAQLAGE-GHRKDLDD 563 (1089)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~v---~~--d--~~~~l~~~~~v---------~~~Pt~~lid~~G~i~~~~~G~-~~~~~l~~ 563 (1089)
++++.+++|+++++++++. +. | ...++++.||+ ...|++||||++|+|+..+.|. ...+++.+
T Consensus 76 d~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~~~~~~~i~~ 155 (170)
T 3me7_A 76 DTLEDIKRFQKEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGVNYNYLEFVN 155 (170)
T ss_dssp CCHHHHHHHHHHTTCCSSSEEEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESSSCCHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCCeEEEeCCCHHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeCCCCCHHHHHH
Confidence 7899999999999987653 22 2 34578888775 4568999999999999998886 45666666
Q ss_pred HHHHHHH
Q 001380 564 LVEAALL 570 (1089)
Q Consensus 564 ~l~~~l~ 570 (1089)
.|++++.
T Consensus 156 ~l~~~~~ 162 (170)
T 3me7_A 156 ALRLARG 162 (170)
T ss_dssp HHHHHTT
T ss_pred HHHHhhc
Confidence 6555443
|
| >1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-18 Score=183.83 Aligned_cols=137 Identities=17% Similarity=0.198 Sum_probs=113.4
Q ss_pred CCCCCCCCCCccccCCCCCceeecccccCCC--EEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChh
Q 001380 424 RKTTPIVPEFPAKLDWLNTAPLQFRRDLKGK--VVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEK 501 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk--~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~ 501 (1089)
..+|+.+|+|++. +.+| ++++ ++++|| +||++||++||++|..|++.|++++++|++.++.+|+||+ +
T Consensus 5 l~~G~~aP~F~l~--~~~G-~v~l-~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~IS~---D--- 74 (224)
T 1prx_A 5 LLLGDVAPNFEAN--TTVG-RIRF-HDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSI---D--- 74 (224)
T ss_dssp CCTTCBCCCCEEE--ETTE-EEEH-HHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEES---S---
T ss_pred CCCcCCCCCcEEe--cCCC-CEEH-HHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEcC---C---
Confidence 5689999999965 4488 9999 999998 5666679999999999999999999999988999999987 2
Q ss_pred cHHHHHHHHHH----------cCCccceeecCChhHHHHhCCC------------ceeEEEEECCCCcEEEEecCCC---
Q 001380 502 DLEAIRNAVLR----------YGISHPVVNDGDMNLWRELGVN------------SWPTFAVVGPNGKLLAQLAGEG--- 556 (1089)
Q Consensus 502 ~~~~~~~~~~~----------~~~~~~v~~d~~~~l~~~~~v~------------~~Pt~~lid~~G~i~~~~~G~~--- 556 (1089)
+.+..++|+++ ++++||++.|.+.++++.||+. .+|++||||++|+|++.+.+..
T Consensus 75 ~~~~~~~~~~~i~~~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~g 154 (224)
T 1prx_A 75 SVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTG 154 (224)
T ss_dssp CHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBC
T ss_pred CHHHHHHHHHHHHHhhCcccccCcCcceeecCchHHHHHhCCCCcccccCCCccccceEEEEECCCCEEEEEEecCCCCC
Confidence 33444555554 7899999999999999999984 4799999999999999987643
Q ss_pred -chhhHHHHHHHHHH
Q 001380 557 -HRKDLDDLVEAALL 570 (1089)
Q Consensus 557 -~~~~l~~~l~~~l~ 570 (1089)
+.+++.+.|+.+..
T Consensus 155 r~~~eil~~i~~l~~ 169 (224)
T 1prx_A 155 RNFDEILRVVISLQL 169 (224)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 46677777766554
|
| >2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A | Back alignment and structure |
|---|
Probab=99.77 E-value=9.2e-19 Score=186.07 Aligned_cols=137 Identities=18% Similarity=0.213 Sum_probs=114.6
Q ss_pred CCCCCCCCCCccccCCCCCceeecccccCCC-EEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChh
Q 001380 424 RKTTPIVPEFPAKLDWLNTAPLQFRRDLKGK-VVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEK 501 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk-~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~ 501 (1089)
..+|+++|+|++. +.+| ++++ ++++|| ++||+|| ++||++|..|++.|++++++|++.++.||+||+ +
T Consensus 3 l~iG~~aPdF~l~--~~~G-~v~l-~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~v~vigIS~---D--- 72 (233)
T 2v2g_A 3 ITLGEVFPNFEAD--STIG-KLKF-HDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSC---D--- 72 (233)
T ss_dssp CCTTCBCCCCEEE--ETTC-CEEH-HHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEES---S---
T ss_pred CCCCCCCCCcEEe--cCCC-CEEH-HHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcCCEEEEEcC---C---
Confidence 4689999999965 4488 8999 999998 9999998 999999999999999999999988999999987 2
Q ss_pred cHHHHHHHHH------Hc--CCccceeecCChhHHHHhCCC------------ceeEEEEECCCCcEEEEecCCC----c
Q 001380 502 DLEAIRNAVL------RY--GISHPVVNDGDMNLWRELGVN------------SWPTFAVVGPNGKLLAQLAGEG----H 557 (1089)
Q Consensus 502 ~~~~~~~~~~------~~--~~~~~v~~d~~~~l~~~~~v~------------~~Pt~~lid~~G~i~~~~~G~~----~ 557 (1089)
+.+..++|++ ++ +++||++.|.+.++++.||+. .+|++||||++|+|++.+.+.. +
T Consensus 73 ~~~~~~~~~~~i~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~ 152 (233)
T 2v2g_A 73 NVADHKEWSEDVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYPATTGRN 152 (233)
T ss_dssp CHHHHHHHHHHHHHHHTCCSSCSSCEEECTTCHHHHHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEEEEECTTBCCC
T ss_pred CHHHHHHHHHHHHHhhCcccCCceEEEECChHHHHHHhCCcCcccccCCCcccccceEEEECCCCEEEEEEecCCCCCCC
Confidence 3344555555 56 899999999999999999985 5799999999999999976533 4
Q ss_pred hhhHHHHHHHHHH
Q 001380 558 RKDLDDLVEAALL 570 (1089)
Q Consensus 558 ~~~l~~~l~~~l~ 570 (1089)
.+++.+.|+.+..
T Consensus 153 ~~eilr~l~~Lq~ 165 (233)
T 2v2g_A 153 FSEILRVIDSLQL 165 (233)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5666666665543
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.6e-17 Score=185.66 Aligned_cols=225 Identities=13% Similarity=0.195 Sum_probs=165.0
Q ss_pred ccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCC--CCCCC-CcccccccCCceeEEEecCCCEEE
Q 001380 655 TFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGS--DYQGG-EKGTSQLLNSPWDVCYKPINEKVY 731 (1089)
Q Consensus 655 ~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~--~~~~~-~~~~~~~l~~P~~la~~~~g~~ly 731 (1089)
.|..|.+++++++|+ +|++|..+++|++++.+++.++.+........ ...+. .......+..|.+|+++++++.||
T Consensus 17 ~~~~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~ 95 (322)
T 2fp8_A 17 PSYAPNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY 95 (322)
T ss_dssp SSSCCCCEECCTTCS-SEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE
T ss_pred ccCCceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE
Confidence 377999999999988 66678889999999998888887764321110 00000 011122346799999998445999
Q ss_pred EEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcC-CCCEEEEEeCC-----------------
Q 001380 732 IAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSP-DFMEIYVADSE----------------- 793 (1089)
Q Consensus 732 vad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~-~g~~lyvad~~----------------- 793 (1089)
|++.+ +.|+++|+.++.++.+.... . ...+..|++|++++ +| +|||+|..
T Consensus 96 v~d~~-~~i~~~d~~~g~~~~~~~~~-----~-----~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~ 163 (322)
T 2fp8_A 96 IVDCY-YHLSVVGSEGGHATQLATSV-----D-----GVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDK 163 (322)
T ss_dssp EEETT-TEEEEECTTCEECEEEESEE-----T-----TEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCC
T ss_pred EEECC-CCEEEEeCCCCEEEEecccC-----C-----CCcccccceEEEecCCC-EEEEECCcccccccccceehcccCC
Confidence 99986 45999999888777665321 0 13456799999999 88 99999976
Q ss_pred CCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEEEeCCCCEEEEEeCCCC---e
Q 001380 794 SSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADSYNHKIKKLDPASN---R 869 (1089)
Q Consensus 794 ~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~~n~~I~~~d~~~~---~ 869 (1089)
.++|++++++++.+..+.. .+..|.||+++++|+ +||+|+.+++|.+++.++. .
T Consensus 164 ~g~v~~~d~~~~~~~~~~~----------------------~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~ 221 (322)
T 2fp8_A 164 TGRLIKYDPSTKETTLLLK----------------------ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT 221 (322)
T ss_dssp CEEEEEEETTTTEEEEEEE----------------------EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC
T ss_pred CceEEEEeCCCCEEEEecc----------------------CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc
Confidence 3679999987666554432 156899999999986 9999999999999998753 3
Q ss_pred EEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECC----------CCEEEEEeCCCCCceEEEEe
Q 001380 870 VSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTN----------NNIIRYLDLNKEEPELQTLE 931 (1089)
Q Consensus 870 v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~----------n~~I~~~~~~~~~~~~~~l~ 931 (1089)
...+.. +..|.||++|++|+|||++.. +++|.++++++. .+..+.
T Consensus 222 ~~~~~~---------------~~gP~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~--~~~~~~ 276 (322)
T 2fp8_A 222 AEVLVK---------------IPNPGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGN--ILEVIP 276 (322)
T ss_dssp EEEEEE---------------CSSEEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSC--EEEEEE
T ss_pred cceEEe---------------CCCCCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCC--EEEEEE
Confidence 333321 112999999999999999976 688999999876 555554
|
| >1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl, hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB: 1l8l_A* 1l8o_A | Back alignment and structure |
|---|
Probab=99.77 E-value=5.3e-19 Score=188.51 Aligned_cols=192 Identities=16% Similarity=0.149 Sum_probs=132.3
Q ss_pred CCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCH-HhHhhhcCC--CHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 001380 77 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTV-EDFLPFMGT--GEANFLGGVASVKGVKGFDSEAAKKRFFEI 153 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (1089)
+++++|+||+||||+|++. +.++++.+|..... +.+....+. .............. . .. +.+.+.
T Consensus 12 ~~~k~viFD~DGTLvd~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~----~~~~~~ 79 (225)
T 1nnl_A 12 YSADAVCFDVDSTVIREEG-----IDELAKICGVEDAVSEMTRRAMGGAVPFKAALTERLALIQ--P-SR----EQVQRL 79 (225)
T ss_dssp HHCSEEEEETBTTTBSSCH-----HHHHHHHTTCTTTC------------CHHHHHHHHHHHHC--C-CH----HHHHHH
T ss_pred hhCCEEEEeCccccccccc-----HHHHHHHhCCcHHHHHHHHHHHcCCccHHHHHHHHHHHhc--C-CH----HHHHHH
Confidence 4579999999999999874 45778888886432 233333332 22222222221111 0 11 112222
Q ss_pred HHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCC-CCccEEE--------EcCCccC----
Q 001380 154 YLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPV-SMFDAIV--------SADAFEN---- 220 (1089)
Q Consensus 154 ~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~-~~fd~i~--------~~~~~~~---- 220 (1089)
+.. ....++||+.++|+.|+++|++++|+||+....++..++++|+.. .+|+.++ ++.+...
T Consensus 80 ~~~-----~~~~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 154 (225)
T 1nnl_A 80 IAE-----QPPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPTAE 154 (225)
T ss_dssp HHH-----SCCCBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCCGGGEEEECEEECTTSCEEEECTTSGGGS
T ss_pred HHh-----ccCCCCccHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHcCCCcccEEeeeEEEcCCCcEecCCCCCcccC
Confidence 211 123789999999999999999999999999999999999999951 3777653 3333221
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccC
Q 001380 221 LKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 221 ~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el 289 (1089)
.||||++|+++++++|+ ++|+||||+.+|+.+|+++|+ ++++..+...+ .....+++++.++.++
T Consensus 155 ~~~Kp~~~~~~~~~~~~--~~~~~vGDs~~Di~~a~~ag~-~i~~~~~~~~~-~~~~~~~~~~~~~~el 219 (225)
T 1nnl_A 155 SGGKGKVIKLLKEKFHF--KKIIMIGDGATDMEACPPADA-FIGFGGNVIRQ-QVKDNAKWYITDFVEL 219 (225)
T ss_dssp TTHHHHHHHHHHHHHCC--SCEEEEESSHHHHTTTTTSSE-EEEECSSCCCH-HHHHHCSEEESCGGGG
T ss_pred CCchHHHHHHHHHHcCC--CcEEEEeCcHHhHHHHHhCCe-EEEecCccccH-HHHhcCCeeecCHHHH
Confidence 46888999999999998 789999999999999999999 88886543222 2334799999999887
|
| >1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-18 Score=183.75 Aligned_cols=142 Identities=13% Similarity=0.203 Sum_probs=114.0
Q ss_pred CCCCCCCCCCccccCCC--CCceeecccccCCC-E-EEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCC
Q 001380 424 RKTTPIVPEFPAKLDWL--NTAPLQFRRDLKGK-V-VVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDN 499 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~--~g~~~~l~~~~~gk-~-vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~ 499 (1089)
..+|+++|+|++. +. +| ++++ ++++|| + ||++||++||++|..|++.|++++++|+++++.+|+||+ +.
T Consensus 3 l~iG~~aP~F~l~--~~~~~G-~v~l-~d~~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~vS~---D~ 75 (220)
T 1xcc_A 3 YHLGATFPNFTAK--ASGIDG-DFEL-YKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSC---NS 75 (220)
T ss_dssp CCTTCBCCCCEEC--BTTCSS-CEEH-HHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEES---SC
T ss_pred CCCCCCCCCcEee--cccCCC-cEeH-HHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeC---CC
Confidence 4689999999964 45 77 8999 999998 5 555568999999999999999999999988999999997 33
Q ss_pred hhcHHHHHHHHH----HcCCccceeecCChhHHHHhCCC------------ceeEEEEECCCCcEEEEecCC----Cchh
Q 001380 500 EKDLEAIRNAVL----RYGISHPVVNDGDMNLWRELGVN------------SWPTFAVVGPNGKLLAQLAGE----GHRK 559 (1089)
Q Consensus 500 ~~~~~~~~~~~~----~~~~~~~v~~d~~~~l~~~~~v~------------~~Pt~~lid~~G~i~~~~~G~----~~~~ 559 (1089)
.+...+|.+.++ +++++||++.|.++++++.||+. .+|++||||++|+|++.+.+. .+.+
T Consensus 76 ~~~~~~~~~~i~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~flID~~G~I~~~~~~~~~~g~~~~ 155 (220)
T 1xcc_A 76 KESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAH 155 (220)
T ss_dssp HHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHH
T ss_pred HHHHHHHHHHHHHHhcCCCCcceeEECchhHHHHHhCCCCcccccCCCCCcccceEEEECCCCEEEEEEecCCCCCCCHH
Confidence 334444443332 57899999999999999999984 479999999999999997643 3567
Q ss_pred hHHHHHHHHHHHh
Q 001380 560 DLDDLVEAALLFY 572 (1089)
Q Consensus 560 ~l~~~l~~~l~~~ 572 (1089)
++.+.|+.+....
T Consensus 156 ell~~i~~lq~~~ 168 (220)
T 1xcc_A 156 EILRVLKSLQLTY 168 (220)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 7777777665433
|
| >2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomic protein structure initiative, midwest center for structural genomics, MCSG; HET: G1P; 2.00A {Escherichia coli} SCOP: c.108.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-19 Score=187.95 Aligned_cols=179 Identities=13% Similarity=0.173 Sum_probs=129.5
Q ss_pred CCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcC-----------CCHHHHHHHHHhhcCCCCCCHHH
Q 001380 77 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMG-----------TGEANFLGGVASVKGVKGFDSEA 145 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 145 (1089)
+++++|+||+||||+++.. ..+...+++++.....+.+..+.+ .+...+...+....+... ...
T Consensus 5 ~~~k~viFDlDGTL~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~- 79 (206)
T 2b0c_A 5 EAKMLYIFDLGNVIVDIDF---NRVLGAWSDLTRIPLASLKKSFHMGEAFHQHERGEISDEAFAEALCHEMALPL-SYE- 79 (206)
T ss_dssp -CCCEEEECCBTTTEEEET---HHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHHHTCCC-CHH-
T ss_pred ccccEEEEcCCCeeecCcH---HHHHHHHHHhcCCCHHHHHHHHhcccHHHHHhcCCCCHHHHHHHHHHHhCCCC-CHH-
Confidence 4579999999999999873 223344555555433333333222 123333333333333211 211
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHH-CCCCCCCccEEEEcCCccCCCCC
Q 001380 146 AKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAA-AGLPVSMFDAIVSADAFENLKPA 224 (1089)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~-~gl~~~~fd~i~~~~~~~~~KP~ 224 (1089)
++.+.+... ...++||+.++|+.|+++|++++|+||.....++..++. +|+. .+|+.++++++.+..||+
T Consensus 80 ---~~~~~~~~~-----~~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~~~~~~~l~-~~f~~~~~~~~~~~~Kp~ 150 (206)
T 2b0c_A 80 ---QFSHGWQAV-----FVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEIR-DAADHIYLSQDLGMRKPE 150 (206)
T ss_dssp ---HHHHHHHTC-----EEEECHHHHHHHHHHHHTTCEEEEEECCCCCTTSCCGGGCHHHH-HHCSEEEEHHHHTCCTTC
T ss_pred ---HHHHHHHHH-----hcccCccHHHHHHHHHHCCCeEEEEECCChHHHHHHHHhccChh-hheeeEEEecccCCCCCC
Confidence 122222111 126799999999999999999999999887776666666 6775 889999999999999999
Q ss_pred HHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC
Q 001380 225 PDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL 269 (1089)
Q Consensus 225 ~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~ 269 (1089)
+++|..+++++|+++++|+||||+.+|+.+|+++|+.+++++++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~aG~~~~~~~~~~ 195 (206)
T 2b0c_A 151 ARIYQHVLQAEGFSPSDTVFFDDNADNIEGANQLGITSILVKDKT 195 (206)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEESCHHHHHHHHTTTCEEEECCSTT
T ss_pred HHHHHHHHHHcCCCHHHeEEeCCCHHHHHHHHHcCCeEEEecCCc
Confidence 999999999999999999999999999999999999999998875
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-16 Score=178.04 Aligned_cols=244 Identities=17% Similarity=0.206 Sum_probs=183.1
Q ss_pred CCCCCCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEE
Q 001380 594 RLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYV 673 (1089)
Q Consensus 594 ~~~~~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyV 673 (1089)
+...+.+..+.++++++.++.||++|..+++|.+++.+|+.. .+... -..|.+++++++|+ ||+
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~-~~~~~--------------~~~~~gl~~d~dG~-l~v 101 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVD-VLLDA--------------TAFTNGNAVDAQQR-LVH 101 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEE-EEEES--------------CSCEEEEEECTTSC-EEE
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEE-EEeCC--------------CCccceeeECCCCC-EEE
Confidence 345677889999999986667999999999999999988754 33322 13689999999998 999
Q ss_pred EECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC-----------------C
Q 001380 674 ADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA-----------------G 736 (1089)
Q Consensus 674 aD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~-----------------~ 736 (1089)
++..+++|.+++.+ +.++.+.... ....+++|++++++++| .+|++|. .
T Consensus 102 ~~~~~~~v~~~~~~-g~~~~~~~~~------------~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~ 167 (305)
T 3dr2_A 102 CEHGRRAITRSDAD-GQAHLLVGRY------------AGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELA 167 (305)
T ss_dssp EETTTTEEEEECTT-SCEEEEECEE------------TTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSS
T ss_pred EECCCCEEEEECCC-CCEEEEEecc------------CCCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccC
Confidence 99988999999987 6677765311 01236789999999988 7999864 2
Q ss_pred CcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCC-----CeEEEEEcCCCCeEEEe
Q 001380 737 QHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSES-----SSIRALNLKTGGSRLLA 811 (1089)
Q Consensus 737 ~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~-----~~I~~~~~~~~~~~~~~ 811 (1089)
.+.|+++++.++.+..+. .+..|+||+++++|+.|||+++.+ ++|++++.+++......
T Consensus 168 ~~~v~~~d~~~g~~~~~~----------------~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~ 231 (305)
T 3dr2_A 168 HHSVYRLPPDGSPLQRMA----------------DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRR 231 (305)
T ss_dssp CEEEEEECSSSCCCEEEE----------------EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEE
T ss_pred CCeEEEEcCCCCcEEEEe----------------cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCe
Confidence 368999999877766553 134689999999998899999874 79999998754421000
Q ss_pred cCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCccccccc
Q 001380 812 GGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQL 891 (1089)
Q Consensus 812 g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l 891 (1089)
.+..+ ....|.|+++|++|+|||+. .+.|.++++++..+.++...
T Consensus 232 --------~~~~~----------~~~~pdgi~~d~~G~lwv~~--~~gv~~~~~~g~~~~~~~~~--------------- 276 (305)
T 3dr2_A 232 --------HFASV----------PDGLPDGFCVDRGGWLWSSS--GTGVCVFDSDGQLLGHIPTP--------------- 276 (305)
T ss_dssp --------EEECC----------SSSCCCSEEECTTSCEEECC--SSEEEEECTTSCEEEEEECS---------------
T ss_pred --------EEEEC----------CCCCCCeEEECCCCCEEEec--CCcEEEECCCCCEEEEEECC---------------
Confidence 00000 02358899999999999998 45799999988777777531
Q ss_pred CCCceEEEccCC-cEEEEECCCCEEEEEeC
Q 001380 892 SEPAGIIEAQNG-NLFIADTNNNIIRYLDL 920 (1089)
Q Consensus 892 ~~P~gi~vd~~G-~lyVad~~n~~I~~~~~ 920 (1089)
..|..+++++++ .|||+.. +.|.++++
T Consensus 277 ~~~~~~~f~~d~~~L~it~~--~~l~~~~~ 304 (305)
T 3dr2_A 277 GTASNCTFDQAQQRLFITGG--PCLWMLPL 304 (305)
T ss_dssp SCCCEEEECTTSCEEEEEET--TEEEEEEC
T ss_pred CceeEEEEeCCCCEEEEEcC--CeEEEEEC
Confidence 138899998766 5999874 57777765
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-15 Score=171.28 Aligned_cols=254 Identities=14% Similarity=0.154 Sum_probs=191.7
Q ss_pred CCCceEEEeecCCeEEEEeCC------CCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEE
Q 001380 601 KFPGKLAIDILNNRLFISDSN------HNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYV 673 (1089)
Q Consensus 601 ~~P~~vavd~~~g~L~vsd~~------~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyV 673 (1089)
..|.++++++.+++||+++.+ .++|.++|.+ ++.+..+... ..|.+++++++|+.+|+
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~---------------~~~~~~~~s~dg~~l~v 105 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND---------------LKPFGATINNTTQTLWF 105 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES---------------SCCCSEEEETTTTEEEE
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC---------------CCcceEEECCCCCEEEE
Confidence 357789999977899999976 6789999986 6777666543 25899999999999999
Q ss_pred EECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC-CCcEEEEEECCCCeEEE
Q 001380 674 ADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA-GQHQIWEHSTVDGVTRA 752 (1089)
Q Consensus 674 aD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~-~~~~I~~~~~~~g~~~~ 752 (1089)
++..++.|..+|++++.+......+..... ....-..|++++++|+|+.+|+++. ..+.|+.+|..++....
T Consensus 106 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~ 178 (353)
T 3vgz_A 106 GNTVNSAVTAIDAKTGEVKGRLVLDDRKRT-------EEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKT 178 (353)
T ss_dssp EETTTTEEEEEETTTCCEEEEEESCCCCCC-------SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEE
T ss_pred EecCCCEEEEEeCCCCeeEEEEecCCCccc-------cccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEE
Confidence 999999999999988776444332211100 0011235899999999999999995 47889999999887654
Q ss_pred EeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccc
Q 001380 753 FSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGS 832 (1089)
Q Consensus 753 ~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~ 832 (1089)
.... .-..|.+++++++|+.||+++. ++.|..++..++........ +.. +
T Consensus 179 ~~~~--------------~~~~~~~~~~s~dg~~l~~~~~-~~~i~~~d~~~~~~~~~~~~-----------~~~-~--- 228 (353)
T 3vgz_A 179 AIQN--------------TGKMSTGLALDSEGKRLYTTNA-DGELITIDTADNKILSRKKL-----------LDD-G--- 228 (353)
T ss_dssp EECC--------------CCTTCCCCEEETTTTEEEEECT-TSEEEEEETTTTEEEEEEEC-----------CCS-S---
T ss_pred EecC--------------CCCccceEEECCCCCEEEEEcC-CCeEEEEECCCCeEEEEEEc-----------CCC-C---
Confidence 4320 1124889999999999999986 68999999987765432211 000 0
Q ss_pred cccccCceEEEEccCCc-EEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEEEEC
Q 001380 833 EVLLQHPLGVYCAKNGQ-IYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADT 910 (1089)
Q Consensus 833 ~~~l~~P~gva~~~~G~-lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~ 910 (1089)
.-..|.+++++++|+ +|+++...+.|.++|..++.+..... ...|.+++++++|+ +|+++.
T Consensus 229 --~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---------------~~~~~~~~~s~dg~~l~v~~~ 291 (353)
T 3vgz_A 229 --KEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA---------------APESLAVLFNPARNEAYVTHR 291 (353)
T ss_dssp --SCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE---------------CSSCCCEEEETTTTEEEEEET
T ss_pred --CCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE---------------cCCCceEEECCCCCEEEEEEC
Confidence 123578999999985 99999999999999998777654432 23467899999986 999999
Q ss_pred CCCEEEEEeCCCC
Q 001380 911 NNNIIRYLDLNKE 923 (1089)
Q Consensus 911 ~n~~I~~~~~~~~ 923 (1089)
.++.|.++++.+.
T Consensus 292 ~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 292 QAGKVSVIDAKSY 304 (353)
T ss_dssp TTTEEEEEETTTT
T ss_pred CCCeEEEEECCCC
Confidence 9999999999876
|
| >3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.5e-18 Score=178.20 Aligned_cols=135 Identities=6% Similarity=-0.027 Sum_probs=113.5
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCC-Ccchh-----hhhhhHHHHHHHcCCCCEEEEEEeCCC
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYC-CINCM-----HVLPDLEFLEKKYKDMPFTVVGVHSAK 496 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~w-C~~C~-----~~~p~l~~l~~~~~~~~v~vi~v~~~~ 496 (1089)
...+|+++|+|++. +.+|+.++| ++++||++||+||++| |++|. .+++.|+++ | .++.||+||.
T Consensus 21 ~l~vG~~APdFtL~--d~~G~~vsL-sd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~--~gv~VvgIS~-- 90 (224)
T 3keb_A 21 FPRKGDYLPSFMLV--DDQKHDAAL-ESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W--PHLKLIVITV-- 90 (224)
T ss_dssp CCCTTCBCCCCEEE--ETTSCEEEG-GGGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C--TTSEEEEEES--
T ss_pred cCCCCCCCCCeEEE--CCCCCEEeH-HHhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c--CCCEEEEEEC--
Confidence 35789999999965 558999999 8899999999999888 99999 888888877 5 5799999985
Q ss_pred CCChhcHHHHHHHHHHcCC-ccceeecC-ChhHHHHhCCCc---------eeEEEEECCCCcEEEEecC-----CCchhh
Q 001380 497 FDNEKDLEAIRNAVLRYGI-SHPVVNDG-DMNLWRELGVNS---------WPTFAVVGPNGKLLAQLAG-----EGHRKD 560 (1089)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~-~~~v~~d~-~~~l~~~~~v~~---------~Pt~~lid~~G~i~~~~~G-----~~~~~~ 560 (1089)
++++..++|++++++ +|+++.|. +.++++.|||.. .|++||||++|+|++.+.. ..+.++
T Consensus 91 ----Ds~~~~~~f~~~~gl~~fplLsD~~~~~vak~yGv~~~~~~~~G~~~p~tfvID~dG~I~~~~~~~~~~~~pd~~e 166 (224)
T 3keb_A 91 ----DSPSSLARARHEHGLPNIALLSTLRGRDFHKRYGVLITEYPLSGYTSPAIILADAANVVHYSERLANTRDFFDFDA 166 (224)
T ss_dssp ----SCHHHHHHHHHHHCCTTCEEEESTTCTTHHHHTTCBCCSTTSTTCBCCEEEEECTTCBEEEEEECSBTTCCCCHHH
T ss_pred ----CCHHHHHHHHHHcCCCCceEEEcCCchHHHHHhCCccccccccCCccCEEEEEcCCCEEEEEEecCCCCCCCCHHH
Confidence 577889999999999 69999998 699999999975 7999999999999998653 234566
Q ss_pred HHHHHHHHHHH
Q 001380 561 LDDLVEAALLF 571 (1089)
Q Consensus 561 l~~~l~~~l~~ 571 (1089)
+.+.|+.+.+.
T Consensus 167 vl~~L~~l~~~ 177 (224)
T 3keb_A 167 IEKLLQEGEQQ 177 (224)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhhc
Confidence 66666655443
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A | Back alignment and structure |
|---|
Probab=99.76 E-value=8.8e-19 Score=172.85 Aligned_cols=120 Identities=19% Similarity=0.206 Sum_probs=105.7
Q ss_pred CCCCCCCC-CccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCC-CCEEEEEEeCCCCCChhc
Q 001380 425 KTTPIVPE-FPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD-MPFTVVGVHSAKFDNEKD 502 (1089)
Q Consensus 425 ~~g~~~P~-f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~-~~v~vi~v~~~~~~~~~~ 502 (1089)
..++.+|+ |++. +++|+.+++ ++++||++||+||++||++|+.++|.|++++++|++ .++.+|+|++ +++
T Consensus 2 ~~~~~~P~~f~l~--~~~g~~~~l-~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~-----d~~ 73 (144)
T 1i5g_A 2 GLKKFFPYSTNVL--KGAAADIAL-PSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISW-----DES 73 (144)
T ss_dssp TTTTSCSSCSEEE--ETTEEEEEG-GGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEEC-----CSS
T ss_pred chhhhCCCceEEE--cCCCCEecH-HHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeC-----CCC
Confidence 46789999 9964 559999999 899999999999999999999999999999999985 6899999976 457
Q ss_pred HHHHHHHHHHcCC-ccceee-cCChhHHHHhCCCceeEEEEEC-CCCcEEEEe
Q 001380 503 LEAIRNAVLRYGI-SHPVVN-DGDMNLWRELGVNSWPTFAVVG-PNGKLLAQL 552 (1089)
Q Consensus 503 ~~~~~~~~~~~~~-~~~v~~-d~~~~l~~~~~v~~~Pt~~lid-~~G~i~~~~ 552 (1089)
.+.+++++++++. .+++.. |....+++.|+|.++|+++||| ++|+++.++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~~G~i~~~~ 126 (144)
T 1i5g_A 74 AEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQ 126 (144)
T ss_dssp HHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESC
T ss_pred HHHHHHHHHhCCccccccCchHHHHHHHHHcCCCCCCEEEEEECCCCcEEecc
Confidence 8899999999885 466655 5678899999999999999999 999999874
|
| >2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP phosphatase, carbohydrate metabolism, hydrolase; 1.8A {Escherichia coli} SCOP: c.108.1.14 | Back alignment and structure |
|---|
Probab=99.76 E-value=7e-20 Score=197.85 Aligned_cols=204 Identities=19% Similarity=0.247 Sum_probs=146.4
Q ss_pred CceEEEEecCCcccCCchHHHHH--HHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHH--HHHHHHH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRA--AVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAA--KKRFFEI 153 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 153 (1089)
++|+|+||+||||+++...+..+ +.+.+++.|+... ..+...+++...+...+.. .+... ..... .......
T Consensus 2 ~~k~i~fDlDGTLl~~~~~~~~~~~~~~~l~~~g~~~~--~~t~~~g~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~ 77 (250)
T 2c4n_A 2 TIKNVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLV--LLTNYPSQTGQDLANRFAT-AGVDV-PDSVFYTSAMATAD 77 (250)
T ss_dssp CCCEEEEECBTTTEETTEECTTHHHHHHHHHHTTCCEE--EEESCCSCCHHHHHHHHHH-TTCCC-CGGGEEEHHHHHHH
T ss_pred CccEEEEcCcceEEeCCEeCcCHHHHHHHHHHcCCcEE--EEECCCCCCHHHHHHHHHH-cCCCC-CHHHeEcHHHHHHH
Confidence 47999999999999988766555 5566677787643 2333456777777666655 34321 11110 0111122
Q ss_pred HHHHhcCCCCCCCCccHHHHHHHHHhCCCeEE---------------------------------EEcCCChHhHHHHHH
Q 001380 154 YLDKYAKPNSGIGFPGALELINQCKSKGLKVA---------------------------------VASSADRIKVDANLA 200 (1089)
Q Consensus 154 ~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~va---------------------------------IvSn~~~~~~~~~l~ 200 (1089)
+.+.+.. ...+++|+.++++.|++.|++++ ++||.. ......++
T Consensus 78 ~~~~~~~--~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~~-~~~~~~~~ 154 (250)
T 2c4n_A 78 FLRRQEG--KKAYVVGEGALIHELYKAGFTITDVNPDFVIVGETRSYNWDMMHKAAYFVANGARFIATNPD-THGRGFYP 154 (250)
T ss_dssp HHHTSSC--CEEEEECCTHHHHHHHHTTCEECSSSCSEEEECCCTTCCHHHHHHHHHHHHTTCEEEESCCC-SBSSTTCB
T ss_pred HHHhcCC--CEEEEEcCHHHHHHHHHcCCcccCCCCCEEEEeCCCCCCHHHHHHHHHHHHCCCEEEEECCC-CCCCCeee
Confidence 3333222 23678999999999999999999 888865 33333333
Q ss_pred HCC-CCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCC-hhhHHHHHHcCCeEEEEcCCC-CHHHHhh-
Q 001380 201 AAG-LPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDA-LAGVQAAKAAQMRCIAVTTTL-SEERLKE- 276 (1089)
Q Consensus 201 ~~g-l~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~-~~Di~aA~~aG~~~i~V~~g~-~~~~l~~- 276 (1089)
.++ +. .+|+.+.+.+....+||++.+|+.+++++|+++++|++|||+ .+|++||+.+|+.+++|.+|. ..+++..
T Consensus 155 ~~~~~~-~~~~~~~~~~~~~~~kpk~~~~~~~~~~lgi~~~~~i~iGD~~~nDi~~~~~aG~~~~~v~~g~~~~~~~~~~ 233 (250)
T 2c4n_A 155 ACGALC-AGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSSLDDIDSM 233 (250)
T ss_dssp CHHHHH-HHHHHHHCCCCEECSTTSTHHHHHHHHHHTCCGGGEEEEESCTTTHHHHHHHTTCEEEEESSSSCCGGGGSSC
T ss_pred cchHHH-HHHHHHhCCCceEeCCCCHHHHHHHHHHcCCCcceEEEECCCchhHHHHHHHcCCeEEEECCCCCChhhhhhc
Confidence 333 32 445666667777889999999999999999999999999999 599999999999999999987 4456653
Q ss_pred -cCCcEEecCcccC
Q 001380 277 -ASPSLIRKEIGSV 289 (1089)
Q Consensus 277 -~~~d~vi~dl~el 289 (1089)
..|+++++++.++
T Consensus 234 ~~~~~~v~~~~~el 247 (250)
T 2c4n_A 234 PFRPSWIYPSVAEI 247 (250)
T ss_dssp SSCCSEEESSGGGC
T ss_pred CCCCCEEECCHHHh
Confidence 6899999999887
|
| >1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-18 Score=186.60 Aligned_cols=134 Identities=16% Similarity=0.179 Sum_probs=115.7
Q ss_pred CCCCCCCCCCccccCCC-CCc--eeecccc-cCCCEEEEEEe-cCCCcchh-hhhhhHHHHHHHcCCCCE-EEEEEeCCC
Q 001380 424 RKTTPIVPEFPAKLDWL-NTA--PLQFRRD-LKGKVVVLDFW-TYCCINCM-HVLPDLEFLEKKYKDMPF-TVVGVHSAK 496 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~-~g~--~~~l~~~-~~gk~vll~Fw-a~wC~~C~-~~~p~l~~l~~~~~~~~v-~vi~v~~~~ 496 (1089)
..+|+++|+|++. ++ +|+ +++| ++ ++||++||+|| ++||++|+ .|+|.|++++++|+++++ .||+|+.
T Consensus 3 ~~~G~~aP~f~l~--~~~~g~~~~v~l-~~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~-- 77 (241)
T 1nm3_A 3 SMEGKKVPQVTFR--TRQGDKWVDVTT-SELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSV-- 77 (241)
T ss_dssp CCTTSBCCCCEEE--EEETTEEEEEEH-HHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEES--
T ss_pred ccCCCCCCCeEEE--cccCCCceeecH-HHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEc--
Confidence 4689999999965 43 676 8999 88 89999999999 99999999 999999999999998899 9999985
Q ss_pred CCChhcHHHHHHHHHHcCCc-cceeecCChhHHHHhCCC-----------ceeEEEEECCCCcEEEEecCCCch------
Q 001380 497 FDNEKDLEAIRNAVLRYGIS-HPVVNDGDMNLWRELGVN-----------SWPTFAVVGPNGKLLAQLAGEGHR------ 558 (1089)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~-~~v~~d~~~~l~~~~~v~-----------~~Pt~~lid~~G~i~~~~~G~~~~------ 558 (1089)
++.+.+++|+++++++ ||++.|.+++++++||+. ..|++||| ++|+|++.+.|....
T Consensus 78 ----d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~t~li-~~G~i~~~~~~~~~~~~~~~~ 152 (241)
T 1nm3_A 78 ----NDTFVMNAWKEDEKSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLV-KNGVVEKMFIEPNEPGDPFKV 152 (241)
T ss_dssp ----SCHHHHHHHHHHTTCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEE-ETTEEEEEEECCSCSSCCCSS
T ss_pred ----CCHHHHHHHHHhcCCCceEEEECCCcHHHHHhCceeecccccCcccceeEEEEE-ECCEEEEEEEeccCCCcccee
Confidence 3577899999999997 999999999999999986 45999999 999999998886443
Q ss_pred hhHHHHHHH
Q 001380 559 KDLDDLVEA 567 (1089)
Q Consensus 559 ~~l~~~l~~ 567 (1089)
...+++++.
T Consensus 153 ~~~~~il~~ 161 (241)
T 1nm3_A 153 SDADTMLKY 161 (241)
T ss_dssp SSHHHHHHH
T ss_pred cCHHHHHHH
Confidence 345555543
|
| >4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.8e-18 Score=172.47 Aligned_cols=141 Identities=18% Similarity=0.261 Sum_probs=109.7
Q ss_pred CCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCc-chhhhhhhHHHHHHHcCC--CCEEEEEEeCCCCCCh
Q 001380 424 RKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCI-NCMHVLPDLEFLEKKYKD--MPFTVVGVHSAKFDNE 500 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~-~C~~~~p~l~~l~~~~~~--~~v~vi~v~~~~~~~~ 500 (1089)
..+|.++|+|+++ +.+|+++++ ++++||+|||+||++||+ +|..+++.|.++++++++ .++.+|+|+++ +..
T Consensus 6 ~P~~~~~PdF~L~--d~~G~~v~l-~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvD--p~~ 80 (170)
T 4hde_A 6 KPLNWDLETFQFT--NQDGKPFGT-KDLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVD--PDL 80 (170)
T ss_dssp SCCCBCCCCCEEE--CTTSCEEEH-HHHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESC--TTT
T ss_pred cCCCCcCCCcEEE--CCCCCEEeH-HHhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecC--ccc
Confidence 4578899999965 559999999 999999999999999997 699999999999988864 36899999884 234
Q ss_pred hcHHHHHHHHHHcCCcc---ceeecCChh-HH----HHh----------CCCceeEEEEECCCCcEEEEecCCC--chhh
Q 001380 501 KDLEAIRNAVLRYGISH---PVVNDGDMN-LW----REL----------GVNSWPTFAVVGPNGKLLAQLAGEG--HRKD 560 (1089)
Q Consensus 501 ~~~~~~~~~~~~~~~~~---~v~~d~~~~-l~----~~~----------~v~~~Pt~~lid~~G~i~~~~~G~~--~~~~ 560 (1089)
|+++.+++|+++++.++ ..+.+.+.+ +. ..| .+.+.|++||||++|+|+..+.|.. ..++
T Consensus 81 Dtp~~l~~y~~~~~~~~~~~~~ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~~~~~~~ 160 (170)
T 4hde_A 81 DKPENLKAFIQKFTEDTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKKYSGISNTPYED 160 (170)
T ss_dssp CCHHHHHHHHTTTCSCCTTEEEEBCSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEEEESSSSCCHHH
T ss_pred ccHHHHHHHHHHcCCCCCCceecCcccHHHHHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEEECCCCCCCHHH
Confidence 78999999999998765 345554322 22 223 3445689999999999999987743 3456
Q ss_pred HHHHHHHHH
Q 001380 561 LDDLVEAAL 569 (1089)
Q Consensus 561 l~~~l~~~l 569 (1089)
+.+.|+.++
T Consensus 161 l~~~ik~Ll 169 (170)
T 4hde_A 161 IIRDMKRLA 169 (170)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666554
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4.7e-16 Score=175.76 Aligned_cols=256 Identities=13% Similarity=0.128 Sum_probs=183.3
Q ss_pred CCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC
Q 001380 598 SPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE 677 (1089)
Q Consensus 598 ~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~ 677 (1089)
.....|.++++++ +|+||+++...++|.+++.++.....+... . ...|.+++++++|+ +|+++..
T Consensus 42 ~~~~~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~------------~~~~~~i~~~~dg~-l~v~~~~ 106 (333)
T 2dg1_A 42 KKGLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVS-H------------KANPAAIKIHKDGR-LFVCYLG 106 (333)
T ss_dssp SSCCCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEEC-S------------SSSEEEEEECTTSC-EEEEECT
T ss_pred ccCccccCcEECC-CCCEEEEECCCCEEEEEeCCCCcEEEEeeC-C------------CCCcceEEECCCCc-EEEEeCC
Confidence 3456788999996 788999999999999999875443333211 0 13689999999998 9999877
Q ss_pred C----CEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC------CcEEEEEECCC
Q 001380 678 N----HALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG------QHQIWEHSTVD 747 (1089)
Q Consensus 678 n----~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~------~~~I~~~~~~~ 747 (1089)
+ +.|+++|++++.+..+..... ....|++++++++| .+|+++.. .+.|+++++.+
T Consensus 107 ~~~~~~~i~~~d~~~~~~~~~~~~~~--------------~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~ 171 (333)
T 2dg1_A 107 DFKSTGGIFAATENGDNLQDIIEDLS--------------TAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDF 171 (333)
T ss_dssp TSSSCCEEEEECTTSCSCEEEECSSS--------------SCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTS
T ss_pred CCCCCceEEEEeCCCCEEEEEEccCc--------------cCCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCC
Confidence 6 799999999888765432110 02478999999987 89998875 57899999887
Q ss_pred CeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCC-C-CeEEEecCCCCCCCCccccC
Q 001380 748 GVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKT-G-GSRLLAGGDPIFPDNLFKFG 825 (1089)
Q Consensus 748 g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~-~-~~~~~~g~~~~~~~~l~~~g 825 (1089)
+.+..+.. .+..|.+++++++|+.||+++...++|++++.++ + ....+... ....+.
T Consensus 172 ~~~~~~~~---------------~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~------~~~~~~ 230 (333)
T 2dg1_A 172 RTVTPIIQ---------------NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGAT------IPYYFT 230 (333)
T ss_dssp CCEEEEEE---------------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEE------EEEECC
T ss_pred CEEEEeec---------------CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccce------EEEecC
Confidence 77665531 2346889999999988999999889999999853 2 22221100 000000
Q ss_pred CCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCC-c
Q 001380 826 DRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNG-N 904 (1089)
Q Consensus 826 ~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G-~ 904 (1089)
+ ...|.++++|++|++||++..+++|.++|+++..+.++..... ..+.+..|.+++++++| .
T Consensus 231 ---~------~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~--------~~g~~~~~~~~~~~~dg~~ 293 (333)
T 2dg1_A 231 ---G------HEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGR--------DEGHMLRSTHPQFIPGTNQ 293 (333)
T ss_dssp ---S------SSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTG--------GGTCSCBCCEEEECTTSCE
T ss_pred ---C------CCCCCceEECCCCCEEEEEcCCCEEEEECCCCCEEEEEEcCCC--------ccccccCcceEEECCCCCE
Confidence 0 1368999999999999999989999999998776666642210 01134579999998886 7
Q ss_pred EEEEECCC-----CEEEEEeCC
Q 001380 905 LFIADTNN-----NIIRYLDLN 921 (1089)
Q Consensus 905 lyVad~~n-----~~I~~~~~~ 921 (1089)
|||+.... +.|.++++.
T Consensus 294 L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 294 LIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp EEEEEECGGGTCCEEEEEEECS
T ss_pred EEEEeCccCCCCCceEEEEecc
Confidence 99987653 345555543
|
| >3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-18 Score=176.58 Aligned_cols=148 Identities=18% Similarity=0.166 Sum_probs=115.9
Q ss_pred cCCCCCCCCCCccc-cCCCCCceeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCCh
Q 001380 423 NRKTTPIVPEFPAK-LDWLNTAPLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNE 500 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~-~~~~~g~~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~ 500 (1089)
..++|++||||+++ +.+-++++++| ++++||++||+|| +.||+.|..|++.|++++++|++.|++|||||+
T Consensus 22 ~~~VG~~APdF~l~a~~d~~~~~vsL-sd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~g~~vigiS~------ 94 (216)
T 3sbc_A 22 VAQVQKQAPTFKKTAVVDGVFDEVSL-DKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQGAQVLFAST------ 94 (216)
T ss_dssp CCCTTSBCCCCCEEEEETTEEEEECG-GGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHTTEEEEEEES------
T ss_pred hhhcCCcCCCCCCcceECCCCcEEeh-HHhCCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccCCceEEEeec------
Confidence 35799999999965 22335678999 9999999999999 899999999999999999999999999999987
Q ss_pred hcHHHHHHHHHHc-------CCccceeecCChhHHHHhCCC------ceeEEEEECCCCcEEEEecCC----CchhhHHH
Q 001380 501 KDLEAIRNAVLRY-------GISHPVVNDGDMNLWRELGVN------SWPTFAVVGPNGKLLAQLAGE----GHRKDLDD 563 (1089)
Q Consensus 501 ~~~~~~~~~~~~~-------~~~~~v~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~G~----~~~~~l~~ 563 (1089)
++....++|.+.. +++||++.|.++++++.|||. ..+.+||||++|+|++..... .+.+++.+
T Consensus 95 Ds~~sh~aw~~~~~~~~~~~~l~fpllsD~~~~vak~YGv~~~~~g~~~R~tFiID~~G~Ir~~~v~~~~~grn~dEiLr 174 (216)
T 3sbc_A 95 DSEYSLLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHITINDLPVGRNVDEALR 174 (216)
T ss_dssp SCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHH
T ss_pred CchhhHHHHHHHHHHhCCccCcccceEeCCCCHHHHHcCCeeccCCceeeEEEEECCCCeEEEEEEcCCCCCCCHHHHHH
Confidence 4555555555443 578999999999999999983 468999999999999874332 24455555
Q ss_pred HHHHHHHHhcccccc
Q 001380 564 LVEAALLFYGKKKLL 578 (1089)
Q Consensus 564 ~l~~~l~~~~~~~~l 578 (1089)
.|+. |+...+.|..
T Consensus 175 ~l~A-lQ~~~~~~~~ 188 (216)
T 3sbc_A 175 LVEA-FQWTDKNGTV 188 (216)
T ss_dssp HHHH-HHHHHHHCCB
T ss_pred HHHH-hhhHhhcCCC
Confidence 5544 3333333443
|
| >4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 2.27A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-18 Score=192.88 Aligned_cols=173 Identities=19% Similarity=0.191 Sum_probs=123.6
Q ss_pred CCCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 001380 76 WGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYL 155 (1089)
Q Consensus 76 ~~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (1089)
++++++|+||+||||++++.. .++.+.+|+.....++......+...+...+............+....+ .
T Consensus 105 ~~~~kaviFDlDGTLid~~~~-----~~la~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~l~~~~~~~i~~~----~ 175 (317)
T 4eze_A 105 LPANGIIAFDMDSTFIAEEGV-----DEIARELGMSTQITAITQQAMEGKLDFNASFTRRIGMLKGTPKAVLNAV----C 175 (317)
T ss_dssp CCCSCEEEECTBTTTBSSCHH-----HHHHHHTTCHHHHHHHHHHHHTTSSCHHHHHHHHHHTTTTCBHHHHHHH----H
T ss_pred CCCCCEEEEcCCCCccCCccH-----HHHHHHhCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHH----H
Confidence 467899999999999998753 5555666664333333222221111111111111111111222222222 1
Q ss_pred HHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcC----------CccCCCCCH
Q 001380 156 DKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSAD----------AFENLKPAP 225 (1089)
Q Consensus 156 ~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~----------~~~~~KP~~ 225 (1089)
+. ..++||+.++|+.|+++|++++|+||+....++.+++++|+. .+|+.++..+ +....||++
T Consensus 176 ~~------~~l~pg~~e~L~~Lk~~G~~v~IvSn~~~~~~~~~l~~lgl~-~~f~~~l~~~dg~~tg~i~~~~~~~kpkp 248 (317)
T 4eze_A 176 DR------MTLSPGLLTILPVIKAKGFKTAIISGGLDIFTQRLKARYQLD-YAFSNTVEIRDNVLTDNITLPIMNAANKK 248 (317)
T ss_dssp HT------CCBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCS-EEEEECEEEETTEEEEEECSSCCCHHHHH
T ss_pred hC------CEECcCHHHHHHHHHhCCCEEEEEeCccHHHHHHHHHHcCCC-eEEEEEEEeeCCeeeeeEecccCCCCCCH
Confidence 11 268999999999999999999999999999999999999997 8888776532 344569999
Q ss_pred HHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEE
Q 001380 226 DIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIA 264 (1089)
Q Consensus 226 ~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~ 264 (1089)
++|..+++++|+++++|+||||+.+|+.+|+++|+.+++
T Consensus 249 ~~~~~~~~~lgv~~~~~i~VGDs~~Di~aa~~AG~~va~ 287 (317)
T 4eze_A 249 QTLVDLAARLNIATENIIACGDGANDLPMLEHAGTGIAW 287 (317)
T ss_dssp HHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSSEEEEE
T ss_pred HHHHHHHHHcCCCcceEEEEeCCHHHHHHHHHCCCeEEe
Confidence 999999999999999999999999999999999987665
|
| >1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, struc genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis} SCOP: c.108.1.14 | Back alignment and structure |
|---|
Probab=99.74 E-value=3.2e-19 Score=195.31 Aligned_cols=208 Identities=13% Similarity=0.154 Sum_probs=140.5
Q ss_pred CCceEEEEecCCcccCCchHHHHHHH--HHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCC-----HH-HHHH
Q 001380 77 GKVSAVLFDMDGVLCNSEEPSRRAAV--DVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFD-----SE-AAKK 148 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~~~~a~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~ 148 (1089)
.++++|+||+||||+++...+..+.. +.+++.|+.+ ..++...+.+...+...+....++.... .. ....
T Consensus 3 ~~~k~v~fDlDGTL~~~~~~~~~~~~~l~~l~~~g~~~--~~~t~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~ 80 (264)
T 1yv9_A 3 LDYQGYLIDLDGTIYLGKEPIPAGKRFVERLQEKDLPF--LFVTNNTTKSPETVAQRLANEFDIHVPASLVYTATLATID 80 (264)
T ss_dssp CSCCEEEECCBTTTEETTEECHHHHHHHHHHHHTTCCE--EEEECCCSSCHHHHHHHHHHHSCCCCCGGGEEEHHHHHHH
T ss_pred ccCCEEEEeCCCeEEeCCEECcCHHHHHHHHHHCCCeE--EEEeCCCCCCHHHHHHHHHHhcCCCCChhhEEcHHHHHHH
Confidence 45899999999999998766654433 3455566553 2233334444555555444433432210 00 0000
Q ss_pred -----------------HHHHHHHHH------------hcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHh--HHH
Q 001380 149 -----------------RFFEIYLDK------------YAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIK--VDA 197 (1089)
Q Consensus 149 -----------------~~~~~~~~~------------~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~--~~~ 197 (1089)
.+.+.+.+. +.......++||+.++++.|+ +|+++ |+||..... ...
T Consensus 81 ~~~~~~~~~~~~~~g~~~l~~~l~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~l~-~g~~~-i~tn~~~~~~~~~~ 158 (264)
T 1yv9_A 81 YMKEANRGKKVFVIGEAGLIDLILEAGFEWDETNPDYVVVGLDTELSYEKVVLATLAIQ-KGALF-IGTNPDKNIPTERG 158 (264)
T ss_dssp HHHHHCCCSEEEEESCHHHHHHHHHTTCEECSSSCSEEEECCCTTCCHHHHHHHHHHHH-TTCEE-EESCCCSEEEETTE
T ss_pred HHHhhCCCCEEEEEeCHHHHHHHHHcCCcccCCCCCEEEEECCCCcCHHHHHHHHHHHh-CCCEE-EEECCCCcccCCCC
Confidence 111111111 001123467899999999997 88997 999976632 111
Q ss_pred -HHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCCh-hhHHHHHHcCCeEEEEcCCC-CHHHH
Q 001380 198 -NLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDAL-AGVQAAKAAQMRCIAVTTTL-SEERL 274 (1089)
Q Consensus 198 -~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~-~~~~l 274 (1089)
.++..++. .+|+.++++++...+||+|++|+.+++++|++|++|+||||++ +|+.+|+++||.+++|.+|. ..+++
T Consensus 159 ~~~~~~~l~-~~f~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~vGD~~~~Di~~a~~aG~~~i~v~~g~~~~~~l 237 (264)
T 1yv9_A 159 LLPGAGSVV-TFVETATQTKPVYIGKPKAIIMERAIAHLGVEKEQVIMVGDNYETDIQSGIQNGIDSLLVTSGFTPKSAV 237 (264)
T ss_dssp EEECHHHHH-HHHHHHHTCCCEECSTTSHHHHHHHHHHHCSCGGGEEEEESCTTTHHHHHHHHTCEEEEETTSSSCSSST
T ss_pred cccCCcHHH-HHHHHHhCCCccccCCCCHHHHHHHHHHcCCCHHHEEEECCCcHHHHHHHHHcCCcEEEECCCCCCHHHH
Confidence 12222343 6688888888888999999999999999999999999999995 99999999999999999987 44455
Q ss_pred hhc--CCcEEecCcccC
Q 001380 275 KEA--SPSLIRKEIGSV 289 (1089)
Q Consensus 275 ~~~--~~d~vi~dl~el 289 (1089)
.+. .|+++++++.++
T Consensus 238 ~~~~~~~d~v~~~l~el 254 (264)
T 1yv9_A 238 PTLPTPPTYVVDSLDEW 254 (264)
T ss_dssp TTCSSCCSEEESSGGGC
T ss_pred HhcCCCCCEEEecHHHH
Confidence 543 799999999888
|
| >3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A | Back alignment and structure |
|---|
Probab=99.73 E-value=6.9e-18 Score=180.29 Aligned_cols=141 Identities=14% Similarity=0.157 Sum_probs=114.9
Q ss_pred CCCCCCCCCCccccCCCCCceeeccccc--CCCEE-EEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCCh
Q 001380 424 RKTTPIVPEFPAKLDWLNTAPLQFRRDL--KGKVV-VLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNE 500 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~~~~l~~~~--~gk~v-ll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~ 500 (1089)
..+|+++|+|++.. .+| .+++.+++ +||++ |++||++||++|..+++.|++++++|+++++.||+||+ +..
T Consensus 5 ~~iG~~aPdF~l~~--~~G-~v~l~~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~---Ds~ 78 (249)
T 3a2v_A 5 PLIGERFPEMEVTT--DHG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSV---DSV 78 (249)
T ss_dssp CCTTSBCCCEEEEE--TTE-EEEETHHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEES---SCH
T ss_pred CCCCCCCCCeEEEc--CCC-CEecHHHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEEC---CCH
Confidence 46899999999654 477 68773456 99975 55789999999999999999999999988999999997 344
Q ss_pred hcHHHHHHHHHH---cCCccceeecCChhHHHHhCCC-------ceeEEEEECCCCcEEEEecCCC----chhhHHHHHH
Q 001380 501 KDLEAIRNAVLR---YGISHPVVNDGDMNLWRELGVN-------SWPTFAVVGPNGKLLAQLAGEG----HRKDLDDLVE 566 (1089)
Q Consensus 501 ~~~~~~~~~~~~---~~~~~~v~~d~~~~l~~~~~v~-------~~Pt~~lid~~G~i~~~~~G~~----~~~~l~~~l~ 566 (1089)
.+..+|.+.+++ ++++||++.|.+.++++.||+. ++|++||||++|+|++.+.|.. +.+++.+.|+
T Consensus 79 ~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~gr~~~Ellr~I~ 158 (249)
T 3a2v_A 79 FSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVK 158 (249)
T ss_dssp HHHHHHHHHHHHHTCCCCCSCEEECTTSHHHHHHTCCCTTCSSSCCEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCceeEEECCchHHHHHhCCccccCCCcccceEEEECCCCeEEEEEecCCcccchhHHHHHHHH
Confidence 455555554443 5789999999999999999997 8999999999999999977654 4677777777
Q ss_pred HHHH
Q 001380 567 AALL 570 (1089)
Q Consensus 567 ~~l~ 570 (1089)
.+..
T Consensus 159 alq~ 162 (249)
T 3a2v_A 159 ALKL 162 (249)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6554
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-16 Score=181.53 Aligned_cols=270 Identities=16% Similarity=0.228 Sum_probs=165.4
Q ss_pred CCCCCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeC---CCEE
Q 001380 595 LFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAK---KNLL 671 (1089)
Q Consensus 595 ~~~~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~---g~~l 671 (1089)
.+++.|..|.++++++ +|+|||++.. ++|.+++ +|+.. .+.... -..+ ....|.||+++|+ +..|
T Consensus 25 ~va~~l~~P~~ia~~p-dG~l~V~e~~-g~I~~i~-~g~~~-~~~~~~--v~~~------g~~~p~gia~~pdf~~~g~l 92 (352)
T 2ism_A 25 EVVGGLEVPWALAFLP-DGGMLIAERP-GRIRLFR-EGRLS-TYAELS--VYHR------GESGLLGLALHPRFPQEPYV 92 (352)
T ss_dssp EEECCCSCEEEEEECT-TSCEEEEETT-TEEEEEE-TTEEE-EEEECC--CCCS------TTCSEEEEEECTTTTTSCEE
T ss_pred EEECCCCCceEEEEcC-CCeEEEEeCC-CeEEEEE-CCCcc-Eeecce--Eeec------CCCCceeEEECCCCCCCCEE
Confidence 4567899999999997 8899999986 8999999 77633 332211 0111 1457999999998 6679
Q ss_pred EEEECCC-----CEEEEEECCCCeE---EEEec-CCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC------
Q 001380 672 YVADTEN-----HALREIDFVNDTV---RTLAG-NGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG------ 736 (1089)
Q Consensus 672 yVaD~~n-----~~I~~~d~~~g~v---~~~ag-~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~------ 736 (1089)
||+++.+ ++|.+++.+++.+ +++.. .... ......|.+|+++|+| .|||++..
T Consensus 93 Yv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~-----------~~~~h~~~~l~~~pdG-~Lyv~~G~~~~~~~ 160 (352)
T 2ism_A 93 YAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPAR-----------PHGLHSGGRIAFGPDG-MLYVTTGEVYEREL 160 (352)
T ss_dssp EEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCC-----------TTCCCCCCCEEECTTS-CEEEECCCTTCGGG
T ss_pred EEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCC-----------CCCCcCCceEEECCCC-CEEEEECCCCCCcc
Confidence 9999865 8999999876532 22221 1100 0123578999999988 89999742
Q ss_pred -------CcEEEEEECCCCeEEEEeCCCccccCCC--CCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCe
Q 001380 737 -------QHQIWEHSTVDGVTRAFSGDGYERNLNG--SSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGS 807 (1089)
Q Consensus 737 -------~~~I~~~~~~~g~~~~~~g~g~~~~~~g--~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~ 807 (1089)
.++|+++++++.. ..++. .....+ ......++.+|.||+++++++.||++|.+.+.++. .....+
T Consensus 161 ~~d~~~~~g~I~ri~~dG~~---p~~np-f~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~--~~~dei 234 (352)
T 2ism_A 161 AQDLASLGGKILRLTPEGEP---APGNP-FLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQG--YGHDEV 234 (352)
T ss_dssp GGCTTCSSSEEEEECTTSSB---CTTCT-TTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC--------CCCEE
T ss_pred ccCCCCCceEEEEEcCCCCC---CCCCc-ccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCC--CCCeEE
Confidence 2578888775421 00000 000000 00112456789999999955599999998877432 111222
Q ss_pred EEEe-cCCCCCCCCccccCCC--CCc-ccc---ccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCe-------EEEE
Q 001380 808 RLLA-GGDPIFPDNLFKFGDR--DGM-GSE---VLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNR-------VSTL 873 (1089)
Q Consensus 808 ~~~~-g~~~~~~~~l~~~g~~--dg~-~~~---~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~-------v~t~ 873 (1089)
..+. |+...++. ..|.. .+. ... .....|.|+++ .+|++||++..+++|.+++.+++. ...+
T Consensus 235 ~~i~~G~nyGwp~---~~g~~~~~~~~~p~~~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~ 310 (352)
T 2ism_A 235 NLIVPGGNYGWPR---VVGRGNDPRYRDPLYFWPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETA 310 (352)
T ss_dssp EEECTTCBCCTTT---CCSCCCCTTSCCCSEECTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEeccCCcCCCCc---ccCCCCCCCCcCCeEecCCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchhee
Confidence 2222 22111111 01110 000 000 11236899999 589999999999999999875332 1222
Q ss_pred eccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCC
Q 001380 874 AGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNN 912 (1089)
Q Consensus 874 ~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n 912 (1089)
. ..+..|.+|+++++|.|||++.+.
T Consensus 311 ~--------------~~~~rp~~v~~~pdG~lyv~~~~~ 335 (352)
T 2ism_A 311 L--------------SGFGRLREVQVGPDGALYVTTSNR 335 (352)
T ss_dssp E--------------ESSCCEEEEEECTTSCEEEEECST
T ss_pred c--------------ccCCCeeEEEECCCCcEEEEEeCC
Confidence 1 135679999999999999999763
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.8e-16 Score=177.22 Aligned_cols=274 Identities=15% Similarity=0.186 Sum_probs=174.2
Q ss_pred CCCCCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeC---CCEE
Q 001380 595 LFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAK---KNLL 671 (1089)
Q Consensus 595 ~~~~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~---g~~l 671 (1089)
.+++.|..|.+|++++ +|+|||++.. ++|.+++.+|+ ..+..... +.+ ....|.||+++|+ +..|
T Consensus 23 ~va~~l~~P~~ia~~p-dG~l~V~e~~-g~I~~~d~~G~--~~~~~~~v--~~~------g~~g~~gia~~pdf~~~g~l 90 (354)
T 3a9g_A 23 EVASDLEVPWSIAPLG-GGRYLVTERP-GRLVLISPSGK--KLVASFDV--ANV------GEAGLLGLALHPEFPKKSWV 90 (354)
T ss_dssp EEECSCSCEEEEEEEE-TTEEEEEETT-TEEEEECSSCE--EEEEECCC--CCS------TTCSEEEEEECTTTTTSCEE
T ss_pred EEeCCCCCCeEEEEcC-CCeEEEEeCC-CEEEEEeCCCc--eEeeccce--eec------CCCceeeEEeCCCCCcCCEE
Confidence 4567899999999998 8999999987 99999998887 33332110 001 1347999999997 5669
Q ss_pred EEEECC---C----CEEEEEECCCC--e---EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC---
Q 001380 672 YVADTE---N----HALREIDFVND--T---VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG--- 736 (1089)
Q Consensus 672 yVaD~~---n----~~I~~~d~~~g--~---v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~--- 736 (1089)
||+++. + ++|.+++.+++ . .+++.. +.. ......|.+|+++|+| .|||+...
T Consensus 91 yv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~-~~~-----------~~~~h~~~~l~~~pDG-~Lyvt~G~~~~ 157 (354)
T 3a9g_A 91 YLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLID-GIP-----------GAYIHNGGRIRFGPDG-MLYITTGDAAD 157 (354)
T ss_dssp EEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEE-EEE-----------CCSSCCCCCEEECTTS-CEEEECCCTTC
T ss_pred EEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEE-cCC-----------CCCCcCCceEEECCCC-cEEEEECCCCC
Confidence 999874 3 78999998765 1 222221 000 0113478899999988 89999642
Q ss_pred ----------CcEEEEEECCCCeEEEEeCCCccccCC-CCCCCCccccCCceEEEcCCCCEEEEEeCCCCe---EEEEEc
Q 001380 737 ----------QHQIWEHSTVDGVTRAFSGDGYERNLN-GSSSLNTSFAQPSGISLSPDFMEIYVADSESSS---IRALNL 802 (1089)
Q Consensus 737 ----------~~~I~~~~~~~g~~~~~~g~g~~~~~~-g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~---I~~~~~ 802 (1089)
.++|+++++++.. .. .+.. .......++.+|.||+++++.+.||++|.+.+. |.++..
T Consensus 158 ~~~~~d~~~~~G~I~ri~~dG~~----p~----~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~ 229 (354)
T 3a9g_A 158 PRLAQDLSSLAGKILRVDEEGRP----PA----DNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILK 229 (354)
T ss_dssp GGGGTCTTCCSSEEEEECTTSCC----CT----TSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECT
T ss_pred CccccCCCCCCeEEEEEcCCCCC----CC----CCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecC
Confidence 2578888765421 00 0000 001112457899999999954599999988765 443322
Q ss_pred CCCCeEEEecCCCCCCCCccccCCC--CCc-cccc----cccCceEEEE-------ccCCcEEEEeCCCCEEEEEeCCCC
Q 001380 803 KTGGSRLLAGGDPIFPDNLFKFGDR--DGM-GSEV----LLQHPLGVYC-------AKNGQIYVADSYNHKIKKLDPASN 868 (1089)
Q Consensus 803 ~~~~~~~~~g~~~~~~~~l~~~g~~--dg~-~~~~----~l~~P~gva~-------~~~G~lyVaD~~n~~I~~~d~~~~ 868 (1089)
|+...++. ..+.. .+. .... .-..|.|+++ +.+|++||++...++|.+++.++.
T Consensus 230 ---------G~nyGwp~---~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~ 297 (354)
T 3a9g_A 230 ---------GGNYGWPL---ATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDN 297 (354)
T ss_dssp ---------TCBCCTTT---CCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGG
T ss_pred ---------CCcCCCCc---ccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCC
Confidence 11111111 00100 000 0000 1235999999 468999999999999999988642
Q ss_pred -eEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECC-CC---------EEEEEeCCCC
Q 001380 869 -RVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTN-NN---------IIRYLDLNKE 923 (1089)
Q Consensus 869 -~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~-n~---------~I~~~~~~~~ 923 (1089)
.+......- ...+..|.+|+++++|.|||++.+ ++ +|.++.+.+.
T Consensus 298 g~~~~~~~~~----------~~~~~rp~~v~~~pDG~lyv~~~~~~G~g~~~~~~g~i~ri~~~g~ 353 (354)
T 3a9g_A 298 MEVRKISTFF----------KNVFGRLRDVVIDDDGGILISTSNRDGRGSLRAGDDKILKIVSEQH 353 (354)
T ss_dssp GCEEEEEEEC----------TTTSCCEEEEEECTTSCEEEEECTTSSSSCCCTTCSCEEEEEETTC
T ss_pred Ccccceeeec----------cCCCCCeeEEEECCCCcEEEEEeCCCCCcCCCCCCCEEEEEecCCC
Confidence 332111000 013567999999999999999974 44 8888887654
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-16 Score=176.53 Aligned_cols=204 Identities=13% Similarity=0.123 Sum_probs=151.7
Q ss_pred CCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC
Q 001380 657 NRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG 736 (1089)
Q Consensus 657 ~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~ 736 (1089)
..|.|++++++|+ |||+|..+++|+++|++++....+. .+ ..|.+|+++++| .|||++.+
T Consensus 32 ~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~~~~~~~-~~-----------------~~p~gia~~~dG-~l~vad~~ 91 (306)
T 2p4o_A 32 TFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQQIHAT-VE-----------------GKVSGLAFTSNG-DLVATGWN 91 (306)
T ss_dssp CCEEEEEECTTSC-EEEEETTTTEEEEECTTCCEEEEEE-CS-----------------SEEEEEEECTTS-CEEEEEEC
T ss_pred CCcceEEECCCCC-EEEEeCCCCeEEEECCCCceEEEEe-CC-----------------CCceeEEEcCCC-cEEEEecc
Confidence 3789999999988 9999999999999999876544432 11 269999999988 59999976
Q ss_pred C--cEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEE-ecC
Q 001380 737 Q--HQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLL-AGG 813 (1089)
Q Consensus 737 ~--~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~-~g~ 813 (1089)
+ .+|++++..++.+..+.... ....|.|+++.+++ .+|++|+.+++|+++++.++..++. ..+
T Consensus 92 ~~~~~v~~~d~~~g~~~~~~~~~-------------~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~~~v~~~~~ 157 (306)
T 2p4o_A 92 ADSIPVVSLVKSDGTVETLLTLP-------------DAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHP 157 (306)
T ss_dssp TTSCEEEEEECTTSCEEEEEECT-------------TCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECG
T ss_pred CCcceEEEEcCCCCeEEEEEeCC-------------CccccCcccccCCC-cEEEEECCCCeEEEEeCCCCcEeEEEECC
Confidence 4 36999998888887765321 12347888887665 9999999999999999875432221 110
Q ss_pred CCCCCCCccccCCCCCccccccccCceEEEEccCC-cEEEEeCCCCEEEEEeCCC-CeE---EEEeccCCCCCCCCcccc
Q 001380 814 DPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNG-QIYVADSYNHKIKKLDPAS-NRV---STLAGIGKAGFKDGAALA 888 (1089)
Q Consensus 814 ~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G-~lyVaD~~n~~I~~~d~~~-~~v---~t~~g~g~~g~~~g~~~~ 888 (1089)
. ..... ....+..|.|| +++| .+||+|+.+++|.+|+.++ +.+ ..+
T Consensus 158 ~-------~~~~~-----~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~--------------- 208 (306)
T 2p4o_A 158 M-------LARSN-----SESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIF--------------- 208 (306)
T ss_dssp G-------GSCSS-----TTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEE---------------
T ss_pred c-------ccccc-----ccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEE---------------
Confidence 0 00000 01236689998 5555 7999999999999999864 322 111
Q ss_pred cccCCCceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 889 AQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 889 ~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
..+..|.||++|++|+|||++..+++|.+|++++.
T Consensus 209 ~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~ 243 (306)
T 2p4o_A 209 VEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS 243 (306)
T ss_dssp EESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC
T ss_pred eccCCCCCeEECCCCCEEEEeCCCCeEEEECCCCC
Confidence 13467999999999999999999999999998764
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-18 Score=170.97 Aligned_cols=120 Identities=18% Similarity=0.257 Sum_probs=104.5
Q ss_pred CCCCCCCC-CccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCC-CCEEEEEEeCCCCCChhc
Q 001380 425 KTTPIVPE-FPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD-MPFTVVGVHSAKFDNEKD 502 (1089)
Q Consensus 425 ~~g~~~P~-f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~-~~v~vi~v~~~~~~~~~~ 502 (1089)
..++.+|+ |++. +++| .+++ ++++||++||+||++||++|+.++|.|++++++|++ .++.+++|++ +++
T Consensus 3 ~~~~~~P~~f~l~--~~~g-~~~l-~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~-----d~~ 73 (146)
T 1o8x_A 3 GLDKYLPGIEKLR--RGDG-EVEV-KSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTW-----DEE 73 (146)
T ss_dssp CGGGTSTTCCEEE--ETTE-EEEG-GGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEEC-----CCS
T ss_pred chHhhCCCceEEE--cCCC-CCcH-HHhCCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeC-----CCC
Confidence 35788999 8854 5699 9999 899999999999999999999999999999999984 6899999976 457
Q ss_pred HHHHHHHHHHcCC-ccceee-cCChhHHHHhCCCceeEEEEEC-CCCcEEEEec
Q 001380 503 LEAIRNAVLRYGI-SHPVVN-DGDMNLWRELGVNSWPTFAVVG-PNGKLLAQLA 553 (1089)
Q Consensus 503 ~~~~~~~~~~~~~-~~~v~~-d~~~~l~~~~~v~~~Pt~~lid-~~G~i~~~~~ 553 (1089)
.+.+++++++++. .+++.. |.+.++++.|+|.++|+++||| ++|+++.+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~~ 127 (146)
T 1o8x_A 74 EDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRA 127 (146)
T ss_dssp HHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCH
T ss_pred HHHHHHHHHHCCceeeccchhhHHHHHHHHhCCCCCCEEEEEECCCCeEEEecc
Confidence 7889999999874 466654 6678899999999999999999 9999998743
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.1e-19 Score=177.86 Aligned_cols=122 Identities=18% Similarity=0.202 Sum_probs=104.0
Q ss_pred cCCCCCCCCCC-ccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCC-CCEEEEEEeCCCCCCh
Q 001380 423 NRKTTPIVPEF-PAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD-MPFTVVGVHSAKFDNE 500 (1089)
Q Consensus 423 ~~~~g~~~P~f-~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~-~~v~vi~v~~~~~~~~ 500 (1089)
...+|+++|+| ++ .+.+| .+++ ++++||++||+||++||++|+.++|.|++++++|++ .++.||+|++ +
T Consensus 21 ~~~vG~~~P~f~~l--~~~~g-~v~l-~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~-----d 91 (165)
T 3s9f_A 21 MSGVAKHLGEALKL--RKQAD-TADM-DSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASW-----D 91 (165)
T ss_dssp -CHHHHHHHHTSCE--EETTE-EECS-GGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEEC-----C
T ss_pred hhhhcccCCcceee--ecCCC-cccH-HHcCCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEec-----C
Confidence 34578889998 74 45688 9999 899999999999999999999999999999999986 6899999976 4
Q ss_pred hcHHHHHHHHHHcCCc-cceeecCC-hhHHHHhCCCceeEEEEECCC-CcEEEEec
Q 001380 501 KDLEAIRNAVLRYGIS-HPVVNDGD-MNLWRELGVNSWPTFAVVGPN-GKLLAQLA 553 (1089)
Q Consensus 501 ~~~~~~~~~~~~~~~~-~~v~~d~~-~~l~~~~~v~~~Pt~~lid~~-G~i~~~~~ 553 (1089)
++.+.+++++++++.. +++..+.. .++++.|+|.++|+++|||++ |+|+.+..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~lid~~~G~iv~~~~ 147 (165)
T 3s9f_A 92 EEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGLNADTGDTVTTRA 147 (165)
T ss_dssp CSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCH
T ss_pred CCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCCCCCCEEEEEeCCCCEEEeccc
Confidence 6778899999988753 45554433 789999999999999999998 99998743
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=5.1e-15 Score=168.03 Aligned_cols=240 Identities=14% Similarity=0.190 Sum_probs=181.4
Q ss_pred CCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC-CCC
Q 001380 602 FPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT-ENH 679 (1089)
Q Consensus 602 ~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~-~n~ 679 (1089)
.|.++++++.++.+|+++...+.|.++|.+ |+.+..+....... ........|.+++++++|+.+|+++. .++
T Consensus 90 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 164 (353)
T 3vgz_A 90 KPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKR-----TEEVRPLQPRELVADDATNTVYISGIGKES 164 (353)
T ss_dssp CCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCC-----CSSCCCCEEEEEEEETTTTEEEEEEESSSC
T ss_pred CcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcc-----ccccCCCCCceEEECCCCCEEEEEecCCCc
Confidence 478899998667799999999999999986 77777665531110 00112235899999999999999994 578
Q ss_pred EEEEEECCCCeEEEEec-CCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCc
Q 001380 680 ALREIDFVNDTVRTLAG-NGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGY 758 (1089)
Q Consensus 680 ~I~~~d~~~g~v~~~ag-~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~ 758 (1089)
.|+++|+.++.+..... .+ ..|.+++++|+|+.+|+++. ++.|+.+|..++........+.
T Consensus 165 ~i~~~d~~~~~~~~~~~~~~-----------------~~~~~~~~s~dg~~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~ 226 (353)
T 3vgz_A 165 VIWVVDGGNIKLKTAIQNTG-----------------KMSTGLALDSEGKRLYTTNA-DGELITIDTADNKILSRKKLLD 226 (353)
T ss_dssp EEEEEETTTTEEEEEECCCC-----------------TTCCCCEEETTTTEEEEECT-TSEEEEEETTTTEEEEEEECCC
T ss_pred eEEEEcCCCCceEEEecCCC-----------------CccceEEECCCCCEEEEEcC-CCeEEEEECCCCeEEEEEEcCC
Confidence 89999998887665542 22 25889999999999999986 6899999999887654432210
Q ss_pred cccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccC
Q 001380 759 ERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQH 838 (1089)
Q Consensus 759 ~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~ 838 (1089)
......|.+++++++|+.+|+++...+.|..++..++....... +..
T Consensus 227 ----------~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-----------------------~~~ 273 (353)
T 3vgz_A 227 ----------DGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA-----------------------APE 273 (353)
T ss_dssp ----------SSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE-----------------------CSS
T ss_pred ----------CCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE-----------------------cCC
Confidence 01123578999999999999999999999999998766533221 124
Q ss_pred ceEEEEccCCc-EEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEEEECC
Q 001380 839 PLGVYCAKNGQ-IYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADTN 911 (1089)
Q Consensus 839 P~gva~~~~G~-lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~~ 911 (1089)
|.+++++++|+ +|+++..++.|.++|..++.+......+ ..|.+++++++|+ |||+...
T Consensus 274 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~--------------~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 274 SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP--------------THPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC--------------SEEEEEEECTTSCEEEEEEEC
T ss_pred CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC--------------CCCCeEEEcCCCCEEEEEEcc
Confidence 56799999996 9999999999999999887765443221 2489999999997 9998765
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-15 Score=171.97 Aligned_cols=279 Identities=15% Similarity=0.164 Sum_probs=186.7
Q ss_pred CCCCceEEEeecCCeEEEEeCC--CCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC
Q 001380 600 LKFPGKLAIDILNNRLFISDSN--HNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE 677 (1089)
Q Consensus 600 l~~P~~vavd~~~g~L~vsd~~--~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~ 677 (1089)
...|..+++++ +|+||+++.. ++.|.+++.++.....+..... ....|.+++++|+|+.||+++..
T Consensus 39 ~~~p~~~a~sp-dg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~-----------~~~~p~~~a~spdg~~l~~~~~~ 106 (347)
T 3hfq_A 39 TQNPTYLALSA-KDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVA-----------PGTPPAYVAVDEARQLVYSANYH 106 (347)
T ss_dssp CSCCCCEEECT-TCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEE-----------ESCCCSEEEEETTTTEEEEEETT
T ss_pred cCCcceEEEcc-CCeEEEEEecCCCceEEEEEecCCcEEEeeeeec-----------CCCCCEEEEECCCCCEEEEEeCC
Confidence 36788999998 7779988863 6789999886544333322100 12378999999999999999988
Q ss_pred CCEEEEEECC-CCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECC-CCeEEEEeC
Q 001380 678 NHALREIDFV-NDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTV-DGVTRAFSG 755 (1089)
Q Consensus 678 n~~I~~~d~~-~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~-~g~~~~~~g 755 (1089)
++.|+.++.+ ++....+......+. .+...+....|++++++|+|+ +|+++.+.+.|+.|+.. ++.+.....
T Consensus 107 ~~~v~v~~~~~~g~~~~~~~~~~~~~-----~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~ 180 (347)
T 3hfq_A 107 KGTAEVMKIAADGALTLTDTVQHSGH-----GPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSV 180 (347)
T ss_dssp TTEEEEEEECTTSCEEEEEEEECCCC-----CSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEE
T ss_pred CCEEEEEEeCCCCCeeecceeecCCC-----CCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeee
Confidence 8999999984 455444432111110 111223345789999999997 99999999999999987 565544321
Q ss_pred CCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCC--CCeEEEecCCCCCCCCccccCCCCCcccc
Q 001380 756 DGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKT--GGSRLLAGGDPIFPDNLFKFGDRDGMGSE 833 (1089)
Q Consensus 756 ~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~--~~~~~~~g~~~~~~~~l~~~g~~dg~~~~ 833 (1089)
... ..-..|.+++++|+|+.||+++...+.|+.++.+. +....+..... .+ .+ .
T Consensus 181 ~~~-----------~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~-~~---------~~---~ 236 (347)
T 3hfq_A 181 LTM-----------EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKT-IP---------AD---Y 236 (347)
T ss_dssp EEC-----------CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES-SC---------TT---C
T ss_pred EEc-----------CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeee-cC---------CC---C
Confidence 000 01125789999999988999999999998888763 43322211000 00 00 0
Q ss_pred ccccCceEEEEccCCc-EEEEeCCCCEEEEEeCC-CCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEEEEC
Q 001380 834 VLLQHPLGVYCAKNGQ-IYVADSYNHKIKKLDPA-SNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADT 910 (1089)
Q Consensus 834 ~~l~~P~gva~~~~G~-lyVaD~~n~~I~~~d~~-~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~ 910 (1089)
.....|.+++++++|+ |||++..++.|.+++.+ ++.+..+..... .-..|.+++++++|+ ||+++.
T Consensus 237 ~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-----------~~~~~~~~~~spdg~~l~v~~~ 305 (347)
T 3hfq_A 237 TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIST-----------EGDFPRDFDLDPTEAFVVVVNQ 305 (347)
T ss_dssp CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEEC-----------SSSCCCEEEECTTSSEEEEEET
T ss_pred CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEec-----------CCCCcCeEEECCCCCEEEEEEc
Confidence 0124589999999996 89999999999999864 334433322100 124599999999996 999999
Q ss_pred CCCEEEEEeCCCCCceEEEEe
Q 001380 911 NNNIIRYLDLNKEEPELQTLE 931 (1089)
Q Consensus 911 ~n~~I~~~~~~~~~~~~~~l~ 931 (1089)
.+++|.+++.+..+..+..+.
T Consensus 306 ~~~~v~v~~~d~~tg~l~~~~ 326 (347)
T 3hfq_A 306 NTDNATLYARDLTSGKLSLLQ 326 (347)
T ss_dssp TTTEEEEEEECTTTCCEEEEE
T ss_pred CCCcEEEEEEeCCCCeEEecc
Confidence 999999995554322445443
|
| >3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-17 Score=172.52 Aligned_cols=138 Identities=20% Similarity=0.263 Sum_probs=114.1
Q ss_pred cCCCCCCCCCCccc--cCCCCCceeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCC
Q 001380 423 NRKTTPIVPEFPAK--LDWLNTAPLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDN 499 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~--~~~~~g~~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~ 499 (1089)
..++|++||+|++. +.+.+|++++| ++++||+|||+|| +.||+.|..|+..+++++++|++.+++|||||+
T Consensus 25 ~~~vG~~APdF~~~a~l~d~~g~~vsL-sd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~g~~vigiS~----- 98 (219)
T 3tue_A 25 NAKINSPAPSFEEVALMPNGSFKKISL-SSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELNCEVLACSI----- 98 (219)
T ss_dssp CCCTTSBCCCCEEEEECTTSCEEEEEG-GGGTTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTTTEEEEEEES-----
T ss_pred ccccCCcCCCCcccccccCCCCcEEeh-HHhCCCEEEEEEecccCCCCCchhHhhHHHHHhhhccCCcEEEEeeC-----
Confidence 45799999999853 44557889999 9999999999999 899999999999999999999999999999996
Q ss_pred hhcHHHHHHHHHHc-------CCccceeecCChhHHHHhCCC------ceeEEEEECCCCcEEEEecCC----CchhhHH
Q 001380 500 EKDLEAIRNAVLRY-------GISHPVVNDGDMNLWRELGVN------SWPTFAVVGPNGKLLAQLAGE----GHRKDLD 562 (1089)
Q Consensus 500 ~~~~~~~~~~~~~~-------~~~~~v~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~G~----~~~~~l~ 562 (1089)
|+....++|.++. +++||++.|.+++++++|||. ....+||||++|+|++.+... .+.+++.
T Consensus 99 -Ds~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~va~~yGv~~~~~g~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EvL 177 (219)
T 3tue_A 99 -DSEYAHLQWTLQDRKKGGLGTMAIPILADKTKNIARSYGVLEESQGVAYRGLFIIDPHGMLRQITVNDMPVGRSVEEVL 177 (219)
T ss_dssp -SCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHH
T ss_pred -CchhhHHHHhhhhHHhcCccccccccccCcccHHHHHcCCcccCCCeeEEEEEEECCCCeEEEEEEecCCCCCCHHHHH
Confidence 5666666776653 688999999999999999983 346899999999999875322 2445555
Q ss_pred HHHHH
Q 001380 563 DLVEA 567 (1089)
Q Consensus 563 ~~l~~ 567 (1089)
+.|+.
T Consensus 178 r~l~a 182 (219)
T 3tue_A 178 RLLEA 182 (219)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.72 E-value=6e-18 Score=166.74 Aligned_cols=119 Identities=19% Similarity=0.230 Sum_probs=102.8
Q ss_pred CCCCCCCCC-ccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcC-CCCEEEEEEeCCCCCChhc
Q 001380 425 KTTPIVPEF-PAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYK-DMPFTVVGVHSAKFDNEKD 502 (1089)
Q Consensus 425 ~~g~~~P~f-~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~-~~~v~vi~v~~~~~~~~~~ 502 (1089)
.+|+.+|+| ++ .+.+| .+++ ++++||++||+||++||++|+.++|.|++++++|+ +.++.+++|++ +++
T Consensus 3 ~~g~~~p~~~~l--~~~~g-~~~l-~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~-----d~~ 73 (144)
T 1o73_A 3 GLAKYLPGATNL--LSKSG-EVSL-GSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISW-----DEN 73 (144)
T ss_dssp GGGGTSCTTCCB--BCTTS-CBCS-GGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEEC-----CSS
T ss_pred chhhhCccceEe--ecCCC-cCcH-HHhCCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeC-----CCC
Confidence 468899997 85 45699 9999 89999999999999999999999999999999998 46899999976 456
Q ss_pred HHHHHHHHHHcCC-ccceee-cCChhHHHHhCCCceeEEEEEC-CCCcEEEEe
Q 001380 503 LEAIRNAVLRYGI-SHPVVN-DGDMNLWRELGVNSWPTFAVVG-PNGKLLAQL 552 (1089)
Q Consensus 503 ~~~~~~~~~~~~~-~~~v~~-d~~~~l~~~~~v~~~Pt~~lid-~~G~i~~~~ 552 (1089)
.+.+++++++++. .+++.. |...++++.|+|.++|++++|| ++|+++.+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~ 126 (144)
T 1o73_A 74 ESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQ 126 (144)
T ss_dssp HHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTCCSSSEEEEEETTTCCEEESC
T ss_pred HHHHHHHHHhCCceEeeccchhHHHHHHHHcCCCCCCEEEEEECCCCeEEecc
Confidence 7889999999874 345543 5567899999999999999999 899999764
|
| >2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A | Back alignment and structure |
|---|
Probab=99.72 E-value=9.2e-19 Score=190.85 Aligned_cols=208 Identities=17% Similarity=0.144 Sum_probs=141.2
Q ss_pred CCCceEEEEecCCcccCCchHHHHHHH--HHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCH-----HHHHH
Q 001380 76 WGKVSAVLFDMDGVLCNSEEPSRRAAV--DVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDS-----EAAKK 148 (1089)
Q Consensus 76 ~~~~k~ViFD~DGTL~d~~~~~~~a~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 148 (1089)
++++|+|+||+||||+++...+..++. +.+++.|+.. ...+...+.....+...+.. .+...... .....
T Consensus 4 ~~~ik~i~fDlDGTLld~~~~~~~~~~ai~~l~~~G~~~--~~~t~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~~~ 80 (259)
T 2ho4_A 4 RRALKAVLVDLNGTLHIEDAAVPGAQEALKRLRATSVMV--RFVTNTTKETKKDLLERLKK-LEFEISEDEIFTSLTAAR 80 (259)
T ss_dssp --CCCEEEEESSSSSCC---CCTTHHHHHHHHHTSSCEE--EEEECCSSCCHHHHHHHHHH-TTCCCCGGGEEEHHHHHH
T ss_pred hhhCCEEEEeCcCcEEeCCEeCcCHHHHHHHHHHCCCeE--EEEeCCCCcCHHHHHHHHHH-cCCCccHHHeecHHHHHH
Confidence 346899999999999998876544443 4555667653 22333445666666655543 34432110 01111
Q ss_pred HHHHHH------------HHHhcCC-------------CCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCC
Q 001380 149 RFFEIY------------LDKYAKP-------------NSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAG 203 (1089)
Q Consensus 149 ~~~~~~------------~~~~~~~-------------~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~g 203 (1089)
.+.... .+.+... ....+++++.++++.|+ +|+++ ++||.........+...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~-i~t~~~~~~~~~~~~~~~ 158 (259)
T 2ho4_A 81 NLIEQKQVRPMLLLDDRALPEFTGVQTQDPNAVVIGLAPEHFHYQLLNQAFRLLL-DGAPL-IAIHKARYYKRKDGLALG 158 (259)
T ss_dssp HHHHHHTCCEEEESCGGGGGGGTTCCCSSCCEEEECCCGGGCBHHHHHHHHHHHH-TTCCE-EESCCCSEEEETTEEEEC
T ss_pred HHHHHcCCeEEEEeCHHHHHHHHHcCCCCCCEEEEecCCCCCCHHHHHHHHHHHH-CCCEE-EEECCCCcCcccCCcccC
Confidence 111110 0000000 01136899999999999 89999 999987666555566677
Q ss_pred CCCCCcc---EEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCCh-hhHHHHHHcCCeEEEEcCCC-CHHHHh--h
Q 001380 204 LPVSMFD---AIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDAL-AGVQAAKAAQMRCIAVTTTL-SEERLK--E 276 (1089)
Q Consensus 204 l~~~~fd---~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~-~~~~l~--~ 276 (1089)
+. .+|+ .++++++...+||+|.+|+.+++++|++|++|+||||+. +|+.+|+++|+++++|.+|. ...+.. .
T Consensus 159 ~~-~~~~~~~~~~~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~~~iGD~~~~Di~~a~~aG~~~i~v~~g~~~~~~~~~~~ 237 (259)
T 2ho4_A 159 PG-PFVTALEYATDTKAMVVGKPEKTFFLEALRDADCAPEEAVMIGDDCRDDVDGAQNIGMLGILVKTGKYKAADEEKIN 237 (259)
T ss_dssp SH-HHHHHHHHHHTCCCEECSTTSHHHHHHHGGGGTCCGGGEEEEESCTTTTHHHHHHTTCEEEEESSTTCCTTGGGGSS
T ss_pred Cc-HHHHHHHHHhCCCceEecCCCHHHHHHHHHHcCCChHHEEEECCCcHHHHHHHHHCCCcEEEECCCCCCcccccccC
Confidence 75 6776 566778888899999999999999999999999999999 99999999999999999985 333322 4
Q ss_pred cCCcEEecCcccC
Q 001380 277 ASPSLIRKEIGSV 289 (1089)
Q Consensus 277 ~~~d~vi~dl~el 289 (1089)
..|+++++++.++
T Consensus 238 ~~~~~~~~~l~~l 250 (259)
T 2ho4_A 238 PPPYLTCESFPHA 250 (259)
T ss_dssp SCCSEEESCHHHH
T ss_pred CCCCEEECCHHHH
Confidence 6899999999888
|
| >1rku_A Homoserine kinase; phosphoserine phosphatase, phosphoserine:homoserine phosphotransferase, THRH, phosphoserine phosphoryl donor; 1.47A {Pseudomonas aeruginosa} SCOP: c.108.1.11 PDB: 1rkv_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-17 Score=174.91 Aligned_cols=185 Identities=13% Similarity=0.167 Sum_probs=133.4
Q ss_pred ceEEEEecCCcccCCchHHHHHHHHHHHHcCCCC------CHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 001380 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEV------TVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFE 152 (1089)
Q Consensus 79 ~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (1089)
+++|+||+||||++ .++.++++++|++. ....+..+.+.. ...+.. .+. ..+ .+.+
T Consensus 2 ~k~viFD~DGTL~d------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~---~~~----~~~~ 63 (206)
T 1rku_A 2 MEIACLDLEGVLVP------EIWIAFAEKTGIDALKATTRDIPDYDVLMKQR----LRILDE-HGL---KLG----DIQE 63 (206)
T ss_dssp CEEEEEESBTTTBC------CHHHHHHHHHTCGGGGCCTTTCCCHHHHHHHH----HHHHHH-TTC---CHH----HHHH
T ss_pred CcEEEEccCCcchh------hHHHHHHHHcCChHHHHHhcCcCCHHHHHHHH----HHHHHH-CCC---CHH----HHHH
Confidence 68999999999999 46788888888763 111122121111 111111 111 111 1111
Q ss_pred HHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCc-cEEEEcCCcc--C-CCCCHHHH
Q 001380 153 IYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMF-DAIVSADAFE--N-LKPAPDIF 228 (1089)
Q Consensus 153 ~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~f-d~i~~~~~~~--~-~KP~~~~~ 228 (1089)
.+ . ...++||+.++|+.|+++ ++++|+||.....++..++++|+. .+| +.++++++.. . .||+|.++
T Consensus 64 ----~~-~--~~~~~~g~~~~l~~l~~~-~~~~i~s~~~~~~~~~~l~~~gl~-~~f~~~~~~~~~~~~~~~~~p~p~~~ 134 (206)
T 1rku_A 64 ----VI-A--TLKPLEGAVEFVDWLRER-FQVVILSDTFYEFSQPLMRQLGFP-TLLCHKLEIDDSDRVVGYQLRQKDPK 134 (206)
T ss_dssp ----HH-T--TCCCCTTHHHHHHHHHTT-SEEEEEEEEEHHHHHHHHHHTTCC-CEEEEEEEECTTSCEEEEECCSSSHH
T ss_pred ----HH-H--hcCCCccHHHHHHHHHhc-CcEEEEECChHHHHHHHHHHcCCc-ceecceeEEcCCceEEeeecCCCchH
Confidence 12 1 237899999999999999 999999999999999999999997 889 5777765542 1 25888999
Q ss_pred HHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEE-ecCcccCCHHHHHh
Q 001380 229 LSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLI-RKEIGSVSLNDILT 296 (1089)
Q Consensus 229 ~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~v-i~dl~el~i~~ll~ 296 (1089)
..+++++++.+++|+||||+.+|+.+|+++|+.++ +. ..+++....++++ +.++.++ .++|.
T Consensus 135 ~~~l~~l~~~~~~~~~iGD~~~Di~~a~~aG~~~~-~~---~~~~~~~~~~~~~~~~~~~~l--~~~l~ 197 (206)
T 1rku_A 135 RQSVIAFKSLYYRVIAAGDSYNDTTMLSEAHAGIL-FH---APENVIREFPQFPAVHTYEDL--KREFL 197 (206)
T ss_dssp HHHHHHHHHTTCEEEEEECSSTTHHHHHHSSEEEE-ES---CCHHHHHHCTTSCEECSHHHH--HHHHH
T ss_pred HHHHHHHHhcCCEEEEEeCChhhHHHHHhcCccEE-EC---CcHHHHHHHhhhccccchHHH--HHHHH
Confidence 99999999999999999999999999999999865 32 3445666677775 8888887 44543
|
| >2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.4e-18 Score=165.23 Aligned_cols=103 Identities=16% Similarity=0.238 Sum_probs=97.2
Q ss_pred CCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEE
Q 001380 166 GFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVI 245 (1089)
Q Consensus 166 ~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~V 245 (1089)
++||+.++|+.|+++|++++|+||+....++..++.+|+. .+|+.++++++....||++++|+++++++|++|++++||
T Consensus 19 ~~~~~~~~l~~L~~~G~~~~i~S~~~~~~~~~~l~~~~l~-~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~v 97 (137)
T 2pr7_A 19 DQRRWRNLLAAAKKNGVGTVILSNDPGGLGAAPIRELETN-GVVDKVLLSGELGVEKPEEAAFQAAADAIDLPMRDCVLV 97 (137)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECSCCGGGGHHHHHHHHT-TSSSEEEEHHHHSCCTTSHHHHHHHHHHTTCCGGGEEEE
T ss_pred cCccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHCChH-hhccEEEEeccCCCCCCCHHHHHHHHHHcCCCcccEEEE
Confidence 4678899999999999999999999999999999999996 999999999989999999999999999999999999999
Q ss_pred cCChhhHHHHHHcCCeEEEEcCCC
Q 001380 246 EDALAGVQAAKAAQMRCIAVTTTL 269 (1089)
Q Consensus 246 GD~~~Di~aA~~aG~~~i~V~~g~ 269 (1089)
||+.+|+++|+++|+.++++.++.
T Consensus 98 gD~~~di~~a~~~G~~~i~~~~~~ 121 (137)
T 2pr7_A 98 DDSILNVRGAVEAGLVGVYYQQFD 121 (137)
T ss_dssp ESCHHHHHHHHHHTCEEEECSCHH
T ss_pred cCCHHHHHHHHHCCCEEEEeCChH
Confidence 999999999999999999998764
|
| >2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; 2633731, structural genomics, joint center for structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis} SCOP: c.108.1.20 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-17 Score=179.22 Aligned_cols=194 Identities=14% Similarity=0.135 Sum_probs=132.3
Q ss_pred CCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhh-hc-C-CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 001380 77 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLP-FM-G-TGEANFLGGVASVKGVKGFDSEAAKKRFFEI 153 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~-~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (1089)
.++++|+||+||||+++... ..+++.++. .....+.. +. + .+.......+..... . . ..+++.+.
T Consensus 4 ~~~k~viFD~DGTL~d~ds~-----~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~-~---~~~~~~~~ 71 (236)
T 2fea_A 4 TRKPFIICDFDGTITMNDNI-----INIMKTFAP-PEWMALKDGVLSKTLSIKEGVGRMFGLLP--S-S---LKEEITSF 71 (236)
T ss_dssp CCCEEEEECCTTTTBSSCHH-----HHHHHHHSC-THHHHHHHHHHTTSSCHHHHHHHHHTTSB--G-G---GHHHHHHH
T ss_pred CCCcEEEEeCCCCCCccchH-----HHHHHHhch-hhHHHHHHHHHhCcCcHHHHHHHHHHhcC--C-C---hHHHHHHH
Confidence 35799999999999976432 122233332 11222211 21 1 234444444433221 1 1 11222222
Q ss_pred HHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccC--------CCCCH
Q 001380 154 YLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFEN--------LKPAP 225 (1089)
Q Consensus 154 ~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~--------~KP~~ 225 (1089)
+... ..++||+.++|+.|+++|++++|+||+....++..++ ++. .+ +.+++++.... .||+|
T Consensus 72 ~~~~------~~~~pg~~~~l~~L~~~g~~~~ivS~~~~~~~~~~l~--~l~-~~-~~v~~~~~~~~~~~~~~~~~kp~p 141 (236)
T 2fea_A 72 VLED------AKIREGFREFVAFINEHEIPFYVISGGMDFFVYPLLE--GIV-EK-DRIYCNHASFDNDYIHIDWPHSCK 141 (236)
T ss_dssp HHHH------CCBCTTHHHHHHHHHHHTCCEEEEEEEEHHHHHHHHT--TTS-CG-GGEEEEEEECSSSBCEEECTTCCC
T ss_pred HhcC------CCCCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHh--cCC-CC-CeEEeeeeEEcCCceEEecCCCCc
Confidence 1111 2789999999999999999999999999988888888 774 55 88998876554 78998
Q ss_pred HH-HH-------HHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcC-CcEEecCcccCCHHHHHh
Q 001380 226 DI-FL-------SASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEAS-PSLIRKEIGSVSLNDILT 296 (1089)
Q Consensus 226 ~~-~~-------~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~-~d~vi~dl~el~i~~ll~ 296 (1089)
.+ +. .+++++++++++|+||||+.+|+.+|+++|+.++. ++ ..+.+...+ +++++.++.++ .++|.
T Consensus 142 ~~~~~~~~~~K~~~~~~~~~~~~~~~~vGDs~~Di~~a~~aG~~~~~--~~-~~~~~~~~~~~~~~~~~~~el--~~~l~ 216 (236)
T 2fea_A 142 GTCSNQCGCCKPSVIHELSEPNQYIIMIGDSVTDVEAAKLSDLCFAR--DY-LLNECREQNLNHLPYQDFYEI--RKEIE 216 (236)
T ss_dssp TTCCSCCSSCHHHHHHHHCCTTCEEEEEECCGGGHHHHHTCSEEEEC--HH-HHHHHHHTTCCEECCSSHHHH--HHHHH
T ss_pred cccccccCCcHHHHHHHHhccCCeEEEEeCChHHHHHHHhCCeeeec--hH-HHHHHHHCCCCeeecCCHHHH--HHHHH
Confidence 84 54 89999999999999999999999999999998863 33 234455554 89999999887 45554
Q ss_pred c
Q 001380 297 G 297 (1089)
Q Consensus 297 ~ 297 (1089)
.
T Consensus 217 ~ 217 (236)
T 2fea_A 217 N 217 (236)
T ss_dssp T
T ss_pred H
Confidence 3
|
| >3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-17 Score=202.47 Aligned_cols=104 Identities=23% Similarity=0.254 Sum_probs=91.5
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCC--ChHhHHHHHHHC--CCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCC
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSA--DRIKVDANLAAA--GLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTS 240 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~--~~~~~~~~l~~~--gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~ 240 (1089)
.++||+.++|+.|+++|++++|+||+ ........+... ++. .+||.++++++++..||+|++|+++++++|++|+
T Consensus 100 ~~~~~~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~~~~l~-~~fd~i~~~~~~~~~KP~p~~~~~~~~~lg~~p~ 178 (555)
T 3i28_A 100 KINRPMLQAALMLRKKGFTTAILTNTWLDDRAERDGLAQLMCELK-MHFDFLIESCQVGMVKPEPQIYKFLLDTLKASPS 178 (555)
T ss_dssp EECHHHHHHHHHHHHTTCEEEEEECCCCCCSTTHHHHHHHHHHHH-TTSSEEEEHHHHTCCTTCHHHHHHHHHHHTCCGG
T ss_pred CcChhHHHHHHHHHHCCCEEEEEeCCCccccchhhHHHHHhhhhh-hheeEEEeccccCCCCCCHHHHHHHHHHcCCChh
Confidence 78999999999999999999999998 222223333333 675 8899999999999999999999999999999999
Q ss_pred cEEEEcCChhhHHHHHHcCCeEEEEcCCC
Q 001380 241 ECIVIEDALAGVQAAKAAQMRCIAVTTTL 269 (1089)
Q Consensus 241 ~~v~VGD~~~Di~aA~~aG~~~i~V~~g~ 269 (1089)
+|+||||+.+|+++|+++||+++++.++.
T Consensus 179 ~~~~v~D~~~di~~a~~aG~~~~~~~~~~ 207 (555)
T 3i28_A 179 EVVFLDDIGANLKPARDLGMVTILVQDTD 207 (555)
T ss_dssp GEEEEESCHHHHHHHHHHTCEEEECSSHH
T ss_pred HEEEECCcHHHHHHHHHcCCEEEEECCCc
Confidence 99999999999999999999999998865
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-15 Score=166.87 Aligned_cols=206 Identities=12% Similarity=0.170 Sum_probs=161.0
Q ss_pred cCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC
Q 001380 656 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA 735 (1089)
Q Consensus 656 f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~ 735 (1089)
+..|.|++++++|+.||++|+.++.|++++++++ ++.+... ...|.+|+++++| .+|+++.
T Consensus 27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~-----------------~~~~~~l~~~~dg-~l~v~~~ 87 (296)
T 3e5z_A 27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHP-----------------SHHQNGHCLNKQG-HLIACSH 87 (296)
T ss_dssp CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESS-----------------CSSEEEEEECTTC-CEEEEET
T ss_pred CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECC-----------------CCCcceeeECCCC-cEEEEec
Confidence 4578999999999989999999999999999988 7766531 1368999999988 6999999
Q ss_pred CCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeC-----------------CCCeEE
Q 001380 736 GQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADS-----------------ESSSIR 798 (1089)
Q Consensus 736 ~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~-----------------~~~~I~ 798 (1089)
+.+.|+++|+.+|....+.... ....+..|++|+++++| ++|++|+ ..+.|+
T Consensus 88 ~~~~i~~~d~~~g~~~~~~~~~----------~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~ 156 (296)
T 3e5z_A 88 GLRRLERQREPGGEWESIADSF----------EGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVF 156 (296)
T ss_dssp TTTEEEEECSTTCCEEEEECEE----------TTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEE
T ss_pred CCCeEEEEcCCCCcEEEEeecc----------CCCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEE
Confidence 9899999999888877665311 01235578999999998 8999875 245899
Q ss_pred EEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCC-CCeE---EEEe
Q 001380 799 ALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPA-SNRV---STLA 874 (1089)
Q Consensus 799 ~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~-~~~v---~t~~ 874 (1089)
++++. +....+..+ +..|.+++++++|+++|+++.+++|.+++.+ ++.+ ..+.
T Consensus 157 ~~~~~-g~~~~~~~~----------------------~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~ 213 (296)
T 3e5z_A 157 RLAPD-GTLSAPIRD----------------------RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF 213 (296)
T ss_dssp EECTT-SCEEEEECC----------------------CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE
T ss_pred EECCC-CCEEEeecC----------------------CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe
Confidence 99877 555444321 4578999999999877999999999999875 4555 1221
Q ss_pred ccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCCCceEEEEe
Q 001380 875 GIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKEEPELQTLE 931 (1089)
Q Consensus 875 g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~~~~~~~l~ 931 (1089)
.. ....|.+|++|++|+|||++ ++.|.++++++. .+..+.
T Consensus 214 ~~-------------~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g~--~~~~~~ 253 (296)
T 3e5z_A 214 TV-------------EPGKTDGLRVDAGGLIWASA--GDGVHVLTPDGD--ELGRVL 253 (296)
T ss_dssp CC-------------SSSCCCSEEEBTTSCEEEEE--TTEEEEECTTSC--EEEEEE
T ss_pred eC-------------CCCCCCeEEECCCCCEEEEc--CCeEEEECCCCC--EEEEEE
Confidence 11 23569999999999999999 789999999875 455554
|
| >3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-17 Score=195.19 Aligned_cols=196 Identities=15% Similarity=0.112 Sum_probs=135.1
Q ss_pred CCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCH---HHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 001380 77 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGE---ANFLGGVASVKGVKGFDSEAAKKRFFEI 153 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (1089)
+++++|+||+||||++.+. +..+.+.+|+......+......+. ........... .. ...+....+
T Consensus 183 ~~~k~viFD~DgTLi~~~~-----~~~la~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l--~~-~~~~~~~~~--- 251 (415)
T 3p96_A 183 RAKRLIVFDVDSTLVQGEV-----IEMLAAKAGAEGQVAAITDAAMRGELDFAQSLQQRVATL--AG-LPATVIDEV--- 251 (415)
T ss_dssp TCCCEEEECTBTTTBSSCH-----HHHHHHHTTCHHHHHHHHHHHHTTCSCHHHHHHHHHHTT--TT-CBTHHHHHH---
T ss_pred cCCcEEEEcCcccCcCCch-----HHHHHHHcCCcHHHHHHHHHHhcCCcCHHHHHHHHHHHh--cC-CCHHHHHHH---
Confidence 5689999999999999873 4556666666543333333222222 22222222211 11 111222222
Q ss_pred HHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEE-------Ec---CCccCCCC
Q 001380 154 YLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIV-------SA---DAFENLKP 223 (1089)
Q Consensus 154 ~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~-------~~---~~~~~~KP 223 (1089)
.+. ..++||+.++|+.|+++|++++|+||+....++.+++++|+. .+|+..+ ++ +++..+||
T Consensus 252 -~~~------~~~~pg~~e~l~~Lk~~G~~~~ivS~~~~~~~~~~~~~lgl~-~~~~~~l~~~dg~~tg~~~~~v~~~kp 323 (415)
T 3p96_A 252 -AGQ------LELMPGARTTLRTLRRLGYACGVVSGGFRRIIEPLAEELMLD-YVAANELEIVDGTLTGRVVGPIIDRAG 323 (415)
T ss_dssp -HHH------CCBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCS-EEEEECEEEETTEEEEEECSSCCCHHH
T ss_pred -HHh------CccCccHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCcc-ceeeeeEEEeCCEEEeeEccCCCCCcc
Confidence 222 178999999999999999999999999999999999999996 7765432 22 24555899
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHh
Q 001380 224 APDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILT 296 (1089)
Q Consensus 224 ~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~ 296 (1089)
++++|+++++++|+++++|+||||+.+|+.+|+++|+.+++ + ..+.+.+ .+++++.+..--.+..+|.
T Consensus 324 k~~~~~~~~~~~gi~~~~~i~vGD~~~Di~~a~~aG~~va~-~---~~~~~~~-~ad~~i~~~~l~~ll~~l~ 391 (415)
T 3p96_A 324 KATALREFAQRAGVPMAQTVAVGDGANDIDMLAAAGLGIAF-N---AKPALRE-VADASLSHPYLDTVLFLLG 391 (415)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSSEEEEE-S---CCHHHHH-HCSEEECSSCTTHHHHHTT
T ss_pred hHHHHHHHHHHcCcChhhEEEEECCHHHHHHHHHCCCeEEE-C---CCHHHHH-hCCEEEccCCHHHHHHHhC
Confidence 99999999999999999999999999999999999987765 2 2333333 4788876543333344444
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.8e-15 Score=169.54 Aligned_cols=210 Identities=14% Similarity=0.173 Sum_probs=158.6
Q ss_pred CCCCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC-
Q 001380 600 LKFPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE- 677 (1089)
Q Consensus 600 l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~- 677 (1089)
+..|.++++++ +++|||++...++|.++|+. ++....+..+.. ...+..|.+|++ +++.|||++.+
T Consensus 83 ~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~---------~~~~~~p~~i~~--~~~~lyv~~~~~ 150 (328)
T 3dsm_A 83 FTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGYIECPDM---------DMESGSTEQMVQ--YGKYVYVNCWSY 150 (328)
T ss_dssp CSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTC---------CTTTCBCCCEEE--ETTEEEEEECTT
T ss_pred CCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCc---------cccCCCcceEEE--ECCEEEEEcCCC
Confidence 46799999987 67999999778999999987 455555554311 123568999999 35669999984
Q ss_pred CCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC----------cEEEEEECCC
Q 001380 678 NHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ----------HQIWEHSTVD 747 (1089)
Q Consensus 678 n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~----------~~I~~~~~~~ 747 (1089)
++.|.+||+.++.+......+ ..|.+++++++| .+|++..+. +.|+++|+.+
T Consensus 151 ~~~v~viD~~t~~~~~~i~~g-----------------~~p~~i~~~~dG-~l~v~~~~~~~~~~~~~~~~~v~~id~~t 212 (328)
T 3dsm_A 151 QNRILKIDTETDKVVDELTIG-----------------IQPTSLVMDKYN-KMWTITDGGYEGSPYGYEAPSLYRIDAET 212 (328)
T ss_dssp CCEEEEEETTTTEEEEEEECS-----------------SCBCCCEECTTS-EEEEEBCCBCTTCSSCBCCCEEEEEETTT
T ss_pred CCEEEEEECCCCeEEEEEEcC-----------------CCccceEEcCCC-CEEEEECCCccCCccccCCceEEEEECCC
Confidence 889999999988765544322 268999999987 799998876 8999999998
Q ss_pred CeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCC
Q 001380 748 GVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDR 827 (1089)
Q Consensus 748 g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~ 827 (1089)
+.+....... . -..|++|+++++++.||+++. .|.+++++++.+... .....+
T Consensus 213 ~~v~~~~~~~------------~-g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~~~---------~~~~~~-- 265 (328)
T 3dsm_A 213 FTVEKQFKFK------------L-GDWPSEVQLNGTRDTLYWINN---DIWRMPVEADRVPVR---------PFLEFR-- 265 (328)
T ss_dssp TEEEEEEECC------------T-TCCCEEEEECTTSCEEEEESS---SEEEEETTCSSCCSS---------CSBCCC--
T ss_pred CeEEEEEecC------------C-CCCceeEEEecCCCEEEEEcc---EEEEEECCCCceeee---------eeecCC--
Confidence 8765332110 0 136999999999999999986 899999886554100 000000
Q ss_pred CCccccccccCceEEEEcc-CCcEEEEe----CCCCEEEEEeCCCCeEEEEe
Q 001380 828 DGMGSEVLLQHPLGVYCAK-NGQIYVAD----SYNHKIKKLDPASNRVSTLA 874 (1089)
Q Consensus 828 dg~~~~~~l~~P~gva~~~-~G~lyVaD----~~n~~I~~~d~~~~~v~t~~ 874 (1089)
...|.|+++|+ +|++||++ ..+++|.+||+++..+.++.
T Consensus 266 --------~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~ 309 (328)
T 3dsm_A 266 --------DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFY 309 (328)
T ss_dssp --------SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEEE
T ss_pred --------CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEEE
Confidence 35799999998 78999999 88999999999977777764
|
| >2o2x_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP: c.108.1.19 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-17 Score=177.48 Aligned_cols=128 Identities=22% Similarity=0.256 Sum_probs=109.6
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCCh---------------HhHHHHHHHCCCCCCCccEEE-Ec-----------CC
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADR---------------IKVDANLAAAGLPVSMFDAIV-SA-----------DA 217 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~---------------~~~~~~l~~~gl~~~~fd~i~-~~-----------~~ 217 (1089)
.++||+.++|+.|+++|++++|+||+.. ..++..++++|+. |+.++ +. ++
T Consensus 56 ~~~~g~~e~L~~L~~~G~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~---~~~~~~~~~~~~g~~~~~~~~ 132 (218)
T 2o2x_A 56 VLRPQMLPAIATANRAGIPVVVVTNQSGIARGYFGWSAFAAVNGRVLELLREEGVF---VDMVLACAYHEAGVGPLAIPD 132 (218)
T ss_dssp CBCGGGHHHHHHHHHHTCCEEEEEECHHHHTTSCCHHHHHHHHHHHHHHHHHTTCC---CSEEEEECCCTTCCSTTCCSS
T ss_pred eECcCHHHHHHHHHHCCCEEEEEcCcCCCCcccccHHHHHHHHHHHHHHHHHcCCc---eeeEEEeecCCCCceeecccC
Confidence 6899999999999999999999999987 7889999999984 66644 43 56
Q ss_pred ccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeE-EEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHh
Q 001380 218 FENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRC-IAVTTTLSEERLKEASPSLIRKEIGSVSLNDILT 296 (1089)
Q Consensus 218 ~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~-i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~ 296 (1089)
...+||++.+|+.+++++|++|++|+||||+.+|+++|+++|+++ ++|.+|....+.....|++++.++.++ .+++.
T Consensus 133 ~~~~KP~~~~~~~~~~~~~i~~~~~~~VGD~~~Di~~a~~aG~~~~i~v~~g~~~~~~~~~~~~~~i~~l~el--~~~l~ 210 (218)
T 2o2x_A 133 HPMRKPNPGMLVEAGKRLALDLQRSLIVGDKLADMQAGKRAGLAQGWLVDGEAAVQPGFAIRPLRDSSELGDL--LAAIE 210 (218)
T ss_dssp CTTSTTSCHHHHHHHHHHTCCGGGCEEEESSHHHHHHHHHTTCSEEEEETCCCEEETTEEEEEESSHHHHHHH--HHHHH
T ss_pred CccCCCCHHHHHHHHHHcCCCHHHEEEEeCCHHHHHHHHHCCCCEeEEEecCCCCcccccCCCCEecccHHHH--HHHHH
Confidence 778999999999999999999999999999999999999999999 999998743333445788888888887 45554
Q ss_pred c
Q 001380 297 G 297 (1089)
Q Consensus 297 ~ 297 (1089)
.
T Consensus 211 ~ 211 (218)
T 2o2x_A 211 T 211 (218)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-18 Score=170.80 Aligned_cols=117 Identities=17% Similarity=0.260 Sum_probs=101.8
Q ss_pred CCCCCccccCCCCCceeecccc-cCCC-EEEEEEecCCCcchhhhhhhHHHHHHHcCC--CCEEEEEEeCCCCCChhcHH
Q 001380 429 IVPEFPAKLDWLNTAPLQFRRD-LKGK-VVVLDFWTYCCINCMHVLPDLEFLEKKYKD--MPFTVVGVHSAKFDNEKDLE 504 (1089)
Q Consensus 429 ~~P~f~~~~~~~~g~~~~l~~~-~~gk-~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~--~~v~vi~v~~~~~~~~~~~~ 504 (1089)
.+|+|++ .+++|+.+++ ++ ++|| ++||+||++||++|+.++|.|++++++|++ .++.+++|++ +++.+
T Consensus 3 ~~p~~~l--~~~~g~~~~l-~~~~~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~-----d~~~~ 74 (143)
T 2lus_A 3 FIQGIKL--VKKNRCEVNA-NEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSS-----DRSED 74 (143)
Confidence 5789985 4569999999 78 9999 999999999999999999999999999953 4799999965 45678
Q ss_pred HHHHHHHHcCCccce---eecCChhHHHHhCCCceeEEEEECCCCcEEEEec
Q 001380 505 AIRNAVLRYGISHPV---VNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLA 553 (1089)
Q Consensus 505 ~~~~~~~~~~~~~~v---~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~ 553 (1089)
.+++++++++++|+. ..|...++++.|+|.++|++++||++|+++.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 126 (143)
T 2lus_A 75 DMFQYMMESHGDWLAIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMNG 126 (143)
Confidence 899999999999754 4556678999999999999999999999998843
|
| >3kd3_A Phosphoserine phosphohydrolase-like protein; csgid, niaid, S genomics, national institute of allergy and infectious DISE (niaid); 1.70A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.9e-18 Score=177.66 Aligned_cols=124 Identities=19% Similarity=0.191 Sum_probs=98.7
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCC-CCccE--EEEcCC----ccCCCCCHHHHHHHH-HHcC
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPV-SMFDA--IVSADA----FENLKPAPDIFLSAS-KILN 236 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~-~~fd~--i~~~~~----~~~~KP~~~~~~~~l-~~lg 236 (1089)
.++||+.++++.|+++|++++|+||+....++..++.+|+.. .+|.. +++.+. ....||++..+..++ +.+|
T Consensus 82 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (219)
T 3kd3_A 82 LLTDGIKELVQDLKNKGFEIWIFSGGLSESIQPFADYLNIPRENIFAVETIWNSDGSFKELDNSNGACDSKLSAFDKAKG 161 (219)
T ss_dssp TBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCCGGGEEEEEEEECTTSBEEEEECTTSTTTCHHHHHHHHGG
T ss_pred cCChhHHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHcCCCcccEEEeeeeecCCCceeccCCCCCCcccHHHHHHHHhC
Confidence 588999999999999999999999999999999999999951 34542 222332 245788776665555 5569
Q ss_pred CCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC-CHHHHhhcCCcEEecCcccC
Q 001380 237 VPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL-SEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 237 v~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~-~~~~l~~~~~d~vi~dl~el 289 (1089)
+++++|+||||+.+|+.++ ++|+.+++|..+. ...+.....|++++.++.++
T Consensus 162 ~~~~~~~~vGD~~~Di~~~-~~G~~~~~v~~~~~~~~~~~~~~ad~v~~~~~el 214 (219)
T 3kd3_A 162 LIDGEVIAIGDGYTDYQLY-EKGYATKFIAYMEHIEREKVINLSKYVARNVAEL 214 (219)
T ss_dssp GCCSEEEEEESSHHHHHHH-HHTSCSEEEEECSSCCCHHHHHHCSEEESSHHHH
T ss_pred CCCCCEEEEECCHhHHHHH-hCCCCcEEEeccCccccHHHHhhcceeeCCHHHH
Confidence 9999999999999999998 6899988887765 34444455799999999887
|
| >4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=178.61 Aligned_cols=130 Identities=15% Similarity=0.140 Sum_probs=110.2
Q ss_pred CCCCCCccccCCCCCceeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHH
Q 001380 428 PIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAI 506 (1089)
Q Consensus 428 ~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~ 506 (1089)
.++|+|++. +.+|++++| ++++||+|||+|| +.||+.|..|++.|++ ...+++.|||||. |+.+..
T Consensus 2 ak~p~F~l~--~~~G~~~~L-sd~~Gk~vvl~F~p~~~tp~C~~e~~~~~~----~~~~~~~v~gis~------D~~~~~ 68 (322)
T 4eo3_A 2 ARVKHFELL--TDEGKTFTH-VDLYGKYTILFFFPKAGTSGSTREAVEFSR----ENFEKAQVVGISR------DSVEAL 68 (322)
T ss_dssp CBCCCCEEE--ETTSCEEEG-GGTTTSEEEEEECSSTTSHHHHHHHHHHHH----SCCTTEEEEEEES------CCHHHH
T ss_pred CCCCCcEEE--CCCcCEEeH-HHhCCCeEEEEEECCCCCCCCHHHHHHHHH----HhhCCCEEEEEeC------CCHHHH
Confidence 468999965 569999999 9999999999999 6899999999988864 2335799999985 578888
Q ss_pred HHHHHHcCCccceeecCChhHHHHhCCC----ceeEEEEECCCCcEEEEecCC---CchhhHHHHHHHHHH
Q 001380 507 RNAVLRYGISHPVVNDGDMNLWRELGVN----SWPTFAVVGPNGKLLAQLAGE---GHRKDLDDLVEAALL 570 (1089)
Q Consensus 507 ~~~~~~~~~~~~v~~d~~~~l~~~~~v~----~~Pt~~lid~~G~i~~~~~G~---~~~~~l~~~l~~~l~ 570 (1089)
++|+++++++||++.|+++++++.|||. .+|++||||++|+|++.+.+. .|.+++.+.++++..
T Consensus 69 ~~f~~~~~l~fp~l~D~~~~v~~~ygv~~~~~~~r~tfiId~~G~i~~~~~~v~~~~h~~~~l~~~~~~~~ 139 (322)
T 4eo3_A 69 KRFKEKNDLKVTLLSDPEGILHEFFNVLENGKTVRSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRLIE 139 (322)
T ss_dssp HHHHHHHTCCSEEEECTTCHHHHHTTCEETTEECCEEEEECTTSBEEEEEESCCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCceEEEEcCchHHHHhcCCCCCCcCccEEEEECCCCEEEEEEeCCCccccHHHHHHHHhhhch
Confidence 9999999999999999999999999994 589999999999999887664 356666666666643
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.6e-15 Score=164.86 Aligned_cols=238 Identities=14% Similarity=0.173 Sum_probs=177.0
Q ss_pred EEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEE
Q 001380 607 AIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREID 685 (1089)
Q Consensus 607 avd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d 685 (1089)
.++..++++|+++...++|.++|.+ |+.+..+..+ ...| +++++++|+.+|+++..++.|+++|
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~--------------~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d 68 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLG--------------YDFV-DTAITSDCSNVVVTSDFCQTLVQIE 68 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECC--------------CCEE-EEEECSSSCEEEEEESTTCEEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEcc--------------CCcc-eEEEcCCCCEEEEEeCCCCeEEEEE
Confidence 3445578999999999999999987 7776665533 1246 9999999999999999899999999
Q ss_pred CCCCeE-EEEecCCCCCCCCCCCCcccccccCCcee-EEEecCCCEEEEEECCCc--EEEEEECCCCeEEEEeCCCcccc
Q 001380 686 FVNDTV-RTLAGNGTKGSDYQGGEKGTSQLLNSPWD-VCYKPINEKVYIAMAGQH--QIWEHSTVDGVTRAFSGDGYERN 761 (1089)
Q Consensus 686 ~~~g~v-~~~ag~g~~~~~~~~~~~~~~~~l~~P~~-la~~~~g~~lyvad~~~~--~I~~~~~~~g~~~~~~g~g~~~~ 761 (1089)
+.++.+ ......+ ..|.. ++++|+|+.+|++...++ .|+.||..++.+......
T Consensus 69 ~~~~~~~~~~~~~~-----------------~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~----- 126 (331)
T 3u4y_A 69 TQLEPPKVVAIQEG-----------------QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI----- 126 (331)
T ss_dssp CSSSSCEEEEEEEC-----------------SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-----
T ss_pred CCCCceeEEecccC-----------------CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-----
Confidence 988774 3222211 25777 999999999995554445 999999988876544321
Q ss_pred CCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCe-EEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCce
Q 001380 762 LNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSS-IRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPL 840 (1089)
Q Consensus 762 ~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~-I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~ 840 (1089)
-..|.+++++|+|+.||+++...+. |..++.+.++...-.... .. ..-..|.
T Consensus 127 ----------~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~------~~-----------~~~~~~~ 179 (331)
T 3u4y_A 127 ----------PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQE------FI-----------SGGTRPF 179 (331)
T ss_dssp ----------CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEE------EE-----------CSSSSEE
T ss_pred ----------CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCc------cc-----------cCCCCcc
Confidence 1257899999999889999998788 888877643321110000 00 0013589
Q ss_pred EEEEccCCc-EEEEeCCCCEEEEEeCCCCe----EEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEEEECCCCE
Q 001380 841 GVYCAKNGQ-IYVADSYNHKIKKLDPASNR----VSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADTNNNI 914 (1089)
Q Consensus 841 gva~~~~G~-lyVaD~~n~~I~~~d~~~~~----v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~~n~~ 914 (1089)
+++++++|+ +|+++..+++|.++|..++. +.++.. -..|.+++++++|+ ||+++..++.
T Consensus 180 ~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~---------------~~~~~~~~~spdg~~l~v~~~~~~~ 244 (331)
T 3u4y_A 180 NITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT---------------NNLPGTIVVSRDGSTVYVLTESTVD 244 (331)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC---------------SSCCCCEEECTTSSEEEEECSSEEE
T ss_pred ceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC---------------CCCCceEEECCCCCEEEEEEcCCCE
Confidence 999999996 99999999999999997666 444432 14589999999997 9999988899
Q ss_pred EEEEeCCCC
Q 001380 915 IRYLDLNKE 923 (1089)
Q Consensus 915 I~~~~~~~~ 923 (1089)
|.++++.+.
T Consensus 245 i~~~d~~~~ 253 (331)
T 3u4y_A 245 VFNFNQLSG 253 (331)
T ss_dssp EEEEETTTT
T ss_pred EEEEECCCC
Confidence 999999876
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-14 Score=161.85 Aligned_cols=235 Identities=14% Similarity=0.155 Sum_probs=174.4
Q ss_pred CCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC
Q 001380 598 SPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE 677 (1089)
Q Consensus 598 ~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~ 677 (1089)
..+..+.++++++.++.||++|...++|.+++.++.....+... ..|.+++++++|+ +|++.
T Consensus 46 ~~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~---------------~~v~~i~~~~dg~-l~v~~-- 107 (326)
T 2ghs_A 46 TPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALP---------------FMGSALAKISDSK-QLIAS-- 107 (326)
T ss_dssp SCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECS---------------SCEEEEEEEETTE-EEEEE--
T ss_pred cCCCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECC---------------CcceEEEEeCCCe-EEEEE--
Confidence 34567889999987799999999999999999987665554322 2578999999988 78887
Q ss_pred CCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC------CcEEEEEECCCCeEE
Q 001380 678 NHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG------QHQIWEHSTVDGVTR 751 (1089)
Q Consensus 678 n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~------~~~I~~~~~~~g~~~ 751 (1089)
.+.|+++|++++.++.+..... + ...+.+++++++++| .+|+++.+ .+.|++++ ++.+.
T Consensus 108 ~~gl~~~d~~~g~~~~~~~~~~-~-----------~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~--~g~~~ 172 (326)
T 2ghs_A 108 DDGLFLRDTATGVLTLHAELES-D-----------LPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVA--KGKVT 172 (326)
T ss_dssp TTEEEEEETTTCCEEEEECSST-T-----------CTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEE--TTEEE
T ss_pred CCCEEEEECCCCcEEEEeeCCC-C-----------CCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEe--CCcEE
Confidence 4569999999888887753211 0 113468999999988 68988753 47899999 56665
Q ss_pred EEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcC--CC-Ce---EEEecCCCCCCCCccccC
Q 001380 752 AFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLK--TG-GS---RLLAGGDPIFPDNLFKFG 825 (1089)
Q Consensus 752 ~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~--~~-~~---~~~~g~~~~~~~~l~~~g 825 (1089)
.+.. .+..|++++++++|+.||++++.++.|.+++.+ ++ .. +.+. .+.
T Consensus 173 ~~~~---------------~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~-----------~~~ 226 (326)
T 2ghs_A 173 KLFA---------------DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI-----------DST 226 (326)
T ss_dssp EEEE---------------EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE-----------ECT
T ss_pred EeeC---------------CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEE-----------ECC
Confidence 5531 233588999999998999999999999999975 33 21 1111 111
Q ss_pred CCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEc-cCC-
Q 001380 826 DRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEA-QNG- 903 (1089)
Q Consensus 826 ~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd-~~G- 903 (1089)
. ....|.++++|++|++||++..+++|.++|+++..+.++... ...|.+++++ +++
T Consensus 227 ~--------~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~~~~i~~~--------------~~~~~~~af~g~d~~ 284 (326)
T 2ghs_A 227 G--------IKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVP--------------GKQTTCPAFIGPDAS 284 (326)
T ss_dssp T--------SSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECS--------------CSBEEEEEEESTTSC
T ss_pred C--------CCCCCCeeEECCCCCEEEEEeCCCEEEEECCCCCEEEEEECC--------------CCCcEEEEEecCCCC
Confidence 0 013589999999999999998889999999976666666421 2348899997 665
Q ss_pred cEEEEECCCC
Q 001380 904 NLFIADTNNN 913 (1089)
Q Consensus 904 ~lyVad~~n~ 913 (1089)
.|||+....+
T Consensus 285 ~L~vt~~~~~ 294 (326)
T 2ghs_A 285 RLLVTSAREH 294 (326)
T ss_dssp EEEEEEBCTT
T ss_pred EEEEEecCCC
Confidence 5999876654
|
| >2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-17 Score=170.46 Aligned_cols=107 Identities=17% Similarity=0.168 Sum_probs=96.8
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCC-hHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcE
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSAD-RIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSEC 242 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~-~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~ 242 (1089)
..++||+.++|+.|+++|++++|+||+. ...++..++.+|+. .+|+.++... +|+++.|..+++++|++|++|
T Consensus 67 ~~~~~g~~e~L~~L~~~G~~v~ivT~~~~~~~~~~~l~~~gl~-~~f~~~~~~~-----~~k~~~~~~~~~~~~~~~~~~ 140 (187)
T 2wm8_A 67 VRLYPEVPEVLKRLQSLGVPGAAASRTSEIEGANQLLELFDLF-RYFVHREIYP-----GSKITHFERLQQKTGIPFSQM 140 (187)
T ss_dssp ECCCTTHHHHHHHHHHHTCCEEEEECCSCHHHHHHHHHHTTCT-TTEEEEEESS-----SCHHHHHHHHHHHHCCCGGGE
T ss_pred cCcchhHHHHHHHHHHCCceEEEEeCCCChHHHHHHHHHcCcH-hhcceeEEEe-----CchHHHHHHHHHHcCCChHHE
Confidence 3689999999999999999999999998 69999999999997 9999886543 578899999999999999999
Q ss_pred EEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhh
Q 001380 243 IVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKE 276 (1089)
Q Consensus 243 v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~ 276 (1089)
+||||+.+|+.+|+++|+.+++|.+|...+.+..
T Consensus 141 ~~igD~~~Di~~a~~aG~~~i~v~~g~~~~~~~~ 174 (187)
T 2wm8_A 141 IFFDDERRNIVDVSKLGVTCIHIQNGMNLQTLSQ 174 (187)
T ss_dssp EEEESCHHHHHHHHTTTCEEEECSSSCCHHHHHH
T ss_pred EEEeCCccChHHHHHcCCEEEEECCCCChHHHHH
Confidence 9999999999999999999999999876655543
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-14 Score=161.92 Aligned_cols=253 Identities=13% Similarity=0.166 Sum_probs=182.2
Q ss_pred CCCCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCE-EEEEecCCCCCCCCCCCCccccCCcce-eEEeeCCCEEEEEEC
Q 001380 600 LKFPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNF-IVQIGSSGEEGLRDGSFDDATFNRPQG-LAYNAKKNLLYVADT 676 (1089)
Q Consensus 600 l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~-~~~i~~~g~~g~~dG~~~~~~f~~P~g-la~d~~g~~lyVaD~ 676 (1089)
...| ++++++.+..||+++.+.++|.++|.+ ++. ...+... ..|.. ++++|+|+.+|+++.
T Consensus 40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~---------------~~~~~~~~~s~dg~~l~~~~~ 103 (331)
T 3u4y_A 40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG---------------QSSMADVDITPDDQFAVTVTG 103 (331)
T ss_dssp CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC---------------SSCCCCEEECTTSSEEEECCC
T ss_pred CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC---------------CCCccceEECCCCCEEEEecC
Confidence 3456 899998666799999988999999986 554 4444332 25677 999999998896554
Q ss_pred CCC--EEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcE-EEEEECCC-CeEEE
Q 001380 677 ENH--ALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQ-IWEHSTVD-GVTRA 752 (1089)
Q Consensus 677 ~n~--~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~-I~~~~~~~-g~~~~ 752 (1089)
.++ .|+.+|..++.+......+ ..|.+++++|+|+.+|+++...+. |+.|+... +.+..
T Consensus 104 ~~~~~~i~v~d~~~~~~~~~~~~~-----------------~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~ 166 (331)
T 3u4y_A 104 LNHPFNMQSYSFLKNKFISTIPIP-----------------YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFD 166 (331)
T ss_dssp SSSSCEEEEEETTTTEEEEEEECC-----------------TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEE
T ss_pred CCCcccEEEEECCCCCeEEEEECC-----------------CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEee
Confidence 445 9999999888765544322 267999999999889999988777 77666543 22221
Q ss_pred EeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCe----EEEecCCCCCCCCccccCCCC
Q 001380 753 FSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGS----RLLAGGDPIFPDNLFKFGDRD 828 (1089)
Q Consensus 753 ~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~----~~~~g~~~~~~~~l~~~g~~d 828 (1089)
... ... ..-..|.+++++++|+.+|+++...+.|+.++..++.. ..+..
T Consensus 167 ~~~--~~~---------~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~---------------- 219 (331)
T 3u4y_A 167 TGQ--EFI---------SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT---------------- 219 (331)
T ss_dssp EEE--EEE---------CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC----------------
T ss_pred cCC--ccc---------cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC----------------
Confidence 110 000 11135899999999988999999999999999986654 22211
Q ss_pred CccccccccCceEEEEccCCc-EEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EE
Q 001380 829 GMGSEVLLQHPLGVYCAKNGQ-IYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LF 906 (1089)
Q Consensus 829 g~~~~~~l~~P~gva~~~~G~-lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-ly 906 (1089)
-..|.+++++++|+ +|++....+.|.++|..++.+..+......-..++ .......+++++++|+ ||
T Consensus 220 -------~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~spdg~~l~ 288 (331)
T 3u4y_A 220 -------NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDP----RPLFGANQMALNKTETKLF 288 (331)
T ss_dssp -------SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCC----GGGTTCCCEEECTTSSEEE
T ss_pred -------CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCC----CCcccccceEECCCCCEEE
Confidence 13588899999997 99999888999999999888755542211000000 1222236789999986 89
Q ss_pred EEECCCCEEEEEeCCCC
Q 001380 907 IADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 907 Vad~~n~~I~~~~~~~~ 923 (1089)
++...++.|.++++.+.
T Consensus 289 v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 289 ISANISRELKVFTISGK 305 (331)
T ss_dssp EEETTTTEEEEEETTSC
T ss_pred EecCCCCcEEEEEecCC
Confidence 99999999999999886
|
| >1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle, B-hairpin, structural genomics, BSGC structure funded by NIH; 1.48A {Methanocaldococcus jannaschii} SCOP: c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-16 Score=167.58 Aligned_cols=190 Identities=22% Similarity=0.264 Sum_probs=125.5
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASV-KGVKGFDSEAAKKRFFEIYLD 156 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 156 (1089)
++|+|+||+||||+|+.. +..+++.+|.+.....+......+...+...+... ......... .+.+.+
T Consensus 4 ~~k~i~fDlDGTL~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-- 72 (211)
T 1l7m_A 4 KKKLILFDFDSTLVNNET-----IDEIAREAGVEEEVKKITKEAMEGKLNFEQSLRKRVSLLKDLPIE----KVEKAI-- 72 (211)
T ss_dssp CCEEEEEECCCCCBSSCH-----HHHHHHHTTCHHHHHHHHHHHHTTSSCHHHHHHHHHHTTTTCBHH----HHHHHH--
T ss_pred CCcEEEEeCCCCCCCccH-----HHHHHHHhCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcCCCHH----HHHHHH--
Confidence 579999999999999863 34556666664322222211111101111111110 111111111 111111
Q ss_pred HhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCC----------ccCCCCCHH
Q 001380 157 KYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADA----------FENLKPAPD 226 (1089)
Q Consensus 157 ~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~----------~~~~KP~~~ 226 (1089)
.. ..+.|++.++|+.|+++|++++|+|++....++..++.+++. .+|+.++...+ ....++++.
T Consensus 73 --~~---~~l~~~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~ 146 (211)
T 1l7m_A 73 --KR---ITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLD-YAFANRLIVKDGKLTGDVEGEVLKENAKGE 146 (211)
T ss_dssp --HT---CCBCTTHHHHHHHHHHTTEEEEEEEEEEHHHHHHHHHHHTCS-EEEEEEEEEETTEEEEEEECSSCSTTHHHH
T ss_pred --Hh---CCCCccHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCC-eEEEeeeEEECCEEcCCcccCccCCccHHH
Confidence 11 257899999999999999999999998888888889999986 66655432211 123467789
Q ss_pred HHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecC--cccC
Q 001380 227 IFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKE--IGSV 289 (1089)
Q Consensus 227 ~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~d--l~el 289 (1089)
.+..+++++|+++++|++|||+.+|+.+|+.+|+. +++. ..+.+ ...+++++.+ +.++
T Consensus 147 ~l~~~~~~lgi~~~~~~~iGD~~~Di~~~~~ag~~-~~~~---~~~~~-~~~a~~v~~~~~~~~l 206 (211)
T 1l7m_A 147 ILEKIAKIEGINLEDTVAVGDGANDISMFKKAGLK-IAFC---AKPIL-KEKADICIEKRDLREI 206 (211)
T ss_dssp HHHHHHHHHTCCGGGEEEEECSGGGHHHHHHCSEE-EEES---CCHHH-HTTCSEEECSSCGGGG
T ss_pred HHHHHHHHcCCCHHHEEEEecChhHHHHHHHCCCE-EEEC---CCHHH-HhhcceeecchhHHHH
Confidence 99999999999999999999999999999999986 3443 23344 3479999988 7776
|
| >1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-17 Score=188.83 Aligned_cols=202 Identities=15% Similarity=0.119 Sum_probs=148.6
Q ss_pred cCCcccCCchHHHHHHHHHHHH-cCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHH------HHHHHh
Q 001380 86 MDGVLCNSEEPSRRAAVDVFAE-MGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFE------IYLDKY 158 (1089)
Q Consensus 86 ~DGTL~d~~~~~~~a~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 158 (1089)
+|||+. ....+..++.+..++ +++. .+.+....|.........+...++. .....++.. .....+
T Consensus 137 fD~t~~-~~d~i~~~l~~~a~~~~~i~--~~~~~~~~G~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 208 (384)
T 1qyi_A 137 LDNVKV-GKNNIYAALEEFATTELHVS--DATLFSLKGALWTLAQEVYQEWYLG-----SKLYEDVEKKIARTTFKTGYI 208 (384)
T ss_dssp HTTCCS-SHHHHHHHHHHHHHHHTTCS--CCGGGSTTCHHHHHHHHHHHHHHHH-----HHHHHHHHCSCCSCSSCCCTT
T ss_pred hcCCCc-cHHHHHHHHHHHHHHhCCCC--HHHHHHhcCCCHHHHHHHHHHHcCC-----ccCHHHHHhHHHHHHHHHHHH
Confidence 466665 344566777777664 4654 3445556666555555555443221 000111100 000001
Q ss_pred cCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCcc--EEEEcCCcc-----------CCCCCH
Q 001380 159 AKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFD--AIVSADAFE-----------NLKPAP 225 (1089)
Q Consensus 159 ~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd--~i~~~~~~~-----------~~KP~~ 225 (1089)
.......++||+.++|+.|+++|++++|+||+.+..++..++++|+. .+|+ .+++++++. .+||+|
T Consensus 209 ~~~~~~~l~pGv~elL~~Lk~~Gi~laIvTn~~~~~~~~~L~~lgL~-~~Fd~~~Ivs~ddv~~~~~~~~~~kp~~KP~P 287 (384)
T 1qyi_A 209 YQEIILRPVDEVKVLLNDLKGAGFELGIATGRPYTETVVPFENLGLL-PYFEADFIATASDVLEAENMYPQARPLGKPNP 287 (384)
T ss_dssp TTCCBSSCHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCG-GGSCGGGEECHHHHHHHHHHSTTSCCCCTTST
T ss_pred hhccCCCcCcCHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcCCh-HhcCCCEEEecccccccccccccccCCCCCCH
Confidence 11123478999999999999999999999999999999999999996 9999 899988765 389999
Q ss_pred HHHHHHHHHcC--------------CCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCC----HHHHhhcCCcEEecCcc
Q 001380 226 DIFLSASKILN--------------VPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLS----EERLKEASPSLIRKEIG 287 (1089)
Q Consensus 226 ~~~~~~l~~lg--------------v~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~----~~~l~~~~~d~vi~dl~ 287 (1089)
++|..+++++| ++|++|+||||+.+|+.+|+++||.+|+|.+|.. .+++...+|+++++++.
T Consensus 288 ~~~~~a~~~lg~~~~~~~~~~~~~~v~p~e~l~VGDs~~Di~aAk~AG~~~I~V~~g~~~~~~~~~l~~~~ad~vi~sl~ 367 (384)
T 1qyi_A 288 FSYIAALYGNNRDKYESYINKQDNIVNKDDVFIVGDSLADLLSAQKIGATFIGTLTGLKGKDAAGELEAHHADYVINHLG 367 (384)
T ss_dssp HHHHHHHHCCCGGGHHHHHHCCTTCSCTTTEEEEESSHHHHHHHHHHTCEEEEESCBTTBGGGHHHHHHTTCSEEESSGG
T ss_pred HHHHHHHHHcCCccccccccccccCCCCcCeEEEcCCHHHHHHHHHcCCEEEEECCCccccccHHHHhhcCCCEEECCHH
Confidence 99999999999 8999999999999999999999999999999863 45666678999999999
Q ss_pred cCCHHHHHhcc
Q 001380 288 SVSLNDILTGG 298 (1089)
Q Consensus 288 el~i~~ll~~~ 298 (1089)
++ ..+|...
T Consensus 368 eL--~~~l~~~ 376 (384)
T 1qyi_A 368 EL--RGVLDNL 376 (384)
T ss_dssp GH--HHHHSCT
T ss_pred HH--HHHHHHH
Confidence 98 6666544
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-14 Score=161.26 Aligned_cols=209 Identities=12% Similarity=0.134 Sum_probs=157.7
Q ss_pred cCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC
Q 001380 656 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA 735 (1089)
Q Consensus 656 f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~ 735 (1089)
+..+.|.+++++++.||++|..+++|+++|++++.+..+... ..|.+++++++|+ +|++.
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~------------------~~~~~i~~~~dG~-l~v~~- 71 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMD------------------APVSSVALRQSGG-YVATI- 71 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECS------------------SCEEEEEEBTTSS-EEEEE-
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCC------------------CceEEEEECCCCC-EEEEE-
Confidence 446799999997777999999999999999998887665421 2688999999985 88887
Q ss_pred CCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeC-----------CCCeEEEEEcCC
Q 001380 736 GQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADS-----------ESSSIRALNLKT 804 (1089)
Q Consensus 736 ~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~-----------~~~~I~~~~~~~ 804 (1089)
.+.|+++|+.++.++.+..... ...+..|++++++++| ++|+++. ..+.|++++++
T Consensus 72 -~~~l~~~d~~~g~~~~~~~~~~----------~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~~~~~l~~~d~~- 138 (297)
T 3g4e_A 72 -GTKFCALNWKEQSAVVLATVDN----------DKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVLERHQGALYSLFPD- 138 (297)
T ss_dssp -TTEEEEEETTTTEEEEEEECCT----------TCSSEEEEEEEECTTS-CEEEEEEECCSBTTBCCTTCEEEEEECTT-
T ss_pred -CCeEEEEECCCCcEEEEEecCC----------CCCCCCCCCEEECCCC-CEEEecCCcccccccccCCCcEEEEEECC-
Confidence 4789999999998877753210 1224568999999998 7999874 34578888876
Q ss_pred CCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEEEeCCCCEEEEEeC--CCCeEE---EEeccCC
Q 001380 805 GGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADSYNHKIKKLDP--ASNRVS---TLAGIGK 878 (1089)
Q Consensus 805 ~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~~n~~I~~~d~--~~~~v~---t~~g~g~ 878 (1089)
+....+.. .+..|.|++++++|+ +||+|+.+++|.+++. .++.+. .+.....
T Consensus 139 g~~~~~~~----------------------~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~ 196 (297)
T 3g4e_A 139 HHVKKYFD----------------------QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEK 196 (297)
T ss_dssp SCEEEEEE----------------------EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCG
T ss_pred CCEEEEee----------------------ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCC
Confidence 33333322 145799999999995 9999999999999974 566553 2221110
Q ss_pred CCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCCCceEEEEe
Q 001380 879 AGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKEEPELQTLE 931 (1089)
Q Consensus 879 ~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~~~~~~~l~ 931 (1089)
....|.||++|++|+|||++..+++|.++++++. ..+.++.
T Consensus 197 -----------~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG-~~~~~i~ 237 (297)
T 3g4e_A 197 -----------EEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG-KRLQTVK 237 (297)
T ss_dssp -----------GGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC-CEEEEEE
T ss_pred -----------CCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc-eEEEEEE
Confidence 1245999999999999999999999999999843 1445554
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.1e-15 Score=168.50 Aligned_cols=275 Identities=17% Similarity=0.137 Sum_probs=177.1
Q ss_pred ceeEEEEECCCCcEEEEecCCC-chhhHHHHHHHHHHHhcccccccCCCCCcccccCCCCCCCCCCCCCCceEEEeecCC
Q 001380 535 SWPTFAVVGPNGKLLAQLAGEG-HRKDLDDLVEAALLFYGKKKLLDNTPLPLSLEKDNDPRLFTSPLKFPGKLAIDILNN 613 (1089)
Q Consensus 535 ~~Pt~~lid~~G~i~~~~~G~~-~~~~l~~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~P~~vavd~~~g 613 (1089)
.+|+-+.++++|++........ ....+ .... .|.+... |- ... .....+..|.+|++|+ +|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l--------~~~~-~g~~~~~--p~-~~~-----~~~~~~~~p~gv~~d~-~g 78 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQV--------AELT-QDGLIPF--PP-QSG-----NAIITFDTVLGIKSDG-NG 78 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSE--------EEEE-TTEEEES--CC-CCS-----SCCCCCSCEEEEEECS-SS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEE--------EEEC-CCCeecC--CC-ccc-----CcccceeEeeEEEEcC-CC
Confidence 6899999999999865532110 00000 0111 2222211 10 000 1236789999999997 79
Q ss_pred eEEEEeCC-----CCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC---CCCEEEEE
Q 001380 614 RLFISDSN-----HNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT---ENHALREI 684 (1089)
Q Consensus 614 ~L~vsd~~-----~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~---~n~~I~~~ 684 (1089)
+|||+|++ .++|+++|++ |+.+.++......+ .....|++|+++++++.+||+|. .++.|.++
T Consensus 79 ~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~--------~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~ 150 (343)
T 2qe8_A 79 IVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPIT--------LSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRV 150 (343)
T ss_dssp EEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTS--------CTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEE
T ss_pred cEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhc--------ccccccceEEEecCCCEEEEEcCccCCCCeEEEE
Confidence 99999987 5899999986 77677765431111 12357899999987667999999 88999999
Q ss_pred ECCCCeEEEEecC--CCCC--CCCC-CCC-------ccccc-ccCCceeEEEecCCCEEEEEECCCcEEEEEECC---CC
Q 001380 685 DFVNDTVRTLAGN--GTKG--SDYQ-GGE-------KGTSQ-LLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTV---DG 748 (1089)
Q Consensus 685 d~~~g~v~~~ag~--g~~~--~~~~-~~~-------~~~~~-~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~---~g 748 (1089)
|+.++.+..+... +... .... .+. .+... ....|.+|+++|+|+.||+++...++|++++.. .+
T Consensus 151 d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~ 230 (343)
T 2qe8_A 151 DLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNL 230 (343)
T ss_dssp ETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCT
T ss_pred ECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCC
Confidence 9988877665432 1100 0000 000 00000 113589999999999999999999999999842 11
Q ss_pred eEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCC
Q 001380 749 VTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRD 828 (1089)
Q Consensus 749 ~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~d 828 (1089)
.+ +.+... ...........|.||++|++| +||+++.++++|.++++.++...++...
T Consensus 231 ~~----~~~~~~---~~~~~~g~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~~G~~~~~~~~--------------- 287 (343)
T 2qe8_A 231 QL----TDAELG---SKIERYSEKPICDGISIDKDH-NIYVGDLAHSAIGVITSADRAYKLLVTD--------------- 287 (343)
T ss_dssp TC----CHHHHH---TTCEEEEECCSCSCEEECTTC-CEEEEEGGGTEEEEEETTTTEEEEEEEC---------------
T ss_pred CC----Chhhhh---cceEecccCCCCceEEECCCC-CEEEEccCCCeEEEEECCCCCEEEEEEC---------------
Confidence 10 000000 000000112379999999998 9999999999999999844555444321
Q ss_pred CccccccccCceEEEEccCCcEEEEeCCCCEEEEE
Q 001380 829 GMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKL 863 (1089)
Q Consensus 829 g~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~ 863 (1089)
..+.+|.+++++++|++||++...+++..|
T Consensus 288 -----~~~~~p~~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 288 -----EKLSWTDSFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp -----GGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred -----CceecCCeeEECCCCcEEEEeCcccccccc
Confidence 136789999999999999999876665444
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.66 E-value=5e-15 Score=168.90 Aligned_cols=283 Identities=11% Similarity=0.139 Sum_probs=172.4
Q ss_pred CCCCCCCCCceEEEeecCCe-EEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeC---CCE
Q 001380 595 LFTSPLKFPGKLAIDILNNR-LFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAK---KNL 670 (1089)
Q Consensus 595 ~~~~~l~~P~~vavd~~~g~-L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~---g~~ 670 (1089)
.+++.|..|.+|++++ +|+ |||++.. ++|.+++.+|+....+..... -.. .....|.||+++|+ +..
T Consensus 12 ~va~~l~~P~~i~~~p-dG~~l~V~e~~-G~i~~~~~~g~~~~~~~~~~~-v~~------~g~~g~~gia~~pdf~~~g~ 82 (353)
T 2g8s_A 12 VLQDKLDHPWALAFLP-DNHGMLITLRG-GELRHWQAGKGLSAPLSGVPD-VWA------HGQGGLLDVVLAPDFAQSRR 82 (353)
T ss_dssp EEEEEESSEEEEEECS-TTCCEEEEETT-TEEEEEETTTEECCCCBSCCC-CCC------STTCSEEEEEECTTHHHHCE
T ss_pred EEECCCCCcEEEEEcC-CCCEEEEEeCC-ceEEEEeCCCceeeEecCCcc-ccc------CCCCCceeEEECCCCCCCCE
Confidence 4456799999999998 788 9999984 899999988765433322110 000 01235799999995 556
Q ss_pred EEEEECC-------CCEEEEEECCCC-----eEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC--
Q 001380 671 LYVADTE-------NHALREIDFVND-----TVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG-- 736 (1089)
Q Consensus 671 lyVaD~~-------n~~I~~~d~~~g-----~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~-- 736 (1089)
|||+++. .++|.+++.+++ ..+++.. +... ......++.+|+++|+| .|||+...
T Consensus 83 lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~-~~p~---------~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~ 151 (353)
T 2g8s_A 83 IWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFR-QMPK---------LSTGNHFGGRLVFDGKG-YLFIALGENN 151 (353)
T ss_dssp EEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEE-CSSC---------CBSSSCCCCCEEECSSS-EEEEEECCTT
T ss_pred EEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEE-ECCC---------CCCCcccCccEEECCCC-cEEEEECCCC
Confidence 9999865 468998887643 2233321 1100 00113468899999988 99999743
Q ss_pred -----------CcEEEEEECCCCeEEEEeCCCccccCCC--CCCCCccccCCceEEEcCCCCEEEEEeCCCC---eEEEE
Q 001380 737 -----------QHQIWEHSTVDGVTRAFSGDGYERNLNG--SSSLNTSFAQPSGISLSPDFMEIYVADSESS---SIRAL 800 (1089)
Q Consensus 737 -----------~~~I~~~~~~~g~~~~~~g~g~~~~~~g--~~~~~~~~~~P~glav~~~g~~lyvad~~~~---~I~~~ 800 (1089)
.++|+++++++... .++. .....+ ......++.+|.||+++++.+.||++|.+.+ .|.++
T Consensus 152 ~~~~~q~~~~~~g~I~ri~~dG~~p---~~np-f~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i 227 (353)
T 2g8s_A 152 QRPTAQDLDKLQGKLVRLTDQGEIP---DDNP-FIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIP 227 (353)
T ss_dssp CGGGGGCTTSCTTEEEEEETTSCCC---TTCT-TTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECC
T ss_pred CCCccCCCCCCCeEEEEECCCCCCC---CCCC-CcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEe
Confidence 24788888764210 0110 000000 0112245788999999994449999998754 34433
Q ss_pred EcCCCCeEEEecCCCCCCCCcc-------ccCC-----CCCccc-c---ccccCceEEEEcc-------CCcEEEEeCCC
Q 001380 801 NLKTGGSRLLAGGDPIFPDNLF-------KFGD-----RDGMGS-E---VLLQHPLGVYCAK-------NGQIYVADSYN 857 (1089)
Q Consensus 801 ~~~~~~~~~~~g~~~~~~~~l~-------~~g~-----~dg~~~-~---~~l~~P~gva~~~-------~G~lyVaD~~n 857 (1089)
.. |+...++.... .++. ..+... . ..-..|.|+++.. +|++||++...
T Consensus 228 ~~---------G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~ 298 (353)
T 2g8s_A 228 QK---------GKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKD 298 (353)
T ss_dssp CT---------TCBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTT
T ss_pred cc---------CCcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccC
Confidence 22 11111111000 0000 000000 0 0013689999963 58999999999
Q ss_pred CEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEE-ECCCCEEEEEeC
Q 001380 858 HKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIA-DTNNNIIRYLDL 920 (1089)
Q Consensus 858 ~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVa-d~~n~~I~~~~~ 920 (1089)
++|.+++.+++.+...... ....+..|.+|+++++|.|||+ |..+++|.++.+
T Consensus 299 ~~v~~~~~~~~~~~~~~~~----------~~~~~~rp~~v~~~pdG~lyv~td~~~g~I~ri~~ 352 (353)
T 2g8s_A 299 KDVIVMSVNGDKVTEDGRI----------LTDRGQRIRDVRTGPDGYLYVLTDESSGELLKVSP 352 (353)
T ss_dssp TEEEEEEEETTEEEEEEEE----------SGGGCCCEEEEEECTTSCEEEEECSTTEEEEEEEC
T ss_pred CEEEEEEeCCCeEeeeEEc----------ccCCCCceeEEEECCCCcEEEEEeCCCCEEEEEeC
Confidence 9999998876543221110 0113468999999999999997 667899998875
|
| >2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.3e-18 Score=187.21 Aligned_cols=119 Identities=16% Similarity=0.252 Sum_probs=102.0
Q ss_pred cHHHHHHHHHhCCCeEEEEcCCChHhH--H--HHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHc----CCCCC
Q 001380 169 GALELINQCKSKGLKVAVASSADRIKV--D--ANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKIL----NVPTS 240 (1089)
Q Consensus 169 G~~~lL~~Lk~~Gi~vaIvSn~~~~~~--~--~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~l----gv~p~ 240 (1089)
...++++.|+++|++ +|+||...... . ..++..++. .+|+.+++++++..+||+|++|+.+++++ |++|+
T Consensus 149 ~~~~l~~~L~~~g~~-~i~tn~~~~~~~~~~~~~~~~~~l~-~~f~~~~~~~~~~~~KP~p~~~~~a~~~l~~~~~~~~~ 226 (284)
T 2hx1_A 149 DLNKTVNLLRKRTIP-AIVANTDNTYPLTKTDVAIAIGGVA-TMIESILGRRFIRFGKPDSQMFMFAYDMLRQKMEISKR 226 (284)
T ss_dssp HHHHHHHHHHHCCCC-EEEECCCSEEECSSSCEEECHHHHH-HHHHHHHCSCEEEESTTSSHHHHHHHHHHHTTSCCCGG
T ss_pred cHHHHHHHHhcCCCe-EEEECCCccccCcCCCccccCChHH-HHHHHHhCCceeEecCCCHHHHHHHHHHHhhccCCCcc
Confidence 677788899999999 99999876654 2 123455674 78999999998999999999999999999 99999
Q ss_pred cEEEEcCCh-hhHHHHHHcCCeEEEEcCCC-CHHHHh----h--cCCcEEecCcccC
Q 001380 241 ECIVIEDAL-AGVQAAKAAQMRCIAVTTTL-SEERLK----E--ASPSLIRKEIGSV 289 (1089)
Q Consensus 241 ~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~-~~~~l~----~--~~~d~vi~dl~el 289 (1089)
+|+||||++ +||.+|+++||++++|.+|. ..+++. . ..|+++++++.+|
T Consensus 227 ~~~~VGD~~~~Di~~A~~aG~~~i~v~~g~~~~~~l~~~~~~~~~~pd~~~~~l~el 283 (284)
T 2hx1_A 227 EILMVGDTLHTDILGGNKFGLDTALVLTGNTRIDDAETKIKSTGIVPTHICESAVIE 283 (284)
T ss_dssp GEEEEESCTTTHHHHHHHHTCEEEEESSSSSCGGGHHHHHHHHTCCCSEEESCSCCC
T ss_pred eEEEECCCcHHHHHHHHHcCCeEEEECCCCCCHHHHHhhhhccCCCCCEEccchhhh
Confidence 999999996 99999999999999999987 455554 3 6899999999887
|
| >3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-15 Score=162.29 Aligned_cols=179 Identities=12% Similarity=-0.006 Sum_probs=119.9
Q ss_pred CCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHh--------h--hcCCCHHHHHHHHHhhcCCCCCCHHHH
Q 001380 77 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFL--------P--FMGTGEANFLGGVASVKGVKGFDSEAA 146 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (1089)
+++++|+||+||||+|++... .+...+...++......+. . .-..+...+...+..... ....++.
T Consensus 2 ~~~k~viFDlDGTL~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~ 77 (232)
T 3fvv_A 2 TTRRLALFDLDHTLLPLDSDY--QWADFLARTGRAGDPAEARRRNDDLMERYNRGELTAEQAAEFMLGLLA--AHSPVEL 77 (232)
T ss_dssp CCCEEEEECCBTTTBSSCHHH--HHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHH--TSCHHHH
T ss_pred CCCcEEEEeCCCCCcCCchHH--HHHHHHHHcCCCCccHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhc--CCCHHHH
Confidence 346999999999999998653 4555555555430111110 0 011122333322222111 2233333
Q ss_pred HHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcC----------
Q 001380 147 KKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSAD---------- 216 (1089)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~---------- 216 (1089)
.+.+.+.+.+.+ .. .++||+.++|+.|+++|++++|+||+....++.+++.+|+. .++...+..+
T Consensus 78 ~~~~~~~~~~~~-~~---~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~g~~~~ 152 (232)
T 3fvv_A 78 AAWHEEFMRDVI-RP---SLTVQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGVQ-HLIATDPEYRDGRYTGRIEG 152 (232)
T ss_dssp HHHHHHHHHHTT-GG---GCCHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCC-EEEECEEEEETTEEEEEEES
T ss_pred HHHHHHHHHHhh-hh---hcCHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC-EEEEcceEEECCEEeeeecC
Confidence 333333333222 21 57999999999999999999999999999999999999996 6654332211
Q ss_pred CccCCCCCHHHHHHHHHHcC---CCCCcEEEEcCChhhHHHHHHcCCeEEE
Q 001380 217 AFENLKPAPDIFLSASKILN---VPTSECIVIEDALAGVQAAKAAQMRCIA 264 (1089)
Q Consensus 217 ~~~~~KP~~~~~~~~l~~lg---v~p~~~v~VGD~~~Di~aA~~aG~~~i~ 264 (1089)
....+++++..++.+++++| +++++|+||||+.+|+.+++.+|+.++.
T Consensus 153 ~~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~vGDs~~D~~~~~~ag~~~~~ 203 (232)
T 3fvv_A 153 TPSFREGKVVRVNQWLAGMGLALGDFAESYFYSDSVNDVPLLEAVTRPIAA 203 (232)
T ss_dssp SCSSTHHHHHHHHHHHHHTTCCGGGSSEEEEEECCGGGHHHHHHSSEEEEE
T ss_pred CCCcchHHHHHHHHHHHHcCCCcCchhheEEEeCCHhhHHHHHhCCCeEEE
Confidence 22335778899999999999 9999999999999999999999977654
|
| >1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.1e-17 Score=179.45 Aligned_cols=121 Identities=16% Similarity=0.243 Sum_probs=101.4
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhH--HHHHHH-CCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCC
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKV--DANLAA-AGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTS 240 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~--~~~l~~-~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~ 240 (1089)
..++|++.++++.|+ +|+++ |+||.+.... ...+.. .++. .+|+.++++++...+||+|.+|+.++++ ++|+
T Consensus 129 ~~~~~~~~~~l~~L~-~g~~~-i~tn~~~~~~~~~~~l~~~~~l~-~~~~~~~~~~~~~~~KP~~~~~~~~~~~--~~~~ 203 (263)
T 1zjj_A 129 DLTYEKLKYATLAIR-NGATF-IGTNPDATLPGEEGIYPGAGSII-AALKVATNVEPIIIGKPNEPMYEVVREM--FPGE 203 (263)
T ss_dssp TCBHHHHHHHHHHHH-TTCEE-EESCCCSEEEETTEEEECHHHHH-HHHHHHHCCCCEECSTTSHHHHHHHHHH--STTC
T ss_pred CCCHHHHHHHHHHHH-CCCEE-EEECCCccccCCCCCcCCcHHHH-HHHHHHhCCCccEecCCCHHHHHHHHHh--CCcc
Confidence 367899999999999 89998 9999876443 222222 3453 6688888888888999999999999999 9999
Q ss_pred cEEEEcCCh-hhHHHHHHcCCeEEEEcCCC-CHHHHhhc--CCcEEecCcccC
Q 001380 241 ECIVIEDAL-AGVQAAKAAQMRCIAVTTTL-SEERLKEA--SPSLIRKEIGSV 289 (1089)
Q Consensus 241 ~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~-~~~~l~~~--~~d~vi~dl~el 289 (1089)
+++||||++ +||.+|+++||++++|.+|. ..+++... .|+++++++.++
T Consensus 204 ~~~~VGD~~~~Di~~A~~aG~~~i~v~~g~~~~~~~~~~~~~p~~~~~~l~el 256 (263)
T 1zjj_A 204 ELWMVGDRLDTDIAFAKKFGMKAIMVLTGVSSLEDIKKSEYKPDLVLPSVYEL 256 (263)
T ss_dssp EEEEEESCTTTHHHHHHHTTCEEEEESSSSCCHHHHTTCSSCCSEEESSGGGG
T ss_pred cEEEECCChHHHHHHHHHcCCeEEEECCCCCChHHHHhcCCCCCEEECCHHHH
Confidence 999999997 99999999999999999987 45666543 799999999988
|
| >2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.5e-16 Score=160.89 Aligned_cols=102 Identities=15% Similarity=0.196 Sum_probs=90.8
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCC---------------ChHhHHHHHHHCCCCCCCccEEEEc-----CCccCCCCC
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSA---------------DRIKVDANLAAAGLPVSMFDAIVSA-----DAFENLKPA 224 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~---------------~~~~~~~~l~~~gl~~~~fd~i~~~-----~~~~~~KP~ 224 (1089)
.++||+.++|+.|+++|++++|+||. ....++..++.+|+. |+.++.+ ++....||+
T Consensus 42 ~~~pg~~e~L~~L~~~G~~l~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~---fd~v~~s~~~~~~~~~~~KP~ 118 (176)
T 2fpr_A 42 AFEPGVIPQLLKLQKAGYKLVMITNQDGLGTQSFPQADFDGPHNLMMQIFTSQGVQ---FDEVLICPHLPADECDCRKPK 118 (176)
T ss_dssp CBCTTHHHHHHHHHHTTEEEEEEEECTTTTBTTBCHHHHHHHHHHHHHHHHHTTCC---EEEEEEECCCGGGCCSSSTTS
T ss_pred cCCccHHHHHHHHHHCCCEEEEEECCccccccccchHhhhhhHHHHHHHHHHcCCC---eeEEEEcCCCCcccccccCCC
Confidence 68999999999999999999999998 577889999999995 8988754 778889999
Q ss_pred HHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC
Q 001380 225 PDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL 269 (1089)
Q Consensus 225 ~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~ 269 (1089)
|++|+.+++++|++|++|+||||+.+|+++|+++||++++|.++.
T Consensus 119 p~~~~~~~~~~gi~~~~~l~VGD~~~Di~~A~~aG~~~i~v~~~~ 163 (176)
T 2fpr_A 119 VKLVERYLAEQAMDRANSYVIGDRATDIQLAENMGINGLRYDRET 163 (176)
T ss_dssp CGGGGGGC----CCGGGCEEEESSHHHHHHHHHHTSEEEECBTTT
T ss_pred HHHHHHHHHHcCCCHHHEEEEcCCHHHHHHHHHcCCeEEEEcCCc
Confidence 999999999999999999999999999999999999999998874
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.5e-14 Score=159.81 Aligned_cols=208 Identities=15% Similarity=0.168 Sum_probs=156.2
Q ss_pred cCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC
Q 001380 656 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA 735 (1089)
Q Consensus 656 f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~ 735 (1089)
+..+.|.+++++|+.||++|..+++|.+++.+ +.++.+.... ..|.+++++++| .||+++.
T Consensus 44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~~~~~~~-----------------~~~~gl~~d~dG-~l~v~~~ 104 (305)
T 3dr2_A 44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVDVLLDAT-----------------AFTNGNAVDAQQ-RLVHCEH 104 (305)
T ss_dssp CSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEEEEEESC-----------------SCEEEEEECTTS-CEEEEET
T ss_pred CcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEEEEeCCC-----------------CccceeeECCCC-CEEEEEC
Confidence 44789999999999999999999999999984 5566664211 368999999988 6999999
Q ss_pred CCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeC-----------------CCCeEE
Q 001380 736 GQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADS-----------------ESSSIR 798 (1089)
Q Consensus 736 ~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~-----------------~~~~I~ 798 (1089)
+.++|.+++++ |..+.+..... ...+..|++|+++++| .+|++|. ..+.|+
T Consensus 105 ~~~~v~~~~~~-g~~~~~~~~~~----------~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~ 172 (305)
T 3dr2_A 105 GRRAITRSDAD-GQAHLLVGRYA----------GKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVY 172 (305)
T ss_dssp TTTEEEEECTT-SCEEEEECEET----------TEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEE
T ss_pred CCCEEEEECCC-CCEEEEEeccC----------CCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEE
Confidence 98999999987 66666653210 1335679999999998 8999874 136799
Q ss_pred EEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEEEeCCC-----CEEEEEeCCCCeEEE
Q 001380 799 ALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADSYN-----HKIKKLDPASNRVST 872 (1089)
Q Consensus 799 ~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~~n-----~~I~~~d~~~~~v~t 872 (1089)
+++++++....+. + +..|.|++++++|+ |||+|+.+ ++|.+++.+++.+..
T Consensus 173 ~~d~~~g~~~~~~-~----------------------~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~ 229 (305)
T 3dr2_A 173 RLPPDGSPLQRMA-D----------------------LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHD 229 (305)
T ss_dssp EECSSSCCCEEEE-E----------------------ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEE
T ss_pred EEcCCCCcEEEEe-c----------------------CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccC
Confidence 9998766655442 1 45799999999996 99999874 899999876554321
Q ss_pred EeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCCCceEEEEe
Q 001380 873 LAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKEEPELQTLE 931 (1089)
Q Consensus 873 ~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~~~~~~~l~ 931 (1089)
..... ......|.||++|++|+|||+. .+.|.++++++. .+.++.
T Consensus 230 ~~~~~----------~~~~~~pdgi~~d~~G~lwv~~--~~gv~~~~~~g~--~~~~~~ 274 (305)
T 3dr2_A 230 RRHFA----------SVPDGLPDGFCVDRGGWLWSSS--GTGVCVFDSDGQ--LLGHIP 274 (305)
T ss_dssp EEEEE----------CCSSSCCCSEEECTTSCEEECC--SSEEEEECTTSC--EEEEEE
T ss_pred CeEEE----------ECCCCCCCeEEECCCCCEEEec--CCcEEEECCCCC--EEEEEE
Confidence 11000 0012459999999999999998 457999999776 555554
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.2e-13 Score=155.80 Aligned_cols=246 Identities=23% Similarity=0.388 Sum_probs=191.4
Q ss_pred CCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCE
Q 001380 602 FPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHA 680 (1089)
Q Consensus 602 ~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~ 680 (1089)
.|..+++++.+..||++....+.|.++|.. |+.+..+... ..+.+++++++|+.||++...++.
T Consensus 33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~---------------~~v~~~~~spdg~~l~~~~~~~~~ 97 (391)
T 1l0q_A 33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG---------------SSPQGVAVSPDGKQVYVTNMASST 97 (391)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS---------------SSEEEEEECTTSSEEEEEETTTTE
T ss_pred CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC---------------CCccceEECCCCCEEEEEECCCCE
Confidence 367899998666788999888999999985 6666666543 167999999999999999988899
Q ss_pred EEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccc
Q 001380 681 LREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYER 760 (1089)
Q Consensus 681 I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~ 760 (1089)
|+.+|..++........+ ..+.+++++++++.||++....+.|+.||..++........+
T Consensus 98 v~v~d~~~~~~~~~~~~~-----------------~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~--- 157 (391)
T 1l0q_A 98 LSVIDTTSNTVAGTVKTG-----------------KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG--- 157 (391)
T ss_dssp EEEEETTTTEEEEEEECS-----------------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC---
T ss_pred EEEEECCCCeEEEEEeCC-----------------CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC---
Confidence 999999988766554322 257899999999999999999999999999888765443211
Q ss_pred cCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCce
Q 001380 761 NLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPL 840 (1089)
Q Consensus 761 ~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~ 840 (1089)
..|.+++++++|+.||++....+.|+.+++.++........ -..+.
T Consensus 158 ------------~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~----------------------~~~~~ 203 (391)
T 1l0q_A 158 ------------RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV----------------------EAAPS 203 (391)
T ss_dssp ------------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC----------------------SSEEE
T ss_pred ------------CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec----------------------CCCcc
Confidence 24789999999999999999999999999987654433211 12478
Q ss_pred EEEEccCCc-EEEEeC--CCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEEEECCCCEEE
Q 001380 841 GVYCAKNGQ-IYVADS--YNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADTNNNIIR 916 (1089)
Q Consensus 841 gva~~~~G~-lyVaD~--~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~~n~~I~ 916 (1089)
+++++++|+ +|++.. .++.|+.+|..++.+...... -..|.+++++++|+ ||++...+++|+
T Consensus 204 ~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~--------------~~~~~~~~~s~dg~~l~~s~~~d~~v~ 269 (391)
T 1l0q_A 204 GIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV--------------GPDPAGIAVTPDGKKVYVALSFXNTVS 269 (391)
T ss_dssp EEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC--------------CSSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred ceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec--------------CCCccEEEEccCCCEEEEEcCCCCEEE
Confidence 899999984 788876 789999999987765443321 12478899999885 889999999999
Q ss_pred EEeCCCCCceEEEEe
Q 001380 917 YLDLNKEEPELQTLE 931 (1089)
Q Consensus 917 ~~~~~~~~~~~~~l~ 931 (1089)
++++... ..+.++.
T Consensus 270 v~d~~~~-~~~~~~~ 283 (391)
T 1l0q_A 270 VIDTATN-TITATMA 283 (391)
T ss_dssp EEETTTT-EEEEEEE
T ss_pred EEECCCC-cEEEEEE
Confidence 9999876 2344444
|
| >4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.1e-16 Score=156.26 Aligned_cols=125 Identities=14% Similarity=0.086 Sum_probs=105.9
Q ss_pred cCCCCCCCCCCccccCCCC------C--ceeeccccc-CCCEE-EEEEecCCCcchhh-hhhhHHHHHHHcCCCCE-EEE
Q 001380 423 NRKTTPIVPEFPAKLDWLN------T--APLQFRRDL-KGKVV-VLDFWTYCCINCMH-VLPDLEFLEKKYKDMPF-TVV 490 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~------g--~~~~l~~~~-~gk~v-ll~Fwa~wC~~C~~-~~p~l~~l~~~~~~~~v-~vi 490 (1089)
..++|+++|+.++..-.-+ + ++++| +++ +||++ |++||+.|||.|.. |+|.|++++++|+++|+ .||
T Consensus 9 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~vsL-sd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g~d~Vi 87 (176)
T 4f82_A 9 MIQVGDALPDAQLFEFIDDAREGCTLGPNACSV-RDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAGIDEIW 87 (176)
T ss_dssp CCCTTCBCCCCEEEEEECSCCTTCCSEEEEEEH-HHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCEEE
T ss_pred hhhcCCcCCceEEEEecccccccccCCceEEeH-HHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEE
Confidence 3579999999886532111 1 47889 786 99965 55677999999999 99999999999999999 999
Q ss_pred EEeCCCCCChhcHHHHHHHHHHcCCc--cceeecCChhHHHHhCCC-----------ceeEEEEECCCCcEEEEecCC
Q 001380 491 GVHSAKFDNEKDLEAIRNAVLRYGIS--HPVVNDGDMNLWRELGVN-----------SWPTFAVVGPNGKLLAQLAGE 555 (1089)
Q Consensus 491 ~v~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~d~~~~l~~~~~v~-----------~~Pt~~lid~~G~i~~~~~G~ 555 (1089)
+||. +++...++|.++++++ ||++.|.+.+++++||+. ..|++||| ++|+|++.+.++
T Consensus 88 gIS~------D~~~~~~~f~~~~~l~~~f~lLsD~~~~va~ayGv~~~~~~~G~g~~s~R~tfII-~dG~I~~~~~~~ 158 (176)
T 4f82_A 88 CVSV------NDAFVMGAWGRDLHTAGKVRMMADGSAAFTHALGLTQDLSARGMGIRSLRYAMVI-DGGVVKTLAVEA 158 (176)
T ss_dssp EEES------SCHHHHHHHHHHTTCTTTSEEEECTTCHHHHHHTCEEECGGGTCCEEECCEEEEE-ETTEEEEEEECC
T ss_pred EEeC------CCHHHHHHHHHHhCCCCCceEEEcCchHHHHHhCCCccccccCCCcccccEEEEE-cCCEEEEEEEcC
Confidence 9986 5788899999999999 999999999999999984 25899999 999999997754
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-13 Score=157.15 Aligned_cols=268 Identities=12% Similarity=0.108 Sum_probs=175.6
Q ss_pred CCCCCceEEEeecCCeEEEEeC---CCCEEEEE--eCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEE
Q 001380 599 PLKFPGKLAIDILNNRLFISDS---NHNRIVVT--DLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYV 673 (1089)
Q Consensus 599 ~l~~P~~vavd~~~g~L~vsd~---~~~~I~~~--~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyV 673 (1089)
....|..+++++.+..||+++. .+++|.++ +.++..+..+...... -..|.++++ +|+.||+
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~-----------~~~p~~~~~--dg~~l~~ 114 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTM-----------GADPCYLTT--NGKNIVT 114 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECS-----------SSCEEEEEE--CSSEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccC-----------CCCcEEEEE--CCCEEEE
Confidence 3467889999996667999987 35677655 4442333333221011 137889998 7888999
Q ss_pred EECCCCEEEEEECCC-CeEEEEe----cCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCC-
Q 001380 674 ADTENHALREIDFVN-DTVRTLA----GNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVD- 747 (1089)
Q Consensus 674 aD~~n~~I~~~d~~~-g~v~~~a----g~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~- 747 (1089)
++..++.|..+++.. +.+..+. -.|. +.....+....|++++++|+|+.||+++.+.+.|+.|+...
T Consensus 115 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~-------~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~ 187 (361)
T 3scy_A 115 ANYSGGSITVFPIGQDGALLPASDVIEFKGS-------GPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPN 187 (361)
T ss_dssp EETTTTEEEEEEBCTTSCBCSCSEEEECCCC-------CSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred EECCCCEEEEEEeCCCCcCcccceeEEccCC-------CCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCC
Confidence 999899999999863 3332221 1111 11112233457899999999999999999999888876543
Q ss_pred -C----e-EEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCc
Q 001380 748 -G----V-TRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNL 821 (1089)
Q Consensus 748 -g----~-~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l 821 (1089)
+ . +.......... ......|.+++++|+|+.||+++..+++|+.++.+++....+....
T Consensus 188 ~~~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~------- 252 (361)
T 3scy_A 188 ANADNKEKFLTKGTPEAFK--------VAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVA------- 252 (361)
T ss_dssp CCTTTCCCCEEEEEEEEEE--------CCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEE-------
T ss_pred CCcccccceeeccccccee--------cCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEe-------
Confidence 2 1 21110000000 0112358899999999999999998999999998866543332100
Q ss_pred cccCCCCCccccccccCceEEEEccCCc-EEEEeCC-CCEEEEEeC--CCCeEEEEeccCCCCCCCCcccccccCCCceE
Q 001380 822 FKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADSY-NHKIKKLDP--ASNRVSTLAGIGKAGFKDGAALAAQLSEPAGI 897 (1089)
Q Consensus 822 ~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~~-n~~I~~~d~--~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi 897 (1089)
. .......|.++++++||+ ||+++.. .+.|..++. .++.+..+..... -..|.++
T Consensus 253 ----~-----~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~------------g~~~~~~ 311 (361)
T 3scy_A 253 ----A-----DTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT------------GIHPRNF 311 (361)
T ss_dssp ----S-----CSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC------------SSCCCEE
T ss_pred ----c-----CCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC------------CCCCceE
Confidence 0 001134678999999996 8999988 788888654 4666554432110 1359999
Q ss_pred EEccCCc-EEEEECCCCEEEEEeCCC
Q 001380 898 IEAQNGN-LFIADTNNNIIRYLDLNK 922 (1089)
Q Consensus 898 ~vd~~G~-lyVad~~n~~I~~~~~~~ 922 (1089)
+++++|+ ||+++..+++|.++..+.
T Consensus 312 ~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 312 IITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp EECTTSCEEEEEETTTTEEEEEEECT
T ss_pred EECCCCCEEEEEECCCCCEEEEEEEC
Confidence 9999996 999998899999965553
|
| >1q92_A 5(3)-deoxyribonucleotidase; alpha-beta rossman fold, hydrolase; HET: DRM; 1.40A {Homo sapiens} SCOP: c.108.1.8 PDB: 1mh9_A* 1q91_A* 1z4m_A* 1z4i_A* 1z4j_A* 1z4l_A* 1z4k_A* 1z4p_X* 1z4q_A* 2jau_A* 2jaw_A* 3u19_A* 3u13_A 4e88_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-17 Score=172.70 Aligned_cols=182 Identities=18% Similarity=0.171 Sum_probs=132.7
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDK 157 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (1089)
++++|+|||||||+|+...+..++.++++++ ...+.+++. +.+....+.. . .. . ...++.+.|.+.
T Consensus 3 ~~k~viFDlDGTL~Ds~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~----~--~~-~---~~~~~~~~~~~~ 68 (197)
T 1q92_A 3 RALRVLVDMDGVLADFEGGFLRKFRARFPDQ-PFIALEDRR---GFWVSEQYGR----L--RP-G---LSEKAISIWESK 68 (197)
T ss_dssp CCEEEEECSBTTTBCHHHHHHHHHHHHCTTS-CCCCGGGCC---SSCHHHHHHH----H--ST-T---HHHHHHHHHTST
T ss_pred CceEEEEeCCCCCccCcHHHHHHHHHHHhcC-CCCCHHHhc---CCcHHHHHHh----c--CH-H---HHHHHHHHHHhh
Confidence 4689999999999999999999999998877 334444432 2233332222 1 11 1 122333333332
Q ss_pred hcCCCCCCCCccHHHHHHHHHhC-CCeEEEEcCCChHhHHHHHHHCCCCCC-CccEEEEcCCccCCCCCHHHHHHHHHHc
Q 001380 158 YAKPNSGIGFPGALELINQCKSK-GLKVAVASSADRIKVDANLAAAGLPVS-MFDAIVSADAFENLKPAPDIFLSASKIL 235 (1089)
Q Consensus 158 ~~~~~~~~~~pG~~~lL~~Lk~~-Gi~vaIvSn~~~~~~~~~l~~~gl~~~-~fd~i~~~~~~~~~KP~~~~~~~~l~~l 235 (1089)
.. .....++||+.++|+.|+++ |++++|+||+.+..++..++++|+. . +|+ ..+++++
T Consensus 69 ~~-~~~~~~~~g~~e~L~~L~~~~g~~~~ivT~~~~~~~~~~l~~~~l~-~~~f~------------------~~~~~~l 128 (197)
T 1q92_A 69 NF-FFELEPLPGAVEAVKEMASLQNTDVFICTSPIKMFKYCPYEKYAWV-EKYFG------------------PDFLEQI 128 (197)
T ss_dssp TT-TTTCCBCTTHHHHHHHHHHSTTEEEEEEECCCSCCSSHHHHHHHHH-HHHHC------------------GGGGGGE
T ss_pred hh-hhcCCcCcCHHHHHHHHHhcCCCeEEEEeCCccchHHHHHHHhchH-HHhch------------------HHHHHHh
Confidence 11 11347899999999999999 9999999999988888899999985 6 775 5688999
Q ss_pred CCCCCcEEEEcCChhh----HHHHH-HcCCeEEEEcCCCCHHHHhhcCCcE-EecCcc-cCCHHHHHhc
Q 001380 236 NVPTSECIVIEDALAG----VQAAK-AAQMRCIAVTTTLSEERLKEASPSL-IRKEIG-SVSLNDILTG 297 (1089)
Q Consensus 236 gv~p~~~v~VGD~~~D----i~aA~-~aG~~~i~V~~g~~~~~l~~~~~d~-vi~dl~-el~i~~ll~~ 297 (1089)
|+.|++|+||||+..| +.+|+ ++||.+|++.++.... ....+++ .+.++. ++ ..+|+.
T Consensus 129 ~~~~~~~~~vgDs~~dD~~~~~~a~~~aG~~~i~~~~~~~~~--~~~~~~~~~v~~~~~~l--~~~l~~ 193 (197)
T 1q92_A 129 VLTRDKTVVSADLLIDDRPDITGAEPTPSWEHVLFTACHNQH--LQLQPPRRRLHSWADDW--KAILDS 193 (197)
T ss_dssp EECSCSTTSCCSEEEESCSCCCCSCSSCSSEEEEECCTTTTT--CCCCTTCEEECCTTSCH--HHHHHT
T ss_pred ccCCccEEEECcccccCCchhhhcccCCCceEEEecCccccc--ccccccchhhhhHHHHH--HHHhcc
Confidence 9999999999999988 99999 9999999998875432 1223444 688884 55 666653
|
| >2i7d_A 5'(3')-deoxyribonucleotidase, cytosolic type; hydrolase; HET: DUR; 1.20A {Homo sapiens} PDB: 2jar_A* 2jao_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-17 Score=173.23 Aligned_cols=180 Identities=17% Similarity=0.132 Sum_probs=129.1
Q ss_pred ceEEEEecCCcccCCchHHHHHHHHHHHHcCCC-CCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHH
Q 001380 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVE-VTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDK 157 (1089)
Q Consensus 79 ~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (1089)
.++|+||+||||+|+...+..++.++++ |++ .+.+++..+. ....+..+ .. +..+++.+.|.+.
T Consensus 2 ~k~viFDlDGTL~Ds~~~~~~~~~~~~~--g~~~~~~~~~~~~~---~~~~~~~~-----~~-----~~~~~~~~~~~~~ 66 (193)
T 2i7d_A 2 SVRVLVDMDGVLADFEAGLLRGFRRRFP--EEPHVPLEQRRGFL---AREQYRAL-----RP-----DLADKVASVYEAP 66 (193)
T ss_dssp CEEEEECSBTTTBCHHHHHHHHHHHHST--TSCCCCGGGCCSSC---HHHHHHHH-----CT-----THHHHHHHHHTST
T ss_pred CcEEEEECCCcCccchhHHHHHHHHHhc--CCCCCCHHHHHHhh---HHHHHHHH-----hH-----HHHHHHHHHHHhc
Confidence 4799999999999999999999998887 775 5555554332 12222221 11 1233444444332
Q ss_pred hcCCCCCCCCccHHHHHHHHHhC-CCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcC
Q 001380 158 YAKPNSGIGFPGALELINQCKSK-GLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILN 236 (1089)
Q Consensus 158 ~~~~~~~~~~pG~~~lL~~Lk~~-Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lg 236 (1089)
.. .....++||+.++|+.|+++ |++++|+||+....++..++++|+ ||.+++++ +++++|
T Consensus 67 ~~-~~~~~~~~g~~e~L~~L~~~~g~~~~ivT~~~~~~~~~~l~~~gl----f~~i~~~~--------------~~~~~~ 127 (193)
T 2i7d_A 67 GF-FLDLEPIPGALDAVREMNDLPDTQVFICTSPLLKYHHCVGEKYRW----VEQHLGPQ--------------FVERII 127 (193)
T ss_dssp TT-TTTCCBCTTHHHHHHHHHTSTTEEEEEEECCCSSCTTTHHHHHHH----HHHHHCHH--------------HHTTEE
T ss_pred Cc-cccCccCcCHHHHHHHHHhCCCCeEEEEeCCChhhHHHHHHHhCc----hhhhcCHH--------------HHHHcC
Confidence 11 11347899999999999999 999999999998888899998887 67666542 789999
Q ss_pred CCCCcEEEEcCChhh----HHHHH-HcCCeEEEEcCCCCHHHHhhcCCcE-EecCcccCCHHHHH
Q 001380 237 VPTSECIVIEDALAG----VQAAK-AAQMRCIAVTTTLSEERLKEASPSL-IRKEIGSVSLNDIL 295 (1089)
Q Consensus 237 v~p~~~v~VGD~~~D----i~aA~-~aG~~~i~V~~g~~~~~l~~~~~d~-vi~dl~el~i~~ll 295 (1089)
++|++|+||||+..| +.+|+ ++||+++++.++.... ....+++ .+.++.+. +..+|
T Consensus 128 ~~~~~~~~vgDs~~dD~~~i~~A~~~aG~~~i~~~~~~~~~--~~~~~~~~~v~~~~~~-~~~~~ 189 (193)
T 2i7d_A 128 LTRDKTVVLGDLLIDDKDTVRGQEETPSWEHILFTCCHNRH--LVLPPTRRRLLSWSDN-WREIL 189 (193)
T ss_dssp ECSCGGGBCCSEEEESSSCCCSSCSSCSSEEEEECCGGGTT--CCCCTTSCEECSTTSC-HHHHH
T ss_pred CCcccEEEECCchhhCcHHHhhcccccccceEEEEeccCcc--cccccchHHHhhHHHH-HHHHh
Confidence 999999999999988 99999 9999999998754221 1123444 57888443 24444
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-13 Score=151.14 Aligned_cols=238 Identities=15% Similarity=0.099 Sum_probs=177.4
Q ss_pred CCeEEEEeCCCCEEEEEeC-CCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCe
Q 001380 612 NNRLFISDSNHNRIVVTDL-DGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDT 690 (1089)
Q Consensus 612 ~g~L~vsd~~~~~I~~~~~-~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~ 690 (1089)
.++++++++++++|..+|. +|+.+.++...+. ..++.++++|+|+ +|++ .++.|+.+|+++..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~-------------~~~~~~~~~pdG~-ilvs--~~~~V~~~d~~G~~ 67 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG-------------WECNSVAATKAGE-ILFS--YSKGAKMITRDGRE 67 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTT-------------CCCCEEEECTTSC-EEEE--CBSEEEEECTTSCE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc-------------CCCcCeEECCCCC-EEEe--CCCCEEEECCCCCE
Confidence 4689999999999999999 7999988876421 2578999999999 6774 47899999997667
Q ss_pred EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC-CcEEEEEECCCCeEEEEeCCCccccCCCCCCCC
Q 001380 691 VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG-QHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLN 769 (1089)
Q Consensus 691 v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~-~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~ 769 (1089)
+..+.. +.. ...+++.+.++| .++|++.+ +++|+.+++++..+..+...+.. .
T Consensus 68 ~W~~~~-~~~---------------~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~---------~ 121 (276)
T 3no2_A 68 LWNIAA-PAG---------------CEMQTARILPDG-NALVAWCGHPSTILEVNMKGEVLSKTEFETGI---------E 121 (276)
T ss_dssp EEEEEC-CTT---------------CEEEEEEECTTS-CEEEEEESTTEEEEEECTTSCEEEEEEECCSC---------S
T ss_pred EEEEcC-CCC---------------ccccccEECCCC-CEEEEecCCCCEEEEEeCCCCEEEEEeccCCC---------C
Confidence 777653 100 134677888888 67777777 89999999977766666532110 1
Q ss_pred ccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc
Q 001380 770 TSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ 849 (1089)
Q Consensus 770 ~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~ 849 (1089)
..+..|.+++++++| .+++++..+++|..+++++..+..+..+ ..|.++.+.++|+
T Consensus 122 ~~~~~~~~v~~~~~G-~~lv~~~~~~~v~~~d~~G~~~w~~~~~-----------------------~~~~~~~~~~~g~ 177 (276)
T 3no2_A 122 RPHAQFRQINKNKKG-NYLVPLFATSEVREIAPNGQLLNSVKLS-----------------------GTPFSSAFLDNGD 177 (276)
T ss_dssp SGGGSCSCCEECTTS-CEEEEETTTTEEEEECTTSCEEEEEECS-----------------------SCCCEEEECTTSC
T ss_pred cccccccCceECCCC-CEEEEecCCCEEEEECCCCCEEEEEECC-----------------------CCccceeEcCCCC
Confidence 234568899999998 7888999999999999984333233110 2578889999999
Q ss_pred EEEEeCCCCEEEEEeCC-CCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECC----------CCEEEEE
Q 001380 850 IYVADSYNHKIKKLDPA-SNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTN----------NNIIRYL 918 (1089)
Q Consensus 850 lyVaD~~n~~I~~~d~~-~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~----------n~~I~~~ 918 (1089)
++|++..+++|..+|++ +..+-++...... ...+..|.++++.++|++||+++. +.++..+
T Consensus 178 ~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~--------~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~ 249 (276)
T 3no2_A 178 CLVACGDAHCFVQLNLESNRIVRRVNANDIE--------GVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEI 249 (276)
T ss_dssp EEEECBTTSEEEEECTTTCCEEEEEEGGGSB--------SCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEE
T ss_pred EEEEeCCCCeEEEEeCcCCcEEEEecCCCCC--------CccccccccceEcCCCCEEEEeccCccccccccCCceEEEE
Confidence 99999999999999999 5555666532111 115778999999999999999963 3467778
Q ss_pred eCCCC
Q 001380 919 DLNKE 923 (1089)
Q Consensus 919 ~~~~~ 923 (1089)
+.+++
T Consensus 250 ~~~g~ 254 (276)
T 3no2_A 250 DSEGK 254 (276)
T ss_dssp CTTSB
T ss_pred CCCCC
Confidence 87775
|
| >2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.4e-17 Score=183.33 Aligned_cols=130 Identities=16% Similarity=0.242 Sum_probs=105.2
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhH--H-HHHHHCC-CCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCC
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKV--D-ANLAAAG-LPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPT 239 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~--~-~~l~~~g-l~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p 239 (1089)
..++|++.++++.|++.|+ ++|+||...... . ..++.+| +. .+|+.+++.++...+||++.+|+.+++++|++|
T Consensus 155 ~~~~~~~~~~l~~l~~~g~-~~i~tn~~~~~~~~~~~~~~~~g~l~-~~~~~~~~~~~~~~~KP~~~~~~~~~~~lgi~~ 232 (306)
T 2oyc_A 155 HFSFAKLREACAHLRDPEC-LLVATDRDPWHPLSDGSRTPGTGSLA-AAVETASGRQALVVGKPSPYMFECITENFSIDP 232 (306)
T ss_dssp TCCHHHHHHHHHHHTSTTS-EEEESCCCCEEECTTSCEEECHHHHH-HHHHHHHTCCCEECSTTSTHHHHHHHHHSCCCG
T ss_pred CCCHHHHHHHHHHHHcCCC-EEEEEcCCccccCCCCCcCCCCcHHH-HHHHHHhCCCceeeCCCCHHHHHHHHHHcCCCh
Confidence 3568999999999999999 999999865443 1 2223333 43 567777888888899999999999999999999
Q ss_pred CcEEEEcCCh-hhHHHHHHcCCeEEEEcCCC-CHHHHhh--------cCCcEEecCcccCCHHHHHhc
Q 001380 240 SECIVIEDAL-AGVQAAKAAQMRCIAVTTTL-SEERLKE--------ASPSLIRKEIGSVSLNDILTG 297 (1089)
Q Consensus 240 ~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~-~~~~l~~--------~~~d~vi~dl~el~i~~ll~~ 297 (1089)
++|+||||++ +|+++|+++|+.+++|.+|. ..+++.+ ..|+++++++.++ .+++..
T Consensus 233 ~e~l~vGD~~~~Di~~a~~aG~~~i~v~~g~~~~~~~~~~~~~~~~~~~pd~vi~~l~el--~~~l~~ 298 (306)
T 2oyc_A 233 ARTLMVGDRLETDILFGHRCGMTTVLTLTGVSRLEEAQAYLAAGQHDLVPHYYVESIADL--TEGLED 298 (306)
T ss_dssp GGEEEEESCTTTHHHHHHHHTCEEEEESSSSCCHHHHHHHHHTTCGGGSCSEEESSGGGG--GGGC--
T ss_pred HHEEEECCCchHHHHHHHHCCCeEEEECCCCCCHHHHHhhhcccccCCCCCEEECCHHHH--HHHHHh
Confidence 9999999997 99999999999999999987 4455543 5899999999988 444443
|
| >1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, protein structure initiative, joint center for structural G hydrolase; 2.40A {Thermotoga maritima} SCOP: c.108.1.14 PDB: 1pw5_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=7.7e-17 Score=177.04 Aligned_cols=122 Identities=20% Similarity=0.236 Sum_probs=98.7
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHH---HHHHCCCCCCCccEEEEcCC-ccCCCCCHHHHHHHHHHcCCCCC
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDA---NLAAAGLPVSMFDAIVSADA-FENLKPAPDIFLSASKILNVPTS 240 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~---~l~~~gl~~~~fd~i~~~~~-~~~~KP~~~~~~~~l~~lgv~p~ 240 (1089)
.+++++.++++.| +.|+++ ++||........ .++..++. .+|+.+++.+. ...+||++.+|+.+++++|++++
T Consensus 137 ~~~~~~~~~l~~l-~~~~~~-i~tn~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~kpk~~~~~~~~~~lgi~~~ 213 (271)
T 1vjr_A 137 LTYERLKKACILL-RKGKFY-IATHPDINCPSKEGPVPDAGSIM-AAIEASTGRKPDLIAGKPNPLVVDVISEKFGVPKE 213 (271)
T ss_dssp CCHHHHHHHHHHH-TTTCEE-EESCCCSEECCTTSCEECHHHHH-HHHHHHHSCCCSEECSTTSTHHHHHHHHHHTCCGG
T ss_pred cCHHHHHHHHHHH-HCCCeE-EEECCCccccCCCCccccccHHH-HHHHHHhCCCCcccCCCCCHHHHHHHHHHhCCCCc
Confidence 5688999999999 788998 999975432211 12222343 55677777777 88999999999999999999999
Q ss_pred cEEEEcCCh-hhHHHHHHcCCeEEEEcCCC-CHHHHhh--cCCcEEecCcccC
Q 001380 241 ECIVIEDAL-AGVQAAKAAQMRCIAVTTTL-SEERLKE--ASPSLIRKEIGSV 289 (1089)
Q Consensus 241 ~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~-~~~~l~~--~~~d~vi~dl~el 289 (1089)
+|+||||++ +|+++|+.+|+.+++|.+|. ..+++.. ..|+++++++.++
T Consensus 214 e~i~iGD~~~nDi~~a~~aG~~~i~v~~g~~~~~~~~~~~~~~~~~i~~l~el 266 (271)
T 1vjr_A 214 RMAMVGDRLYTDVKLGKNAGIVSILVLTGETTPEDLERAETKPDFVFKNLGEL 266 (271)
T ss_dssp GEEEEESCHHHHHHHHHHHTCEEEEESSSSCCHHHHHHCSSCCSEEESSHHHH
T ss_pred eEEEECCCcHHHHHHHHHcCCeEEEECCCCCCHHHHhhcCCCCCEEECCHHHH
Confidence 999999995 99999999999999999987 4555654 3899999999887
|
| >3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural genomics, PSI, protein STRU initiative, nysgrc; 2.30A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.7e-16 Score=175.12 Aligned_cols=191 Identities=16% Similarity=0.142 Sum_probs=129.4
Q ss_pred CCCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHH
Q 001380 76 WGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKG-VKGFDSEAAKKRFFEIY 154 (1089)
Q Consensus 76 ~~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 154 (1089)
+...++|+||+||||++. ..+.++++.+|.......+..........+...+..... +.. ...... +.+
T Consensus 104 i~~~~~viFD~DgTLi~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~----~~~ 173 (335)
T 3n28_A 104 LTKPGLIVLDMDSTAIQI-----ECIDEIAKLAGVGEEVAEVTERAMQGELDFEQSLRLRVSKLKD-APEQIL----SQV 173 (335)
T ss_dssp TTSCCEEEECSSCHHHHH-----HHHHHHHHHHTCHHHHHHHHHHHHTTSSCHHHHHHHHHHTTTT-CBTTHH----HHH
T ss_pred ccCCCEEEEcCCCCCcCh-----HHHHHHHHHcCCchHHHHHHHHHhcCCCCHHHHHHHHHHHhcC-CCHHHH----HHH
Confidence 345699999999999983 355566666665433333322211111111111111111 111 111111 111
Q ss_pred HHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEE----------cCCccCCCCC
Q 001380 155 LDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVS----------ADAFENLKPA 224 (1089)
Q Consensus 155 ~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~----------~~~~~~~KP~ 224 (1089)
. .. .+++||+.++|+.|+++|++++|+||+....++.+++++|+. .+|+..+. .+++...||+
T Consensus 174 ~----~~--~~~~pg~~~~l~~L~~~g~~~~ivS~~~~~~~~~~~~~lgl~-~~~~~~l~~~d~~~tg~~~~~~~~~kpk 246 (335)
T 3n28_A 174 R----ET--LPLMPELPELVATLHAFGWKVAIASGGFTYFSDYLKEQLSLD-YAQSNTLEIVSGKLTGQVLGEVVSAQTK 246 (335)
T ss_dssp H----TT--CCCCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCS-EEEEEEEEEETTEEEEEEESCCCCHHHH
T ss_pred H----Hh--CCcCcCHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCC-eEEeeeeEeeCCeeeeeecccccChhhh
Confidence 1 11 268999999999999999999999999999999999999996 77765432 2345667999
Q ss_pred HHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccC
Q 001380 225 PDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 225 ~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el 289 (1089)
+++|+.+++++|+++++|+||||+.+|+.||+++|+.+++ . ..+.++ ..+++++ +..++
T Consensus 247 ~~~~~~~~~~lgi~~~~~v~vGDs~nDi~~a~~aG~~va~--~--~~~~~~-~~a~~v~-~~~~l 305 (335)
T 3n28_A 247 ADILLTLAQQYDVEIHNTVAVGDGANDLVMMAAAGLGVAY--H--AKPKVE-AKAQTAV-RFAGL 305 (335)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSSEEEEE--S--CCHHHH-TTSSEEE-SSSCT
T ss_pred HHHHHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCeEEe--C--CCHHHH-hhCCEEE-ecCCH
Confidence 9999999999999999999999999999999999987665 2 233333 3577777 44454
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-13 Score=154.79 Aligned_cols=265 Identities=15% Similarity=0.230 Sum_probs=163.8
Q ss_pred CCCCCCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeC---CC
Q 001380 594 RLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAK---KN 669 (1089)
Q Consensus 594 ~~~~~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~---g~ 669 (1089)
+.+++.|..|++|++.+ +|+|||++...++|.+++.+ |+. ..+..... -+ ......|.||+++|+ +.
T Consensus 25 ~~va~gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~-~~v~~~~~-v~------~~g~~GllGia~~Pdf~~~g 95 (347)
T 3das_A 25 RTVATGLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRK-TELGEVPG-VS------PSGEGGLLGIALSPDYASDH 95 (347)
T ss_dssp EEEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCE-EEEEECTT-CC------CBTTBSEEEEEECTTHHHHC
T ss_pred EEeecCCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcE-eeecccCc-ee------ecCCCCceeeEeccccccCC
Confidence 35678999999999997 88999999988999999876 543 33322100 00 011347899999984 45
Q ss_pred EEEEEEC--CCCEEEEEECCCC--------eEEEEe-cCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC---
Q 001380 670 LLYVADT--ENHALREIDFVND--------TVRTLA-GNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA--- 735 (1089)
Q Consensus 670 ~lyVaD~--~n~~I~~~d~~~g--------~v~~~a-g~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~--- 735 (1089)
.|||+.+ ..++|.++.++++ ..+++. +... ....+...|+|+|+| .|||+..
T Consensus 96 ~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~-------------~~~H~g~~l~fgpDG-~Lyvt~Gd~~ 161 (347)
T 3das_A 96 MVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPK-------------GVIHNGGRIAFGPDK-MLYAGTGESG 161 (347)
T ss_dssp EEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECC-------------CSSCCCCCEEECTTS-CEEEECBCTT
T ss_pred EEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCC-------------CCCccCccccCCCCC-CEEEEECCCC
Confidence 5999764 4578999987652 122221 1110 112366789999988 8999953
Q ss_pred ----------CCcEEEEEECCCCeEEEEeCCCccccCC-CCCCCCccccCCceEEEcCCCCEEEEEeCCCCe---EEEEE
Q 001380 736 ----------GQHQIWEHSTVDGVTRAFSGDGYERNLN-GSSSLNTSFAQPSGISLSPDFMEIYVADSESSS---IRALN 801 (1089)
Q Consensus 736 ----------~~~~I~~~~~~~g~~~~~~g~g~~~~~~-g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~---I~~~~ 801 (1089)
..++|+++++++.. . ..+.. +......++.+|.||+++++| .||++|.+... |.++.
T Consensus 162 ~~~~~qd~~~~~G~IlRi~~dG~i----p----~~nPf~~~~i~a~G~RNp~Gla~dp~G-~L~~~d~g~~~~deln~i~ 232 (347)
T 3das_A 162 DTGLSQDRKSLGGKILRMTPDGEP----A----PGNPFPGSPVYSYGHRNVQGLAWDDKQ-RLFASEFGQDTWDELNAIK 232 (347)
T ss_dssp CGGGTTCTTCSTTCEEEECTTSSB----C----TTCSSTTCCEEEBCCSBCCEEEECTTC-CEEEEECCSSSCEEEEEEC
T ss_pred CCccccCCCCCCCEEEEEeCCCCc----c----CCCCCCCCeEEeeCCCCcceEEECCCC-CEEEEecCCCCCceeeEEc
Confidence 24678888765431 0 00000 111123567899999999986 99999987643 33332
Q ss_pred cCCCCeEEEecCCCCCCCCccccCCCCCccc---ccc----ccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEe
Q 001380 802 LKTGGSRLLAGGDPIFPDNLFKFGDRDGMGS---EVL----LQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLA 874 (1089)
Q Consensus 802 ~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~---~~~----l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~ 874 (1089)
.|+...++. ..|..+.... ... ...|.|+++. +|.+|+++..+++|.++..+++.. +
T Consensus 233 ---------~G~nyGwP~---~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~--~- 296 (347)
T 3das_A 233 ---------PGDNYGWPE---AEGKGGGSGFHDPVAQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAA--A- 296 (347)
T ss_dssp ---------TTCBCCTTT---CCSSCCCTTCCCCSEEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEE--S-
T ss_pred ---------CCCEecCCc---ccCCCCCccccCCcEecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCce--e-
Confidence 222222221 1111111000 001 1358899997 689999999999999987654421 0
Q ss_pred ccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCC
Q 001380 875 GIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNN 912 (1089)
Q Consensus 875 g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n 912 (1089)
+. ...+ ....+.+|.+|+++++|.|||++.+.
T Consensus 297 ~~-~e~~-----l~~~~gR~~dv~~~pDG~lyv~td~~ 328 (347)
T 3das_A 297 AD-PQAF-----LEGEYGRLRTVAPAGGDKLWLVTSNT 328 (347)
T ss_dssp SC-CEEE-----STTTSSCEEEEEEEETTEEEEEECTT
T ss_pred cc-eEEe-----ecCCCCCccEEEECCCCcEEEEEcCC
Confidence 00 0000 11145689999999999999997643
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.60 E-value=8e-14 Score=157.36 Aligned_cols=213 Identities=8% Similarity=0.131 Sum_probs=158.6
Q ss_pred CCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC
Q 001380 657 NRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG 736 (1089)
Q Consensus 657 ~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~ 736 (1089)
..|.+++++++|+ ||++++.++.|+++|++++.+..+.... -..|.+++++++| .+|++..+
T Consensus 45 ~~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~----------------~~~~~~i~~~~dg-~l~v~~~~ 106 (333)
T 2dg1_A 45 LQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRPFVSH----------------KANPAAIKIHKDG-RLFVCYLG 106 (333)
T ss_dssp CCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECS----------------SSSEEEEEECTTS-CEEEEECT
T ss_pred ccccCcEECCCCC-EEEEECCCCEEEEEeCCCCcEEEEeeCC----------------CCCcceEEECCCC-cEEEEeCC
Confidence 4689999999998 9999999999999999988877764211 1378999999987 79999877
Q ss_pred C----cEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCC------CCeEEEEEcCCCC
Q 001380 737 Q----HQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSE------SSSIRALNLKTGG 806 (1089)
Q Consensus 737 ~----~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~------~~~I~~~~~~~~~ 806 (1089)
. +.|+++|+.++....+.... .....|.+|+++++| ++|+++.. .+.|++++++++.
T Consensus 107 ~~~~~~~i~~~d~~~~~~~~~~~~~------------~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~ 173 (333)
T 2dg1_A 107 DFKSTGGIFAATENGDNLQDIIEDL------------STAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRT 173 (333)
T ss_dssp TSSSCCEEEEECTTSCSCEEEECSS------------SSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCC
T ss_pred CCCCCceEEEEeCCCCEEEEEEccC------------ccCCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCE
Confidence 6 79999999888766443211 012368899999998 89999875 4689999887655
Q ss_pred eEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEEEeCCCCEEEEEeCC--CCeEEEEeccCCCCCCC
Q 001380 807 SRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADSYNHKIKKLDPA--SNRVSTLAGIGKAGFKD 883 (1089)
Q Consensus 807 ~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~~n~~I~~~d~~--~~~v~t~~g~g~~g~~~ 883 (1089)
...+.. .+..|.+++++++|+ +||+++.+++|.++|.+ ++.+..+.......+
T Consensus 174 ~~~~~~----------------------~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~-- 229 (333)
T 2dg1_A 174 VTPIIQ----------------------NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYF-- 229 (333)
T ss_dssp EEEEEE----------------------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEEC--
T ss_pred EEEeec----------------------CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEec--
Confidence 544321 134689999999996 99999999999999984 334443321000000
Q ss_pred CcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCCCceEEEEe
Q 001380 884 GAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKEEPELQTLE 931 (1089)
Q Consensus 884 g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~~~~~~~l~ 931 (1089)
.....|.+|++|++|+|||++..+++|.++++++. .+.++.
T Consensus 230 -----~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~--~~~~~~ 270 (333)
T 2dg1_A 230 -----TGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGY--PIGQIL 270 (333)
T ss_dssp -----CSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSC--EEEEEE
T ss_pred -----CCCCCCCceEECCCCCEEEEEcCCCEEEEECCCCC--EEEEEE
Confidence 01246899999999999999998999999999765 455554
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=8.3e-13 Score=148.72 Aligned_cols=258 Identities=13% Similarity=0.140 Sum_probs=176.1
Q ss_pred CCCceEEEeecCCeEEEEeCCCCEEEEEeCC---CCEE--EEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEE
Q 001380 601 KFPGKLAIDILNNRLFISDSNHNRIVVTDLD---GNFI--VQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVAD 675 (1089)
Q Consensus 601 ~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~---g~~~--~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD 675 (1089)
..|..+++++.+..||+++...++|.+++.+ |+.. ..+... ..|.+++++++|+.||+++
T Consensus 38 ~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~s~dg~~l~~~~ 102 (343)
T 1ri6_A 38 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP---------------GSLTHISTDHQGQFVFVGS 102 (343)
T ss_dssp SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS---------------SCCSEEEECTTSSEEEEEE
T ss_pred CCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC---------------CCCcEEEEcCCCCEEEEEe
Confidence 3577899998666799999887899988765 3432 222221 1689999999999999999
Q ss_pred CCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCC-CeEEEEe
Q 001380 676 TENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVD-GVTRAFS 754 (1089)
Q Consensus 676 ~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~-g~~~~~~ 754 (1089)
..++.|..+++.++........-. ....|.+++++|+|+.+|+++.+.+.|+.|+..+ +.+....
T Consensus 103 ~~~~~i~~~d~~~~~~~~~~~~~~--------------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~ 168 (343)
T 1ri6_A 103 YNAGNVSVTRLEDGLPVGVVDVVE--------------GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQD 168 (343)
T ss_dssp TTTTEEEEEEEETTEEEEEEEEEC--------------CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEE
T ss_pred cCCCeEEEEECCCCcccccccccc--------------CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeec
Confidence 888999999984332211111000 0125889999999999999998889999999876 6554322
Q ss_pred CCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCC--CCeEEEecCCCCCCCCccccCCCCCccc
Q 001380 755 GDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKT--GGSRLLAGGDPIFPDNLFKFGDRDGMGS 832 (1089)
Q Consensus 755 g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~--~~~~~~~g~~~~~~~~l~~~g~~dg~~~ 832 (1089)
.... . ...-..|.+++++++|+.||+++...+.|..++.+. +.......... ...+
T Consensus 169 ~~~~-~--------~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~------~~~~------- 226 (343)
T 1ri6_A 169 PAEV-T--------TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDM------MPEN------- 226 (343)
T ss_dssp EEEE-E--------CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEEC------SCTT-------
T ss_pred cccc-c--------cCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccc------cCcc-------
Confidence 0000 0 001135789999999988999999999999999853 33321110000 0000
Q ss_pred cccccCceEEEEccCC-cEEEEeCCCCEEEEEeCC--CCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEEE
Q 001380 833 EVLLQHPLGVYCAKNG-QIYVADSYNHKIKKLDPA--SNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIA 908 (1089)
Q Consensus 833 ~~~l~~P~gva~~~~G-~lyVaD~~n~~I~~~d~~--~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVa 908 (1089)
......|.+++++++| .+|+++..++.|.++|.. ++....+.... .-..|.+++++++|+ ||++
T Consensus 227 ~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~------------~~~~~~~~~~s~dg~~l~~~ 294 (343)
T 1ri6_A 227 FSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP------------TETQPRGFNVDHSGKYLIAA 294 (343)
T ss_dssp CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE------------CSSSCCCEEECTTSSEEEEE
T ss_pred ccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec------------CCCccceEEECCCCCEEEEe
Confidence 0012367889999999 588899889999999876 55444443211 012389999999986 8999
Q ss_pred ECCCCEEEEEeCC
Q 001380 909 DTNNNIIRYLDLN 921 (1089)
Q Consensus 909 d~~n~~I~~~~~~ 921 (1089)
+..++.|.+++++
T Consensus 295 ~~~~~~v~v~~~d 307 (343)
T 1ri6_A 295 GQKSHHISVYEIV 307 (343)
T ss_dssp CTTTCEEEEEEEE
T ss_pred cCCCCeEEEEEEc
Confidence 8888999988554
|
| >2b82_A APHA, class B acid phosphatase; DDDD acid phosphatase, metallo-ENZ hydrolase; HET: ADN; 1.25A {Escherichia coli} SCOP: c.108.1.12 PDB: 2b8j_A* 2hf7_A 1rmt_A* 1n9k_A 1rmq_A 1n8n_A* 1rmy_A* 2g1a_A* 3cz4_A 2heg_A* 1z5g_A 1z5u_A* 1z88_A 2aut_A | Back alignment and structure |
|---|
Probab=99.58 E-value=3.1e-16 Score=164.91 Aligned_cols=98 Identities=18% Similarity=0.157 Sum_probs=81.2
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEc-C--CccCCCCCHHHHHHHHHHcCCCCCc
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSA-D--AFENLKPAPDIFLSASKILNVPTSE 241 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~-~--~~~~~KP~~~~~~~~l~~lgv~p~~ 241 (1089)
.+.||+.++|+.|+++|++++|+||+.....+..++. +. .+|+.++.+ + .....||+|++|.++++++|+
T Consensus 88 ~~~~~~~e~l~~L~~~G~~l~ivTn~~~~~~~~~l~~--l~-~~f~~i~~~~~~~~~~~~KP~p~~~~~~~~~~g~---- 160 (211)
T 2b82_A 88 IPKEVARQLIDMHVRRGDAIFFVTGRSPTKTETVSKT--LA-DNFHIPATNMNPVIFAGDKPGQNTKSQWLQDKNI---- 160 (211)
T ss_dssp EECHHHHHHHHHHHHHTCEEEEEECSCCCSSCCHHHH--HH-HHTTCCTTTBCCCEECCCCTTCCCSHHHHHHTTE----
T ss_pred CCcHHHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHH--HH-HhcCccccccchhhhcCCCCCHHHHHHHHHHCCC----
Confidence 3578999999999999999999999876665555555 32 455554322 1 245589999999999999998
Q ss_pred EEEEcCChhhHHHHHHcCCeEEEEcCCC
Q 001380 242 CIVIEDALAGVQAAKAAQMRCIAVTTTL 269 (1089)
Q Consensus 242 ~v~VGD~~~Di~aA~~aG~~~i~V~~g~ 269 (1089)
|+||||+.+|+++|+++||++++|.++.
T Consensus 161 ~l~VGDs~~Di~aA~~aG~~~i~v~~g~ 188 (211)
T 2b82_A 161 RIFYGDSDNDITAARDVGARGIRILRAS 188 (211)
T ss_dssp EEEEESSHHHHHHHHHTTCEEEECCCCT
T ss_pred EEEEECCHHHHHHHHHCCCeEEEEecCC
Confidence 9999999999999999999999999875
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-13 Score=154.62 Aligned_cols=208 Identities=13% Similarity=0.179 Sum_probs=154.6
Q ss_pred cCCcceeEEeeCCCEEEEE-------ECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCC
Q 001380 656 FNRPQGLAYNAKKNLLYVA-------DTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINE 728 (1089)
Q Consensus 656 f~~P~gla~d~~g~~lyVa-------D~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~ 728 (1089)
+..|.+++++++|+ +|++ |+.++.|+++++.++.+..+...... .....|.+++++++++
T Consensus 17 ~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~------------~~~~~~~~i~~~~~~g 83 (314)
T 1pjx_A 17 IPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVN------------GYGGIPAGCQCDRDAN 83 (314)
T ss_dssp CTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEECCEET------------TEECCEEEEEECSSSS
T ss_pred CCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccC------------CCCCCCceEEEecCCC
Confidence 66899999999887 9999 88889999999888888776531000 0124799999999844
Q ss_pred EEEEEECCCcEEEEEECCCCeEEEE-eCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCC-------------
Q 001380 729 KVYIAMAGQHQIWEHSTVDGVTRAF-SGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSES------------- 794 (1089)
Q Consensus 729 ~lyvad~~~~~I~~~~~~~g~~~~~-~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~------------- 794 (1089)
.|||++.++ .|+++|.. +.+..+ .... .......|++|+++++| ++|+++...
T Consensus 84 ~l~v~~~~~-~l~~~d~~-g~~~~~~~~~~----------~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~ 150 (314)
T 1pjx_A 84 QLFVADMRL-GLLVVQTD-GTFEEIAKKDS----------EGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQE 150 (314)
T ss_dssp EEEEEETTT-EEEEEETT-SCEEECCSBCT----------TSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSS
T ss_pred cEEEEECCC-CEEEEeCC-CCEEEEEeccC----------CCccccCCcCEEECCCC-CEEEEecCcccccccccccccC
Confidence 999999754 89999998 776655 3211 01234579999999998 899999865
Q ss_pred --CeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEc----cCC-cEEEEeCCCCEEEEEeCC-
Q 001380 795 --SSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCA----KNG-QIYVADSYNHKIKKLDPA- 866 (1089)
Q Consensus 795 --~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~----~~G-~lyVaD~~n~~I~~~d~~- 866 (1089)
+.|.+++++ +....+.. .+..|.+++++ ++| .+||+++.+++|.++|.+
T Consensus 151 ~~~~l~~~~~~-g~~~~~~~----------------------~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~ 207 (314)
T 1pjx_A 151 KFGSIYCFTTD-GQMIQVDT----------------------AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG 207 (314)
T ss_dssp SCEEEEEECTT-SCEEEEEE----------------------EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE
T ss_pred CCCeEEEECCC-CCEEEecc----------------------CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCC
Confidence 689999876 44433321 14468999999 999 699999999999999875
Q ss_pred CCeEE---EEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCC
Q 001380 867 SNRVS---TLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNK 922 (1089)
Q Consensus 867 ~~~v~---t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~ 922 (1089)
++.+. .+..... ..+..|.+|++|++|+|||++..++.|.++++++
T Consensus 208 ~g~~~~~~~~~~~~~----------~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~ 256 (314)
T 1pjx_A 208 PAKIENKKVWGHIPG----------THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG 256 (314)
T ss_dssp TTEEEEEEEEEECCC----------CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC
T ss_pred CCccccceEEEECCC----------CCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCC
Confidence 45432 2221100 0114589999999999999998899999999983
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.9e-13 Score=144.83 Aligned_cols=210 Identities=13% Similarity=0.082 Sum_probs=150.5
Q ss_pred CcceeEEeeCCCEEEEEEC--CCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC
Q 001380 658 RPQGLAYNAKKNLLYVADT--ENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA 735 (1089)
Q Consensus 658 ~P~gla~d~~g~~lyVaD~--~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~ 735 (1089)
.|+||+++++| .||++.. +.+.|+++|+.++++..-...+. -..+.|++++ ++.||++.+
T Consensus 22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~---------------~~fgeGi~~~--g~~lyv~t~ 83 (266)
T 2iwa_A 22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDD---------------SYFGEGLTLL--NEKLYQVVW 83 (266)
T ss_dssp CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCT---------------TCCEEEEEEE--TTEEEEEET
T ss_pred CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCC---------------CcceEEEEEe--CCEEEEEEe
Confidence 68999999886 5999975 47899999999887666543221 1244577776 579999999
Q ss_pred CCcEEEEEECCCCeEE-EEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeE-EEecC
Q 001380 736 GQHQIWEHSTVDGVTR-AFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR-LLAGG 813 (1089)
Q Consensus 736 ~~~~I~~~~~~~g~~~-~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~-~~~g~ 813 (1089)
..+.++++|..+.++. .+. . . .|.|..+++||+++|+++ ++++|..+++.+..+. .+.-+
T Consensus 84 ~~~~v~viD~~t~~v~~~i~-~--------------g--~~~g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg 145 (266)
T 2iwa_A 84 LKNIGFIYDRRTLSNIKNFT-H--------------Q--MKDGWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVK 145 (266)
T ss_dssp TCSEEEEEETTTTEEEEEEE-C--------------C--SSSCCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECE
T ss_pred cCCEEEEEECCCCcEEEEEE-C--------------C--CCCeEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEEC
Confidence 9999999999887654 343 1 1 244555667788999999 7899999999876643 22211
Q ss_pred CCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCC--ccccccc
Q 001380 814 DPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDG--AALAAQL 891 (1089)
Q Consensus 814 ~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g--~~~~~~l 891 (1089)
.. ...+..|.++.+. +|.+|++....+.|.+||++++.+......+. .... .......
T Consensus 146 ------------~~-----~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g--~~~~~~~~~~~~~ 205 (266)
T 2iwa_A 146 ------------YN-----GHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPN--LRKKLIDEGFRDI 205 (266)
T ss_dssp ------------ET-----TEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHH--HHHHHHHTTCTTC
T ss_pred ------------CC-----CcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCC--ccccccccccccc
Confidence 00 0124468888887 88999999999999999999887755443210 0000 0001123
Q ss_pred CCCceEEEccCC-cEEEEECCCCEEEEEeCCCC
Q 001380 892 SEPAGIIEAQNG-NLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 892 ~~P~gi~vd~~G-~lyVad~~n~~I~~~~~~~~ 923 (1089)
..|+||+++++| ++||+....++|..+++...
T Consensus 206 ~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 206 DVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp CCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred CceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 578999999877 69999999999999987554
|
| >4ap9_A Phosphoserine phosphatase; hydrolase, haloacid dehalogenase superfamily, NDSB; HET: 1PS; 1.78A {Thermococcus onnurineus} PDB: 4b6j_A | Back alignment and structure |
|---|
Probab=99.57 E-value=5.5e-16 Score=161.29 Aligned_cols=119 Identities=19% Similarity=0.183 Sum_probs=96.5
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCc-cCCCCCHHHHHHHHHHcCCCCCcEE
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAF-ENLKPAPDIFLSASKILNVPTSECI 243 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~-~~~KP~~~~~~~~l~~lgv~p~~~v 243 (1089)
.++||+.++|+.|+++|++++|+||+....++.. +.+|+. .+++.+...+.. ...+|.+.....+++++ ++++|+
T Consensus 79 ~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~k~~~l~~l--~~~~~i 154 (201)
T 4ap9_A 79 NVSPEARELVETLREKGFKVVLISGSFEEVLEPF-KELGDE-FMANRAIFEDGKFQGIRLRFRDKGEFLKRF--RDGFIL 154 (201)
T ss_dssp CCCHHHHHHHHHHHHTTCEEEEEEEEETTTSGGG-TTTSSE-EEEEEEEEETTEEEEEECCSSCHHHHHGGG--TTSCEE
T ss_pred CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHH-HHcCch-hheeeEEeeCCceECCcCCccCHHHHHHhc--CcCcEE
Confidence 7899999999999999999999999988888888 999996 666666655432 22456665667788888 889999
Q ss_pred EEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhc
Q 001380 244 VIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTG 297 (1089)
Q Consensus 244 ~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~ 297 (1089)
+|||+.+|+.+|+.+|+. +++..+.. .+++++.++.++ .++|..
T Consensus 155 ~iGD~~~Di~~~~~ag~~-v~~~~~~~-------~ad~v~~~~~el--~~~l~~ 198 (201)
T 4ap9_A 155 AMGDGYADAKMFERADMG-IAVGREIP-------GADLLVKDLKEL--VDFIKN 198 (201)
T ss_dssp EEECTTCCHHHHHHCSEE-EEESSCCT-------TCSEEESSHHHH--HHHHHT
T ss_pred EEeCCHHHHHHHHhCCce-EEECCCCc-------cccEEEccHHHH--HHHHHH
Confidence 999999999999999996 55655422 789999999886 666654
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-12 Score=148.35 Aligned_cols=235 Identities=21% Similarity=0.344 Sum_probs=182.5
Q ss_pred CeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeE
Q 001380 613 NRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTV 691 (1089)
Q Consensus 613 g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v 691 (1089)
+.+|++....+.|.+++.+ |+.+..+... ..|.+++++++|+.||++...++.|+.+|+.++.+
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~---------------~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~ 66 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTATIPVG---------------SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV 66 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECS---------------SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEEeecC---------------CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeE
Confidence 5789999999999999987 6666665443 14789999999998999988889999999988776
Q ss_pred EEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCcc
Q 001380 692 RTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTS 771 (1089)
Q Consensus 692 ~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~ 771 (1089)
......+ ..+.+++++|+++.||++....+.|+.||..++........+
T Consensus 67 ~~~~~~~-----------------~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-------------- 115 (391)
T 1l0q_A 67 IATVPAG-----------------SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-------------- 115 (391)
T ss_dssp EEEEECS-----------------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS--------------
T ss_pred EEEEECC-----------------CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC--------------
Confidence 5554222 167899999999999999988899999999988765443211
Q ss_pred ccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCC-cE
Q 001380 772 FAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNG-QI 850 (1089)
Q Consensus 772 ~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G-~l 850 (1089)
..+.+++++++|+.||++....+.|+.++..++........ -..|.+++++++| .+
T Consensus 116 -~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~----------------------~~~~~~~~~~~dg~~l 172 (391)
T 1l0q_A 116 -KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV----------------------GRSPKGIAVTPDGTKV 172 (391)
T ss_dssp -SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC----------------------CSSEEEEEECTTSSEE
T ss_pred -CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec----------------------CCCcceEEECCCCCEE
Confidence 24789999999989999999999999999887654332211 1247889999998 47
Q ss_pred EEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEEEEC--CCCEEEEEeCCCCCceE
Q 001380 851 YVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADT--NNNIIRYLDLNKEEPEL 927 (1089)
Q Consensus 851 yVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~--~n~~I~~~~~~~~~~~~ 927 (1089)
|++...++.|+.+|..++.+...... -..|.+++++++|+ ||++.. .++.|.++++.+. ..+
T Consensus 173 ~~~~~~~~~v~~~d~~~~~~~~~~~~--------------~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~-~~~ 237 (391)
T 1l0q_A 173 YVANFDSMSISVIDTVTNSVIDTVKV--------------EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN-KIT 237 (391)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEEC--------------SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT-EEE
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEec--------------CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC-eEE
Confidence 89999999999999988876554432 13478899999885 787776 7899999999876 234
Q ss_pred EEEe
Q 001380 928 QTLE 931 (1089)
Q Consensus 928 ~~l~ 931 (1089)
..+.
T Consensus 238 ~~~~ 241 (391)
T 1l0q_A 238 ARIP 241 (391)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4443
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.7e-13 Score=154.73 Aligned_cols=265 Identities=14% Similarity=0.102 Sum_probs=165.5
Q ss_pred CCeEEEEeCCC----CEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC---------C
Q 001380 612 NNRLFISDSNH----NRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT---------E 677 (1089)
Q Consensus 612 ~g~L~vsd~~~----~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~---------~ 677 (1089)
..++||++.+. ++|.++|.+ ++++.+|..+ ..| ||+++|+|+++||+++ .
T Consensus 84 ~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG---------------~~P-gia~SpDgk~lyVan~~~~~~~~G~~ 147 (426)
T 3c75_H 84 ARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGG---------------FLP-HPVAAEDGSFFAQASTVFERIARGKR 147 (426)
T ss_dssp TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC---------------SSC-EEEECTTSSCEEEEEEEEEETTEEEE
T ss_pred CCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECC---------------CCC-ceEECCCCCEEEEEeccccccccCCC
Confidence 57899999865 899999987 6677777654 268 9999999999999986 3
Q ss_pred CCEEEEEECCCCeEE-EEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC-CcEEEEEECCCCeEE-EEe
Q 001380 678 NHALREIDFVNDTVR-TLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG-QHQIWEHSTVDGVTR-AFS 754 (1089)
Q Consensus 678 n~~I~~~d~~~g~v~-~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~-~~~I~~~~~~~g~~~-~~~ 754 (1089)
.+.|.+||..++++. ++.-.+... ......|++++++|+|+++||++.. .+.|..+|..++++. .+.
T Consensus 148 ~~~VsviD~~t~~vv~~I~v~g~~r----------~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 148 TDYVEVFDPVTFLPIADIELPDAPR----------FLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp EEEEEEECTTTCCEEEEEEETTCCC----------CCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEECCCCcEEEEEECCCccc----------cccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 568999999887654 443111100 0012479999999999999999975 789999999987654 332
Q ss_pred CCCcc------------ccCCCCC-------CCC-----ccc---cCCc--eEEEcCCCCEEEEEeCCCCeEEEEEcCCC
Q 001380 755 GDGYE------------RNLNGSS-------SLN-----TSF---AQPS--GISLSPDFMEIYVADSESSSIRALNLKTG 805 (1089)
Q Consensus 755 g~g~~------------~~~~g~~-------~~~-----~~~---~~P~--glav~~~g~~lyvad~~~~~I~~~~~~~~ 805 (1089)
-.+.. ...+|.. ... ..+ ..|. .++++++++.+|+... .++|.+++..++
T Consensus 218 v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~-~g~V~ViD~~~~ 296 (426)
T 3c75_H 218 VPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY-TGKIFQADLTAE 296 (426)
T ss_dssp CCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT-TSEEEEEEECSS
T ss_pred cCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC-CCcEEEEeccCC
Confidence 11100 0000000 000 000 1121 2234555555555543 356666665544
Q ss_pred CeEEEecCCCCCCCCccccCCCCCccccccccCceE---EEEccCC-cEEEEeC---------CCCEEEEEeCCCCeEEE
Q 001380 806 GSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLG---VYCAKNG-QIYVADS---------YNHKIKKLDPASNRVST 872 (1089)
Q Consensus 806 ~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~g---va~~~~G-~lyVaD~---------~n~~I~~~d~~~~~v~t 872 (1089)
.+..+.. +........ ..-..|.| ++++++| ++||++. ..+.|.+||.+++++..
T Consensus 297 ~~~v~~~---------~~~~~~~~i---~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~ 364 (426)
T 3c75_H 297 GATFRAP---------IEALTEAER---ADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERIN 364 (426)
T ss_dssp CEEECCC---------EESSCTTTG---GGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE
T ss_pred ceEEeee---------eeecccccc---ccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEE
Confidence 3322110 000000000 00112444 7889886 6999974 23579999998876644
Q ss_pred EeccCCCCCCCCcccccccCCCceEEEccCCc--EEEEECCCCEEEEEeCCCCCceEEEE
Q 001380 873 LAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN--LFIADTNNNIIRYLDLNKEEPELQTL 930 (1089)
Q Consensus 873 ~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~--lyVad~~n~~I~~~~~~~~~~~~~~l 930 (1089)
-...+ ..|.+|+++++|+ +|+++..++.|.+||..+. ..+.++
T Consensus 365 ~I~vg--------------~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~-kvv~tI 409 (426)
T 3c75_H 365 KIELG--------------HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATG-EELRSV 409 (426)
T ss_dssp EEEEE--------------EEECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEEE
T ss_pred EEECC--------------CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC-CEEEEe
Confidence 32221 2499999999986 8999989999999999987 345565
|
| >2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.8e-15 Score=146.96 Aligned_cols=123 Identities=14% Similarity=0.147 Sum_probs=107.9
Q ss_pred cCCCCCCCCCCccccCCCCC--ceeecccc-cCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEE-EEEEeCCCC
Q 001380 423 NRKTTPIVPEFPAKLDWLNT--APLQFRRD-LKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFT-VVGVHSAKF 497 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g--~~~~l~~~-~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~-vi~v~~~~~ 497 (1089)
..++|+++|+|++. . +| ++++| ++ ++||++||+|| ..|||.|..|++.+++.+++|++.|+. |++||.
T Consensus 13 ~~~vGd~aPdf~l~-~--~g~~~~v~L-~d~~~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~gv~~VigIS~--- 85 (171)
T 2xhf_A 13 PIKVGDIIPDVLVY-E--DVPSKSFPI-HDVFRGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEEGYHTIACIAV--- 85 (171)
T ss_dssp CCCTTCBCCCCEEE-C--SSTTCEEET-HHHHTTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHTTCCEEEEEES---
T ss_pred cccCcCCCCCeEEe-c--CCCCcEEEh-HHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCCEEEEEeC---
Confidence 45799999999976 2 44 79999 77 59999999998 789999999999999999999988995 999986
Q ss_pred CChhcHHHHHHHHHHcCC--ccceeecCChhHHHHhCCC-----------ceeEEEEECCCCcEEEEecCCC
Q 001380 498 DNEKDLEAIRNAVLRYGI--SHPVVNDGDMNLWRELGVN-----------SWPTFAVVGPNGKLLAQLAGEG 556 (1089)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~--~~~v~~d~~~~l~~~~~v~-----------~~Pt~~lid~~G~i~~~~~G~~ 556 (1089)
+++...++|.+++++ +|+++.|.+.+++++||+. ....+|||| +|+|++.+....
T Consensus 86 ---D~~~~~~~w~~~~~~~~~f~lLSD~~~~~a~ayGv~~~~~~~g~g~~~~R~tfvId-dG~V~~~~v~~~ 153 (171)
T 2xhf_A 86 ---NDPFVMAAWGKTVDPEHKIRMLADMHGEFTRALGTELDSSKMLGNNRSRRYAMLID-DNKIRSVSTEPD 153 (171)
T ss_dssp ---SCHHHHHHHHHHHCTTCCSEEEECTTSHHHHHHTCBCCCHHHHSSCCBCCEEEEEE-TTEEEEEEETTS
T ss_pred ---CCHHHHHHHHHhcCCCCCeEEEEeCCchHHHHhCCceeccccCCCcceEEEEEEEe-CCEEEEEEEeCC
Confidence 788888999999999 8999999999999999983 357899998 999999977543
|
| >2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-15 Score=154.10 Aligned_cols=117 Identities=14% Similarity=0.129 Sum_probs=95.5
Q ss_pred CCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEE
Q 001380 166 GFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVI 245 (1089)
Q Consensus 166 ~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~V 245 (1089)
+.|+..++|+.|+++|++++|+||+....++..++++|+. .+|+. .||++++|+.+++++++++++++||
T Consensus 37 ~~~~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~-~~~~~---------~kp~~~~~~~~~~~~~~~~~~~~~v 106 (162)
T 2p9j_A 37 FNVLDGIGIKLLQKMGITLAVISGRDSAPLITRLKELGVE-EIYTG---------SYKKLEIYEKIKEKYSLKDEEIGFI 106 (162)
T ss_dssp EEHHHHHHHHHHHTTTCEEEEEESCCCHHHHHHHHHTTCC-EEEEC---------C--CHHHHHHHHHHTTCCGGGEEEE
T ss_pred ecccHHHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCH-hhccC---------CCCCHHHHHHHHHHcCCCHHHEEEE
Confidence 3466789999999999999999999999999999999996 65542 7999999999999999999999999
Q ss_pred cCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHH-HHHh
Q 001380 246 EDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLN-DILT 296 (1089)
Q Consensus 246 GD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~-~ll~ 296 (1089)
||+.+|+.+|+++|+.+++. .+ .+.+.. .+++++.++.+-.+. .++.
T Consensus 107 GD~~~Di~~a~~ag~~~~~~-~~--~~~~~~-~a~~v~~~~~~~g~~~~~~~ 154 (162)
T 2p9j_A 107 GDDVVDIEVMKKVGFPVAVR-NA--VEEVRK-VAVYITQRNGGEGALREVAE 154 (162)
T ss_dssp ECSGGGHHHHHHSSEEEECT-TS--CHHHHH-HCSEECSSCSSSSHHHHHHH
T ss_pred CCCHHHHHHHHHCCCeEEec-Cc--cHHHHh-hCCEEecCCCCCcHHHHHHH
Confidence 99999999999999986643 32 233333 589999999886543 4443
|
| >3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-15 Score=166.11 Aligned_cols=81 Identities=22% Similarity=0.335 Sum_probs=71.1
Q ss_pred ccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCC-hhhHHHHHHcCCeEEEEcCCC-CHHHHhhc--CCcEEec
Q 001380 209 FDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDA-LAGVQAAKAAQMRCIAVTTTL-SEERLKEA--SPSLIRK 284 (1089)
Q Consensus 209 fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~-~~Di~aA~~aG~~~i~V~~g~-~~~~l~~~--~~d~vi~ 284 (1089)
|+.+++.+....+||++.+|+.+++++|+++++++||||+ .+|+.+|+++|+++++|.+|. ..+++... .||++++
T Consensus 169 ~~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~vGD~~~~Di~~a~~aG~~~~~v~~g~~~~~~~~~~~~~pd~~~~ 248 (264)
T 3epr_A 169 LEAATRIKPVFIGKPNAIIMNKALEILNIPRNQAVMVGDNYLTDIMAGINNDIDTLLVTTGFTTVEEVPDLPIQPSYVLA 248 (264)
T ss_dssp HHHHHSCCCEECSTTSHHHHHHHHHHHTSCGGGEEEEESCTTTHHHHHHHHTCEEEEETTSSSCGGGGGGCSSCCSEEES
T ss_pred HHHHhCCCcccCCCCCHHHHHHHHHHhCcCcccEEEECCCcHHHHHHHHHCCCeEEEECCCCCChHHHHhcCCCCCEEEC
Confidence 3444556677789999999999999999999999999999 599999999999999999997 55666654 8999999
Q ss_pred CcccC
Q 001380 285 EIGSV 289 (1089)
Q Consensus 285 dl~el 289 (1089)
++.+|
T Consensus 249 ~l~~l 253 (264)
T 3epr_A 249 SLDEW 253 (264)
T ss_dssp CGGGC
T ss_pred CHHHH
Confidence 99998
|
| >2x4d_A HLHPP, phospholysine phosphohistidine inorganic pyrophos phosphatase; hydrolase; 1.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.1e-16 Score=170.64 Aligned_cols=210 Identities=18% Similarity=0.181 Sum_probs=123.1
Q ss_pred CCCceEEEEecCCcccCCc-------hHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHH---H
Q 001380 76 WGKVSAVLFDMDGVLCNSE-------EPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSE---A 145 (1089)
Q Consensus 76 ~~~~k~ViFD~DGTL~d~~-------~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 145 (1089)
++++|+|+||+||||++++ .....+ .+.+++.|+.+. ..+...++....+...+.. .++.. ... .
T Consensus 9 m~~~k~i~fDlDGTLl~s~~~~~~~~~~~~~a-~~~l~~~G~~~~--~~t~~~gr~~~~~~~~l~~-~g~~~-~~~~~~~ 83 (271)
T 2x4d_A 9 LAGVRGVLLDISGVLYDSGAGGGTAIAGSVEA-VARLKRSRLKVR--FCTNESAASRAELVGQLQR-LGFDI-SEQEVTA 83 (271)
T ss_dssp TTTCCEEEECCBTTTEECCTTTCEECTTHHHH-HHHHHHSSSEEE--EECCCCSSCHHHHHHHHHH-TTCCC-CGGGEEC
T ss_pred HhcCCEEEEeCCCeEEecCCCCCccCcCHHHH-HHHHHHCCCcEE--EEECCCCCCHHHHHHHHHH-CCCCC-CHHHeec
Confidence 3458999999999999963 222222 455677787643 3344556776666665554 34322 111 0
Q ss_pred HHHHHHHHHHHHhcCCCCCCC-----------------------------CccHHHHHHHHHhC-CCeEEEEcCCChHhH
Q 001380 146 AKKRFFEIYLDKYAKPNSGIG-----------------------------FPGALELINQCKSK-GLKVAVASSADRIKV 195 (1089)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~-----------------------------~pG~~~lL~~Lk~~-Gi~vaIvSn~~~~~~ 195 (1089)
........+...... ..... ++++.++++.|++. |+++ ++++......
T Consensus 84 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-i~~~~~~~~~ 161 (271)
T 2x4d_A 84 PAPAACQILKERGLR-PYLLIHDGVRSEFDQIDTSNPNCVVIADAGESFSYQNMNNAFQVLMELEKPVL-ISLGKGRYYA 161 (271)
T ss_dssp HHHHHHHHHHHHTCC-EEEECCGGGGGGGTTSCCSSCSEEEECCCGGGCCHHHHHHHHHHHHHCSSCCE-EEECCCSEEE
T ss_pred HHHHHHHHHHHcCCE-EEEEeCHHHHHHHHHcCCCCCCEEEEecCCCCcCHHHHHHHHHHHHhcCCCeE-EEEcCCcccc
Confidence 011111111111100 00122 33455555555554 5555 4444322111
Q ss_pred HHHHHHCCCCCCCcc---EEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCCh-hhHHHHHHcCCeEEEEcCCC-C
Q 001380 196 DANLAAAGLPVSMFD---AIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDAL-AGVQAAKAAQMRCIAVTTTL-S 270 (1089)
Q Consensus 196 ~~~l~~~gl~~~~fd---~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~-~ 270 (1089)
...+...++. .+++ .+.+.+....+||++.+|+.+++++|+++++|++|||+. +|+.+|+.+|+.+++|.+|. .
T Consensus 162 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~kpk~~~~~~~~~~lgi~~~~~i~iGD~~~nDi~~a~~aG~~~~~v~~g~~~ 240 (271)
T 2x4d_A 162 ATSGLMLDVG-PYMKALEYACGIKAEVVGKPSPEFFKSALQAIGVEAHQAVMIGDDIVGDVGGAQRCGMRALQVRTGKFR 240 (271)
T ss_dssp ETTEEEECHH-HHHHHHHHHHTCCCEEESTTCHHHHHHHHHHHTCCGGGEEEEESCTTTTHHHHHHTTCEEEEESSTTCC
T ss_pred cCCCcccChh-HHHHHHHHHhCCceeeccCCCHHHHHHHHHHhCCCcceEEEECCCcHHHHHHHHHCCCcEEEEcCCCCC
Confidence 1111111111 1111 122334466789999999999999999999999999999 99999999999999999985 3
Q ss_pred HHHHh--hcCCcEEecCcccCCHHHHH
Q 001380 271 EERLK--EASPSLIRKEIGSVSLNDIL 295 (1089)
Q Consensus 271 ~~~l~--~~~~d~vi~dl~el~i~~ll 295 (1089)
..+.. ...|++++.++.++ .++|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~el--~~~l 265 (271)
T 2x4d_A 241 PSDEHHPEVKADGYVDNLAEA--VDLL 265 (271)
T ss_dssp GGGGGCSSCCCSEEESSHHHH--HHHH
T ss_pred chhhcccCCCCCEEeCCHHHH--HHHH
Confidence 33322 35799999999888 4454
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.2e-12 Score=149.63 Aligned_cols=238 Identities=19% Similarity=0.205 Sum_probs=182.6
Q ss_pred CCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCE
Q 001380 602 FPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHA 680 (1089)
Q Consensus 602 ~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~ 680 (1089)
....+++++ ++++|++....++|.+++.+ ++.+..+... -..|.+++++++|+.+|+++..++.
T Consensus 171 ~v~~~~~~~-~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~~~~~~~~~ 235 (433)
T 3bws_A 171 FVETISIPE-HNELWVSQMQANAVHVFDLKTLAYKATVDLT--------------GKWSKILLYDPIRDLVYCSNWISED 235 (433)
T ss_dssp EEEEEEEGG-GTEEEEEEGGGTEEEEEETTTCCEEEEEECS--------------SSSEEEEEEETTTTEEEEEETTTTE
T ss_pred ceeEEEEcC-CCEEEEEECCCCEEEEEECCCceEEEEEcCC--------------CCCeeEEEEcCCCCEEEEEecCCCc
Confidence 345678865 88999999999999999986 5666666532 1267999999999999999988999
Q ss_pred EEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC-------CCcEEEEEECCCCeEEEE
Q 001380 681 LREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA-------GQHQIWEHSTVDGVTRAF 753 (1089)
Q Consensus 681 I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~-------~~~~I~~~~~~~g~~~~~ 753 (1089)
|+.+|+.++........+ ..|.+++++|+++.||++.. .++.|+.||..++.....
T Consensus 236 i~~~d~~~~~~~~~~~~~-----------------~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~ 298 (433)
T 3bws_A 236 ISVIDRKTKLEIRKTDKI-----------------GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT 298 (433)
T ss_dssp EEEEETTTTEEEEECCCC-----------------SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE
T ss_pred EEEEECCCCcEEEEecCC-----------------CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee
Confidence 999999887765443211 24899999999999999886 456899999988866544
Q ss_pred eCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCcccc
Q 001380 754 SGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSE 833 (1089)
Q Consensus 754 ~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~ 833 (1089)
... -..|.+++++++++.+|++....++|+.++..++........
T Consensus 299 ~~~---------------~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-------------------- 343 (433)
T 3bws_A 299 IGP---------------PGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPV-------------------- 343 (433)
T ss_dssp EEE---------------EECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEEC--------------------
T ss_pred ccC---------------CCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecC--------------------
Confidence 311 125779999999989999999999999999986654322111
Q ss_pred ccccCceEEEEccCCc-EEEEeCCC--------------CEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEE
Q 001380 834 VLLQHPLGVYCAKNGQ-IYVADSYN--------------HKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGII 898 (1089)
Q Consensus 834 ~~l~~P~gva~~~~G~-lyVaD~~n--------------~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~ 898 (1089)
...|.+++++++|+ +|++...+ +.|+.+|..++.+...... -..|.+++
T Consensus 344 --~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~--------------~~~~~~~~ 407 (433)
T 3bws_A 344 --FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA--------------GNQPTGLD 407 (433)
T ss_dssp --SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC--------------SSSEEEEE
T ss_pred --CCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC--------------CCCCceEE
Confidence 13478999999995 88888764 4999999987776554321 13488999
Q ss_pred EccCCc-EEEEECCCCEEEEEeCCC
Q 001380 899 EAQNGN-LFIADTNNNIIRYLDLNK 922 (1089)
Q Consensus 899 vd~~G~-lyVad~~n~~I~~~~~~~ 922 (1089)
++++|+ ||+++..++.|+++++++
T Consensus 408 ~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 408 VSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp ECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EcCCCCEEEEEECCCCeEEEEEecC
Confidence 999886 777888899999998764
|
| >2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} | Back alignment and structure |
|---|
Probab=99.55 E-value=8.3e-15 Score=140.61 Aligned_cols=113 Identities=13% Similarity=0.220 Sum_probs=91.8
Q ss_pred CCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHH
Q 001380 429 IVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRN 508 (1089)
Q Consensus 429 ~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~ 508 (1089)
.+++++. .+++|..... ...+||++||+||++||++|+.+.|.|.+++++|+ .++.++.|+.+
T Consensus 5 ~~~~l~~--~~~~~~~~~~-~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~v~~~------------- 67 (126)
T 2l57_A 5 GIKQINF--QSINVVENLE-EAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKERE-GKFNIYYARLE------------- 67 (126)
T ss_dssp CSSCTTT--TCCSEESSTT-TCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSS-SSCEEEEEETT-------------
T ss_pred ccCCCCc--cccchhHHHH-HHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhc-CCeEEEEEeCC-------------
Confidence 4555553 3445554434 56689999999999999999999999999999997 46999999631
Q ss_pred HHHHcCCccceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 509 AVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 509 ~~~~~~~~~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
.|.+.++++.|+|.++|+++++|++|+++.++.|..+.+.+.++|+..+.
T Consensus 68 ------------~d~~~~~~~~~~v~~~Pt~~~~~~~G~~~~~~~G~~~~~~l~~~l~~~~~ 117 (126)
T 2l57_A 68 ------------EEKNIDLAYKYDANIVPTTVFLDKEGNKFYVHQGLMRKNNIETILNSLGV 117 (126)
T ss_dssp ------------SSHHHHHHHHTTCCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHHCC
T ss_pred ------------CCchHHHHHHcCCcceeEEEEECCCCCEEEEecCCCCHHHHHHHHHHHhc
Confidence 14456899999999999999999999999999999888888888876654
|
| >3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-15 Score=168.04 Aligned_cols=199 Identities=20% Similarity=0.199 Sum_probs=135.8
Q ss_pred CCceEEEEecCCcccCCchHHH----------------------------HHHHHHHHHcCCCC-CHHhHhhhcCCCHHH
Q 001380 77 GKVSAVLFDMDGVLCNSEEPSR----------------------------RAAVDVFAEMGVEV-TVEDFLPFMGTGEAN 127 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~~~----------------------------~a~~~~~~~~g~~~-~~~~~~~~~~~~~~~ 127 (1089)
.++++|+||+||||+|+...+. .++.+.++++|+.. +.+++....+.+...
T Consensus 30 ~~i~~viFD~dGTL~ds~~~~~~~~~~~~~~~~~l~~~~~~e~~s~hp~~~a~~~~~~~~g~~~~~~~~~~~~~G~~~~~ 109 (287)
T 3a1c_A 30 EKVTAVIFDKTGTLTKGKPEVTDLVPLNGDERELLRLAAIAERRSEHPIAEAIVKKALEHGIELGEPEKVEVIAGEGVVA 109 (287)
T ss_dssp HHCCEEEEECCCCCBCSCCEEEEEEESSSCHHHHHHHHHHHTTTCCSHHHHHHHHHHHHTTCCCCCCSCEEEETTTEEEE
T ss_pred hcCCEEEEeCCCCCcCCCEEEEEEEeCCCCHHHHHHHHHHHhhcCCCHHHHHHHHHHHhcCCCccccccceeecCCCeEE
Confidence 3479999999999999987664 89999999999873 445555555544322
Q ss_pred --HH---HHHHhhcCCCCCCHHHHHHHHHHHHHHH------------hcC--CCCCCCCccHHHHHHHHHhCCCeEEEEc
Q 001380 128 --FL---GGVASVKGVKGFDSEAAKKRFFEIYLDK------------YAK--PNSGIGFPGALELINQCKSKGLKVAVAS 188 (1089)
Q Consensus 128 --~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~--~~~~~~~pG~~~lL~~Lk~~Gi~vaIvS 188 (1089)
+. ..+....+... . .....+.+.+.+. +.. .....++||+.++|+.|+++|++++|+|
T Consensus 110 ~~~~~g~~~~~~~~~~~~-~--~~~~~~~~~~~~~g~~~i~~~~d~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~T 186 (287)
T 3a1c_A 110 DGILVGNKRLMEDFGVAV-S--NEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMIT 186 (287)
T ss_dssp TTEEEECHHHHHHTTCCC-C--HHHHHHHHHHHHTTCEEEEEEETTEEEEEEEEECCBCTTHHHHHHHHHHTTCEEEEEC
T ss_pred EEEEECCHHHHHhcCCCc-c--HHHHHHHHHHHhCCCeEEEEEECCEEEEEEEeccccchhHHHHHHHHHHCCCeEEEEe
Confidence 00 00001111110 0 1122233333221 100 0123789999999999999999999999
Q ss_pred CCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCC
Q 001380 189 SADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTT 268 (1089)
Q Consensus 189 n~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g 268 (1089)
|.....++..++.+|+. .+|+.++ |. ....++++++.. ++|+||||+.+|+.+|+++|+. +.+..+
T Consensus 187 ~~~~~~~~~~l~~~gl~-~~f~~i~---------~~--~K~~~~~~l~~~-~~~~~vGDs~~Di~~a~~ag~~-v~~~~~ 252 (287)
T 3a1c_A 187 GDNWRSAEAISRELNLD-LVIAEVL---------PH--QKSEEVKKLQAK-EVVAFVGDGINDAPALAQADLG-IAVGSG 252 (287)
T ss_dssp SSCHHHHHHHHHHHTCS-EEECSCC---------TT--CHHHHHHHHTTT-CCEEEEECTTTCHHHHHHSSEE-EEECCC
T ss_pred CCCHHHHHHHHHHhCCc-eeeeecC---------hH--HHHHHHHHHhcC-CeEEEEECCHHHHHHHHHCCee-EEeCCC
Confidence 99999999999999996 7776553 11 226788999999 9999999999999999999997 444332
Q ss_pred CCHHHHhhcCCcEEe--cCcccCCHHHHHhc
Q 001380 269 LSEERLKEASPSLIR--KEIGSVSLNDILTG 297 (1089)
Q Consensus 269 ~~~~~l~~~~~d~vi--~dl~el~i~~ll~~ 297 (1089)
. +.....+++++ .++.++ .+++..
T Consensus 253 --~-~~~~~~ad~v~~~~~~~~l--~~~l~~ 278 (287)
T 3a1c_A 253 --S-DVAVESGDIVLIRDDLRDV--VAAIQL 278 (287)
T ss_dssp --S-CCSSCCSSEEESSSCTHHH--HHHHHT
T ss_pred --C-HHHHhhCCEEEeCCCHHHH--HHHHHH
Confidence 1 12234789999 888877 555543
|
| >2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.4e-16 Score=169.93 Aligned_cols=202 Identities=16% Similarity=0.237 Sum_probs=133.9
Q ss_pred CCCCceEEEEecCCcccCCchHHHH------------------------HHHHHHHHcCCC-CCHHhHhhhcCCCHHHHH
Q 001380 75 KWGKVSAVLFDMDGVLCNSEEPSRR------------------------AAVDVFAEMGVE-VTVEDFLPFMGTGEANFL 129 (1089)
Q Consensus 75 ~~~~~k~ViFD~DGTL~d~~~~~~~------------------------a~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~ 129 (1089)
.+.++++|+||.||||++....+.. ++.+.++++|+. .+.+++....+.+.....
T Consensus 24 ~l~~i~~v~fDktGTLT~g~~~v~~~~~~~~~l~~~~~~e~~s~hp~a~ai~~~~~~~g~~~~~~~~~~~~~G~g~~~~~ 103 (263)
T 2yj3_A 24 KIKEIDTIIFEKTGTLTYGTPIVTQFIGDSLSLAYAASVEALSSHPIAKAIVKYAKEQGVKILEVKDFKEISGIGVRGKI 103 (263)
Confidence 3557899999999999986543322 222333333332 223344444444433333
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCc
Q 001380 130 GGVASVKGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMF 209 (1089)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~f 209 (1089)
.......+... ........+...|...+... ..++||+.++|+.|+++|++++++||.....++.+++++|+. .+|
T Consensus 104 ~~~~~~~G~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~gl~-~~f 179 (263)
T 2yj3_A 104 SDKIIEVKKAE-NNNDIAVYINGEPIASFNIS--DVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQ-EYY 179 (263)
Confidence 22211112111 00112222233333333222 378999999999999999999999999999999999999996 888
Q ss_pred cEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEe--cCcc
Q 001380 210 DAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIR--KEIG 287 (1089)
Q Consensus 210 d~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi--~dl~ 287 (1089)
+.++ |+.+..++++++..+++|+||||+.+|+.+++++|+. |.+|. ........+|+++ +++.
T Consensus 180 ~~~~-----------p~~k~~~~~~l~~~~~~~~~VGD~~~D~~aa~~Agv~---va~g~-~~~~~~~~ad~v~~~~~l~ 244 (263)
T 2yj3_A 180 SNLS-----------PEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVS---VAMGN-GVDISKNVADIILVSNDIG 244 (263)
Confidence 8776 3456789999999999999999999999999999954 44443 2333345789999 8998
Q ss_pred cCCHHHHHhc
Q 001380 288 SVSLNDILTG 297 (1089)
Q Consensus 288 el~i~~ll~~ 297 (1089)
++ .+++..
T Consensus 245 ~l--~~~l~~ 252 (263)
T 2yj3_A 245 TL--LGLIKN 252 (263)
Confidence 87 455544
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.6e-12 Score=144.67 Aligned_cols=246 Identities=13% Similarity=0.166 Sum_probs=170.1
Q ss_pred CCeEEEEeCCCCEEEEEeCC--CCE--EEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECC
Q 001380 612 NNRLFISDSNHNRIVVTDLD--GNF--IVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFV 687 (1089)
Q Consensus 612 ~g~L~vsd~~~~~I~~~~~~--g~~--~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~ 687 (1089)
++.+|+++...++|.+++.+ |+. +..+... ..|.+++++|+|+.||+++..++.|+.++.+
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~ 68 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVP---------------GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 68 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEEEEEECS---------------SCCCCEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEEeeeEecC---------------CCCceEEECCCCCEEEEeecCCCeEEEEEec
Confidence 56799998888999999875 543 2233221 2689999999999999999887899988876
Q ss_pred --CCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCC
Q 001380 688 --NDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGS 765 (1089)
Q Consensus 688 --~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~ 765 (1089)
++..+.+..... -..|.+++++|+|+.||++....+.|..|+..++........-
T Consensus 69 ~~~~~~~~~~~~~~---------------~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-------- 125 (343)
T 1ri6_A 69 PDDGALTFAAESAL---------------PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV-------- 125 (343)
T ss_dssp TTTCCEEEEEEEEC---------------SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE--------
T ss_pred CCCCceeecccccc---------------CCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccc--------
Confidence 666554432110 0168899999999999999988888988887433221111000
Q ss_pred CCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCC-CCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEE
Q 001380 766 SSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKT-GGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYC 844 (1089)
Q Consensus 766 ~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~-~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~ 844 (1089)
.....|.+++++++|+.||+++...++|+.++..+ +........ .... . .-..|.++++
T Consensus 126 ----~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-------~~~~--~-------~~~~~~~~~~ 185 (343)
T 1ri6_A 126 ----EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPA-------EVTT--V-------EGAGPRHMVF 185 (343)
T ss_dssp ----CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-------EEEC--S-------TTCCEEEEEE
T ss_pred ----cCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccc-------cccc--C-------CCCCcceEEE
Confidence 11235889999999999999998889999999876 444322100 0000 0 0125889999
Q ss_pred ccCCc-EEEEeCCCCEEEEEeCC--CCeEEEEecc--CCCCCCCCcccccccCCCceEEEccCCc-EEEEECCCCEEEEE
Q 001380 845 AKNGQ-IYVADSYNHKIKKLDPA--SNRVSTLAGI--GKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADTNNNIIRYL 918 (1089)
Q Consensus 845 ~~~G~-lyVaD~~n~~I~~~d~~--~~~v~t~~g~--g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~~n~~I~~~ 918 (1089)
+++|+ +|+++..+++|..++.+ ++.+...... ...+ ......|.+++++++|+ ||+++..++.|.++
T Consensus 186 ~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~-------~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~ 258 (343)
T 1ri6_A 186 HPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN-------FSDTRWAADIHITPDGRHLYACDRTASLITVF 258 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTT-------CCSCCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcc-------ccccCCccceEECCCCCEEEEEecCCCEEEEE
Confidence 99996 99999889999999874 3443322111 0100 01234577899999985 88899999999999
Q ss_pred eCCC
Q 001380 919 DLNK 922 (1089)
Q Consensus 919 ~~~~ 922 (1089)
++..
T Consensus 259 d~~~ 262 (343)
T 1ri6_A 259 SVSE 262 (343)
T ss_dssp EECT
T ss_pred EEcC
Confidence 9983
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-12 Score=148.41 Aligned_cols=232 Identities=13% Similarity=0.100 Sum_probs=159.4
Q ss_pred CCCCceEEEeecCCeEEEEeCCCCEEEEEeCC--CCEE--EEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEE
Q 001380 600 LKFPGKLAIDILNNRLFISDSNHNRIVVTDLD--GNFI--VQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVAD 675 (1089)
Q Consensus 600 l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~--g~~~--~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD 675 (1089)
...|..+++++.+..||+++...+.|.+++.+ |... ..+...+. |+........|.+++++|+|+ +|+++
T Consensus 85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~-----~p~~~~~~~~~~~~~~spdg~-l~v~~ 158 (347)
T 3hfq_A 85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGH-----GPRPEQDGSHIHYTDLTPDNR-LAVID 158 (347)
T ss_dssp SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCC-----CSSTTCSSCCEEEEEECTTSC-EEEEE
T ss_pred CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCC-----CCCccccCCCceEEEECCCCc-EEEEe
Confidence 46789999999667799999888898888764 4432 23322211 111112345789999999999 99999
Q ss_pred CCCCEEEEEECC-CCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECC--CCeEEE
Q 001380 676 TENHALREIDFV-NDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTV--DGVTRA 752 (1089)
Q Consensus 676 ~~n~~I~~~d~~-~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~--~g~~~~ 752 (1089)
..++.|+.++.+ ++.+..+...... .-..|.+++++|+|+.+|+++...+.|..|+.. ++....
T Consensus 159 ~~~~~v~~~~~~~~g~~~~~~~~~~~-------------~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~ 225 (347)
T 3hfq_A 159 LGSDKVYVYNVSDAGQLSEQSVLTME-------------AGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQ 225 (347)
T ss_dssp TTTTEEEEEEECTTSCEEEEEEEECC-------------TTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred CCCCEEEEEEECCCCcEEEeeeEEcC-------------CCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEE
Confidence 999999999987 5665544311100 012688999999998999999988887777654 465543
Q ss_pred EeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCC-CeEEEecCCCCCCCCccccCCCCCcc
Q 001380 753 FSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTG-GSRLLAGGDPIFPDNLFKFGDRDGMG 831 (1089)
Q Consensus 753 ~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~-~~~~~~g~~~~~~~~l~~~g~~dg~~ 831 (1089)
........ .+ ......|.+++++|+|+.||+++...++|..++.+.+ ....+..- ..
T Consensus 226 ~~~~~~~~--~~----~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~---------~~------- 283 (347)
T 3hfq_A 226 LGIVKTIP--AD----YTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQI---------ST------- 283 (347)
T ss_dssp EEEEESSC--TT----CCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEE---------EC-------
T ss_pred eeeeeecC--CC----CCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEE---------ec-------
Confidence 32111000 00 1122468899999999899999999999999987632 22222110 00
Q ss_pred ccccccCceEEEEccCCc-EEEEeCCCCEEEEE--eCCCCeEEEEec
Q 001380 832 SEVLLQHPLGVYCAKNGQ-IYVADSYNHKIKKL--DPASNRVSTLAG 875 (1089)
Q Consensus 832 ~~~~l~~P~gva~~~~G~-lyVaD~~n~~I~~~--d~~~~~v~t~~g 875 (1089)
.-..|.+++++++|+ ||+++..++.|..+ |++++.+..+..
T Consensus 284 ---~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~~~~ 327 (347)
T 3hfq_A 284 ---EGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSLLQK 327 (347)
T ss_dssp ---SSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred ---CCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEeccc
Confidence 013589999999995 99999988888877 888888887753
|
| >1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.4e-14 Score=145.41 Aligned_cols=123 Identities=15% Similarity=0.283 Sum_probs=104.1
Q ss_pred CCCCCCCCCcccc--C-------CCCC----ceeecccc-cCCCEEEEEEe-cCCCcchh-hhhhhHHHHHHHc-CCCCE
Q 001380 425 KTTPIVPEFPAKL--D-------WLNT----APLQFRRD-LKGKVVVLDFW-TYCCINCM-HVLPDLEFLEKKY-KDMPF 487 (1089)
Q Consensus 425 ~~g~~~P~f~~~~--~-------~~~g----~~~~l~~~-~~gk~vll~Fw-a~wC~~C~-~~~p~l~~l~~~~-~~~~v 487 (1089)
++|+++|+|++.. . ..+| +.+++ ++ ++||++||+|| +.|||.|. .|++.+++.+++| ++.|+
T Consensus 2 ~vGd~aPdf~l~~~~~~~~~~~~~~~G~~~~~~v~l-~d~~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~g~ 80 (182)
T 1xiy_A 2 KENDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDT-HELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNF 80 (182)
T ss_dssp CTTCBCCCCEEEEEHHHHTC--------CCEEEEEH-HHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCC
T ss_pred CCCCCCCCeEEEcccccccccccccCCCccceeEeH-HHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 5799999999753 1 1156 68999 76 79999999887 78999999 9999999999999 99999
Q ss_pred E-EEEEeCCCCCChhcHHHHHHHHHHcCC-ccceeecCChhHHHHhCCC-----------ceeEEEEECCCCcEEEEecC
Q 001380 488 T-VVGVHSAKFDNEKDLEAIRNAVLRYGI-SHPVVNDGDMNLWRELGVN-----------SWPTFAVVGPNGKLLAQLAG 554 (1089)
Q Consensus 488 ~-vi~v~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~d~~~~l~~~~~v~-----------~~Pt~~lid~~G~i~~~~~G 554 (1089)
. |++||. +++...++|.+++++ +|+++.|.+++++++||+. ..+.+|||| +|+|++.+..
T Consensus 81 ~~V~gvS~------D~~~~~~~~~~~~~~~~f~lLsD~~~~~a~~yGv~~~~~~~G~g~~~~R~tfvId-dG~V~~~~v~ 153 (182)
T 1xiy_A 81 DDIYCITN------NDIYVLKSWFKSMDIKKIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKMFQE 153 (182)
T ss_dssp SEEEEEES------SCHHHHHHHHHHTTCCSSEEEECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEEEEC
T ss_pred cEEEEEeC------CCHHHHHHHHHHcCCCCceEEEeCchHHHHHhCCceeccccCCCCceEEEEEEEc-CCEEEEEEEe
Confidence 4 999985 678888999999999 6999999999999999973 367899998 9999998754
Q ss_pred C
Q 001380 555 E 555 (1089)
Q Consensus 555 ~ 555 (1089)
.
T Consensus 154 ~ 154 (182)
T 1xiy_A 154 K 154 (182)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=4.7e-15 Score=149.54 Aligned_cols=111 Identities=11% Similarity=0.125 Sum_probs=90.2
Q ss_pred HHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhH
Q 001380 173 LINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGV 252 (1089)
Q Consensus 173 lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di 252 (1089)
+|+.|+++|++++|+||.....++..++++|+. .+|+. .||++++|+.+++++|+++++|+||||+.+|+
T Consensus 39 ~l~~l~~~g~~~~i~T~~~~~~~~~~~~~~gl~-~~~~~---------~kpk~~~~~~~~~~~~~~~~~~~~vGD~~~Di 108 (164)
T 3e8m_A 39 GIFWAHNKGIPVGILTGEKTEIVRRRAEKLKVD-YLFQG---------VVDKLSAAEELCNELGINLEQVAYIGDDLNDA 108 (164)
T ss_dssp HHHHHHHTTCCEEEECSSCCHHHHHHHHHTTCS-EEECS---------CSCHHHHHHHHHHHHTCCGGGEEEECCSGGGH
T ss_pred HHHHHHHCCCEEEEEeCCChHHHHHHHHHcCCC-Eeecc---------cCChHHHHHHHHHHcCCCHHHEEEECCCHHHH
Confidence 789999999999999999999999999999996 55543 39999999999999999999999999999999
Q ss_pred HHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCC-HHHHHhc
Q 001380 253 QAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVS-LNDILTG 297 (1089)
Q Consensus 253 ~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~-i~~ll~~ 297 (1089)
.+|+++|+.++.. ...+.+. ..+++++.+-.... +.++++.
T Consensus 109 ~~~~~ag~~~~~~---~~~~~~~-~~ad~v~~~~~~~g~~~e~~~~ 150 (164)
T 3e8m_A 109 KLLKRVGIAGVPA---SAPFYIR-RLSTIFLEKRGGEGVFREFVEK 150 (164)
T ss_dssp HHHTTSSEEECCT---TSCHHHH-TTCSSCCCCCTTTTHHHHHHHH
T ss_pred HHHHHCCCeEEcC---ChHHHHH-HhCcEEeccCCCCcHHHHHHHH
Confidence 9999999865543 2233333 35888888855443 4444443
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.8e-12 Score=148.59 Aligned_cols=267 Identities=9% Similarity=0.072 Sum_probs=171.0
Q ss_pred CCCCceEEEeecCCeEEEEeCCCCEEEEEeC--CCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCE--EEEEE
Q 001380 600 LKFPGKLAIDILNNRLFISDSNHNRIVVTDL--DGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNL--LYVAD 675 (1089)
Q Consensus 600 l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~--~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~--lyVaD 675 (1089)
...|..+++++.+..||+++.. .|.+++. +|+........ .. ..|.+++++|+|+. +|+++
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~--~v~~~~~~~~g~~~~~~~~~-~~------------g~~~~~~~spdg~~l~~~~~~ 103 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK--KWSSFAVKSPTEIVHEASHP-IG------------GHPRANDADTNTRAIFLLAAK 103 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT--EEEEEEEEETTEEEEEEEEE-CC------------SSGGGGCTTSCCEEEEEEECS
T ss_pred CCCCcEEEECCCCCEEEEEccc--eEEEEEECCCCCEEEeeEee-cC------------CCCccEEECCCCCEEEEEEec
Confidence 3468899999866679999876 7888876 56654332211 00 13778999999984 45554
Q ss_pred -------C-----CCCEEEEEECC-CCeEE-EEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEE
Q 001380 676 -------T-----ENHALREIDFV-NDTVR-TLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIW 741 (1089)
Q Consensus 676 -------~-----~n~~I~~~d~~-~g~v~-~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~ 741 (1089)
. .++.+..++.+ +|.+. ++..... +....|++++++|+|+.||+++.+.++|+
T Consensus 104 ~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~-------------~~~~~~~~~~~spdG~~l~~~~~~~~~v~ 170 (365)
T 1jof_A 104 QPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEY-------------QENTGIHGMVFDPTETYLYSADLTANKLW 170 (365)
T ss_dssp STTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEEC-------------CTTCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred CCcceeccceeecCCceEEEEccCCCCcCcceEeeEEe-------------CCCCcceEEEECCCCCEEEEEcCCCCEEE
Confidence 1 45677777765 34332 2221100 01237999999999999999999999999
Q ss_pred EEECC-CCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcC--CCCeEE----EecCC
Q 001380 742 EHSTV-DGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLK--TGGSRL----LAGGD 814 (1089)
Q Consensus 742 ~~~~~-~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~--~~~~~~----~~g~~ 814 (1089)
.|+.. +|......... . ...-..|.+++++|+|++||+++..+++|..++.+ ++.... +..-
T Consensus 171 ~~~~~~~g~~~~~~~~~------~----~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~- 239 (365)
T 1jof_A 171 THRKLASGEVELVGSVD------A----PDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLI- 239 (365)
T ss_dssp EEEECTTSCEEEEEEEE------C----SSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESS-
T ss_pred EEEECCCCCEEEeeeEe------c----CCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcC-
Confidence 99987 67654332100 0 00023589999999999999999888898887654 344321 1110
Q ss_pred CCCCCCccccCCCCCccccccccCceEEE-EccCCc-EEEEeCCCC-----EEEEEeCC-CCeEEEEeccCCCCCCCCcc
Q 001380 815 PIFPDNLFKFGDRDGMGSEVLLQHPLGVY-CAKNGQ-IYVADSYNH-----KIKKLDPA-SNRVSTLAGIGKAGFKDGAA 886 (1089)
Q Consensus 815 ~~~~~~l~~~g~~dg~~~~~~l~~P~gva-~~~~G~-lyVaD~~n~-----~I~~~d~~-~~~v~t~~g~g~~g~~~g~~ 886 (1089)
+ .. + .|.. +... ....|.+++ +++||+ ||+++...+ +|.+++.+ ++.+..+......
T Consensus 240 ~---~~-~-~g~~-~~~~--~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~------- 304 (365)
T 1jof_A 240 P---PG-I-PDRD-PETG--KGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT------- 304 (365)
T ss_dssp C---TT-C-CCBC-TTTS--SBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC-------
T ss_pred C---CC-c-CCcc-cccc--cccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeec-------
Confidence 0 00 0 0000 0000 112588999 999995 899987655 88888764 5666543210000
Q ss_pred cccccCCCceEEEcc---CC-cEEEEECCCCEEEEEeCCCC
Q 001380 887 LAAQLSEPAGIIEAQ---NG-NLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 887 ~~~~l~~P~gi~vd~---~G-~lyVad~~n~~I~~~~~~~~ 923 (1089)
.-..|.++++++ +| .||+++..+++|.+++.+..
T Consensus 305 ---~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 305 ---PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ---SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred ---CCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 113488999998 67 49999988899999998776
|
| >3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-14 Score=141.71 Aligned_cols=104 Identities=26% Similarity=0.396 Sum_probs=90.8
Q ss_pred cCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCc
Q 001380 437 LDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGIS 516 (1089)
Q Consensus 437 ~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~ 516 (1089)
+.+.+|...++ ++++||++||+||++||++|+.+.|.|.+++++|++. +.++.|.+
T Consensus 36 l~~~~~~~~~l-~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~v~~---------------------- 91 (141)
T 3hxs_A 36 IADYENHSKEW-KYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGK-IYIYKVNV---------------------- 91 (141)
T ss_dssp TCCCSSCCCCC-CCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT-CEEEEEET----------------------
T ss_pred hhccccchhHH-HHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCc-eEEEEEEC----------------------
Confidence 34557777888 7889999999999999999999999999999999864 88888865
Q ss_pred cceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 517 HPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 517 ~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
|.+.++++.|+|.++|+++++|++|+++ ++.|..+.+.+.++|+.+++
T Consensus 92 -----~~~~~~~~~~~v~~~Pt~~~~~~~g~~~-~~~G~~~~~~l~~~l~~~l~ 139 (141)
T 3hxs_A 92 -----DKEPELARDFGIQSIPTIWFVPMKGEPQ-VNMGALSKEQLKGYIDKVLL 139 (141)
T ss_dssp -----TTCHHHHHHTTCCSSSEEEEECSSSCCE-EEESCCCHHHHHHHHHHTTC
T ss_pred -----CCCHHHHHHcCCCCcCEEEEEeCCCCEE-EEeCCCCHHHHHHHHHHHHc
Confidence 4566899999999999999999999987 78899899999998887653
|
| >3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0 | Back alignment and structure |
|---|
Probab=99.52 E-value=4.6e-14 Score=154.51 Aligned_cols=76 Identities=24% Similarity=0.313 Sum_probs=65.2
Q ss_pred ccCCCCCHHHHHHHHHHcCCCCCcEEEEcCCh-hhHHHHHHcCCeEEEEcCCC-CHHHHh------hcCCcEEecCcccC
Q 001380 218 FENLKPAPDIFLSASKILNVPTSECIVIEDAL-AGVQAAKAAQMRCIAVTTTL-SEERLK------EASPSLIRKEIGSV 289 (1089)
Q Consensus 218 ~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~-~~~~l~------~~~~d~vi~dl~el 289 (1089)
...+||++.+|+.+++++|+++++++||||++ +|+.+|+++|+++++|.+|. ..+.+. ...|+++++++.+|
T Consensus 183 ~~~~kp~~~~~~~~~~~~~~~~~~~~~vGD~~~~Di~~~~~~g~~~~~v~~g~~~~~~~~~~~~~~~~~~d~v~~~~~el 262 (268)
T 3qgm_A 183 VVVGKPSEVIMREALDILGLDAKDVAVVGDQIDVDVAAGKAIGAETVLVLTGVTTRENLDQMIERHGLKPDYVFNSLKDM 262 (268)
T ss_dssp EECSTTSHHHHHHHHHHHTCCGGGEEEEESCTTTHHHHHHHHTCEEEEESSSSCCTTTHHHHHHHHTCCCSEEESSHHHH
T ss_pred eecCCCCHHHHHHHHHHhCCCchhEEEECCCchHHHHHHHHCCCcEEEECCCCCCHHHHHhhccccCCCCCEEECCHHHH
Confidence 44689999999999999999999999999995 99999999999999999987 444443 23799999999887
Q ss_pred CHHHHH
Q 001380 290 SLNDIL 295 (1089)
Q Consensus 290 ~i~~ll 295 (1089)
.++|
T Consensus 263 --~~~l 266 (268)
T 3qgm_A 263 --VEAL 266 (268)
T ss_dssp --HHTC
T ss_pred --HHHH
Confidence 4443
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.6e-12 Score=140.68 Aligned_cols=267 Identities=12% Similarity=0.081 Sum_probs=172.3
Q ss_pred CCCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEE---eeCCCEEEE
Q 001380 597 TSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAY---NAKKNLLYV 673 (1089)
Q Consensus 597 ~~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~---d~~g~~lyV 673 (1089)
.++-.+|.++++|..++++|+++..+++|.++++++.....+-..+.. .+| .....|.||.+ |++|. |||
T Consensus 9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s--~~g----~~~~~~sGl~~~~~D~~gr-L~v 81 (334)
T 2p9w_A 9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGAS--SNG----DGEQQMSGLSLLTHDNSKR-LFA 81 (334)
T ss_dssp CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTC--CSS----CCSEEEEEEEESSSSSCCE-EEE
T ss_pred cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCcc--ccC----CCcceeeEEEEeccCCCCc-EEE
Confidence 355579999999988999999999999999999985433333221111 001 01235789999 78865 776
Q ss_pred -EEC------------CCCEEEEEECC---CCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC
Q 001380 674 -ADT------------ENHALREIDFV---NDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ 737 (1089)
Q Consensus 674 -aD~------------~n~~I~~~d~~---~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~ 737 (1089)
+|. +.+.|.++|+. ++.....+........ -..........+.||++|++| +.||++...
T Consensus 82 v~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~---~~~~~g~~~~~~nDvavD~~G-naYVt~s~~ 157 (334)
T 2p9w_A 82 VMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDE---FEKKAGKRPFGVVQSAQDRDG-NSYVAFALG 157 (334)
T ss_dssp EEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHH---HHHHHSSCCEEEEEEEECTTS-CEEEEEEES
T ss_pred EEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCcccccc---ccccccccccCCceeEECCCC-CEEEeCCCC
Confidence 663 36889999998 5554444321100000 000000123468999999988 999999999
Q ss_pred -cEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCC
Q 001380 738 -HQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPI 816 (1089)
Q Consensus 738 -~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~ 816 (1089)
+.|+++++++..+..+.-... .......++||+++|+|+.|+++++ .++|.+|++.. .+..
T Consensus 158 ~~~I~rV~pdG~~~~~~~~~~~---------~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~-pv~~------- 219 (334)
T 2p9w_A 158 MPAIARVSADGKTVSTFAWESG---------NGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSK-PYAW------- 219 (334)
T ss_dssp SCEEEEECTTSCCEEEEEECCC---------CSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSS-SSCC-------
T ss_pred CCeEEEEeCCCCEEeeeeecCC---------CcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCC-Ccce-------
Confidence 999999998876665542110 0122456899999999999999999 99999999872 2110
Q ss_pred CCCCccccCCC-CCccccccccCceEE-EEccCCcE-EEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCC
Q 001380 817 FPDNLFKFGDR-DGMGSEVLLQHPLGV-YCAKNGQI-YVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSE 893 (1089)
Q Consensus 817 ~~~~l~~~g~~-dg~~~~~~l~~P~gv-a~~~~G~l-yVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~ 893 (1089)
.++-. .| ....+..|.+| +...+|++ +|++..++++...+.++=.-..+.+.. ...+.
T Consensus 220 ------~v~~~~~G--~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~DgW~sa~~~g~~----------~~~~~- 280 (334)
T 2p9w_A 220 ------PEPVKING--DFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDNWKSANIKKTK----------RSELQ- 280 (334)
T ss_dssp ------CEECEESS--CCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSSTTSEEEEEEEE----------CGGGG-
T ss_pred ------eecccccC--CcccccCcccccccccCCEEEEEEcCCCCEEEEECCCCcceeEEeeee----------cCccc-
Confidence 00000 01 11246788995 66678876 999988888777776652222222221 12444
Q ss_pred CceEEEc------cCCcEEEEECC
Q 001380 894 PAGIIEA------QNGNLFIADTN 911 (1089)
Q Consensus 894 P~gi~vd------~~G~lyVad~~ 911 (1089)
+.|++++ .+++||+.+..
T Consensus 281 ~~g~tt~t~~~~~~~~~iYvv~~~ 304 (334)
T 2p9w_A 281 NSGFTAVADYYQGSEQGLYAVSAF 304 (334)
T ss_dssp SSCEEEEEEEEETTEEEEEEEECC
T ss_pred cCceeEEEEeccccCCeEEEEeee
Confidence 7788776 45679999854
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.52 E-value=7e-13 Score=151.09 Aligned_cols=230 Identities=17% Similarity=0.174 Sum_probs=145.2
Q ss_pred cCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecC---CCEEEE
Q 001380 656 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPI---NEKVYI 732 (1089)
Q Consensus 656 f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~---g~~lyv 732 (1089)
+..|.+|+++++|+ |||++.. ++|++++ ++..+.++..... ...+..|.+|+++|+ ++.|||
T Consensus 30 l~~P~~ia~~pdG~-l~V~e~~-g~I~~i~--~g~~~~~~~~~v~-----------~~g~~~p~gia~~pdf~~~g~lYv 94 (352)
T 2ism_A 30 LEVPWALAFLPDGG-MLIAERP-GRIRLFR--EGRLSTYAELSVY-----------HRGESGLLGLALHPRFPQEPYVYA 94 (352)
T ss_dssp CSCEEEEEECTTSC-EEEEETT-TEEEEEE--TTEEEEEEECCCC-----------CSTTCSEEEEEECTTTTTSCEEEE
T ss_pred CCCceEEEEcCCCe-EEEEeCC-CeEEEEE--CCCccEeecceEe-----------ecCCCCceeEEECCCCCCCCEEEE
Confidence 67899999999998 9999986 8999999 5666666532210 011458999999998 679999
Q ss_pred EECCC-----cEEEEEECCCCeEE---EE-eCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCC----------
Q 001380 733 AMAGQ-----HQIWEHSTVDGVTR---AF-SGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSE---------- 793 (1089)
Q Consensus 733 ad~~~-----~~I~~~~~~~g~~~---~~-~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~---------- 793 (1089)
++... ++|++++..++.+. .+ .+.. ........|.+|++++|| +|||++..
T Consensus 95 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p---------~~~~~~h~~~~l~~~pdG-~Lyv~~G~~~~~~~~~d~ 164 (352)
T 2ism_A 95 YRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIP---------ARPHGLHSGGRIAFGPDG-MLYVTTGEVYERELAQDL 164 (352)
T ss_dssp EEEECTTSSEEEEEEEEECSSCEEEEEEEEEEEC---------CCTTCCCCCCCEEECTTS-CEEEECCCTTCGGGGGCT
T ss_pred EEecCCCCCccEEEEEEeCCCCcCceEEEEEeCC---------CCCCCCcCCceEEECCCC-CEEEEECCCCCCccccCC
Confidence 99865 88999998765321 11 1100 001234568999999999 99999742
Q ss_pred ---CCeEEEEEcCCCCeEEEecCCCCCCCCccccCC-CCCccccccccCceEEEEcc-CCcEEEEeCCCCEEEEEeCCCC
Q 001380 794 ---SSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGD-RDGMGSEVLLQHPLGVYCAK-NGQIYVADSYNHKIKKLDPASN 868 (1089)
Q Consensus 794 ---~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~-~dg~~~~~~l~~P~gva~~~-~G~lyVaD~~n~~I~~~d~~~~ 868 (1089)
.++|.++++++. +..+ +.|.-+. ........-+.+|.|+++|+ +|+||++|.+++.+.. ....
T Consensus 165 ~~~~g~I~ri~~dG~----~p~~------npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~--~~~d 232 (352)
T 2ism_A 165 ASLGGKILRLTPEGE----PAPG------NPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQG--YGHD 232 (352)
T ss_dssp TCSSSEEEEECTTSS----BCTT------CTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC--------CCC
T ss_pred CCCceEEEEEcCCCC----CCCC------CcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCC--CCCe
Confidence 368999988742 1111 2221000 00000011256799999999 7899999998877322 1112
Q ss_pred eEEEEeccCCCCCC--------CC---c-ccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 869 RVSTLAGIGKAGFK--------DG---A-ALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 869 ~v~t~~g~g~~g~~--------~g---~-~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
++..+...+..|+. .+ + ........|.|+++ .+|++||++..+++|.++++++.
T Consensus 233 ei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~ 298 (352)
T 2ism_A 233 EVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGE 298 (352)
T ss_dssp EEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEE
T ss_pred EEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCC
Confidence 33333222222211 00 0 01112357899999 57899999999999999998765
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=5.2e-12 Score=152.63 Aligned_cols=253 Identities=15% Similarity=0.132 Sum_probs=183.5
Q ss_pred EEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEE
Q 001380 607 AIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREID 685 (1089)
Q Consensus 607 avd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d 685 (1089)
++++ ++++||+....+.|.++|.+ |+.+.++..+ ..|++++++|+|++||+++.. +.|+.||
T Consensus 144 ~~~p-~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g---------------~~~~~v~~spdg~~l~v~~~d-~~V~v~D 206 (543)
T 1nir_A 144 DLDL-PNLFSVTLRDAGQIALVDGDSKKIVKVIDTG---------------YAVHISRMSASGRYLLVIGRD-ARIDMID 206 (543)
T ss_dssp CCCG-GGEEEEEEGGGTEEEEEETTTCCEEEEEECS---------------TTEEEEEECTTSCEEEEEETT-SEEEEEE
T ss_pred ccCC-CCEEEEEEcCCCeEEEEECCCceEEEEEecC---------------cccceEEECCCCCEEEEECCC-CeEEEEE
Confidence 3676 78999999999999999986 7777777543 137999999999999999976 8999999
Q ss_pred C--CCCeE-EEEecCCCCCCCCCCCCcccccccCCceeEEEec----CCCEEEEEECCCcEEEEEECCCCeEEE-EeCCC
Q 001380 686 F--VNDTV-RTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKP----INEKVYIAMAGQHQIWEHSTVDGVTRA-FSGDG 757 (1089)
Q Consensus 686 ~--~~g~v-~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~----~g~~lyvad~~~~~I~~~~~~~g~~~~-~~g~g 757 (1089)
+ .++.+ .++. .| ..|++++++| +|+.+|+++...++|..+|..++++.. +...+
T Consensus 207 ~~~~t~~~~~~i~-~g-----------------~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g 268 (543)
T 1nir_A 207 LWAKEPTKVAEIK-IG-----------------IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRG 268 (543)
T ss_dssp TTSSSCEEEEEEE-CC-----------------SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCE
T ss_pred CcCCCCcEEEEEe-cC-----------------CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccC
Confidence 9 66554 3343 22 2699999999 999999999888999999988876543 43222
Q ss_pred ccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeE---EEecCCCCCCCCccccCCCCCccccc
Q 001380 758 YERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR---LLAGGDPIFPDNLFKFGDRDGMGSEV 834 (1089)
Q Consensus 758 ~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~---~~~g~~~~~~~~l~~~g~~dg~~~~~ 834 (1089)
... ++.. . ..-..+.+|+++++++.+|++..++++|..++..+.... .+..
T Consensus 269 ~~~--~~~~-~-~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~---------------------- 322 (543)
T 1nir_A 269 MTV--DTQT-Y-HPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA---------------------- 322 (543)
T ss_dssp ECS--SSCC-E-ESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEEC----------------------
T ss_pred ccc--Cccc-c-ccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEecc----------------------
Confidence 100 0000 0 001246789999998899999999999999998754321 1110
Q ss_pred cccCceEEEEccCCc-EEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCC-ceEEE-ccC-CcEEEEEC
Q 001380 835 LLQHPLGVYCAKNGQ-IYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEP-AGIIE-AQN-GNLFIADT 910 (1089)
Q Consensus 835 ~l~~P~gva~~~~G~-lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P-~gi~v-d~~-G~lyVad~ 910 (1089)
-.+|.+++++++|+ +|++....++|.++|..++.+......+. ..+| .|..+ +++ |.+|++..
T Consensus 323 -~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~------------~ph~g~g~~~~~p~~g~~~~s~~ 389 (543)
T 1nir_A 323 -APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK------------TPHPGRGANFVHPKYGPVWSTSH 389 (543)
T ss_dssp -CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS------------SBCCTTCEEEEETTTEEEEEEEB
T ss_pred -CcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCC------------CCCCCCCcccCCCCCccEEEecc
Confidence 13588999999996 88999889999999999887765433221 1122 24443 555 67999875
Q ss_pred -CCCEEEEEeCCCC------CceEEEEeec
Q 001380 911 -NNNIIRYLDLNKE------EPELQTLELK 933 (1089)
Q Consensus 911 -~n~~I~~~~~~~~------~~~~~~l~~~ 933 (1089)
+++.|.+++.+.. ...+.++.+.
T Consensus 390 ~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~ 419 (543)
T 1nir_A 390 LGDGSISLIGTDPKNHPQYAWKKVAELQGQ 419 (543)
T ss_dssp SSSSEEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred CCCceEEEEEeCCCCCchhcCeEEEEEEcC
Confidence 6799999999862 2356777643
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.7e-12 Score=140.84 Aligned_cols=248 Identities=11% Similarity=0.064 Sum_probs=173.2
Q ss_pred CCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC----
Q 001380 602 FPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT---- 676 (1089)
Q Consensus 602 ~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~---- 676 (1089)
.|..+++++.++.+|+++...++|.++|.. ++.+..+.... .+ ..-..|.+++++++|+.||+++.
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~s~dg~~l~~~~~~~~~ 105 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLST-PE--------ERVKSLFGAALSPDGKTLAIYESPVRL 105 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB-TT--------EEEECTTCEEECTTSSEEEEEEEEEEE
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCC-cc--------cccccccceEECCCCCEEEEEeccccc
Confidence 378899998666899999989999999985 67766655431 10 01126899999999998999962
Q ss_pred -------CCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCe
Q 001380 677 -------ENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGV 749 (1089)
Q Consensus 677 -------~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~ 749 (1089)
.++.|+.+|..++.+......+ ..|.+++++|+|+.||++ ++.|+.+|..++.
T Consensus 106 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-----------------~~~~~~~~s~dg~~l~~~---~~~i~~~d~~~~~ 165 (337)
T 1pby_B 106 ELTHFEVQPTRVALYDAETLSRRKAFEAP-----------------RQITMLAWARDGSKLYGL---GRDLHVMDPEAGT 165 (337)
T ss_dssp CSSCEEECCCEEEEEETTTTEEEEEEECC-----------------SSCCCEEECTTSSCEEEE---SSSEEEEETTTTE
T ss_pred ccccccccCceEEEEECCCCcEEEEEeCC-----------------CCcceeEECCCCCEEEEe---CCeEEEEECCCCc
Confidence 3589999999887765443222 257899999999889999 4789999999887
Q ss_pred EEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCC-----------------------eEEEEEcCCCC
Q 001380 750 TRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESS-----------------------SIRALNLKTGG 806 (1089)
Q Consensus 750 ~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~-----------------------~I~~~~~~~~~ 806 (1089)
+......+. .+..++++++|+.||++....+ .|..+++.++.
T Consensus 166 ~~~~~~~~~---------------~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 230 (337)
T 1pby_B 166 LVEDKPIQS---------------WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE 230 (337)
T ss_dssp EEEEECSTT---------------TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC
T ss_pred Eeeeeeccc---------------cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCC
Confidence 654332110 1122355677766766655444 45777777665
Q ss_pred eEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCc
Q 001380 807 SRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGA 885 (1089)
Q Consensus 807 ~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~ 885 (1089)
...+.- +. .-..|.+++++++|+ +|++ ++.|.++|.+++.+......+
T Consensus 231 ~~~~~~------------~~--------~~~~~~~~~~s~dg~~l~~~---~~~v~~~d~~~~~~~~~~~~~-------- 279 (337)
T 1pby_B 231 MAMREV------------RI--------MDVFYFSTAVNPAKTRAFGA---YNVLESFDLEKNASIKRVPLP-------- 279 (337)
T ss_dssp EEEEEE------------EE--------CSSCEEEEEECTTSSEEEEE---ESEEEEEETTTTEEEEEEECS--------
T ss_pred ceEeec------------CC--------CCCceeeEEECCCCCEEEEe---CCeEEEEECCCCcCcceecCC--------
Confidence 542210 00 013588999999985 8888 489999999887665443221
Q ss_pred ccccccCCCceEEEccCCc-EEEEECCCCEEEEEeCCCCCceEEEEee
Q 001380 886 ALAAQLSEPAGIIEAQNGN-LFIADTNNNIIRYLDLNKEEPELQTLEL 932 (1089)
Q Consensus 886 ~~~~~l~~P~gi~vd~~G~-lyVad~~n~~I~~~~~~~~~~~~~~l~~ 932 (1089)
..|.+++++++|+ ||++ ..++.|.++++.+. ..+..+..
T Consensus 280 ------~~~~~~~~s~dg~~l~~~-~~~~~i~v~d~~~~-~~~~~~~~ 319 (337)
T 1pby_B 280 ------HSYYSVNVSTDGSTVWLG-GALGDLAAYDAETL-EKKGQVDL 319 (337)
T ss_dssp ------SCCCEEEECTTSCEEEEE-SBSSEEEEEETTTC-CEEEEEEC
T ss_pred ------CceeeEEECCCCCEEEEE-cCCCcEEEEECcCC-cEEEEEEc
Confidence 3489999999986 7776 56899999999876 24555553
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=5e-12 Score=143.52 Aligned_cols=261 Identities=15% Similarity=0.136 Sum_probs=163.0
Q ss_pred eecCCeEEEEeCC----CCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC-------
Q 001380 609 DILNNRLFISDSN----HNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT------- 676 (1089)
Q Consensus 609 d~~~g~L~vsd~~----~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~------- 676 (1089)
.|..+++||+|.. .++|.++|.+ ++++.+|..+ ..|+ ++++|+|+++||+++
T Consensus 41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG---------------~~P~-va~spDG~~lyVan~~~~r~~~ 104 (386)
T 3sjl_D 41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG---------------FLPN-PVVADDGSFIAHASTVFSRIAR 104 (386)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC---------------SSCE-EEECTTSSCEEEEEEEEEETTE
T ss_pred CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECC---------------CCCc-EEECCCCCEEEEEccccccccc
Confidence 3557899999986 6899999987 6677777654 1575 999999999999985
Q ss_pred --CCCEEEEEECCCCeEEE-Ee-cCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC-CcEEEEEECCCCeEE
Q 001380 677 --ENHALREIDFVNDTVRT-LA-GNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG-QHQIWEHSTVDGVTR 751 (1089)
Q Consensus 677 --~n~~I~~~d~~~g~v~~-~a-g~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~-~~~I~~~~~~~g~~~ 751 (1089)
..+.|.+||..++++.. +. +.|.. .+.-..|++++++|+|+++||++.. .+.|..+|..++++.
T Consensus 105 G~~~~~VsviD~~t~~v~~~I~v~~g~r-----------~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv 173 (386)
T 3sjl_D 105 GERTDYVEVFDPVTLLPTADIELPDAPR-----------FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFK 173 (386)
T ss_dssp EEEEEEEEEECTTTCCEEEEEEETTCCC-----------CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred CCCCCEEEEEECCCCeEEEEEECCCccc-----------cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEE
Confidence 24679999999876543 42 21111 0112489999999999999999975 789999999988654
Q ss_pred -EEeCCCccccCCCCCCCCccccCCce----EEEcCCCCEEEEEeCC---------------------------------
Q 001380 752 -AFSGDGYERNLNGSSSLNTSFAQPSG----ISLSPDFMEIYVADSE--------------------------------- 793 (1089)
Q Consensus 752 -~~~g~g~~~~~~g~~~~~~~~~~P~g----lav~~~g~~lyvad~~--------------------------------- 793 (1089)
.+.-.|. ....|.| +++.+||+.+||+-..
T Consensus 174 ~tI~v~g~------------~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~ 241 (386)
T 3sjl_D 174 RMLDVPDC------------YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLV 241 (386)
T ss_dssp EEEECCSE------------EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEE
T ss_pred EEEECCCc------------ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEE
Confidence 3321110 0111222 1333333222222211
Q ss_pred ----CCeEEEEEcCCCCeEEEecCCCCCCCCcccc-CCCCCccccccccCceEEEEccCC-cEEEEeC---------CCC
Q 001380 794 ----SSSIRALNLKTGGSRLLAGGDPIFPDNLFKF-GDRDGMGSEVLLQHPLGVYCAKNG-QIYVADS---------YNH 858 (1089)
Q Consensus 794 ----~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~-g~~dg~~~~~~l~~P~gva~~~~G-~lyVaD~---------~n~ 858 (1089)
+++|+.++..++..+.+..- .+|.- +-..| .+-.....+++++++ ++||+.. ..+
T Consensus 242 ~vs~~g~V~v~d~~~~~~~v~~~~------~~~~~~~~~~g----~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~ 311 (386)
T 3sjl_D 242 WPTYTGKIHQIDLSSGDAKFLPAV------EALTEAERADG----WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASR 311 (386)
T ss_dssp EEBTTSEEEEEECTTSSCEECCCE------ESSCHHHHHTT----EEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEE
T ss_pred EEeCCCEEEEEECCCCcceeecce------ecccccccccc----ccCCCcceeeECCCCCeEEEEeccccccccCCCCC
Confidence 34455555443332211000 00000 00000 000011126667765 7999864 136
Q ss_pred EEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc--EEEEECCCCEEEEEeCCCCCceEEEEeec
Q 001380 859 KIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN--LFIADTNNNIIRYLDLNKEEPELQTLELK 933 (1089)
Q Consensus 859 ~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~--lyVad~~n~~I~~~~~~~~~~~~~~l~~~ 933 (1089)
+|.+||.+++++..-...| ..|.+|+++++|+ ||+++..++.|.++|..+. ..+.++...
T Consensus 312 ~V~viD~~t~kv~~~i~vg--------------~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~-k~~~~i~~~ 373 (386)
T 3sjl_D 312 FVVVLDAKTGERLAKFEMG--------------HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG-EELRSVNQL 373 (386)
T ss_dssp EEEEEETTTCCEEEEEEEE--------------EEECEEEECSSSSCEEEEEETTTTEEEEEETTTC-CEEEEECCC
T ss_pred EEEEEECCCCeEEEEEECC--------------CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCC-cEEEEecCC
Confidence 8999999888775543222 2488999999985 8999999999999999887 456677643
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.5e-12 Score=133.65 Aligned_cols=224 Identities=15% Similarity=0.182 Sum_probs=152.9
Q ss_pred CCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC
Q 001380 598 SPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE 677 (1089)
Q Consensus 598 ~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~ 677 (1089)
+-...+.|+++++.+++||++...+++|+++|.+|+++.++...| +..+.||+++++|. +||++..
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g-------------~~D~EGIa~~~~g~-~~vs~E~ 89 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDF-------------VKDLETIEYIGDNQ-FVISDER 89 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSS-------------CSSEEEEEECSTTE-EEEEETT
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCC-------------CCChHHeEEeCCCE-EEEEECC
Confidence 334679999999988999975555899999999999998885532 34789999997765 8899999
Q ss_pred CCEEEEEECCC-CeEEEE--ecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCc-EEEEEEC--CCCeEE
Q 001380 678 NHALREIDFVN-DTVRTL--AGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQH-QIWEHST--VDGVTR 751 (1089)
Q Consensus 678 n~~I~~~d~~~-g~v~~~--ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~-~I~~~~~--~~g~~~ 751 (1089)
+++|..++... +.+..+ ...+..... .=...-|||+++.+++||++..... .|+.++. .+..++
T Consensus 90 ~~~l~~~~v~~~~~i~~~~~~~~~~~~~~----------~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~ 159 (255)
T 3qqz_A 90 DYAIYVISLTPNSEVKILKKIKIPLQESP----------TNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELH 159 (255)
T ss_dssp TTEEEEEEECTTCCEEEEEEEECCCSSCC----------CSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCE
T ss_pred CCcEEEEEcCCCCeeeeeeeecccccccc----------ccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCcee
Confidence 99999887654 322222 111100000 0123589999999999999987655 8888872 111122
Q ss_pred EEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCcc
Q 001380 752 AFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMG 831 (1089)
Q Consensus 752 ~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~ 831 (1089)
.+...- .. ....+..+++|+++|..+++|+...++..|..++.++..+..+.=.. | . .+
T Consensus 160 i~~~~~----~~----~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~----------g-~--~~ 218 (255)
T 3qqz_A 160 ISKDKA----LQ----RQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTK----------G-S--RG 218 (255)
T ss_dssp EEECHH----HH----HTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECST----------T-G--GG
T ss_pred eecchh----hc----cccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCC----------c-c--CC
Confidence 221100 00 01224578999999998899999999999999999865443331100 0 0 01
Q ss_pred ccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCC
Q 001380 832 SEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPAS 867 (1089)
Q Consensus 832 ~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~ 867 (1089)
-...+..|.|||+|++|++||+...| .+++|.+..
T Consensus 219 l~~~~~qpEGia~d~~G~lyIvsE~n-~~y~f~~~~ 253 (255)
T 3qqz_A 219 LSHNIKQAEGVAMDASGNIYIVSEPN-RFYRFTPQS 253 (255)
T ss_dssp CSSCCCSEEEEEECTTCCEEEEETTT-EEEEEEC--
T ss_pred cccccCCCCeeEECCCCCEEEEcCCc-eEEEEEecC
Confidence 12236789999999999999997664 999998753
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.50 E-value=9.3e-12 Score=136.72 Aligned_cols=224 Identities=12% Similarity=0.095 Sum_probs=164.3
Q ss_pred CceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC-CCEE
Q 001380 603 PGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE-NHAL 681 (1089)
Q Consensus 603 P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~-n~~I 681 (1089)
+..+++++ +|++|++ ..++|..+|++|+.+..+..... ....++.+.++|+ ++|++.. +++|
T Consensus 39 ~~~~~~~p-dG~ilvs--~~~~V~~~d~~G~~~W~~~~~~~-------------~~~~~~~~~~dG~-~lv~~~~~~~~v 101 (276)
T 3no2_A 39 CNSVAATK-AGEILFS--YSKGAKMITRDGRELWNIAAPAG-------------CEMQTARILPDGN-ALVAWCGHPSTI 101 (276)
T ss_dssp CCEEEECT-TSCEEEE--CBSEEEEECTTSCEEEEEECCTT-------------CEEEEEEECTTSC-EEEEEESTTEEE
T ss_pred CcCeEECC-CCCEEEe--CCCCEEEECCCCCEEEEEcCCCC-------------ccccccEECCCCC-EEEEecCCCCEE
Confidence 45678887 8889984 46889999999999988775310 1346788889999 7888877 8999
Q ss_pred EEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCcccc
Q 001380 682 REIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERN 761 (1089)
Q Consensus 682 ~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~ 761 (1089)
..++.++..+.++...+.. ......|+++++.++| .+++++..+++|..||+++..+..+...
T Consensus 102 ~~vd~~Gk~l~~~~~~~~~-----------~~~~~~~~~v~~~~~G-~~lv~~~~~~~v~~~d~~G~~~w~~~~~----- 164 (276)
T 3no2_A 102 LEVNMKGEVLSKTEFETGI-----------ERPHAQFRQINKNKKG-NYLVPLFATSEVREIAPNGQLLNSVKLS----- 164 (276)
T ss_dssp EEECTTSCEEEEEEECCSC-----------SSGGGSCSCCEECTTS-CEEEEETTTTEEEEECTTSCEEEEEECS-----
T ss_pred EEEeCCCCEEEEEeccCCC-----------CcccccccCceECCCC-CEEEEecCCCEEEEECCCCCEEEEEECC-----
Confidence 9999988777776432110 1123468889999988 6778899999999999995555566532
Q ss_pred CCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceE
Q 001380 762 LNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLG 841 (1089)
Q Consensus 762 ~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~g 841 (1089)
..|.++++.++| .++|++..+++|..+++++|....-.+. .+. ...++..|.+
T Consensus 165 -----------~~~~~~~~~~~g-~~~v~~~~~~~v~~~d~~tG~~~w~~~~-------------~~~--~~~~l~~~~~ 217 (276)
T 3no2_A 165 -----------GTPFSSAFLDNG-DCLVACGDAHCFVQLNLESNRIVRRVNA-------------NDI--EGVQLFFVAQ 217 (276)
T ss_dssp -----------SCCCEEEECTTS-CEEEECBTTSEEEEECTTTCCEEEEEEG-------------GGS--BSCCCSEEEE
T ss_pred -----------CCccceeEcCCC-CEEEEeCCCCeEEEEeCcCCcEEEEecC-------------CCC--CCcccccccc
Confidence 257788998888 8889999999999999996665432211 100 1124778999
Q ss_pred EEEccCCcEEEEeCC----------CCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEE
Q 001380 842 VYCAKNGQIYVADSY----------NHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIE 899 (1089)
Q Consensus 842 va~~~~G~lyVaD~~----------n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~v 899 (1089)
+++.++|++||+++. +.++..+|++++.+-++... ..+..++++|.
T Consensus 218 ~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~------------~~~~~~~~~~~ 273 (276)
T 3no2_A 218 LFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDK------------VKFGMISTICP 273 (276)
T ss_dssp EEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCT------------TTSCCCCEEEE
T ss_pred ceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCc------------ccccceeeeee
Confidence 999999999999963 34699999988777776543 25667777764
|
| >1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-14 Score=149.47 Aligned_cols=116 Identities=15% Similarity=0.055 Sum_probs=95.5
Q ss_pred CccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEEc
Q 001380 167 FPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIE 246 (1089)
Q Consensus 167 ~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VG 246 (1089)
.+...++|+.|+++|++++|+||.....++..++++|+. .+|+ ..||++..++++++++|+++++++|||
T Consensus 37 ~~~~~~~l~~L~~~G~~~~i~Tg~~~~~~~~~~~~lgl~-~~~~---------~~k~k~~~~~~~~~~~~~~~~~~~~vG 106 (180)
T 1k1e_A 37 HVRDGLGIKMLMDADIQVAVLSGRDSPILRRRIADLGIK-LFFL---------GKLEKETACFDLMKQAGVTAEQTAYIG 106 (180)
T ss_dssp EHHHHHHHHHHHHTTCEEEEEESCCCHHHHHHHHHHTCC-EEEE---------SCSCHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred ccchHHHHHHHHHCCCeEEEEeCCCcHHHHHHHHHcCCc-eeec---------CCCCcHHHHHHHHHHcCCCHHHEEEEC
Confidence 344568999999999999999999999999999999996 5542 259999999999999999999999999
Q ss_pred CChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHH-HHHh
Q 001380 247 DALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLN-DILT 296 (1089)
Q Consensus 247 D~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~-~ll~ 296 (1089)
|+.+|+.+++.+|+.++.. ...+.+. ..+++++.+..+..+. .+++
T Consensus 107 D~~~Di~~~~~ag~~~~~~---~~~~~~~-~~ad~v~~~~~~~g~~~~~~~ 153 (180)
T 1k1e_A 107 DDSVDLPAFAACGTSFAVA---DAPIYVK-NAVDHVLSTHGGKGAFREMSD 153 (180)
T ss_dssp CSGGGHHHHHHSSEEEECT---TSCHHHH-TTSSEECSSCTTTTHHHHHHH
T ss_pred CCHHHHHHHHHcCCeEEeC---CccHHHH-hhCCEEecCCCCCcHHHHHHH
Confidence 9999999999999886643 2233333 4699999998777554 4443
|
| >3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.9e-14 Score=135.63 Aligned_cols=106 Identities=25% Similarity=0.349 Sum_probs=86.9
Q ss_pred CCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHH
Q 001380 427 TPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAI 506 (1089)
Q Consensus 427 g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~ 506 (1089)
..++|++. ..++..++. ...+||++||+||++||++|+.+.|.|.++++++++ ++.++.|++
T Consensus 21 ~~~~~~~~----~~~~~~~~~-~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~------------ 82 (128)
T 3ul3_B 21 FKKVPRLQ----QNGSNIING-VNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGK-RIYLLKVDL------------ 82 (128)
T ss_dssp -----CCC----CCCCSSSSB-TTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG-GEEEEEEEG------------
T ss_pred hccCCccc----cCCccHHHH-HHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEEC------------
Confidence 44577776 225556666 677899999999999999999999999999999985 599999964
Q ss_pred HHHHHHcCCccceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHH
Q 001380 507 RNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVE 566 (1089)
Q Consensus 507 ~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~ 566 (1089)
|.+.+++++|+|.++|+++++ ++|+++.++.|..+.+++.++|+
T Consensus 83 ---------------d~~~~l~~~~~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~ 126 (128)
T 3ul3_B 83 ---------------DKNESLARKFSVKSLPTIILL-KNKTMLARKDHFVSSNDLIALIK 126 (128)
T ss_dssp ---------------GGCHHHHHHTTCCSSSEEEEE-ETTEEEEEESSCCCHHHHHHHHT
T ss_pred ---------------CCCHHHHHHcCCCCcCEEEEE-ECCEEEEEecCCCCHHHHHHHHH
Confidence 445689999999999999999 89999999999999888887764
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.9e-14 Score=164.52 Aligned_cols=96 Identities=21% Similarity=0.307 Sum_probs=88.1
Q ss_pred CCccHHHHHHHHHhCCCeEEEEcCCC------------hHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHH
Q 001380 166 GFPGALELINQCKSKGLKVAVASSAD------------RIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASK 233 (1089)
Q Consensus 166 ~~pG~~~lL~~Lk~~Gi~vaIvSn~~------------~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~ 233 (1089)
++||+.++|+.|+++|++++|+||.. ...+...++.+|+. |+.+++++++...||+|++|.++++
T Consensus 88 ~~pgv~e~L~~L~~~G~~l~IvTN~~gi~~g~~~~~~~~~~~~~~l~~lgl~---fd~i~~~~~~~~~KP~p~~~~~a~~ 164 (416)
T 3zvl_A 88 LYPEIPKKLQELAAEGYKLVIFTNQMGIGRGKLPAEVFKGKVEAVLEKLGVP---FQVLVATHAGLNRKPVSGMWDHLQE 164 (416)
T ss_dssp SCTTHHHHHHHHHHTTCEEEEEEECHHHHTTSSCHHHHHHHHHHHHHHHTSC---CEEEEECSSSTTSTTSSHHHHHHHH
T ss_pred hcccHHHHHHHHHHCCCeEEEEeCCccccCCCCCHHHHHHHHHHHHHHcCCC---EEEEEECCCCCCCCCCHHHHHHHHH
Confidence 78999999999999999999999965 23378889999995 8999999999999999999999999
Q ss_pred HcC----CCCCcEEEEcCCh-----------------hhHHHHHHcCCeEEE
Q 001380 234 ILN----VPTSECIVIEDAL-----------------AGVQAAKAAQMRCIA 264 (1089)
Q Consensus 234 ~lg----v~p~~~v~VGD~~-----------------~Di~aA~~aG~~~i~ 264 (1089)
++| +++++|+||||+. +|+.+|+++|++++.
T Consensus 165 ~l~~~~~v~~~~~l~VGDs~gr~~~~~~~~~~~d~s~~Di~~A~~aGi~f~~ 216 (416)
T 3zvl_A 165 QANEGIPISVEDSVFVGDAAGRLANWAPGRKKKDFSCADRLFALNVGLPFAT 216 (416)
T ss_dssp HSSTTCCCCGGGCEEECSCSCBCTTSSTTCCSCCSCCHHHHHHHHHTCCEEC
T ss_pred HhCCCCCCCHHHeEEEECCCCCcccccccccccCCChhhHHHHHHcCCcccC
Confidence 998 9999999999997 899999999998654
|
| >3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.1e-15 Score=153.95 Aligned_cols=100 Identities=8% Similarity=0.125 Sum_probs=83.2
Q ss_pred HHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhH
Q 001380 173 LINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGV 252 (1089)
Q Consensus 173 lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di 252 (1089)
+|+.|+++|++++|+||.....++.+++++|+. + +.. .||+++.++.+++++|+++++++||||+.+|+
T Consensus 47 ~l~~L~~~g~~~~i~T~~~~~~~~~~~~~lgi~--~----~~~-----~~~k~~~l~~~~~~~~~~~~~~~~vGD~~nD~ 115 (176)
T 3mmz_A 47 GIAALRKSGLTMLILSTEQNPVVAARARKLKIP--V----LHG-----IDRKDLALKQWCEEQGIAPERVLYVGNDVNDL 115 (176)
T ss_dssp HHHHHHHTTCEEEEEESSCCHHHHHHHHHHTCC--E----EES-----CSCHHHHHHHHHHHHTCCGGGEEEEECSGGGH
T ss_pred HHHHHHHCCCeEEEEECcChHHHHHHHHHcCCe--e----EeC-----CCChHHHHHHHHHHcCCCHHHEEEEcCCHHHH
Confidence 899999999999999999999999999999984 2 222 39999999999999999999999999999999
Q ss_pred HHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcc
Q 001380 253 QAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIG 287 (1089)
Q Consensus 253 ~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~ 287 (1089)
.+++++|+.++ .+...+.+. ..+++++.+-.
T Consensus 116 ~~~~~ag~~v~---~~~~~~~~~-~~ad~v~~~~~ 146 (176)
T 3mmz_A 116 PCFALVGWPVA---VASAHDVVR-GAARAVTTVPG 146 (176)
T ss_dssp HHHHHSSEEEE---CTTCCHHHH-HHSSEECSSCT
T ss_pred HHHHHCCCeEE---CCChhHHHH-HhCCEEecCCC
Confidence 99999996533 333333333 35799998843
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=5.5e-12 Score=135.83 Aligned_cols=209 Identities=12% Similarity=0.048 Sum_probs=149.1
Q ss_pred CCCceEEEeecCCeEEEEeC--CCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC
Q 001380 601 KFPGKLAIDILNNRLFISDS--NHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE 677 (1089)
Q Consensus 601 ~~P~~vavd~~~g~L~vsd~--~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~ 677 (1089)
.||.|+++++ +++||++.. +.++|.++|+. |+++..+..+. ...+.|++++ |+.||+++..
T Consensus 21 ~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~-------------~~fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 21 AFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD-------------SYFGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp CCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT-------------TCCEEEEEEE--TTEEEEEETT
T ss_pred CCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC-------------CcceEEEEEe--CCEEEEEEec
Confidence 4789999997 589999974 57899999987 88888776431 1244677775 6679999999
Q ss_pred CCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCC
Q 001380 678 NHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDG 757 (1089)
Q Consensus 678 n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g 757 (1089)
++.+.++|.++.++..-...| . ..+|+++ ++|+++|+++ ++++|+.+|+++..+..-...+
T Consensus 85 ~~~v~viD~~t~~v~~~i~~g-~---------------~~g~glt--~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg 145 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKNFTHQ-M---------------KDGWGLA--TDGKILYGSD-GTSILYEIDPHTFKLIKKHNVK 145 (266)
T ss_dssp CSEEEEEETTTTEEEEEEECC-S---------------SSCCEEE--ECSSSEEEEC-SSSEEEEECTTTCCEEEEEECE
T ss_pred CCEEEEEECCCCcEEEEEECC-C---------------CCeEEEE--ECCCEEEEEC-CCCeEEEEECCCCcEEEEEEEC
Confidence 999999999887654433222 1 1346655 4578999999 7899999999987654333222
Q ss_pred ccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCC-CC--ccccc
Q 001380 758 YERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDR-DG--MGSEV 834 (1089)
Q Consensus 758 ~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~-dg--~~~~~ 834 (1089)
.. ...+..|+++.+. +| .||++...++.|.++|+.++.+..... ++.. .. .....
T Consensus 146 ~~---------~~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~tg~V~~~I~-----------~~g~~~~~~~~~~~ 203 (266)
T 2iwa_A 146 YN---------GHRVIRLNELEYI-NG-EVWANIWQTDCIARISAKDGTLLGWIL-----------LPNLRKKLIDEGFR 203 (266)
T ss_dssp ET---------TEECCCEEEEEEE-TT-EEEEEETTSSEEEEEETTTCCEEEEEE-----------CHHHHHHHHHTTCT
T ss_pred CC---------CcccccceeEEEE-CC-EEEEecCCCCeEEEEECCCCcEEEEEE-----------CCCccccccccccc
Confidence 10 0234568899988 66 999999999999999999887643221 1100 00 00011
Q ss_pred cccCceEEEEccCC-cEEEEeCCCCEEEEEeCC
Q 001380 835 LLQHPLGVYCAKNG-QIYVADSYNHKIKKLDPA 866 (1089)
Q Consensus 835 ~l~~P~gva~~~~G-~lyVaD~~n~~I~~~d~~ 866 (1089)
....|.||+++++| .+||+.-+.+++.+++..
T Consensus 204 ~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 204 DIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp TCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred ccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 23578999999987 699999999999999753
|
| >3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.6e-15 Score=164.21 Aligned_cols=200 Identities=20% Similarity=0.258 Sum_probs=130.1
Q ss_pred CCCceEEEEecCCcccC----------------------------CchHHHHHHHHHHHHcCCCCC-HHhHhhhcCCCHH
Q 001380 76 WGKVSAVLFDMDGVLCN----------------------------SEEPSRRAAVDVFAEMGVEVT-VEDFLPFMGTGEA 126 (1089)
Q Consensus 76 ~~~~k~ViFD~DGTL~d----------------------------~~~~~~~a~~~~~~~~g~~~~-~~~~~~~~~~~~~ 126 (1089)
++++++|+||+||||++ +.+.+..++.+.++++|+... .+.+....+.+..
T Consensus 10 ~~~ik~i~FD~DGTL~d~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~ 89 (280)
T 3skx_A 10 AKDLQAVIFDKTGTLTEGRFGVTDIVGFNHSEDELLQIAASLEARSEHPIAAAIVEEAEKRGFGLTEVEEFRAIPGKGVE 89 (280)
T ss_dssp GGGCCEEEEECCCCCEEEEEEEEEEEESSSCHHHHHHHHHHHHTTCCSHHHHHHHHHHHHTTCCCCCCEEEEEETTTEEE
T ss_pred hcCCCEEEEeCCCcCCCCcEEEEEEEecCCCHHHHHHHHHHhhccCCCHHHHHHHHHHHhcCCCCCCccceeecCCCEEE
Confidence 34689999999999999 999999999999999988643 2333333333211
Q ss_pred HHH---------HHHHhhcCCCCCCHHHHHHHHHHHHHHHhc-C-CC--------CCCCCccHHHHHHHHHhCCCeEEEE
Q 001380 127 NFL---------GGVASVKGVKGFDSEAAKKRFFEIYLDKYA-K-PN--------SGIGFPGALELINQCKSKGLKVAVA 187 (1089)
Q Consensus 127 ~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~--------~~~~~pG~~~lL~~Lk~~Gi~vaIv 187 (1089)
... ..+....+... . .....+.+.....+. . .. ...++||+.++|+.|+++|++++|+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~ 166 (280)
T 3skx_A 90 GIVNGRRYMVVSPGYIRELGIKT-D--ESVEKLKQQGKTVVFILKNGEVSGVIALADRIRPESREAISKLKAIGIKCMML 166 (280)
T ss_dssp EEETTEEEEEECHHHHHHTTCCC-C--TTHHHHHTTTCEEEEEEETTEEEEEEEEEEEECTTHHHHHHHHHHTTCEEEEE
T ss_pred EEECCEEEEEecHHHHHHcCCCc-h--HHHHHHHhCCCeEEEEEECCEEEEEEEecCCCCHhHHHHHHHHHHCCCEEEEE
Confidence 110 11111122211 0 111111111000000 0 00 0057899999999999999999999
Q ss_pred cCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcC
Q 001380 188 SSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTT 267 (1089)
Q Consensus 188 Sn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~ 267 (1089)
||.....++..++.+|+. .+|+.+++.+.....||.++ .+ +|+||||+.+|+.+++.+|+ +|.+
T Consensus 167 T~~~~~~~~~~~~~~gl~-~~f~~~~~~~k~~~~k~~~~-------~~-----~~~~vGD~~nDi~~~~~Ag~---~va~ 230 (280)
T 3skx_A 167 TGDNRFVAKWVAEELGLD-DYFAEVLPHEKAEKVKEVQQ-------KY-----VTAMVGDGVNDAPALAQADV---GIAI 230 (280)
T ss_dssp CSSCHHHHHHHHHHHTCS-EEECSCCGGGHHHHHHHHHT-------TS-----CEEEEECTTTTHHHHHHSSE---EEEC
T ss_pred eCCCHHHHHHHHHHcCCh-hHhHhcCHHHHHHHHHHHHh-------cC-----CEEEEeCCchhHHHHHhCCc---eEEe
Confidence 999999999999999996 88888877764444444333 22 78999999999999999994 5656
Q ss_pred CCCHHHHhhcCCcEEe--cCcccCCHHHHHhc
Q 001380 268 TLSEERLKEASPSLIR--KEIGSVSLNDILTG 297 (1089)
Q Consensus 268 g~~~~~l~~~~~d~vi--~dl~el~i~~ll~~ 297 (1089)
+...+... ..+++++ .++.++ .+++..
T Consensus 231 ~~~~~~~~-~~a~~~~~~~~~~~l--~~~l~~ 259 (280)
T 3skx_A 231 GAGTDVAV-ETADIVLVRNDPRDV--AAIVEL 259 (280)
T ss_dssp SCCSSSCC-CSSSEECSSCCTHHH--HHHHHH
T ss_pred cCCcHHHH-hhCCEEEeCCCHHHH--HHHHHH
Confidence 65333322 2467776 777766 566543
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=4.1e-12 Score=143.35 Aligned_cols=206 Identities=12% Similarity=0.134 Sum_probs=152.1
Q ss_pred CCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC
Q 001380 657 NRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG 736 (1089)
Q Consensus 657 ~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~ 736 (1089)
..+.|++++++++.+|++|..++.|++++++++.+..+.. . ..|.+++++++| .+|++.
T Consensus 49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~-~-----------------~~v~~i~~~~dg-~l~v~~-- 107 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHAL-P-----------------FMGSALAKISDS-KQLIAS-- 107 (326)
T ss_dssp SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEEC-S-----------------SCEEEEEEEETT-EEEEEE--
T ss_pred CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEC-C-----------------CcceEEEEeCCC-eEEEEE--
Confidence 3578999999877899999999999999999988776642 1 257899999987 788887
Q ss_pred CcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCC------CCeEEEEEcCCCCeEEE
Q 001380 737 QHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSE------SSSIRALNLKTGGSRLL 810 (1089)
Q Consensus 737 ~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~------~~~I~~~~~~~~~~~~~ 810 (1089)
.+.|+.+|+.++.+..+..... ......+++++++++| ++|+++.. .+.|++++ + +....+
T Consensus 108 ~~gl~~~d~~~g~~~~~~~~~~----------~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~-~-g~~~~~ 174 (326)
T 2ghs_A 108 DDGLFLRDTATGVLTLHAELES----------DLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVA-K-GKVTKL 174 (326)
T ss_dssp TTEEEEEETTTCCEEEEECSST----------TCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEE-T-TEEEEE
T ss_pred CCCEEEEECCCCcEEEEeeCCC----------CCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEe-C-CcEEEe
Confidence 3569999999888776653210 0123468899999998 79998763 46888888 4 444433
Q ss_pred ecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEEEeCCCCEEEEEeCC--CC-eE---EEEeccCCCCCCC
Q 001380 811 AGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADSYNHKIKKLDPA--SN-RV---STLAGIGKAGFKD 883 (1089)
Q Consensus 811 ~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~~n~~I~~~d~~--~~-~v---~t~~g~g~~g~~~ 883 (1089)
.. .+..|.+++++++|+ +|++++.+++|.++|.+ ++ .+ ..+....
T Consensus 175 ~~----------------------~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~------ 226 (326)
T 2ghs_A 175 FA----------------------DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST------ 226 (326)
T ss_dssp EE----------------------EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT------
T ss_pred eC----------------------CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECC------
Confidence 21 134588999999995 99999999999999975 55 32 1221110
Q ss_pred CcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCCCceEEEEe
Q 001380 884 GAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKEEPELQTLE 931 (1089)
Q Consensus 884 g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~~~~~~~l~ 931 (1089)
.....|.|+++|++|+|||+...+++|.+++++++ .+..+.
T Consensus 227 -----~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~--~~~~i~ 267 (326)
T 2ghs_A 227 -----GIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGN--HIARYE 267 (326)
T ss_dssp -----TSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCC--EEEEEE
T ss_pred -----CCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCCC--EEEEEE
Confidence 01235889999999999999988899999999665 445444
|
| >3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-14 Score=158.51 Aligned_cols=81 Identities=19% Similarity=0.238 Sum_probs=67.6
Q ss_pred ccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCC-hhhHHHHHHcCCeEEEEcCCC-CHHHHhhc--CCcEEec
Q 001380 209 FDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDA-LAGVQAAKAAQMRCIAVTTTL-SEERLKEA--SPSLIRK 284 (1089)
Q Consensus 209 fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~-~~Di~aA~~aG~~~i~V~~g~-~~~~l~~~--~~d~vi~ 284 (1089)
|+.+++.+....+||++.+|+.+++++|+++++++||||+ .+|+.+|+.+|+.+++|++|. ..+++++. .||++++
T Consensus 170 ~~~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~~~iGD~~~~Di~~~~~aG~~~~~v~~g~~~~~~~~~~~~~~d~v~~ 249 (266)
T 3pdw_A 170 LTVSTGVQPVFIGKPESIIMEQAMRVLGTDVSETLMVGDNYATDIMAGINAGMDTLLVHTGVTKREHMTDDMEKPTHAID 249 (266)
T ss_dssp HHHHHCCCCEECSTTSSHHHHHHHHHHTCCGGGEEEEESCTTTHHHHHHHHTCEEEEECCC------CCTTSCCCSEEES
T ss_pred HHHHhCCCccccCCCCHHHHHHHHHHcCCChhhEEEECCCcHHHHHHHHHCCCeEEEECCCCCChHHHHhcCCCCCEEeC
Confidence 4444555667789999999999999999999999999999 699999999999999999998 44555554 7999999
Q ss_pred CcccC
Q 001380 285 EIGSV 289 (1089)
Q Consensus 285 dl~el 289 (1089)
++.+|
T Consensus 250 ~~~el 254 (266)
T 3pdw_A 250 SLTEW 254 (266)
T ss_dssp SGGGG
T ss_pred CHHHH
Confidence 99998
|
| >3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-14 Score=152.45 Aligned_cols=103 Identities=9% Similarity=0.090 Sum_probs=87.0
Q ss_pred HHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhH
Q 001380 173 LINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGV 252 (1089)
Q Consensus 173 lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di 252 (1089)
+|+.|+++|++++|+|+.....++..++++|+. .+|+.+ ||++++++.+++++|+++++|+||||+.+|+
T Consensus 84 ~L~~L~~~G~~l~I~T~~~~~~~~~~l~~lgi~-~~f~~~---------k~K~~~l~~~~~~lg~~~~~~~~vGDs~nDi 153 (211)
T 3ij5_A 84 GIRCLITSDIDVAIITGRRAKLLEDRANTLGIT-HLYQGQ---------SDKLVAYHELLATLQCQPEQVAYIGDDLIDW 153 (211)
T ss_dssp HHHHHHHTTCEEEEECSSCCHHHHHHHHHHTCC-EEECSC---------SSHHHHHHHHHHHHTCCGGGEEEEECSGGGH
T ss_pred HHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCc-hhhccc---------CChHHHHHHHHHHcCcCcceEEEEcCCHHHH
Confidence 899999999999999999999999999999996 665533 8999999999999999999999999999999
Q ss_pred HHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccC
Q 001380 253 QAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 253 ~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el 289 (1089)
.+++++|+.++.. . ..+. ....+++++.+..+-
T Consensus 154 ~~~~~ag~~~a~~-~--~~~~-~~~~Ad~v~~~~~~~ 186 (211)
T 3ij5_A 154 PVMAQVGLSVAVA-D--AHPL-LLPKAHYVTRIKGGR 186 (211)
T ss_dssp HHHTTSSEEEECT-T--SCTT-TGGGSSEECSSCTTT
T ss_pred HHHHHCCCEEEeC-C--ccHH-HHhhCCEEEeCCCCC
Confidence 9999999764432 2 2222 234689999887554
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.4e-11 Score=138.17 Aligned_cols=253 Identities=14% Similarity=0.184 Sum_probs=159.0
Q ss_pred ecCCeEEEEeC-CCC---EEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC--------
Q 001380 610 ILNNRLFISDS-NHN---RIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT-------- 676 (1089)
Q Consensus 610 ~~~g~L~vsd~-~~~---~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~-------- 676 (1089)
+...++||+|. +.+ .|.++|.+ ++.+.++..+ ..| +++++|+|+++||++.
T Consensus 30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g---------------~~p-~i~~spDg~~lyv~n~~~~~~~rg 93 (373)
T 2mad_H 30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG---------------FLP-NPVAAHSGSEFALASTSFSRIAKG 93 (373)
T ss_pred CCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCC---------------CCC-CeEECCCCCEEEEEeccccccccC
Confidence 34578999997 555 88999986 6666555432 157 9999999999999985
Q ss_pred -CCCEEEEEECCCCeEE-EEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC-CcEEEEEECCCCeEEEE
Q 001380 677 -ENHALREIDFVNDTVR-TLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG-QHQIWEHSTVDGVTRAF 753 (1089)
Q Consensus 677 -~n~~I~~~d~~~g~v~-~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~-~~~I~~~~~~~g~~~~~ 753 (1089)
..+.|.+||..+.++. ++. .+.... ......|.+++++|+|++||+++.. .++|..+| .++++..-
T Consensus 94 ~~~~~v~viD~~t~~~~~~i~-~~~~~~---------~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~ 162 (373)
T 2mad_H 94 KRTDYVEVFDPVTFLPIADIE-LPDAPR---------FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQ 162 (373)
T ss_pred CCCCeEEEEECCCCcEEEEEE-CCCccc---------cccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeE
Confidence 2567999999765543 332 220000 0011479999999999999999875 68999999 88865433
Q ss_pred -eCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeE-EE------ecCCCCCCC------
Q 001380 754 -SGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR-LL------AGGDPIFPD------ 819 (1089)
Q Consensus 754 -~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~-~~------~g~~~~~~~------ 819 (1089)
.. -|.++.+.+++++.|++.+.++++..++. ++... .. .+..+....
T Consensus 163 ~i~------------------~~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~ 223 (373)
T 2mad_H 163 LLS------------------SPTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANK 223 (373)
T ss_pred EcC------------------CCceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEec
Confidence 21 12234445555566666666666666665 33322 10 111110000
Q ss_pred --C-cc-cc-C-----CC-CCc-c--c---------cccccCceE---EEEccCC-cEEEEeC---------CCCEEEEE
Q 001380 820 --N-LF-KF-G-----DR-DGM-G--S---------EVLLQHPLG---VYCAKNG-QIYVADS---------YNHKIKKL 863 (1089)
Q Consensus 820 --~-l~-~~-g-----~~-dg~-~--~---------~~~l~~P~g---va~~~~G-~lyVaD~---------~n~~I~~~ 863 (1089)
. +| .+ | +. .+. . . ...-..|.| ++++++| ++||+.. ..+.|.+|
T Consensus 224 ~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VI 303 (373)
T 2mad_H 224 SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV 303 (373)
T ss_pred CCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEE
Confidence 0 00 00 0 00 000 0 0 000112544 7888886 6999864 34689999
Q ss_pred eCCCCeE-EEEeccCCCCCCCCcccccccCCCceEEEccCCc--EEEEECCCCEEEEEeCCCC
Q 001380 864 DPASNRV-STLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN--LFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 864 d~~~~~v-~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~--lyVad~~n~~I~~~~~~~~ 923 (1089)
|.+++++ .++. .+ ..|.+|+++++|+ +|+++..++.|.++|..+.
T Consensus 304 D~~t~~vv~~i~-~g--------------~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 304 TGLVGQTSSQIS-LG--------------HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred ECCCCEEEEEEE-CC--------------CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 9998877 5553 22 2499999999997 7777778899999999887
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.49 E-value=6.5e-12 Score=141.84 Aligned_cols=265 Identities=16% Similarity=0.166 Sum_probs=174.0
Q ss_pred ceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEE
Q 001380 604 GKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALR 682 (1089)
Q Consensus 604 ~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~ 682 (1089)
.|+++.+ ++++|++....++|.++|.+ |+.+..+.... ...|.+++++++|+.+|+++..++.|+
T Consensus 3 ~g~~~~~-~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~-------------~~~~~~~~~s~dg~~~~v~~~~~~~i~ 68 (349)
T 1jmx_B 3 TGPALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD-------------KFGPGTAMMAPDNRTAYVLNNHYGDIY 68 (349)
T ss_dssp -CCCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEECSS-------------CCSSCEEEECTTSSEEEEEETTTTEEE
T ss_pred ccccccC-CCEEEEEeCCCCeEEEEECCCCcEEEEEecCC-------------CCCCceeEECCCCCEEEEEeCCCCcEE
Confidence 3566665 88999999999999999986 56666665431 125889999999998999999899999
Q ss_pred EEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC-----------CcEEEEEECCCCeEE
Q 001380 683 EIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG-----------QHQIWEHSTVDGVTR 751 (1089)
Q Consensus 683 ~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~-----------~~~I~~~~~~~g~~~ 751 (1089)
++|+.++.+......+... ...-..|++++++|+|+.||++... .+.|+.+|..++...
T Consensus 69 ~~d~~t~~~~~~~~~~~~~----------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 138 (349)
T 1jmx_B 69 GIDLDTCKNTFHANLSSVP----------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 138 (349)
T ss_dssp EEETTTTEEEEEEESCCST----------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred EEeCCCCcEEEEEEccccc----------ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence 9999888765443222100 0001358999999999999999854 578999987764321
Q ss_pred ----EEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEE-EecCCCCCC-----CCc
Q 001380 752 ----AFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRL-LAGGDPIFP-----DNL 821 (1089)
Q Consensus 752 ----~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~-~~g~~~~~~-----~~l 821 (1089)
.+.. -..+.+++++++|+ +|+++ +.|+.++..++.... +..+....+ +.+
T Consensus 139 ~~~~~~~~----------------~~~~~~~~~s~dg~-l~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (349)
T 1jmx_B 139 KPVRTFPM----------------PRQVYLMRAADDGS-LYVAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVL 198 (349)
T ss_dssp CCSEEEEC----------------CSSCCCEEECTTSC-EEEES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCC
T ss_pred ceeeeccC----------------CCcccceeECCCCc-EEEcc---CcEEEEeCCCCceeccccccccCCccccCccce
Confidence 1110 11477899999996 98864 349999988776543 222210000 000
Q ss_pred ccc--CCC--------------C---------------------Cccc----cccccCceEEEEcc-CCc-EEEEeCCCC
Q 001380 822 FKF--GDR--------------D---------------------GMGS----EVLLQHPLGVYCAK-NGQ-IYVADSYNH 858 (1089)
Q Consensus 822 ~~~--g~~--------------d---------------------g~~~----~~~l~~P~gva~~~-~G~-lyVaD~~n~ 858 (1089)
..+ +.. | +... ...-..|.++++++ +|+ +|++ .+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~---~~ 275 (349)
T 1jmx_B 199 YFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---LN 275 (349)
T ss_dssp CCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---ES
T ss_pred eeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE---cC
Confidence 000 000 0 0000 00012577888889 884 7777 67
Q ss_pred EEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEEEECCCCEEEEEeCCCCCceEEEEe
Q 001380 859 KIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADTNNNIIRYLDLNKEEPELQTLE 931 (1089)
Q Consensus 859 ~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~~n~~I~~~~~~~~~~~~~~l~ 931 (1089)
+|.++|..++.+......+ ..|.+++++++|+ ||++ ..++.|.++++.+. ..+..+.
T Consensus 276 ~v~~~d~~~~~~~~~~~~~--------------~~~~~~~~s~dg~~l~~~-~~~~~v~v~d~~~~-~~~~~~~ 333 (349)
T 1jmx_B 276 RLAKYDLKQRKLIKAANLD--------------HTYYCVAFDKKGDKLYLG-GTFNDLAVFNPDTL-EKVKNIK 333 (349)
T ss_dssp EEEEEETTTTEEEEEEECS--------------SCCCEEEECSSSSCEEEE-SBSSEEEEEETTTT-EEEEEEE
T ss_pred eEEEEECccCeEEEEEcCC--------------CCccceEECCCCCEEEEe-cCCCeEEEEecccc-ceeeeee
Confidence 9999999888764433221 2488999999885 7775 55699999999876 2445554
|
| >2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii} | Back alignment and structure |
|---|
Probab=99.48 E-value=7.8e-14 Score=134.62 Aligned_cols=94 Identities=13% Similarity=0.075 Sum_probs=82.0
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+|+|||+|||+||+||+.+.|.|.+++++|+++ +.|+-|.+ |...+++..|
T Consensus 40 ~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~-v~f~kVDV---------------------------De~~e~a~~y 91 (160)
T 2av4_A 40 DERLVCIRFGHDYDPDCMKMDELLYKVADDIKNF-CVIYLVDI---------------------------TEVPDFNTMY 91 (160)
T ss_dssp SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT-EEEEEEET---------------------------TTCCTTTTTT
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCC-cEEEEEEC---------------------------CCCHHHHHHc
Confidence 4689999999999999999999999999999764 78888865 6677899999
Q ss_pred CCCceeEEEEECCCCcEE--E-------EecCCCc-hhhHHHHHHHHHHHhcc
Q 001380 532 GVNSWPTFAVVGPNGKLL--A-------QLAGEGH-RKDLDDLVEAALLFYGK 574 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~--~-------~~~G~~~-~~~l~~~l~~~l~~~~~ 574 (1089)
+|+++||++++ ++|+.+ . +..|... .+++.+.|+..++...+
T Consensus 92 ~V~siPT~~fF-k~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r~a~~ 143 (160)
T 2av4_A 92 ELYDPVSVMFF-YRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRGARK 143 (160)
T ss_dssp TCCSSEEEEEE-ETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEE-ECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHHHhhc
Confidence 99999999988 788887 4 7888776 88999999998876654
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.4e-12 Score=146.52 Aligned_cols=227 Identities=13% Similarity=0.180 Sum_probs=145.0
Q ss_pred cCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecC---CCEEEE
Q 001380 656 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPI---NEKVYI 732 (1089)
Q Consensus 656 f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~---g~~lyv 732 (1089)
+..|.+|+++++|+ |||++.. ++|++++. +|. +.+...... ......|.||+++|+ ++.|||
T Consensus 28 l~~P~~ia~~pdG~-l~V~e~~-g~I~~~d~-~G~-~~~~~~~v~-----------~~g~~g~~gia~~pdf~~~g~lyv 92 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVTERP-GRLVLISP-SGK-KLVASFDVA-----------NVGEAGLLGLALHPEFPKKSWVYL 92 (354)
T ss_dssp CSCEEEEEEEETTE-EEEEETT-TEEEEECS-SCE-EEEEECCCC-----------CSTTCSEEEEEECTTTTTSCEEEE
T ss_pred CCCCeEEEEcCCCe-EEEEeCC-CEEEEEeC-CCc-eEeecccee-----------ecCCCceeeEEeCCCCCcCCEEEE
Confidence 67899999999997 9999986 89999985 555 555432210 011347999999998 679999
Q ss_pred EECC---C----cEEEEEECCCC--eE---EE-EeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCC------
Q 001380 733 AMAG---Q----HQIWEHSTVDG--VT---RA-FSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSE------ 793 (1089)
Q Consensus 733 ad~~---~----~~I~~~~~~~g--~~---~~-~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~------ 793 (1089)
++.. . ++|++++..++ .+ +. +.+-. ......|++|++++|| +|||++..
T Consensus 93 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~-----------~~~~h~~~~l~~~pDG-~Lyvt~G~~~~~~~ 160 (354)
T 3a9g_A 93 YASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIP-----------GAYIHNGGRIRFGPDG-MLYITTGDAADPRL 160 (354)
T ss_dssp EEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEE-----------CCSSCCCCCEEECTTS-CEEEECCCTTCGGG
T ss_pred EEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCC-----------CCCCcCCceEEECCCC-cEEEEECCCCCCcc
Confidence 9864 4 78999987765 11 11 11100 1224468999999999 89999632
Q ss_pred -------CCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEcc-CCcEEEEeCCCCE---EEE
Q 001380 794 -------SSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAK-NGQIYVADSYNHK---IKK 862 (1089)
Q Consensus 794 -------~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~-~G~lyVaD~~n~~---I~~ 862 (1089)
.++|.++++++. +..+.+.....++..| +.+|.|+++|+ +|+||++|...++ |.+
T Consensus 161 ~~d~~~~~G~I~ri~~dG~----~p~~npf~~~~i~a~G----------~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~ 226 (354)
T 3a9g_A 161 AQDLSSLAGKILRVDEEGR----PPADNPFPNSPIWSYG----------HRNPQGIDWHRASGVMVATEHGPVGHDEVNI 226 (354)
T ss_dssp GTCTTCCSSEEEEECTTSC----CCTTSSSTTCCEEEEC----------CSCCCEEEECTTTCCEEEEECCSSSCCEEEE
T ss_pred ccCCCCCCeEEEEEcCCCC----CCCCCCCCCCcEEEEc----------cCCcceEEEeCCCCCEEEEecCCCCCcEEEE
Confidence 368999988742 1111111111223333 56899999999 7999999998764 555
Q ss_pred EeCCCCeEE--EEeccCCCCCCCCcccc-cccCCCceEEE-------ccCCcEEEEECCCCEEEEEeCCCC
Q 001380 863 LDPASNRVS--TLAGIGKAGFKDGAALA-AQLSEPAGIIE-------AQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 863 ~d~~~~~v~--t~~g~g~~g~~~g~~~~-~~l~~P~gi~v-------d~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
+.+.++.-- ........++..-.... ..-..|.|+++ +.+|++||++...++|.++++++.
T Consensus 227 i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~ 297 (354)
T 3a9g_A 227 ILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDN 297 (354)
T ss_dssp ECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGG
T ss_pred ecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCC
Confidence 543211000 00000000010000000 12346999999 467899999999999999999864
|
| >2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-14 Score=141.07 Aligned_cols=117 Identities=17% Similarity=0.273 Sum_probs=89.8
Q ss_pred CCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhH---HHHHHHcCCCCEEEEEEeCCCCCChh
Q 001380 425 KTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDL---EFLEKKYKDMPFTVVGVHSAKFDNEK 501 (1089)
Q Consensus 425 ~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l---~~l~~~~~~~~v~vi~v~~~~~~~~~ 501 (1089)
..+..+|+|.. +.+.++....+ ++.+||++||+||++||++|+.+.|.+ .+++++++ ++.++.|+++.
T Consensus 5 ~~~~~~~~f~~-~~~~~~~~~~l-~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~--~~~~~~vd~~~----- 75 (134)
T 2fwh_A 5 AQTQTHLNFTQ-IKTVDELNQAL-VEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA--DTVLLQANVTA----- 75 (134)
T ss_dssp -----CCCCEE-CCSHHHHHHHH-HHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT--TSEEEEEECTT-----
T ss_pred cccccCCCcEE-ecCHHHHHHHH-HHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc--CcEEEEEeCCC-----
Confidence 45677888873 22334445556 667899999999999999999999999 89999886 48899996521
Q ss_pred cHHHHHHHHHHcCCccceeecCChhHHHHhCCCceeEEEEECCCCcEE--EEecCCCchhhHHHHHHHH
Q 001380 502 DLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLL--AQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 502 ~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~--~~~~G~~~~~~l~~~l~~~ 568 (1089)
. .|...++++.|+|.++|+++++|++|+++ .++.|..+.+++.++|+.+
T Consensus 76 ~------------------~~~~~~l~~~~~v~~~Pt~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~ 126 (134)
T 2fwh_A 76 N------------------DAQDVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDR 126 (134)
T ss_dssp C------------------CHHHHHHHHHTTCCSSSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC
T ss_pred C------------------cchHHHHHHHcCCCCCCEEEEECCCCCEeeeeeeeeccCHHHHHHHHHhc
Confidence 1 13356789999999999999999999998 7899999988888877654
|
| >3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-13 Score=126.99 Aligned_cols=87 Identities=29% Similarity=0.478 Sum_probs=74.2
Q ss_pred ccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 450 ~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
+.++|+|||+|||+||++|+.+.|.+.+++++++ ++.++.|.+ |...++++
T Consensus 17 ~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~---------------------------d~~~~l~~ 67 (105)
T 3zzx_A 17 EAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMS--DVVFLKVDV---------------------------DECEDIAQ 67 (105)
T ss_dssp HTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCT--TEEEEEEET---------------------------TTCHHHHH
T ss_pred hcCCCEEEEEEECCCCCCccCCCcchhhhhhccC--CeEEEEEec---------------------------ccCHHHHH
Confidence 3467999999999999999999999999999987 477888854 55678999
Q ss_pred HhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHH
Q 001380 530 ELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEA 567 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~ 567 (1089)
.|+|.++||++++ ++|+++.++.|. +.+++.++|++
T Consensus 68 ~~~V~~~PT~~~~-~~G~~v~~~~G~-~~~~l~~~i~k 103 (105)
T 3zzx_A 68 DNQIACMPTFLFM-KNGQKLDSLSGA-NYDKLLELVEK 103 (105)
T ss_dssp HTTCCBSSEEEEE-ETTEEEEEEESC-CHHHHHHHHHH
T ss_pred HcCCCeecEEEEE-ECCEEEEEEeCc-CHHHHHHHHHh
Confidence 9999999998888 899999999995 66666666653
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-11 Score=141.43 Aligned_cols=221 Identities=14% Similarity=0.180 Sum_probs=148.7
Q ss_pred CCcceeEEeeCCCEEEEEECC---CCEEEEE--ECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEE
Q 001380 657 NRPQGLAYNAKKNLLYVADTE---NHALREI--DFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVY 731 (1089)
Q Consensus 657 ~~P~gla~d~~g~~lyVaD~~---n~~I~~~--d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~ly 731 (1089)
..|.+++++|+|+.||+++.. ++.|..+ +.++|.++.+...... -..|..+++ +++.||
T Consensus 50 ~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~--------------~~~p~~~~~--dg~~l~ 113 (361)
T 3scy_A 50 ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTM--------------GADPCYLTT--NGKNIV 113 (361)
T ss_dssp SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECS--------------SSCEEEEEE--CSSEEE
T ss_pred CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccC--------------CCCcEEEEE--CCCEEE
Confidence 479999999999999999873 4677554 5555776665421110 136888998 677999
Q ss_pred EEECCCcEEEEEECCC-CeEEE----EeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCC
Q 001380 732 IAMAGQHQIWEHSTVD-GVTRA----FSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGG 806 (1089)
Q Consensus 732 vad~~~~~I~~~~~~~-g~~~~----~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~ 806 (1089)
+++...+.|..|+... +.+.. +.-.+ .+..+.......|++++++|+|+.||+++.+.++|+.++.+...
T Consensus 114 ~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-----~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~ 188 (361)
T 3scy_A 114 TANYSGGSITVFPIGQDGALLPASDVIEFKG-----SGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNA 188 (361)
T ss_dssp EEETTTTEEEEEEBCTTSCBCSCSEEEECCC-----CCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTC
T ss_pred EEECCCCEEEEEEeCCCCcCcccceeEEccC-----CCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCC
Confidence 9999889999888753 32211 11111 01111112234678999999998899999999999988766432
Q ss_pred -------eEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEEEeCCCCEEEEEeCCCCeEEEEeccCC
Q 001380 807 -------SRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADSYNHKIKKLDPASNRVSTLAGIGK 878 (1089)
Q Consensus 807 -------~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~~n~~I~~~d~~~~~v~t~~g~g~ 878 (1089)
.... +.. ..... ..-..|.+++++++|+ +|+++..+++|.+++.+++.+..+.....
T Consensus 189 ~~~~~~~l~~~-~~~-----~~~~~---------~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~ 253 (361)
T 3scy_A 189 NADNKEKFLTK-GTP-----EAFKV---------APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAA 253 (361)
T ss_dssp CTTTCCCCEEE-EEE-----EEEEC---------CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEES
T ss_pred Ccccccceeec-ccc-----cceec---------CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEec
Confidence 1110 000 00000 0023588999999995 99999889999999987777655432110
Q ss_pred CCCCCCcccccccCCCceEEEccCCc-EEEEECC-CCEEEEEeCC
Q 001380 879 AGFKDGAALAAQLSEPAGIIEAQNGN-LFIADTN-NNIIRYLDLN 921 (1089)
Q Consensus 879 ~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~~-n~~I~~~~~~ 921 (1089)
. ......|.+++++++|+ ||+++.. +++|.+++++
T Consensus 254 ~--------~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 254 D--------TVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp C--------SSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred C--------CCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence 0 11345688999999996 8999998 8999998886
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-11 Score=147.17 Aligned_cols=256 Identities=12% Similarity=0.108 Sum_probs=181.7
Q ss_pred CceEEEeecCCeEEEEeCCCCEEEEEeC---CCCEEEEEecCCCCCCCCCCCCccccCCcceeEEee----CCCEEEEEE
Q 001380 603 PGKLAIDILNNRLFISDSNHNRIVVTDL---DGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNA----KKNLLYVAD 675 (1089)
Q Consensus 603 P~~vavd~~~g~L~vsd~~~~~I~~~~~---~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~----~g~~lyVaD 675 (1089)
|.++++++.+..||+++.. +.|.++|. .++.+.++..+ ..|.+++++| +|+++|+++
T Consensus 181 ~~~v~~spdg~~l~v~~~d-~~V~v~D~~~~t~~~~~~i~~g---------------~~p~~va~sp~~~~dg~~l~v~~ 244 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRD-ARIDMIDLWAKEPTKVAEIKIG---------------IEARSVESSKFKGYEDRYTIAGA 244 (543)
T ss_dssp EEEEEECTTSCEEEEEETT-SEEEEEETTSSSCEEEEEEECC---------------SEEEEEEECCSTTCTTTEEEEEE
T ss_pred cceEEECCCCCEEEEECCC-CeEEEEECcCCCCcEEEEEecC---------------CCcceEEeCCCcCCCCCEEEEEE
Confidence 7789999988889999987 99999998 36666666532 2689999999 999999999
Q ss_pred CCCCEEEEEECCCCeEE-EEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeE---E
Q 001380 676 TENHALREIDFVNDTVR-TLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVT---R 751 (1089)
Q Consensus 676 ~~n~~I~~~d~~~g~v~-~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~---~ 751 (1089)
...+.|..+|..++++. ++...+..... ....+-..+.+++++++++.+|++....++|+.+|..++.. .
T Consensus 245 ~~~~~v~v~D~~t~~~~~~i~~~g~~~~~------~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~ 318 (543)
T 1nir_A 245 YWPPQFAIMDGETLEPKQIVSTRGMTVDT------QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT 318 (543)
T ss_dssp EESSEEEEEETTTCCEEEEEECCEECSSS------CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEE
T ss_pred ccCCeEEEEeccccccceeecccCcccCc------cccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeE
Confidence 88899999998876644 44322211000 00011126789999999999999999999999999876432 2
Q ss_pred EEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEE-EecCCCCCCCCccccCCCCCc
Q 001380 752 AFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRL-LAGGDPIFPDNLFKFGDRDGM 830 (1089)
Q Consensus 752 ~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~-~~g~~~~~~~~l~~~g~~dg~ 830 (1089)
.+. . -..|.+++++|+|+++|++...+++|..++..++.... +..+.
T Consensus 319 ~i~-~---------------~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~---------------- 366 (543)
T 1nir_A 319 SIG-A---------------APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK---------------- 366 (543)
T ss_dssp EEE-C---------------CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS----------------
T ss_pred Eec-c---------------CcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCC----------------
Confidence 222 1 13588999999998899999999999999998876543 22110
Q ss_pred cccccccCc-eEEE-EccC-CcEEEEeC-CCCEEEEEeCCC--------CeEEEEeccCCCCCCCCcccccccCCCceEE
Q 001380 831 GSEVLLQHP-LGVY-CAKN-GQIYVADS-YNHKIKKLDPAS--------NRVSTLAGIGKAGFKDGAALAAQLSEPAGII 898 (1089)
Q Consensus 831 ~~~~~l~~P-~gva-~~~~-G~lyVaD~-~n~~I~~~d~~~--------~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~ 898 (1089)
..|| .++. ++++ |.+|++.. +.+.|.++|.++ ..+.++.+.+ ..+..|+
T Consensus 367 -----~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g--------------~~~~~v~ 427 (543)
T 1nir_A 367 -----TPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG--------------GGSLFIK 427 (543)
T ss_dssp -----SBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC--------------SCCCCEE
T ss_pred -----CCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCC--------------CCceEEE
Confidence 1133 2333 3566 78999886 678999999865 4556665432 2267799
Q ss_pred EccCCc-EEEEECC------CCEEEEEeCCCCCceEEEEe
Q 001380 899 EAQNGN-LFIADTN------NNIIRYLDLNKEEPELQTLE 931 (1089)
Q Consensus 899 vd~~G~-lyVad~~------n~~I~~~~~~~~~~~~~~l~ 931 (1089)
+.++|+ |||.... ++.|.+|+.++.....+++.
T Consensus 428 ~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~ 467 (543)
T 1nir_A 428 THPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLP 467 (543)
T ss_dssp CCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEEC
T ss_pred cCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEee
Confidence 999986 6665432 45999999987743224443
|
| >3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A | Back alignment and structure |
|---|
Probab=99.47 E-value=4.5e-14 Score=145.83 Aligned_cols=102 Identities=12% Similarity=0.146 Sum_probs=85.8
Q ss_pred HHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhH
Q 001380 173 LINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGV 252 (1089)
Q Consensus 173 lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di 252 (1089)
+|+.|+++|++++|+||.....++..++++|+. .+|+.+ ++|++.++.+++++|+++++|+||||+.+|+
T Consensus 54 ~l~~L~~~g~~~~i~T~~~~~~~~~~~~~lgl~-~~f~~~---------~~K~~~~~~~~~~~g~~~~~~~~vGD~~nDi 123 (189)
T 3mn1_A 54 GIKMLIASGVTTAIISGRKTAIVERRAKSLGIE-HLFQGR---------EDKLVVLDKLLAELQLGYEQVAYLGDDLPDL 123 (189)
T ss_dssp HHHHHHHTTCEEEEECSSCCHHHHHHHHHHTCS-EEECSC---------SCHHHHHHHHHHHHTCCGGGEEEEECSGGGH
T ss_pred HHHHHHHCCCEEEEEECcChHHHHHHHHHcCCH-HHhcCc---------CChHHHHHHHHHHcCCChhHEEEECCCHHHH
Confidence 889999999999999999999999999999996 666543 7778999999999999999999999999999
Q ss_pred HHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCccc
Q 001380 253 QAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGS 288 (1089)
Q Consensus 253 ~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~e 288 (1089)
.+++++|+.++ .+...+... ..+++++.+..+
T Consensus 124 ~~~~~ag~~~~---~~~~~~~~~-~~ad~v~~~~~~ 155 (189)
T 3mn1_A 124 PVIRRVGLGMA---VANAASFVR-EHAHGITRAQGG 155 (189)
T ss_dssp HHHHHSSEEEE---CTTSCHHHH-HTSSEECSSCTT
T ss_pred HHHHHCCCeEE---eCCccHHHH-HhCCEEecCCCC
Confidence 99999997643 232333333 368999988543
|
| >3bwv_A Putative 5'(3')-deoxyribonucleotidase; NP_764060.1, deoxyribonucleotidase-like protein; HET: MSE; 1.55A {Staphylococcus epidermidis} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-13 Score=139.11 Aligned_cols=166 Identities=13% Similarity=0.124 Sum_probs=111.7
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH-
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLD- 156 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 156 (1089)
+.++|+||+||||+|++..+..++.+ .+|...+.+++. +.+..... +. .. +++.+.+..
T Consensus 3 m~~~viFD~DGtL~Ds~~~~~~~~~~---~~g~~~~~~~~~---g~~~~~~~-------~~---~~----~~~~~~~~~~ 62 (180)
T 3bwv_A 3 TRQRIAIDMDEVLADTLGAVVKAVNE---RADLNIKMESLN---GKKLKHMI-------PE---HE----GLVMDILKEP 62 (180)
T ss_dssp CCCEEEEETBTTTBCHHHHHHHHHHH---HSCCCCCGGGCT---TCCC----------------------CHHHHHHHST
T ss_pred cccEEEEeCCCcccccHHHHHHHHHH---HhCCCCCHHHHc---CccHHHHC-------Cc---hH----HHHHHHHhCc
Confidence 35899999999999999988888776 678776655542 22222111 10 01 122222211
Q ss_pred HhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCC---Ch--HhHHHHHHH-CCCCCCCccEEEEcCCccCCCCCHHHHHH
Q 001380 157 KYAKPNSGIGFPGALELINQCKSKGLKVAVASSA---DR--IKVDANLAA-AGLPVSMFDAIVSADAFENLKPAPDIFLS 230 (1089)
Q Consensus 157 ~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~---~~--~~~~~~l~~-~gl~~~~fd~i~~~~~~~~~KP~~~~~~~ 230 (1089)
.+.. ...++||+.++|+.|+++ ++++|+||. .. ......+++ ++.. .+++.++++++.
T Consensus 63 ~~~~--~~~~~pg~~e~L~~L~~~-~~~~i~T~~~~~~~~~~~~~~~l~~~f~~~-~~~~~i~~~~~~------------ 126 (180)
T 3bwv_A 63 GFFR--NLDVMPHAQEVVKQLNEH-YDIYIATAAMDVPTSFHDKYEWLLEYFPFL-DPQHFVFCGRKN------------ 126 (180)
T ss_dssp TGGG--SCCBCTTHHHHHHHHTTT-SEEEEEECC--CCSHHHHHHHHHHHHCTTS-CGGGEEECSCGG------------
T ss_pred chhc--cCCCCcCHHHHHHHHHhc-CCEEEEeCCCCcchHHHHHHHHHHHHcCCC-CcccEEEeCCcC------------
Confidence 1211 237899999999999995 999999997 32 222444555 6774 778899988762
Q ss_pred HHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHH
Q 001380 231 ASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDIL 295 (1089)
Q Consensus 231 ~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll 295 (1089)
++ ++|+||||+.+|+. .++| ++++|.++.... ..+++++.++.++ ..++
T Consensus 127 ---~l----~~~l~ieDs~~~i~--~aaG-~~i~~~~~~~~~----~~~~~~i~~~~el--~~~l 175 (180)
T 3bwv_A 127 ---II----LADYLIDDNPKQLE--IFEG-KSIMFTASHNVY----EHRFERVSGWRDV--KNYF 175 (180)
T ss_dssp ---GB----CCSEEEESCHHHHH--HCSS-EEEEECCGGGTT----CCSSEEECSHHHH--HHHH
T ss_pred ---ee----cccEEecCCcchHH--HhCC-CeEEeCCCcccC----CCCceecCCHHHH--HHHH
Confidence 12 77999999999985 5689 999998764321 4688999999887 4554
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-11 Score=138.47 Aligned_cols=208 Identities=18% Similarity=0.203 Sum_probs=141.5
Q ss_pred CCCCceEEEeecCCeEEEEe------------CCCCEEEEEeCCC--CEEEEEecCCCCCCCCCCCCccccCCcceeEEe
Q 001380 600 LKFPGKLAIDILNNRLFISD------------SNHNRIVVTDLDG--NFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYN 665 (1089)
Q Consensus 600 l~~P~~vavd~~~g~L~vsd------------~~~~~I~~~~~~g--~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d 665 (1089)
...|..|++++ +|.+|++- ...++|+++|++. .....+...+. .+.+.. -+|+||.+.
T Consensus 49 ~~G~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~------~~~~~~-f~PhGi~~~ 120 (355)
T 3sre_A 49 DNGSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGN------TLDISS-FNPHGISTF 120 (355)
T ss_dssp CSCCCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECS------SCCGGG-CCEEEEEEE
T ss_pred CCCcceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCC------CCCcCc-eeeeeeEEE
Confidence 35799999997 89999996 2578999999872 12223222110 011222 389999997
Q ss_pred e--CCC-EEEEEECC--CCE--EEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC---
Q 001380 666 A--KKN-LLYVADTE--NHA--LREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA--- 735 (1089)
Q Consensus 666 ~--~g~-~lyVaD~~--n~~--I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~--- 735 (1089)
+ +|. +|||++.. ++. |.+++.+++....+.... ...+++|+|++++++| .+|+++.
T Consensus 121 ~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~-------------g~~~~~pND~~v~~~G-~fyvt~~~~f 186 (355)
T 3sre_A 121 IDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR-------------HKLLPSVNDIVAVGPE-HFYATNDHYF 186 (355)
T ss_dssp ECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC-------------CTTCSSEEEEEEEETT-EEEEEESCSC
T ss_pred ECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc-------------cCCCCCCceEEEeCCC-CEEecCCcEe
Confidence 7 343 69999876 344 556776666554443211 1347899999999988 8999875
Q ss_pred --------------CCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEE
Q 001380 736 --------------GQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALN 801 (1089)
Q Consensus 736 --------------~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~ 801 (1089)
..++|+++++. .++.+. ..+..|+||+++||++.|||+|+..++|++++
T Consensus 187 td~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~---------------~~l~~pNGia~spDg~~lYvadt~~~~I~~~~ 249 (355)
T 3sre_A 187 IDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVA---------------EGFDFANGINISPDGKYVYIAELLAHKIHVYE 249 (355)
T ss_dssp SSHHHHHHHHHTTCCCEEEEEECTT--CCEEEE---------------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred CCcccccchhhccCCccEEEEEECC--eEEEee---------------cCCcccCcceECCCCCEEEEEeCCCCeEEEEE
Confidence 24678888873 444443 44678999999999999999999999999999
Q ss_pred cCCCC-eEEEecCCCCCCCCccccCCCCCccccccccCceEEEEcc-CCcEEEEeC-CCCEEEEEeCC
Q 001380 802 LKTGG-SRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAK-NGQIYVADS-YNHKIKKLDPA 866 (1089)
Q Consensus 802 ~~~~~-~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~-~G~lyVaD~-~n~~I~~~d~~ 866 (1089)
.+..+ .... ..|.+ -..|.|+++|+ +|++|||.. ...+|.+++|+
T Consensus 250 ~~~~g~l~~~---------~~~~~-----------~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 250 KHANWTLTPL---------RVLSF-----------DTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp ECTTSCEEEE---------EEEEC-----------SSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred ECCCCcEecC---------EEEeC-----------CCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 86422 2111 01111 13699999999 599999764 54567777765
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.3e-11 Score=139.89 Aligned_cols=243 Identities=17% Similarity=0.215 Sum_probs=181.2
Q ss_pred CCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCE
Q 001380 602 FPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHA 680 (1089)
Q Consensus 602 ~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~ 680 (1089)
.|..+++++ ++++|++....+.|.++|.+ |+.+..+..... ........+++++++|+ +|++...++.
T Consensus 124 ~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~-~~~s~~~d~~ 192 (433)
T 3bws_A 124 QPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKY---------KKKLGFVETISIPEHNE-LWVSQMQANA 192 (433)
T ss_dssp CBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHH---------HTTCCEEEEEEEGGGTE-EEEEEGGGTE
T ss_pred CceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccc---------cccCCceeEEEEcCCCE-EEEEECCCCE
Confidence 466789998 99999999888899999987 666543322100 01123457789988776 8899888899
Q ss_pred EEEEECCCCeE-EEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCcc
Q 001380 681 LREIDFVNDTV-RTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYE 759 (1089)
Q Consensus 681 I~~~d~~~g~v-~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~ 759 (1089)
|+.+|.+++.. .++...+ ..+.+++++++++.+|++....+.|+.||..++........
T Consensus 193 v~~~d~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--- 252 (433)
T 3bws_A 193 VHVFDLKTLAYKATVDLTG-----------------KWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK--- 252 (433)
T ss_dssp EEEEETTTCCEEEEEECSS-----------------SSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC---
T ss_pred EEEEECCCceEEEEEcCCC-----------------CCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC---
Confidence 99999987554 4443211 36889999999999999998889999999988766443211
Q ss_pred ccCCCCCCCCccccCCceEEEcCCCCEEEEEeC-------CCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccc
Q 001380 760 RNLNGSSSLNTSFAQPSGISLSPDFMEIYVADS-------ESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGS 832 (1089)
Q Consensus 760 ~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~-------~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~ 832 (1089)
-..|.+++++++|+.||++.. ..+.|+.+++.++........
T Consensus 253 ------------~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~------------------- 301 (433)
T 3bws_A 253 ------------IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP------------------- 301 (433)
T ss_dssp ------------CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE-------------------
T ss_pred ------------CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC-------------------
Confidence 123789999999989999885 456899999886654332210
Q ss_pred cccccCceEEEEccCC-cEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEEEEC
Q 001380 833 EVLLQHPLGVYCAKNG-QIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADT 910 (1089)
Q Consensus 833 ~~~l~~P~gva~~~~G-~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~ 910 (1089)
-..|.+++++++| .+|++....++|+.+|..++.+...... ...|.+++++++|+ ||++..
T Consensus 302 ---~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~--------------~~~~~~~~~s~dg~~l~~~~~ 364 (433)
T 3bws_A 302 ---PGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPV--------------FDKPNTIALSPDGKYLYVSCR 364 (433)
T ss_dssp ---EECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEEC--------------SSSEEEEEECTTSSEEEEEEC
T ss_pred ---CCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecC--------------CCCCCeEEEcCCCCEEEEEec
Confidence 1257889999999 5999999999999999988766544322 23488999999986 888887
Q ss_pred CC--------------CEEEEEeCCCC
Q 001380 911 NN--------------NIIRYLDLNKE 923 (1089)
Q Consensus 911 ~n--------------~~I~~~~~~~~ 923 (1089)
.+ +.|.++++.+.
T Consensus 365 ~~~~~~~~~~~~g~~dg~v~~~d~~~~ 391 (433)
T 3bws_A 365 GPNHPTEGYLKKGLVLGKVYVIDTTTD 391 (433)
T ss_dssp CCCCTTTCTTSCCSSCCEEEEEETTTT
T ss_pred CCCccccccccccccceEEEEEECCCC
Confidence 64 49999999776
|
| >3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.6e-14 Score=142.81 Aligned_cols=124 Identities=18% Similarity=0.290 Sum_probs=81.7
Q ss_pred eecccccCCCEEEEEEecCCCcchhhhhhhH---HHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcC--Cccce
Q 001380 445 LQFRRDLKGKVVVLDFWTYCCINCMHVLPDL---EFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYG--ISHPV 519 (1089)
Q Consensus 445 ~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l---~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~--~~~~v 519 (1089)
+.+ +..+||+|||+|||+||++|+.+.+.+ .++.+.+++ ++.++.|++++.. .......+ ...+ ..+..
T Consensus 40 ~~~-a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~-~~~~v~v~~d~~~---~~~~~~~~-~~~~~~~~~~~ 113 (172)
T 3f9u_A 40 MEY-ARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINN-DYVLITLYVDNKT---PLTEPVKI-MENGTERTLRT 113 (172)
T ss_dssp HHH-HHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHH-HCEEEEEETTCCC---EEEEEEEE-EETTEEEEEEE
T ss_pred HHH-HHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC-CEEEEEEecCccc---ccchhhhh-hhcchhhhhhh
Confidence 444 556899999999999999999863222 344444432 5899999763211 00000000 0000 00111
Q ss_pred eecCChhH-HHHhCCCceeEEEEECCCCcEEEEecCCCc-hhhHHHHHHHHHHHhcc
Q 001380 520 VNDGDMNL-WRELGVNSWPTFAVVGPNGKLLAQLAGEGH-RKDLDDLVEAALLFYGK 574 (1089)
Q Consensus 520 ~~d~~~~l-~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~-~~~l~~~l~~~l~~~~~ 574 (1089)
+.+....+ ++.|+|.++|++++||++|+++.++.|... .+.+.++|+++++.+++
T Consensus 114 ~~~~~~~~~~~~~~v~~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~l~~~~~ 170 (172)
T 3f9u_A 114 VGDKWSYLQRVKFGANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTGLENYRK 170 (172)
T ss_dssp HHHHHHHHHHHHHSCCCSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHcCCCCcceEEEECCCCCEEeeccCCCCCHHHHHHHHHHHHHHhhc
Confidence 11222222 688999999999999999999999999988 99999999999988764
|
| >2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.6e-14 Score=140.58 Aligned_cols=110 Identities=17% Similarity=0.242 Sum_probs=87.5
Q ss_pred CceeecccccCCCEEEEEEe-cCCCcchhhhhhhH---HHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCcc
Q 001380 442 TAPLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDL---EFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISH 517 (1089)
Q Consensus 442 g~~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l---~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (1089)
++.+++ ++.+||++||+|| ++||++|+.++|.| .++.+.+. .++.++.|+.++.. ++++
T Consensus 37 ~~~~~~-a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~-~~~~~v~vd~~~~~---------------~~~~ 99 (154)
T 2ju5_A 37 AEALEH-SKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAG-VHLHMVEVDFPQKN---------------HQPE 99 (154)
T ss_dssp HHHHHH-HHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHH-HHCEEEEEECCSSC---------------CCCH
T ss_pred HHHHHH-HHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhc-CcEEEEEecCcccc---------------CCCh
Confidence 456666 6778999999999 99999999999999 77766553 35889999763211 2334
Q ss_pred ceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCC--chhhHHHHHHHHHH
Q 001380 518 PVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEG--HRKDLDDLVEAALL 570 (1089)
Q Consensus 518 ~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~--~~~~l~~~l~~~l~ 570 (1089)
++ .|.+.++++.|+|.++|+++++|++|+++.++ |.. +.+.+.+.|+.+++
T Consensus 100 ~~-~~~~~~l~~~~~v~~~Pt~~~~d~~G~~~~~~-G~~~~~~~~l~~~l~~~l~ 152 (154)
T 2ju5_A 100 EQ-RQKNQELKAQYKVTGFPELVFIDAEGKQLARM-GFEPGGGAAYVSKVKSALK 152 (154)
T ss_dssp HH-HHHHHHHHHHTTCCSSSEEEEECTTCCEEEEE-CCCTTCHHHHHHHHHHHHT
T ss_pred hh-HhhHHHHHHHcCCCCCCEEEEEcCCCCEEEEe-cCCCCCHHHHHHHHHHHHh
Confidence 32 35667899999999999999999999999999 988 78888888877664
|
| >3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.7e-13 Score=141.75 Aligned_cols=104 Identities=12% Similarity=0.183 Sum_probs=86.4
Q ss_pred HHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhh
Q 001380 172 ELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAG 251 (1089)
Q Consensus 172 ~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~D 251 (1089)
..|+.|+++|++++|+||.....++..++++|+. .+|+. .||++..++.+++++|+++++|+||||+.+|
T Consensus 59 ~~l~~L~~~G~~~~ivT~~~~~~~~~~l~~lgi~-~~~~~---------~k~k~~~~~~~~~~~~~~~~~~~~vGD~~nD 128 (195)
T 3n07_A 59 YGVKALMNAGIEIAIITGRRSQIVENRMKALGIS-LIYQG---------QDDKVQAYYDICQKLAIAPEQTGYIGDDLID 128 (195)
T ss_dssp HHHHHHHHTTCEEEEECSSCCHHHHHHHHHTTCC-EEECS---------CSSHHHHHHHHHHHHCCCGGGEEEEESSGGG
T ss_pred HHHHHHHHCCCEEEEEECcCHHHHHHHHHHcCCc-EEeeC---------CCCcHHHHHHHHHHhCCCHHHEEEEcCCHHH
Confidence 3588999999999999999999999999999996 55432 3999999999999999999999999999999
Q ss_pred HHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccC
Q 001380 252 VQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 252 i~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el 289 (1089)
+.+++++|+.++ .+...+.++ ..+++++.+..+-
T Consensus 129 i~~~~~ag~~va---~~na~~~~~-~~ad~v~~~~~~~ 162 (195)
T 3n07_A 129 WPVMEKVALRVC---VADGHPLLA-QRANYVTHIKGGH 162 (195)
T ss_dssp HHHHTTSSEEEE---CTTSCHHHH-HHCSEECSSCTTT
T ss_pred HHHHHHCCCEEE---ECChHHHHH-HhCCEEEcCCCCC
Confidence 999999996543 333333433 3689998876554
|
| >3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0 | Back alignment and structure |
|---|
Probab=99.43 E-value=6.2e-14 Score=144.97 Aligned_cols=103 Identities=15% Similarity=0.220 Sum_probs=86.5
Q ss_pred HHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhH
Q 001380 173 LINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGV 252 (1089)
Q Consensus 173 lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di 252 (1089)
.|+.|+++|++++|+||.....++..++.+|+. .+|+.+ ||++++++.+++++|+++++++||||+.+|+
T Consensus 54 ~l~~L~~~g~~~~ivTn~~~~~~~~~l~~lgl~-~~~~~~---------kpk~~~~~~~~~~~~~~~~~~~~vGD~~~Di 123 (191)
T 3n1u_A 54 GLKLLMAAGIQVAIITTAQNAVVDHRMEQLGIT-HYYKGQ---------VDKRSAYQHLKKTLGLNDDEFAYIGDDLPDL 123 (191)
T ss_dssp HHHHHHHTTCEEEEECSCCSHHHHHHHHHHTCC-EEECSC---------SSCHHHHHHHHHHHTCCGGGEEEEECSGGGH
T ss_pred HHHHHHHCCCeEEEEeCcChHHHHHHHHHcCCc-cceeCC---------CChHHHHHHHHHHhCCCHHHEEEECCCHHHH
Confidence 588899999999999999999999999999996 655433 9999999999999999999999999999999
Q ss_pred HHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccC
Q 001380 253 QAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 253 ~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el 289 (1089)
.+++++|+.++ +.. ..+.+. ..+++++.+..+-
T Consensus 124 ~~~~~ag~~~~-~~~--~~~~~~-~~ad~v~~~~~~~ 156 (191)
T 3n1u_A 124 PLIQQVGLGVA-VSN--AVPQVL-EFADWRTERTGGR 156 (191)
T ss_dssp HHHHHSSEEEE-CTT--CCHHHH-HHSSEECSSCTTT
T ss_pred HHHHHCCCEEE-eCC--ccHHHH-HhCCEEecCCCCC
Confidence 99999998763 322 223333 3689999886544
|
| >3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.7e-13 Score=127.93 Aligned_cols=88 Identities=24% Similarity=0.397 Sum_probs=78.2
Q ss_pred ccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 450 ~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
+.++|++||+||++||++|+.+.|.|.+++++|++ +.++.|++ |.+.++++
T Consensus 28 ~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~--v~~~~vd~---------------------------d~~~~l~~ 78 (116)
T 3qfa_C 28 AAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN--VIFLEVDV---------------------------DDCQDVAS 78 (116)
T ss_dssp HHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT--SEEEEEET---------------------------TTTHHHHH
T ss_pred hcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC--CEEEEEEC---------------------------CCCHHHHH
Confidence 34789999999999999999999999999999875 88888865 45678999
Q ss_pred HhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 530 ELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
.|+|.++|+++++ ++|+++.++.|. +.+.+.++|+++
T Consensus 79 ~~~v~~~Pt~~~~-~~G~~~~~~~G~-~~~~l~~~l~~~ 115 (116)
T 3qfa_C 79 ECEVKSMPTFQFF-KKGQKVGEFSGA-NKEKLEATINEL 115 (116)
T ss_dssp HTTCCSSSEEEEE-SSSSEEEEEESC-CHHHHHHHHHHH
T ss_pred HcCCccccEEEEE-eCCeEEEEEcCC-CHHHHHHHHHHh
Confidence 9999999999999 899999999998 888888888765
|
| >3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A | Back alignment and structure |
|---|
Probab=99.42 E-value=2.9e-13 Score=133.80 Aligned_cols=93 Identities=19% Similarity=0.144 Sum_probs=82.2
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+|+|||+|||+||++|+.+.|.|.+++++|+++ +.++.|++ |...++++.|
T Consensus 22 ~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~-~~~~~vd~---------------------------d~~~~l~~~~ 73 (149)
T 3gix_A 22 AEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKM-AAIYLVDV---------------------------DQTAVYTQYF 73 (149)
T ss_dssp CSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTT-EEEEEEET---------------------------TTCCHHHHHT
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCc-eEEEEEEC---------------------------CcCHHHHHHc
Confidence 5899999999999999999999999999999765 88898864 5567899999
Q ss_pred CCCceeEEEEECCCCcEE---------EEecC-CCchhhHHHHHHHHHHHhc
Q 001380 532 GVNSWPTFAVVGPNGKLL---------AQLAG-EGHRKDLDDLVEAALLFYG 573 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~---------~~~~G-~~~~~~l~~~l~~~l~~~~ 573 (1089)
+|.++|+++ ++++|+++ .++.| ..+.+++.++|+.+++..+
T Consensus 74 ~v~~~Pt~~-~~~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~~~~ 124 (149)
T 3gix_A 74 DISYIPSTV-FFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGAM 124 (149)
T ss_dssp TCCSSSEEE-EEETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHHHHH
T ss_pred CCCccCeEE-EEECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHHHhh
Confidence 999999999 55899999 78888 7888999999999887654
|
| >3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.41 E-value=7.2e-13 Score=130.95 Aligned_cols=114 Identities=18% Similarity=0.242 Sum_probs=94.4
Q ss_pred CCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHH
Q 001380 426 TTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEA 505 (1089)
Q Consensus 426 ~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~ 505 (1089)
.+.++++.. ..++++..+.. ...++|++||+||++||++|+.+.|.|++++++++++ +.++.|++
T Consensus 31 ~~~~~~~~~--v~~l~~~~~~~-~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~-~~~~~vd~----------- 95 (148)
T 3p2a_A 31 CGHSLFDGE--VINATAETLDK-LLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGK-VRFVKVNT----------- 95 (148)
T ss_dssp TCCBTTCCC--CEECCTTTHHH-HTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTT-CEEEEEET-----------
T ss_pred cCCccccCC--ceecCHHHHHH-HHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCc-eEEEEEEC-----------
Confidence 344555544 44556666654 3457899999999999999999999999999999764 88888865
Q ss_pred HHHHHHHcCCccceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHH
Q 001380 506 IRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLF 571 (1089)
Q Consensus 506 ~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~ 571 (1089)
|.+.++++.|+|.++|+++++ ++|+++.++.|..+.+.+.++|+++++.
T Consensus 96 ----------------~~~~~l~~~~~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~~ 144 (148)
T 3p2a_A 96 ----------------EAEPALSTRFRIRSIPTIMLY-RNGKMIDMLNGAVPKAPFDNWLDEQLSR 144 (148)
T ss_dssp ----------------TTCHHHHHHTTCCSSSEEEEE-ETTEEEEEESSCCCHHHHHHHHHHHHHS
T ss_pred ----------------cCCHHHHHHCCCCccCEEEEE-ECCeEEEEEeCCCCHHHHHHHHHHHhcc
Confidence 456689999999999999999 7999999999999999999999988763
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=7.9e-12 Score=142.18 Aligned_cols=261 Identities=13% Similarity=0.028 Sum_probs=161.7
Q ss_pred CCeEEEEeCCCC----EEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC---------C
Q 001380 612 NNRLFISDSNHN----RIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT---------E 677 (1089)
Q Consensus 612 ~g~L~vsd~~~~----~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~---------~ 677 (1089)
..++||++.+.+ +|.++|.+ ++++.++..+ ..| |++++|+|+.+||+++ .
T Consensus 31 ~~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG---------------~~P-~i~~spDg~~lyVan~~~~r~~~G~~ 94 (368)
T 1mda_H 31 SRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGA---------------FLS-LAVAGHSGSDFALASTSFARSAKGKR 94 (368)
T ss_dssp TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC---------------TTC-EEEECTTSSCEEEEEEEETTTTSSSE
T ss_pred CCeEEEECCccCCccceEEEEECCCCeEEEEEeCC---------------CCC-ceEECCCCCEEEEEcccccccccCCC
Confidence 478999999888 89999987 6777777655 158 9999999999999984 3
Q ss_pred CCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC-CcEEEE--EECCCCeEEEEe
Q 001380 678 NHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG-QHQIWE--HSTVDGVTRAFS 754 (1089)
Q Consensus 678 n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~-~~~I~~--~~~~~g~~~~~~ 754 (1089)
.+.|.+||+.++++..-...+..+ ..+....|++++++|+|+++||++.+ .+.|.. +|..+ +..+.
T Consensus 95 ~~~VsviD~~T~~vv~~I~v~~~~---------~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~ 163 (368)
T 1mda_H 95 TDYVEVFDPVTFLPIADIELPDAP---------RFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTK 163 (368)
T ss_dssp EEEEEEECTTTCCEEEEEEETTSC---------SCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCcc---------ccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEEE
Confidence 688999999986654332222000 01122479999999999999999976 577888 88765 33332
Q ss_pred CCCc--------c----ccCCCCCC---CCc-----------------cccCCceEEEcCCCCEEEEEeCCCCeEEEEEc
Q 001380 755 GDGY--------E----RNLNGSSS---LNT-----------------SFAQPSGISLSPDFMEIYVADSESSSIRALNL 802 (1089)
Q Consensus 755 g~g~--------~----~~~~g~~~---~~~-----------------~~~~P~glav~~~g~~lyvad~~~~~I~~~~~ 802 (1089)
-.+. . ...+|... ... --..|. + .++++.+|++.. +.|..++.
T Consensus 164 v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~--~-~~~~~~~~~vs~--~~V~viD~ 238 (368)
T 1mda_H 164 SASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA--Q-ANYPGMLVWAVA--SSILQGDI 238 (368)
T ss_dssp CSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE--E-ETTTTEEEECBS--SCCEEEEC
T ss_pred CCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc--c-cccCCEEEEEcC--CEEEEEEC
Confidence 1100 0 00000000 000 001233 2 344445555554 66777776
Q ss_pred CCCCeEEEecCCCCCCCCccccCCCCCccccccccCceE---EEEccCC-cEEEEeC-C-------CCEEEEEeCCCCeE
Q 001380 803 KTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLG---VYCAKNG-QIYVADS-Y-------NHKIKKLDPASNRV 870 (1089)
Q Consensus 803 ~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~g---va~~~~G-~lyVaD~-~-------n~~I~~~d~~~~~v 870 (1089)
.++..+.+.. +.++.. .....-..|.| ++++++| ++||+.. . .+.+.+||.+++++
T Consensus 239 ~~~~~~v~~~---------~~~~~~---~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v 306 (368)
T 1mda_H 239 PAAGATMKAA---------IDGNES---GRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT 306 (368)
T ss_dssp CSSCCEEECC---------CCSSCT---HHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE
T ss_pred CCCcceEEEE---------EEeccc---cccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeE
Confidence 5433222210 001000 00001123555 7899887 6999865 3 24567999988765
Q ss_pred EEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEEEEC-CCCEEEEEeCCCCCceEEEEe
Q 001380 871 STLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADT-NNNIIRYLDLNKEEPELQTLE 931 (1089)
Q Consensus 871 ~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~-~n~~I~~~~~~~~~~~~~~l~ 931 (1089)
..-...| ..|.||+++++|+ +|++.. .++.|.++|+.+. ..+.++.
T Consensus 307 v~~i~vg--------------~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I~ 354 (368)
T 1mda_H 307 SGPISNG--------------HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVE 354 (368)
T ss_dssp EECCEEE--------------EEECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECC
T ss_pred EEEEECC--------------CCcceEEECCCCCEEEEEccCCCCeEEEEECCCC-cEEEEEE
Confidence 4322121 1499999999996 999998 6999999999987 2445554
|
| >2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=4.2e-13 Score=138.42 Aligned_cols=110 Identities=11% Similarity=0.144 Sum_probs=90.6
Q ss_pred HHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhH
Q 001380 173 LINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGV 252 (1089)
Q Consensus 173 lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di 252 (1089)
+|+.|+++|++++|+||.....++..++++|+. .+|+ ..||++++|+++++++|+++++++||||+.+|+
T Consensus 61 ~l~~L~~~g~~v~ivT~~~~~~~~~~l~~lgl~-~~~~---------~~kpk~~~~~~~~~~~g~~~~~~~~iGD~~~Di 130 (188)
T 2r8e_A 61 GIRCALTSDIEVAIITGRKAKLVEDRCATLGIT-HLYQ---------GQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDW 130 (188)
T ss_dssp HHHHHHTTTCEEEEECSSCCHHHHHHHHHHTCC-EEEC---------SCSCSHHHHHHHHHHHTCCGGGEEEEESSGGGH
T ss_pred HHHHHHHCCCeEEEEeCCChHHHHHHHHHcCCc-eeec---------CCCCCHHHHHHHHHHcCCCHHHEEEECCCHHHH
Confidence 788999999999999999999999999999996 5543 369999999999999999999999999999999
Q ss_pred HHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHH-HHHh
Q 001380 253 QAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLN-DILT 296 (1089)
Q Consensus 253 ~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~-~ll~ 296 (1089)
.+|+++|+.+++. .+ .+.+.. .+++++.+..+..+. ++++
T Consensus 131 ~~a~~ag~~~~~~-~~--~~~~~~-~ad~v~~~~~~~g~~~~~l~ 171 (188)
T 2r8e_A 131 PVMEKVGLSVAVA-DA--HPLLIP-RADYVTRIAGGRGAVREVCD 171 (188)
T ss_dssp HHHTTSSEEEECT-TS--CTTTGG-GSSEECSSCTTTTHHHHHHH
T ss_pred HHHHHCCCEEEec-Cc--CHHHHh-cCCEEEeCCCCCcHHHHHHH
Confidence 9999999887543 22 223333 589999998666444 4443
|
| >2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.4e-13 Score=128.80 Aligned_cols=91 Identities=23% Similarity=0.392 Sum_probs=80.4
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+|++||+||++||++|+.+.|.|.++++++++. +.++.|++ |.+.++++.|
T Consensus 37 ~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~-v~~~~vd~---------------------------~~~~~l~~~~ 88 (136)
T 2l5l_A 37 GDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQ-IVIYKVDT---------------------------EKEQELAGAF 88 (136)
T ss_dssp CSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTT-CEEEEEET---------------------------TTCHHHHHHT
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCC-EEEEEEeC---------------------------CCCHHHHHHc
Confidence 4689999999999999999999999999999864 88898865 4456899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLF 571 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~ 571 (1089)
+|.++|+++++|++|+++ .+.|..+.+.+.++|++.+..
T Consensus 89 ~v~~~Pt~~~~~~~G~~~-~~~G~~~~~~l~~~l~~~~~~ 127 (136)
T 2l5l_A 89 GIRSIPSILFIPMEGKPE-MAQGAMPKASFKKAIDEFLLK 127 (136)
T ss_dssp TCCSSCEEEEECSSSCCE-EEESCCCHHHHHHHHHHHHTS
T ss_pred CCCCCCEEEEECCCCcEE-EEeCCCCHHHHHHHHHHHhhc
Confidence 999999999999999998 778888999999998877754
|
| >2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.40 E-value=8.7e-13 Score=125.60 Aligned_cols=89 Identities=21% Similarity=0.208 Sum_probs=81.2
Q ss_pred CEEEEEEecCCC--cchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 454 KVVVLDFWTYCC--INCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 454 k~vll~Fwa~wC--~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
++|||+|||+|| ++|+.+.|.|.++.++|.++ +.++-|.+ |.+.+++.+|
T Consensus 34 ~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~-v~~~KVdv---------------------------De~~~la~~y 85 (137)
T 2qsi_A 34 KIVVLFFRGDAVRFPEAADLAVVLPELINAFPGR-LVAAEVAA---------------------------EAERGLMARF 85 (137)
T ss_dssp SEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTT-EEEEEECG---------------------------GGHHHHHHHH
T ss_pred CcEEEEEeCCccCCCchhhHHhHHHHHHHHccCC-cEEEEEEC---------------------------CCCHHHHHHc
Confidence 499999999999 99999999999999999864 88888854 6778999999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLF 571 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~ 571 (1089)
+|+++||++++ ++|+++.+..|....+++.++|+.++..
T Consensus 86 gV~siPTlilF-kdG~~v~~~vG~~~k~~l~~~l~~~l~~ 124 (137)
T 2qsi_A 86 GVAVCPSLAVV-QPERTLGVIAKIQDWSSYLAQIGAMLAE 124 (137)
T ss_dssp TCCSSSEEEEE-ECCEEEEEEESCCCHHHHHHHHHHHHHH
T ss_pred CCccCCEEEEE-ECCEEEEEEeCCCCHHHHHHHHHHHhcc
Confidence 99999999999 9999999999999999999999887743
|
| >2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A | Back alignment and structure |
|---|
Probab=99.40 E-value=6.4e-13 Score=124.50 Aligned_cols=88 Identities=27% Similarity=0.453 Sum_probs=78.6
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
++|++||+||++||++|+.+.|.|.++++++++ ++.++.|++ |.+.++++.|
T Consensus 16 ~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~---------------------------~~~~~l~~~~ 67 (112)
T 2voc_A 16 SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGD-KLKIVKIDV---------------------------DENQETAGKY 67 (112)
T ss_dssp SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTT-TCEEEEEET---------------------------TTCCSHHHHT
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CcEEEEEEC---------------------------CCCHHHHHHc
Confidence 789999999999999999999999999999986 489999965 3456799999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
+|.++|+++++ ++|+++.++.|..+.+.+.++++..
T Consensus 68 ~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~ 103 (112)
T 2voc_A 68 GVMSIPTLLVL-KDGEVVETSVGFKPKEALQELVNKH 103 (112)
T ss_dssp TCCSBSEEEEE-ETTEEEEEEESCCCHHHHHHHHHTT
T ss_pred CCCcccEEEEE-eCCEEEEEEeCCCCHHHHHHHHHHH
Confidence 99999999999 9999999999999888888777643
|
| >2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-12 Score=125.79 Aligned_cols=94 Identities=21% Similarity=0.341 Sum_probs=82.7
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+|++||+||++||++|+.+.|.|.++++++++. +.++.|++ |.+.++++.|
T Consensus 34 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~vd~---------------------------~~~~~l~~~~ 85 (130)
T 2dml_A 34 SDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDV-VKVGAVNA---------------------------DKHQSLGGQY 85 (130)
T ss_dssp CSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTT-SEEEEEET---------------------------TTCHHHHHHH
T ss_pred CCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCc-eEEEEEeC---------------------------CCCHHHHHHc
Confidence 5789999999999999999999999999999864 88888854 4567899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHHhc
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFYG 573 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~~~ 573 (1089)
+|.++|++++++++|+++.++.|..+.+.+.++|.+.+....
T Consensus 86 ~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~l~~~~ 127 (130)
T 2dml_A 86 GVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALRSGP 127 (130)
T ss_dssp TCCSSSEEEEESSCTTSCEECCSCCSHHHHHHHHHHHHHHSS
T ss_pred CCCccCEEEEEeCCCCeEEEeecCCCHHHHHHHHHHHHhcCC
Confidence 999999999999999877888999899999999988887644
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-10 Score=123.33 Aligned_cols=222 Identities=13% Similarity=0.158 Sum_probs=148.4
Q ss_pred CCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC
Q 001380 657 NRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG 736 (1089)
Q Consensus 657 ~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~ 736 (1089)
..+.||+++++++.||++...+.+|.++|+++..++++.-.| ...+.||++.+++ .+||++.+
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g----------------~~D~EGIa~~~~g-~~~vs~E~ 89 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDF----------------VKDLETIEYIGDN-QFVISDER 89 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSS----------------CSSEEEEEECSTT-EEEEEETT
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCC----------------CCChHHeEEeCCC-EEEEEECC
Confidence 468999999998889987667899999999966666664222 2478999999766 89999999
Q ss_pred CcEEEEEECCCC-eEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCC-eEEEEEc--CCCCeEEEec
Q 001380 737 QHQIWEHSTVDG-VTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESS-SIRALNL--KTGGSRLLAG 812 (1089)
Q Consensus 737 ~~~I~~~~~~~g-~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~-~I~~~~~--~~~~~~~~~g 812 (1089)
+++++.++.... .+........ . .+..+.+. ...|||+++++++||++..... .|+.++- .+...+.+..
T Consensus 90 ~~~l~~~~v~~~~~i~~~~~~~~-~--~~~~~~N~---g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~ 163 (255)
T 3qqz_A 90 DYAIYVISLTPNSEVKILKKIKI-P--LQESPTNC---GFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKD 163 (255)
T ss_dssp TTEEEEEEECTTCCEEEEEEEEC-C--CSSCCCSS---CCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEEC
T ss_pred CCcEEEEEcCCCCeeeeeeeecc-c--cccccccC---CcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecc
Confidence 999998875432 2222111100 0 00001111 2479999999999999876554 7777761 1111111100
Q ss_pred CCCCCCCCccccCCCCCccccccccCceEEEEcc-CCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCccccccc
Q 001380 813 GDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAK-NGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQL 891 (1089)
Q Consensus 813 ~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~-~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l 891 (1089)
+ .+ .....+..+.++++|+ .|++||....+++|..+|.++..+..+.-.... ......+
T Consensus 164 --~-------~~------~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~-----~~l~~~~ 223 (255)
T 3qqz_A 164 --K-------AL------QRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGS-----RGLSHNI 223 (255)
T ss_dssp --H-------HH------HHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTG-----GGCSSCC
T ss_pred --h-------hh------ccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCcc-----CCccccc
Confidence 0 00 0011234689999997 578999999999999999998877766533110 0122357
Q ss_pred CCCceEEEccCCcEEEEECCCCEEEEEeCCC
Q 001380 892 SEPAGIIEAQNGNLFIADTNNNIIRYLDLNK 922 (1089)
Q Consensus 892 ~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~ 922 (1089)
..|.||++|++|+|||+.-. |.+.+|+...
T Consensus 224 ~qpEGia~d~~G~lyIvsE~-n~~y~f~~~~ 253 (255)
T 3qqz_A 224 KQAEGVAMDASGNIYIVSEP-NRFYRFTPQS 253 (255)
T ss_dssp CSEEEEEECTTCCEEEEETT-TEEEEEEC--
T ss_pred CCCCeeEECCCCCEEEEcCC-ceEEEEEecC
Confidence 78999999999999999765 5999997654
|
| >3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B | Back alignment and structure |
|---|
Probab=99.39 E-value=7.2e-13 Score=123.50 Aligned_cols=86 Identities=23% Similarity=0.418 Sum_probs=75.2
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
++|++||+||++||++|+.+.|.|.++++++++ +.++.|.+ |.+.++++.|
T Consensus 23 ~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~--~~~~~vd~---------------------------~~~~~l~~~~ 73 (109)
T 3f3q_A 23 QDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ--ADFYKLDV---------------------------DELGDVAQKN 73 (109)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEET---------------------------TTCHHHHHHT
T ss_pred cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCC--CEEEEEEC---------------------------CCCHHHHHHc
Confidence 589999999999999999999999999999974 77777754 4567899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
+|.++|++++++ +|+++.++.|. ..+.+.++|+++
T Consensus 74 ~v~~~Pt~~~~~-~G~~~~~~~G~-~~~~l~~~i~~~ 108 (109)
T 3f3q_A 74 EVSAMPTLLLFK-NGKEVAKVVGA-NPAAIKQAIAAN 108 (109)
T ss_dssp TCCSSSEEEEEE-TTEEEEEEESS-CHHHHHHHHHHH
T ss_pred CCCccCEEEEEE-CCEEEEEEeCC-CHHHHHHHHHhh
Confidence 999999999996 99999999998 567888777654
|
| >2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.2e-13 Score=132.97 Aligned_cols=90 Identities=18% Similarity=0.357 Sum_probs=81.3
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.++++||+||++||++|+.+.|.|++++++|+++ +.++.|++ |.+.++++.|
T Consensus 63 ~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~---------------------------~~~~~l~~~~ 114 (155)
T 2ppt_A 63 DDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQ-VRLAKIDT---------------------------QAHPAVAGRH 114 (155)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-CEEEEEET---------------------------TTSTHHHHHT
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCC-EEEEEEeC---------------------------CccHHHHHHc
Confidence 6899999999999999999999999999999864 89999965 3456899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
+|.++|+++++ ++|+++.++.|..+.+.+.++|++++.
T Consensus 115 ~i~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~ 152 (155)
T 2ppt_A 115 RIQGIPAFILF-HKGRELARAAGARPASELVGFVRGKLG 152 (155)
T ss_dssp TCCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred CCCcCCEEEEE-eCCeEEEEecCCCCHHHHHHHHHHHhc
Confidence 99999999999 899999999999999999999988764
|
| >2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-12 Score=121.27 Aligned_cols=89 Identities=24% Similarity=0.485 Sum_probs=79.7
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+|++||+||++||++|+.+.|.|+++++++++. +.++.|++ |.+.++++.|
T Consensus 19 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~v~~---------------------------~~~~~~~~~~ 70 (108)
T 2trx_A 19 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNI---------------------------DQNPGTAPKY 70 (108)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-EEEEEEET---------------------------TTCTTHHHHT
T ss_pred cCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCC-cEEEEEEC---------------------------CCCHHHHHHc
Confidence 5799999999999999999999999999999864 99999865 3455789999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
+|.++|+++++ ++|+++.++.|..+.+.+.++|++++
T Consensus 71 ~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l 107 (108)
T 2trx_A 71 GIRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANL 107 (108)
T ss_dssp TCCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CCcccCEEEEE-eCCEEEEEEecCCCHHHHHHHHHHhh
Confidence 99999999999 89999999999999999999888765
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-11 Score=146.01 Aligned_cols=259 Identities=13% Similarity=0.120 Sum_probs=172.4
Q ss_pred cCCeEEEEeCCCCEEEEEeCCC-CEEEEEecCCCCCCCCCCCCccccCCcceeEE-e-eCCCEEEEEE------------
Q 001380 611 LNNRLFISDSNHNRIVVTDLDG-NFIVQIGSSGEEGLRDGSFDDATFNRPQGLAY-N-AKKNLLYVAD------------ 675 (1089)
Q Consensus 611 ~~g~L~vsd~~~~~I~~~~~~g-~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~-d-~~g~~lyVaD------------ 675 (1089)
++.+|||+|..++||.++|.+. +....+.-+ .. ..|+|+++ . |+++++|++.
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip-~g------------~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~ 166 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIP-NA------------KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTN 166 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECS-SC------------CSEEEEEECCSSBCSEEEEEECSCEESSCSSSS
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCC-CC------------CCCcceeeeecCCCcEEEEecccccccCCCCcc
Confidence 4678999999999999999985 444444322 11 26899998 4 8999999995
Q ss_pred -----CCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC-------------
Q 001380 676 -----TENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ------------- 737 (1089)
Q Consensus 676 -----~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~------------- 737 (1089)
...+.+..||.++..+..-...| .+|.+++++++|+++|++...+
T Consensus 167 l~~~~~~~~~vtvID~~t~~v~~qI~Vg-----------------g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~ 229 (595)
T 1fwx_A 167 MEDVANYVNVFTAVDADKWEVAWQVLVS-----------------GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAE 229 (595)
T ss_dssp TTCGGGEEEEEEEEETTTTEEEEEEEES-----------------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCS
T ss_pred cccccccCceEEEEECCCCeEEEEEEeC-----------------CCccceEECCCCCEEEEEecCcccCcchhhccccc
Confidence 33458889999887655544322 1689999999999999999776
Q ss_pred -cEEEEEECCC-------------CeEEEEeCCCccccCCCCC-C-CCccccCCceEEEcCCCCEEEEEeCCCCeEEEEE
Q 001380 738 -HQIWEHSTVD-------------GVTRAFSGDGYERNLNGSS-S-LNTSFAQPSGISLSPDFMEIYVADSESSSIRALN 801 (1089)
Q Consensus 738 -~~I~~~~~~~-------------g~~~~~~g~g~~~~~~g~~-~-~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~ 801 (1089)
..|..+|... +.+..+.+.... +.. . .-.--.+|+|+.++|||+++||++..+++|.+++
T Consensus 230 ~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~----~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid 305 (595)
T 1fwx_A 230 MDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEA----SSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLD 305 (595)
T ss_dssp EEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGG----CCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEE
T ss_pred cceEEEeeccceeEeccCCCeeEECcEEEEeCcccC----CceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEE
Confidence 3355554221 123334332200 000 0 0011147999999999999999999999999999
Q ss_pred cCCCCeEEEecCCCCCCCCccccCCCCCc-cccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCC-----------Ce
Q 001380 802 LKTGGSRLLAGGDPIFPDNLFKFGDRDGM-GSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPAS-----------NR 869 (1089)
Q Consensus 802 ~~~~~~~~~~g~~~~~~~~l~~~g~~dg~-~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~-----------~~ 869 (1089)
.++.... ..+. .... +-. +.-..-..|++++++++|++|++..-.+.|.++|.++ ..
T Consensus 306 ~~~~~~~-~~~~--------l~~~--~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~v 374 (595)
T 1fwx_A 306 VTRFDAV-FYEN--------ADPR--SAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPI 374 (595)
T ss_dssp GGGHHHH-HHSC--------CCGG--GGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCE
T ss_pred Ccccccc-cccc--------cCcc--cceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhccccccee
Confidence 8743100 0000 0000 000 0000113699999999999999999999999998754 23
Q ss_pred EEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEEEECCC-CEE-----------EEEeCCCC
Q 001380 870 VSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADTNN-NII-----------RYLDLNKE 923 (1089)
Q Consensus 870 v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~~n-~~I-----------~~~~~~~~ 923 (1089)
+.++.- +|..| ......|+++.+||+ ||+++... +|+ +.|+..+.
T Consensus 375 i~kidV----~yqpG-----h~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~ 432 (595)
T 1fwx_A 375 KDKLDV----HYQPG-----HLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGD 432 (595)
T ss_dssp EEEEEC----SSCEE-----EEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSS
T ss_pred EEEeec----ccccc-----cceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCC
Confidence 444432 12211 345567888889996 99999887 777 88888765
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-11 Score=144.01 Aligned_cols=175 Identities=14% Similarity=0.231 Sum_probs=109.3
Q ss_pred CCCCCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeC---CCE
Q 001380 595 LFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAK---KNL 670 (1089)
Q Consensus 595 ~~~~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~---g~~ 670 (1089)
.+++.|..|++|++++ +|+|||++...++|++++.+ |+........ . .+. .......+.||+++|+ ++.
T Consensus 21 ~~a~~l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~-~-~~~----~~~g~~Gllgia~~Pdf~~~g~ 93 (454)
T 1cru_A 21 VILSNLNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVP-E-IVN----DADGQNGLLGFAFHPDFKNNPY 93 (454)
T ss_dssp EEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECT-T-CCC----CTTSSCSEEEEEECTTTTTSCE
T ss_pred EEECCCCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCC-c-ccc----ccCCCCceeEEEECCCcCcCCE
Confidence 4567899999999998 89999999987899999874 6543322211 1 000 0001235679999996 667
Q ss_pred EEEEECC------------CCEEEEEECCCC--e---EEEEec-CCCCCCCCCCCCcccccccCCceeEEEecCCCEEEE
Q 001380 671 LYVADTE------------NHALREIDFVND--T---VRTLAG-NGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYI 732 (1089)
Q Consensus 671 lyVaD~~------------n~~I~~~d~~~g--~---v~~~ag-~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyv 732 (1089)
|||+++. .++|.+++.+.+ . .+++.. ... .....+.+|+++++| .|||
T Consensus 94 lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-------------~~~H~~~~l~f~pDG-~Lyv 159 (454)
T 1cru_A 94 IYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS-------------SKDHQSGRLVIGPDQ-KIYY 159 (454)
T ss_dssp EEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC-------------CSSCCEEEEEECTTS-CEEE
T ss_pred EEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC-------------CCCCCCCeEeECCCC-eEEE
Confidence 9999864 468988886532 2 223321 110 013478999999988 8999
Q ss_pred EECC--------------------------------CcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEE
Q 001380 733 AMAG--------------------------------QHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISL 780 (1089)
Q Consensus 733 ad~~--------------------------------~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav 780 (1089)
+... .++|+++++++..- .++..... ....-...++.+|.||++
T Consensus 160 ~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip---~~Npf~~~-~~~ei~a~G~RNp~gla~ 235 (454)
T 1cru_A 160 TIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIP---KDNPSFNG-VVSHIYTLGHRNPQGLAF 235 (454)
T ss_dssp EECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCC---TTCCEETT-EECSEEEBCCSEEEEEEE
T ss_pred EECCCCCCCccccccccccccccccccccccCCCCCCeeEEEEeCCCCCC---CCCCCCCC-CcceEEEECCCCcceEEE
Confidence 8542 24677776654200 00000000 000012256789999999
Q ss_pred cCCCCEEEEEeCCCC
Q 001380 781 SPDFMEIYVADSESS 795 (1089)
Q Consensus 781 ~~~g~~lyvad~~~~ 795 (1089)
+++| .||++|.+..
T Consensus 236 dp~G-~L~~~d~g~~ 249 (454)
T 1cru_A 236 TPNG-KLLQSEQGPN 249 (454)
T ss_dssp CTTS-CEEEEEECSS
T ss_pred CCCC-CEEEEecCCC
Confidence 9976 9999997654
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.7e-11 Score=126.74 Aligned_cols=205 Identities=13% Similarity=0.094 Sum_probs=139.8
Q ss_pred cceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCc
Q 001380 659 PQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQH 738 (1089)
Q Consensus 659 P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~ 738 (1089)
-+||.++ ++.||++...+++|+++|++++++..-. .+.. ...-|+++ .++.||++.+.++
T Consensus 57 tqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~---------------~FgeGit~--~g~~Ly~ltw~~~ 116 (268)
T 3nok_A 57 TQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLGN---------------IFAEGLAS--DGERLYQLTWTEG 116 (268)
T ss_dssp EEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTT---------------CCEEEEEE--CSSCEEEEESSSC
T ss_pred cceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCC---------------cceeEEEE--eCCEEEEEEccCC
Confidence 3899997 4679999999999999999987754433 2210 12244555 4679999999999
Q ss_pred EEEEEECCCCeEE-EEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCC
Q 001380 739 QIWEHSTVDGVTR-AFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIF 817 (1089)
Q Consensus 739 ~I~~~~~~~g~~~-~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~ 817 (1089)
.+++||+.+..+. .+.-. ..+.||+. +|++||++| ++++|+.+|+.+..+..-..
T Consensus 117 ~v~V~D~~Tl~~~~ti~~~----------------~eGwGLt~--Dg~~L~vSd-Gs~~l~~iDp~T~~v~~~I~----- 172 (268)
T 3nok_A 117 LLFTWSGMPPQRERTTRYS----------------GEGWGLCY--WNGKLVRSD-GGTMLTFHEPDGFALVGAVQ----- 172 (268)
T ss_dssp EEEEEETTTTEEEEEEECS----------------SCCCCEEE--ETTEEEEEC-SSSEEEEECTTTCCEEEEEE-----
T ss_pred EEEEEECCcCcEEEEEeCC----------------CceeEEec--CCCEEEEEC-CCCEEEEEcCCCCeEEEEEE-----
Confidence 9999999887654 44311 13456764 466999999 69999999999866542111
Q ss_pred CCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCC-CCCCCcccccccCCCce
Q 001380 818 PDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKA-GFKDGAALAAQLSEPAG 896 (1089)
Q Consensus 818 ~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~-g~~~g~~~~~~l~~P~g 896 (1089)
.+.. + ..+..+..+.+. +|.||++.+..+.|.+||++++.+......+.- .... .......+-|+|
T Consensus 173 ------V~~~-g----~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~-~~~~~~~~vlNG 239 (268)
T 3nok_A 173 ------VKLR-G----QPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVA-GQVTNPEAVLNG 239 (268)
T ss_dssp ------CEET-T----EECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHT-TTCCCTTCCEEE
T ss_pred ------eCCC-C----cccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCccccc-ccccCcCCceEE
Confidence 0000 0 113455667776 889999999999999999999988665543210 0000 000113457999
Q ss_pred EEEccCC-cEEEEECCCCEEEEEeC
Q 001380 897 IIEAQNG-NLFIADTNNNIIRYLDL 920 (1089)
Q Consensus 897 i~vd~~G-~lyVad~~n~~I~~~~~ 920 (1089)
||+|+++ +|||+.-.=.++..+.+
T Consensus 240 IA~dp~~~rlfVTGK~Wp~~~ev~~ 264 (268)
T 3nok_A 240 IAVEPGSGRIFMTGKLWPRLFEVRL 264 (268)
T ss_dssp EEECTTTCCEEEEETTCSEEEEEEE
T ss_pred EEEcCCCCEEEEeCCCCCceEEEEE
Confidence 9999865 69999876667766654
|
| >2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-12 Score=126.12 Aligned_cols=89 Identities=22% Similarity=0.444 Sum_probs=80.0
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
++|++||+||++||++|+.+.|.|++++++++++ +.++.|++ |.+.++++.|
T Consensus 39 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~vd~---------------------------~~~~~l~~~~ 90 (128)
T 2o8v_B 39 ADGAILVDFWAEWCGPAKMIAPILDEIADEYQGK-LTVAKLNI---------------------------DQNPGTAPKY 90 (128)
T ss_dssp CSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTT-EEEEEEET---------------------------TTCCTTSGGG
T ss_pred cCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-eEEEEEEC---------------------------CCCHHHHHHc
Confidence 6899999999999999999999999999999864 99999965 3345788999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
+|.++|+++++ ++|+++.++.|..+.+.+.++|++++
T Consensus 91 ~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l 127 (128)
T 2o8v_B 91 GIRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANL 127 (128)
T ss_dssp TCCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CCCccCEEEEE-eCCEEEEEEcCCCCHHHHHHHHHHhh
Confidence 99999999999 99999999999999999999988765
|
| >3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.38 E-value=8.2e-13 Score=122.66 Aligned_cols=89 Identities=25% Similarity=0.403 Sum_probs=80.3
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
++|++||+||++||++|+.+.|.|.++++++++. +.++.|++ |.+.++++.|
T Consensus 20 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~v~~---------------------------~~~~~~~~~~ 71 (109)
T 3tco_A 20 NNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGK-AVFGRLNV---------------------------DENQKIADKY 71 (109)
T ss_dssp HSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-SEEEEEET---------------------------TTCHHHHHHT
T ss_pred cCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCC-ceEEEEcc---------------------------ccCHHHHHhc
Confidence 5899999999999999999999999999999864 88888854 4567899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
+|.++|+++++ ++|+++.++.|..+.+.+.++|++++
T Consensus 72 ~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~l 108 (109)
T 3tco_A 72 SVLNIPTTLIF-VNGQLVDSLVGAVDEDTLESTVNKYL 108 (109)
T ss_dssp TCCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred CcccCCEEEEE-cCCcEEEeeeccCCHHHHHHHHHHHh
Confidence 99999999999 99999999999999999999888765
|
| >4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.3e-13 Score=122.92 Aligned_cols=87 Identities=16% Similarity=0.182 Sum_probs=69.2
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
++|++||+||++||++|+.+.|.+.+++++|+ ++.++.|++ |.+.+++++|
T Consensus 17 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~---------------------------~~~~~l~~~~ 67 (105)
T 4euy_A 17 EQQLVLLFIKTENCGVCDVMLRKVNYVLENYN--YVEKIEILL---------------------------QDMQEIAGRY 67 (105)
T ss_dssp CSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT--TEEEEEEEE---------------------------CCC-------
T ss_pred cCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC--CceEEEEEC---------------------------CCCHHHHHhc
Confidence 67999999999999999999999999999985 588888854 4556889999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
+|.++|+++++ ++|+++.++.|..+.+.+.++|+++
T Consensus 68 ~v~~~Pt~~~~-~~G~~~~~~~g~~~~~~l~~~l~~~ 103 (105)
T 4euy_A 68 AVFTGPTVLLF-YNGKEILRESRFISLENLERTIQLF 103 (105)
T ss_dssp --CCCCEEEEE-ETTEEEEEEESSCCHHHHHHHHHTT
T ss_pred CCCCCCEEEEE-eCCeEEEEEeCCcCHHHHHHHHHHh
Confidence 99999999999 6999999999999999888887754
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=4.1e-10 Score=135.90 Aligned_cols=256 Identities=11% Similarity=0.054 Sum_probs=180.0
Q ss_pred EeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEEC
Q 001380 608 IDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDF 686 (1089)
Q Consensus 608 vd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~ 686 (1089)
.|+ ++.+||+....++|.++|.+ ++++.++..+ ..|++++++|+|+++||++. .+.|.+||+
T Consensus 163 ~d~-~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g---------------~~p~~v~~SpDGr~lyv~~~-dg~V~viD~ 225 (567)
T 1qks_A 163 WDL-ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG---------------YAVHISRLSASGRYLFVIGR-DGKVNMIDL 225 (567)
T ss_dssp CCG-GGEEEEEETTTTEEEEEETTTCCEEEEEECS---------------SCEEEEEECTTSCEEEEEET-TSEEEEEET
T ss_pred cCC-CceEEEEeCCCCeEEEEECCCCeEEEEEeCC---------------CCccceEECCCCCEEEEEcC-CCeEEEEEC
Confidence 454 67899999999999999987 6777777654 26899999999999999984 678999999
Q ss_pred C--CC-eEEEEecCCCCCCCCCCCCcccccccCCceeEEEe----cCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCcc
Q 001380 687 V--ND-TVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYK----PINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYE 759 (1089)
Q Consensus 687 ~--~g-~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~----~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~ 759 (1089)
. ++ .+.++. .| ..|.+++++ |+|+++|+++...++|..+|..+.++......+..
T Consensus 226 ~~~t~~~v~~i~-~G-----------------~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~ 287 (567)
T 1qks_A 226 WMKEPTTVAEIK-IG-----------------SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGM 287 (567)
T ss_dssp TSSSCCEEEEEE-CC-----------------SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEE
T ss_pred CCCCCcEeEEEe-cC-----------------CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccc
Confidence 4 43 444443 22 268999999 69999999999999999999887765443221110
Q ss_pred ccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCc
Q 001380 760 RNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHP 839 (1089)
Q Consensus 760 ~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P 839 (1089)
. .++... ..-..+.+|..++++..++++..+++.|..++..+.....+..- . .-.+|
T Consensus 288 ~-~~~~~~--~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-----------~---------~~~~~ 344 (567)
T 1qks_A 288 T-YDEQEY--HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-----------S---------AERFL 344 (567)
T ss_dssp C-TTTCCE--ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-----------E---------CCSSE
T ss_pred c-cccccc--cCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-----------e---------ccccc
Confidence 0 000000 00113468888888878889989999999999875432211110 0 01368
Q ss_pred eEEEEccCCc-EEEEeCCCCEEEEEeCCCCeEEEEecc-CCCCCCCCcccccccCCC-ceEE-EccC-CcEEEEE-CCCC
Q 001380 840 LGVYCAKNGQ-IYVADSYNHKIKKLDPASNRVSTLAGI-GKAGFKDGAALAAQLSEP-AGII-EAQN-GNLFIAD-TNNN 913 (1089)
Q Consensus 840 ~gva~~~~G~-lyVaD~~n~~I~~~d~~~~~v~t~~g~-g~~g~~~g~~~~~~l~~P-~gi~-vd~~-G~lyVad-~~n~ 913 (1089)
.++.++++|+ +||++...++|.++|.+++.+...... + ...+| .|.. ++++ |.+|++. .+++
T Consensus 345 ~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg------------~~Phpg~g~~~~~p~~g~v~~t~~~g~~ 412 (567)
T 1qks_A 345 HDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGG------------QTPHPGRGANFVHPTFGPVWATSHMGDD 412 (567)
T ss_dssp EEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS------------SSBCCTTCEEEEETTTEEEEEEEBSSSS
T ss_pred cCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccC------------cCCCCccceeeECCCCCcEEEeCCCCCC
Confidence 8999999995 889999999999999999887655433 2 22334 3655 4665 5788865 4678
Q ss_pred EEEEEeCCCC------CceEEEEeec
Q 001380 914 IIRYLDLNKE------EPELQTLELK 933 (1089)
Q Consensus 914 ~I~~~~~~~~------~~~~~~l~~~ 933 (1089)
.|.+|+.... -..+.++...
T Consensus 413 ~Vsvid~~~~~~~~~~~kvv~~i~~~ 438 (567)
T 1qks_A 413 SVALIGTDPEGHPDNAWKILDSFPAL 438 (567)
T ss_dssp EEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred eEEEecCCCCCCccccCEEEEEEecC
Confidence 9999998762 1246677643
|
| >3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.6e-13 Score=128.56 Aligned_cols=94 Identities=20% Similarity=0.280 Sum_probs=80.1
Q ss_pred cCCCEEEEEEecCCCcchhhhhhhHH--HHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHH
Q 001380 451 LKGKVVVLDFWTYCCINCMHVLPDLE--FLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLW 528 (1089)
Q Consensus 451 ~~gk~vll~Fwa~wC~~C~~~~p~l~--~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~ 528 (1089)
.+||++||+||++||++|+.+.|.|. ++.+++++ ++.++.|+++. .|...+++
T Consensus 27 ~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~-~~~~~~vd~~~------------------------~~~~~~l~ 81 (133)
T 3fk8_A 27 RTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAK-HFEVVKIDVGN------------------------FDRNLELS 81 (133)
T ss_dssp HHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHH-HCEEEEEECTT------------------------TTSSHHHH
T ss_pred hcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcC-CEEEEEEeCCc------------------------ccchHHHH
Confidence 46899999999999999999999999 99988864 48899996521 25677899
Q ss_pred HHhCC---CceeEEEEECCCCcEEEEecC-------CCchhhHHHHHHHHH
Q 001380 529 RELGV---NSWPTFAVVGPNGKLLAQLAG-------EGHRKDLDDLVEAAL 569 (1089)
Q Consensus 529 ~~~~v---~~~Pt~~lid~~G~i~~~~~G-------~~~~~~l~~~l~~~l 569 (1089)
+.|+| .++|+++++|++|+++.++.| ....+.+.++|+.+.
T Consensus 82 ~~~~v~~~~~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l~ 132 (133)
T 3fk8_A 82 QAYGDPIQDGIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAKIT 132 (133)
T ss_dssp HHTTCGGGGCSSEEEEECTTSCEEEECCSCTTTTGGGSCHHHHHHHHHHHH
T ss_pred HHhCCccCCccceEEEECCCCCEEEEecCCcccccccCCHHHHHHHHHHhc
Confidence 99999 999999999999999999888 567778888877653
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.37 E-value=7.7e-11 Score=125.21 Aligned_cols=203 Identities=15% Similarity=0.174 Sum_probs=138.0
Q ss_pred ceeEEeeCCCEEEEEECCC--CEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC
Q 001380 660 QGLAYNAKKNLLYVADTEN--HALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ 737 (1089)
Q Consensus 660 ~gla~d~~g~~lyVaD~~n--~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~ 737 (1089)
|||.++ ++ .||++.... +.|+++|+++|++..-...+.. ...-|++++ ++.||++.+.+
T Consensus 46 qGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~---------------~FgeGit~~--g~~ly~ltw~~ 106 (262)
T 3nol_A 46 EGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQQIELGKR---------------YFGEGISDW--KDKIVGLTWKN 106 (262)
T ss_dssp EEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEEEEECCTT---------------CCEEEEEEE--TTEEEEEESSS
T ss_pred ceEEEE-CC-EEEEECCCCCCceEEEEECCCCcEEEEEecCCc---------------cceeEEEEe--CCEEEEEEeeC
Confidence 999998 55 699997654 5999999999887655432210 122445554 67999999999
Q ss_pred cEEEEEECCCCeEE-EEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeE-EEecCCC
Q 001380 738 HQIWEHSTVDGVTR-AFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR-LLAGGDP 815 (1089)
Q Consensus 738 ~~I~~~~~~~g~~~-~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~-~~~g~~~ 815 (1089)
+.+++||+.+..+. .+.-. ..+.|++ ++|+.||++| ++++|+.+|+.+..+. .+.-+
T Consensus 107 ~~v~v~D~~t~~~~~ti~~~----------------~eG~glt--~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~~I~V~-- 165 (262)
T 3nol_A 107 GLGFVWNIRNLRQVRSFNYD----------------GEGWGLT--HNDQYLIMSD-GTPVLRFLDPESLTPVRTITVT-- 165 (262)
T ss_dssp SEEEEEETTTCCEEEEEECS----------------SCCCCEE--ECSSCEEECC-SSSEEEEECTTTCSEEEEEECE--
T ss_pred CEEEEEECccCcEEEEEECC----------------CCceEEe--cCCCEEEEEC-CCCeEEEEcCCCCeEEEEEEec--
Confidence 99999999877544 44411 1345666 4566999999 5899999999976653 22110
Q ss_pred CCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcc-cccccCCC
Q 001380 816 IFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAA-LAAQLSEP 894 (1089)
Q Consensus 816 ~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~-~~~~l~~P 894 (1089)
.. | ..+.++..+.+. +|.||++.+..+.|.+||++++.+........ ...... .....+-|
T Consensus 166 ----------~~-g----~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~--L~~~~~~~~~~~~vl 227 (262)
T 3nol_A 166 ----------AH-G----EELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNG--ILAEAGPLPSPIDVL 227 (262)
T ss_dssp ----------ET-T----EECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTT--GGGGSCSCCSSCCCE
T ss_pred ----------cC-C----ccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCc--CccccccccCcCCce
Confidence 00 0 013345566665 89999999999999999999998876554321 000000 11234679
Q ss_pred ceEEEccCC-cEEEEECCCCEEEEEeC
Q 001380 895 AGIIEAQNG-NLFIADTNNNIIRYLDL 920 (1089)
Q Consensus 895 ~gi~vd~~G-~lyVad~~n~~I~~~~~ 920 (1089)
+|||+|+++ +|||+.-+=.++..+.+
T Consensus 228 NGIA~dp~~~~lfVTGK~Wp~~~ev~~ 254 (262)
T 3nol_A 228 NGIAWDKEHHRLFVTGKLWPKVFEITL 254 (262)
T ss_dssp EEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred EEEEEcCCCCEEEEECCCCCceEEEEE
Confidence 999999865 69999876666666554
|
| >1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A | Back alignment and structure |
|---|
Probab=99.37 E-value=5.7e-13 Score=123.03 Aligned_cols=88 Identities=25% Similarity=0.425 Sum_probs=77.6
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+|++||+||++||++|+.+.|.|+++.+++++. +.++.|++ |.+.++++.|
T Consensus 16 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~-v~~~~v~~---------------------------~~~~~~~~~~ 67 (105)
T 1nsw_A 16 GDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK-VTVAKLNV---------------------------DENPETTSQF 67 (105)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTT-CEEEEEET---------------------------TTCHHHHHHT
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEEC---------------------------cCCHHHHHHc
Confidence 6789999999999999999999999999999864 88898865 4456799999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
+|.++|+++++ ++|+++.++.|..+.+.+.++|+++
T Consensus 68 ~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~ 103 (105)
T 1nsw_A 68 GIMSIPTLILF-KGGRPVKQLIGYQPKEQLEAQLADV 103 (105)
T ss_dssp TCCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHTTTT
T ss_pred CCccccEEEEE-eCCeEEEEEecCCCHHHHHHHHHHH
Confidence 99999999999 8999999999998888887777543
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.8e-11 Score=133.00 Aligned_cols=220 Identities=16% Similarity=0.268 Sum_probs=146.9
Q ss_pred cCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecC---CCEEEE
Q 001380 656 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPI---NEKVYI 732 (1089)
Q Consensus 656 f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~---g~~lyv 732 (1089)
+..|.+|+++|+|. |||++...++|++++.+++..+.+.....- .......|.||+++|+ ++.||+
T Consensus 31 L~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~~~v----------~~~g~~GllGia~~Pdf~~~g~lYv 99 (347)
T 3das_A 31 LNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEVPGV----------SPSGEGGLLGIALSPDYASDHMVYA 99 (347)
T ss_dssp CSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTC----------CCBTTBSEEEEEECTTHHHHCEEEE
T ss_pred CCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeecccCce----------eecCCCCceeeEeccccccCCEEEE
Confidence 67999999999998 999998889999999877777666432110 0111347899999995 569999
Q ss_pred EEC--CCcEEEEEECCCC---------eEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeC---------
Q 001380 733 AMA--GQHQIWEHSTVDG---------VTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADS--------- 792 (1089)
Q Consensus 733 ad~--~~~~I~~~~~~~g---------~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~--------- 792 (1089)
+.. ..++|.++...++ ....+.+.. .........|++++|| .|||+..
T Consensus 100 ~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p-----------~~~~H~g~~l~fgpDG-~Lyvt~Gd~~~~~~~q 167 (347)
T 3das_A 100 YFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIP-----------KGVIHNGGRIAFGPDK-MLYAGTGESGDTGLSQ 167 (347)
T ss_dssp EEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEEC-----------CCSSCCCCCEEECTTS-CEEEECBCTTCGGGTT
T ss_pred EEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCC-----------CCCCccCccccCCCCC-CEEEEECCCCCCcccc
Confidence 753 5678998877652 111222110 0123457789999998 9999942
Q ss_pred ----CCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCC---EEEEEeC
Q 001380 793 ----ESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNH---KIKKLDP 865 (1089)
Q Consensus 793 ----~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~---~I~~~d~ 865 (1089)
..++|.++++++. +..+++.....++..| +.+|.|++++++|.||++|.+.. +|.++.+
T Consensus 168 d~~~~~G~IlRi~~dG~----ip~~nPf~~~~i~a~G----------~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~ 233 (347)
T 3das_A 168 DRKSLGGKILRMTPDGE----PAPGNPFPGSPVYSYG----------HRNVQGLAWDDKQRLFASEFGQDTWDELNAIKP 233 (347)
T ss_dssp CTTCSTTCEEEECTTSS----BCTTCSSTTCCEEEBC----------CSBCCEEEECTTCCEEEEECCSSSCEEEEEECT
T ss_pred CCCCCCCEEEEEeCCCC----ccCCCCCCCCeEEeeC----------CCCcceEEECCCCCEEEEecCCCCCceeeEEcC
Confidence 3578999998743 1222232222344555 45799999999999999998753 4444432
Q ss_pred CCCeEEEEeccCCCCCCC--C------cc----c-ccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 866 ASNRVSTLAGIGKAGFKD--G------AA----L-AAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 866 ~~~~v~t~~g~g~~g~~~--g------~~----~-~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
.+..|+.. | .. . ......|.||++. +|.+|+++..+.+|.++.+++.
T Consensus 234 ----------G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~ 293 (347)
T 3das_A 234 ----------GDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGT 293 (347)
T ss_dssp ----------TCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETT
T ss_pred ----------CCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCC
Confidence 12222211 1 00 0 0011478999998 5899999999999999988765
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.9e-10 Score=118.89 Aligned_cols=206 Identities=17% Similarity=0.184 Sum_probs=140.4
Q ss_pred CcceeEEeeCCCEEEEEECC--CCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC
Q 001380 658 RPQGLAYNAKKNLLYVADTE--NHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA 735 (1089)
Q Consensus 658 ~P~gla~d~~g~~lyVaD~~--n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~ 735 (1089)
.-|||.++. +.||++... .+.|+++|+++|++..-...+.. ...-|++++ ++.||++.+
T Consensus 22 ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~---------------~fgeGi~~~--~~~ly~ltw 82 (243)
T 3mbr_X 22 FTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP---------------YFGAGIVAW--RDRLIQLTW 82 (243)
T ss_dssp CEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT---------------CCEEEEEEE--TTEEEEEES
T ss_pred ccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC---------------cceeEEEEe--CCEEEEEEe
Confidence 459999984 569999765 46999999999887665432210 123455554 689999999
Q ss_pred CCcEEEEEECCCCeEE-EEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeE-EEecC
Q 001380 736 GQHQIWEHSTVDGVTR-AFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR-LLAGG 813 (1089)
Q Consensus 736 ~~~~I~~~~~~~g~~~-~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~-~~~g~ 813 (1089)
.++.+++||..+..+. ++.-. ..+.||+ .++++||++| ++++|..+|+.+..+. .+.-+
T Consensus 83 ~~~~v~v~D~~tl~~~~ti~~~----------------~~Gwglt--~dg~~L~vSd-gs~~l~~iDp~t~~~~~~I~V~ 143 (243)
T 3mbr_X 83 RNHEGFVYDLATLTPRARFRYP----------------GEGWALT--SDDSHLYMSD-GTAVIRKLDPDTLQQVGSIKVT 143 (243)
T ss_dssp SSSEEEEEETTTTEEEEEEECS----------------SCCCEEE--ECSSCEEEEC-SSSEEEEECTTTCCEEEEEECE
T ss_pred eCCEEEEEECCcCcEEEEEeCC----------------CCceEEe--eCCCEEEEEC-CCCeEEEEeCCCCeEEEEEEEc
Confidence 9999999999887654 44411 1345666 4566999999 5899999999876653 22111
Q ss_pred CCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCccc--cccc
Q 001380 814 DPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAAL--AAQL 891 (1089)
Q Consensus 814 ~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~--~~~l 891 (1089)
.. + ..+.++..+.+. +|.||++.+..+.|.+||++++.+......+. ....... ....
T Consensus 144 ------------~~-g----~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~--l~~~~~~~~~~~~ 203 (243)
T 3mbr_X 144 ------------AG-G----RPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQA--LVPDADALTDSTN 203 (243)
T ss_dssp ------------ET-T----EECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGG--GSTTTTSCCCTTS
T ss_pred ------------cC-C----cccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCc--CccccccccCCcC
Confidence 00 0 013345566665 88999999999999999999998866554321 1000000 1234
Q ss_pred CCCceEEEccCC-cEEEEECCCCEEEEEeCC
Q 001380 892 SEPAGIIEAQNG-NLFIADTNNNIIRYLDLN 921 (1089)
Q Consensus 892 ~~P~gi~vd~~G-~lyVad~~n~~I~~~~~~ 921 (1089)
+-|+|||.|+++ +|||+.-.=.++..+.+.
T Consensus 204 ~vlNGIA~d~~~~~lfVTGK~wp~~~~v~~~ 234 (243)
T 3mbr_X 204 DVLNGIAFDAEHDRLFVTGKRWPMLYEIRLT 234 (243)
T ss_dssp SCEEEEEEETTTTEEEEEETTCSEEEEEEEC
T ss_pred CceEEEEEcCCCCEEEEECCCCCcEEEEEEe
Confidence 679999999854 699998776777766654
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-10 Score=130.51 Aligned_cols=232 Identities=12% Similarity=0.057 Sum_probs=156.6
Q ss_pred eEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEE
Q 001380 614 RLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVR 692 (1089)
Q Consensus 614 ~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~ 692 (1089)
.++++....++|.++|.. ++.+..+...+. ...|.+++++++|+.+|+++..++.|+.+|+.++.+.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~------------~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~ 69 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADA------------GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL 69 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTC------------TTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCC------------CCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeE
Confidence 467788888999999986 566666654311 1148999999999889999998999999999887655
Q ss_pred EEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC-----------CCcEEEEEECCCCeEEEEeCCCcccc
Q 001380 693 TLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA-----------GQHQIWEHSTVDGVTRAFSGDGYERN 761 (1089)
Q Consensus 693 ~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~-----------~~~~I~~~~~~~g~~~~~~g~g~~~~ 761 (1089)
.....+..+. .-..|.+++++|+|+.||+++. ..+.|+.+|..++........+
T Consensus 70 ~~~~~~~~~~-----------~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---- 134 (337)
T 1pby_B 70 GRIDLSTPEE-----------RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP---- 134 (337)
T ss_dssp EEEECCBTTE-----------EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC----
T ss_pred eeEEcCCccc-----------ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC----
Confidence 4332221000 0125889999999999999963 3589999999887665433111
Q ss_pred CCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceE
Q 001380 762 LNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLG 841 (1089)
Q Consensus 762 ~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~g 841 (1089)
..|.+++++++|+.||++ ++.|+.++..++.......... . ..|
T Consensus 135 -----------~~~~~~~~s~dg~~l~~~---~~~i~~~d~~~~~~~~~~~~~~-----------~---------~~~-- 178 (337)
T 1pby_B 135 -----------RQITMLAWARDGSKLYGL---GRDLHVMDPEAGTLVEDKPIQS-----------W---------EAE-- 178 (337)
T ss_dssp -----------SSCCCEEECTTSSCEEEE---SSSEEEEETTTTEEEEEECSTT-----------T---------TTT--
T ss_pred -----------CCcceeEECCCCCEEEEe---CCeEEEEECCCCcEeeeeeccc-----------c---------CCC--
Confidence 247899999999889999 4789999998776543221100 0 001
Q ss_pred EEEccCCc-EEEEeCCCC-----------------------EEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceE
Q 001380 842 VYCAKNGQ-IYVADSYNH-----------------------KIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGI 897 (1089)
Q Consensus 842 va~~~~G~-lyVaD~~n~-----------------------~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi 897 (1089)
++++++|. +|++....+ .|..+|..++.+.++.-.. .-..|.++
T Consensus 179 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~------------~~~~~~~~ 246 (337)
T 1pby_B 179 TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI------------MDVFYFST 246 (337)
T ss_dssp TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE------------CSSCEEEE
T ss_pred ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCC------------CCCceeeE
Confidence 12233332 333332222 6788999888776432110 12458899
Q ss_pred EEccCCc-EEEEECCCCEEEEEeCCCC
Q 001380 898 IEAQNGN-LFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 898 ~vd~~G~-lyVad~~n~~I~~~~~~~~ 923 (1089)
+++++|+ ||++ ++.|.++++.+.
T Consensus 247 ~~s~dg~~l~~~---~~~v~~~d~~~~ 270 (337)
T 1pby_B 247 AVNPAKTRAFGA---YNVLESFDLEKN 270 (337)
T ss_dssp EECTTSSEEEEE---ESEEEEEETTTT
T ss_pred EECCCCCEEEEe---CCeEEEEECCCC
Confidence 9999986 7877 589999999876
|
| >1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-12 Score=120.00 Aligned_cols=89 Identities=28% Similarity=0.471 Sum_probs=78.8
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+|++||+||++||++|+.+.|.|+++++++++. +.++.|++ |.+.++++.|
T Consensus 18 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~v~~---------------------------~~~~~~~~~~ 69 (107)
T 1dby_A 18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK-LKCVKLNT---------------------------DESPNVASEY 69 (107)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEET---------------------------TTCHHHHHHH
T ss_pred CCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCc-eEEEEEEC---------------------------CCCHHHHHHC
Confidence 5799999999999999999999999999999864 88899864 4456899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
+|.++|+++++ ++|+++.++.|..+.+.+.++|++++
T Consensus 70 ~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l 106 (107)
T 1dby_A 70 GIRSIPTIMVF-KGGKKCETIIGAVPKATIVQTVEKYL 106 (107)
T ss_dssp TCCSSCEEEEE-SSSSEEEEEESCCCHHHHHHHHHHHC
T ss_pred CCCcCCEEEEE-eCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 99999998888 79999999999998888888887654
|
| >1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-12 Score=121.48 Aligned_cols=90 Identities=26% Similarity=0.466 Sum_probs=79.7
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+|++||+||++||++|+.+.|.|.++++++++. +.++.|++ |.+.++++.|
T Consensus 22 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~v~~---------------------------~~~~~~~~~~ 73 (112)
T 1t00_A 22 NDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDK-IEIVKLNI---------------------------DENPGTAAKY 73 (112)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEET---------------------------TTCHHHHHHT
T ss_pred CCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCC-eEEEEEEc---------------------------CCCHHHHHhC
Confidence 5799999999999999999999999999999764 88999965 3456899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
+|.++|+++++ ++|+++.++.|..+.+.+.++|+++++
T Consensus 74 ~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~ 111 (112)
T 1t00_A 74 GVMSIPTLNVY-QGGEVAKTIVGAKPKAAIVRDLEDFIA 111 (112)
T ss_dssp TCCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHTHHHHC
T ss_pred CCCcccEEEEE-eCCEEEEEEeCCCCHHHHHHHHHHHhh
Confidence 99999998888 899999999999989999998887663
|
| >2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.9e-12 Score=120.91 Aligned_cols=90 Identities=23% Similarity=0.341 Sum_probs=75.3
Q ss_pred ccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 450 ~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
+.++|++||+||++||++|+.+.|.|.+++++++ ++.++.|+++ +.+.++++
T Consensus 21 ~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~--~v~~~~vd~~--------------------------~~~~~~~~ 72 (111)
T 2pu9_C 21 AAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL--DVIFLKLDCN--------------------------QENKTLAK 72 (111)
T ss_dssp TCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECS--------------------------STTHHHHH
T ss_pred hcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCC--CeEEEEEecC--------------------------cchHHHHH
Confidence 3468999999999999999999999999999987 3888888641 24578999
Q ss_pred HhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 530 ELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
.|+|.++|+ ++++++|+++.++.|.. .+.+.++|+.++
T Consensus 73 ~~~v~~~Pt-~~~~~~G~~~~~~~G~~-~~~l~~~l~~~~ 110 (111)
T 2pu9_C 73 ELGIRVVPT-FKILKENSVVGEVTGAK-YDKLLEAIQAAR 110 (111)
T ss_dssp HHCCSBSSE-EEEESSSSEEEEEESSC-HHHHHHHHHHHH
T ss_pred HcCCCeeeE-EEEEeCCcEEEEEcCCC-HHHHHHHHHHhh
Confidence 999999999 55669999999999874 777877777654
|
| >1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2.1e-12 Score=122.41 Aligned_cols=89 Identities=24% Similarity=0.371 Sum_probs=79.6
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+|++||+||++||++|+.+.|.|+++++++++ ++.++.|++ |.+.++++.|
T Consensus 30 ~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~-~v~~~~vd~---------------------------d~~~~l~~~~ 81 (119)
T 1w4v_A 30 SETPVVVDFHAQWCGPCKILGPRLEKMVAKQHG-KVVMAKVDI---------------------------DDHTDLAIEY 81 (119)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-SSEEEEEET---------------------------TTTHHHHHHT
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeC---------------------------CCCHHHHHHc
Confidence 578999999999999999999999999999876 488999965 3456799999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
+|.++|+++++ ++|+++.++.|..+.+.+.++|++++
T Consensus 82 ~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l 118 (119)
T 1w4v_A 82 EVSAVPTVLAM-KNGDVVDKFVGIKDEDQLEAFLKKLI 118 (119)
T ss_dssp TCCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CCCcccEEEEE-eCCcEEEEEcCCCCHHHHHHHHHHHh
Confidence 99999999999 89999999999988999998888765
|
| >3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.1e-12 Score=120.78 Aligned_cols=91 Identities=19% Similarity=0.328 Sum_probs=75.7
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
++|++||+||++||++|+.+.|.|.+++++++..++.++.|++ |.+.++++.|
T Consensus 20 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~---------------------------~~~~~~~~~~ 72 (112)
T 3d6i_A 20 GDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDA---------------------------DENSEISELF 72 (112)
T ss_dssp TTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEET---------------------------TTCHHHHHHT
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEec---------------------------ccCHHHHHHc
Confidence 4899999999999999999999999999997545689999965 3456899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLF 571 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~ 571 (1089)
+|.++|+++++ ++|+++.++.|.. .+++.++|++++..
T Consensus 73 ~v~~~Pt~~~~-~~G~~~~~~~G~~-~~~l~~~l~~~~~~ 110 (112)
T 3d6i_A 73 EISAVPYFIII-HKGTILKELSGAD-PKEYVSLLEDCKNS 110 (112)
T ss_dssp TCCSSSEEEEE-ETTEEEEEECSCC-HHHHHHHHHHHHHH
T ss_pred CCCcccEEEEE-ECCEEEEEecCCC-HHHHHHHHHHHHhh
Confidence 99999999988 7999999999974 45688888877653
|
| >1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.1e-12 Score=123.40 Aligned_cols=87 Identities=24% Similarity=0.433 Sum_probs=76.0
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
++|++||+||++||++|+.+.|.|++++++|+ ++.++.|++ |.+.+++++|
T Consensus 37 ~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~--~v~~~~vd~---------------------------d~~~~l~~~~ 87 (124)
T 1xfl_A 37 SKTLVVVDFTASWCGPCRFIAPFFADLAKKLP--NVLFLKVDT---------------------------DELKSVASDW 87 (124)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS--SEEEEEEET---------------------------TTSHHHHHHT
T ss_pred cCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--CcEEEEEEC---------------------------ccCHHHHHHc
Confidence 68999999999999999999999999999987 599999964 4566899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
+|.++|+++++ ++|+++.++.|. +.+.+.++|++++
T Consensus 88 ~v~~~Pt~~~~-~~G~~~~~~~G~-~~~~l~~~l~~~l 123 (124)
T 1xfl_A 88 AIQAMPTFMFL-KEGKILDKVVGA-KKDELQSTIAKHL 123 (124)
T ss_dssp TCCSSSEEEEE-ETTEEEEEEESC-CHHHHHHHHHHHC
T ss_pred CCCccCEEEEE-ECCEEEEEEeCC-CHHHHHHHHHHhc
Confidence 99999998887 899999999984 7777877776653
|
| >1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-12 Score=126.77 Aligned_cols=95 Identities=16% Similarity=0.094 Sum_probs=78.4
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+|+|||+|||+||++|+.+.|.|+++++++++. +.++.|++ |.+.++++.|
T Consensus 22 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~vd~---------------------------d~~~~~~~~~ 73 (142)
T 1qgv_A 22 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNF-AVIYLVDI---------------------------TEVPDFNKMY 73 (142)
T ss_dssp SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT-EEEEEEET---------------------------TTCCTTTTSS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC-eEEEEEcc---------------------------ccCHHHHHHc
Confidence 4899999999999999999999999999999754 99999965 3445688999
Q ss_pred CCCceeEEEEECCCCcEEEE---------ecCCCc-hhhHHHHHHHHHHHhccc
Q 001380 532 GVNSWPTFAVVGPNGKLLAQ---------LAGEGH-RKDLDDLVEAALLFYGKK 575 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~---------~~G~~~-~~~l~~~l~~~l~~~~~~ 575 (1089)
+|.++|+++++ .+|+++.. +.|... .+++.+.|+.+++.....
T Consensus 74 ~i~~~Pt~~~~-~~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~~~~~~ 126 (142)
T 1qgv_A 74 ELYDPCTVMFF-FRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGARKG 126 (142)
T ss_dssp CSCSSCEEEEE-ETTEEEEEECC------CCSCCSCHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCEEEEE-ECCcEEEEecCCCCcceeeeecCcHHHHHHHHHHHHHHHhcC
Confidence 99999999999 68988874 344443 788889998888765433
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.35 E-value=8e-11 Score=136.06 Aligned_cols=222 Identities=12% Similarity=0.028 Sum_probs=141.9
Q ss_pred CCCceEEEeecCCeEEEEeC---------CCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCE
Q 001380 601 KFPGKLAIDILNNRLFISDS---------NHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNL 670 (1089)
Q Consensus 601 ~~P~~vavd~~~g~L~vsd~---------~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~ 670 (1089)
..| ++++++++.+|||+++ ..+.|.++|.. ++.+..|..++...+. .-..|.+++++++|++
T Consensus 119 ~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~-------~g~~P~~~~~spDGk~ 190 (426)
T 3c75_H 119 FLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFL-------VGTYQWMNALTPDNKN 190 (426)
T ss_dssp SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC-------BSCCGGGSEECTTSSE
T ss_pred CCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccc-------cCCCcceEEEcCCCCE
Confidence 358 9999998889999996 35689999986 6777766543111100 1247999999999999
Q ss_pred EEEEECC-CCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCcee----EEE----------------------
Q 001380 671 LYVADTE-NHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWD----VCY---------------------- 723 (1089)
Q Consensus 671 lyVaD~~-n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~----la~---------------------- 723 (1089)
+||++.. .+.|.+||+.++++..-...+.. ....|.+ +++
T Consensus 191 lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-------------~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~ 257 (426)
T 3c75_H 191 LLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-------------YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTE 257 (426)
T ss_dssp EEEEECSSSCEEEEEETTTTEEEEEEECCSE-------------EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECC
T ss_pred EEEEecCCCCeEEEEECCCCeEEEEEEcCCc-------------eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeee
Confidence 9999975 78999999998776433222110 0011222 333
Q ss_pred ---------------ecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCce---EEEcCCCC
Q 001380 724 ---------------KPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSG---ISLSPDFM 785 (1089)
Q Consensus 724 ---------------~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~g---lav~~~g~ 785 (1089)
+++++.+|+... .+.|+.+|..++.+.....- . ...... ......|.| ++++++++
T Consensus 258 ~~~v~~~p~~~~~~~~~dg~~~~~~s~-~g~V~ViD~~~~~~~v~~~~--~--~~~~~~-i~~g~~p~g~~~va~s~dg~ 331 (426)
T 3c75_H 258 VFHTEDELLINHPAFSLRSGRLVWPTY-TGKIFQADLTAEGATFRAPI--E--ALTEAE-RADDWRPGGWQQTAYHRQSD 331 (426)
T ss_dssp CCSCTTSCBCSCCEECTTTCEEEEEBT-TSEEEEEEECSSCEEECCCE--E--SSCTTT-GGGTEEECSSSCEEEEGGGT
T ss_pred eeccCCCceeeEeeecCCCCEEEEEeC-CCcEEEEeccCCceEEeeee--e--eccccc-cccccccCCceeeEEcCCCC
Confidence 444444444432 24455555444333221100 0 000000 001113555 89999999
Q ss_pred EEEEEeC---------CCCeEEEEEcCCCCeE-EEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc--EEEE
Q 001380 786 EIYVADS---------ESSSIRALNLKTGGSR-LLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ--IYVA 853 (1089)
Q Consensus 786 ~lyvad~---------~~~~I~~~~~~~~~~~-~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~--lyVa 853 (1089)
++||++. .++.|.+||..+..+. .+..+ ..|.+|++++||+ +|++
T Consensus 332 rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-----------------------~~P~gia~spDg~~~lyv~ 388 (426)
T 3c75_H 332 RIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-----------------------HEIDSINVSQDAEPLLYAL 388 (426)
T ss_dssp EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-----------------------EEECEEEECCSSSCEEEEE
T ss_pred EEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-----------------------CCcCeEEEccCCCEEEEEE
Confidence 9999974 2458999999887654 22211 2599999999986 8999
Q ss_pred eCCCCEEEEEeCCCCeEEE
Q 001380 854 DSYNHKIKKLDPASNRVST 872 (1089)
Q Consensus 854 D~~n~~I~~~d~~~~~v~t 872 (1089)
+..++.|.+||.+++++..
T Consensus 389 n~~s~~VsVID~~t~kvv~ 407 (426)
T 3c75_H 389 SAGTQTLHIYDAATGEELR 407 (426)
T ss_dssp ETTTTEEEEEETTTCCEEE
T ss_pred cCCCCeEEEEECCCCCEEE
Confidence 9889999999998887653
|
| >3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.7e-12 Score=119.88 Aligned_cols=89 Identities=22% Similarity=0.447 Sum_probs=79.1
Q ss_pred cCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHH
Q 001380 451 LKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRE 530 (1089)
Q Consensus 451 ~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~ 530 (1089)
+++|++||+||++||++|+.+.|.+++++++++++ +.++.|++ |.+.++++.
T Consensus 17 ~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~v~~---------------------------~~~~~~~~~ 68 (106)
T 3die_A 17 VESGVQLVDFWATACGPCKMIAPVLEELAADYEGK-ADILKLDV---------------------------DENPSTAAK 68 (106)
T ss_dssp SCSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTT-CEEEEEET---------------------------TTCHHHHHH
T ss_pred hcCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-cEEEEEEC---------------------------CcCHHHHHh
Confidence 38899999999999999999999999999999865 88888865 456689999
Q ss_pred hCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 531 LGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 531 ~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
|+|.++|+++++ ++|+++.++.|..+.+.+.++|+++
T Consensus 69 ~~v~~~Pt~~~~-~~G~~~~~~~g~~~~~~l~~~l~~~ 105 (106)
T 3die_A 69 YEVMSIPTLIVF-KDGQPVDKVVGFQPKENLAEVLDKH 105 (106)
T ss_dssp TTCCSBSEEEEE-ETTEEEEEEESCCCHHHHHHHHHTT
T ss_pred CCCcccCEEEEE-eCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 999999999999 5999999999998988888887653
|
| >3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282, MCSG, PSI-2, haloacid dehalogenase-like HY structural genomics; 2.45A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.4e-13 Score=148.49 Aligned_cols=128 Identities=12% Similarity=0.082 Sum_probs=101.7
Q ss_pred CCCccHHHHHHHHHhC-CCeEEEEcCC---------------------ChHhHHHHHHHCCCCCCCccEE----------
Q 001380 165 IGFPGALELINQCKSK-GLKVAVASSA---------------------DRIKVDANLAAAGLPVSMFDAI---------- 212 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~-Gi~vaIvSn~---------------------~~~~~~~~l~~~gl~~~~fd~i---------- 212 (1089)
...+++.++++.|+++ |+++++.|+. ....+...++..|+. .+|+.+
T Consensus 122 ~~~~~v~e~l~~l~~~~g~~l~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-~~~~~~~~~~~~~~~~ 200 (289)
T 3gyg_A 122 FSKEKVEKLVKQLHENHNILLNPQTQLGKSRYKHNFYYQEQDEINDKKNLLAIEKICEEYGVS-VNINRCNPLAGDPEDS 200 (289)
T ss_dssp CCHHHHHHHHHHHHHHSSCCCEEGGGTCGGGTTCCEEEECCCHHHHHHHHHHHHHHHHHHTEE-EEEEECCGGGTCCTTE
T ss_pred CCHHHHHHHHHHHHhhhCceeeecccccccceEEEEEEeccccccchHHHHHHHHHHHHcCCC-EEEEEccccccCCCCc
Confidence 4578999999999998 9999999976 456777888888885 666554
Q ss_pred EEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHH
Q 001380 213 VSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLN 292 (1089)
Q Consensus 213 ~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~ 292 (1089)
++.+.....++++..++.+++++|+++++|++|||+.+|+.+++.+|+ .|..+...+++++ .+++++.+..+-.+.
T Consensus 201 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~GDs~~D~~~~~~ag~---~~~~~~~~~~~~~-~a~~v~~~~~~~gv~ 276 (289)
T 3gyg_A 201 YDVDFIPIGTGKNEIVTFMLEKYNLNTERAIAFGDSGNDVRMLQTVGN---GYLLKNATQEAKN-LHNLITDSEYSKGIT 276 (289)
T ss_dssp EEEEEEESCCSHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHTTSSE---EEECTTCCHHHHH-HCCCBCSSCHHHHHH
T ss_pred eEEEEEeCCCCHHHHHHHHHHHcCCChhhEEEEcCCHHHHHHHHhCCc---EEEECCccHHHHH-hCCEEcCCCCcCHHH
Confidence 556667788999999999999999999999999999999999999994 3444444445544 478888887775555
Q ss_pred HHHhc
Q 001380 293 DILTG 297 (1089)
Q Consensus 293 ~ll~~ 297 (1089)
+++..
T Consensus 277 ~~~~~ 281 (289)
T 3gyg_A 277 NTLKK 281 (289)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.34 E-value=6.1e-11 Score=135.02 Aligned_cols=236 Identities=14% Similarity=0.149 Sum_probs=141.9
Q ss_pred cCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEE-EEecCCCCCCCCCCCCcccccccCCceeEEEecC---CCEEE
Q 001380 656 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVR-TLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPI---NEKVY 731 (1089)
Q Consensus 656 f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~-~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~---g~~ly 731 (1089)
+..|.+|+++++|+.|||++. .++|++++.+ +... .+++...-. ......|.+|+++|+ ++.||
T Consensus 17 l~~P~~i~~~pdG~~l~V~e~-~G~i~~~~~~-g~~~~~~~~~~~v~----------~~g~~g~~gia~~pdf~~~g~lY 84 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITLR-GGELRHWQAG-KGLSAPLSGVPDVW----------AHGQGGLLDVVLAPDFAQSRRIW 84 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEET-TTEEEEEETT-TEECCCCBSCCCCC----------CSTTCSEEEEEECTTHHHHCEEE
T ss_pred CCCcEEEEEcCCCCEEEEEeC-CceEEEEeCC-CceeeEecCCcccc----------cCCCCCceeEEECCCCCCCCEEE
Confidence 678999999999876899997 4799999964 4433 333221100 011236799999996 66999
Q ss_pred EEECC-------CcEEEEEECCCC--eE---EE-EeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCC-----
Q 001380 732 IAMAG-------QHQIWEHSTVDG--VT---RA-FSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSE----- 793 (1089)
Q Consensus 732 vad~~-------~~~I~~~~~~~g--~~---~~-~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~----- 793 (1089)
|++.. .++|++++..++ .+ +. +.+.. ........+.+|++++|| +|||+...
T Consensus 85 v~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p---------~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~ 154 (353)
T 2g8s_A 85 LSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMP---------KLSTGNHFGGRLVFDGKG-YLFIALGENNQRP 154 (353)
T ss_dssp EEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSS---------CCBSSSCCCCCEEECSSS-EEEEEECCTTCGG
T ss_pred EEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECC---------CCCCCcccCccEEECCCC-cEEEEECCCCCCC
Confidence 99865 468888876543 22 11 11110 001234568899999999 99999633
Q ss_pred --------CCeEEEEEcCCCCeEEEecCCCCCCCCccccCCC-CCccccccccCceEEEEcc-CCcEEEEeCCCC---EE
Q 001380 794 --------SSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDR-DGMGSEVLLQHPLGVYCAK-NGQIYVADSYNH---KI 860 (1089)
Q Consensus 794 --------~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~-dg~~~~~~l~~P~gva~~~-~G~lyVaD~~n~---~I 860 (1089)
.++|.++++++. +..+ +.|..... .......-+.+|.|+++|+ +|+||++|.+.+ +|
T Consensus 155 ~~q~~~~~~g~I~ri~~dG~----~p~~------npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei 224 (353)
T 2g8s_A 155 TAQDLDKLQGKLVRLTDQGE----IPDD------NPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEI 224 (353)
T ss_dssp GGGCTTSCTTEEEEEETTSC----CCTT------CTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEE
T ss_pred ccCCCCCCCeEEEEECCCCC----CCCC------CCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEE
Confidence 358999998742 1112 22211000 0000112256899999999 899999998754 55
Q ss_pred EEEeCCCCe----EE---EEecc--------CCCCCCCCcccccccCCCceEEEcc-------CCcEEEEECCCCEEEEE
Q 001380 861 KKLDPASNR----VS---TLAGI--------GKAGFKDGAALAAQLSEPAGIIEAQ-------NGNLFIADTNNNIIRYL 918 (1089)
Q Consensus 861 ~~~d~~~~~----v~---t~~g~--------g~~g~~~g~~~~~~l~~P~gi~vd~-------~G~lyVad~~n~~I~~~ 918 (1089)
.++.+.++. +. .+.+. ...++..-......-..|.|+++.. +|++||++...++|.++
T Consensus 225 ~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~ 304 (353)
T 2g8s_A 225 NIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVM 304 (353)
T ss_dssp ECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEE
T ss_pred eEeccCCcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEE
Confidence 555432211 00 00000 0000000000001124689999963 57899999999999999
Q ss_pred eCCCC
Q 001380 919 DLNKE 923 (1089)
Q Consensus 919 ~~~~~ 923 (1089)
++++.
T Consensus 305 ~~~~~ 309 (353)
T 2g8s_A 305 SVNGD 309 (353)
T ss_dssp EEETT
T ss_pred EeCCC
Confidence 99864
|
| >3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.34 E-value=3.5e-12 Score=118.94 Aligned_cols=90 Identities=21% Similarity=0.436 Sum_probs=80.9
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
++|++||+||++||++|+.+.|.+.++++++++ .+.++.|++ |.+.+++++|
T Consensus 21 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~---------------------------~~~~~l~~~~ 72 (111)
T 3gnj_A 21 EGKACLVMFSRKNCHVCQKVTPVLEELRLNYEE-SFGFYYVDV---------------------------EEEKTLFQRF 72 (111)
T ss_dssp SCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTT-TSEEEEEET---------------------------TTCHHHHHHT
T ss_pred cCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCC-ceEEEEEEC---------------------------CcChhHHHhc
Confidence 579999999999999999999999999999986 488888865 4566899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
+|.++|+++++ ++|+++.++.|..+.+.+.++|++++.
T Consensus 73 ~v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~l~ 110 (111)
T 3gnj_A 73 SLKGVPQILYF-KDGEYKGKMAGDVEDDEVEQMIADVLE 110 (111)
T ss_dssp TCCSSCEEEEE-ETTEEEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCcCCEEEEE-ECCEEEEEEeccCCHHHHHHHHHHHhc
Confidence 99999999999 899999999999999999999988764
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.8e-10 Score=137.35 Aligned_cols=265 Identities=12% Similarity=0.113 Sum_probs=177.2
Q ss_pred CCceEEEeecCCeEEEEeCCCCEEEEEeC---CCCEEEEEecCCCCCCCCCCCCccccCCcceeEEe----eCCCEEEEE
Q 001380 602 FPGKLAIDILNNRLFISDSNHNRIVVTDL---DGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYN----AKKNLLYVA 674 (1089)
Q Consensus 602 ~P~~vavd~~~g~L~vsd~~~~~I~~~~~---~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d----~~g~~lyVa 674 (1089)
.|.++++++++.+|||++. .+.|.++|. .++.+.++..+ ..|.+++++ |+|+++||+
T Consensus 198 ~p~~v~~SpDGr~lyv~~~-dg~V~viD~~~~t~~~v~~i~~G---------------~~P~~ia~s~~~~pDGk~l~v~ 261 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGR-DGKVNMIDLWMKEPTTVAEIKIG---------------SEARSIETSKMEGWEDKYAIAG 261 (567)
T ss_dssp CEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCCEEEEEECC---------------SEEEEEEECCSTTCTTTEEEEE
T ss_pred CccceEECCCCCEEEEEcC-CCeEEEEECCCCCCcEeEEEecC---------------CCCceeEEccccCCCCCEEEEE
Confidence 5778999997788999875 679999998 56777776543 268999999 699999999
Q ss_pred ECCCCEEEEEECCCCeEEEEecCCCCCCCC-----C---------------------CCCc-------------cccccc
Q 001380 675 DTENHALREIDFVNDTVRTLAGNGTKGSDY-----Q---------------------GGEK-------------GTSQLL 715 (1089)
Q Consensus 675 D~~n~~I~~~d~~~g~v~~~ag~g~~~~~~-----~---------------------~~~~-------------~~~~~l 715 (1089)
+...+.|..+|..+.++......+....+. . .+.. ..-..-
T Consensus 262 n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~ 341 (567)
T 1qks_A 262 AYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE 341 (567)
T ss_dssp EEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECC
T ss_pred EccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeecc
Confidence 999999999998776544333222110000 0 0000 000011
Q ss_pred CCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCC-ceEE-EcCCCCEEEEEeC-
Q 001380 716 NSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQP-SGIS-LSPDFMEIYVADS- 792 (1089)
Q Consensus 716 ~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P-~gla-v~~~g~~lyvad~- 792 (1089)
..|+++.|+++|.++|+++.+.++|..+|..++++......| ....+| .|+. ++|+++.+|++..
T Consensus 342 ~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vg------------g~~Phpg~g~~~~~p~~g~v~~t~~~ 409 (567)
T 1qks_A 342 RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTG------------GQTPHPGRGANFVHPTFGPVWATSHM 409 (567)
T ss_dssp SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS------------SSSBCCTTCEEEEETTTEEEEEEEBS
T ss_pred ccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEecc------------CcCCCCccceeeECCCCCcEEEeCCC
Confidence 367899999999999999999999999999999876544320 011234 3665 4788668998764
Q ss_pred CCCeEEEEEcCCC--------CeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCC-cEEEEeCC------C
Q 001380 793 ESSSIRALNLKTG--------GSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNG-QIYVADSY------N 857 (1089)
Q Consensus 793 ~~~~I~~~~~~~~--------~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G-~lyVaD~~------n 857 (1089)
+++.|..|+.+++ .+..+.+. | ..+..|...++| ++||+... .
T Consensus 410 g~~~Vsvid~~~~~~~~~~~kvv~~i~~~---------------g-------~g~~~i~~~p~~~~l~v~~~~~~~~~~~ 467 (567)
T 1qks_A 410 GDDSVALIGTDPEGHPDNAWKILDSFPAL---------------G-------GGSLFIKTHPNSQYLYVDATLNPEAEIS 467 (567)
T ss_dssp SSSEEEEEECCTTTCTTTBTSEEEEEECS---------------C-------SCCCCEECCTTCSEEEEECTTCSSHHHH
T ss_pred CCCeEEEecCCCCCCccccCEEEEEEecC---------------C-------CCCEEEEeCCCCCeEEEecCCCCCcccC
Confidence 6689999998752 12333221 0 245668888888 68887754 3
Q ss_pred CEEEEEeCCCCeE-------EEEeccCC-CCCCCCcccccccCCCceEEEccCCc-EEEEECC----CCEEEEEeCCCC
Q 001380 858 HKIKKLDPASNRV-------STLAGIGK-AGFKDGAALAAQLSEPAGIIEAQNGN-LFIADTN----NNIIRYLDLNKE 923 (1089)
Q Consensus 858 ~~I~~~d~~~~~v-------~t~~g~g~-~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~~----n~~I~~~~~~~~ 923 (1089)
+.|.+||.++..+ ..+. .+. .+... .-..|..+.++++|+ |||+.++ .+.|.++|..+.
T Consensus 468 ~~v~v~d~~~~~~~g~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~ 539 (567)
T 1qks_A 468 GSVAVFDIKAMTGDGSDPEFKTLP-IAEWAGITE------GQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL 539 (567)
T ss_dssp TCEEEEEGGGCCCSSSCCCEEEEC-HHHHHTCCS------SCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred ceEEEEECCcccccccCCCcEEec-cccccccCC------CCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCc
Confidence 5899999765511 2331 000 00000 013578899999995 9999764 699999998887
|
| >1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=3.4e-12 Score=119.80 Aligned_cols=90 Identities=20% Similarity=0.373 Sum_probs=80.9
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+|++||.||++||++|+.+.|.|.++.++++++ +.++.|++ |.+.++++.|
T Consensus 24 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-v~~~~v~~---------------------------~~~~~~~~~~ 75 (115)
T 1thx_A 24 AEQPVLVYFWASWCGPCQLMSPLINLAANTYSDR-LKVVKLEI---------------------------DPNPTTVKKY 75 (115)
T ss_dssp CSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT-CEEEEEES---------------------------TTCHHHHHHT
T ss_pred CCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCc-EEEEEEEc---------------------------CCCHHHHHHc
Confidence 6899999999999999999999999999999865 89999965 3456799999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
+|.++|+++++ ++|+++.++.|..+.+.+.++|++++.
T Consensus 76 ~v~~~Pt~~~~-~~G~~~~~~~g~~~~~~l~~~l~~~l~ 113 (115)
T 1thx_A 76 KVEGVPALRLV-KGEQILDSTEGVISKDKLLSFLDTHLN 113 (115)
T ss_dssp TCCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred CCCceeEEEEE-cCCEEEEEecCCCCHHHHHHHHHHHhc
Confidence 99999999999 999999999999899999999887764
|
| >1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.2e-12 Score=122.69 Aligned_cols=93 Identities=16% Similarity=0.278 Sum_probs=81.9
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCC---CCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD---MPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLW 528 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~---~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~ 528 (1089)
.+|++||+||++||++|+.+.|.+.++++++++ .++.++.|++ |.+.+++
T Consensus 24 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~---------------------------~~~~~l~ 76 (133)
T 1x5d_A 24 SEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDA---------------------------TVNQVLA 76 (133)
T ss_dssp SSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEET---------------------------TTCCHHH
T ss_pred CCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEEC---------------------------CCCHHHH
Confidence 579999999999999999999999999999872 3599999865 3456899
Q ss_pred HHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHHh
Q 001380 529 RELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFY 572 (1089)
Q Consensus 529 ~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~~ 572 (1089)
+.|+|.++|+++++++ |+++.++.|..+.+.+.++|.+++...
T Consensus 77 ~~~~v~~~Pt~~~~~~-g~~~~~~~G~~~~~~l~~~l~~~~~~~ 119 (133)
T 1x5d_A 77 SRYGIRGFPTIKIFQK-GESPVDYDGGRTRSDIVSRALDLFSDN 119 (133)
T ss_dssp HHHTCCSSSEEEEEET-TEEEEEECSCCSHHHHHHHHHHHHHHH
T ss_pred HhCCCCeeCeEEEEeC-CCceEEecCCCCHHHHHHHHHHHhhcc
Confidence 9999999999999976 888899999999999999999988764
|
| >1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.9e-12 Score=119.74 Aligned_cols=87 Identities=26% Similarity=0.411 Sum_probs=77.4
Q ss_pred CCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhC
Q 001380 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELG 532 (1089)
Q Consensus 453 gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~ 532 (1089)
+|++||+||++||++|+.+.|.|+++.+++++ ++.++.|++ |.+.++++.|+
T Consensus 24 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~---------------------------~~~~~~~~~~~ 75 (112)
T 1ep7_A 24 HKPIVVDFTATWCGPCKMIAPLFETLSNDYAG-KVIFLKVDV---------------------------DAVAAVAEAAG 75 (112)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEET---------------------------TTTHHHHHHHT
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHcCC-CeEEEEEEC---------------------------CchHHHHHHcC
Confidence 89999999999999999999999999999986 589999965 44678999999
Q ss_pred CCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 533 VNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 533 v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
|.++|+++++ ++|+++.++.|. +.+.+.++|++++
T Consensus 76 v~~~Pt~~~~-~~G~~~~~~~G~-~~~~l~~~l~~~l 110 (112)
T 1ep7_A 76 ITAMPTFHVY-KDGVKADDLVGA-SQDKLKALVAKHA 110 (112)
T ss_dssp CCBSSEEEEE-ETTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred CCcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHHHh
Confidence 9999997777 899999999998 8888888888765
|
| >2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2.3e-12 Score=118.34 Aligned_cols=89 Identities=24% Similarity=0.459 Sum_probs=79.9
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
++|++||.||++||++|+.+.|.+.++.+++++ +.++.|++ |.+.++++.|
T Consensus 15 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~v~~---------------------------~~~~~~~~~~ 65 (104)
T 2e0q_A 15 SHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ--VGFGKLNS---------------------------DENPDIAARY 65 (104)
T ss_dssp HSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEET---------------------------TTCHHHHHHT
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC--ceEEEEEC---------------------------CCCHHHHHhC
Confidence 579999999999999999999999999999975 88888865 4456799999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
++.++|+++++ ++|+++.++.|..+.+.+.++|+.++.
T Consensus 66 ~v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~l~ 103 (104)
T 2e0q_A 66 GVMSLPTVIFF-KDGEPVDEIIGAVPREEIEIRIKNLLG 103 (104)
T ss_dssp TCCSSCEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred CccccCEEEEE-ECCeEhhhccCCCCHHHHHHHHHHHhc
Confidence 99999999999 899999999999899999999887764
|
| >3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-12 Score=126.46 Aligned_cols=90 Identities=20% Similarity=0.330 Sum_probs=79.7
Q ss_pred cCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHH
Q 001380 451 LKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRE 530 (1089)
Q Consensus 451 ~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~ 530 (1089)
.+||++||+||++||++|+.+.|.|++++++++ ++.++.|++ |.+.++++.
T Consensus 44 ~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~--~v~~~~v~~---------------------------~~~~~~~~~ 94 (139)
T 3d22_A 44 RDGKIVLANFSARWCGPSRQIAPYYIELSENYP--SLMFLVIDV---------------------------DELSDFSAS 94 (139)
T ss_dssp HHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEET---------------------------TTSHHHHHH
T ss_pred hcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--CCEEEEEeC---------------------------cccHHHHHH
Confidence 468999999999999999999999999999985 588888865 445689999
Q ss_pred hCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHH
Q 001380 531 LGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLF 571 (1089)
Q Consensus 531 ~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~ 571 (1089)
|+|.++|+++++ ++|+++.++.|. ..+.+.++|+.+++.
T Consensus 95 ~~v~~~Pt~~~~-~~G~~~~~~~G~-~~~~l~~~l~~~~~~ 133 (139)
T 3d22_A 95 WEIKATPTFFFL-RDGQQVDKLVGA-NKPELHKKITAILDS 133 (139)
T ss_dssp TTCCEESEEEEE-ETTEEEEEEESC-CHHHHHHHHHHHHHT
T ss_pred cCCCcccEEEEE-cCCeEEEEEeCC-CHHHHHHHHHHHhcc
Confidence 999999999888 999999999998 788898888887764
|
| >3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... | Back alignment and structure |
|---|
Probab=99.33 E-value=3.1e-12 Score=117.95 Aligned_cols=88 Identities=25% Similarity=0.438 Sum_probs=77.9
Q ss_pred ccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 450 ~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
+.++|++||+||++||++|+.+.|.+.++++++++ +.++.|+. |...++++
T Consensus 17 ~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~vd~---------------------------~~~~~~~~ 67 (105)
T 3m9j_A 17 AAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN--VIFLEVDV---------------------------DDCQDVAS 67 (105)
T ss_dssp HTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT--SEEEEEET---------------------------TTCHHHHH
T ss_pred hcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccC--eEEEEEEh---------------------------hhhHHHHH
Confidence 34689999999999999999999999999999975 88888854 45568999
Q ss_pred HhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 530 ELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
.|+|.++|+++++ ++|+++.++.|. +.+.+.++|+++
T Consensus 68 ~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~l~~~ 104 (105)
T 3m9j_A 68 ESEVKSMPTFQFF-KKGQKVGEFSGA-NKEKLEATINEL 104 (105)
T ss_dssp HTTCCBSSEEEEE-ETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred HcCCCcCcEEEEE-ECCeEEEEEeCC-CHHHHHHHHHHh
Confidence 9999999999999 899999999998 888888888765
|
| >1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-12 Score=130.81 Aligned_cols=90 Identities=17% Similarity=0.194 Sum_probs=69.0
Q ss_pred cccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHH
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLW 528 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~ 528 (1089)
++++||++||+|||+||++|+.++|.|++++++++ ++.++.|+. ++ +.+++
T Consensus 50 ~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~--~v~~~~v~~-----d~----------------------~~~~~ 100 (167)
T 1z6n_A 50 QRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP--NIELAIISK-----GR----------------------AEDDL 100 (167)
T ss_dssp HTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT--TEEEEEECH-----HH----------------------HHHHT
T ss_pred HHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC--CcEEEEEEC-----CC----------------------CHHHH
Confidence 56789999999999999999999999999999886 488888843 22 22344
Q ss_pred HHh---CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 529 REL---GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 529 ~~~---~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
+.| ++.++||++++|.+|+++.++. . .+..+.+.+.+..
T Consensus 101 ~~~~~~~v~~iPt~i~~~~~G~~~~~~g-~-~p~~~~~~i~~~~ 142 (167)
T 1z6n_A 101 RQRLALERIAIPLVLVLDEEFNLLGRFV-E-RPQAVLDGGPQAL 142 (167)
T ss_dssp TTTTTCSSCCSSEEEEECTTCCEEEEEE-S-SCHHHHHHCHHHH
T ss_pred HHHHHcCCCCcCeEEEECCCCCEEEEEc-C-CCHHHHHhHHHHH
Confidence 444 4999999999999999988773 3 3344555555543
|
| >2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} | Back alignment and structure |
|---|
Probab=99.33 E-value=4e-12 Score=117.61 Aligned_cols=87 Identities=28% Similarity=0.459 Sum_probs=78.0
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+|++||.||++||++|+.+.|.|.++.+++++ ++.++.|++ |.+.++++.|
T Consensus 19 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~---------------------------~~~~~~~~~~ 70 (107)
T 2i4a_A 19 ASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAG-KVTVAKVNI---------------------------DDNPETPNAY 70 (107)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTT-SEEEEEEET---------------------------TTCCHHHHHT
T ss_pred CCCEEEEEEECCCChhHHHHhHHHHHHHHHhCC-cEEEEEEEC---------------------------CCCHHHHHhc
Confidence 679999999999999999999999999999986 599999965 3456899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEA 567 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~ 567 (1089)
+|.++|+++++ ++|+++.++.|..+.+.+.++|++
T Consensus 71 ~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~ 105 (107)
T 2i4a_A 71 QVRSIPTLMLV-RDGKVIDKKVGALPKSQLKAWVES 105 (107)
T ss_dssp TCCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHH
T ss_pred CCCccCEEEEE-eCCEEEEEecCCCCHHHHHHHHHh
Confidence 99999999999 999999999999888888888765
|
| >3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-12 Score=126.09 Aligned_cols=91 Identities=19% Similarity=0.324 Sum_probs=75.0
Q ss_pred cccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHH
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLW 528 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~ 528 (1089)
++.+||++||+||++||++|+.+.|.|+++.+++ ++.++.|.+ |.+.+++
T Consensus 36 ~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~---~v~~~~vd~---------------------------~~~~~l~ 85 (133)
T 3cxg_A 36 SSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY---YVTLVDIDV---------------------------DIHPKLN 85 (133)
T ss_dssp TC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE---ECEEEEEET---------------------------TTCHHHH
T ss_pred HhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc---CEEEEEEec---------------------------cchHHHH
Confidence 4567899999999999999999999999988877 478888854 3466899
Q ss_pred HHhCCCceeEEEEE-CCCCc--EEEEecCCCchhhHHHHHHHHHH
Q 001380 529 RELGVNSWPTFAVV-GPNGK--LLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 529 ~~~~v~~~Pt~~li-d~~G~--i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
+.|+|.++|+++++ |++|+ ++.++.|. ..+++.++|++++.
T Consensus 86 ~~~~v~~~Pt~~~~~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l~ 129 (133)
T 3cxg_A 86 DQHNIKALPTFEFYFNLNNEWVLVHTVEGA-NQNDIEKAFQKYCL 129 (133)
T ss_dssp HHTTCCSSSEEEEEEEETTEEEEEEEEESC-CHHHHHHHHHHHSE
T ss_pred HhcCCCCCCEEEEEEecCCCeEEEEEEcCC-CHHHHHHHHHHHHH
Confidence 99999999999999 44555 88899988 77888888776653
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.6e-11 Score=129.18 Aligned_cols=222 Identities=9% Similarity=0.069 Sum_probs=149.1
Q ss_pred CCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCC--CCCCCCCCcccccccCCceeEEE---ecCCCEEE
Q 001380 657 NRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTK--GSDYQGGEKGTSQLLNSPWDVCY---KPINEKVY 731 (1089)
Q Consensus 657 ~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~--~~~~~~~~~~~~~~l~~P~~la~---~~~g~~ly 731 (1089)
-.|.++++|+.+..+|+++..++.|.++++.++.+..+.-.+.. +. ....|.||.+ |+. ++||
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~-----------~~~~~sGl~~~~~D~~-grL~ 80 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGD-----------GEQQMSGLSLLTHDNS-KRLF 80 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSC-----------CSEEEEEEEESSSSSC-CEEE
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCC-----------CcceeeEEEEeccCCC-CcEE
Confidence 47999999987788999999999999999987665554211111 11 1235789999 788 4888
Q ss_pred EE-EC------------CCcEEEEEECC---CCeEEEEeC-CCccc---cCCCCCCCCccccCCceEEEcCCCCEEEEEe
Q 001380 732 IA-MA------------GQHQIWEHSTV---DGVTRAFSG-DGYER---NLNGSSSLNTSFAQPSGISLSPDFMEIYVAD 791 (1089)
Q Consensus 732 va-d~------------~~~~I~~~~~~---~g~~~~~~g-~g~~~---~~~g~~~~~~~~~~P~glav~~~g~~lyvad 791 (1089)
|+ +. +.+.|.+||+. ++....... ++... ..+| ..+..+.++++|++| ++||++
T Consensus 81 vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g-----~~~~~~nDvavD~~G-naYVt~ 154 (334)
T 2p9w_A 81 AVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAG-----KRPFGVVQSAQDRDG-NSYVAF 154 (334)
T ss_dssp EEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHS-----SCCEEEEEEEECTTS-CEEEEE
T ss_pred EEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCcccccccccccc-----ccccCCceeEECCCC-CEEEeC
Confidence 84 42 46889999988 555443332 11000 0000 123458899999998 999999
Q ss_pred CCC-CeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEEEeCCCCEEEEEeCCCCe
Q 001380 792 SES-SSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADSYNHKIKKLDPASNR 869 (1089)
Q Consensus 792 ~~~-~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~~n~~I~~~d~~~~~ 869 (1089)
+.. +.|.++++++..+....-.. . .......+.||++.|+|+ |+|+++ .++|.+||.....
T Consensus 155 s~~~~~I~rV~pdG~~~~~~~~~~----------~------~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~pv 217 (334)
T 2p9w_A 155 ALGMPAIARVSADGKTVSTFAWES----------G------NGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKPY 217 (334)
T ss_dssp EESSCEEEEECTTSCCEEEEEECC----------C------CSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSSS
T ss_pred CCCCCeEEEEeCCCCEEeeeeecC----------C------CcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCCc
Confidence 999 99999999876444332110 0 001235688999999995 777777 9999999987322
Q ss_pred EEEEecc--CCCCCCCCcccccccCCCceE-EEccCCcE-EEEECCCCEEEEEeCCC
Q 001380 870 VSTLAGI--GKAGFKDGAALAAQLSEPAGI-IEAQNGNL-FIADTNNNIIRYLDLNK 922 (1089)
Q Consensus 870 v~t~~g~--g~~g~~~g~~~~~~l~~P~gi-~vd~~G~l-yVad~~n~~I~~~~~~~ 922 (1089)
...+.-. |.. ..+..|.+| .+..+|++ +|++..++++...+.++
T Consensus 218 ~~~v~~~~~G~~---------~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 218 AWPEPVKINGDF---------GTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp CCCEECEESSCC---------CCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred ceeecccccCCc---------ccccCcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence 1012111 111 256779996 66668875 99998888877777766
|
| >2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-12 Score=124.80 Aligned_cols=91 Identities=13% Similarity=0.085 Sum_probs=80.7
Q ss_pred CCCEEEEEEecCC--CcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 452 KGKVVVLDFWTYC--CINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 452 ~gk~vll~Fwa~w--C~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
.+++|||+|||.| |++|+.+.|.|.++.++|.++.+.++-|.+ |.+.+++.
T Consensus 33 ~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdv---------------------------De~~~lA~ 85 (140)
T 2qgv_A 33 QAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADL---------------------------EQSEAIGD 85 (140)
T ss_dssp TCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCH---------------------------HHHHHHHH
T ss_pred CCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEEC---------------------------CCCHHHHH
Confidence 5678999999999 999999999999999999764377777743 56779999
Q ss_pred HhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 530 ELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
+|||+++||++++ ++|+++.+..|....+++.++|+..++
T Consensus 86 ~ygV~sIPTlilF-k~G~~v~~~~G~~~k~~l~~~i~~~l~ 125 (140)
T 2qgv_A 86 RFGAFRFPATLVF-TGGNYRGVLNGIHPWAELINLMRGLVE 125 (140)
T ss_dssp HHTCCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred HcCCccCCEEEEE-ECCEEEEEEecCCCHHHHHHHHHHHhc
Confidence 9999999999999 999999999999999999999988774
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.32 E-value=5.1e-10 Score=128.38 Aligned_cols=234 Identities=10% Similarity=0.038 Sum_probs=137.0
Q ss_pred CCceEEEeecCCeEEEEeC---------CCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEE
Q 001380 602 FPGKLAIDILNNRLFISDS---------NHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLL 671 (1089)
Q Consensus 602 ~P~~vavd~~~g~L~vsd~---------~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~l 671 (1089)
.| +++++|++..|||++. ..+.|.++|.. ++.+.++..++...+. .-..|.+++++|+|++|
T Consensus 68 ~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~-------~g~~p~~~~~spDG~~l 139 (373)
T 2mad_H 68 LP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFD-------VGPYSWMNANTPNNADL 139 (373)
T ss_pred CC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccc-------cCCCccceEECCCCCEE
Confidence 47 9999998889999985 25679999986 6666666443111000 01479999999999999
Q ss_pred EEEECC-CCEEEEEECCCCeEEEE-ecCCCCCC--CC---------CCCC------ccccc---------ccCCc--eeE
Q 001380 672 YVADTE-NHALREIDFVNDTVRTL-AGNGTKGS--DY---------QGGE------KGTSQ---------LLNSP--WDV 721 (1089)
Q Consensus 672 yVaD~~-n~~I~~~d~~~g~v~~~-ag~g~~~~--~~---------~~~~------~~~~~---------~l~~P--~~l 721 (1089)
||+... .+.|..|| +++++... ...+.... .. .++. .+... .-..| ...
T Consensus 140 ~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~ 218 (373)
T 2mad_H 140 LFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQP 218 (373)
T ss_pred EEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecc
Confidence 999865 68999999 88776543 32221000 00 0000 00000 00000 011
Q ss_pred EEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCce---EEEcCCCCEEEEEeC------
Q 001380 722 CYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSG---ISLSPDFMEIYVADS------ 792 (1089)
Q Consensus 722 a~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~g---lav~~~g~~lyvad~------ 792 (1089)
.+.++++.+|+.. ..++++.+|..++....... .. . ...........|.| +++++++++|||+..
T Consensus 219 ~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~--~~--~-~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~ 292 (373)
T 2mad_H 219 AQANKSGRIVWPV-YSGKILQADISAAGATNKAP--ID--A-LSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWK 292 (373)
T ss_pred eeEecCCEEEEEc-CCceEEEEeccCCcceEeee--ee--e-cCCcccccceecCceEeEEECCCCCEEEEEeccCCccc
Confidence 2223333333333 23455555554432221110 00 0 00000011123555 899999999999864
Q ss_pred ---CCCeEEEEEcCCCCe-EEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc--EEEEeCCCCEEEEEeCC
Q 001380 793 ---ESSSIRALNLKTGGS-RLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ--IYVADSYNHKIKKLDPA 866 (1089)
Q Consensus 793 ---~~~~I~~~~~~~~~~-~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~--lyVaD~~n~~I~~~d~~ 866 (1089)
.++.|.++|..++.+ ..+..+ ..|.++++++||+ +|+++...+.|.+||.+
T Consensus 293 ~~~~~~~V~VID~~t~~vv~~i~~g-----------------------~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~ 349 (373)
T 2mad_H 293 LHAAAKEVTSVTGLVGQTSSQISLG-----------------------HDVDAISVAQDGGPDLYALSAGTEVLHIYDAG 349 (373)
T ss_pred ccCCCCeEEEEECCCCEEEEEEECC-----------------------CCcCeEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence 246899999987765 333221 1599999999996 77888788999999998
Q ss_pred CCeEEEE
Q 001380 867 SNRVSTL 873 (1089)
Q Consensus 867 ~~~v~t~ 873 (1089)
++++...
T Consensus 350 t~~vv~~ 356 (373)
T 2mad_H 350 AGDQDQS 356 (373)
T ss_pred CCCEEee
Confidence 8776544
|
| >2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-12 Score=126.04 Aligned_cols=100 Identities=18% Similarity=0.387 Sum_probs=81.2
Q ss_pred eecccccCCCEEEEEEecCCCcchhhhhhhH---HHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceee
Q 001380 445 LQFRRDLKGKVVVLDFWTYCCINCMHVLPDL---EFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVN 521 (1089)
Q Consensus 445 ~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l---~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 521 (1089)
+.+ ++.+||++||+||++||++|+.+.|.+ .++.+.++. ++.++.|.++ .
T Consensus 20 ~~~-~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~-----~-------------------- 72 (130)
T 2kuc_A 20 LKR-AEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNR-HFVNLKMDME-----K-------------------- 72 (130)
T ss_dssp HHH-HHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHH-HSEEEEECSS-----S--------------------
T ss_pred HHH-HHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhc-CeEEEEEecC-----C--------------------
Confidence 444 446799999999999999999999998 666655543 4777778541 1
Q ss_pred cCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHH
Q 001380 522 DGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLF 571 (1089)
Q Consensus 522 d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~ 571 (1089)
+....+++.|+|.++|+++++|++|+++.++.|....+.+.++|+..+..
T Consensus 73 ~~~~~~~~~~~v~~~Pt~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~~~~ 122 (130)
T 2kuc_A 73 GEGVELRKKYGVHAYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGVES 122 (130)
T ss_dssp TTHHHHHHHTTCCSSCEEEEECTTSCEEEEEESCCCHHHHHHHHHHHHSC
T ss_pred cchHHHHHHcCCCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHHh
Confidence 34568999999999999999999999999999998888898888877653
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.31 E-value=4.7e-10 Score=128.31 Aligned_cols=256 Identities=14% Similarity=0.101 Sum_probs=150.5
Q ss_pred CCeEEEEeCC-----CCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC---------
Q 001380 612 NNRLFISDSN-----HNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT--------- 676 (1089)
Q Consensus 612 ~g~L~vsd~~-----~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~--------- 676 (1089)
..++||+|.+ .+.|.++|.+ |+.+.++..+ ..| +++++|+|+++|+++.
T Consensus 15 ~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g---------------~~p-~i~~spdg~~lyv~~~~~~~~~~g~ 78 (361)
T 2oiz_A 15 ENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTA---------------FNG-HVQVSNDGKKIYTMTTYHERITRGK 78 (361)
T ss_dssp GGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECC---------------EEE-EEEECTTSSEEEEEEEEETTSSSSC
T ss_pred CCEEEEECCCCCccccCeEEEEECCCCeEEEEecCC---------------CCC-ceEECCCCCEEEEEEecccccccCC
Confidence 4689999965 4589999975 7777666543 157 9999999999999974
Q ss_pred CCCEEEEEECCCCe-EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC-CcEEEEEECCCCeEEEE-
Q 001380 677 ENHALREIDFVNDT-VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG-QHQIWEHSTVDGVTRAF- 753 (1089)
Q Consensus 677 ~n~~I~~~d~~~g~-v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~-~~~I~~~~~~~g~~~~~- 753 (1089)
..+.|..||..+++ +.++...... ...-..|.+++++|+|++||+++.+ .+.|..||..++.+..-
T Consensus 79 ~~~~v~v~d~~t~~~~~~i~~~~~~-----------~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~ 147 (361)
T 2oiz_A 79 RSDVVEVWDADKLTFEKEISLPPKR-----------VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDV 147 (361)
T ss_dssp EEEEEEEEETTTCCEEEEEEECTTB-----------CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEECcCCcEEEEEEcCccc-----------cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEE
Confidence 24579999998754 4444321110 0012479999999999999999986 78999999998866443
Q ss_pred eCCCccccCCCCCCCCccccCCc----eEEEcCCCCEEEEEeCCCCeEE-EE------EcCCC----------CeEEEec
Q 001380 754 SGDGYERNLNGSSSLNTSFAQPS----GISLSPDFMEIYVADSESSSIR-AL------NLKTG----------GSRLLAG 812 (1089)
Q Consensus 754 ~g~g~~~~~~g~~~~~~~~~~P~----glav~~~g~~lyvad~~~~~I~-~~------~~~~~----------~~~~~~g 812 (1089)
...+... .....|. -++++++|..+|+....++++. .. +...+ ....+..
T Consensus 148 i~~~~~~---------~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 218 (361)
T 2oiz_A 148 TAAAGCW---------SVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVS 218 (361)
T ss_dssp GGGTTEE---------EEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEB
T ss_pred ecCCCcc---------eeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEe
Confidence 2111000 0001222 2555666655555443333332 11 00000 0000000
Q ss_pred CCCCCCCCccccCCCCCcc-----------ccccccCceE---EEEccCC-cEEEEeC----------CCCEEEEEeCCC
Q 001380 813 GDPIFPDNLFKFGDRDGMG-----------SEVLLQHPLG---VYCAKNG-QIYVADS----------YNHKIKKLDPAS 867 (1089)
Q Consensus 813 ~~~~~~~~l~~~g~~dg~~-----------~~~~l~~P~g---va~~~~G-~lyVaD~----------~n~~I~~~d~~~ 867 (1089)
.+. .-..+++.. +... ....-..|.| ++++++| .+||+.. ..+.|.++|.++
T Consensus 219 ~~~--~v~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t 295 (361)
T 2oiz_A 219 YYG--NVYSADFSG-DEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT 295 (361)
T ss_dssp TTS--EEEEEECSS-SSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT
T ss_pred CCC--eEEEEEecC-CCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC
Confidence 000 000000000 0000 0000012444 8899885 7999865 245899999988
Q ss_pred CeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEEEECCCCEEEEEeCCCC
Q 001380 868 NRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 868 ~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~~n~~I~~~~~~~~ 923 (1089)
+++..-... . . |.+|+++++|+ ||+++. +.|.+++..+.
T Consensus 296 ~~~v~~i~~-------------~-~-p~~ia~spdg~~l~v~n~--~~v~v~D~~t~ 335 (361)
T 2oiz_A 296 KQRVARIPG-------------R-D-ALSMTIDQQRNLMLTLDG--GNVNVYDISQP 335 (361)
T ss_dssp TEEEEEEEC-------------T-T-CCEEEEETTTTEEEEECS--SCEEEEECSSS
T ss_pred CcEEEEEec-------------C-C-eeEEEECCCCCEEEEeCC--CeEEEEECCCC
Confidence 765433211 1 2 99999999986 888874 99999998775
|
| >2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.6e-12 Score=124.43 Aligned_cols=101 Identities=20% Similarity=0.377 Sum_probs=83.3
Q ss_pred CCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCC--CEEEEEEeCCCCCChhcHHHHHHHHHHcCCcc
Q 001380 440 LNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDM--PFTVVGVHSAKFDNEKDLEAIRNAVLRYGISH 517 (1089)
Q Consensus 440 ~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~--~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (1089)
+++..+.. ...++|++||+||++||++|+.+.|.|.++++++++. ++.++.|.+
T Consensus 22 l~~~~~~~-~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~----------------------- 77 (140)
T 2dj1_A 22 LNDGNFDN-FVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDA----------------------- 77 (140)
T ss_dssp CCTTTHHH-HHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECT-----------------------
T ss_pred cChHhHHH-HHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeC-----------------------
Confidence 34444433 2336899999999999999999999999999999764 488888843
Q ss_pred ceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 518 PVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 518 ~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
+.+.++++.|+|.++|+++++ ++|+ +.++.|..+.+.+.++|++++.
T Consensus 78 ----~~~~~~~~~~~v~~~Pt~~~~-~~G~-~~~~~g~~~~~~l~~~l~~~~~ 124 (140)
T 2dj1_A 78 ----TSASMLASKFDVSGYPTIKIL-KKGQ-AVDYDGSRTQEEIVAKVREVSQ 124 (140)
T ss_dssp ----TTCHHHHHHTTCCSSSEEEEE-ETTE-EEECCSCCCHHHHHHHHHHHHS
T ss_pred ----cccHHHHHHCCCCccCeEEEE-ECCc-EEEcCCCCCHHHHHHHHHHhcC
Confidence 345689999999999999999 8899 6788899999999999988774
|
| >1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=5.3e-12 Score=117.03 Aligned_cols=87 Identities=18% Similarity=0.315 Sum_probs=74.0
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
++|++||+||++||++|+.+.|.|.+++++++ ++.++.|++ |.+.++++.|
T Consensus 20 ~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~--~~~~~~vd~---------------------------~~~~~~~~~~ 70 (107)
T 1gh2_A 20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP--QAVFLEVDV---------------------------HQCQGTAATN 70 (107)
T ss_dssp TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT--TSEEEEEET---------------------------TTSHHHHHHT
T ss_pred CCCEEEEEEECCCChhhHHHHHHHHHHHHHCC--CcEEEEEEC---------------------------ccCHHHHHhc
Confidence 68999999999999999999999999999994 588888864 3456799999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
+|.++|+++++ ++|+++.++.|... +++.++|++.+
T Consensus 71 ~v~~~Pt~~~~-~~G~~~~~~~G~~~-~~l~~~l~~~l 106 (107)
T 1gh2_A 71 NISATPTFQFF-RNKVRIDQYQGADA-VGLEEKIKQHL 106 (107)
T ss_dssp TCCSSSEEEEE-ETTEEEEEEESSCH-HHHHHHHHHHH
T ss_pred CCCcccEEEEE-ECCeEEEEEeCCCH-HHHHHHHHHhc
Confidence 99999999999 89999999998654 44777776654
|
| >2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=5e-12 Score=120.25 Aligned_cols=87 Identities=24% Similarity=0.373 Sum_probs=77.1
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
++|++||+||++||++|+.+.|.|+++.++|++ +.++.|++ |.+.++++.|
T Consensus 33 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~vd~---------------------------~~~~~~~~~~ 83 (122)
T 2vlu_A 33 AKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN--AVFLKVDV---------------------------DELKPIAEQF 83 (122)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEET---------------------------TTCHHHHHHT
T ss_pred cCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC--cEEEEEEC---------------------------CCCHHHHHHc
Confidence 589999999999999999999999999999875 88888865 3456899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
+|.++|+++++ ++|+++.++.|.. .+.+.++|++++
T Consensus 84 ~v~~~Pt~~~~-~~G~~~~~~~G~~-~~~l~~~l~~~l 119 (122)
T 2vlu_A 84 SVEAMPTFLFM-KEGDVKDRVVGAI-KEELTAKVGLHA 119 (122)
T ss_dssp TCCSSSEEEEE-ETTEEEEEEESSC-HHHHHHHHHHHH
T ss_pred CCCcccEEEEE-eCCEEEEEEeCcC-HHHHHHHHHHHh
Confidence 99999998877 8999999999988 888888888765
|
| >3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.7e-12 Score=123.18 Aligned_cols=93 Identities=22% Similarity=0.240 Sum_probs=83.3
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+|++||+||++||++|+.+.|.|.+++++++++ +.++.|.+ |.+.++++.|
T Consensus 23 ~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~-v~~~~vd~---------------------------~~~~~l~~~~ 74 (140)
T 3hz4_A 23 SKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSS-AVFGRINI---------------------------ATNPWTAEKY 74 (140)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-SEEEEEET---------------------------TTCHHHHHHH
T ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCc-eEEEEEEC---------------------------CcCHhHHHHC
Confidence 4799999999999999999999999999999874 88888854 4566899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHHhc
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFYG 573 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~~~ 573 (1089)
+|.++|+++++ ++|+++.++.|..+.+.+.++|+++++...
T Consensus 75 ~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~~~~ 115 (140)
T 3hz4_A 75 GVQGTPTFKFF-CHGRPVWEQVGQIYPSILKNAVRDMLQHGE 115 (140)
T ss_dssp TCCEESEEEEE-ETTEEEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred CCCcCCEEEEE-eCCcEEEEEcCCCCHHHHHHHHHHHhcccc
Confidence 99999999888 899999999999999999999999887644
|
| >2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A | Back alignment and structure |
|---|
Probab=99.30 E-value=6e-12 Score=118.26 Aligned_cols=84 Identities=25% Similarity=0.486 Sum_probs=73.5
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
+||++||+||++||++|+.+.|.|+++++++++ +.++.|++ |.+.+++++|
T Consensus 29 ~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~--v~~~~vd~---------------------------~~~~~l~~~~ 79 (114)
T 2oe3_A 29 QNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD--VRFVKCDV---------------------------DESPDIAKEC 79 (114)
T ss_dssp HCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT--SEEEEEET---------------------------TTCHHHHHHT
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC--CEEEEEEC---------------------------CCCHHHHHHC
Confidence 589999999999999999999999999999875 88888854 3456799999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVE 566 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~ 566 (1089)
+|.++|+++++ ++|+++.++.|.. .+.+.++|+
T Consensus 80 ~v~~~Pt~~~~-~~G~~~~~~~G~~-~~~l~~~l~ 112 (114)
T 2oe3_A 80 EVTAMPTFVLG-KDGQLIGKIIGAN-PTALEKGIK 112 (114)
T ss_dssp TCCSBSEEEEE-ETTEEEEEEESSC-HHHHHHHHH
T ss_pred CCCcccEEEEE-eCCeEEEEEeCCC-HHHHHHHHH
Confidence 99999998887 8999999999987 777777664
|
| >1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=6.4e-12 Score=120.15 Aligned_cols=88 Identities=18% Similarity=0.305 Sum_probs=77.1
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
++|++||+||++||++|+.+.|.|.+++++++ ++.++.|++ |.+.++++.|
T Consensus 36 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~---------------------------d~~~~l~~~~ 86 (125)
T 1r26_A 36 EDILTVAWFTAVWCGPCKTIERPMEKIAYEFP--TVKFAKVDA---------------------------DNNSEIVSKC 86 (125)
T ss_dssp SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT--TSEEEEEET---------------------------TTCHHHHHHT
T ss_pred cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC--CCEEEEEEC---------------------------CCCHHHHHHc
Confidence 68999999999999999999999999999985 488888865 3456799999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
+|.++|+++++ ++|+++.++.| .+.+.+.++|+++++
T Consensus 87 ~v~~~Pt~~i~-~~G~~~~~~~G-~~~~~l~~~l~~~l~ 123 (125)
T 1r26_A 87 RVLQLPTFIIA-RSGKMLGHVIG-ANPGMLRQKLRDIIK 123 (125)
T ss_dssp TCCSSSEEEEE-ETTEEEEEEES-SCHHHHHHHHHHHHH
T ss_pred CCCcccEEEEE-eCCeEEEEEeC-CCHHHHHHHHHHHhc
Confidence 99999998877 89999999999 577888888887764
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.30 E-value=2.1e-10 Score=131.16 Aligned_cols=239 Identities=10% Similarity=0.105 Sum_probs=144.6
Q ss_pred CCCceEEEeecCCeEEEEeC---------CCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCE
Q 001380 601 KFPGKLAIDILNNRLFISDS---------NHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNL 670 (1089)
Q Consensus 601 ~~P~~vavd~~~g~L~vsd~---------~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~ 670 (1089)
..| ++++++++.+||+++. ..+.|.++|.. ++.+.++...... +. .-..|.+++++|+|++
T Consensus 51 ~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~-~~-------~g~~p~~i~~spdg~~ 121 (361)
T 2oiz_A 51 FNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR-VQ-------GLNYDGLFRQTTDGKF 121 (361)
T ss_dssp EEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB-CC-------BCCCGGGEEECTTSSE
T ss_pred CCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc-cc-------cCCCcceEEECCCCCE
Confidence 357 8999998889999984 24579999986 6777666543110 00 1147999999999999
Q ss_pred EEEEECC-CCEEEEEECCCCeEEEE-ecCCCCCCCCCCCCcccccccCCc----eeEEEecCCCEEEEEECCC-------
Q 001380 671 LYVADTE-NHALREIDFVNDTVRTL-AGNGTKGSDYQGGEKGTSQLLNSP----WDVCYKPINEKVYIAMAGQ------- 737 (1089)
Q Consensus 671 lyVaD~~-n~~I~~~d~~~g~v~~~-ag~g~~~~~~~~~~~~~~~~l~~P----~~la~~~~g~~lyvad~~~------- 737 (1089)
|||++.. .+.|.+||.+++.+... ...+... ..+..| .-++++++|..+|+.....
T Consensus 122 l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~-----------~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~ 190 (361)
T 2oiz_A 122 IVLQNASPATSIGIVDVAKGDYVEDVTAAAGCW-----------SVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQS 190 (361)
T ss_dssp EEEEEESSSEEEEEEETTTTEEEEEEGGGTTEE-----------EEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEE
T ss_pred EEEECCCCCCeEEEEECCCCcEEEEEecCCCcc-----------eeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeec
Confidence 9999875 68999999998766543 3222100 000011 2244444444444443222
Q ss_pred ------------------------------cEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCce---EEEcCCC
Q 001380 738 ------------------------------HQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSG---ISLSPDF 784 (1089)
Q Consensus 738 ------------------------------~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~g---lav~~~g 784 (1089)
+.|+.+|...+.+..+..-. ... ......-..|.| +++++++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~----~~~-~~~~~~~~~p~g~~~~a~~~dg 265 (361)
T 2oiz_A 191 RSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWS----LLN-DEDKAKNWVPGGYNLVGLHRAS 265 (361)
T ss_dssp ECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEE----SCC-HHHHHTTCEECCSSCEEEETTT
T ss_pred cccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceeccccc----ccC-ccccccccccCCeeEEEEecCC
Confidence 22333333222111110000 000 000000012444 9999999
Q ss_pred CEEEEEeC----------CCCeEEEEEcCCCCeE-EEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEE
Q 001380 785 MEIYVADS----------ESSSIRALNLKTGGSR-LLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYV 852 (1089)
Q Consensus 785 ~~lyvad~----------~~~~I~~~~~~~~~~~-~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyV 852 (1089)
+++||+.. .+++|..+|..++.+. .+..+ . |.+|+++++|+ +|+
T Consensus 266 ~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~-----------------------~-p~~ia~spdg~~l~v 321 (361)
T 2oiz_A 266 GRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR-----------------------D-ALSMTIDQQRNLMLT 321 (361)
T ss_dssp TEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT-----------------------T-CCEEEEETTTTEEEE
T ss_pred CeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC-----------------------C-eeEEEECCCCCEEEE
Confidence 99999965 2458999999876543 22110 2 99999999995 888
Q ss_pred EeCCCCEEEEEeCCCC--eEE-EEeccCCCCCCCCcccccccCCCceEEEccCCc
Q 001380 853 ADSYNHKIKKLDPASN--RVS-TLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN 904 (1089)
Q Consensus 853 aD~~n~~I~~~d~~~~--~v~-t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~ 904 (1089)
++. +.|.++|.+++ ++. ++...| ..|.+++++++|+
T Consensus 322 ~n~--~~v~v~D~~t~~l~~~~~i~~~G--------------~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 322 LDG--GNVNVYDISQPEPKLLRTIEGAA--------------EASLQVQFHPVGG 360 (361)
T ss_dssp ECS--SCEEEEECSSSSCEEEEEETTSC--------------SSEEEEEECCCSC
T ss_pred eCC--CeEEEEECCCCcceeeEEeccCC--------------CCcEEEEecCCCC
Confidence 874 89999999988 543 332333 3499999999884
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-09 Score=115.54 Aligned_cols=207 Identities=13% Similarity=0.090 Sum_probs=141.9
Q ss_pred CCCceEEEeecCCeEEEEeCC--CCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC
Q 001380 601 KFPGKLAIDILNNRLFISDSN--HNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE 677 (1089)
Q Consensus 601 ~~P~~vavd~~~g~L~vsd~~--~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~ 677 (1089)
.|-.|++++ +++||++... .++|.++|+. |+++..+..+.. ....|+++ .++.||++++.
T Consensus 21 ~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-------------~fgeGi~~--~~~~ly~ltw~ 83 (243)
T 3mbr_X 21 AFTEGLFYL--RGHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-------------YFGAGIVA--WRDRLIQLTWR 83 (243)
T ss_dssp CCEEEEEEE--TTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-------------CCEEEEEE--ETTEEEEEESS
T ss_pred cccccEEEE--CCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-------------cceeEEEE--eCCEEEEEEee
Confidence 566799998 4899999665 4699999996 888887765421 12355666 46789999999
Q ss_pred CCEEEEEECCCCeEE-EEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCC
Q 001380 678 NHALREIDFVNDTVR-TLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGD 756 (1089)
Q Consensus 678 n~~I~~~d~~~g~v~-~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~ 756 (1089)
++.+.++|.++..+. ++.- + ..+|+++.+ ++.||+++ ++++|+.+|+.+..+..-...
T Consensus 84 ~~~v~v~D~~tl~~~~ti~~-~-----------------~~Gwglt~d--g~~L~vSd-gs~~l~~iDp~t~~~~~~I~V 142 (243)
T 3mbr_X 84 NHEGFVYDLATLTPRARFRY-P-----------------GEGWALTSD--DSHLYMSD-GTAVIRKLDPDTLQQVGSIKV 142 (243)
T ss_dssp SSEEEEEETTTTEEEEEEEC-S-----------------SCCCEEEEC--SSCEEEEC-SSSEEEEECTTTCCEEEEEEC
T ss_pred CCEEEEEECCcCcEEEEEeC-C-----------------CCceEEeeC--CCEEEEEC-CCCeEEEEeCCCCeEEEEEEE
Confidence 999999999886644 4442 2 146888754 67999999 589999999998765433221
Q ss_pred CccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccc
Q 001380 757 GYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLL 836 (1089)
Q Consensus 757 g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l 836 (1089)
+. + ...+..++.|... +| +||+....++.|.++|+.+|.+.-...-.. +..-... ......
T Consensus 143 ~~----~-----g~~~~~lNeLe~~-~G-~lyanvw~s~~I~vIDp~tG~V~~~idl~~-----l~~~~~~---~~~~~~ 203 (243)
T 3mbr_X 143 TA----G-----GRPLDNLNELEWV-NG-ELLANVWLTSRIARIDPASGKVVAWIDLQA-----LVPDADA---LTDSTN 203 (243)
T ss_dssp EE----T-----TEECCCEEEEEEE-TT-EEEEEETTTTEEEEECTTTCBEEEEEECGG-----GSTTTTS---CCCTTS
T ss_pred cc----C-----CcccccceeeEEe-CC-EEEEEECCCCeEEEEECCCCCEEEEEECCc-----Ccccccc---ccCCcC
Confidence 11 0 1223456667765 45 999999999999999999998764332110 1100000 001124
Q ss_pred cCceEEEEccCC-cEEEEeCCCCEEEEEe
Q 001380 837 QHPLGVYCAKNG-QIYVADSYNHKIKKLD 864 (1089)
Q Consensus 837 ~~P~gva~~~~G-~lyVaD~~n~~I~~~d 864 (1089)
..|.|||+|+++ ++||+.-.=-+++.+.
T Consensus 204 ~vlNGIA~d~~~~~lfVTGK~wp~~~~v~ 232 (243)
T 3mbr_X 204 DVLNGIAFDAEHDRLFVTGKRWPMLYEIR 232 (243)
T ss_dssp SCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred CceEEEEEcCCCCEEEEECCCCCcEEEEE
Confidence 579999999865 7999987666776654
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.9e-10 Score=118.95 Aligned_cols=205 Identities=14% Similarity=0.105 Sum_probs=141.9
Q ss_pred CCCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCC
Q 001380 601 KFPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENH 679 (1089)
Q Consensus 601 ~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~ 679 (1089)
.|-.|+.++ +++||++....++|.++|+. |+++..+ .... ....|++++ |+.||++++.++
T Consensus 55 ~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~-------------~FgeGit~~--g~~Ly~ltw~~~ 116 (268)
T 3nok_A 55 AFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLGN-------------IFAEGLASD--GERLYQLTWTEG 116 (268)
T ss_dssp CCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTT-------------CCEEEEEEC--SSCEEEEESSSC
T ss_pred cccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCC-------------cceeEEEEe--CCEEEEEEccCC
Confidence 345688887 68999999999999999986 8877776 3311 123566664 666999999999
Q ss_pred EEEEEECCCCeEE-EEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCc
Q 001380 680 ALREIDFVNDTVR-TLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGY 758 (1089)
Q Consensus 680 ~I~~~d~~~g~v~-~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~ 758 (1089)
.+.++|.++.++. ++. .+ ..+|+++.+ ++.||+++ ++++|+.+|+++..+..-...+.
T Consensus 117 ~v~V~D~~Tl~~~~ti~-~~-----------------~eGwGLt~D--g~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~ 175 (268)
T 3nok_A 117 LLFTWSGMPPQRERTTR-YS-----------------GEGWGLCYW--NGKLVRSD-GGTMLTFHEPDGFALVGAVQVKL 175 (268)
T ss_dssp EEEEEETTTTEEEEEEE-CS-----------------SCCCCEEEE--TTEEEEEC-SSSEEEEECTTTCCEEEEEECEE
T ss_pred EEEEEECCcCcEEEEEe-CC-----------------CceeEEecC--CCEEEEEC-CCCEEEEEcCCCCeEEEEEEeCC
Confidence 9999999886654 443 21 146888865 67999999 69999999999876543321111
Q ss_pred cccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccC
Q 001380 759 ERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQH 838 (1089)
Q Consensus 759 ~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~ 838 (1089)
+ ...+..++.|.+. +| .||+....++.|.+||+.++.+.....-. ++...... ........
T Consensus 176 ----~-----g~~v~~lNeLe~~-dG-~lyanvw~s~~I~vIDp~TG~V~~~Idl~-----~L~~~~~~---~~~~~~~v 236 (268)
T 3nok_A 176 ----R-----GQPVELINELECA-NG-VIYANIWHSSDVLEIDPATGTVVGVIDAS-----ALTRAVAG---QVTNPEAV 236 (268)
T ss_dssp ----T-----TEECCCEEEEEEE-TT-EEEEEETTCSEEEEECTTTCBEEEEEECH-----HHHHHHTT---TCCCTTCC
T ss_pred ----C-----CcccccccccEEe-CC-EEEEEECCCCeEEEEeCCCCcEEEEEECC-----CCcccccc---cccCcCCc
Confidence 0 1234466788877 66 99999999999999999998875433210 01000000 00112347
Q ss_pred ceEEEEccCC-cEEEEeCCCCEEEEE
Q 001380 839 PLGVYCAKNG-QIYVADSYNHKIKKL 863 (1089)
Q Consensus 839 P~gva~~~~G-~lyVaD~~n~~I~~~ 863 (1089)
|.|||+++++ ++||+.-.=-+++.+
T Consensus 237 lNGIA~dp~~~rlfVTGK~Wp~~~ev 262 (268)
T 3nok_A 237 LNGIAVEPGSGRIFMTGKLWPRLFEV 262 (268)
T ss_dssp EEEEEECTTTCCEEEEETTCSEEEEE
T ss_pred eEEEEEcCCCCEEEEeCCCCCceEEE
Confidence 9999999865 799998665566655
|
| >1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C | Back alignment and structure |
|---|
Probab=99.29 E-value=5.3e-12 Score=116.29 Aligned_cols=88 Identities=24% Similarity=0.418 Sum_probs=77.6
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+|++||.||++||++|+.+.|.++++++++++. +.++.|+. |.+.++++.|
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~v~~---------------------------~~~~~~~~~~ 68 (105)
T 1fb6_A 17 SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK-IAVYKLNT---------------------------DEAPGIATQY 68 (105)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEET---------------------------TTCHHHHHHT
T ss_pred CCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCc-eEEEEEcC---------------------------cchHHHHHhC
Confidence 5789999999999999999999999999999864 88888864 3456899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
+|.++|+++++ ++|+++.++.|..+.+.+.++|+++
T Consensus 69 ~v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~l~~~ 104 (105)
T 1fb6_A 69 NIRSIPTVLFF-KNGERKESIIGAVPKSTLTDSIEKY 104 (105)
T ss_dssp TCCSSSEEEEE-ETTEEEEEEEECCCHHHHHHHHHHH
T ss_pred CCCcccEEEEE-eCCeEEEEEecCCCHHHHHHHHHhh
Confidence 99999998888 7999999999998888888888764
|
| >1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=6e-12 Score=120.06 Aligned_cols=89 Identities=26% Similarity=0.459 Sum_probs=74.1
Q ss_pred ccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 450 ~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
+.++|++||+||++||++|+.+.|.+++++++++ ++.++.|+++ +.+.++++
T Consensus 34 ~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~--~~~~~~vd~~--------------------------~~~~~~~~ 85 (124)
T 1faa_A 34 AAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL--DVIFLKLDCN--------------------------QENKTLAK 85 (124)
T ss_dssp HTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECS--------------------------STTHHHHH
T ss_pred hcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCC--CCEEEEEecC--------------------------cchHHHHH
Confidence 3478999999999999999999999999999987 4788888541 23568999
Q ss_pred HhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 530 ELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
.|+|.++|+++++ ++|+++.++.|.. .+++.++|+++
T Consensus 86 ~~~v~~~Pt~~~~-~~G~~~~~~~G~~-~~~l~~~i~~~ 122 (124)
T 1faa_A 86 ELGIRVVPTFKIL-KENSVVGEVTGAK-YDKLLEAIQAA 122 (124)
T ss_dssp HHCCSSSSEEEEE-ETTEEEEEEESSC-HHHHHHHHHHH
T ss_pred HcCCCeeeEEEEE-eCCcEEEEEcCCC-HHHHHHHHHHh
Confidence 9999999995555 8999999999875 77777777654
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.28 E-value=8.3e-10 Score=125.87 Aligned_cols=268 Identities=12% Similarity=0.065 Sum_probs=168.6
Q ss_pred cCCeEEEEeCCCCEEEEEeCCC-----CEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCC------C
Q 001380 611 LNNRLFISDSNHNRIVVTDLDG-----NFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTEN------H 679 (1089)
Q Consensus 611 ~~g~L~vsd~~~~~I~~~~~~g-----~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n------~ 679 (1089)
...+|||+..+.++|.++|... +.+.+|... +- ..+.-...|+++.+.|+| |||+..++ +
T Consensus 94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~-~~------~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g 164 (462)
T 2ece_A 94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPE-EV------KKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPG 164 (462)
T ss_dssp CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHH-HH------HHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCC
T ss_pred cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechh-hc------ccccCCCcccceeECCCe--EEEEcCCCcCCCCCC
Confidence 4788999999999999999752 345555210 00 000013479999999998 89987666 7
Q ss_pred EEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC------------------CcEEE
Q 001380 680 ALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG------------------QHQIW 741 (1089)
Q Consensus 680 ~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~------------------~~~I~ 741 (1089)
.|..+|.+++++..--..+... -..++++.++|+++.+|+++++ .++|.
T Consensus 165 ~v~vlD~~T~~v~~~~~~~~~~-------------~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~ 231 (462)
T 2ece_A 165 GILMLDHYSFEPLGKWEIDRGD-------------QYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIH 231 (462)
T ss_dssp EEEEECTTTCCEEEECCSBCTT-------------CCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEE
T ss_pred eEEEEECCCCeEEEEEccCCCC-------------ccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEE
Confidence 9999999876655443222110 1256789999999999999854 79999
Q ss_pred EEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEE--cCCCCEEEEEeC-----CCCeEEEEEcCCCCeEEEec--
Q 001380 742 EHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISL--SPDFMEIYVADS-----ESSSIRALNLKTGGSRLLAG-- 812 (1089)
Q Consensus 742 ~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav--~~~g~~lyvad~-----~~~~I~~~~~~~~~~~~~~g-- 812 (1089)
.||..++++..-...|. .-..|.+|.+ +|+|+.+||+.. .+++|.++..+++......-
T Consensus 232 v~D~~~~k~~~tI~vg~------------~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vId 299 (462)
T 2ece_A 232 FWDLRKRKRIHSLTLGE------------ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIE 299 (462)
T ss_dssp EEETTTTEEEEEEESCT------------TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEE
T ss_pred EEECCCCcEeeEEecCC------------CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEe
Confidence 99998875443221110 1124788877 999999999999 89999887776543321110
Q ss_pred --CCCCCC---CCccccCCCCCccccccccCceEEEEccCC-cEEEEeCCCCEEEEEeCC-CC--eE-EEEeccCCCC--
Q 001380 813 --GDPIFP---DNLFKFGDRDGMGSEVLLQHPLGVYCAKNG-QIYVADSYNHKIKKLDPA-SN--RV-STLAGIGKAG-- 880 (1089)
Q Consensus 813 --~~~~~~---~~l~~~g~~dg~~~~~~l~~P~gva~~~~G-~lyVaD~~n~~I~~~d~~-~~--~v-~t~~g~g~~g-- 880 (1089)
..+... .-.-.|+. .-..|.+|.+++|| .|||++.+.+.|.+||.. .+ ++ .++.-.|...
T Consensus 300 i~~~~v~~~lp~~~~~f~~--------~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~ 371 (462)
T 2ece_A 300 IPAEPLEGNLPEILKPFKA--------VPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRA 371 (462)
T ss_dssp ECCEECCSSCCGGGGGGTE--------ECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCB
T ss_pred CCCcccccccccccccccc--------CCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccc
Confidence 000000 00000110 01368999999999 599999999999999864 22 22 2222111100
Q ss_pred -CCCCcccccccCCCceEEEccCCc-EEEEE--------C-----CCCEEEEEeCCCC
Q 001380 881 -FKDGAALAAQLSEPAGIIEAQNGN-LFIAD--------T-----NNNIIRYLDLNKE 923 (1089)
Q Consensus 881 -~~~g~~~~~~l~~P~gi~vd~~G~-lyVad--------~-----~n~~I~~~~~~~~ 923 (1089)
...|. .--..|.+++++++|+ |||++ . ++..+.+++.+.+
T Consensus 372 ~~~~G~---~~~ggPr~~~lSpDGk~LyVaNsl~~~wd~Qfyp~~~~~~~~~~~vd~~ 426 (462)
T 2ece_A 372 DHPAGH---KLTGAPQMLEISRDGRRVYVTNSLYSTWDNQFYPEGLKGWMVKLNANPS 426 (462)
T ss_dssp CCTTSC---CCCSCCCCEEECTTSSEEEEECCCCHHHHHHHSTTCCCCEEEEEEECTT
T ss_pred cccccc---cCCCCCCEEEEcCCCCEEEEEcCCcccccccccCCCCceEEEEEEecCC
Confidence 00000 0113599999999995 99998 2 4556665555544
|
| >2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A | Back alignment and structure |
|---|
Probab=99.28 E-value=5.9e-12 Score=118.80 Aligned_cols=88 Identities=26% Similarity=0.471 Sum_probs=74.9
Q ss_pred cccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHH
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLW 528 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~ 528 (1089)
++.++|++||+||++||++|+.+.|.++++++++ ++.++.|++ |.+.+++
T Consensus 29 ~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~---~~~~~~vd~---------------------------~~~~~~~ 78 (117)
T 2xc2_A 29 EQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY---DAIFVKVDV---------------------------DKLEETA 78 (117)
T ss_dssp HHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS---SSEEEEEET---------------------------TTSHHHH
T ss_pred HhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc---CcEEEEEEC---------------------------CccHHHH
Confidence 3447899999999999999999999999999888 588888864 3456899
Q ss_pred HHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 529 RELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 529 ~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
+.|+|.++|+++++ ++|+++.++.| .+.+.+.++|+++
T Consensus 79 ~~~~v~~~Pt~~~~-~~G~~~~~~~G-~~~~~l~~~l~~~ 116 (117)
T 2xc2_A 79 RKYNISAMPTFIAI-KNGEKVGDVVG-ASIAKVEDMIKKF 116 (117)
T ss_dssp HHTTCCSSSEEEEE-ETTEEEEEEES-SCHHHHHHHHHHH
T ss_pred HHcCCCccceEEEE-eCCcEEEEEeC-CCHHHHHHHHHHh
Confidence 99999999998877 89999999999 5777777777654
|
| >2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A | Back alignment and structure |
|---|
Probab=99.28 E-value=4.9e-12 Score=118.00 Aligned_cols=89 Identities=19% Similarity=0.310 Sum_probs=75.7
Q ss_pred cCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHH
Q 001380 451 LKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRE 530 (1089)
Q Consensus 451 ~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~ 530 (1089)
.++|++||+||++||++|+.+.|.|.++.++++ ++.++.|++ |.+.++++.
T Consensus 17 ~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~--~v~~~~vd~---------------------------~~~~~l~~~ 67 (110)
T 2l6c_A 17 EGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP--QVAISSVDS---------------------------EARPELMKE 67 (110)
T ss_dssp TTCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT--TSCEEEEEG---------------------------GGCHHHHHH
T ss_pred HcCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC--CcEEEEEcC---------------------------cCCHHHHHH
Confidence 457999999999999999999999999998886 467777743 345679999
Q ss_pred hCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 531 LGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 531 ~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
|+|.++|+++++ ++|+++.++.|..+.+++.+.++...
T Consensus 68 ~~v~~~Pt~~~~-~~G~~v~~~~G~~~~~~l~~~~~~~~ 105 (110)
T 2l6c_A 68 LGFERVPTLVFI-RDGKVAKVFSGIMNPRELQALYASIH 105 (110)
T ss_dssp TTCCSSCEEEEE-ESSSEEEEEESCCCHHHHHHHHHTC-
T ss_pred cCCcccCEEEEE-ECCEEEEEEcCCCCHHHHHHHHHHHh
Confidence 999999999999 99999999999888888877776543
|
| >2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A | Back alignment and structure |
|---|
Probab=99.28 E-value=8.1e-12 Score=115.80 Aligned_cols=89 Identities=25% Similarity=0.454 Sum_probs=78.9
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+|++||.||++||++|+.+.|.|.++.+++++ ++.++.|++ |.+.++++.|
T Consensus 17 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~---------------------------~~~~~~~~~~ 68 (109)
T 2yzu_A 17 QHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEG-KLLVAKLDV---------------------------DENPKTAMRY 68 (109)
T ss_dssp HCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBT-TBEEEEEET---------------------------TTCHHHHHHT
T ss_pred CCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhC-ceEEEEEEC---------------------------CCCHhHHHhC
Confidence 579999999999999999999999999999986 489999965 3456799999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
+|.++|+++++ ++|+++.++.|..+.+.+.++|+.++
T Consensus 69 ~v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~l 105 (109)
T 2yzu_A 69 RVMSIPTVILF-KDGQPVEVLVGAQPKRNYQAKIEKHL 105 (109)
T ss_dssp TCCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHTTC
T ss_pred CCCcCCEEEEE-eCCcEeeeEeCCCCHHHHHHHHHHHh
Confidence 99999999999 89999999999988888888887654
|
| >3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-11 Score=115.00 Aligned_cols=89 Identities=20% Similarity=0.366 Sum_probs=77.9
Q ss_pred cCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCC--CEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHH
Q 001380 451 LKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDM--PFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLW 528 (1089)
Q Consensus 451 ~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~--~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~ 528 (1089)
+++|++||+||++||++|+.+.|.+.++.+++.+. ++.++.|.+ +.+.+++
T Consensus 19 ~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~---------------------------~~~~~l~ 71 (111)
T 3uvt_A 19 IAEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDC---------------------------TAERNIC 71 (111)
T ss_dssp HHSSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEET---------------------------TTCHHHH
T ss_pred hcCCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEec---------------------------cccHhHH
Confidence 34889999999999999999999999999988643 688888864 4556799
Q ss_pred HHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHH
Q 001380 529 RELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEA 567 (1089)
Q Consensus 529 ~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~ 567 (1089)
+.|+|.++|+++++ ++|+++.++.|..+.+.+.++|++
T Consensus 72 ~~~~v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l~~ 109 (111)
T 3uvt_A 72 SKYSVRGYPTLLLF-RGGKKVSEHSGGRDLDSLHRFVLS 109 (111)
T ss_dssp HHTTCCSSSEEEEE-ETTEEEEEECSCCSHHHHHHHHHH
T ss_pred HhcCCCcccEEEEE-eCCcEEEeccCCcCHHHHHHHHHh
Confidence 99999999999888 899999999999999988888765
|
| >2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.28 E-value=5.5e-12 Score=121.96 Aligned_cols=104 Identities=16% Similarity=0.266 Sum_probs=79.7
Q ss_pred CCCCceeeccccc-CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCC-CCEEEEEEeCCCCCChhcHHHHHHHHHHcCCc
Q 001380 439 WLNTAPLQFRRDL-KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD-MPFTVVGVHSAKFDNEKDLEAIRNAVLRYGIS 516 (1089)
Q Consensus 439 ~~~g~~~~l~~~~-~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~-~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~ 516 (1089)
.+++..+.. ... ++|++||+||++||++|+.+.|.|.++++++++ .++.++.|.+
T Consensus 11 ~l~~~~~~~-~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~---------------------- 67 (133)
T 2dj3_A 11 VVVGKTFDA-IVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDA---------------------- 67 (133)
T ss_dssp ECCTTTCCC-CCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECT----------------------
T ss_pred EEcCCCHHH-HhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecC----------------------
Confidence 345554443 222 489999999999999999999999999999985 3688988854
Q ss_pred cceeecCChhHHHHhCCCceeEEEEECCCCcEEE-Eec-CCCchhhHHHHHHHHHH
Q 001380 517 HPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLA-QLA-GEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 517 ~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~-~~~-G~~~~~~l~~~l~~~l~ 570 (1089)
+.+..+++.|+|.++|++++++.++++.. .+. |..+.+.+.++|+..+.
T Consensus 68 -----~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~gg~~~~~~l~~~l~~~~~ 118 (133)
T 2dj3_A 68 -----TANDITNDQYKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHAT 118 (133)
T ss_dssp -----TTSCCCCSSCCCSSSSEEEEECTTCTTSCEECCSSCCSTTHHHHHHHHHSS
T ss_pred -----CcCHHHHhhcCCCcCCEEEEEeCCCcccceEecCCCcCHHHHHHHHHHhcc
Confidence 22345667899999999999987776532 455 55788888888887664
|
| >1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-11 Score=115.49 Aligned_cols=89 Identities=28% Similarity=0.422 Sum_probs=78.3
Q ss_pred cCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHH
Q 001380 451 LKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRE 530 (1089)
Q Consensus 451 ~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~ 530 (1089)
.++|++||+||++||++|+.+.|.|+++.++++ ++.++.|++ |.+.++++.
T Consensus 24 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~---------------------------~~~~~~~~~ 74 (113)
T 1ti3_A 24 GSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP--NVTFLKVDV---------------------------DELKAVAEE 74 (113)
T ss_dssp TSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS--SEEEEEEET---------------------------TTCHHHHHH
T ss_pred hcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC--CcEEEEEEc---------------------------cccHHHHHh
Confidence 368999999999999999999999999999987 589999964 445688999
Q ss_pred hCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 531 LGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 531 ~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
|+|.++|+++++ ++|+++.++.| .+.+.+.++|++++.
T Consensus 75 ~~v~~~Pt~~~~-~~G~~~~~~~g-~~~~~l~~~l~~~~~ 112 (113)
T 1ti3_A 75 WNVEAMPTFIFL-KDGKLVDKTVG-ADKDGLPTLVAKHAT 112 (113)
T ss_dssp HHCSSTTEEEEE-ETTEEEEEEEC-CCTTHHHHHHHHHHH
T ss_pred CCCCcccEEEEE-eCCEEEEEEec-CCHHHHHHHHHHhhc
Confidence 999999999998 79999999988 578889888887764
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=6.2e-11 Score=134.80 Aligned_cols=244 Identities=10% Similarity=0.005 Sum_probs=151.8
Q ss_pred CCceEEEeecCCeEEEEeC---------CCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEE
Q 001380 602 FPGKLAIDILNNRLFISDS---------NHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLL 671 (1089)
Q Consensus 602 ~P~~vavd~~~g~L~vsd~---------~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~l 671 (1089)
.| +++++++++++||+++ ..+.|.++|+. ++.+.+|..++...+. ....|++++++|+|+++
T Consensus 67 ~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~-------~g~~P~~ia~SpDGk~l 138 (368)
T 1mda_H 67 LS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS-------VGPRVHIIGNCASSACL 138 (368)
T ss_dssp TC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC-------BSCCTTSEEECTTSSCE
T ss_pred CC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc-------cCCCcceEEEcCCCCEE
Confidence 48 8999998899999984 35789999987 7788777544211111 12479999999999999
Q ss_pred EEEECC-CCEEEE--EECCCCeEEEEecCCCC-----C---C--CCCCCC-------c-----cccc--------ccCCc
Q 001380 672 YVADTE-NHALRE--IDFVNDTVRTLAGNGTK-----G---S--DYQGGE-------K-----GTSQ--------LLNSP 718 (1089)
Q Consensus 672 yVaD~~-n~~I~~--~d~~~g~v~~~ag~g~~-----~---~--~~~~~~-------~-----~~~~--------~l~~P 718 (1089)
||++.. .+.|.+ +|+.+ +.++.-.+.. + + ...++. . +... .-..|
T Consensus 139 yVan~~~~~~v~V~~iD~~t--v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P 216 (368)
T 1mda_H 139 LFFLFGSSAAAGLSVPGASD--DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQA 216 (368)
T ss_dssp EEEECSSSCEEEEEETTTEE--EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCC
T ss_pred EEEccCCCCeEEEEEEchhh--ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCc
Confidence 999875 678888 88866 5555321100 0 0 000000 0 0000 00124
Q ss_pred eeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCce---EEEcCCCCEEEEEeC---
Q 001380 719 WDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSG---ISLSPDFMEIYVADS--- 792 (1089)
Q Consensus 719 ~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~g---lav~~~g~~lyvad~--- 792 (1089)
. + .++++.+|++.. +.|+.+|..++.......-. .........-..|.| ++++++|+++||+..
T Consensus 217 ~--~-~~~~~~~~~vs~--~~V~viD~~~~~~~v~~~~~-----~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~ 286 (368)
T 1mda_H 217 A--Q-ANYPGMLVWAVA--SSILQGDIPAAGATMKAAID-----GNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHS 286 (368)
T ss_dssp E--E-ETTTTEEEECBS--SCCEEEECCSSCCEEECCCC-----SSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECS
T ss_pred c--c-cccCCEEEEEcC--CEEEEEECCCCcceEEEEEE-----eccccccccccccCcceeeEEcCCCCEEEEEecccc
Confidence 3 3 555556666655 77878887654332222100 000000001123555 899999999999865
Q ss_pred C-----CCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEEEeC-CCCEEEEEeC
Q 001380 793 E-----SSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADS-YNHKIKKLDP 865 (1089)
Q Consensus 793 ~-----~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~-~n~~I~~~d~ 865 (1089)
+ .+.+.++|..+..+.... ..| ..|.||++++||+ +|++.. ..+.|.+||.
T Consensus 287 ~~~~~~~~~~~ViD~~t~~vv~~i-----------~vg-----------~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~ 344 (368)
T 1mda_H 287 RSCLAAAENTSSVTASVGQTSGPI-----------SNG-----------HDSDAIIAAQDGASDNYANSAGTEVLDIYDA 344 (368)
T ss_dssp SCTTSCEEEEEEEESSSCCEEECC-----------EEE-----------EEECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred CcccccCCCEEEEECCCCeEEEEE-----------ECC-----------CCcceEEECCCCCEEEEEccCCCCeEEEEEC
Confidence 3 345669999876553211 001 2599999999995 999998 6999999999
Q ss_pred CCCeEEEEeccCCCCCCCCcccccccCCCceEEEcc
Q 001380 866 ASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQ 901 (1089)
Q Consensus 866 ~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~ 901 (1089)
+++++..-...| ..|.||++..
T Consensus 345 ~t~kvv~~I~vg--------------~~P~~i~~~~ 366 (368)
T 1mda_H 345 ASDQDQSSVELD--------------KGPESLSVQN 366 (368)
T ss_dssp SSCEEEEECCCC--------------SCCCEEECCC
T ss_pred CCCcEEEEEECC--------------CCCCEEEeec
Confidence 988776544332 4499998864
|
| >2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.27 E-value=3e-12 Score=121.77 Aligned_cols=89 Identities=25% Similarity=0.439 Sum_probs=77.8
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
++|++||+||++||++|+.+.|.|+++++++++.++.++.|++ |.+.++++.|
T Consensus 32 ~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~---------------------------d~~~~~~~~~ 84 (121)
T 2j23_A 32 GDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDV---------------------------DEQSQIAQEV 84 (121)
T ss_dssp SSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEET---------------------------TTCHHHHHHH
T ss_pred CCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEEC---------------------------cCCHHHHHHc
Confidence 6799999999999999999999999999988765688898865 3456899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
+|.++|+++++ ++|+++.++.|. +.+.+.++|++++
T Consensus 85 ~v~~~Pt~~~~-~~G~~~~~~~G~-~~~~l~~~l~~~l 120 (121)
T 2j23_A 85 GIRAMPTFVFF-KNGQKIDTVVGA-DPSKLQAAITQHS 120 (121)
T ss_dssp TCCSSSEEEEE-ETTEEEEEEESS-CHHHHHHHHHHHT
T ss_pred CCCcccEEEEE-ECCeEEeeEcCC-CHHHHHHHHHHhh
Confidence 99999999988 699999999998 8888888887654
|
| >1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-11 Score=113.88 Aligned_cols=89 Identities=33% Similarity=0.559 Sum_probs=75.8
Q ss_pred ccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 450 ~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
+.++|++||.||++||++|+.+.|.++++.++++. ++.++.|++ |.+.++++
T Consensus 17 ~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~---------------------------~~~~~~~~ 68 (106)
T 1xwb_A 17 KASGKLVVLDFFATWCGPCKMISPKLVELSTQFAD-NVVVLKVDV---------------------------DECEDIAM 68 (106)
T ss_dssp HHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEET---------------------------TTCHHHHH
T ss_pred hcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCC-CeEEEEEec---------------------------cchHHHHH
Confidence 34789999999999999999999999999999874 599999965 34567999
Q ss_pred HhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 530 ELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
.|+|.++|+++++ ++|+++.++.| .+.+.+.++|+++
T Consensus 69 ~~~v~~~Pt~~~~-~~G~~~~~~~g-~~~~~l~~~i~~~ 105 (106)
T 1xwb_A 69 EYNISSMPTFVFL-KNGVKVEEFAG-ANAKRLEDVIKAN 105 (106)
T ss_dssp HTTCCSSSEEEEE-ETTEEEEEEES-CCHHHHHHHHHHT
T ss_pred HcCCCcccEEEEE-cCCcEEEEEcC-CCHHHHHHHHHHh
Confidence 9999999998777 79999999999 5777777777653
|
| >1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=8.2e-12 Score=116.82 Aligned_cols=86 Identities=27% Similarity=0.456 Sum_probs=74.8
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
++|++||+||++||++|+.+.|.|.++.++++ ++.++.|++ |.+.++++.|
T Consensus 25 ~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~--~v~~~~vd~---------------------------~~~~~~~~~~ 75 (112)
T 1syr_A 25 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYT--KMVFIKVDV---------------------------DEVSEVTEKE 75 (112)
T ss_dssp HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEET---------------------------TTTHHHHHHT
T ss_pred cCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC--CCEEEEEEC---------------------------CCCHHHHHHc
Confidence 68999999999999999999999999999987 488888864 3445799999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
+|.++|+++++ ++|+++.++.|. +.+.+.++|+++
T Consensus 76 ~v~~~Pt~~~~-~~G~~~~~~~G~-~~~~l~~~l~~~ 110 (112)
T 1syr_A 76 NITSMPTFKVY-KNGSSVDTLLGA-NDSALKQLIEKY 110 (112)
T ss_dssp TCCSSSEEEEE-ETTEEEEEEESC-CHHHHHHHHHTT
T ss_pred CCCcccEEEEE-ECCcEEEEEeCC-CHHHHHHHHHHh
Confidence 99999997777 799999999998 888888887654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.27 E-value=8.9e-10 Score=117.06 Aligned_cols=205 Identities=13% Similarity=0.105 Sum_probs=140.5
Q ss_pred CCCceEEEeecCCeEEEEeCC--CCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC
Q 001380 601 KFPGKLAIDILNNRLFISDSN--HNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE 677 (1089)
Q Consensus 601 ~~P~~vavd~~~g~L~vsd~~--~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~ 677 (1089)
.|-.|+.++ ++.||++... ..+|.++|+. |+++..+..... ....||++ .|+.||++++.
T Consensus 43 ~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~-------------~FgeGit~--~g~~ly~ltw~ 105 (262)
T 3nol_A 43 AFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR-------------YFGEGISD--WKDKIVGLTWK 105 (262)
T ss_dssp CEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-------------CCEEEEEE--ETTEEEEEESS
T ss_pred cccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-------------cceeEEEE--eCCEEEEEEee
Confidence 345789998 6899999855 4589999997 888887755411 12355666 47789999999
Q ss_pred CCEEEEEECCCCe-EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCC
Q 001380 678 NHALREIDFVNDT-VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGD 756 (1089)
Q Consensus 678 n~~I~~~d~~~g~-v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~ 756 (1089)
++.+.++|+++.. +.++.- + ..+|+++.+ ++.||+++ ++++|+.+|+.+..+..-...
T Consensus 106 ~~~v~v~D~~t~~~~~ti~~-~-----------------~eG~glt~d--g~~L~~Sd-Gs~~i~~iDp~T~~v~~~I~V 164 (262)
T 3nol_A 106 NGLGFVWNIRNLRQVRSFNY-D-----------------GEGWGLTHN--DQYLIMSD-GTPVLRFLDPESLTPVRTITV 164 (262)
T ss_dssp SSEEEEEETTTCCEEEEEEC-S-----------------SCCCCEEEC--SSCEEECC-SSSEEEEECTTTCSEEEEEEC
T ss_pred CCEEEEEECccCcEEEEEEC-C-----------------CCceEEecC--CCEEEEEC-CCCeEEEEcCCCCeEEEEEEe
Confidence 9999999998755 445542 1 145777754 67999998 589999999998655433211
Q ss_pred CccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccc
Q 001380 757 GYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLL 836 (1089)
Q Consensus 757 g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l 836 (1089)
+. + ...+..++.|.+. +| .||+....++.|.++|+.+|.+.....-. ++...... .....
T Consensus 165 ~~----~-----g~~~~~lNELe~~-~G-~lyan~w~~~~I~vIDp~tG~V~~~Id~~-----~L~~~~~~----~~~~~ 224 (262)
T 3nol_A 165 TA----H-----GEELPELNELEWV-DG-EIFANVWQTNKIVRIDPETGKVTGIIDLN-----GILAEAGP----LPSPI 224 (262)
T ss_dssp EE----T-----TEECCCEEEEEEE-TT-EEEEEETTSSEEEEECTTTCBEEEEEECT-----TGGGGSCS----CCSSC
T ss_pred cc----C-----CccccccceeEEE-CC-EEEEEEccCCeEEEEECCCCcEEEEEECC-----cCcccccc----ccCcC
Confidence 10 0 0234456678776 56 99999999999999999999876443211 11110000 01124
Q ss_pred cCceEEEEccCC-cEEEEeCCCCEEEEE
Q 001380 837 QHPLGVYCAKNG-QIYVADSYNHKIKKL 863 (1089)
Q Consensus 837 ~~P~gva~~~~G-~lyVaD~~n~~I~~~ 863 (1089)
..|.|||+|+++ .+||+.-.=-+++.+
T Consensus 225 ~vlNGIA~dp~~~~lfVTGK~Wp~~~ev 252 (262)
T 3nol_A 225 DVLNGIAWDKEHHRLFVTGKLWPKVFEI 252 (262)
T ss_dssp CCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred CceEEEEEcCCCCEEEEECCCCCceEEE
Confidence 579999999875 799998665666655
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-10 Score=130.34 Aligned_cols=205 Identities=13% Similarity=0.153 Sum_probs=137.9
Q ss_pred CcceeEEeeCCCEEEEEE------------CCCCEEEEEECC--CCeEEEEecCCCCCCCCCCCCcccccccCCceeEEE
Q 001380 658 RPQGLAYNAKKNLLYVAD------------TENHALREIDFV--NDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCY 723 (1089)
Q Consensus 658 ~P~gla~d~~g~~lyVaD------------~~n~~I~~~d~~--~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~ 723 (1089)
.|..|+++++|. +|++. ...++|.++|++ ++..+.+.-.|.+.. ..-..|+||.+
T Consensus 51 G~EDi~~~~~G~-~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~----------~~~f~PhGi~~ 119 (355)
T 3sre_A 51 GSEDLEILPNGL-AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLD----------ISSFNPHGIST 119 (355)
T ss_dssp CCCEEEECTTSE-EEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCC----------GGGCCEEEEEE
T ss_pred CcceeEEcCCCe-EEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCC----------cCceeeeeeEE
Confidence 467777777654 67774 246788888887 455666654332000 01238999999
Q ss_pred ecC--C-CEEEEEECCC--c--EEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeC----
Q 001380 724 KPI--N-EKVYIAMAGQ--H--QIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADS---- 792 (1089)
Q Consensus 724 ~~~--g-~~lyvad~~~--~--~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~---- 792 (1089)
.++ + .+|||++.+. + .|++++..++....+..- . ...+..|++++++++| .+|+++.
T Consensus 120 ~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~------~-----g~~~~~pND~~v~~~G-~fyvt~~~~ft 187 (355)
T 3sre_A 120 FIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTI------R-----HKLLPSVNDIVAVGPE-HFYATNDHYFI 187 (355)
T ss_dssp EECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEE------C-----CTTCSSEEEEEEEETT-EEEEEESCSCS
T ss_pred EECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecc------c-----cCCCCCCceEEEeCCC-CEEecCCcEeC
Confidence 763 3 3799998773 3 477788776655444311 0 1347789999999998 9999875
Q ss_pred -------------CCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCC-cEEEEeCCCC
Q 001380 793 -------------ESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNG-QIYVADSYNH 858 (1089)
Q Consensus 793 -------------~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G-~lyVaD~~n~ 858 (1089)
..++|+++++. .++.+..+ +..|.||++++|| .+||+|+..+
T Consensus 188 d~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~----------------------l~~pNGia~spDg~~lYvadt~~~ 243 (355)
T 3sre_A 188 DPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEG----------------------FDFANGINISPDGKYVYIAELLAH 243 (355)
T ss_dssp SHHHHHHHHHTTCCCEEEEEECTT--CCEEEEEE----------------------ESSEEEEEECTTSSEEEEEEGGGT
T ss_pred CcccccchhhccCCccEEEEEECC--eEEEeecC----------------------CcccCcceECCCCCEEEEEeCCCC
Confidence 24678888763 44444332 6789999999998 6999999999
Q ss_pred EEEEEeCC-CCeEEEEeccCCCCCCCCcccccccCCCceEEEcc-CCcEEEEE-CCCCEEEEEeCC
Q 001380 859 KIKKLDPA-SNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQ-NGNLFIAD-TNNNIIRYLDLN 921 (1089)
Q Consensus 859 ~I~~~d~~-~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~-~G~lyVad-~~n~~I~~~~~~ 921 (1089)
+|.+|+.+ ++.+....-.. .-..|.|+++|. +|+|||+. .+..+|.++++.
T Consensus 244 ~I~~~~~~~~g~l~~~~~~~------------~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 244 KIHVYEKHANWTLTPLRVLS------------FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEEEEEECTTSCEEEEEEEE------------CSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred eEEEEEECCCCcEecCEEEe------------CCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 99999864 34443211000 013599999999 59999966 455677777665
|
| >3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-11 Score=118.62 Aligned_cols=89 Identities=12% Similarity=0.135 Sum_probs=75.5
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcC----CCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYK----DMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNL 527 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~----~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l 527 (1089)
.+|++||+|||+||++|+.+.|.+.++++++. ..++.++.|.+ |.+.++
T Consensus 32 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~---------------------------~~~~~l 84 (127)
T 3h79_A 32 PEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDG---------------------------EKYPDV 84 (127)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEET---------------------------TTCHHH
T ss_pred CCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEc---------------------------cccHhH
Confidence 48999999999999999999999999998764 23588888864 456789
Q ss_pred HHHhCCCceeEEEEECCCCcEE-EEecCCCchhhHHHHHHH
Q 001380 528 WRELGVNSWPTFAVVGPNGKLL-AQLAGEGHRKDLDDLVEA 567 (1089)
Q Consensus 528 ~~~~~v~~~Pt~~lid~~G~i~-~~~~G~~~~~~l~~~l~~ 567 (1089)
++.|+|.++|+++++++.+++. ..+.|..+.+.+.++|++
T Consensus 85 ~~~~~v~~~Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~i~~ 125 (127)
T 3h79_A 85 IERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQ 125 (127)
T ss_dssp HHHTTCCSSSEEEEECSSCSSSCEECCSCCCHHHHHHHHHH
T ss_pred HHhcCCccCCEEEEEeCCCCCCceEecCCccHHHHHHHHHh
Confidence 9999999999999997777653 568898899999888865
|
| >2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-11 Score=113.52 Aligned_cols=88 Identities=24% Similarity=0.494 Sum_probs=75.4
Q ss_pred ccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 450 ~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
+.++|++||+||++||++|+.+.|.|.++.++++ ++.++.|++ |.+.++++
T Consensus 16 ~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~---------------------------~~~~~~~~ 66 (104)
T 2vim_A 16 ENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP--EVEFAKVDV---------------------------DQNEEAAA 66 (104)
T ss_dssp TTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEET---------------------------TTCHHHHH
T ss_pred hcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC--CCEEEEEec---------------------------cCCHHHHH
Confidence 3468999999999999999999999999999986 588888865 34567899
Q ss_pred HhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 530 ELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
.|+|.++|+++++ ++|+++.++.| .+.+.+.++|+++
T Consensus 67 ~~~v~~~Pt~~~~-~~g~~~~~~~G-~~~~~l~~~l~~~ 103 (104)
T 2vim_A 67 KYSVTAMPTFVFI-KDGKEVDRFSG-ANETKLRETITRH 103 (104)
T ss_dssp HTTCCSSSEEEEE-ETTEEEEEEES-SCHHHHHHHHHHH
T ss_pred HcCCccccEEEEE-eCCcEEEEEeC-CCHHHHHHHHHhh
Confidence 9999999998888 59999999999 5777788777654
|
| >2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1e-11 Score=123.37 Aligned_cols=88 Identities=20% Similarity=0.365 Sum_probs=75.9
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
++|++||+||++||++|+.+.|.|.+++++++ ++.++.|.+ |.+.++++.|
T Consensus 31 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~---------------------------~~~~~l~~~~ 81 (153)
T 2wz9_A 31 AKSLLVVHFWAPWAPQCAQMNEVMAELAKELP--QVSFVKLEA---------------------------EGVPEVSEKY 81 (153)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEET---------------------------TTSHHHHHHT
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC--CeEEEEEEC---------------------------CCCHHHHHHc
Confidence 58999999999999999999999999999984 588888865 3456899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
+|.++|++++++ +|+++.++.|. ..+.+.++|++++.
T Consensus 82 ~v~~~Pt~~~~~-~G~~~~~~~G~-~~~~l~~~i~~~l~ 118 (153)
T 2wz9_A 82 EISSVPTFLFFK-NSQKIDRLDGA-HAPELTKKVQRHAS 118 (153)
T ss_dssp TCCSSSEEEEEE-TTEEEEEEESS-CHHHHHHHHHHHSC
T ss_pred CCCCCCEEEEEE-CCEEEEEEeCC-CHHHHHHHHHHHhc
Confidence 999999999998 99999998885 56677777776654
|
| >3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.2e-12 Score=120.72 Aligned_cols=93 Identities=17% Similarity=0.271 Sum_probs=78.2
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+|++||+||++||++|+.+.|.|.++++++++ ++.++.|++ +.+.++++.|
T Consensus 20 ~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~---------------------------~~~~~~~~~~ 71 (122)
T 3aps_A 20 GKTHWVVDFYAPWCGPCQNFAPEFELLARMIKG-KVRAGKVDC---------------------------QAYPQTCQKA 71 (122)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEET---------------------------TTCHHHHHHT
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeC---------------------------cCCHHHHHHc
Confidence 578999999999999999999999999999986 489999965 3455789999
Q ss_pred CCCceeEEEEECCCCcEEEEecCC----CchhhHHHHHHHHHHHhc
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGE----GHRKDLDDLVEAALLFYG 573 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~----~~~~~l~~~l~~~l~~~~ 573 (1089)
+|.++|++++++++|+ +.++.|. .+.+.+.++|+.+++...
T Consensus 72 ~v~~~Pt~~~~~~~~~-~~~~~g~~~~~~~~~~l~~~l~~~l~~~~ 116 (122)
T 3aps_A 72 GIKAYPSVKLYQYERA-KKSIWEEQINSRDAKTIAALIYGKLETLQ 116 (122)
T ss_dssp TCCSSSEEEEEEEEGG-GTEEEEEEECCSCHHHHHHHHHHHHHCC-
T ss_pred CCCccceEEEEeCCCc-cceeeccccCcCCHHHHHHHHHHHHHhhh
Confidence 9999999999987777 4455554 788999999999887544
|
| >3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.4e-11 Score=120.96 Aligned_cols=102 Identities=14% Similarity=0.076 Sum_probs=79.8
Q ss_pred HHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhH
Q 001380 173 LINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGV 252 (1089)
Q Consensus 173 lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di 252 (1089)
.|+.|+++|++++|+||. ..++..++++.+. ++ ++.+ .++++..++.+++++|+++++++||||+.+|+
T Consensus 44 ~L~~Lk~~Gi~~~I~Tg~--~~~~~~l~~l~lg---i~-~~~g-----~~~K~~~l~~~~~~~gi~~~~~~~vGD~~nDi 112 (168)
T 3ewi_A 44 GISLLKKSGIEVRLISER--ACSKQTLSALKLD---CK-TEVS-----VSDKLATVDEWRKEMGLCWKEVAYLGNEVSDE 112 (168)
T ss_dssp HHHHHHHTTCEEEEECSS--CCCHHHHHTTCCC---CC-EECS-----CSCHHHHHHHHHHHTTCCGGGEEEECCSGGGH
T ss_pred HHHHHHHCCCEEEEEeCc--HHHHHHHHHhCCC---cE-EEEC-----CCChHHHHHHHHHHcCcChHHEEEEeCCHhHH
Confidence 578899999999999998 6788889954443 22 2222 37889999999999999999999999999999
Q ss_pred HHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccC
Q 001380 253 QAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 253 ~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el 289 (1089)
.+++.+|+.++ + +...+.+++ .++++..+-.+-
T Consensus 113 ~~~~~ag~~~a-~--~na~~~~k~-~Ad~v~~~~~~~ 145 (168)
T 3ewi_A 113 ECLKRVGLSAV-P--ADACSGAQK-AVGYICKCSGGR 145 (168)
T ss_dssp HHHHHSSEEEE-C--TTCCHHHHT-TCSEECSSCTTT
T ss_pred HHHHHCCCEEE-e--CChhHHHHH-hCCEEeCCCCCc
Confidence 99999997643 3 323344444 689998876554
|
| >1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.3e-11 Score=118.84 Aligned_cols=101 Identities=25% Similarity=0.334 Sum_probs=78.9
Q ss_pred CCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccce
Q 001380 440 LNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPV 519 (1089)
Q Consensus 440 ~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v 519 (1089)
+++..+.. ...+++.+||+||++||++|+.+.|.|.+++++|++ ++.++.|++
T Consensus 38 l~~~~~~~-~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~-~v~~~~vd~------------------------- 90 (140)
T 1v98_A 38 ADEKGFAQ-EVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAG-RLKVVKVNV------------------------- 90 (140)
T ss_dssp ------------CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEET-------------------------
T ss_pred CCHHHHHH-HHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHHccC-ceEEEEEEC-------------------------
Confidence 34444433 222344499999999999999999999999999986 499999965
Q ss_pred eecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 520 VNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 520 ~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
|.+.++++.|+|.++|+++++ ++|+++.++.|..+.+.+.++|+.+++
T Consensus 91 --~~~~~l~~~~~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~i~~~l~ 138 (140)
T 1v98_A 91 --DEHPGLAARYGVRSVPTLVLF-RRGAPVATWVGASPRRVLEERLRPYLE 138 (140)
T ss_dssp --TTCHHHHHHTTCCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred --CCCHHHHHHCCCCccCEEEEE-eCCcEEEEEeCCCCHHHHHHHHHHHHc
Confidence 345679999999999999999 899999999999889999999988764
|
| >1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=7.1e-12 Score=119.99 Aligned_cols=89 Identities=19% Similarity=0.379 Sum_probs=76.3
Q ss_pred cCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHH
Q 001380 451 LKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRE 530 (1089)
Q Consensus 451 ~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~ 530 (1089)
+++ .+||+||++||++|+.+.|.|.++++++++.++.++.|.+ |.+.++++.
T Consensus 21 ~~~-~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~---------------------------~~~~~~~~~ 72 (126)
T 1x5e_A 21 LEG-DWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDV---------------------------TEQPGLSGR 72 (126)
T ss_dssp TSS-EEEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEET---------------------------TTCHHHHHH
T ss_pred hCC-CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEEC---------------------------cCCHHHHHH
Confidence 344 4899999999999999999999999999865689999965 345679999
Q ss_pred hCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 531 LGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 531 ~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
|+|.++|+++++ ++|++ .++.|..+.+.+.++|+..+
T Consensus 73 ~~v~~~Pt~~~~-~~G~~-~~~~G~~~~~~l~~~l~~~~ 109 (126)
T 1x5e_A 73 FIINALPTIYHC-KDGEF-RRYQGPRTKKDFINFISDKE 109 (126)
T ss_dssp TTCCSSSEEEEE-ETTEE-EECCSCCCHHHHHHHHHTCG
T ss_pred cCCcccCEEEEE-eCCeE-EEeecCCCHHHHHHHHHHHh
Confidence 999999999999 89995 68889888888888887654
|
| >2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.6e-11 Score=115.85 Aligned_cols=89 Identities=24% Similarity=0.415 Sum_probs=77.1
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
++|++||+||++||++|+.+.|.|+++.++|+ ++.++.|++ |.+.++++.|
T Consensus 27 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~---------------------------~~~~~~~~~~ 77 (118)
T 2vm1_A 27 TGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP--GAIFLKVDV---------------------------DELKDVAEAY 77 (118)
T ss_dssp HTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEET---------------------------TTSHHHHHHT
T ss_pred CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--CcEEEEEEc---------------------------ccCHHHHHHc
Confidence 48999999999999999999999999999987 588888854 4456889999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLF 571 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~ 571 (1089)
+|.++|+++++ ++|+++.++.| .+.+.+.++|+++++.
T Consensus 78 ~v~~~Pt~~~~-~~g~~~~~~~g-~~~~~l~~~l~~~~~~ 115 (118)
T 2vm1_A 78 NVEAMPTFLFI-KDGEKVDSVVG-GRKDDIHTKIVALMGS 115 (118)
T ss_dssp TCCSBSEEEEE-ETTEEEEEEES-CCHHHHHHHHHHHHC-
T ss_pred CCCcCcEEEEE-eCCeEEEEecC-CCHHHHHHHHHHHhcc
Confidence 99999999888 89999999888 4778888888877653
|
| >1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10 | Back alignment and structure |
|---|
Probab=99.25 E-value=4.3e-12 Score=135.54 Aligned_cols=200 Identities=14% Similarity=0.119 Sum_probs=121.8
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHc---CCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEM---GVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIY 154 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (1089)
|+|+|+||+||||+++...+.....++++++ |+.+.. ..|+........ ....+...............
T Consensus 2 m~kli~~DlDGTLl~~~~~i~~~~~~al~~l~~~G~~v~i-----~TGR~~~~~~~~-~~~l~~~~~~i~~nGa~i~~-- 73 (231)
T 1wr8_A 2 KIKAISIDIDGTITYPNRMIHEKALEAIRRAESLGIPIML-----VTGNTVQFAEAA-SILIGTSGPVVAEDGGAISY-- 73 (231)
T ss_dssp CCCEEEEESTTTTBCTTSCBCHHHHHHHHHHHHTTCCEEE-----ECSSCHHHHHHH-HHHHTCCSCEEEGGGTEEEE--
T ss_pred ceeEEEEECCCCCCCCCCcCCHHHHHHHHHHHHCCCEEEE-----EcCCChhHHHHH-HHHcCCCCeEEEeCCcEEEe--
Confidence 4799999999999998765555555555443 554211 223333322221 12222211000000000000
Q ss_pred HHHhcCCCCCCCCccHHHHHHHHH-hC-CCeE-----------EEEc-CCChHhHHHHHHHCCCCCCCccEEEEc----C
Q 001380 155 LDKYAKPNSGIGFPGALELINQCK-SK-GLKV-----------AVAS-SADRIKVDANLAAAGLPVSMFDAIVSA----D 216 (1089)
Q Consensus 155 ~~~~~~~~~~~~~pG~~~lL~~Lk-~~-Gi~v-----------aIvS-n~~~~~~~~~l~~~gl~~~~fd~i~~~----~ 216 (1089)
....... ..+ +.+.++++.++ +. |+.+ ++++ +...+.++.++++++ ..|+.+ ++ +
T Consensus 74 ~~~~~~~--~~l-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~e 146 (231)
T 1wr8_A 74 KKKRIFL--ASM-DEEWILWNEIRKRFPNARTSYTMPDRRAGLVIMRETINVETVREIINELN---LNLVAV-DSGFAIH 146 (231)
T ss_dssp TTEEEES--CCC-SHHHHHHHHHHHHCTTCCBCTTGGGCSSCEEECTTTSCHHHHHHHHHHTT---CSCEEE-ECSSCEE
T ss_pred CCEEEEe--ccH-HHHHHHHHHHHHhCCCceEEecCCCceeeEEEECCCCCHHHHHHHHHhcC---CcEEEE-ecCcEEE
Confidence 0000001 122 67777777777 54 5543 6666 556777888888864 346666 44 2
Q ss_pred CccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHh
Q 001380 217 AFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILT 296 (1089)
Q Consensus 217 ~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~ 296 (1089)
....++|++..++.+++++|++++++++|||+.+|+.+++.+|+. +.+.. ..+++++ .|++++.+..+-.+.++|.
T Consensus 147 i~~~~~~K~~~~~~~~~~~~~~~~~~~~iGD~~nD~~~~~~ag~~-v~~~~--~~~~~~~-~a~~v~~~~~e~Gv~~~l~ 222 (231)
T 1wr8_A 147 VKKPWINKGSGIEKASEFLGIKPKEVAHVGDGENDLDAFKVVGYK-VAVAQ--APKILKE-NADYVTKKEYGEGGAEAIY 222 (231)
T ss_dssp EECTTCCHHHHHHHHHHHHTSCGGGEEEEECSGGGHHHHHHSSEE-EECTT--SCHHHHT-TCSEECSSCHHHHHHHHHH
T ss_pred EecCCCChHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHcCCe-EEecC--CCHHHHh-hCCEEecCCCcchHHHHHH
Confidence 245689999999999999999999999999999999999999976 44433 3455544 7999999887754455554
|
| >4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A | Back alignment and structure |
|---|
Probab=99.25 E-value=3.7e-12 Score=140.17 Aligned_cols=87 Identities=13% Similarity=0.088 Sum_probs=70.6
Q ss_pred CccEEEEc----CCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEe
Q 001380 208 MFDAIVSA----DAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIR 283 (1089)
Q Consensus 208 ~fd~i~~~----~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi 283 (1089)
.+..+.+. +....+++|+..++.+++++|++++++++|||+.||+.|++.+| ++|.+|...+++++ .|++|+
T Consensus 178 ~~~~~~s~~~~~ei~~~~~~K~~~l~~l~~~lgi~~~~~i~~GD~~NDi~m~~~ag---~~vam~na~~~~k~-~A~~v~ 253 (279)
T 4dw8_A 178 KINVFRSEPYFLELVPQGIDKALSLSVLLENIGMTREEVIAIGDGYNDLSMIKFAG---MGVAMGNAQEPVKK-AADYIT 253 (279)
T ss_dssp TCEEEEEETTEEEEECTTCCHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSS---EEEECTTSCHHHHH-HCSEEC
T ss_pred CEEEEEcCCcEEEEecCCCChHHHHHHHHHHcCCCHHHEEEECCChhhHHHHHHcC---cEEEcCCCcHHHHH-hCCEEc
Confidence 35555554 33445788899999999999999999999999999999999999 67777776677766 489999
Q ss_pred cCcccCCHHHHHhcc
Q 001380 284 KEIGSVSLNDILTGG 298 (1089)
Q Consensus 284 ~dl~el~i~~ll~~~ 298 (1089)
.+..+-.+...|...
T Consensus 254 ~~~~e~Gv~~~i~~~ 268 (279)
T 4dw8_A 254 LTNDEDGVAEAIERI 268 (279)
T ss_dssp CCGGGTHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHH
Confidence 998887777776654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=3.2e-10 Score=129.84 Aligned_cols=228 Identities=12% Similarity=0.079 Sum_probs=142.3
Q ss_pred CceEEEeecCCe---EEEEe-------C-----CCCEEEEEeC--CCCEEEEEecCCCCCCCCCCCCccccCCcceeEEe
Q 001380 603 PGKLAIDILNNR---LFISD-------S-----NHNRIVVTDL--DGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYN 665 (1089)
Q Consensus 603 P~~vavd~~~g~---L~vsd-------~-----~~~~I~~~~~--~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d 665 (1089)
|..+++++ +|+ +|+++ . ..+.+.+++. +|+....+..... .....|++++++
T Consensus 85 ~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~----------~~~~~~~~~~~s 153 (365)
T 1jof_A 85 PRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEY----------QENTGIHGMVFD 153 (365)
T ss_dssp GGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEEC----------CTTCCEEEEEEC
T ss_pred CccEEECC-CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEe----------CCCCcceEEEEC
Confidence 66788887 555 33444 1 3566666654 5766544332100 012478999999
Q ss_pred eCCCEEEEEECCCCEEEEEECC-CCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEE
Q 001380 666 AKKNLLYVADTENHALREIDFV-NDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHS 744 (1089)
Q Consensus 666 ~~g~~lyVaD~~n~~I~~~d~~-~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~ 744 (1089)
|+|+.||++|.+++.|+.++.+ +|.+..+....... .-..|++++|+|+|+.||+++...+.|..|+
T Consensus 154 pdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~------------~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~ 221 (365)
T 1jof_A 154 PTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD------------PGDHPRWVAMHPTGNYLYALMEAGNRICEYV 221 (365)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS------------TTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC------------CCCCCCEeEECCCCCEEEEEECCCCeEEEEE
Confidence 9999999999988999999987 67665432110000 0136999999999999999998777776654
Q ss_pred --CCCCeEE----EEeCCCccccCCCCCCCCccccCCceEE-EcCCCCEEEEEeCCCC-----eEEEEEcC-CCCeEEEe
Q 001380 745 --TVDGVTR----AFSGDGYERNLNGSSSLNTSFAQPSGIS-LSPDFMEIYVADSESS-----SIRALNLK-TGGSRLLA 811 (1089)
Q Consensus 745 --~~~g~~~----~~~g~g~~~~~~g~~~~~~~~~~P~gla-v~~~g~~lyvad~~~~-----~I~~~~~~-~~~~~~~~ 811 (1089)
..+|... .+..... ...+..........|.+++ ++|||+.||+++...+ +|..++.+ ++....+.
T Consensus 222 ~~~~~g~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~ 299 (365)
T 1jof_A 222 IDPATHMPVYTHHSFPLIPP--GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQL 299 (365)
T ss_dssp ECTTTCCEEEEEEEEESSCT--TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEE
T ss_pred EeCCCCcEEEccceEEcCCC--CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEee
Confidence 4456543 2221100 0000000000112588999 9999999999987765 89998875 45443221
Q ss_pred cCCCCCCCCccccCCCCCccccccccCceEEEEcc---CC-cEEEEeCCCCEEEEEeCCCCeEEEE
Q 001380 812 GGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAK---NG-QIYVADSYNHKIKKLDPASNRVSTL 873 (1089)
Q Consensus 812 g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~---~G-~lyVaD~~n~~I~~~d~~~~~v~t~ 873 (1089)
.. .. ..-..|.+++++| +| .||+++..++.|..++.+++.+..+
T Consensus 300 ~~----------~~--------~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~l~~~ 347 (365)
T 1jof_A 300 FL----------SP--------TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFLHRV 347 (365)
T ss_dssp EE----------EE--------CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEEEEE
T ss_pred ee----------ee--------cCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhhCcee
Confidence 00 00 0012477889998 67 5999988889998887766655443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-11 Score=137.20 Aligned_cols=90 Identities=21% Similarity=0.439 Sum_probs=79.6
Q ss_pred cCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHH
Q 001380 451 LKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRE 530 (1089)
Q Consensus 451 ~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~ 530 (1089)
.++|+|||+||++||++|+.+.|.+.++.++++++ +.++.|++ |.+.++++.
T Consensus 24 ~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~-~~~~~vd~---------------------------~~~~~~~~~ 75 (287)
T 3qou_A 24 SMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQ-FILAKLDC---------------------------DAEQMIAAQ 75 (287)
T ss_dssp TTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSS-SEEEEEET---------------------------TTCHHHHHT
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCC-eEEEEEeC---------------------------ccCHHHHHH
Confidence 35899999999999999999999999999999864 88999965 445689999
Q ss_pred hCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 531 LGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 531 ~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
|+|.++||++++ ++|+++.++.|..+.+.+.+++...+
T Consensus 76 ~~v~~~Pt~~~~-~~G~~~~~~~g~~~~~~l~~~l~~~l 113 (287)
T 3qou_A 76 FGLRAIPTVYLF-QNGQPVDGFQGPQPEEAIRALLDXVL 113 (287)
T ss_dssp TTCCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHS
T ss_pred cCCCCCCeEEEE-ECCEEEEEeeCCCCHHHHHHHHHHHc
Confidence 999999999999 79999999999988888888876643
|
| >3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.24 E-value=8.8e-12 Score=130.95 Aligned_cols=103 Identities=18% Similarity=0.338 Sum_probs=87.6
Q ss_pred CCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccc
Q 001380 439 WLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHP 518 (1089)
Q Consensus 439 ~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (1089)
.+++..+.. ...++|++||+||++||++|+.+.|.+.++++++++. +.++.|++
T Consensus 101 ~l~~~~f~~-~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~-v~~~~vd~------------------------ 154 (210)
T 3apq_A 101 TLERREFDA-AVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGL-LRIGAVNC------------------------ 154 (210)
T ss_dssp ECCHHHHHH-HHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTT-BEEEEEET------------------------
T ss_pred EecHHHHHH-HHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCc-eEEEEEEC------------------------
Confidence 345555544 3357899999999999999999999999999999764 88999865
Q ss_pred eeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHH
Q 001380 519 VVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLF 571 (1089)
Q Consensus 519 v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~ 571 (1089)
|.+.++++.|+|.++|+++++ ++|+++.++.|..+.+.+.++|+..+..
T Consensus 155 ---~~~~~l~~~~~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~i~~~l~~ 203 (210)
T 3apq_A 155 ---GDDRMLCRMKGVNSYPSLFIF-RSGMAAVKYNGDRSKESLVAFAMQHVRS 203 (210)
T ss_dssp ---TTCHHHHHHTTCCSSSEEEEE-CTTSCCEECCSCCCHHHHHHHHHHHHHC
T ss_pred ---CccHHHHHHcCCCcCCeEEEE-ECCCceeEecCCCCHHHHHHHHHHhCcc
Confidence 445689999999999999999 9999999999999999999999888753
|
| >2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.5e-11 Score=116.34 Aligned_cols=98 Identities=21% Similarity=0.273 Sum_probs=77.0
Q ss_pred CCCceeeccccc--CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCcc
Q 001380 440 LNTAPLQFRRDL--KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISH 517 (1089)
Q Consensus 440 ~~g~~~~l~~~~--~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (1089)
++|...++.+.+ .+|++||+||++||++|+.+.|.|.++++++ .++.++.|.+
T Consensus 8 ~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~--~~v~~~~vd~----------------------- 62 (118)
T 2f51_A 8 FNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN--KDVTFIKVDV----------------------- 62 (118)
T ss_dssp ECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHC--TTSEEEEEET-----------------------
T ss_pred ecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC--CCeEEEEEEC-----------------------
Confidence 355544442123 4899999999999999999999999999998 4688899865
Q ss_pred ceeecCChhHHHHhCCCceeEEEEECC---CCcEEEEecCCCchhhHHHHHHH
Q 001380 518 PVVNDGDMNLWRELGVNSWPTFAVVGP---NGKLLAQLAGEGHRKDLDDLVEA 567 (1089)
Q Consensus 518 ~v~~d~~~~l~~~~~v~~~Pt~~lid~---~G~i~~~~~G~~~~~~l~~~l~~ 567 (1089)
|.+.++++.|+|.++|++++++. +|+++.++.|.... ++++.++.
T Consensus 63 ----~~~~~~~~~~~i~~~Pt~~~~~~~~~~G~~~~~~~G~~~~-~l~~~~~~ 110 (118)
T 2f51_A 63 ----DKNGNAADAYGVSSIPALFFVKKEGNEIKTLDQFVGADVS-RIKADIEK 110 (118)
T ss_dssp ----TTCHHHHHHTTCCSSSEEEEEEEETTEEEEEEEEESCCHH-HHHHHHHH
T ss_pred ----CCCHHHHHhcCCCCCCEEEEEeCCCCcceEEEeecCCCHH-HHHHHHHH
Confidence 34567999999999999999965 49999999997643 45555544
|
| >3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.23 E-value=6.7e-12 Score=121.83 Aligned_cols=98 Identities=16% Similarity=0.165 Sum_probs=77.3
Q ss_pred cCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHH
Q 001380 451 LKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRE 530 (1089)
Q Consensus 451 ~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~ 530 (1089)
+++ ++||+||++||++|+.+.|.|.+++++|+ +.++.|++.. ..+.. ..|...+++++
T Consensus 30 ~~~-~vlv~F~a~wC~~C~~~~p~l~~l~~~~~---v~~~~vd~~~---~~~~~---------------~~d~~~~l~~~ 87 (135)
T 3emx_A 30 LQG-DAILAVYSKTCPHCHRDWPQLIQASKEVD---VPIVMFIWGS---LIGER---------------ELSAARLEMNK 87 (135)
T ss_dssp HTS-SEEEEEEETTCHHHHHHHHHHHHHHTTCC---SCEEEEEECT---TCCHH---------------HHHHHHHHHHH
T ss_pred hCC-cEEEEEECCcCHhhhHhChhHHHHHHHCC---CEEEEEECCC---chhhh---------------hhhhhHHHHHH
Confidence 345 89999999999999999999999999886 6677775521 11111 11345688999
Q ss_pred hCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHH
Q 001380 531 LGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLF 571 (1089)
Q Consensus 531 ~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~ 571 (1089)
|+|.++|++++++ +|+++.++.|....+.+.++++.+++.
T Consensus 88 ~~v~~~Pt~~~~~-~G~~v~~~~G~~~~~~~~~~i~~~~~~ 127 (135)
T 3emx_A 88 AGVEGTPTLVFYK-EGRIVDKLVGATPWSLKVEKAREIYGG 127 (135)
T ss_dssp HTCCSSSEEEEEE-TTEEEEEEESCCCHHHHHHHHHHHC--
T ss_pred cCCceeCeEEEEc-CCEEEEEEeCCCCHHHHHHHHHHHhCC
Confidence 9999999888885 999999999999999999888887764
|
| >1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A | Back alignment and structure |
|---|
Probab=99.23 E-value=7.9e-13 Score=132.99 Aligned_cols=104 Identities=12% Similarity=0.107 Sum_probs=79.0
Q ss_pred ceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeec
Q 001380 443 APLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVND 522 (1089)
Q Consensus 443 ~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d 522 (1089)
+.++. ...+||+|||+|||+||++|+.+.|.|.++.+.++. ++.++.|++ |
T Consensus 37 ~~~~~-~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~-~~~~~~v~~---------------------------d 87 (164)
T 1sen_A 37 DGKKE-AAASGLPLMVIIHKSWCGACKALKPKFAESTEISEL-SHNFVMVNL---------------------------E 87 (164)
T ss_dssp HHHHH-HHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHH-HTTSEEEEE---------------------------E
T ss_pred HHHHH-HHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhc-CCeEEEEEe---------------------------c
Confidence 34555 566899999999999999999999999998766542 234455533 1
Q ss_pred CChh-HHHHhCC--CceeEEEEECCCCcEEEEecCC----------CchhhHHHHHHHHHHHhccc
Q 001380 523 GDMN-LWRELGV--NSWPTFAVVGPNGKLLAQLAGE----------GHRKDLDDLVEAALLFYGKK 575 (1089)
Q Consensus 523 ~~~~-l~~~~~v--~~~Pt~~lid~~G~i~~~~~G~----------~~~~~l~~~l~~~l~~~~~~ 575 (1089)
.+.. +++.|++ .++|+++++|++|+++.++.|. ...+.+.+.|+++++.....
T Consensus 88 ~~~~~~~~~~~~~~~~~Pt~~~~d~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 153 (164)
T 1sen_A 88 DEEEPKDEDFSPDGGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERLTGD 153 (164)
T ss_dssp GGGSCSCGGGCTTCSCSSEEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHHHHGGG
T ss_pred CCchHHHHHhcccCCcCCeEEEECCCCCEEEEEeCCCCccchhcccCCHHHHHHHHHHHHHhccHh
Confidence 1112 4566777 6699999999999999888884 67889999999988877654
|
| >1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=5.4e-12 Score=120.29 Aligned_cols=88 Identities=23% Similarity=0.475 Sum_probs=72.2
Q ss_pred CCCEEEEEEecCCCc--------------chhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCcc
Q 001380 452 KGKVVVLDFWTYCCI--------------NCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISH 517 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~--------------~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (1089)
+||++||+||++||+ +|+.+.|.+++++++|+++ +.++.|.+
T Consensus 20 ~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~-~~~~~vd~----------------------- 75 (123)
T 1oaz_A 20 ADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGK-LTVAKLNI----------------------- 75 (123)
T ss_dssp CSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC--------CEEEEEET-----------------------
T ss_pred CCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCC-eEEEEEEC-----------------------
Confidence 689999999999999 9999999999999988764 88888865
Q ss_pred ceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 518 PVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 518 ~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
|.+.+++++|+|.++|+++++ ++|+++.++.|..+.+++.++|+++
T Consensus 76 ----d~~~~l~~~~~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~ 121 (123)
T 1oaz_A 76 ----DQNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDAN 121 (123)
T ss_dssp ----TSCTTTGGGGTCCBSSEEEEE-ESSSEEEEEESCCCHHHHHHHHTTT
T ss_pred ----CCCHHHHHHcCCCccCEEEEE-ECCEEEEEEeCCCCHHHHHHHHHHH
Confidence 445679999999999999999 9999999999998888888887653
|
| >3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0 | Back alignment and structure |
|---|
Probab=99.22 E-value=4.9e-12 Score=140.02 Aligned_cols=125 Identities=8% Similarity=0.021 Sum_probs=87.7
Q ss_pred CCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHC-CCCCCCccEEEEcC----CccCCCCCHHHHHHHHHHcCCCCC
Q 001380 166 GFPGALELINQCKSKGLKVAVASSADRIKVDANLAAA-GLPVSMFDAIVSAD----AFENLKPAPDIFLSASKILNVPTS 240 (1089)
Q Consensus 166 ~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~-gl~~~~fd~i~~~~----~~~~~KP~~~~~~~~l~~lgv~p~ 240 (1089)
.+++..+++..+....+++.+..+ .+....+++.+ ... ..+..+.+.. ....+.+|+..++.+++++|++++
T Consensus 143 ~~~~~~~~~~~~~~~~~ki~~~~~--~~~~~~~~~~l~~~~-~~~~~~~s~~~~~ei~~~~~~K~~~l~~l~~~lgi~~~ 219 (290)
T 3dnp_A 143 FVESLSDLLMDEPVSAPVIEVYTE--HDIQHDITETITKAF-PAVDVIRVNDEKLNIVPKGVSKEAGLALVASELGLSMD 219 (290)
T ss_dssp ECSCHHHHHHHSCCCCSEEEEECC--GGGHHHHHHHHHHHC-TTEEEEEEETTEEEEEETTCCHHHHHHHHHHHTTCCGG
T ss_pred ccCCHHHHHhcCCCCceEEEEeCC--HHHHHHHHHHHHhhC-CcEEEEEeCCCeEEEEECCCCHHHHHHHHHHHcCCCHH
Confidence 355667777776666777755333 33444444442 111 2355555442 344578899999999999999999
Q ss_pred cEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhc
Q 001380 241 ECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTG 297 (1089)
Q Consensus 241 ~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~ 297 (1089)
++++|||+.||++|++.+| +.|..+...+++++ .+++++.+..+-.+...|..
T Consensus 220 ~~i~~GD~~NDi~m~~~ag---~~vam~na~~~~k~-~Ad~v~~s~~edGv~~~i~~ 272 (290)
T 3dnp_A 220 DVVAIGHQYDDLPMIELAG---LGVAMGNAVPEIKR-KADWVTRSNDEQGVAYMMKE 272 (290)
T ss_dssp GEEEEECSGGGHHHHHHSS---EEEECTTSCHHHHH-HSSEECCCTTTTHHHHHHHH
T ss_pred HEEEECCchhhHHHHHhcC---CEEEecCCcHHHHH-hcCEECCCCCccHHHHHHHH
Confidence 9999999999999999999 45666665566655 58999999888655666654
|
| >2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.86 E-value=1e-12 Score=126.70 Aligned_cols=103 Identities=19% Similarity=0.288 Sum_probs=83.9
Q ss_pred ceeecccccCCCEEEEEEecCCCcchhhhhhhH---HHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccce
Q 001380 443 APLQFRRDLKGKVVVLDFWTYCCINCMHVLPDL---EFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPV 519 (1089)
Q Consensus 443 ~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l---~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v 519 (1089)
+.+++ ...+||++||+||++||++|+.+.|.+ .++.+.+++ ++.++.|.++ +
T Consensus 10 ~~~~~-~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~-----~------------------ 64 (130)
T 2lst_A 10 EALAL-AQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEA-RFVVASVSVD-----T------------------ 64 (130)
Confidence 34555 667899999999999999999999999 888887765 4777777431 1
Q ss_pred eecCChhHHHHhCCCceeEEEEECC-CCcE--EEEecCCCchhhHHHHHHHHHHHh
Q 001380 520 VNDGDMNLWRELGVNSWPTFAVVGP-NGKL--LAQLAGEGHRKDLDDLVEAALLFY 572 (1089)
Q Consensus 520 ~~d~~~~l~~~~~v~~~Pt~~lid~-~G~i--~~~~~G~~~~~~l~~~l~~~l~~~ 572 (1089)
+...++++.|+|.++|+++++|+ +|++ +.++.|..+.+.+.++|+.+++..
T Consensus 65 --~~~~~~~~~~~v~~~Pt~~~~d~~~G~~~~~~~~~G~~~~~~l~~~l~~~~~~~ 118 (130)
T 2lst_A 65 --PEGQELARRYRVPGTPTFVFLVPKAGAWEEVGRLFGSRPRAEFLKELRQVCVKG 118 (130)
Confidence 23467899999999999999996 5999 888999888889999888877643
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.22 E-value=7.4e-10 Score=126.25 Aligned_cols=233 Identities=15% Similarity=0.135 Sum_probs=150.3
Q ss_pred CCCCceEEEeecCCeEEEEeCCC------CEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEE
Q 001380 600 LKFPGKLAIDILNNRLFISDSNH------NRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLY 672 (1089)
Q Consensus 600 l~~P~~vavd~~~g~L~vsd~~~------~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~ly 672 (1089)
+..|..+.+.+ +| +||+..++ +.|.++|.. ++++.++..++.. -..+.++.+.|+++.+|
T Consensus 137 ~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~-----------~~~~Yd~~~~p~~~~mv 203 (462)
T 2ece_A 137 YSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGD-----------QYLAYDFWWNLPNEVLV 203 (462)
T ss_dssp EEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTT-----------CCCCCCEEEETTTTEEE
T ss_pred CCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCC-----------ccccceEEECCCCCEEE
Confidence 34688899997 66 99998776 799999987 7888777543111 11345677899999899
Q ss_pred EEECC------------------CCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEE--ecCCCEEEE
Q 001380 673 VADTE------------------NHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCY--KPINEKVYI 732 (1089)
Q Consensus 673 VaD~~------------------n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~--~~~g~~lyv 732 (1089)
+++++ .++|..+|++++++......|..+ ..|.+|.+ +|++..+||
T Consensus 204 sS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g--------------~~P~~i~f~~~Pdg~~aYV 269 (462)
T 2ece_A 204 SSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN--------------RMALELRPLHDPTKLMGFI 269 (462)
T ss_dssp ECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE--------------EEEEEEEECSSTTCCEEEE
T ss_pred EccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC--------------CccceeEeeECCCCCEEEE
Confidence 98853 799999999887654433333211 25888877 999999999
Q ss_pred EEC-----CCcEEEEEECCCCeEEEEeC--CCccccCCCCCC-C----CccccCCceEEEcCCCCEEEEEeCCCCeEEEE
Q 001380 733 AMA-----GQHQIWEHSTVDGVTRAFSG--DGYERNLNGSSS-L----NTSFAQPSGISLSPDFMEIYVADSESSSIRAL 800 (1089)
Q Consensus 733 ad~-----~~~~I~~~~~~~g~~~~~~g--~g~~~~~~g~~~-~----~~~~~~P~glav~~~g~~lyvad~~~~~I~~~ 800 (1089)
+.. .++.|+.+..++|......- .... ...+..+ . .+.-..|.+|.+++||+.|||++.+.+.|.+|
T Consensus 270 ~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~-~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~Vavf 348 (462)
T 2ece_A 270 NMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAE-PLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQY 348 (462)
T ss_dssp EEEEETTTCCEEEEEEEEETTEEEEEEEEEECCE-ECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEE
T ss_pred EEeeeccCCCceEEEEEecCCceeEEEEEeCCCc-cccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEE
Confidence 999 88999887766664322210 0000 0000000 0 00024699999999999999999999999999
Q ss_pred EcCCCC-eEEE---ecCCCCCCCCccccCCCCCccccccccCceEEEEccCC-cEEEEeC-------------CCCEEEE
Q 001380 801 NLKTGG-SRLL---AGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNG-QIYVADS-------------YNHKIKK 862 (1089)
Q Consensus 801 ~~~~~~-~~~~---~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G-~lyVaD~-------------~n~~I~~ 862 (1089)
+..+.. .+.+ ..|+.. ...-...|. ..-.+|.++++++|| .|||+++ .+..+.+
T Consensus 349 dV~d~~~~~lv~~I~tGG~~-----~~~~~~~G~---~~~ggPr~~~lSpDGk~LyVaNsl~~~wd~Qfyp~~~~~~~~~ 420 (462)
T 2ece_A 349 DISNPFKPVLTGKVKLGGIF-----HRADHPAGH---KLTGAPQMLEISRDGRRVYVTNSLYSTWDNQFYPEGLKGWMVK 420 (462)
T ss_dssp ECSSTTSCEEEEEEECBTTT-----TCBCCTTSC---CCCSCCCCEEECTTSSEEEEECCCCHHHHHHHSTTCCCCEEEE
T ss_pred EecCCCCcEEEEEEEeCCee-----ccccccccc---cCCCCCCEEEEcCCCCEEEEEcCCcccccccccCCCCceEEEE
Confidence 975332 2221 111000 000000010 012369999999999 5999982 4556665
Q ss_pred E--eCCCC
Q 001380 863 L--DPASN 868 (1089)
Q Consensus 863 ~--d~~~~ 868 (1089)
+ |+++|
T Consensus 421 ~~vd~~~G 428 (462)
T 2ece_A 421 LNANPSGG 428 (462)
T ss_dssp EEECTTSC
T ss_pred EEecCCCC
Confidence 5 66666
|
| >2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.6e-12 Score=123.33 Aligned_cols=89 Identities=15% Similarity=0.133 Sum_probs=74.6
Q ss_pred ccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 450 ~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
.-+++++||+||++||++|+.+.|.|++++++|++.++.++.|.+ |.+.++++
T Consensus 23 ~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~---------------------------~~~~~~~~ 75 (137)
T 2dj0_A 23 RDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDV---------------------------GRYTDVST 75 (137)
T ss_dssp HSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCT---------------------------TTCHHHHH
T ss_pred cCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeC---------------------------ccCHHHHH
Confidence 345679999999999999999999999999999876799998854 33456778
Q ss_pred HhCCC------ceeEEEEECCCCcEEEEecCCCchhhHHHHHH
Q 001380 530 ELGVN------SWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVE 566 (1089)
Q Consensus 530 ~~~v~------~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~ 566 (1089)
.|+|. ++|+++++ ++|+++.++.|..+.+.+.+++.
T Consensus 76 ~~~v~~~~~~~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~ 117 (137)
T 2dj0_A 76 RYKVSTSPLTKQLPTLILF-QGGKEAMRRPQIDKKGRAVSWTF 117 (137)
T ss_dssp HTTCCCCSSSSCSSEEEEE-SSSSEEEEESCBCSSSCBCCCCC
T ss_pred HccCcccCCcCCCCEEEEE-ECCEEEEEecCcCchHHHHHHHh
Confidence 88887 99999999 89999999999887776665553
|
| >3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.8e-11 Score=129.83 Aligned_cols=90 Identities=23% Similarity=0.475 Sum_probs=80.7
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
++|++||+||++||++|+.+.|.|.+++++|+++ +.++.|++ |.+..+++.|
T Consensus 29 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~vd~---------------------------d~~~~l~~~~ 80 (222)
T 3dxb_A 29 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNI---------------------------DQNPGTAPKY 80 (222)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEET---------------------------TTCTTTGGGG
T ss_pred cCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCC-cEEEEEEC---------------------------CCCHHHHHHc
Confidence 6899999999999999999999999999999865 88898865 4456789999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
+|.++|+++++ ++|+++.++.|..+.+.+.++|+.+++
T Consensus 81 ~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~ 118 (222)
T 3dxb_A 81 GIRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANLA 118 (222)
T ss_dssp TCCSBSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHSC
T ss_pred CCCcCCEEEEE-ECCeEEEEeccccChHHHHHHHHhhcc
Confidence 99999999999 599999999999999999999887764
|
| >2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.6e-11 Score=116.43 Aligned_cols=88 Identities=25% Similarity=0.403 Sum_probs=76.4
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+|++||+||++||++|+.+.|.|.++.+++++ ++.++.|++ |.+.++++.|
T Consensus 29 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~---------------------------~~~~~~~~~~ 80 (121)
T 2i1u_A 29 SNKPVLVDFWATWCGPCKMVAPVLEEIATERAT-DLTVAKLDV---------------------------DTNPETARNF 80 (121)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEET---------------------------TTCHHHHHHT
T ss_pred CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEEC---------------------------CCCHHHHHhc
Confidence 578999999999999999999999999999976 488898865 3456789999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
+|.++|+++++ ++|+++.++.|..+.+.+.++|+++
T Consensus 81 ~i~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~l~~~ 116 (121)
T 2i1u_A 81 QVVSIPTLILF-KDGQPVKRIVGAKGKAALLRELSDV 116 (121)
T ss_dssp TCCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHTCSC
T ss_pred CCCcCCEEEEE-ECCEEEEEecCCCCHHHHHHHHHHH
Confidence 99999999888 6999999999998888887776543
|
| >1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=3.2e-11 Score=106.31 Aligned_cols=82 Identities=20% Similarity=0.278 Sum_probs=70.5
Q ss_pred CEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhCC
Q 001380 454 KVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGV 533 (1089)
Q Consensus 454 k~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v 533 (1089)
.++|+.||++||++|+.+.|.|+++++++++ ++.++.|++ |.+.++++.|++
T Consensus 3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~---------------------------~~~~~~~~~~~v 54 (85)
T 1fo5_A 3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPD-AVEVEYINV---------------------------MENPQKAMEYGI 54 (85)
T ss_dssp CEEEEEEECCCSSCCCTHHHHHHHHHHHCSS-SEEEEEEES---------------------------SSSCCTTTSTTT
T ss_pred ceEEEEEeCCCCCchHHHHHHHHHHHHHcCC-ceEEEEEEC---------------------------CCCHHHHHHCCC
Confidence 5789999999999999999999999999985 588998865 344578899999
Q ss_pred CceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 534 NSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 534 ~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
.++|++++ +|++ ++.|..+.+.+.++|+++
T Consensus 55 ~~~Pt~~~---~G~~--~~~G~~~~~~l~~~l~~~ 84 (85)
T 1fo5_A 55 MAVPTIVI---NGDV--EFIGAPTKEALVEAIKKR 84 (85)
T ss_dssp CCSSEEEE---TTEE--ECCSSSSSHHHHHHHHHH
T ss_pred cccCEEEE---CCEE--eeecCCCHHHHHHHHHHh
Confidence 99999988 8887 788888888888888764
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.19 E-value=3.2e-09 Score=120.48 Aligned_cols=249 Identities=12% Similarity=0.073 Sum_probs=144.6
Q ss_pred CCceEEEeecCCeEEEEeC---------CCCEEEEEeCC-CCEEEEEecCC-CCCCCCCCCCccccCCcceeEEeeCCCE
Q 001380 602 FPGKLAIDILNNRLFISDS---------NHNRIVVTDLD-GNFIVQIGSSG-EEGLRDGSFDDATFNRPQGLAYNAKKNL 670 (1089)
Q Consensus 602 ~P~~vavd~~~g~L~vsd~---------~~~~I~~~~~~-g~~~~~i~~~g-~~g~~dG~~~~~~f~~P~gla~d~~g~~ 670 (1089)
.|. ++++|++..|||+++ ..+.|.++|.. ++.+..|..++ .. ...-.+|.+++++++|++
T Consensus 80 ~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r--------~~~g~~P~~~a~spDGk~ 150 (386)
T 3sjl_D 80 LPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR--------FLVGTYPWMTSLTPDGKT 150 (386)
T ss_dssp SCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC--------CCBSCCGGGEEECTTSSE
T ss_pred CCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccc--------cccCCCCceEEEcCCCCE
Confidence 465 999998888999985 24679999987 66666665431 10 001237999999999999
Q ss_pred EEEEECC-CCEEEEEECCCCeEE-EEecCCCC-----CC--------CC-------CC-CCc-ccccccC----Ccee--
Q 001380 671 LYVADTE-NHALREIDFVNDTVR-TLAGNGTK-----GS--------DY-------QG-GEK-GTSQLLN----SPWD-- 720 (1089)
Q Consensus 671 lyVaD~~-n~~I~~~d~~~g~v~-~~ag~g~~-----~~--------~~-------~~-~~~-~~~~~l~----~P~~-- 720 (1089)
+||++.. .+.|.+||..++++. ++.-.|.. +. +. .. +.. .....+. .|..
T Consensus 151 lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~ 230 (386)
T 3sjl_D 151 LLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINH 230 (386)
T ss_dssp EEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSC
T ss_pred EEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecccccccccc
Confidence 9999974 789999999987754 44221100 00 00 00 000 0000010 1110
Q ss_pred EEEe-cCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCc---eEEEcCCCCEEEEEeC----
Q 001380 721 VCYK-PINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPS---GISLSPDFMEIYVADS---- 792 (1089)
Q Consensus 721 la~~-~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~---glav~~~g~~lyvad~---- 792 (1089)
.+++ ++|..+|+++ .++|+.+|..++......... .........+ ..|. .+++++++++|||+..
T Consensus 231 ~~~~~~dG~~~~vs~--~g~V~v~d~~~~~~~v~~~~~----~~~~~~~~~g-~~p~g~q~~a~~~~~~~lyV~~~~~~~ 303 (386)
T 3sjl_D 231 PAYSQKAGRLVWPTY--TGKIHQIDLSSGDAKFLPAVE----ALTEAERADG-WRPGGWQQVAYHRALDRIYLLVDQRDE 303 (386)
T ss_dssp CEEETTTTEEEEEBT--TSEEEEEECTTSSCEECCCEE----SSCHHHHHTT-EEECSSSCEEEETTTTEEEEEEEECCT
T ss_pred ceeEcCCCcEEEEeC--CCEEEEEECCCCcceeeccee----cccccccccc-ccCCCcceeeECCCCCeEEEEeccccc
Confidence 2333 2221233333 245555555444322111000 0000000000 0122 3788999999999864
Q ss_pred -----CCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc--EEEEeCCCCEEEEEeC
Q 001380 793 -----ESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ--IYVADSYNHKIKKLDP 865 (1089)
Q Consensus 793 -----~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~--lyVaD~~n~~I~~~d~ 865 (1089)
..++|.++|..++.+..... .| ..|+++++++||+ +|+++...+.|.+||.
T Consensus 304 ~~hk~~~~~V~viD~~t~kv~~~i~-----------vg-----------~~~~~lavs~D~~~~ly~tn~~~~~VsViD~ 361 (386)
T 3sjl_D 304 WRHKTASRFVVVLDAKTGERLAKFE-----------MG-----------HEIDSINVSQDEKPLLYALSTGDKTLYIHDA 361 (386)
T ss_dssp TCTTSCEEEEEEEETTTCCEEEEEE-----------EE-----------EEECEEEECSSSSCEEEEEETTTTEEEEEET
T ss_pred cccCCCCCEEEEEECCCCeEEEEEE-----------CC-----------CCcceEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 23689999999877642211 00 2588999999985 8999999999999999
Q ss_pred CCCeEEEEeccCCCCCCCCcccccccCCCceEEEccC
Q 001380 866 ASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQN 902 (1089)
Q Consensus 866 ~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~ 902 (1089)
.++++..-.. ....|..|++.+|
T Consensus 362 ~t~k~~~~i~--------------~~~~p~~l~~s~d 384 (386)
T 3sjl_D 362 ESGEELRSVN--------------QLGHGPQVITTAD 384 (386)
T ss_dssp TTCCEEEEEC--------------CCCSSCCEEEECC
T ss_pred CCCcEEEEec--------------CCCCCceeEECCc
Confidence 8776654433 2345888887654
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.4e-09 Score=118.56 Aligned_cols=216 Identities=13% Similarity=0.132 Sum_probs=156.7
Q ss_pred eecCCeEEEEeCC-------------CCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEE
Q 001380 609 DILNNRLFISDSN-------------HNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVAD 675 (1089)
Q Consensus 609 d~~~g~L~vsd~~-------------~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD 675 (1089)
.+.++.||.++.. .+.|++++.+|.....+... .+.++.++|+.||++|
T Consensus 61 ~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~------------------~~~~~s~~g~~Iy~~~ 122 (302)
T 3s25_A 61 NADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD------------------PCIYASLIGNYIYYLH 122 (302)
T ss_dssp EECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS------------------CEEEEEEETTEEEEEE
T ss_pred EEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC------------------CccEEEEeCCEEEEEe
Confidence 3458889988654 46899999998765554332 3446777899999999
Q ss_pred ---CCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEE
Q 001380 676 ---TENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRA 752 (1089)
Q Consensus 676 ---~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~ 752 (1089)
.++..|+++++++...+++..... .++++.++.||+++.+..+|++.+..++..+.
T Consensus 123 ~~~~~~~~Iy~~~~dGs~~~~lt~~~~---------------------~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~ 181 (302)
T 3s25_A 123 YDTQTATSLYRIRIDGEEKKKIKNHYL---------------------FTCNTSDRYFYYNNPKNGQLYRYDTASQSEAL 181 (302)
T ss_dssp ESSSSCEEEEEEETTSCCCEEEESSCC---------------------CCSEEETTEEEEECTTTCCEEEEETTTTEEEE
T ss_pred ecCCCCceEEEEECCCCCeEEEeCCCc---------------------eEeeEECCEEEEEeCCCceEEEEECCCCCEEE
Confidence 678899999999877777753210 23466788999999989999999998887666
Q ss_pred EeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCC-CeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCcc
Q 001380 753 FSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSES-SSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMG 831 (1089)
Q Consensus 753 ~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~-~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~ 831 (1089)
+.. + +..+++.|+++.||+++... ..|.+++++++..+.+....
T Consensus 182 l~~-~-----------------~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~~----------------- 226 (302)
T 3s25_A 182 FYD-C-----------------NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEAN----------------- 226 (302)
T ss_dssp EEC-S-----------------CEEEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCSC-----------------
T ss_pred EeC-C-----------------CccceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCCC-----------------
Confidence 642 1 12234668888999999764 58999999987766553210
Q ss_pred ccccccCceEEEEccCC-cEEEE-eCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEE
Q 001380 832 SEVLLQHPLGVYCAKNG-QIYVA-DSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIAD 909 (1089)
Q Consensus 832 ~~~~l~~P~gva~~~~G-~lyVa-D~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad 909 (1089)
+ | .++++| .||++ +...+.|.+++.+|....++... ...+|++. ++.||++|
T Consensus 227 ----~--~---~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~----------------~~~~i~i~-~d~Iy~td 280 (302)
T 3s25_A 227 ----I--E---HYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAKG----------------EFCNINVT-SQYVYFTD 280 (302)
T ss_dssp ----E--E---EEEEETTEEEEEECSSSCEEEEEETTSCCCEEEEES----------------CEEEEEEC-SSEEEEEE
T ss_pred ----c--c---eEEECCCEEEEEECCCCcEEEEEECCCCccEEeeCC----------------ccceEEEe-CCEEEEEE
Confidence 1 2 256655 68886 66678999999988776776521 12256665 45799999
Q ss_pred CCCCEEEEEeCCCCC
Q 001380 910 TNNNIIRYLDLNKEE 924 (1089)
Q Consensus 910 ~~n~~I~~~~~~~~~ 924 (1089)
...+.|.+++++|..
T Consensus 281 ~~~~~i~~~~~dGs~ 295 (302)
T 3s25_A 281 FVSNKEYCTSTQNPD 295 (302)
T ss_dssp TTTCCEEEEESSSCC
T ss_pred CCCCeEEEEECCCCC
Confidence 999999999988863
|
| >1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=5.1e-11 Score=112.50 Aligned_cols=90 Identities=12% Similarity=0.222 Sum_probs=70.9
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.|+++||+||++||++|+.+.|.|.++.++++. .+.++.+ +...+. +...++++.|
T Consensus 28 ~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~~-----~~~~~~------------------~~~~~~~~~~ 83 (118)
T 1zma_A 28 KKETATFFIGRKTCPYCRKFAGTLSGVVAETKA-HIYFINS-----EEPSQL------------------NDLQAFRSRY 83 (118)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC-CCEEEET-----TCGGGH------------------HHHHHHHHHH
T ss_pred CCCeEEEEEECCCCccHHHHHHHHHHHHHhcCC-eEEEEEC-----CCcCcH------------------HHHHHHHHHc
Confidence 578999999999999999999999999998863 3544443 222221 1234678899
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVE 566 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~ 566 (1089)
+|.++|+++++ ++|+++.++.|....+.+.++|+
T Consensus 84 ~i~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~ 117 (118)
T 1zma_A 84 GIPTVPGFVHI-TDGQINVRCDSSMSAQEIKDFAG 117 (118)
T ss_dssp TCCSSCEEEEE-ETTEEEEECCTTCCHHHHHHHHT
T ss_pred CCCCCCeEEEE-ECCEEEEEecCCCCHHHHHHHhh
Confidence 99999999999 69999999999988888877763
|
| >3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=4.4e-13 Score=151.00 Aligned_cols=72 Identities=21% Similarity=0.246 Sum_probs=59.2
Q ss_pred ccCCCCCHHHHHHHHHHc----------------------CC-----CCCcEEEEcCCh-hhHHHHHHcCCeEEEEcCCC
Q 001380 218 FENLKPAPDIFLSASKIL----------------------NV-----PTSECIVIEDAL-AGVQAAKAAQMRCIAVTTTL 269 (1089)
Q Consensus 218 ~~~~KP~~~~~~~~l~~l----------------------gv-----~p~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~ 269 (1089)
...+||.+.+|+.+++.+ |+ ++++++||||++ +||.+|+++||++++|.+|.
T Consensus 242 ~~~GKP~~~~y~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~~ti~V~~G~ 321 (352)
T 3kc2_A 242 YTLGKPTKLTYDFAHHVLIDWEKRLSGKIGQSVKQKLPLLGTKPSTSPFHAVFMVGDNPASDIIGAQNYGWNSCLVKTGV 321 (352)
T ss_dssp EECSTTCHHHHHHHHHHHHHHHHHHHC--------------CCTTTTTSSEEEEEESCTTTHHHHHHHHTCEEEECSSSS
T ss_pred eEecCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccccCCCcceEEEEecCcHHHHHHHHHcCCEEEEEccCC
Confidence 346899999999887654 22 569999999999 79999999999999999987
Q ss_pred C-HHHH-hhcCCcEEecCcccC
Q 001380 270 S-EERL-KEASPSLIRKEIGSV 289 (1089)
Q Consensus 270 ~-~~~l-~~~~~d~vi~dl~el 289 (1089)
. .+.. ....|+++++++.++
T Consensus 322 ~~~~~~~~~~~pd~vi~~l~el 343 (352)
T 3kc2_A 322 YNEGDDLKECKPTLIVNDVFDA 343 (352)
T ss_dssp CCTTCCCTTCCCSEECSSHHHH
T ss_pred CCcccccccCCCCEEECCHHHH
Confidence 3 3222 246899999999888
|
| >2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.7e-11 Score=116.30 Aligned_cols=101 Identities=16% Similarity=0.212 Sum_probs=77.7
Q ss_pred CCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCC----CCEEEEEEeCCCCCChhcHHHHHHHHHHcC
Q 001380 439 WLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD----MPFTVVGVHSAKFDNEKDLEAIRNAVLRYG 514 (1089)
Q Consensus 439 ~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~----~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~ 514 (1089)
.+++..+...-..++|++||+||++||++|+.+.|.|++++++|++ .++.++.|.++ +
T Consensus 11 ~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~-----~------------- 72 (121)
T 2djj_A 11 VVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDAT-----A------------- 72 (121)
T ss_dssp ECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETT-----T-------------
T ss_pred EecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECc-----c-------------
Confidence 3455555431124789999999999999999999999999999986 26888888642 1
Q ss_pred CccceeecCChhHHHHhCCCceeEEEEECCCCcE-EEEecCCCchhhHHHHHHHHH
Q 001380 515 ISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKL-LAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 515 ~~~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i-~~~~~G~~~~~~l~~~l~~~l 569 (1089)
+ .+++ +|.++|++++++++|++ +.++.|..+.+.+.++|++.+
T Consensus 73 ---------~-~~~~--~v~~~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~ 116 (121)
T 2djj_A 73 ---------N-DVPD--EIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENG 116 (121)
T ss_dssp ---------S-CCSS--CCSSSSEEEEECSSCTTSCCCCCCCSCHHHHHHHHHHTS
T ss_pred ---------c-cccc--ccCcCCeEEEEeCcCCCCceEecCCCCHHHHHHHHHhcc
Confidence 0 1333 99999999999888885 667889888888888877644
|
| >1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=2.4e-11 Score=107.14 Aligned_cols=82 Identities=21% Similarity=0.321 Sum_probs=69.6
Q ss_pred EEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhCCC
Q 001380 455 VVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVN 534 (1089)
Q Consensus 455 ~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~ 534 (1089)
++|++||++||++|+.+.|.|+++++++++ ++.++.|++ |.+.++++.|+|.
T Consensus 3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~---------------------------~~~~~~~~~~~v~ 54 (85)
T 1nho_A 3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGD-KIDVEKIDI---------------------------MVDREKAIEYGLM 54 (85)
T ss_dssp CCEEEESCSSSCCSTTHHHHHHHHHHHHCS-SCCEEEECT---------------------------TTCGGGGGGTCSS
T ss_pred EEEEEEECCCCcchHHHHHHHHHHHHHhcC-CeEEEEEEC---------------------------CCCHHHHHhCCce
Confidence 468999999999999999999999999985 478888854 3456789999999
Q ss_pred ceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 535 SWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 535 ~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
++|++++ +|++ ++.|..+.+.+.++|++.+
T Consensus 55 ~~Pt~~~---~G~~--~~~G~~~~~~l~~~l~~~l 84 (85)
T 1nho_A 55 AVPAIAI---NGVV--RFVGAPSREELFEAINDEM 84 (85)
T ss_dssp CSSEEEE---TTTE--EEECSSCCHHHHHHHHHHC
T ss_pred eeCEEEE---CCEE--EEccCCCHHHHHHHHHHHh
Confidence 9999988 8888 7778878888888887654
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.1e-09 Score=117.59 Aligned_cols=226 Identities=12% Similarity=0.151 Sum_probs=161.1
Q ss_pred CCCCCCCCceEEEeecCCeEEEEeCC-CCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEE
Q 001380 596 FTSPLKFPGKLAIDILNNRLFISDSN-HNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVA 674 (1089)
Q Consensus 596 ~~~~l~~P~~vavd~~~g~L~vsd~~-~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVa 674 (1089)
.++.|..=+.++.+ ++.+|+++.. .++|++++.+|.....+... .+..| .++|+.||.+
T Consensus 11 ~~~Ni~n~g~~~~~--g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~----------------~~~~i--~~~g~~Iyy~ 70 (302)
T 3s25_A 11 TAGNLYNAGLFCES--DGEVFFSNTNDNGRLYAMNIDGSNIHKLSND----------------TAMYI--NADKNYVYYV 70 (302)
T ss_dssp CTTTGGGTTCEEEE--TTEEEEEEGGGTTEEEEEETTSCSCEEEEEE----------------EEEEE--EECSSEEEEE
T ss_pred cccceecceEEEEe--CCEEEEEeCCCCceEEEEcCCCCCCEEccCC----------------ceeeE--EEcCCEEEEE
Confidence 35667777777765 8999999854 67999999998776666543 12344 4568888888
Q ss_pred ECC-------------CCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEE---CCCc
Q 001380 675 DTE-------------NHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAM---AGQH 738 (1089)
Q Consensus 675 D~~-------------n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad---~~~~ 738 (1089)
+.. .+.|++++++++..+.+.. -.+.++++.++.||+++ .++.
T Consensus 71 ~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~---------------------~~~~~~s~~g~~Iy~~~~~~~~~~ 129 (302)
T 3s25_A 71 RNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP---------------------DPCIYASLIGNYIYYLHYDTQTAT 129 (302)
T ss_dssp EECC------CCSSCCSEEEEEEETTSCCCEEEEC---------------------SCEEEEEEETTEEEEEEESSSSCE
T ss_pred ECCCCcccccceeccCCCeEEEEeCCCCcceEeec---------------------CCccEEEEeCCEEEEEeecCCCCc
Confidence 654 3689999999887666642 11335677789999999 6788
Q ss_pred EEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCC
Q 001380 739 QIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFP 818 (1089)
Q Consensus 739 ~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~ 818 (1089)
.|++++..+...+.+.... . ++++++|++||+++.+..+|++++++++..+.+..+
T Consensus 130 ~Iy~~~~dGs~~~~lt~~~------------~-------~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~----- 185 (302)
T 3s25_A 130 SLYRIRIDGEEKKKIKNHY------------L-------FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC----- 185 (302)
T ss_dssp EEEEEETTSCCCEEEESSC------------C-------CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS-----
T ss_pred eEEEEECCCCCeEEEeCCC------------c-------eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC-----
Confidence 9999999876666665321 0 345677889999999889999999987766655321
Q ss_pred CCccccCCCCCccccccccCceEEEEccC-CcEEEEeCCC-CEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCce
Q 001380 819 DNLFKFGDRDGMGSEVLLQHPLGVYCAKN-GQIYVADSYN-HKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAG 896 (1089)
Q Consensus 819 ~~l~~~g~~dg~~~~~~l~~P~gva~~~~-G~lyVaD~~n-~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~g 896 (1089)
+....+.|+ |.||+++... .+|.+++.+++..+.+... .+ |
T Consensus 186 --------------------~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~-------------~~--~-- 228 (302)
T 3s25_A 186 --------------------NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEA-------------NI--E-- 228 (302)
T ss_dssp --------------------CEEEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCS-------------CE--E--
T ss_pred --------------------CccceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCC-------------Cc--c--
Confidence 222334454 5799999764 6999999998887776421 11 2
Q ss_pred EEEccCC-cEEEE-ECCCCEEEEEeCCCCC
Q 001380 897 IIEAQNG-NLFIA-DTNNNIIRYLDLNKEE 924 (1089)
Q Consensus 897 i~vd~~G-~lyVa-d~~n~~I~~~~~~~~~ 924 (1089)
.++++| .||++ +...+.|.+++++|..
T Consensus 229 -~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 229 -HYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp -EEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred -eEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 245444 68886 5667899999999973
|
| >2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A | Back alignment and structure |
|---|
Probab=99.17 E-value=5.2e-11 Score=128.47 Aligned_cols=98 Identities=13% Similarity=0.146 Sum_probs=76.6
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCC---hHhHHHHHHHCCCC-CCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCC
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSAD---RIKVDANLAAAGLP-VSMFDAIVSADAFENLKPAPDIFLSASKILNVPTS 240 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~---~~~~~~~l~~~gl~-~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~ 240 (1089)
.++||+.++|+.|+++|++++|+||+. +..+...|+.+|+. ..+++.+++.++. .||.+ ...++ ..+. .
T Consensus 101 ~~~pg~~e~L~~L~~~Gi~i~iaTnr~~~~~~~~~~~L~~~Gl~~v~~~~vi~~~~~~--~K~~~--~~~~~-~~~~--~ 173 (258)
T 2i33_A 101 EALPGSIDFLKYTESKGVDIYYISNRKTNQLDATIKNLERVGAPQATKEHILLQDPKE--KGKEK--RRELV-SQTH--D 173 (258)
T ss_dssp EECTTHHHHHHHHHHTTCEEEEEEEEEGGGHHHHHHHHHHHTCSSCSTTTEEEECTTC--CSSHH--HHHHH-HHHE--E
T ss_pred CcCccHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHHHHHcCCCcCCCceEEECCCCC--CCcHH--HHHHH-HhCC--C
Confidence 789999999999999999999999987 56677888999995 1567888887643 45544 33332 3343 4
Q ss_pred cEEEEcCChhhHHHHH-------H---------cCCeEEEEcCCC
Q 001380 241 ECIVIEDALAGVQAAK-------A---------AQMRCIAVTTTL 269 (1089)
Q Consensus 241 ~~v~VGD~~~Di~aA~-------~---------aG~~~i~V~~g~ 269 (1089)
.|+||||+.+|+.+|. + +|+++|.+..+.
T Consensus 174 ~~l~VGDs~~Di~aA~~~~~~~r~a~v~~~~~~aG~~~i~lpn~~ 218 (258)
T 2i33_A 174 IVLFFGDNLSDFTGFDGKSVKDRNQAVTDSKAQFGEKFIIFPNPM 218 (258)
T ss_dssp EEEEEESSGGGSTTCSSCCHHHHHHHHHHTGGGBTTTEEECCCCS
T ss_pred ceEEeCCCHHHhcccccCCHHHHHHHHHHHHHHhcCceEECCCCC
Confidence 4999999999999992 4 899999987764
|
| >1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-11 Score=116.42 Aligned_cols=90 Identities=18% Similarity=0.357 Sum_probs=75.9
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCC--CEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDM--PFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~--~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
++|++||+||++||++|+.+.|.+.++++++++. .+.++.|.+ +.+.++++
T Consensus 23 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~---------------------------~~~~~~~~ 75 (120)
T 1mek_A 23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDA---------------------------TEESDLAQ 75 (120)
T ss_dssp HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEET---------------------------TTCCSSHH
T ss_pred cCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcC---------------------------CCCHHHHH
Confidence 6899999999999999999999999999998753 577777754 23457899
Q ss_pred HhCCCceeEEEEECCCCcEE--EEecCCCchhhHHHHHHHHH
Q 001380 530 ELGVNSWPTFAVVGPNGKLL--AQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i~--~~~~G~~~~~~l~~~l~~~l 569 (1089)
.|+|.++|+++++ ++|+++ ..+.|..+.+.+.++|++.+
T Consensus 76 ~~~v~~~Pt~~~~-~~g~~~~~~~~~g~~~~~~l~~~l~~~~ 116 (120)
T 1mek_A 76 QYGVRGYPTIKFF-RNGDTASPKEYTAGREADDIVNWLKKRT 116 (120)
T ss_dssp HHTCCSSSEEEEE-ESSCSSSCEECCCCSSHHHHHHHHHTTS
T ss_pred HCCCCcccEEEEE-eCCCcCCcccccCccCHHHHHHHHHhcc
Confidence 9999999999999 789877 78889888888888876543
|
| >3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0 | Back alignment and structure |
|---|
Probab=99.15 E-value=5.5e-11 Score=130.22 Aligned_cols=107 Identities=13% Similarity=0.089 Sum_probs=81.7
Q ss_pred eEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcC------CccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHH
Q 001380 183 KVAVASSADRIKVDANLAAAGLPVSMFDAIVSAD------AFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAK 256 (1089)
Q Consensus 183 ~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~------~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~ 256 (1089)
++.+. ...+....+.+.++.. |+.+.+.. ....+++|+..++.+++++|++++++++|||+.||+.|++
T Consensus 159 ki~~~--~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~ei~~~~~~K~~~l~~l~~~lgi~~~~~i~~GD~~NDi~m~~ 233 (274)
T 3fzq_A 159 KICLW--SNEKVFDEVKDILQDK---MELAQRDISSQYYEIIQKDFHKGKAIKRLQERLGVTQKETICFGDGQNDIVMFQ 233 (274)
T ss_dssp EEEEE--CCHHHHHHHHHHHGGG---EEEEEEEGGGTEEEEEETTCSHHHHHHHHHHHHTCCSTTEEEECCSGGGHHHHH
T ss_pred EEEEE--cCHHHHHHHHHHhhcc---eEEEeccCCCceEEEeeCCCCHHHHHHHHHHHcCCCHHHEEEECCChhHHHHHH
Confidence 44444 4556667777766542 55555543 3556899999999999999999999999999999999999
Q ss_pred HcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhcc
Q 001380 257 AAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTGG 298 (1089)
Q Consensus 257 ~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~~ 298 (1089)
.+| +.|.+|...+++++ .+++++.+..+-.+...|..+
T Consensus 234 ~ag---~~vam~na~~~~k~-~A~~v~~~~~edGv~~~l~~~ 271 (274)
T 3fzq_A 234 ASD---VTIAMKNSHQQLKD-IATSICEDIFDNGIYKELKRR 271 (274)
T ss_dssp TCS---EEEEETTSCHHHHH-HCSEEECCGGGTHHHHHHHHT
T ss_pred hcC---ceEEecCccHHHHH-hhhheeCCCchhHHHHHHHHh
Confidence 999 56666765666665 589999999887777776543
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=99.14 E-value=3.5e-09 Score=124.26 Aligned_cols=174 Identities=17% Similarity=0.310 Sum_probs=114.2
Q ss_pred cCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecC---CCEEEE
Q 001380 656 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPI---NEKVYI 732 (1089)
Q Consensus 656 f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~---g~~lyv 732 (1089)
+..|.+|+++++|+ |||++...++|++++..++..+++......-.. ......+.||+++|+ ++.|||
T Consensus 26 l~~P~~~a~~pdG~-l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~--------~~g~~Gllgia~~Pdf~~~g~lYv 96 (454)
T 1cru_A 26 LNKPHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTVFQVPEIVND--------ADGQNGLLGFAFHPDFKNNPYIYI 96 (454)
T ss_dssp CSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCC--------TTSSCSEEEEEECTTTTTSCEEEE
T ss_pred CCCceEEEEcCCCc-EEEEEcCCCEEEEEECCCCcEeEEecCCccccc--------cCCCCceeEEEECCCcCcCCEEEE
Confidence 66899999999998 999998878999999877777766532211000 001236789999996 679999
Q ss_pred EECC------------CcEEEEEECCCC--eE---EE-EeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCC-
Q 001380 733 AMAG------------QHQIWEHSTVDG--VT---RA-FSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSE- 793 (1089)
Q Consensus 733 ad~~------------~~~I~~~~~~~g--~~---~~-~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~- 793 (1089)
+... .++|++++...+ .+ +. +.+.. ......+.+|++++|| +|||+...
T Consensus 97 ~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p-----------~~~~H~~~~l~f~pDG-~Lyv~~Gd~ 164 (454)
T 1cru_A 97 SGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP-----------SSKDHQSGRLVIGPDQ-KIYYTIGDQ 164 (454)
T ss_dssp EEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC-----------CCSSCCEEEEEECTTS-CEEEEECCT
T ss_pred EEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCC-----------CCCCCCCCeEeECCCC-eEEEEECCC
Confidence 9864 468888876432 22 11 21110 0123468999999999 89998432
Q ss_pred -------------------------------CCeEEEEEcCCCCeEEEecCCCCC---CCCccccCCCCCccccccccCc
Q 001380 794 -------------------------------SSSIRALNLKTGGSRLLAGGDPIF---PDNLFKFGDRDGMGSEVLLQHP 839 (1089)
Q Consensus 794 -------------------------------~~~I~~~~~~~~~~~~~~g~~~~~---~~~l~~~g~~dg~~~~~~l~~P 839 (1089)
.++|.++++++. +..+.+.. ...+++.| +.+|
T Consensus 165 ~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~----ip~~Npf~~~~~~ei~a~G----------~RNp 230 (454)
T 1cru_A 165 GRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGS----IPKDNPSFNGVVSHIYTLG----------HRNP 230 (454)
T ss_dssp TTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSC----CCTTCCEETTEECSEEEBC----------CSEE
T ss_pred CCCCccccccccccccccccccccccCCCCCCeeEEEEeCCCC----CCCCCCCCCCCcceEEEEC----------CCCc
Confidence 367888887643 11111110 01223334 4589
Q ss_pred eEEEEccCCcEEEEeCCCC---EEEEEe
Q 001380 840 LGVYCAKNGQIYVADSYNH---KIKKLD 864 (1089)
Q Consensus 840 ~gva~~~~G~lyVaD~~n~---~I~~~d 864 (1089)
.|++++++|.||++|.+.. .|..+.
T Consensus 231 ~gla~dp~G~L~~~d~g~~~~dein~i~ 258 (454)
T 1cru_A 231 QGLAFTPNGKLLQSEQGPNSDDEINLIV 258 (454)
T ss_dssp EEEEECTTSCEEEEEECSSSCEEEEECC
T ss_pred ceEEECCCCCEEEEecCCCCCeEEEEec
Confidence 9999999999999997654 444443
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A | Back alignment and structure |
|---|
Probab=99.14 E-value=6.5e-11 Score=127.08 Aligned_cols=101 Identities=20% Similarity=0.355 Sum_probs=82.9
Q ss_pred CCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCC--EEEEEEeCCCCCChhcHHHHHHHHHHcCCcc
Q 001380 440 LNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMP--FTVVGVHSAKFDNEKDLEAIRNAVLRYGISH 517 (1089)
Q Consensus 440 ~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~--v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (1089)
+++..+.. ...+||++||+|||+||++|+.++|.|.++++++++.+ +.++.|.+
T Consensus 20 l~~~~~~~-~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~----------------------- 75 (241)
T 3idv_A 20 LNDANFDN-FVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDA----------------------- 75 (241)
T ss_dssp ECTTTHHH-HHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEET-----------------------
T ss_pred ecccCHHH-HHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEec-----------------------
Confidence 34554443 34478999999999999999999999999999997654 88888854
Q ss_pred ceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 518 PVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 518 ~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
|.+.++++.|+|.++|++++++ +|+.+ .+.|..+.+.+.+++...+.
T Consensus 76 ----~~~~~l~~~~~v~~~Pt~~~~~-~g~~~-~~~g~~~~~~l~~~i~~~~~ 122 (241)
T 3idv_A 76 ----TSASVLASRFDVSGYPTIKILK-KGQAV-DYEGSRTQEEIVAKVREVSQ 122 (241)
T ss_dssp ----TTCHHHHHHTTCCSSSEEEEEE-TTEEE-ECCSCSCHHHHHHHHHHHHS
T ss_pred ----cCCHHHHHhcCCCcCCEEEEEc-CCCcc-cccCcccHHHHHHHHhhccC
Confidence 4567899999999999999994 67776 58899899999888887654
|
| >3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A | Back alignment and structure |
|---|
Probab=99.13 E-value=2e-11 Score=119.88 Aligned_cols=97 Identities=14% Similarity=0.081 Sum_probs=72.5
Q ss_pred ccCCCEEEEEEecCCCcchhhhhhhHHHHHH--HcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhH
Q 001380 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEK--KYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNL 527 (1089)
Q Consensus 450 ~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~--~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l 527 (1089)
...||+|||+|||+||++|+.+.|.+.+..+ ++.+..+..|.|. +....+
T Consensus 41 ~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD----------------------------~e~~~~ 92 (151)
T 3ph9_A 41 QKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLM----------------------------HETTDK 92 (151)
T ss_dssp HHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEES----------------------------SCCSCG
T ss_pred HHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEec----------------------------CCchhh
Confidence 3468999999999999999999998876422 2222246666661 112234
Q ss_pred HHHhCCCceeEEEEECCCCcEEEEecCC-------CchhhHHHHHHHHHHHhcc
Q 001380 528 WRELGVNSWPTFAVVGPNGKLLAQLAGE-------GHRKDLDDLVEAALLFYGK 574 (1089)
Q Consensus 528 ~~~~~v~~~Pt~~lid~~G~i~~~~~G~-------~~~~~l~~~l~~~l~~~~~ 574 (1089)
+..|++.++||++++|++|+++.+..|. ...+++.++|+.+.+.+++
T Consensus 93 ~~~~~v~~~PT~~f~~~~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~~al~~ 146 (151)
T 3ph9_A 93 NLSPDGQYVPRIMFVDPSLTVRADIAGRYSNRLYTYEPRDLPLLIENMKKALRL 146 (151)
T ss_dssp GGCTTCCCSSEEEEECTTSCBCTTCCCSCTTSTTCCCGGGHHHHHHHHHHHHSC
T ss_pred HhhcCCCCCCEEEEECCCCCEEEEEeCCcCCcccccchhhHHHHHHHHHHHHHH
Confidence 6678999999999999999999999997 5567777777777666553
|
| >3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.13 E-value=6.2e-11 Score=118.86 Aligned_cols=110 Identities=15% Similarity=0.147 Sum_probs=72.0
Q ss_pred eeecccccCCCEEEEEEecCCCcchhhhhhh---HHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCcccee
Q 001380 444 PLQFRRDLKGKVVVLDFWTYCCINCMHVLPD---LEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVV 520 (1089)
Q Consensus 444 ~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~---l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 520 (1089)
.+.. ...+||+|||+|||+||++|+.+.|. ..++.+.+.+ ++++|.|.. ++.++....+.+
T Consensus 31 a~~~-A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~-~fv~ikVD~-----de~~~l~~~y~~--------- 94 (173)
T 3ira_A 31 AFEK-ARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNE-AFVSIKVDR-----EERPDIDNIYMT--------- 94 (173)
T ss_dssp HHHH-HHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHH-HCEEEEEET-----TTCHHHHHHHHH---------
T ss_pred HHHH-HHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHh-cCceeeeCC-----cccCcHHHHHHH---------
Confidence 3444 45579999999999999999997772 2344444433 478888843 333333222221
Q ss_pred ecCChhHHHHhCCCceeEEEEECCCCcEEEEec-----CCCchhhHHHHHHHHHHHhcc
Q 001380 521 NDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLA-----GEGHRKDLDDLVEAALLFYGK 574 (1089)
Q Consensus 521 ~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~-----G~~~~~~l~~~l~~~l~~~~~ 574 (1089)
.+...+|+.++|++++++++|++++... +......+.++|+.+.+.++.
T Consensus 95 -----~~q~~~gv~g~Pt~v~l~~dG~~v~~~ty~p~~~~~~~~~f~~~L~~v~~~~~~ 148 (173)
T 3ira_A 95 -----VCQIILGRGGWPLNIIMTPGKKPFFAGTYIPKNTRFNQIGMLELVPRIKEIWEQ 148 (173)
T ss_dssp -----HHHHHHSCCCSSEEEEECTTSCEEEEESSCCSSCBTTBCCHHHHHHHHHHHHHH
T ss_pred -----HHHHHcCCCCCcceeeECCCCCceeeeeeCCCCcCCCCCCHHHHHHHHHHHHHH
Confidence 1222359999999999999999998722 122445677777777665543
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-10 Score=129.46 Aligned_cols=100 Identities=15% Similarity=0.128 Sum_probs=87.4
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChH---hHHHHHHH--------CCCCCCCccEEEEcCCccCCCCCHHHHHHHHH
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRI---KVDANLAA--------AGLPVSMFDAIVSADAFENLKPAPDIFLSASK 233 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~---~~~~~l~~--------~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~ 233 (1089)
.++||+.++|+.|+++|++++|+||.... .+...++. +|+. |+.++++++. ..||+|+++..+++
T Consensus 188 ~~~~g~~e~L~~L~~~g~~~~v~T~k~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~-~~kp~p~~~~~~~~ 263 (301)
T 1ltq_A 188 VINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMTRKWVEDIAGVP---LVMQCQREQG-DTRKDDVVKEEIFW 263 (301)
T ss_dssp CBCHHHHHHHHHHHHTTCEEEEEECSCCCCSSSTTHHHHHHHHHHHHTTCCC---CSEEEECCTT-CCSCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHCCCeEEEEeCCCcccchhHHHHHHhcccccccccCCC---chheeeccCC-CCcHHHHHHHHHHH
Confidence 35899999999999999999999998643 34667777 8883 8999988765 46999999999999
Q ss_pred HcCCCCCc-EEEEcCChhhHHHHHHcCCeEEEEcCC
Q 001380 234 ILNVPTSE-CIVIEDALAGVQAAKAAQMRCIAVTTT 268 (1089)
Q Consensus 234 ~lgv~p~~-~v~VGD~~~Di~aA~~aG~~~i~V~~g 268 (1089)
+++..+.+ |+||||+..|+++|+++||.+++|.+|
T Consensus 264 ~~~~~~~~~~~~vgD~~~di~~a~~aG~~~~~v~~G 299 (301)
T 1ltq_A 264 KHIAPHFDVKLAIDDRTQVVEMWRRIGVECWQVASG 299 (301)
T ss_dssp HHTTTTCEEEEEEECCHHHHHHHHHTTCCEEECSCC
T ss_pred HHhccccceEEEeCCcHHHHHHHHHcCCeEEEecCC
Confidence 99887655 799999999999999999999999987
|
| >3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.5e-10 Score=125.77 Aligned_cols=111 Identities=8% Similarity=-0.006 Sum_probs=79.4
Q ss_pred hCCCeEEEEc-CCCh-HhHHHHHHHCCCCCCCccEEEEcCC----ccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhH
Q 001380 179 SKGLKVAVAS-SADR-IKVDANLAAAGLPVSMFDAIVSADA----FENLKPAPDIFLSASKILNVPTSECIVIEDALAGV 252 (1089)
Q Consensus 179 ~~Gi~vaIvS-n~~~-~~~~~~l~~~gl~~~~fd~i~~~~~----~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di 252 (1089)
+..+++.++. .... ...+.+.+.++- .+..+.+... ...+.+|+..++.+++++|++++++++|||+.||+
T Consensus 164 ~~~~ki~i~~~~~~~~~~~~~l~~~~~~---~~~~~~s~~~~~ei~~~~~~K~~~l~~l~~~lgi~~~e~ia~GD~~NDi 240 (283)
T 3dao_A 164 NDIIKFTVFHPDKCEELCTPVFIPAWNK---KAHLAAAGKEWVDCNAKGVSKWTALSYLIDRFDLLPDEVCCFGDNLNDI 240 (283)
T ss_dssp SCCCEEEEECSSCHHHHHTTTHHHHHTT---TEEEEEETTTEEEEEETTCCHHHHHHHHHHHTTCCGGGEEEEECSGGGH
T ss_pred cCceEEEEEcChHHHHHHHHHHHHHhcC---CEEEEEecCceEEEeeCCCcHHHHHHHHHHHhCCCHHHEEEECCCHHHH
Confidence 5568888883 3222 223344444442 3555555542 34567799999999999999999999999999999
Q ss_pred HHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHh
Q 001380 253 QAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILT 296 (1089)
Q Consensus 253 ~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~ 296 (1089)
+|++.+| +.|..+...+++++ .|++|+.+..+-.+..+|.
T Consensus 241 ~ml~~ag---~~vam~na~~~~k~-~A~~v~~s~~edGv~~~l~ 280 (283)
T 3dao_A 241 EMLQNAG---ISYAVSNARQEVIA-AAKHTCAPYWENGVLSVLK 280 (283)
T ss_dssp HHHHHSS---EEEEETTSCHHHHH-HSSEEECCGGGTHHHHHHH
T ss_pred HHHHhCC---CEEEcCCCCHHHHH-hcCeECCCCCCChHHHHHH
Confidence 9999999 44555655566655 5899999888866666654
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.11 E-value=8.8e-09 Score=115.93 Aligned_cols=168 Identities=17% Similarity=0.157 Sum_probs=116.0
Q ss_pred ceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcE
Q 001380 660 QGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQ 739 (1089)
Q Consensus 660 ~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~ 739 (1089)
.|+++.++++ +|++...++.|+++|+.++.+......+. ...|.+++++|+|+.+|++...+++
T Consensus 3 ~g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~~~~---------------~~~~~~~~~s~dg~~~~v~~~~~~~ 66 (349)
T 1jmx_B 3 TGPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCVMPD---------------KFGPGTAMMAPDNRTAYVLNNHYGD 66 (349)
T ss_dssp -CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEEEECSS---------------CCSSCEEEECTTSSEEEEEETTTTE
T ss_pred ccccccCCCE-EEEEeCCCCeEEEEECCCCcEEEEEecCC---------------CCCCceeEECCCCCEEEEEeCCCCc
Confidence 5677776555 99999999999999998887654432221 1258899999999899999999999
Q ss_pred EEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCC-----------CCeEEEEEcCCCCeE
Q 001380 740 IWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSE-----------SSSIRALNLKTGGSR 808 (1089)
Q Consensus 740 I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~-----------~~~I~~~~~~~~~~~ 808 (1089)
|+.+|..++........+.. + ...-..|.+++++++|+.||++... .+.|+.+++.++...
T Consensus 67 i~~~d~~t~~~~~~~~~~~~-------~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 138 (349)
T 1jmx_B 67 IYGIDLDTCKNTFHANLSSV-------P-GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 138 (349)
T ss_dssp EEEEETTTTEEEEEEESCCS-------T-TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred EEEEeCCCCcEEEEEEcccc-------c-ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence 99999998876533211100 0 0112358899999999999999854 578999998754321
Q ss_pred EEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEE
Q 001380 809 LLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTL 873 (1089)
Q Consensus 809 ~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~ 873 (1089)
.... .+.. -..+.+++++++|++|+++ +.|.++|..++.+...
T Consensus 139 ~~~~----------~~~~---------~~~~~~~~~s~dg~l~~~~---~~i~~~d~~~~~~~~~ 181 (349)
T 1jmx_B 139 KPVR----------TFPM---------PRQVYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVA 181 (349)
T ss_dssp CCSE----------EEEC---------CSSCCCEEECTTSCEEEES---SSEEEECTTTCCEEEE
T ss_pred ceee----------eccC---------CCcccceeECCCCcEEEcc---CcEEEEeCCCCceecc
Confidence 0000 0000 0146778899999988864 3499999987765543
|
| >3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0 | Back alignment and structure |
|---|
Probab=99.11 E-value=8e-12 Score=137.51 Aligned_cols=75 Identities=9% Similarity=0.078 Sum_probs=53.0
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhcc
Q 001380 220 NLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTGG 298 (1089)
Q Consensus 220 ~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~~ 298 (1089)
.+..|+..++.+++++|++++++++|||+.||++|++.+| +.|..+...+++++ .|++|+.+..+-.+...|...
T Consensus 194 ~~~~K~~~l~~l~~~lgi~~~~~i~~GD~~NDi~m~~~ag---~~vam~na~~~~k~-~A~~v~~~~~e~Gv~~~i~~~ 268 (279)
T 3mpo_A 194 RRASKGGTLSELVDQLGLTADDVMTLGDQGNDLTMIKYAG---LGVAMGNAIDEVKE-AAQAVTLTNAENGVAAAIRKY 268 (279)
T ss_dssp SSCCHHHHHHHHHHHTTCCGGGEEEC--CCTTHHHHHHST---EECBC---CCHHHH-HCSCBC------CHHHHHC--
T ss_pred CCCChHHHHHHHHHHcCCCHHHEEEECCchhhHHHHHhcC---ceeeccCCCHHHHH-hcceeccCCCccHHHHHHHHH
Confidence 3455899999999999999999999999999999999999 66777765666655 589999988888778777654
|
| >2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.6e-10 Score=112.02 Aligned_cols=72 Identities=22% Similarity=0.257 Sum_probs=61.3
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
+||+|||+||++||++|+.+.|.|.+++++|. ++.++.|.++ + . .+.|
T Consensus 29 ~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~--~v~~~~vd~~-----~----------------------~---~~~~ 76 (135)
T 2dbc_A 29 KDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP--ETKFVKAIVN-----S----------------------C---IEHY 76 (135)
T ss_dssp SSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS--SEEEEEECCS-----S----------------------S---CSSC
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHHHHCC--CcEEEEEEhh-----c----------------------C---cccC
Confidence 46899999999999999999999999999985 4888888542 1 0 1579
Q ss_pred CCCceeEEEEECCCCcEEEEecCCC
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEG 556 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~ 556 (1089)
+|.++||++++. +|+++.++.|..
T Consensus 77 ~i~~~Pt~~~~~-~G~~v~~~~G~~ 100 (135)
T 2dbc_A 77 HDNCLPTIFVYK-NGQIEGKFIGII 100 (135)
T ss_dssp CSSCCSEEEEES-SSSCSEEEESTT
T ss_pred CCCCCCEEEEEE-CCEEEEEEEeEE
Confidence 999999999995 999999988875
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.09 E-value=4.8e-09 Score=123.71 Aligned_cols=249 Identities=11% Similarity=0.086 Sum_probs=164.8
Q ss_pred EEEEeCCCCEEEEEe-CCCCEEEEEecCCC---CCC-----------------------CCC--CCCccccCCcceeEEe
Q 001380 615 LFISDSNHNRIVVTD-LDGNFIVQIGSSGE---EGL-----------------------RDG--SFDDATFNRPQGLAYN 665 (1089)
Q Consensus 615 L~vsd~~~~~I~~~~-~~g~~~~~i~~~g~---~g~-----------------------~dG--~~~~~~f~~P~gla~d 665 (1089)
.|+|...++.+.++- ++++.+.+|+-... .|+ .+| .+..+- .|+ ++++
T Consensus 17 ~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd--~hh-~~~s 93 (595)
T 1fwx_A 17 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGD--LHH-VHMS 93 (595)
T ss_dssp EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCC--BCC-EEEE
T ss_pred EEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCC--CCc-cccC
Confidence 445555567777774 57888888766421 222 012 121122 233 6666
Q ss_pred e-----CCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEE-e-cCCCEEEEEE----
Q 001380 666 A-----KKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCY-K-PINEKVYIAM---- 734 (1089)
Q Consensus 666 ~-----~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~-~-~~g~~lyvad---- 734 (1089)
. +|+++||+|..+++|.+||+++.++..+..... -..|+++++ + |+++++|++.
T Consensus 94 ~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~---------------g~~phg~~~~~~p~~~~v~~~~~~~~ 158 (595)
T 1fwx_A 94 FTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPN---------------AKGIHGLRPQKWPRSNYVFCNGEDET 158 (595)
T ss_dssp EETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSS---------------CCSEEEEEECCSSBCSEEEEEECSCE
T ss_pred CCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCC---------------CCCCcceeeeecCCCcEEEEeccccc
Confidence 6 789999999999999999999987655432110 126999998 5 8999999995
Q ss_pred -------------CCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCC------
Q 001380 735 -------------AGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESS------ 795 (1089)
Q Consensus 735 -------------~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~------ 795 (1089)
...+.+..+|.++.++..-...+ .+|.+++++++|+++|++...+.
T Consensus 159 p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vg---------------g~pd~~~~spdGk~~~vt~~~se~~~~i~ 223 (595)
T 1fwx_A 159 PLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVS---------------GNLDNCDADYEGKWAFSTSYNSEKGMTLP 223 (595)
T ss_dssp ESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEES---------------SCCCCEEECSSSSEEEEEESCTTCCSSHH
T ss_pred ccCCCCcccccccccCceEEEEECCCCeEEEEEEeC---------------CCccceEECCCCCEEEEEecCcccCcchh
Confidence 33457888998887654332111 16899999999999999998773
Q ss_pred --------eEEEEEcCC-------------CCeEEEecCCCCCCCCccccCCCCCcc---ccccccCceEEEEccCCc-E
Q 001380 796 --------SIRALNLKT-------------GGSRLLAGGDPIFPDNLFKFGDRDGMG---SEVLLQHPLGVYCAKNGQ-I 850 (1089)
Q Consensus 796 --------~I~~~~~~~-------------~~~~~~~g~~~~~~~~l~~~g~~dg~~---~~~~l~~P~gva~~~~G~-l 850 (1089)
.|.+++... +.+.++-+.. ..+.. .-.--..|.|+.++|||+ +
T Consensus 224 ~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~------------~~~~~~~~~Ipvg~~PhGv~~sPDGk~v 291 (595)
T 1fwx_A 224 EMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRK------------EASSLFTRYIPIANNPHGCNMAPDKKHL 291 (595)
T ss_dssp HHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSG------------GGCCSSEEEEEEESSCCCEEECTTSSEE
T ss_pred hccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcc------------cCCceeEEEEecCCCceEEEEcCCCCEE
Confidence 344444221 1122221100 00000 000114799999999995 9
Q ss_pred EEEeCCCCEEEEEeCCCCe------------EEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEE
Q 001380 851 YVADSYNHKIKKLDPASNR------------VSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYL 918 (1089)
Q Consensus 851 yVaD~~n~~I~~~d~~~~~------------v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~ 918 (1089)
||++...++|.+||.++.. +..-...| ..|.+++++++|++|++...++.|.++
T Consensus 292 ~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG--------------~gP~h~aF~~dG~aY~t~~ldsqV~kw 357 (595)
T 1fwx_A 292 CVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG--------------LGPLHTAFDGRGNAYTSLFLDSQVVKW 357 (595)
T ss_dssp EEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC--------------SCEEEEEECTTSEEEEEETTTTEEEEE
T ss_pred EEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC--------------CCcceEEECCCCeEEEEEecCCcEEEE
Confidence 9999999999999987542 11111111 349999999999999999999999999
Q ss_pred eCCC
Q 001380 919 DLNK 922 (1089)
Q Consensus 919 ~~~~ 922 (1089)
+.+.
T Consensus 358 di~~ 361 (595)
T 1fwx_A 358 NIED 361 (595)
T ss_dssp EHHH
T ss_pred EhhH
Confidence 9876
|
| >2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.68 E-value=9.7e-12 Score=114.56 Aligned_cols=88 Identities=30% Similarity=0.550 Sum_probs=75.7
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+|++||.||++||++|+.+.|.++++.+++++ ++.++.|++ |.+.++++.|
T Consensus 18 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~---------------------------~~~~~~~~~~ 69 (106)
T 2yj7_A 18 SDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEG-KVKVVKVNV---------------------------DENPNTAAQY 69 (106)
Confidence 578999999999999999999999999999875 477777743 3345788999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
++.++|+++++ ++|+++.++.|..+.+.+.++|+++
T Consensus 70 ~v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~ 105 (106)
T 2yj7_A 70 GIRSIPTLLLF-KNGQVVDRLVGAQPKEALKERIDKH 105 (106)
Confidence 99999999999 8999999999988888888887654
|
| >2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A | Back alignment and structure |
|---|
Probab=99.08 E-value=7.7e-11 Score=114.96 Aligned_cols=87 Identities=16% Similarity=0.127 Sum_probs=67.3
Q ss_pred CEEEEEEecCC--CcchhhhhhhHHHHHHHcCCCCEE--EEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 454 KVVVLDFWTYC--CINCMHVLPDLEFLEKKYKDMPFT--VVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 454 k~vll~Fwa~w--C~~C~~~~p~l~~l~~~~~~~~v~--vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
+.+||+||++| |++|+.+.|.|.+++++| + ++. ++.|.+ |.+.++++
T Consensus 35 ~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~-~v~~~~~~Vd~---------------------------d~~~~la~ 85 (142)
T 2es7_A 35 GDGVILLSSDPRRTPEVSDNPVMIAELLREF-P-QFDWQVAVADL---------------------------EQSEAIGD 85 (142)
T ss_dssp CSEEEEECCCSCC----CCHHHHHHHHHHTC-T-TSCCEEEEECH---------------------------HHHHHHHH
T ss_pred CCEEEEEECCCCCCccHHHHHHHHHHHHHHh-c-ccceeEEEEEC---------------------------CCCHHHHH
Confidence 45788999887 999999999999999999 4 466 888843 33457999
Q ss_pred HhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 530 ELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
+|+|.++||++++ ++|+++.++.|..+.+.+.++|++.++
T Consensus 86 ~~~V~~iPT~~~f-k~G~~v~~~~G~~~~~~l~~~i~~~l~ 125 (142)
T 2es7_A 86 RFNVRRFPATLVF-TDGKLRGALSGIHPWAELLTLMRSIVD 125 (142)
T ss_dssp TTTCCSSSEEEEE-SCC----CEESCCCHHHHHHHHHHHHC
T ss_pred hcCCCcCCeEEEE-eCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 9999999999999 999999999999888999999988775
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=4.3e-08 Score=110.37 Aligned_cols=262 Identities=13% Similarity=0.129 Sum_probs=171.1
Q ss_pred CCCceEEEeecCCeEEEEeCCC-----CEEEEEeCC---------CCEEEEEecCCCCCCCCCCCCccccCCcceeEEee
Q 001380 601 KFPGKLAIDILNNRLFISDSNH-----NRIVVTDLD---------GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNA 666 (1089)
Q Consensus 601 ~~P~~vavd~~~g~L~vsd~~~-----~~I~~~~~~---------g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~ 666 (1089)
..|.||++|..+|++||+-..- -++.+++.+ +..+..+... + ....|.+.+++.+|+
T Consensus 26 ~~P~gv~vd~~~gRiFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~p~ll~PYP~w-------~--~~~~lvsV~~v~iD~ 96 (381)
T 3q6k_A 26 MISTAFAYDAEGEKLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSGH-------K--TGKELTSIYQPVIDD 96 (381)
T ss_dssp CCCCEEEEETTTTEEEEECCTTSTTCSCSEEEEEHHHHTTCTTCSSCCBEECTTC-------S--SSCSSSCEEEEEECT
T ss_pred cceeeeeeecCCCcEEEEeCCCCCCCCcEEEEEeCCCCcccccCCcccccCCCCC-------c--cccceEEeeEEEEcC
Confidence 4689999963489999996531 245555432 1221332221 0 123588999999998
Q ss_pred CCCEEEEEECCC---------------CEEEEEECCCC--e-EEEEecCCCCCCCCCCCCcccccccCCceeEEEe---c
Q 001380 667 KKNLLYVADTEN---------------HALREIDFVND--T-VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYK---P 725 (1089)
Q Consensus 667 ~g~~lyVaD~~n---------------~~I~~~d~~~g--~-v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~---~ 725 (1089)
.|. |||.|++. -+|..||+.++ + ++++. ..... ...-+...+|++| +
T Consensus 97 ~~r-LWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~-~p~~~----------~~~~S~l~di~VD~~~~ 164 (381)
T 3q6k_A 97 CRR-LWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYY-FPTRL----------VEKPTYFGGFAVDVANP 164 (381)
T ss_dssp TCE-EEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEE-CCGGG----------CCCGGGEEEEEEEESCT
T ss_pred CCc-EEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEE-CCHHh----------cccCCccceEEEecccC
Confidence 776 99999872 17899999987 4 44443 11100 0012467899999 2
Q ss_pred C----CCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCC-Ccc---ccCCceEEEcCC----CCEEEEEeCC
Q 001380 726 I----NEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSL-NTS---FAQPSGISLSPD----FMEIYVADSE 793 (1089)
Q Consensus 726 ~----g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~-~~~---~~~P~glav~~~----g~~lyvad~~ 793 (1089)
. ++.+||+|.+...|.+||..++...++..........+.... ... ...-.|||++++ ++.||+.-..
T Consensus 165 ~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~pls 244 (381)
T 3q6k_A 165 KGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGS 244 (381)
T ss_dssp TTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESS
T ss_pred CCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECC
Confidence 2 469999999999999999999988777632111100000000 011 135679999998 7899999998
Q ss_pred CCeEEEEEcC---CCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEc-cCCcEEEEeCCCCEEEEEeCCC--
Q 001380 794 SSSIRALNLK---TGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCA-KNGQIYVADSYNHKIKKLDPAS-- 867 (1089)
Q Consensus 794 ~~~I~~~~~~---~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~-~~G~lyVaD~~n~~I~~~d~~~-- 867 (1089)
+.+++++..+ .... ...+-..|.+. . .....+.++| .+|.||+++..++.|..+++++
T Consensus 245 s~~ly~V~T~~L~~~~~----------~~~v~~~G~kg-~-----~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~ 308 (381)
T 3q6k_A 245 AIKVYSVNTKELKQKGG----------KLNPELLGNRG-K-----YNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMP 308 (381)
T ss_dssp CSEEEEEEHHHHSSTTC----------CCCCEEEEECC-T-----TCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCS
T ss_pred CCcEEEEEHHHhhCcch----------hhceEEeeecC-C-----CCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCc
Confidence 8899999732 1110 01111223221 0 1234567887 7899999999999999999987
Q ss_pred ---CeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECC
Q 001380 868 ---NRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTN 911 (1089)
Q Consensus 868 ---~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~ 911 (1089)
+...+++-. ..|..|.++.++.+|.|||....
T Consensus 309 ~~~~n~~~l~~d------------~~l~~pd~~~i~~~g~Lwv~sn~ 343 (381)
T 3q6k_A 309 LRMKNTDVVYTS------------SRFVFGTDISVDSKGGLWFMSNG 343 (381)
T ss_dssp BCGGGEEEEEEC------------TTCCSEEEEEECTTSCEEEEECS
T ss_pred cccCceEEEEEC------------CCccccCeEEECCCCeEEEEECc
Confidence 345666532 26899999999999999998743
|
| >1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.1e-11 Score=117.17 Aligned_cols=89 Identities=24% Similarity=0.395 Sum_probs=76.4
Q ss_pred cCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHH
Q 001380 451 LKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRE 530 (1089)
Q Consensus 451 ~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~ 530 (1089)
.++|++||+||++||++|+.+.|.|.++.++++ ++.++.|++ |.+.++++.
T Consensus 34 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~---------------------------~~~~~~~~~ 84 (130)
T 1wmj_A 34 EAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP--GAVFLKVDV---------------------------DELKEVAEK 84 (130)
T ss_dssp TTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT--TBCCEECCT---------------------------TTSGGGHHH
T ss_pred hcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC--CCEEEEEec---------------------------cchHHHHHH
Confidence 368999999999999999999999999999987 577888854 445689999
Q ss_pred hCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 531 LGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 531 ~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
|+|.++|+++++ ++|+++.++.| .+.+.+.++|+++++
T Consensus 85 ~~v~~~Pt~~~~-~~g~~~~~~~g-~~~~~l~~~l~~~~~ 122 (130)
T 1wmj_A 85 YNVEAMPTFLFI-KDGAEADKVVG-ARKDDLQNTIVKHVG 122 (130)
T ss_dssp HTCCSSCCCCBC-TTTTCCBCCCT-TCTTTHHHHHHHHTS
T ss_pred cCCCccceEEEE-eCCeEEEEEeC-CCHHHHHHHHHHHHh
Confidence 999999998777 89999988888 477888888887664
|
| >3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.7e-10 Score=108.46 Aligned_cols=71 Identities=21% Similarity=0.303 Sum_probs=61.0
Q ss_pred CCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhC
Q 001380 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELG 532 (1089)
Q Consensus 453 gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~ 532 (1089)
+++|||+|||+||++|+.+.|.|.+|+++|++ +.++-|.+ |. .++.|+
T Consensus 23 ~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~~--v~f~kvd~---------------------------d~---~~~~~~ 70 (118)
T 3evi_A 23 DVWVIIHLYRSSIPMCLLVNQHLSLLARKFPE--TKFVKAIV---------------------------NS---CIQHYH 70 (118)
T ss_dssp TCEEEEEEECTTSHHHHHHHHHHHHHHHHCTT--SEEEEEEG---------------------------GG---TSTTCC
T ss_pred CCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC--CEEEEEEh---------------------------HH---hHHHCC
Confidence 45999999999999999999999999999974 77888843 11 147899
Q ss_pred CCceeEEEEECCCCcEEEEecCCC
Q 001380 533 VNSWPTFAVVGPNGKLLAQLAGEG 556 (1089)
Q Consensus 533 v~~~Pt~~lid~~G~i~~~~~G~~ 556 (1089)
|.++||++++ ++|+.+.++.|..
T Consensus 71 v~~~PT~~~f-k~G~~v~~~~G~~ 93 (118)
T 3evi_A 71 DNCLPTIFVY-KNGQIEAKFIGII 93 (118)
T ss_dssp GGGCSEEEEE-ETTEEEEEEESTT
T ss_pred CCCCCEEEEE-ECCEEEEEEeChh
Confidence 9999999999 8999999988864
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.06 E-value=6.3e-08 Score=117.51 Aligned_cols=241 Identities=17% Similarity=0.258 Sum_probs=174.5
Q ss_pred CceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEE
Q 001380 603 PGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALR 682 (1089)
Q Consensus 603 P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~ 682 (1089)
..++++++ ++.++++-...+.|..++.++..+..+... -....+++++|+|+.|..+ ..++.|+
T Consensus 306 v~~~~~~~-~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~--------------~~~v~~~~~s~~g~~l~~~-~~dg~v~ 369 (577)
T 2ymu_A 306 VWGVAFSP-DGQTIASASDDKTVKLWNRNGQHLQTLTGH--------------SSSVWGVAFSPDGQTIASA-SDDKTVK 369 (577)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTSCEEEEECCC--------------SSCEEEEEECTTSSEEEEE-ETTSEEE
T ss_pred eEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeeEEEeCC--------------CCCEEEEEECCCCCEEEEE-eCCCEEE
Confidence 45688887 666777767778999999998877665433 1246789999999955554 4578899
Q ss_pred EEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccC
Q 001380 683 EIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNL 762 (1089)
Q Consensus 683 ~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~ 762 (1089)
.++.++..+.++.+.. ....+++++|++..|..+ ...+.|..||..+..+..+.+..
T Consensus 370 ~~~~~~~~~~~~~~~~-----------------~~v~~~~~s~dg~~l~~~-~~d~~v~~~~~~~~~~~~~~~~~----- 426 (577)
T 2ymu_A 370 LWNRNGQLLQTLTGHS-----------------SSVRGVAFSPDGQTIASA-SDDKTVKLWNRNGQLLQTLTGHS----- 426 (577)
T ss_dssp EEETTCCEEEEEECCS-----------------SCEEEEEECTTSSCEEEE-ETTSEEEEECTTCCEEEEEECCS-----
T ss_pred EEcCCCCEEEEecCCC-----------------CCeEEEEECCCCCEEEEE-eCCCEEEEEeCCCCEEEEecCCC-----
Confidence 9998877777775422 246789999998655444 45678888987666666665422
Q ss_pred CCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEE
Q 001380 763 NGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGV 842 (1089)
Q Consensus 763 ~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gv 842 (1089)
....+++++|+++. +++-+..+.|+.++.++.....+.+.. ....++
T Consensus 427 ----------~~v~~~~~s~d~~~-l~~~~~d~~v~~w~~~~~~~~~~~~~~----------------------~~v~~~ 473 (577)
T 2ymu_A 427 ----------SSVWGVAFSPDDQT-IASASDDKTVKLWNRNGQLLQTLTGHS----------------------SSVRGV 473 (577)
T ss_dssp ----------SCEEEEEECTTSSE-EEEEETTSEEEEEETTSCEEEEEECCS----------------------SCEEEE
T ss_pred ----------CCeEEEEECCCCCE-EEEEcCCCEEEEEECCCCEEEEEcCCC----------------------CCEEEE
Confidence 12458999999854 455556789999998755444443311 135689
Q ss_pred EEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCC
Q 001380 843 YCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNK 922 (1089)
Q Consensus 843 a~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~ 922 (1089)
+++++|+++++-..++.|+.+|..+..+.++.+. -.....|++.++|+++++-..++.|+.++..+
T Consensus 474 ~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h--------------~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~ 539 (577)
T 2ymu_A 474 AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH--------------SSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 539 (577)
T ss_dssp EECTTSCEEEEEETTSEEEEEETTSCEEEEEECC--------------SSCEEEEEECTTSSCEEEEETTSEEEEECTTS
T ss_pred EEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCC--------------CCCEEEEEEcCCCCEEEEEECcCEEEEEeCCC
Confidence 9999999888888889999999888777777653 23467899999998777777789999999876
Q ss_pred CCceEEEEe
Q 001380 923 EEPELQTLE 931 (1089)
Q Consensus 923 ~~~~~~~l~ 931 (1089)
+ .+.++.
T Consensus 540 ~--~~~~~~ 546 (577)
T 2ymu_A 540 Q--LLQTLT 546 (577)
T ss_dssp C--EEEEEE
T ss_pred C--EEEEEc
Confidence 5 555554
|
| >1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A | Back alignment and structure |
|---|
Probab=99.04 E-value=5e-10 Score=118.93 Aligned_cols=90 Identities=17% Similarity=0.083 Sum_probs=77.0
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCC---CCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD---MPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLW 528 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~---~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~ 528 (1089)
.+++++|+||++||++|+.+.|.++++++++++ .++.++.|.+ |.+.+++
T Consensus 133 ~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~---------------------------~~~~~l~ 185 (226)
T 1a8l_A 133 DQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEA---------------------------IEYPEWA 185 (226)
T ss_dssp CSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEG---------------------------GGCHHHH
T ss_pred CCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEc---------------------------ccCHHHH
Confidence 456669999999999999999999999999872 3688888854 3456789
Q ss_pred HHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 529 RELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 529 ~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
+.|+|.++|+++++ ++|+.+.++.|....+.+.++|++.+
T Consensus 186 ~~~~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l 225 (226)
T 1a8l_A 186 DQYNVMAVPKIVIQ-VNGEDRVEFEGAYPEKMFLEKLLSAL 225 (226)
T ss_dssp HHTTCCSSCEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred HhCCCcccCeEEEE-eCCceeEEEcCCCCHHHHHHHHHHhh
Confidence 99999999998877 79999999999999888988887765
|
| >3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.9e-11 Score=112.83 Aligned_cols=87 Identities=15% Similarity=0.197 Sum_probs=64.9
Q ss_pred eeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecC
Q 001380 444 PLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDG 523 (1089)
Q Consensus 444 ~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~ 523 (1089)
.+++ ++..+|++||+|||+||++|+.+.|.|.+++++++ .|.+.. ++. .+.
T Consensus 4 ~~~l-a~~~~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~-----~v~~~~-----~~~------------------~~~ 54 (106)
T 3kp8_A 4 AVGL-AAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVP-----YVECSP-----NGP------------------GTP 54 (106)
T ss_dssp HHHH-HHHHHHHTCEEEECTTCHHHHHHHHHHGGGGGGSC-----EEESCT-----TCT------------------TSC
T ss_pred hhHH-HHhcCCCEEEEEECCCCHHHHHHHHHHHHHHHhCC-----EEEEec-----ccc------------------cch
Confidence 3455 66778999999999999999999999999987764 343321 000 024
Q ss_pred ChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHH
Q 001380 524 DMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLV 565 (1089)
Q Consensus 524 ~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l 565 (1089)
+.++++.|+|.++||+++ +|+. +.|..+.+.+.+++
T Consensus 55 ~~~l~~~~~V~~~PT~~i---~G~~---~~G~~~~~~l~~~~ 90 (106)
T 3kp8_A 55 QAQECTEAGITSYPTWII---NGRT---YTGVRSLEALAVAS 90 (106)
T ss_dssp CCHHHHHTTCCSSSEEEE---TTEE---EESCCCHHHHHHHH
T ss_pred hHHHHHHcCCeEeCEEEE---CCEE---ecCCCCHHHHHHHh
Confidence 678999999999999766 7764 67888877766654
|
| >1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=5e-10 Score=96.63 Aligned_cols=74 Identities=18% Similarity=0.341 Sum_probs=61.6
Q ss_pred EEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhCCCc
Q 001380 456 VVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNS 535 (1089)
Q Consensus 456 vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~ 535 (1089)
..|+||++||++|+.+.|.++++.++++. ++.++.| | +.+++++|+|.+
T Consensus 2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~-~~~~~~v-----------------------------~-~~~~~~~~~v~~ 50 (77)
T 1ilo_A 2 MKIQIYGTGCANCQMLEKNAREAVKELGI-DAEFEKI-----------------------------K-EMDQILEAGLTA 50 (77)
T ss_dssp EEEEEECSSSSTTHHHHHHHHHHHHHTTC-CEEEEEE-----------------------------C-SHHHHHHHTCSS
T ss_pred cEEEEEcCCChhHHHHHHHHHHHHHHcCC-ceEEEEe-----------------------------c-CHHHHHHCCCCc
Confidence 35899999999999999999999999875 4888887 2 457899999999
Q ss_pred eeEEEEECCCCcEEEEecCCC-chhhHHHHH
Q 001380 536 WPTFAVVGPNGKLLAQLAGEG-HRKDLDDLV 565 (1089)
Q Consensus 536 ~Pt~~lid~~G~i~~~~~G~~-~~~~l~~~l 565 (1089)
+|++++ +|+++.+ |.. +.+++.++|
T Consensus 51 ~Pt~~~---~G~~~~~--G~~~~~~~l~~~l 76 (77)
T 1ilo_A 51 LPGLAV---DGELKIM--GRVASKEEIKKIL 76 (77)
T ss_dssp SSCEEE---TTEEEEC--SSCCCHHHHHHHC
T ss_pred CCEEEE---CCEEEEc--CCCCCHHHHHHHh
Confidence 999988 8988766 775 677776553
|
| >2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.3e-10 Score=126.23 Aligned_cols=206 Identities=13% Similarity=0.174 Sum_probs=116.9
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHH---cCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAE---MGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIY 154 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (1089)
++|+|+||+||||+++...+.....+++++ .|+.+.. ..|++.......+. ..+.... . .....+....
T Consensus 2 ~~kli~~DlDGTLl~~~~~i~~~~~~al~~l~~~G~~~~~-----aTGR~~~~~~~~~~-~l~~~~~-i-~~nGa~i~~~ 73 (258)
T 2pq0_A 2 GRKIVFFDIDGTLLDEQKQLPLSTIEAVRRLKQSGVYVAI-----ATGRAPFMFEHVRK-QLGIDSF-V-SFNGQYVVFE 73 (258)
T ss_dssp CCCEEEECTBTTTBCTTSCCCHHHHHHHHHHHHTTCEEEE-----ECSSCGGGSHHHHH-HHTCCCE-E-EGGGTEEEET
T ss_pred CceEEEEeCCCCCcCCCCccCHHHHHHHHHHHHCCCEEEE-----ECCCChHHHHHHHH-hcCCCEE-E-ECCCCEEEEC
Confidence 468999999999999876555555444444 4654221 22333222221111 1111100 0 0000000000
Q ss_pred HHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCC-h------HhHHHHHHHCCCC-----------CCCccEEEEcC
Q 001380 155 LDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSAD-R------IKVDANLAAAGLP-----------VSMFDAIVSAD 216 (1089)
Q Consensus 155 ~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~-~------~~~~~~l~~~gl~-----------~~~fd~i~~~~ 216 (1089)
.+.+.. .....+.+.++++.+++.|+.+.+.++.. . ......+...+.. ...++.++..+
T Consensus 74 ~~~i~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 151 (258)
T 2pq0_A 74 GNVLYK--QPLRREKVRALTEEAHKNGHPLVFMDAEKMRASIGDHPHIHVSMASLKFAHPPVDPLYYENKDIYQALLFCR 151 (258)
T ss_dssp TEEEEE--CCCCHHHHHHHHHHHHHTTCCEEEECSSCEEESSSSCHHHHHHHHHTTCCCCCBCTTGGGGSCCCEEEECSC
T ss_pred CEEEEE--ecCCHHHHHHHHHHHHhCCCeEEEEeCCcEEEecCCcHHHHHHHHhhcCCccccccchhhccCceEEEEECC
Confidence 000000 11345778888888888888888776543 0 1122233333211 01223333222
Q ss_pred -------------------------CccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCH
Q 001380 217 -------------------------AFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSE 271 (1089)
Q Consensus 217 -------------------------~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~ 271 (1089)
-...+-.|...++.+++++|+++++|++|||+.||+.|++.+|+..+ .+...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~K~~~l~~l~~~lgi~~~~~ia~GDs~NDi~ml~~ag~~va---m~na~ 228 (258)
T 2pq0_A 152 AEEEEPYVRNYPEFRFVRWHDVSTDVLPAGGSKAEGIRMMIEKLGIDKKDVYAFGDGLNDIEMLSFVGTGVA---MGNAH 228 (258)
T ss_dssp HHHHHHHHHHCTTEEEEEEETTEEEEEESSCCHHHHHHHHHHHHTCCGGGEEEECCSGGGHHHHHHSSEEEE---ETTCC
T ss_pred HHHHHHHHHhCCCeEEEEeCCceEEEEECCCChHHHHHHHHHHhCCCHHHEEEECCcHHhHHHHHhCCcEEE---eCCCc
Confidence 11234566788999999999999999999999999999999996433 35555
Q ss_pred HHHhhcCCcEEecCcccCCHHHHHhc
Q 001380 272 ERLKEASPSLIRKEIGSVSLNDILTG 297 (1089)
Q Consensus 272 ~~l~~~~~d~vi~dl~el~i~~ll~~ 297 (1089)
+++++ .+++|+.+..+-.+...|..
T Consensus 229 ~~~k~-~A~~v~~~~~~dGva~~i~~ 253 (258)
T 2pq0_A 229 EEVKR-VADFVTKPVDKEGIWYGLKQ 253 (258)
T ss_dssp HHHHH-TCSEEECCGGGTHHHHHHHH
T ss_pred HHHHH-hCCEEeCCCCcchHHHHHHH
Confidence 66665 59999999888767776654
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.03 E-value=5.6e-08 Score=113.21 Aligned_cols=224 Identities=16% Similarity=0.196 Sum_probs=154.2
Q ss_pred CEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC--CCEEEEEECCCCeEEEEecCCCC
Q 001380 623 NRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE--NHALREIDFVNDTVRTLAGNGTK 700 (1089)
Q Consensus 623 ~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~--n~~I~~~d~~~g~v~~~ag~g~~ 700 (1089)
++|.++|.+|.....+... . .....++++|+|+.|+.+... +..|+.+|+.++....+.+..
T Consensus 159 ~~i~i~d~~g~~~~~l~~~-~-------------~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~-- 222 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRS-P-------------QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP-- 222 (415)
T ss_dssp EEEEEEETTSCSCEEEEEE-S-------------SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCS--
T ss_pred ceEEEEcCCCCCCEEEeCC-C-------------CcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCC--
Confidence 6888888887655544332 1 145789999999977777654 369999999998887775321
Q ss_pred CCCCCCCCcccccccCCceeEEEecCCCEEEEEEC--CCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceE
Q 001380 701 GSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA--GQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGI 778 (1089)
Q Consensus 701 ~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~--~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~gl 778 (1089)
.....++|+|+|..|+++.. ++..|+.+|..++.+..+.+.. .....+
T Consensus 223 ---------------~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~---------------~~~~~~ 272 (415)
T 2hqs_A 223 ---------------RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR---------------SNNTEP 272 (415)
T ss_dssp ---------------SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCS---------------SCEEEE
T ss_pred ---------------CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCC---------------Ccccce
Confidence 14578999999988887654 3567999999988876654321 134678
Q ss_pred EEcCCCCEEEEEeCCC--CeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEEEeC
Q 001380 779 SLSPDFMEIYVADSES--SSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADS 855 (1089)
Q Consensus 779 av~~~g~~lyvad~~~--~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~ 855 (1089)
+++|+|+.|+++.... .+|+.++..++....+... -.....++++++|+ |+++..
T Consensus 273 ~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~----------------------~~~~~~~~~spdG~~l~~~~~ 330 (415)
T 2hqs_A 273 TWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWE----------------------GSQNQDADVSSDGKFMVMVSS 330 (415)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCS----------------------SSEEEEEEECTTSSEEEEEEE
T ss_pred EECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecC----------------------CCcccCeEECCCCCEEEEEEC
Confidence 9999998787776433 3788889887665433211 01245789999996 555544
Q ss_pred C--CCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEEEECCCC--EEEEEeCCCCCceEEEE
Q 001380 856 Y--NHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADTNNN--IIRYLDLNKEEPELQTL 930 (1089)
Q Consensus 856 ~--n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~~n~--~I~~~~~~~~~~~~~~l 930 (1089)
. ...|+.+|..++.+..+... .....+++.++|+ |+++...++ .|..++++++ ....+
T Consensus 331 ~~g~~~i~~~d~~~~~~~~l~~~---------------~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~--~~~~l 393 (415)
T 2hqs_A 331 NGGQQHIAKQDLATGGVQVLSST---------------FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR--FKARL 393 (415)
T ss_dssp CSSCEEEEEEETTTCCEEECCCS---------------SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC--CEEEC
T ss_pred cCCceEEEEEECCCCCEEEecCC---------------CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC--cEEEe
Confidence 3 46899999998888765431 1467788999987 555544333 7889998876 34444
Q ss_pred e
Q 001380 931 E 931 (1089)
Q Consensus 931 ~ 931 (1089)
.
T Consensus 394 ~ 394 (415)
T 2hqs_A 394 P 394 (415)
T ss_dssp C
T ss_pred e
Confidence 3
|
| >3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=6e-10 Score=119.88 Aligned_cols=95 Identities=17% Similarity=0.335 Sum_probs=78.0
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCC--CCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD--MPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~--~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
.+|++||+|||+||++|+.+.|.+.++++++++ .++.++.|+++. |.+.++++
T Consensus 29 ~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~-------------------------~~~~~l~~ 83 (244)
T 3q6o_A 29 SRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAE-------------------------ETNSAVCR 83 (244)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTS-------------------------TTTHHHHH
T ss_pred CCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCc-------------------------hhhHHHHH
Confidence 459999999999999999999999999999986 469999996521 34678999
Q ss_pred HhCCCceeEEEEECCC-----CcEEEEecCCCchhhHHHHHHHHHHHhc
Q 001380 530 ELGVNSWPTFAVVGPN-----GKLLAQLAGEGHRKDLDDLVEAALLFYG 573 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~-----G~i~~~~~G~~~~~~l~~~l~~~l~~~~ 573 (1089)
.|+|.++|+++++++. |+.+ .+.| .+.+.+.++|...+....
T Consensus 84 ~~~v~~~Pt~~~~~~g~~~~~g~~~-~~~g-~~~~~l~~~i~~~l~~~~ 130 (244)
T 3q6o_A 84 DFNIPGFPTVRFFXAFTXNGSGAVF-PVAG-ADVQTLRERLIDALESHH 130 (244)
T ss_dssp HTTCCSSSEEEEECTTCCSSSCEEC-CCTT-CCHHHHHHHHHHHHHTCT
T ss_pred HcCCCccCEEEEEeCCCcCCCCeeE-ecCC-CCHHHHHHHHHHHHHhcc
Confidence 9999999999999863 4444 4555 588889999988887543
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-07 Score=115.14 Aligned_cols=241 Identities=17% Similarity=0.285 Sum_probs=175.2
Q ss_pred CceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEE
Q 001380 603 PGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALR 682 (1089)
Q Consensus 603 P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~ 682 (1089)
...+++.+ +++.+++-...+.|..++.+++.+..+.+. .....+++++|+++.++. -..++.|+
T Consensus 265 v~~v~~~~-d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h--------------~~~v~~~~~~~~~~~l~t-~~~d~~i~ 328 (577)
T 2ymu_A 265 VNGVAFRP-DGQTIASASDDKTVKLWNRNGQLLQTLTGH--------------SSSVWGVAFSPDGQTIAS-ASDDKTVK 328 (577)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTSCEEEEECCC--------------SSCEEEEEECTTSSEEEE-EETTSCEE
T ss_pred EEEEEEcC-CCCEEEEEeCCCEEEEEeCCCcEEEEEecC--------------CCCeEEEEECCCCCEEEE-EeCCCeEE
Confidence 45678887 666677767778999999999888776543 124578999999995544 44678899
Q ss_pred EEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccC
Q 001380 683 EIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNL 762 (1089)
Q Consensus 683 ~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~ 762 (1089)
.++.++..+.++.+.. ...+.++++|++..|..+ ...+.|..|+..+..+..+.+..
T Consensus 329 ~w~~~~~~~~~~~~~~-----------------~~v~~~~~s~~g~~l~~~-~~dg~v~~~~~~~~~~~~~~~~~----- 385 (577)
T 2ymu_A 329 LWNRNGQHLQTLTGHS-----------------SSVWGVAFSPDGQTIASA-SDDKTVKLWNRNGQLLQTLTGHS----- 385 (577)
T ss_dssp EEETTSCEEEEECCCS-----------------SCEEEEEECTTSSEEEEE-ETTSEEEEEETTCCEEEEEECCS-----
T ss_pred EEeCCCCeeEEEeCCC-----------------CCEEEEEECCCCCEEEEE-eCCCEEEEEcCCCCEEEEecCCC-----
Confidence 9999888887775322 256789999998665554 45678888887766666665321
Q ss_pred CCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEE
Q 001380 763 NGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGV 842 (1089)
Q Consensus 763 ~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gv 842 (1089)
....+|+++++|+.|. +-+..+.|+.++.++.....+.+.. ....++
T Consensus 386 ----------~~v~~~~~s~dg~~l~-~~~~d~~v~~~~~~~~~~~~~~~~~----------------------~~v~~~ 432 (577)
T 2ymu_A 386 ----------SSVRGVAFSPDGQTIA-SASDDKTVKLWNRNGQLLQTLTGHS----------------------SSVWGV 432 (577)
T ss_dssp ----------SCEEEEEECTTSSCEE-EEETTSEEEEECTTCCEEEEEECCS----------------------SCEEEE
T ss_pred ----------CCeEEEEECCCCCEEE-EEeCCCEEEEEeCCCCEEEEecCCC----------------------CCeEEE
Confidence 2356899999995554 4456688999987654444443311 124678
Q ss_pred EEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCC
Q 001380 843 YCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNK 922 (1089)
Q Consensus 843 a~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~ 922 (1089)
+++++++.+++-..++.|+.+|..+..+.++.+. -.....+++.++|+++++-..++.|+.++..+
T Consensus 433 ~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~--------------~~~v~~~~~spd~~~las~~~d~~i~iw~~~~ 498 (577)
T 2ymu_A 433 AFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGH--------------SSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 498 (577)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTSCEEEEEECC--------------SSCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred EECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCC--------------CCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC
Confidence 9999998888888889999999888777777643 23467899999999888888889999999877
Q ss_pred CCceEEEEe
Q 001380 923 EEPELQTLE 931 (1089)
Q Consensus 923 ~~~~~~~l~ 931 (1089)
. .+.++.
T Consensus 499 ~--~~~~~~ 505 (577)
T 2ymu_A 499 Q--LLQTLT 505 (577)
T ss_dssp C--EEEEEE
T ss_pred C--EEEEEe
Confidence 5 555554
|
| >2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown function; 1.00A {Bacteroides thetaiotaomicron} SCOP: c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A | Back alignment and structure |
|---|
Probab=99.02 E-value=2.9e-11 Score=131.64 Aligned_cols=127 Identities=9% Similarity=0.074 Sum_probs=88.3
Q ss_pred CCccHHHHHHHHHhCCCeEEEEcCCCh------HhHH-HHHHHCCC-C-----------CCCccEEEEcCC---------
Q 001380 166 GFPGALELINQCKSKGLKVAVASSADR------IKVD-ANLAAAGL-P-----------VSMFDAIVSADA--------- 217 (1089)
Q Consensus 166 ~~pG~~~lL~~Lk~~Gi~vaIvSn~~~------~~~~-~~l~~~gl-~-----------~~~fd~i~~~~~--------- 217 (1089)
..+++.++++.+++.|+++.+.++... .... ..++.+++ . ..+++.++..++
T Consensus 86 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 165 (261)
T 2rbk_A 86 PQEEVKAMAAFCEKKGVPCIFVEEHNISVCQPNEMVKKIFYDFLHVNVIPTVSFEEASNKEVIQMTPFITEEEEKEVLPS 165 (261)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEECSSCEEEESCCHHHHHHTTTTTCCCCCCBCCHHHHHTSCCSEEEECCCHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCcEEEeCccHHHHHHHHHhhcccCCCccccchhccCceeEEEEEeCHHHHHHHHHh
Confidence 457888999999988888888876432 1122 22222332 0 134444443321
Q ss_pred ----------------ccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcE
Q 001380 218 ----------------FENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSL 281 (1089)
Q Consensus 218 ----------------~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~ 281 (1089)
...++||+..++.+++++|++++++++|||+.||+.+++.+|+. |..+...++++ ..+++
T Consensus 166 ~~~~~~~~s~~~~~ei~~~~~~K~~~~~~~~~~~~~~~~~~~~iGD~~nD~~~~~~ag~~---v~~~n~~~~~~-~~a~~ 241 (261)
T 2rbk_A 166 IPTCEIGRWYPAFADVTAKGDTKQKGIDEIIRHFGIKLEETMSFGDGGNDISMLRHAAIG---VAMGQAKEDVK-AAADY 241 (261)
T ss_dssp STTCEEECSSTTCCEEESTTCSHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSSEE---EECTTSCHHHH-HHSSE
T ss_pred cCCeEEEEecCCeEEecCCCCChHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHcCce---EEecCccHHHH-hhCCE
Confidence 44689999999999999999999999999999999999999974 33454444554 46899
Q ss_pred EecCcccCCHHHHHh
Q 001380 282 IRKEIGSVSLNDILT 296 (1089)
Q Consensus 282 vi~dl~el~i~~ll~ 296 (1089)
++.+..+-.+..+|.
T Consensus 242 v~~~~~~dGv~~~l~ 256 (261)
T 2rbk_A 242 VTAPIDEDGISKAMK 256 (261)
T ss_dssp ECCCGGGTHHHHHHH
T ss_pred EeccCchhhHHHHHH
Confidence 999998833355554
|
| >1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A | Back alignment and structure |
|---|
Probab=99.02 E-value=8.3e-10 Score=117.24 Aligned_cols=125 Identities=14% Similarity=0.141 Sum_probs=92.9
Q ss_pred ccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCC-c----cEEEE--cCC-----------------------
Q 001380 168 PGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSM-F----DAIVS--ADA----------------------- 217 (1089)
Q Consensus 168 pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~-f----d~i~~--~~~----------------------- 217 (1089)
+.+.+.|++|+++|++++++|++....+...++.+++. .+ + ..++. ...
T Consensus 25 ~~~~~~l~~l~~~g~~~~i~TGr~~~~~~~~~~~l~~~-~~~I~~NGa~i~~~~~~~i~~~~~l~~~~~i~~~~~~~~~~ 103 (227)
T 1l6r_A 25 TKAIESIRSAEKKGLTVSLLSGNVIPVVYALKIFLGIN-GPVFGENGGIMFDNDGSIKKFFSNEGTNKFLEEMSKRTSMR 103 (227)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCC-SCEEEGGGTEEECTTSCEEESSCSHHHHHHHHHHTTTSSCB
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCcHHHHHHHHHhCCC-CeEEEeCCcEEEeCCCCEEEEeccHHHHHHHHHHHHHhcCC
Confidence 45677888899999999999999999999999988885 31 1 00110 000
Q ss_pred --------------------------------------------ccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHH
Q 001380 218 --------------------------------------------FENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQ 253 (1089)
Q Consensus 218 --------------------------------------------~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~ 253 (1089)
...+.+|+..++.+++++|++++++++|||+.||+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~K~~~l~~l~~~~~~~~~~~~~iGD~~nD~~ 183 (227)
T 1l6r_A 104 SILTNRWREASTGFDIDPEDVDYVRKEAESRGFVIFYSGYSWHLMNRGEDKAFAVNKLKEMYSLEYDEILVIGDSNNDMP 183 (227)
T ss_dssp CCGGGGGCSSSEEEBCCGGGHHHHHHHHHTTTEEEEEETTEEEEEETTCSHHHHHHHHHHHTTCCGGGEEEECCSGGGHH
T ss_pred ccccccceecccceEEecCCHHHHHHHHHhcCEEEEecCcEEEEecCCCCHHHHHHHHHHHhCcCHHHEEEECCcHHhHH
Confidence 123478889999999999999999999999999999
Q ss_pred HHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhc
Q 001380 254 AAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTG 297 (1089)
Q Consensus 254 aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~ 297 (1089)
+++.+|+. +. .+...+++++ .+++++.+..+-.+.+++..
T Consensus 184 m~~~ag~~-va--~~n~~~~~k~-~a~~v~~~~~~~Gv~~~l~~ 223 (227)
T 1l6r_A 184 MFQLPVRK-AC--PANATDNIKA-VSDFVSDYSYGEEIGQIFKH 223 (227)
T ss_dssp HHTSSSEE-EE--CTTSCHHHHH-HCSEECSCCTTHHHHHHHHH
T ss_pred HHHHcCce-EE--ecCchHHHHH-hCCEEecCCCCcHHHHHHHH
Confidence 99999964 33 3444455554 58999988776555655543
|
| >3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.6e-10 Score=106.95 Aligned_cols=98 Identities=14% Similarity=0.035 Sum_probs=70.1
Q ss_pred ccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcC-CCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHH
Q 001380 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYK-DMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLW 528 (1089)
Q Consensus 450 ~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~-~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~ 528 (1089)
+-+.+.+||+|||+||++|+.+.+.+...++... ...+.++-|.++ + +....++
T Consensus 15 ~~~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~-----~--------------------~~~~~la 69 (116)
T 3dml_A 15 DDKAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMR-----D--------------------PLPPGLE 69 (116)
T ss_dssp ----CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETT-----S--------------------CCCTTCB
T ss_pred cccCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECC-----C--------------------CCchhHH
Confidence 3355789999999999999998765543322210 011344444331 0 1234678
Q ss_pred HHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHHhc
Q 001380 529 RELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFYG 573 (1089)
Q Consensus 529 ~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~~~ 573 (1089)
..|+|.++||+++++ +|+.+.+..|....+.+.++|+.++..+.
T Consensus 70 ~~~~V~g~PT~i~f~-~G~ev~Ri~G~~~~~~f~~~L~~~l~~~~ 113 (116)
T 3dml_A 70 LARPVTFTPTFVLMA-GDVESGRLEGYPGEDFFWPMLARLIGQAE 113 (116)
T ss_dssp CSSCCCSSSEEEEEE-TTEEEEEEECCCCHHHHHHHHHHHHHHHC
T ss_pred HHCCCCCCCEEEEEE-CCEEEeeecCCCCHHHHHHHHHHHHhhcC
Confidence 889999999999997 99999999999999999999999887664
|
| >3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.00 E-value=9.5e-10 Score=122.49 Aligned_cols=108 Identities=11% Similarity=0.057 Sum_probs=77.9
Q ss_pred CeEEEEcCCChHhHHHHHHHCC--CCCC-CccEEEEcCC----ccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHH
Q 001380 182 LKVAVASSADRIKVDANLAAAG--LPVS-MFDAIVSADA----FENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQA 254 (1089)
Q Consensus 182 i~vaIvSn~~~~~~~~~l~~~g--l~~~-~fd~i~~~~~----~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~a 254 (1089)
+++.+.+. .+..+.+++.+. +. . .++.+.+... ...+.+|+..++.+++++|++++++++|||+.||++|
T Consensus 183 ~ki~~~~~--~~~~~~~~~~l~~~~~-~~~~~~~~s~~~~~ei~~~~~~K~~al~~l~~~lgi~~~e~i~~GDs~NDi~m 259 (304)
T 3l7y_A 183 FKLTLQVK--EEESAQIMKAIADYKT-SQRLVGTASGFGYIDIITKGLHKGWALQQLLKRWNFTSDHLMAFGDGGNDIEM 259 (304)
T ss_dssp EEEEEECC--GGGHHHHHHHHHTSTT-TTTEEEEECSTTEEEEEETTCSHHHHHHHHHHHTTCCGGGEEEEECSGGGHHH
T ss_pred EEEEEEcC--HHHHHHHHHHHHHhcC-CCeEEEEEcCCceEEEEcCCCCHHHHHHHHHHHhCcCHHHEEEECCCHHHHHH
Confidence 35555553 344555555543 32 3 4666655432 3456778899999999999999999999999999999
Q ss_pred HHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHh
Q 001380 255 AKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILT 296 (1089)
Q Consensus 255 A~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~ 296 (1089)
++.+| +.|..+...+++++ .|++|+.+..+-.+.+.|.
T Consensus 260 ~~~ag---~~vam~na~~~~k~-~Ad~v~~~~~edGv~~~l~ 297 (304)
T 3l7y_A 260 LKLAK---YSYAMANAPKNVKA-AANYQAKSNDESGVLDVID 297 (304)
T ss_dssp HHHCT---EEEECTTSCHHHHH-HCSEECCCGGGTHHHHHHH
T ss_pred HHhcC---CeEEcCCcCHHHHH-hccEEcCCCCcchHHHHHH
Confidence 99999 56667766666665 5899999988765555554
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=98.99 E-value=1.3e-08 Score=119.08 Aligned_cols=287 Identities=15% Similarity=0.147 Sum_probs=153.5
Q ss_pred CCCCCCCCCceEEEeecC-CeEEEEeCCCCEEEEEeCCCCEEE-EEecCCCCCCCCCCCCccccCCcceeEEeeC---CC
Q 001380 595 LFTSPLKFPGKLAIDILN-NRLFISDSNHNRIVVTDLDGNFIV-QIGSSGEEGLRDGSFDDATFNRPQGLAYNAK---KN 669 (1089)
Q Consensus 595 ~~~~~l~~P~~vavd~~~-g~L~vsd~~~~~I~~~~~~g~~~~-~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~---g~ 669 (1089)
.+++.|..|++|++.|.+ ++|||++. .++|.+++.+|.... .+... ..-+.+|.. ......+.|||++|+ +.
T Consensus 8 ~va~gL~~P~~~a~~pdG~~rl~V~er-~G~i~~~~~~g~~~~~~~~~~-~~~~~~g~~-~~~e~Gllgia~~P~f~~n~ 84 (463)
T 2wg3_C 8 EVVSGLRQPVGALHSGDGSQRLFILEK-EGYVKILTPEGEIFKEPYLDI-HKLVQSGIK-GGDERGLLSLAFHPNYKKNG 84 (463)
T ss_dssp EEEEEESSEEEEECCSSSSCCEEEEET-TTEEEEECTTSCBCSSCSEEC-TTTBCCCCS-SSCCCSEEEEEECTTHHHHC
T ss_pred EeccCCCCceEEEECCCCCeEEEEEeC-CceEEEEeCCCCeeeeeecCC-cceeccCcc-ccCCCcceeeEeCCCCcCCC
Confidence 456789999999999843 26999998 589999988765311 11110 001111100 001235689999985 34
Q ss_pred EEEEEECCC------------CEEEEEECCCC--------eEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCE
Q 001380 670 LLYVADTEN------------HALREIDFVND--------TVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEK 729 (1089)
Q Consensus 670 ~lyVaD~~n------------~~I~~~d~~~g--------~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~ 729 (1089)
.|||+-+.. .+|.++.++.+ ..+++....... .-.+...|+|+|+| .
T Consensus 85 ~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~------------~~H~g~~l~fgpDG-~ 151 (463)
T 2wg3_C 85 KLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELH------------RKHLGGQLLFGPDG-F 151 (463)
T ss_dssp EEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESS------------SSSCEEEEEECTTS-C
T ss_pred EEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCC------------CcccCCcEeECCCC-c
Confidence 599985421 37877876531 122222111000 11355679999988 9
Q ss_pred EEEEECCC-----------------cEEEEEECCCCeEEEEeCCCccccCCCC---------CCCCccccCCceEEEcCC
Q 001380 730 VYIAMAGQ-----------------HQIWEHSTVDGVTRAFSGDGYERNLNGS---------SSLNTSFAQPSGISLSPD 783 (1089)
Q Consensus 730 lyvad~~~-----------------~~I~~~~~~~g~~~~~~g~g~~~~~~g~---------~~~~~~~~~P~glav~~~ 783 (1089)
|||+.... +.|+++++++... +..+....+++ .-...++.+|.|+++++.
T Consensus 152 LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~----~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~ 227 (463)
T 2wg3_C 152 LYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMC----NVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRH 227 (463)
T ss_dssp EEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCS----SCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESS
T ss_pred EEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcc----cccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCC
Confidence 99985432 3466666554210 00001111111 112356889999999997
Q ss_pred CC------EEEEEeCCCCeEEEEEcCCCCeEEE-ecCCCCCCCCccccCCCCCccccccccCceEEEEcc-------CCc
Q 001380 784 FM------EIYVADSESSSIRALNLKTGGSRLL-AGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAK-------NGQ 849 (1089)
Q Consensus 784 g~------~lyvad~~~~~I~~~~~~~~~~~~~-~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~-------~G~ 849 (1089)
.+ ++|++|...... ....+..+ .|+...+...++.++...+ ..|.|+++-. .|.
T Consensus 228 tg~~~G~l~~~~~D~~G~~~-----~~~ei~~i~~G~~yG~~~P~~~~~~~~g-------~Ap~G~~~Y~G~~fP~~~g~ 295 (463)
T 2wg3_C 228 PTDININLTILCSDSNGKNR-----SSARILQIIKGKDYESEPSLLEFKPFSN-------GPLVGGFVYRGCQSERLYGS 295 (463)
T ss_dssp CSSTTCSEEEEEECC-----------CEEEEEEC----CCSCCCCEECCC-----------CEEEEEECCCSSCTTTTTC
T ss_pred CCCcccceEEEecccCCCCC-----CCCeEeeeccCCCCCCCCCeEEeeCCCC-------ccccceEEEeCCCChhhcce
Confidence 32 678888521100 00111111 2222222233444443211 3578888832 456
Q ss_pred EEEEeCCCCEEEEEeCCCC----eEEEE-eccCCCCCCCCcccccccCCCceEEEccCCcEEEEEC-------CCCEEEE
Q 001380 850 IYVADSYNHKIKKLDPASN----RVSTL-AGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADT-------NNNIIRY 917 (1089)
Q Consensus 850 lyVaD~~n~~I~~~d~~~~----~v~t~-~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~-------~n~~I~~ 917 (1089)
++++|.. ++|.++..+.+ ....+ .+. ..... ......|.+++++++|.|||++. .+++|.+
T Consensus 296 ~f~~~~~-g~i~~~~~~~~~~~~~~~~~~~g~--~~~~~----~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~R 368 (463)
T 2wg3_C 296 YVFGDRN-GNFLTLQQSPVTKQWQEKPLCLGT--SGSCR----GYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYK 368 (463)
T ss_dssp EEEEETT-SCEEEEEC-----CCEEEEECEEE--TTSSC----SCCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEE
T ss_pred EEEecCC-CcEEEEEeCCCCceeeEEEeecCC--ccccc----ccccCcceEEEECCCCCEEEEeccCCcccCCCCcEEE
Confidence 9999986 78888865432 11122 111 00000 11245799999999999999997 4678888
Q ss_pred EeC
Q 001380 918 LDL 920 (1089)
Q Consensus 918 ~~~ 920 (1089)
+..
T Consensus 369 i~~ 371 (463)
T 2wg3_C 369 IVD 371 (463)
T ss_dssp EEC
T ss_pred ecC
Confidence 874
|
| >2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.5e-09 Score=116.38 Aligned_cols=90 Identities=23% Similarity=0.262 Sum_probs=75.2
Q ss_pred ccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcC---CCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChh
Q 001380 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYK---DMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMN 526 (1089)
Q Consensus 450 ~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~---~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~ 526 (1089)
+++++++|++||++||++|+.+.|.|++++++++ +.++.+..|.+ +.+.+
T Consensus 135 ~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~---------------------------~~~~~ 187 (243)
T 2hls_A 135 SLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEA---------------------------YENPD 187 (243)
T ss_dssp HCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEET---------------------------TTCHH
T ss_pred HcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEEC---------------------------ccCHH
Confidence 5678999999999999999999999999999983 24688888854 34567
Q ss_pred HHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHH
Q 001380 527 LWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLF 571 (1089)
Q Consensus 527 l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~ 571 (1089)
+++.|+|.++|++++ +|+++ +.|..+.+++.++|.+.+..
T Consensus 188 ~~~~~~V~~vPt~~i---~G~~~--~~G~~~~~~l~~~l~~~~~~ 227 (243)
T 2hls_A 188 IADKYGVMSVPSIAI---NGYLV--FVGVPYEEDFLDYVKSAAEG 227 (243)
T ss_dssp HHHHTTCCSSSEEEE---TTEEE--EESCCCHHHHHHHHHHHHTT
T ss_pred HHHHcCCeeeCeEEE---CCEEE--EeCCCCHHHHHHHHHHHhhc
Confidence 889999999999988 78875 77888888888888877753
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=5.6e-07 Score=100.72 Aligned_cols=231 Identities=17% Similarity=0.203 Sum_probs=162.2
Q ss_pred eEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEE
Q 001380 605 KLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALRE 683 (1089)
Q Consensus 605 ~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~ 683 (1089)
.+++.+ ++.++++-...+.|.++|.. |+.+..+... . .....++++|+|+ .+++...++.|+.
T Consensus 85 ~~~~~~-~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~-~-------------~~~~~~~~spdg~-~l~~g~~dg~v~i 148 (321)
T 3ow8_A 85 SVDISH-TLPIAASSSLDAHIRLWDLENGKQIKSIDAG-P-------------VDAWTLAFSPDSQ-YLATGTHVGKVNI 148 (321)
T ss_dssp EEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECC-T-------------TCCCCEEECTTSS-EEEEECTTSEEEE
T ss_pred EEEECC-CCCEEEEEeCCCcEEEEECCCCCEEEEEeCC-C-------------ccEEEEEECCCCC-EEEEEcCCCcEEE
Confidence 466776 66677777778999999986 6666665443 1 1346799999999 4555667889999
Q ss_pred EECCCCeEEE-EecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEE-EEeCCCcccc
Q 001380 684 IDFVNDTVRT-LAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTR-AFSGDGYERN 761 (1089)
Q Consensus 684 ~d~~~g~v~~-~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~-~~~g~g~~~~ 761 (1089)
++..++.... +...+ .....++++|+++.|..+ ...+.|..||..++... .+.+..
T Consensus 149 ~~~~~~~~~~~~~~~~-----------------~~v~~~~~spdg~~lasg-~~dg~i~iwd~~~~~~~~~~~~h~---- 206 (321)
T 3ow8_A 149 FGVESGKKEYSLDTRG-----------------KFILSIAYSPDGKYLASG-AIDGIINIFDIATGKLLHTLEGHA---- 206 (321)
T ss_dssp EETTTCSEEEEEECSS-----------------SCEEEEEECTTSSEEEEE-ETTSCEEEEETTTTEEEEEECCCS----
T ss_pred EEcCCCceeEEecCCC-----------------ceEEEEEECCCCCEEEEE-cCCCeEEEEECCCCcEEEEEcccC----
Confidence 9988765433 32211 245789999998655544 45688999999887654 333211
Q ss_pred CCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeE-EEecCCCCCCCCccccCCCCCccccccccCce
Q 001380 762 LNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR-LLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPL 840 (1089)
Q Consensus 762 ~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~-~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~ 840 (1089)
.....++++|++ .++++-+..+.|+.++..++... .+.+. -....
T Consensus 207 -----------~~v~~l~~spd~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~h----------------------~~~v~ 252 (321)
T 3ow8_A 207 -----------MPIRSLTFSPDS-QLLVTASDDGYIKIYDVQHANLAGTLSGH----------------------ASWVL 252 (321)
T ss_dssp -----------SCCCEEEECTTS-CEEEEECTTSCEEEEETTTCCEEEEECCC----------------------SSCEE
T ss_pred -----------CceeEEEEcCCC-CEEEEEcCCCeEEEEECCCcceeEEEcCC----------------------CCceE
Confidence 134689999998 55666677889999998865543 22211 12356
Q ss_pred EEEEccCCcEEEEeCCCCEEEEEeCCCCeEE-EEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEe
Q 001380 841 GVYCAKNGQIYVADSYNHKIKKLDPASNRVS-TLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLD 919 (1089)
Q Consensus 841 gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~-t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~ 919 (1089)
.++++++|..+++-+..+.|+.+|..++.+. ++.+. -....++++.++|+.+++-..++.|+.++
T Consensus 253 ~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h--------------~~~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 253 NVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH--------------QDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC--------------SSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCC--------------CCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 8999999998888888999999998876643 34321 13367899999998888888889999887
Q ss_pred CC
Q 001380 920 LN 921 (1089)
Q Consensus 920 ~~ 921 (1089)
..
T Consensus 319 ~p 320 (321)
T 3ow8_A 319 CP 320 (321)
T ss_dssp CC
T ss_pred CC
Confidence 53
|
| >1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A {Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A* 2hf2_A | Back alignment and structure |
|---|
Probab=98.96 E-value=2e-10 Score=125.82 Aligned_cols=113 Identities=10% Similarity=0.099 Sum_probs=82.5
Q ss_pred HhCCCeEEEEcCCChHhHHHHHHHCC--CCCCCccEEEEc----CCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhh
Q 001380 178 KSKGLKVAVASSADRIKVDANLAAAG--LPVSMFDAIVSA----DAFENLKPAPDIFLSASKILNVPTSECIVIEDALAG 251 (1089)
Q Consensus 178 k~~Gi~vaIvSn~~~~~~~~~l~~~g--l~~~~fd~i~~~----~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~D 251 (1089)
++.+++++++++.. ....+++.+. +. ..|+.+.++ +....+++|+..++.+++++|++++++++|||+.||
T Consensus 143 ~~~~~ki~i~~~~~--~~~~~~~~l~~~~~-~~~~~~~s~~~~~ei~~~~~~K~~~~~~l~~~l~i~~~~~~~~GD~~nD 219 (271)
T 1rlm_A 143 DDVLFKFSLNLPDE--QIPLVIDKLHVALD-GIMKPVTSGFGFIDLIIPGLHKANGISRLLKRWDLSPQNVVAIGDSGND 219 (271)
T ss_dssp CSCEEEEEEECCGG--GHHHHHHHHHHHTT-TSSEEEECSTTEEEEECTTCSHHHHHHHHHHHHTCCGGGEEEEECSGGG
T ss_pred CCceEEEEEEcCHH--HHHHHHHHHHHHcC-CcEEEEeccCCeEEEEcCCCChHHHHHHHHHHhCCCHHHEEEECCcHHH
Confidence 34567888888753 2455555443 43 457777665 334568999999999999999999999999999999
Q ss_pred HHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhc
Q 001380 252 VQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTG 297 (1089)
Q Consensus 252 i~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~ 297 (1089)
+.+++.+|+. |..+...+++++ .+++++.+..+-.+.++|..
T Consensus 220 ~~m~~~ag~~---va~~na~~~~k~-~a~~v~~~~~~dGVa~~l~~ 261 (271)
T 1rlm_A 220 AEMLKMARYS---FAMGNAAENIKQ-IARYATDDNNHEGALNVIQA 261 (271)
T ss_dssp HHHHHHCSEE---EECTTCCHHHHH-HCSEECCCGGGTHHHHHHHH
T ss_pred HHHHHHcCCe---EEeCCccHHHHH-hCCeeCcCCCCChHHHHHHH
Confidence 9999999973 334444455554 58999998877555555543
|
| >3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-09 Score=129.19 Aligned_cols=97 Identities=16% Similarity=0.238 Sum_probs=83.6
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCC--CCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD--MPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~--~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
.+|++||+|||+||++|+.++|.+.++++++++ .++.++.|+++. |.+.++++
T Consensus 29 ~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~-------------------------d~~~~l~~ 83 (519)
T 3t58_A 29 SSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAE-------------------------ETNSAVCR 83 (519)
T ss_dssp CSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTS-------------------------GGGHHHHH
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCc-------------------------cccHHHHH
Confidence 469999999999999999999999999999986 369999996520 34678999
Q ss_pred HhCCCceeEEEEECC---CCcEEEEecCCCchhhHHHHHHHHHHHhc
Q 001380 530 ELGVNSWPTFAVVGP---NGKLLAQLAGEGHRKDLDDLVEAALLFYG 573 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~---~G~i~~~~~G~~~~~~l~~~l~~~l~~~~ 573 (1089)
.|+|.++|+++++++ +|+.+....|..+.+.+.+.|.+.++...
T Consensus 84 ~~~V~~~PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~~~ 130 (519)
T 3t58_A 84 EFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHR 130 (519)
T ss_dssp HTTCCSBSEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTTCC
T ss_pred HcCCcccCEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhhcc
Confidence 999999999999987 78888888888899999999988886543
|
| >3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.96 E-value=9.7e-10 Score=100.22 Aligned_cols=85 Identities=12% Similarity=0.067 Sum_probs=65.9
Q ss_pred CCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhC
Q 001380 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELG 532 (1089)
Q Consensus 453 gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~ 532 (1089)
++++||+|+|+||++|+...|.++++.++ . ++.++-|.+ ++.+ +-.++++..||
T Consensus 24 ~~~vvi~khatwCgpc~~~~~~~e~~~~~-~--~v~~~~vdV-----de~r------------------~~Sn~IA~~~~ 77 (112)
T 3iv4_A 24 NKYVFVLKHSETCPISANAYDQFNKFLYE-R--DMDGYYLIV-----QQER------------------DLSDYIAKKTN 77 (112)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHH-H--TCCEEEEEG-----GGGH------------------HHHHHHHHHHT
T ss_pred CCCEEEEEECCcCHhHHHHHHHHHHHhcc-C--CceEEEEEe-----ecCc------------------hhhHHHHHHhC
Confidence 78999999999999999999999999885 3 355566643 1111 11246899999
Q ss_pred CCc-eeEEEEECCCCcEEEE-ecCCCchhhHHHH
Q 001380 533 VNS-WPTFAVVGPNGKLLAQ-LAGEGHRKDLDDL 564 (1089)
Q Consensus 533 v~~-~Pt~~lid~~G~i~~~-~~G~~~~~~l~~~ 564 (1089)
|++ .|+++++ ++|+++++ ..+..+.+.+.+.
T Consensus 78 V~h~sPq~il~-k~G~~v~~~SH~~I~~~~l~~~ 110 (112)
T 3iv4_A 78 VKHESPQAFYF-VNGEMVWNRDHGDINVSSLAQA 110 (112)
T ss_dssp CCCCSSEEEEE-ETTEEEEEEEGGGCSHHHHHHH
T ss_pred CccCCCeEEEE-ECCEEEEEeeccccCHHHHHHh
Confidence 995 9999999 99999998 5567777766554
|
| >1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.5e-09 Score=103.21 Aligned_cols=93 Identities=17% Similarity=0.208 Sum_probs=69.6
Q ss_pred cCCCEEEEEEecC-------CCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecC
Q 001380 451 LKGKVVVLDFWTY-------CCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDG 523 (1089)
Q Consensus 451 ~~gk~vll~Fwa~-------wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~ 523 (1089)
.+||++||+||++ ||++|+.+.|.|.++++++++ ++.++.|.+. + ...| .|.
T Consensus 22 ~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vd~~-----~-~~~~--------------~d~ 80 (123)
T 1wou_A 22 HNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE-GCVFIYCQVG-----E-KPYW--------------KDP 80 (123)
T ss_dssp TTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT-TEEEEEEECC-----C-HHHH--------------HCT
T ss_pred hCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCC-CcEEEEEECC-----C-chhh--------------hch
Confidence 3589999999999 999999999999999999875 5999999652 1 1111 266
Q ss_pred ChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHH
Q 001380 524 DMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVE 566 (1089)
Q Consensus 524 ~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~ 566 (1089)
+..+++.|+|.++|++++++..+++. ...| ...+.++++|+
T Consensus 81 ~~~~~~~~~i~~~Pt~~~~~~~~~~~-g~~~-~~~~~l~~~i~ 121 (123)
T 1wou_A 81 NNDFRKNLKVTAVPTLLKYGTPQKLV-ESEC-LQANLVEMLFS 121 (123)
T ss_dssp TCHHHHHHCCCSSSEEEETTSSCEEE-GGGG-GCHHHHHHHHH
T ss_pred hHHHHHHCCCCeeCEEEEEcCCceEe-cccc-CCHHHHHHHHh
Confidence 77899999999999999997733332 2222 24555555554
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=98.94 E-value=3.8e-07 Score=101.64 Aligned_cols=234 Identities=11% Similarity=0.042 Sum_probs=160.2
Q ss_pred CCceEEEeecCCeEEEEeCCCCEEEEEeCCCCE---EEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCC
Q 001380 602 FPGKLAIDILNNRLFISDSNHNRIVVTDLDGNF---IVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTEN 678 (1089)
Q Consensus 602 ~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~---~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n 678 (1089)
....+++++ +++++++-...+.|.+++.+... ...+... -.....++++++++.++++. .+
T Consensus 99 ~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--------------~~~i~~~~~~~~~~~l~~~~-~d 162 (337)
T 1gxr_A 99 YIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSS--------------APACYALAISPDSKVCFSCC-SD 162 (337)
T ss_dssp BEEEEEECT-TSSEEEEEESSSEEEEEECCCC--EEEEEEECS--------------SSCEEEEEECTTSSEEEEEE-TT
T ss_pred cEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCCcceeeecccC--------------CCceEEEEECCCCCEEEEEe-CC
Confidence 345688887 55555555567899999987433 2233222 12457899999999666665 56
Q ss_pred CEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCc
Q 001380 679 HALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGY 758 (1089)
Q Consensus 679 ~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~ 758 (1089)
+.|+.+|..++......... -.....++++|+++.|+++. ..+.|..||..++........
T Consensus 163 g~v~~~d~~~~~~~~~~~~~----------------~~~i~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~-- 223 (337)
T 1gxr_A 163 GNIAVWDLHNQTLVRQFQGH----------------TDGASCIDISNDGTKLWTGG-LDNTVRSWDLREGRQLQQHDF-- 223 (337)
T ss_dssp SCEEEEETTTTEEEEEECCC----------------SSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTTEEEEEEEC--
T ss_pred CcEEEEeCCCCceeeeeecc----------------cCceEEEEECCCCCEEEEEe-cCCcEEEEECCCCceEeeecC--
Confidence 78999999887654433111 12568899999886666554 578899999988765443211
Q ss_pred cccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccC
Q 001380 759 ERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQH 838 (1089)
Q Consensus 759 ~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~ 838 (1089)
-.....++++++++.|+++ ...+.|+.++..++....+.+. -..
T Consensus 224 -------------~~~v~~~~~s~~~~~l~~~-~~~~~i~~~~~~~~~~~~~~~~----------------------~~~ 267 (337)
T 1gxr_A 224 -------------TSQIFSLGYCPTGEWLAVG-MESSNVEVLHVNKPDKYQLHLH----------------------ESC 267 (337)
T ss_dssp -------------SSCEEEEEECTTSSEEEEE-ETTSCEEEEETTSSCEEEECCC----------------------SSC
T ss_pred -------------CCceEEEEECCCCCEEEEE-cCCCcEEEEECCCCCeEEEcCC----------------------ccc
Confidence 1135689999999666555 4568899999987655433221 124
Q ss_pred ceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEE
Q 001380 839 PLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYL 918 (1089)
Q Consensus 839 P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~ 918 (1089)
..+++++++|+++++-..++.|+.+|..++........ -..+..+++.++|+.+++-..++.|+.+
T Consensus 268 v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~--------------~~~v~~~~~s~~~~~l~~~~~dg~i~iw 333 (337)
T 1gxr_A 268 VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE--------------SSSVLSCDISVDDKYIVTGSGDKKATVY 333 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC--------------SSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred eeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecC--------------CCcEEEEEECCCCCEEEEecCCCeEEEE
Confidence 67899999999888888889999999887766543321 2346788999999877777778888887
Q ss_pred eC
Q 001380 919 DL 920 (1089)
Q Consensus 919 ~~ 920 (1089)
++
T Consensus 334 ~~ 335 (337)
T 1gxr_A 334 EV 335 (337)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.2e-09 Score=120.90 Aligned_cols=91 Identities=18% Similarity=0.312 Sum_probs=75.1
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.++++||+|||+||++|+.+.|.+.++++++++. +.++.|.++ .+.+.++++.|
T Consensus 34 ~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~-~~~~~v~~d-------------------------~~~~~~l~~~~ 87 (298)
T 3ed3_A 34 TNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGV-VQVAAVNCD-------------------------LNKNKALCAKY 87 (298)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-SEEEEEETT-------------------------STTTHHHHHHT
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCC-cEEEEEEcc-------------------------CccCHHHHHhC
Confidence 4789999999999999999999999999999865 788888652 02467899999
Q ss_pred CCCceeEEEEECCCCc-----------------EEEEecCCCchhhHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGK-----------------LLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~-----------------i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
+|.++|++++++. |+ ....+.|..+.+.+.+++...+
T Consensus 88 ~I~~~Pt~~~~~~-g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~ 141 (298)
T 3ed3_A 88 DVNGFPTLMVFRP-PKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRI 141 (298)
T ss_dssp TCCBSSEEEEEEC-CCC-------------CCCEEEECCSCCSHHHHHHHHHTTC
T ss_pred CCCccceEEEEEC-CceeecccccccccccccccceeecCCcCHHHHHHHHHHhc
Confidence 9999999999965 44 3567888888888888876543
|
| >3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0 | Back alignment and structure |
|---|
Probab=98.94 E-value=7.3e-10 Score=120.93 Aligned_cols=77 Identities=16% Similarity=0.102 Sum_probs=65.4
Q ss_pred ccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhc
Q 001380 218 FENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTG 297 (1089)
Q Consensus 218 ~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~ 297 (1089)
...+.+|+..++.+++++|++++++++|||+.||++|++.+| +.|..+...+++++ .|++|+.+..+-.+...|..
T Consensus 189 ~~~~~~K~~~l~~l~~~lgi~~~~~ia~GD~~NDi~m~~~ag---~~vam~na~~~~k~-~Ad~v~~~~~edGv~~~l~~ 264 (268)
T 3r4c_A 189 NVAGTSKATGLSLFADYYRVKVSEIMACGDGGNDIPMLKAAG---IGVAMGNASEKVQS-VADFVTDTVDNSGLYKALKH 264 (268)
T ss_dssp EETTCCHHHHHHHHHHHTTCCGGGEEEEECSGGGHHHHHHSS---EEEECTTSCHHHHH-TCSEECCCTTTTHHHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHcCCCHHHEEEECCcHHhHHHHHhCC---CeEEeCCCcHHHHH-hcCEeeCCCCcCHHHHHHHH
Confidence 445778899999999999999999999999999999999999 56777776777776 49999999888777777654
Q ss_pred c
Q 001380 298 G 298 (1089)
Q Consensus 298 ~ 298 (1089)
+
T Consensus 265 ~ 265 (268)
T 3r4c_A 265 F 265 (268)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C | Back alignment and structure |
|---|
Probab=98.93 E-value=7.4e-10 Score=117.70 Aligned_cols=74 Identities=16% Similarity=0.237 Sum_probs=63.3
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
++++|||+||++||++|+.+.|.|.+|+++|++ +.++.|.+ + . ..++..|
T Consensus 132 ~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~--v~f~kVd~-----d----------------------~-~~l~~~~ 181 (245)
T 1a0r_P 132 KITTIVVHIYEDGIKGCDALNSSLICLAAEYPM--VKFCKIKA-----S----------------------N-TGAGDRF 181 (245)
T ss_dssp TTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTT--SEEEEEEH-----H----------------------H-HCCTTSS
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHHHHCCC--CEEEEEeC-----C----------------------c-HHHHHHC
Confidence 589999999999999999999999999999974 88888843 1 1 2366789
Q ss_pred CCCceeEEEEECCCCcEEEEecCCC
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEG 556 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~ 556 (1089)
+|.++||++++ ++|+++.++.|..
T Consensus 182 ~I~~~PTll~~-~~G~~v~~~vG~~ 205 (245)
T 1a0r_P 182 SSDVLPTLLVY-KGGELLSNFISVT 205 (245)
T ss_dssp CTTTCSEEEEE-ETTEEEEEETTGG
T ss_pred CCCCCCEEEEE-ECCEEEEEEeCCc
Confidence 99999999998 5999999998864
|
| >2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.6e-09 Score=124.63 Aligned_cols=91 Identities=18% Similarity=0.325 Sum_probs=78.9
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCC-----CCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD-----MPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMN 526 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~-----~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~ 526 (1089)
.++++||+|||+||++|+.+.|.+.++++++++ .++.++.|.+ +.+..
T Consensus 21 ~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~---------------------------~~~~~ 73 (382)
T 2r2j_A 21 NADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDC---------------------------DQHSD 73 (382)
T ss_dssp HCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEET---------------------------TTCHH
T ss_pred cCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEC---------------------------CccHH
Confidence 579999999999999999999999999999853 3488888865 45678
Q ss_pred HHHHhCCCceeEEEEECCCCcEEEE-ecCCCchhhHHHHHHHHHH
Q 001380 527 LWRELGVNSWPTFAVVGPNGKLLAQ-LAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 527 l~~~~~v~~~Pt~~lid~~G~i~~~-~~G~~~~~~l~~~l~~~l~ 570 (1089)
+++.|+|.++||++++ ++|+++.+ +.|..+.+.+.+++...+.
T Consensus 74 l~~~~~v~~~Pt~~~f-~~G~~~~~~~~G~~~~~~l~~~i~~~~~ 117 (382)
T 2r2j_A 74 IAQRYRISKYPTLKLF-RNGMMMKREYRGQRSVKALADYIRQQKS 117 (382)
T ss_dssp HHHHTTCCEESEEEEE-ETTEEEEEECCSCCSHHHHHHHHHHHHS
T ss_pred HHHhcCCCcCCEEEEE-eCCcEeeeeecCcchHHHHHHHHHHhcc
Confidence 9999999999999988 78998874 8899899999998887663
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A | Back alignment and structure |
|---|
Probab=98.93 E-value=2.5e-09 Score=114.54 Aligned_cols=89 Identities=17% Similarity=0.435 Sum_probs=75.5
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCC--CEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDM--PFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~--~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
.+++++|+||++||++|+.+.|.+.++++++++. ++.++.|.+ +.+.++++
T Consensus 146 ~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~---------------------------~~~~~l~~ 198 (241)
T 3idv_A 146 DADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDA---------------------------TAETDLAK 198 (241)
T ss_dssp HCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEET---------------------------TTCHHHHH
T ss_pred cCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEEC---------------------------CCCHHHHH
Confidence 5789999999999999999999999999998753 478888854 44667999
Q ss_pred HhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 530 ELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
.|+|.++|++++++ +|+.+. +.|..+.+.+.++|.+.+
T Consensus 199 ~~~v~~~Pt~~~~~-~g~~~~-~~g~~~~~~l~~~l~~~~ 236 (241)
T 3idv_A 199 RFDVSGYPTLKIFR-KGRPYD-YNGPREKYGIVDYMIEQS 236 (241)
T ss_dssp HTTCCSSSEEEEEE-TTEEEE-CCSCCSHHHHHHHHHHHT
T ss_pred HcCCcccCEEEEEE-CCeEEE-ecCCCCHHHHHHHHHhhh
Confidence 99999999999995 688766 889888888888887654
|
| >2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 | Back alignment and structure |
|---|
Probab=98.92 E-value=6.8e-10 Score=116.49 Aligned_cols=76 Identities=16% Similarity=0.297 Sum_probs=64.9
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
+|++|||+||++||++|+.+.|.|.+++++|+ ++.++.|.+ + +..++..|
T Consensus 119 ~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~--~v~f~~vd~---------------------------~-~~~l~~~~ 168 (217)
T 2trc_P 119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYP--MVKFCKIRA---------------------------S-NTGAGDRF 168 (217)
T ss_dssp TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT--TSEEEEEEH---------------------------H-HHTCSTTS
T ss_pred CCcEEEEEEECCCCccHHHHHHHHHHHHHHCC--CeEEEEEEC---------------------------C-cHHHHHHC
Confidence 56999999999999999999999999999986 588888843 2 23467789
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCch
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHR 558 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~ 558 (1089)
+|.++||++++ ++|+++.++.|....
T Consensus 169 ~i~~~PTl~~~-~~G~~v~~~~G~~~~ 194 (217)
T 2trc_P 169 SSDVLPTLLVY-KGGELISNFISVAEQ 194 (217)
T ss_dssp CGGGCSEEEEE-ETTEEEEEETTGGGG
T ss_pred CCCCCCEEEEE-ECCEEEEEEeCCccc
Confidence 99999999999 699999999987653
|
| >1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.5e-09 Score=123.52 Aligned_cols=87 Identities=16% Similarity=0.167 Sum_probs=75.1
Q ss_pred CCCEEEEEEecCCCcchhhhhhh-------HHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCC
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPD-------LEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGD 524 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~-------l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~ 524 (1089)
+++++||+|||+||+ |+.++|. +.++++++++.++.++.|.+ +.+
T Consensus 27 ~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~---------------------------~~~ 78 (350)
T 1sji_A 27 KYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDA---------------------------KKE 78 (350)
T ss_dssp TCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEET---------------------------TTT
T ss_pred hCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeC---------------------------CCC
Confidence 579999999999999 9999999 89999998866799999965 456
Q ss_pred hhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 525 MNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 525 ~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
.+++++|+|.++||++++ ++|+ ...+.|..+.+.+.+++...
T Consensus 79 ~~l~~~~~v~~~Pt~~~~-~~g~-~~~~~G~~~~~~l~~~i~~~ 120 (350)
T 1sji_A 79 AKLAKKLGFDEEGSLYVL-KGDR-TIEFDGEFAADVLVEFLLDL 120 (350)
T ss_dssp HHHHHHHTCCSTTEEEEE-ETTE-EEEECSCCCHHHHHHHHHTT
T ss_pred HHHHHhcCCCccceEEEE-ECCc-EEEecCCCCHHHHHHHHHHh
Confidence 789999999999999999 7888 45789998888888877643
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=98.89 E-value=5.2e-06 Score=93.43 Aligned_cols=246 Identities=15% Similarity=0.181 Sum_probs=167.0
Q ss_pred CCCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCC
Q 001380 601 KFPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENH 679 (1089)
Q Consensus 601 ~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~ 679 (1089)
..-..+++++ +++++++-...+.|.+++.. ++.+..+... . .....++++|+|+.|..+ ..++
T Consensus 56 ~~v~~~~~s~-d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~-~-------------~~v~~~~~s~~~~~l~s~-~~d~ 119 (340)
T 1got_B 56 AKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNKVHAIPLR-S-------------SWVMTCAYAPSGNYVACG-GLDN 119 (340)
T ss_dssp SCEEEEEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECS-S-------------SCEEEEEECTTSSEEEEE-ETTC
T ss_pred CceEEEEECC-CCCEEEEEeCCCcEEEEECCCCCcceEeecC-C-------------ccEEEEEECCCCCEEEEE-eCCC
Confidence 3445678887 67777777788999999975 6666665443 1 135788999999955444 4578
Q ss_pred EEEEEECCCCe-----EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEE-EE
Q 001380 680 ALREIDFVNDT-----VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTR-AF 753 (1089)
Q Consensus 680 ~I~~~d~~~g~-----v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~-~~ 753 (1089)
.|+.++..++. ...+.+.. .....+++.+++ . +++....+.|..||..++... .+
T Consensus 120 ~v~iw~~~~~~~~~~~~~~~~~h~-----------------~~v~~~~~~~~~-~-l~s~s~d~~i~~wd~~~~~~~~~~ 180 (340)
T 1got_B 120 ICSIYNLKTREGNVRVSRELAGHT-----------------GYLSCCRFLDDN-Q-IVTSSGDTTCALWDIETGQQTTTF 180 (340)
T ss_dssp EEEEEETTTCSBSCEEEEEEECCS-----------------SCEEEEEEEETT-E-EEEEETTSCEEEEETTTTEEEEEE
T ss_pred eEEEEECccCCCcceeEEEecCCC-----------------ccEEEEEECCCC-c-EEEEECCCcEEEEECCCCcEEEEE
Confidence 89999987542 22232211 244667888766 5 455566788999998887654 33
Q ss_pred eCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeE-EEecCCCCCCCCccccCCCCCccc
Q 001380 754 SGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR-LLAGGDPIFPDNLFKFGDRDGMGS 832 (1089)
Q Consensus 754 ~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~-~~~g~~~~~~~~l~~~g~~dg~~~ 832 (1089)
.+. -.....+++++++ .++++-+..+.|+.++..++... .+.+.
T Consensus 181 ~~h---------------~~~v~~~~~~~~~-~~l~sg~~d~~v~~wd~~~~~~~~~~~~h------------------- 225 (340)
T 1got_B 181 TGH---------------TGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCRQTFTGH------------------- 225 (340)
T ss_dssp CCC---------------SSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSEEEEECCC-------------------
T ss_pred cCC---------------CCceEEEEECCCC-CEEEEEeCCCcEEEEECCCCeeEEEEcCC-------------------
Confidence 321 1235689999998 67777778899999998866543 22111
Q ss_pred cccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCC
Q 001380 833 EVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNN 912 (1089)
Q Consensus 833 ~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n 912 (1089)
-....+++++|+|+.+++-+..+.|+.+|..++.......... .......+++.++|+++++...+
T Consensus 226 ---~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~s~~g~~l~~g~~d 291 (340)
T 1got_B 226 ---ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN-----------IICGITSVSFSKSGRLLLAGYDD 291 (340)
T ss_dssp ---SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT-----------CCSCEEEEEECTTSSEEEEEETT
T ss_pred ---cCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCC-----------cccceEEEEECCCCCEEEEECCC
Confidence 1135689999999988888889999999987665433221100 11235678899999998988899
Q ss_pred CEEEEEeCCCCCceEEEEe
Q 001380 913 NIIRYLDLNKEEPELQTLE 931 (1089)
Q Consensus 913 ~~I~~~~~~~~~~~~~~l~ 931 (1089)
+.|+.++..... .+.++.
T Consensus 292 ~~i~vwd~~~~~-~~~~~~ 309 (340)
T 1got_B 292 FNCNVWDALKAD-RAGVLA 309 (340)
T ss_dssp SEEEEEETTTCC-EEEEEE
T ss_pred CeEEEEEcccCc-EeeEee
Confidence 999999987652 344443
|
| >2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A | Back alignment and structure |
|---|
Probab=98.87 E-value=4e-09 Score=112.19 Aligned_cols=89 Identities=13% Similarity=0.094 Sum_probs=75.6
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.++++|++||++||++|+.+.|.++++++++. ++.++.|.+ +.+.++++.|
T Consensus 135 ~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~--~v~~~~vd~---------------------------~~~~~l~~~~ 185 (229)
T 2ywm_A 135 DIPIEIWVFVTTSCGYCPSAAVMAWDFALAND--YITSKVIDA---------------------------SENQDLAEQF 185 (229)
T ss_dssp CSCEEEEEEECTTCTTHHHHHHHHHHHHHHCT--TEEEEEEEG---------------------------GGCHHHHHHT
T ss_pred CCCeEEEEEECCCCcchHHHHHHHHHHHHHCC--CeEEEEEEC---------------------------CCCHHHHHHc
Confidence 45667899999999999999999999999984 588888854 3456799999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHHhc
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFYG 573 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~~~ 573 (1089)
+|.++|++++ +|+ +.++.|..+.+.+.++|...++..+
T Consensus 186 ~v~~~Pt~~~---~G~-~~~~~G~~~~~~l~~~l~~~~~~~~ 223 (229)
T 2ywm_A 186 QVVGVPKIVI---NKG-VAEFVGAQPENAFLGYIMAVYEKLK 223 (229)
T ss_dssp TCCSSSEEEE---GGG-TEEEESCCCHHHHHHHHHHHHHHHH
T ss_pred CCcccCEEEE---CCE-EEEeeCCCCHHHHHHHHHHHhhhhh
Confidence 9999999988 788 5668899999999999998887644
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=98.87 E-value=1.2e-06 Score=97.42 Aligned_cols=237 Identities=14% Similarity=0.114 Sum_probs=161.0
Q ss_pred CCceEEEeecCCeEEEEeCCCCEEEEEeCCC-C---EEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC
Q 001380 602 FPGKLAIDILNNRLFISDSNHNRIVVTDLDG-N---FIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE 677 (1089)
Q Consensus 602 ~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g-~---~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~ 677 (1089)
....+++++ +++++++-. .+.|.+++.+. + .+..+...+. -.....++++++++.|+++. .
T Consensus 53 ~v~~~~~~~-~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~~~~-~ 117 (337)
T 1gxr_A 53 VVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNR------------DNYIRSCKLLPDGCTLIVGG-E 117 (337)
T ss_dssp CCCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCT------------TSBEEEEEECTTSSEEEEEE-S
T ss_pred ceEEEEEec-CCcEEEEcC-CCeEEEEECCCCCceeeeecccccCC------------CCcEEEEEEcCCCCEEEEEc-C
Confidence 345788887 555555555 78999998763 2 1222221101 12467899999999666654 5
Q ss_pred CCEEEEEECCCCeEE---EEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEE-E
Q 001380 678 NHALREIDFVNDTVR---TLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRA-F 753 (1089)
Q Consensus 678 n~~I~~~d~~~g~v~---~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~-~ 753 (1089)
++.|+.++..++... .+.+. -.....++++++++.++++. ..+.|..||..++.... +
T Consensus 118 d~~i~~~d~~~~~~~~~~~~~~~-----------------~~~i~~~~~~~~~~~l~~~~-~dg~v~~~d~~~~~~~~~~ 179 (337)
T 1gxr_A 118 ASTLSIWDLAAPTPRIKAELTSS-----------------APACYALAISPDSKVCFSCC-SDGNIAVWDLHNQTLVRQF 179 (337)
T ss_dssp SSEEEEEECCCC--EEEEEEECS-----------------SSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEEEEE
T ss_pred CCcEEEEECCCCCcceeeecccC-----------------CCceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCceeeee
Confidence 788999999876522 22211 12467899999886666654 46789999988776543 3
Q ss_pred eCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCcccc
Q 001380 754 SGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSE 833 (1089)
Q Consensus 754 ~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~ 833 (1089)
.+. -.....++++++++.|+++ ...+.|+.++..++........
T Consensus 180 ~~~---------------~~~i~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~-------------------- 223 (337)
T 1gxr_A 180 QGH---------------TDGASCIDISNDGTKLWTG-GLDNTVRSWDLREGRQLQQHDF-------------------- 223 (337)
T ss_dssp CCC---------------SSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTTEEEEEEEC--------------------
T ss_pred ecc---------------cCceEEEEECCCCCEEEEE-ecCCcEEEEECCCCceEeeecC--------------------
Confidence 211 1246789999998555554 4678999999886554322110
Q ss_pred ccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCC
Q 001380 834 VLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNN 913 (1089)
Q Consensus 834 ~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~ 913 (1089)
-.....++++++|+.+++-..++.|+.+|..++....+.+. -.....+++.++|+++++-..++
T Consensus 224 --~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~~~dg 287 (337)
T 1gxr_A 224 --TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLH--------------ESCVLSLKFAYCGKWFVSTGKDN 287 (337)
T ss_dssp --SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCC--------------SSCEEEEEECTTSSEEEEEETTS
T ss_pred --CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCC--------------ccceeEEEECCCCCEEEEecCCC
Confidence 11357789999998777777889999999988877665432 23477899999998888888899
Q ss_pred EEEEEeCCCC
Q 001380 914 IIRYLDLNKE 923 (1089)
Q Consensus 914 ~I~~~~~~~~ 923 (1089)
.|+.+++...
T Consensus 288 ~i~~~~~~~~ 297 (337)
T 1gxr_A 288 LLNAWRTPYG 297 (337)
T ss_dssp EEEEEETTTC
T ss_pred cEEEEECCCC
Confidence 9999999876
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=4.5e-07 Score=102.66 Aligned_cols=240 Identities=11% Similarity=0.081 Sum_probs=162.3
Q ss_pred ceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEe--cCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCE
Q 001380 604 GKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIG--SSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHA 680 (1089)
Q Consensus 604 ~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~--~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~ 680 (1089)
..+++.+ +++|..+ ...+.|.++|.+ |+.+.... ..+. -.....|+++++|+.|+. -..++.
T Consensus 86 ~~~~~s~-d~~l~~~-s~dg~v~lWd~~~~~~~~~~~~~~~~H------------~~~V~~v~~spdg~~l~s-gs~d~~ 150 (344)
T 4gqb_B 86 ADLTWVG-ERGILVA-SDSGAVELWELDENETLIVSKFCKYEH------------DDIVSTVSVLSSGTQAVS-GSKDIC 150 (344)
T ss_dssp EEEEEET-TTEEEEE-ETTSEEEEEEECTTSSCEEEEEEEECC------------SSCEEEEEECTTSSEEEE-EETTSC
T ss_pred EEEEEeC-CCeEEEE-ECCCEEEEEeccCCCceeEeeccccCC------------CCCEEEEEECCCCCEEEE-EeCCCe
Confidence 4677886 6666544 557899999876 44332221 1111 123578999999995544 446788
Q ss_pred EEEEECCCCeEEE-EecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCcc
Q 001380 681 LREIDFVNDTVRT-LAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYE 759 (1089)
Q Consensus 681 I~~~d~~~g~v~~-~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~ 759 (1089)
|+.+|..++.... +.+.. ...+.+++++++..++++....+.|..||..++.........
T Consensus 151 i~iwd~~~~~~~~~~~~h~-----------------~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-- 211 (344)
T 4gqb_B 151 IKVWDLAQQVVLSSYRAHA-----------------AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS-- 211 (344)
T ss_dssp EEEEETTTTEEEEEECCCS-----------------SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----
T ss_pred EEEEECCCCcEEEEEcCcC-----------------CceEEEEecCCCCCceeeeccccccccccccccceeeeeecc--
Confidence 9999998876543 43211 245789999988778888777889999998876543221100
Q ss_pred ccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCe-EEEecCCCCCCCCccccCCCCCccccccccC
Q 001380 760 RNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGS-RLLAGGDPIFPDNLFKFGDRDGMGSEVLLQH 838 (1089)
Q Consensus 760 ~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~-~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~ 838 (1089)
..-..+..++++++++.++++-+.++.|+.++..++.. ..+.+. -..
T Consensus 212 ----------~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h----------------------~~~ 259 (344)
T 4gqb_B 212 ----------APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVH----------------------SQC 259 (344)
T ss_dssp ------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECC----------------------SSC
T ss_pred ----------eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCC----------------------CCC
Confidence 11123568899997778888888889999999876542 233221 113
Q ss_pred ceEEEEccCC-cEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEEEECCCCEEE
Q 001380 839 PLGVYCAKNG-QIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADTNNNIIR 916 (1089)
Q Consensus 839 P~gva~~~~G-~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~~n~~I~ 916 (1089)
-.+|+++++| +++++-+..+.|+.+|..++.+.++.+. -....++++.++|. |+++-..+++|+
T Consensus 260 v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H--------------~~~V~~v~~sp~~~~llas~s~D~~v~ 325 (344)
T 4gqb_B 260 VTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAH--------------RDFVRDATWSPLNHSLLTTVGWDHQVV 325 (344)
T ss_dssp EEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCC--------------SSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred EEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCC--------------CCCEEEEEEeCCCCeEEEEEcCCCeEE
Confidence 4678999988 5667777889999999999887766432 23367889988774 777777789999
Q ss_pred EEeCCCC
Q 001380 917 YLDLNKE 923 (1089)
Q Consensus 917 ~~~~~~~ 923 (1089)
..++..+
T Consensus 326 ~w~v~~~ 332 (344)
T 4gqb_B 326 HHVVPTE 332 (344)
T ss_dssp EEECCC-
T ss_pred EEECCCC
Confidence 9988765
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A | Back alignment and structure |
|---|
Probab=98.86 E-value=4.7e-09 Score=124.89 Aligned_cols=102 Identities=16% Similarity=0.246 Sum_probs=80.7
Q ss_pred CCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCC-CEEEEEEeCCCCCChhcHHHHHHHHHHcCCccc
Q 001380 440 LNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDM-PFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHP 518 (1089)
Q Consensus 440 ~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~-~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (1089)
++++.+.....-.+|+|||+|||+||++|+.++|.|.+++++|++. ++.++.|..
T Consensus 357 ~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~------------------------ 412 (481)
T 3f8u_A 357 VVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDA------------------------ 412 (481)
T ss_dssp ECTTTHHHHHTCTTCEEEEEEECTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEET------------------------
T ss_pred ecccCHHHHhhcCCCcEEEEEecCcChhHHHhhHHHHHHHHHhccCCCEEEEEEEC------------------------
Confidence 3555543311224899999999999999999999999999999874 799988853
Q ss_pred eeecCChhHHHHhCCCceeEEEEECCCCcE-EEEecCCCchhhHHHHHHHHH
Q 001380 519 VVNDGDMNLWRELGVNSWPTFAVVGPNGKL-LAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 519 v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i-~~~~~G~~~~~~l~~~l~~~l 569 (1089)
+. .++++.|+|.++||+++++++|++ ..++.|..+.+.+.++|++.+
T Consensus 413 ---~~-~~~~~~~~v~~~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~~ 460 (481)
T 3f8u_A 413 ---TA-NDVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQREA 460 (481)
T ss_dssp ---TS-SCCCTTCCCCSSSEEEEECTTCTTSCEECCSCCSHHHHHHHHHHHC
T ss_pred ---Cc-hhhHhhCCCcccCEEEEEeCCCeEeeeEeCCCCCHHHHHHHHHHhc
Confidence 11 257788999999999999888874 677889888888888877644
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=5.4e-07 Score=101.45 Aligned_cols=216 Identities=13% Similarity=0.157 Sum_probs=147.8
Q ss_pred CCCCCCCceEEEeecCCeEEEEeCCC---------------CEEEEEeCC-C--CEEEEEecCCCCCCCCCCCCccccCC
Q 001380 597 TSPLKFPGKLAIDILNNRLFISDSNH---------------NRIVVTDLD-G--NFIVQIGSSGEEGLRDGSFDDATFNR 658 (1089)
Q Consensus 597 ~~~l~~P~~vavd~~~g~L~vsd~~~---------------~~I~~~~~~-g--~~~~~i~~~g~~g~~dG~~~~~~f~~ 658 (1089)
...|....++.+|. .++|||.|+|. -+|+.+|+. + +.++++.-+... ..+. ..
T Consensus 83 ~~~lvsV~~v~iD~-~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~------~~~~--S~ 153 (381)
T 3q6k_A 83 GKELTSIYQPVIDD-CRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRL------VEKP--TY 153 (381)
T ss_dssp SCSSSCEEEEEECT-TCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGG------CCCG--GG
T ss_pred ccceEEeeEEEEcC-CCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHh------cccC--Cc
Confidence 46789999999997 99999999872 269999987 5 678777654211 1111 24
Q ss_pred cceeEEe-e--C----CCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCC--Ccccc-cccCCceeEEEecC--
Q 001380 659 PQGLAYN-A--K----KNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGG--EKGTS-QLLNSPWDVCYKPI-- 726 (1089)
Q Consensus 659 P~gla~d-~--~----g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~--~~~~~-~~l~~P~~la~~~~-- 726 (1089)
-+.|++| . . +.++|++|.+...|.++|+.++...++....... +..+. ..+.. +....-.|||++|+
T Consensus 154 l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p-d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~ 232 (381)
T 3q6k_A 154 FGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA-ERPTKFDYGGKEYEFKAGIFGITLGDRDS 232 (381)
T ss_dssp EEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC-CSCEEEEETTEEEEECCCEEEEEECCCCT
T ss_pred cceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc-ccCcceEECCEEeEeccCceEEEecCCcC
Confidence 5789998 2 2 5679999999999999999999888876321111 10000 00111 11236678999998
Q ss_pred --CCEEEEEECCCcEEEEEECC---CC----eEEEEeCCCccccCCCCCCCCccccCCceEEEc-CCCCEEEEEeCCCCe
Q 001380 727 --NEKVYIAMAGQHQIWEHSTV---DG----VTRAFSGDGYERNLNGSSSLNTSFAQPSGISLS-PDFMEIYVADSESSS 796 (1089)
Q Consensus 727 --g~~lyvad~~~~~I~~~~~~---~g----~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~-~~g~~lyvad~~~~~ 796 (1089)
+..||+.-..+..++.+..+ +. .++.+... ....+..++++| .+| .||+++.+.++
T Consensus 233 ~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~k-------------g~~s~~~~~~~D~~~G-~ly~~~~~~~a 298 (381)
T 3q6k_A 233 EGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNR-------------GKYNDAIALAYDPKTK-VIFFAEANTKQ 298 (381)
T ss_dssp TSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEEC-------------CTTCCEEEEEECTTTC-EEEEEESSSSE
T ss_pred CCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeec-------------CCCCCcceEEEeCCCC-eEEEEeccCCe
Confidence 78999999998899888631 11 11222110 011345578887 555 99999999999
Q ss_pred EEEEEcCC-----CCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCC
Q 001380 797 IRALNLKT-----GGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSY 856 (1089)
Q Consensus 797 I~~~~~~~-----~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~ 856 (1089)
|.++++++ +...+++. +.+|+.|.++.++.+|.|||....
T Consensus 299 I~~w~~~~~~~~~~n~~~l~~--------------------d~~l~~pd~~~i~~~g~Lwv~sn~ 343 (381)
T 3q6k_A 299 VSCWNTQKMPLRMKNTDVVYT--------------------SSRFVFGTDISVDSKGGLWFMSNG 343 (381)
T ss_dssp EEEEETTSCSBCGGGEEEEEE--------------------CTTCCSEEEEEECTTSCEEEEECS
T ss_pred EEEEeCCCCccccCceEEEEE--------------------CCCccccCeEEECCCCeEEEEECc
Confidence 99999875 22344432 125899999999999999998744
|
| >2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.3e-08 Score=99.87 Aligned_cols=95 Identities=13% Similarity=0.163 Sum_probs=72.6
Q ss_pred CCCEEEEEEecCCCcchhhhh------hhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCCh
Q 001380 452 KGKVVVLDFWTYCCINCMHVL------PDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDM 525 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~------p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~ 525 (1089)
.+|+|||+|++.||.+|+.+. |.+.++.++ ++++|.+.++ + +...
T Consensus 41 ~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~----~fv~v~~d~~-----~--------------------~~~~ 91 (153)
T 2dlx_A 41 QNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE----HFIFWQVYHD-----S--------------------EEGQ 91 (153)
T ss_dssp HTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH----TEEEEEEESS-----S--------------------HHHH
T ss_pred cCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHc----CeEEEEEecC-----C--------------------HhHH
Confidence 489999999999999999874 445544433 5888888541 1 1123
Q ss_pred hHHHHhCCCceeEEEEECCC-CcEEEEecCCCchhhHHHHHHHHHHHhcccc
Q 001380 526 NLWRELGVNSWPTFAVVGPN-GKLLAQLAGEGHRKDLDDLVEAALLFYGKKK 576 (1089)
Q Consensus 526 ~l~~~~~v~~~Pt~~lid~~-G~i~~~~~G~~~~~~l~~~l~~~l~~~~~~~ 576 (1089)
.+.+.|++.++|+++++|++ |+.+..+.| .+.+++.+.|+..++.++..+
T Consensus 92 ~l~~~y~v~~~P~~~fld~~~G~~l~~~~g-~~~~~fl~~L~~~l~~~~~~~ 142 (153)
T 2dlx_A 92 RYIQFYKLGDFPYVSILDPRTGQKLVEWHQ-LDVSSFLDQVTGFLGEHGQLD 142 (153)
T ss_dssp HHHHHHTCCSSSEEEEECTTTCCCCEEESS-CCHHHHHHHHHHHHHHTCSCS
T ss_pred HHHHHcCCCCCCEEEEEeCCCCcEeeecCC-CCHHHHHHHHHHHHHhcCCCC
Confidence 56678999999999999998 877777766 788999999988888776543
|
| >3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.6e-08 Score=102.61 Aligned_cols=119 Identities=19% Similarity=0.312 Sum_probs=87.5
Q ss_pred ceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCC------------------------
Q 001380 443 APLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFD------------------------ 498 (1089)
Q Consensus 443 ~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~------------------------ 498 (1089)
....+ ....+|++|+.||.+|||+|+...|.|.++.+++++ +.++-++++-..
T Consensus 13 ~~~~~-G~~~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~--v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~ 89 (175)
T 3gyk_A 13 NAPVL-GNPEGDVTVVEFFDYNCPYCRRAMAEVQGLVDADPN--VRLVYREWPILGEGSDFAARAALAARQQGKYEAFHW 89 (175)
T ss_dssp TSCEE-ECTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT--EEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHH
T ss_pred CCCCc-CCCCCCEEEEEEECCCCccHHHHHHHHHHHHHhCCC--EEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHH
Confidence 34445 566789999999999999999999999999999875 555555443211
Q ss_pred ------ChhcHHHHHHHHHHcCCcccee------------ecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhh
Q 001380 499 ------NEKDLEAIRNAVLRYGISHPVV------------NDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKD 560 (1089)
Q Consensus 499 ------~~~~~~~~~~~~~~~~~~~~v~------------~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~ 560 (1089)
..-+.+.+.+++++.|++...+ .+.+.++++++||.++|++++ +|+ .+.|....+.
T Consensus 90 ~lf~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~i---~g~---~~~G~~~~~~ 163 (175)
T 3gyk_A 90 ALMGMSGKANETGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGFNGTPSFVV---EDA---LVPGFVEQSQ 163 (175)
T ss_dssp HHHTCSSCCSHHHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTCCSSSEEEE---TTE---EECSCCCHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCccCCEEEE---CCE---EeeCCCCHHH
Confidence 0124556777778888875432 234567889999999998876 454 4568888999
Q ss_pred HHHHHHHHHH
Q 001380 561 LDDLVEAALL 570 (1089)
Q Consensus 561 l~~~l~~~l~ 570 (1089)
+.+.|+++++
T Consensus 164 l~~~i~~~l~ 173 (175)
T 3gyk_A 164 LQDAVDRARK 173 (175)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988775
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A | Back alignment and structure |
|---|
Probab=98.84 E-value=5.9e-09 Score=124.77 Aligned_cols=90 Identities=12% Similarity=0.300 Sum_probs=79.7
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.++++||+|||+||++|+.+.|.+.++++++++.++.++.|.+ +.+..+++.|
T Consensus 30 ~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~---------------------------~~~~~l~~~~ 82 (504)
T 2b5e_A 30 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDC---------------------------TENQDLCMEH 82 (504)
T ss_dssp TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEET---------------------------TTCHHHHHHT
T ss_pred cCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEEC---------------------------CCCHHHHHhc
Confidence 5799999999999999999999999999999876799999965 4567899999
Q ss_pred CCCceeEEEEECCCCcE--EEEecCCCchhhHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKL--LAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i--~~~~~G~~~~~~l~~~l~~~l 569 (1089)
+|.++||++++ ++|+. ...+.|..+.+.+.+++...+
T Consensus 83 ~v~~~Pt~~~~-~~g~~~~~~~~~G~~~~~~l~~~l~~~~ 121 (504)
T 2b5e_A 83 NIPGFPSLKIF-KNSDVNNSIDYEGPRTAEAIVQFMIKQS 121 (504)
T ss_dssp TCCSSSEEEEE-ETTCTTCEEECCSCCSHHHHHHHHHHHT
T ss_pred CCCcCCEEEEE-eCCccccceeecCCCCHHHHHHHHHHhc
Confidence 99999999999 56776 778999989999988887765
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.83 E-value=2.5e-06 Score=95.32 Aligned_cols=238 Identities=15% Similarity=0.167 Sum_probs=158.7
Q ss_pred ceEEEeec---CCeEEEEeCCCCEEEEEeCCCCEE-EEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCC
Q 001380 604 GKLAIDIL---NNRLFISDSNHNRIVVTDLDGNFI-VQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENH 679 (1089)
Q Consensus 604 ~~vavd~~---~g~L~vsd~~~~~I~~~~~~g~~~-~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~ 679 (1089)
..+++.+. ++.++++-...+.|.+++.+.... ......+. -..-..+++.+++. +.++-..++
T Consensus 36 ~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh------------~~~v~~~~~~~~~~-~l~s~s~D~ 102 (321)
T 3ow8_A 36 WSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGH------------QLGVVSVDISHTLP-IAASSSLDA 102 (321)
T ss_dssp EEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCC------------SSCEEEEEECSSSS-EEEEEETTS
T ss_pred EEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccC------------CCCEEEEEECCCCC-EEEEEeCCC
Confidence 45666542 456788888888999998764332 22111111 12346788888888 555656788
Q ss_pred EEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEE-EEeCCCc
Q 001380 680 ALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTR-AFSGDGY 758 (1089)
Q Consensus 680 ~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~-~~~g~g~ 758 (1089)
.|+.+|+.++........+. ...+.++++|++..| ++....+.|..|+...+... .+.+.+
T Consensus 103 ~i~lWd~~~~~~~~~~~~~~----------------~~~~~~~~spdg~~l-~~g~~dg~v~i~~~~~~~~~~~~~~~~- 164 (321)
T 3ow8_A 103 HIRLWDLENGKQIKSIDAGP----------------VDAWTLAFSPDSQYL-ATGTHVGKVNIFGVESGKKEYSLDTRG- 164 (321)
T ss_dssp EEEEEETTTTEEEEEEECCT----------------TCCCCEEECTTSSEE-EEECTTSEEEEEETTTCSEEEEEECSS-
T ss_pred cEEEEECCCCCEEEEEeCCC----------------ccEEEEEECCCCCEE-EEEcCCCcEEEEEcCCCceeEEecCCC-
Confidence 99999998876443332111 145679999998554 45556788999998876543 333211
Q ss_pred cccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEE-EecCCCCCCCCccccCCCCCcccccccc
Q 001380 759 ERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRL-LAGGDPIFPDNLFKFGDRDGMGSEVLLQ 837 (1089)
Q Consensus 759 ~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~-~~g~~~~~~~~l~~~g~~dg~~~~~~l~ 837 (1089)
.....++++|+|+.| ++-+..+.|+.++..++.... +.+. -.
T Consensus 165 --------------~~v~~~~~spdg~~l-asg~~dg~i~iwd~~~~~~~~~~~~h----------------------~~ 207 (321)
T 3ow8_A 165 --------------KFILSIAYSPDGKYL-ASGAIDGIINIFDIATGKLLHTLEGH----------------------AM 207 (321)
T ss_dssp --------------SCEEEEEECTTSSEE-EEEETTSCEEEEETTTTEEEEEECCC----------------------SS
T ss_pred --------------ceEEEEEECCCCCEE-EEEcCCCeEEEEECCCCcEEEEEccc----------------------CC
Confidence 134689999999554 555567899999988665432 2111 01
Q ss_pred CceEEEEccCCcEEEEeCCCCEEEEEeCCCCeE-EEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEE
Q 001380 838 HPLGVYCAKNGQIYVADSYNHKIKKLDPASNRV-STLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIR 916 (1089)
Q Consensus 838 ~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v-~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~ 916 (1089)
....++++++|+++++-+..+.|+.+|..++.+ .++.+ .-.....+++.++|+.+++-..++.|+
T Consensus 208 ~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--------------h~~~v~~~~~sp~~~~l~s~s~D~~v~ 273 (321)
T 3ow8_A 208 PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG--------------HASWVLNVAFCPDDTHFVSSSSDKSVK 273 (321)
T ss_dssp CCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECC--------------CSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred ceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcC--------------CCCceEEEEECCCCCEEEEEeCCCcEE
Confidence 246789999999888888899999999876554 34432 123356889999998888888899999
Q ss_pred EEeCCCC
Q 001380 917 YLDLNKE 923 (1089)
Q Consensus 917 ~~~~~~~ 923 (1089)
.+++...
T Consensus 274 iwd~~~~ 280 (321)
T 3ow8_A 274 VWDVGTR 280 (321)
T ss_dssp EEETTTT
T ss_pred EEeCCCC
Confidence 9999876
|
| >3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.81 E-value=6.5e-10 Score=122.64 Aligned_cols=115 Identities=13% Similarity=0.124 Sum_probs=78.6
Q ss_pred HhCCCeEEEEcCCChHhHHHHHHHCC--CCCCCccEEEEcC----CccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhh
Q 001380 178 KSKGLKVAVASSADRIKVDANLAAAG--LPVSMFDAIVSAD----AFENLKPAPDIFLSASKILNVPTSECIVIEDALAG 251 (1089)
Q Consensus 178 k~~Gi~vaIvSn~~~~~~~~~l~~~g--l~~~~fd~i~~~~----~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~D 251 (1089)
...++..+++++...+....+.+.+. +. ..+..+.+.. -...+.+|+..++.+++++|++++++++|||+.||
T Consensus 159 ~~~~i~ki~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~s~~~~~ei~~~~~~K~~al~~l~~~lgi~~~~~ia~GD~~ND 237 (285)
T 3pgv_A 159 DPQGISKVFFTCEDHEHLLPLEQAMNARWG-DRVNVSFSTLTCLEVMAGGVSKGHALEAVAKMLGYTLSDCIAFGDGMND 237 (285)
T ss_dssp CCSSEEEEEEECSCHHHHHHHHHHHHHHHG-GGEEEEESSTTEEEEEETTCSHHHHHHHHHHHTTCCGGGEEEEECSGGG
T ss_pred CCCCceEEEEeCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCceEEEecCCCChHHHHHHHHHHhCCCHHHEEEECCcHhh
Confidence 34455556666555555544444332 11 2244444432 23456778999999999999999999999999999
Q ss_pred HHHHHHcCCeEEEEcCCCCHHHHhhc-CCcEEecCcccCCHHHHHh
Q 001380 252 VQAAKAAQMRCIAVTTTLSEERLKEA-SPSLIRKEIGSVSLNDILT 296 (1089)
Q Consensus 252 i~aA~~aG~~~i~V~~g~~~~~l~~~-~~d~vi~dl~el~i~~ll~ 296 (1089)
++|++.+| +.|..+...+++++. ...+++.+..+=.+...|.
T Consensus 238 i~ml~~ag---~~vAm~Na~~~vk~~A~~~~v~~sn~edGva~~i~ 280 (285)
T 3pgv_A 238 AEMLSMAG---KGCIMANAHQRLKDLHPELEVIGSNADDAVPRYLR 280 (285)
T ss_dssp HHHHHHSS---EEEECTTSCHHHHHHCTTSEECCCGGGTHHHHHHH
T ss_pred HHHHHhcC---CEEEccCCCHHHHHhCCCCEecccCCcchHHHHHH
Confidence 99999999 677777766777664 2236777777766666554
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A | Back alignment and structure |
|---|
Probab=98.81 E-value=7.4e-09 Score=123.22 Aligned_cols=89 Identities=15% Similarity=0.352 Sum_probs=79.1
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.++++||+|||+||++|+.+.|.+.++++++++. +.++.|.+ +.+..+++.|
T Consensus 20 ~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~-v~~~~vd~---------------------------~~~~~l~~~~ 71 (481)
T 3f8u_A 20 SAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGI-VPLAKVDC---------------------------TANTNTCNKY 71 (481)
T ss_dssp SSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CCEEEEET---------------------------TTCHHHHHHT
T ss_pred CCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCc-eEEEEEEC---------------------------CCCHHHHHhc
Confidence 3489999999999999999999999999999876 77888865 4567899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
+|.++||++++ ++|+.+..+.|..+.+.+.+++...+
T Consensus 72 ~v~~~Ptl~~~-~~g~~~~~~~G~~~~~~l~~~~~~~~ 108 (481)
T 3f8u_A 72 GVSGYPTLKIF-RDGEEAGAYDGPRTADGIVSHLKKQA 108 (481)
T ss_dssp TCCEESEEEEE-ETTEEEEECCSCSSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEE-eCCceeeeecCccCHHHHHHHHHhhc
Confidence 99999999999 88988889999999999988887665
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A | Back alignment and structure |
|---|
Probab=98.80 E-value=1.3e-08 Score=116.37 Aligned_cols=86 Identities=22% Similarity=0.412 Sum_probs=71.3
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCC-CEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDM-PFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRE 530 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~-~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~ 530 (1089)
.+|++||+|||+||++|+.+.|.|.+++++|++. ++.++.|.. +...++.
T Consensus 266 ~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~-----------------------------~~~~~~~ 316 (361)
T 3uem_A 266 EKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDS-----------------------------TANEVEA 316 (361)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEET-----------------------------TTCBCSS
T ss_pred CCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEEC-----------------------------Cccchhh
Confidence 6899999999999999999999999999999864 688888843 1112567
Q ss_pred hCCCceeEEEEECCC-CcEEEEecCCCchhhHHHHHH
Q 001380 531 LGVNSWPTFAVVGPN-GKLLAQLAGEGHRKDLDDLVE 566 (1089)
Q Consensus 531 ~~v~~~Pt~~lid~~-G~i~~~~~G~~~~~~l~~~l~ 566 (1089)
|+|.++|++++++++ |+...++.|..+.+.+.++|+
T Consensus 317 ~~v~~~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~l~ 353 (361)
T 3uem_A 317 VKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFLE 353 (361)
T ss_dssp CCCCSSSEEEEECSSSSCCCEECCSCSSHHHHHHHHT
T ss_pred cCCcccCeEEEEECCCCcceeEecCCCCHHHHHHHHH
Confidence 999999999999655 677788899888888777764
|
| >1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-08 Score=107.57 Aligned_cols=115 Identities=16% Similarity=0.201 Sum_probs=80.4
Q ss_pred cccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCC-Chh-------------cHHHHHHHHHHcC
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFD-NEK-------------DLEAIRNAVLRYG 514 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~-~~~-------------~~~~~~~~~~~~~ 514 (1089)
...++|++|+.||++|||+|+.++|.|.++.++ ++.++.++.+-.. +.+ ....+.+++...+
T Consensus 82 g~~~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~----~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~ 157 (216)
T 1eej_A 82 KAPQEKHVITVFTDITCGYCHKLHEQMADYNAL----GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKS 157 (216)
T ss_dssp CCTTCCEEEEEEECTTCHHHHHHHTTHHHHHHT----TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCC
T ss_pred cCCCCCEEEEEEECCCCHHHHHHHHHHHHHHhC----CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCC
Confidence 445789999999999999999999999998763 5778777653211 111 1223444444444
Q ss_pred Ccc---ceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHHh
Q 001380 515 ISH---PVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFY 572 (1089)
Q Consensus 515 ~~~---~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~~ 572 (1089)
++. ....+.+.++++.|||.++|++++. +|+ .+.|....+.+.++|+..++..
T Consensus 158 ~~~~~~~~~v~~~~~l~~~~gV~gtPt~v~~--dG~---~~~G~~~~~~l~~~l~~~~~~~ 213 (216)
T 1eej_A 158 VAPASCDVDIADHYALGVQLGVSGTPAVVLS--NGT---LVPGYQPPKEMKEFLDEHQKMT 213 (216)
T ss_dssp CCCCCCSCCHHHHHHHHHHHTCCSSSEEECT--TSC---EEESCCCHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHcCCCccCEEEEc--CCe---EecCCCCHHHHHHHHHHhhhhc
Confidence 442 2233456789999999999998654 454 4568888899999998876653
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.4e-06 Score=94.67 Aligned_cols=220 Identities=11% Similarity=0.123 Sum_probs=143.8
Q ss_pred CCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCC-CeEEEEecCCC
Q 001380 621 NHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVN-DTVRTLAGNGT 699 (1089)
Q Consensus 621 ~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~-g~v~~~ag~g~ 699 (1089)
..+.|.+++..+.....+... . .....++++|+|+.|+++. ++.|+.+|..+ +....+.....
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~~-~-------------~~v~~~~~spdg~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~ 83 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQT-P-------------ELFEAPNWSPDGKYLLLNS--EGLLYRLSLAGDPSPEKVDTGFA 83 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEEE-S-------------SCCEEEEECTTSSEEEEEE--TTEEEEEESSSCCSCEECCCTTC
T ss_pred cceeEEEEeCCCCceeeeccC-C-------------cceEeeEECCCCCEEEEEc--CCeEEEEeCCCCCCceEeccccc
Confidence 456788888765444333222 1 1457999999999777765 67999999988 77665542110
Q ss_pred CCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC---CCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCc
Q 001380 700 KGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA---GQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPS 776 (1089)
Q Consensus 700 ~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~---~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~ 776 (1089)
-..+.+++++|++..|+++.. +..+||.++..++....+... ....
T Consensus 84 ---------------~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----------------~~~~ 132 (297)
T 2ojh_A 84 ---------------TICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKN----------------LPSY 132 (297)
T ss_dssp ---------------CCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSS----------------SSEE
T ss_pred ---------------cccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecC----------------CCcc
Confidence 124578999999988888773 367999999887765554321 1256
Q ss_pred eEEEcCCCCEEEEEeCCCC--eEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEEE
Q 001380 777 GISLSPDFMEIYVADSESS--SIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVA 853 (1089)
Q Consensus 777 glav~~~g~~lyvad~~~~--~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVa 853 (1089)
.++++++|+.|+++....+ .|..++..++....+... -..+..++++++|+ ++++
T Consensus 133 ~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~----------------------~~~~~~~~~s~dg~~l~~~ 190 (297)
T 2ojh_A 133 WHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHG----------------------EGRNDGPDYSPDGRWIYFN 190 (297)
T ss_dssp EEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCS----------------------SSCEEEEEECTTSSEEEEE
T ss_pred ceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccC----------------------CCccccceECCCCCEEEEE
Confidence 7899999988886665555 455555665554433211 12357789999996 5655
Q ss_pred e--CCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEEEEC----------CCCEEEEEeC
Q 001380 854 D--SYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADT----------NNNIIRYLDL 920 (1089)
Q Consensus 854 D--~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~----------~n~~I~~~~~ 920 (1089)
. ....+|..++..++.+..+.... .....++++++|+ |+++.. ...+|.++++
T Consensus 191 ~~~~~~~~i~~~~~~~~~~~~~~~~~--------------~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~ 256 (297)
T 2ojh_A 191 SSRTGQMQIWRVRVDGSSVERITDSA--------------YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDM 256 (297)
T ss_dssp ECTTSSCEEEEEETTSSCEEECCCCS--------------EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEET
T ss_pred ecCCCCccEEEECCCCCCcEEEecCC--------------cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEec
Confidence 4 34567888887777776664321 1245678888886 444433 2267999999
Q ss_pred CCC
Q 001380 921 NKE 923 (1089)
Q Consensus 921 ~~~ 923 (1089)
.+.
T Consensus 257 ~~~ 259 (297)
T 2ojh_A 257 DGG 259 (297)
T ss_dssp TSC
T ss_pred CCC
Confidence 876
|
| >3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.5e-08 Score=101.43 Aligned_cols=91 Identities=14% Similarity=0.159 Sum_probs=70.1
Q ss_pred CCCEEEEEEec-------CCCcchhhhhhhHHHHHHHcCC----CCEEEEEEeCCCCCChhcHHHHHHHHHHcCCcccee
Q 001380 452 KGKVVVLDFWT-------YCCINCMHVLPDLEFLEKKYKD----MPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVV 520 (1089)
Q Consensus 452 ~gk~vll~Fwa-------~wC~~C~~~~p~l~~l~~~~~~----~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 520 (1089)
++.+|||+||| .||++|+...|.+++++++|.. ..+.+.-|.+
T Consensus 36 ~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~-------------------------- 89 (178)
T 3ga4_A 36 PGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDV-------------------------- 89 (178)
T ss_dssp TTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEET--------------------------
T ss_pred CCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEEC--------------------------
Confidence 45689999999 4999999999999999999861 3488887754
Q ss_pred ecCChhHHHHhCCCceeEEEEECCCCcEE-----------EEe--c-C-CCchhhHHHHHHHHH
Q 001380 521 NDGDMNLWRELGVNSWPTFAVVGPNGKLL-----------AQL--A-G-EGHRKDLDDLVEAAL 569 (1089)
Q Consensus 521 ~d~~~~l~~~~~v~~~Pt~~lid~~G~i~-----------~~~--~-G-~~~~~~l~~~l~~~l 569 (1089)
|.+.+++++|||+++||++++-+.+..- ..+ . | ....+.+.++|.+.+
T Consensus 90 -d~~~~la~~~~I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t 152 (178)
T 3ga4_A 90 -NEVPQLVKDLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKIL 152 (178)
T ss_dssp -TTCHHHHHHTTCCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHH
T ss_pred -ccCHHHHHHcCCCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhc
Confidence 6788999999999999999995444322 222 2 3 556777777776544
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.77 E-value=4.3e-06 Score=92.44 Aligned_cols=201 Identities=13% Similarity=0.230 Sum_probs=129.9
Q ss_pred CCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeC----CC---EEEEEECC--CCEEE
Q 001380 612 NNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAK----KN---LLYVADTE--NHALR 682 (1089)
Q Consensus 612 ~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~----g~---~lyVaD~~--n~~I~ 682 (1089)
...++|+....+.+.++|.+|+.+..+..+ +++++.+-+. |. .+|+++.. +++|+
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~G~~l~~~~~g----------------~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~ 102 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLDGKMLHSYNTG----------------KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIE 102 (355)
T ss_dssp GGCEEEEEETTTEEEEEETTSCEEEEECCS----------------CEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcCCCcEEEEccCC----------------CcccEEEecccccCCceEeEEEEeCCCCCCCeEE
Confidence 344566655567899999999999887542 4566666552 21 57999998 99998
Q ss_pred EE--ECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEE--ecCCC--EEEEEECCCcEEEEEEC---CCCe----
Q 001380 683 EI--DFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCY--KPINE--KVYIAMAGQHQIWEHST---VDGV---- 749 (1089)
Q Consensus 683 ~~--d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~--~~~g~--~lyvad~~~~~I~~~~~---~~g~---- 749 (1089)
.| |++++.++.+..... .....+..|.|+|+ ++.++ ++||.+.. +.++.|.. .+|.
T Consensus 103 vf~iDp~~~~l~~i~~~~~----------pv~t~~~~pyGlcly~~~~~g~~yafV~~k~-G~~~q~~l~~~~~g~~~~~ 171 (355)
T 3amr_A 103 IYAIDGKNGTLQSMTDPDH----------PIATAINEVYGFTLYHSQKTGKYYAMVTGKE-GEFEQYELKADKNGYISGK 171 (355)
T ss_dssp EEEECTTTCCEEECSCTTS----------CEECCCSSCCCEEEEECTTTCCEEEEEECSS-SEEEEEEEEECTTSCEEEE
T ss_pred EEEECCCCCceeecccccc----------CcCCCCCCeeEEEEEecCCCCcEEEEEECCC-CeEEEEEEEeCCCCcccce
Confidence 88 556777766642100 00112468999999 77655 46666654 67766554 2332
Q ss_pred -EEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcC--CCCe-EEEecCCCCCCCCccccC
Q 001380 750 -TRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLK--TGGS-RLLAGGDPIFPDNLFKFG 825 (1089)
Q Consensus 750 -~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~--~~~~-~~~~g~~~~~~~~l~~~g 825 (1089)
++.|.- -.+|.|+++|+..+.|||++...+ |.+|+.+ ++.. +.+.- ++
T Consensus 172 lVR~f~l----------------gsq~EgcvvDd~~g~Lyv~eEd~G-Iw~~da~p~~~~~~~~v~~-----------~~ 223 (355)
T 3amr_A 172 KVRAFKM----------------NSQTEGMAADDEYGRLYIAEEDEA-IWKFSAEPDGGSNGTVIDR-----------AD 223 (355)
T ss_dssp EEEEEEC----------------SSCEEEEEEETTTTEEEEEETTTE-EEEEECSTTSCSCCEEEEE-----------BS
T ss_pred EEEEecC----------------CCCcceEEEcCCCCeEEEecccce-EEEEeCCcCCCCCceEEEE-----------ec
Confidence 233331 127899999998789999998755 9999944 3222 11210 00
Q ss_pred CCCCccccccc-cCceEEEEc--cC--CcEEEEeCCCCEEEEEeCC--CCeEEEEe
Q 001380 826 DRDGMGSEVLL-QHPLGVYCA--KN--GQIYVADSYNHKIKKLDPA--SNRVSTLA 874 (1089)
Q Consensus 826 ~~dg~~~~~~l-~~P~gva~~--~~--G~lyVaD~~n~~I~~~d~~--~~~v~t~~ 874 (1089)
. ..| ..+.||++. ++ |.|++++-+++...+||.. ...+.++.
T Consensus 224 ~-------g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 224 G-------RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp S-------SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred C-------CccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 0 012 268999995 33 4699999999999999985 23455553
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=98.77 E-value=8.3e-07 Score=103.25 Aligned_cols=203 Identities=16% Similarity=0.187 Sum_probs=140.4
Q ss_pred CceEEEeecCCeEEEEeCC--CCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC--C
Q 001380 603 PGKLAIDILNNRLFISDSN--HNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT--E 677 (1089)
Q Consensus 603 P~~vavd~~~g~L~vsd~~--~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~--~ 677 (1089)
...++++|.+..|+.+... ...|.++|.. |+.. .+... . .....++++|+|+.|+++.. +
T Consensus 181 v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~-~-------------~~~~~~~~spdg~~la~~~~~~g 245 (415)
T 2hqs_A 181 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASF-P-------------RHNGAPAFSPDGSKLAFALSKTG 245 (415)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECC-S-------------SCEEEEEECTTSSEEEEEECTTS
T ss_pred ceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecC-C-------------CcccCEEEcCCCCEEEEEEecCC
Confidence 3467888855566655543 3689999987 4443 33322 1 14578999999997776543 3
Q ss_pred CCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC--CCcEEEEEECCCCeEEEEeC
Q 001380 678 NHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA--GQHQIWEHSTVDGVTRAFSG 755 (1089)
Q Consensus 678 n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~--~~~~I~~~~~~~g~~~~~~g 755 (1089)
+..|+.+|+.++....+.+.. .....++|+|+|..|+++.. +..+||.+|..++.+..+..
T Consensus 246 ~~~i~~~d~~~~~~~~l~~~~-----------------~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~ 308 (415)
T 2hqs_A 246 SLNLYVMDLASGQIRQVTDGR-----------------SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITW 308 (415)
T ss_dssp SCEEEEEETTTCCEEECCCCS-----------------SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCC
T ss_pred CceEEEEECCCCCEEeCcCCC-----------------CcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEec
Confidence 457999999988887765322 14567899999988887764 34489999998887655432
Q ss_pred CCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCC--CCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCcccc
Q 001380 756 DGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSE--SSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSE 833 (1089)
Q Consensus 756 ~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~--~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~ 833 (1089)
.+ .....++++|+|+.|+++... ...|+.++..++....+..+
T Consensus 309 ~~---------------~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~-------------------- 353 (415)
T 2hqs_A 309 EG---------------SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSST-------------------- 353 (415)
T ss_dssp SS---------------SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCS--------------------
T ss_pred CC---------------CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCC--------------------
Confidence 11 134578999999888887754 45899999987776544221
Q ss_pred ccccCceEEEEccCCc-EEEEeCCCC--EEEEEeCCCCeEEEEec
Q 001380 834 VLLQHPLGVYCAKNGQ-IYVADSYNH--KIKKLDPASNRVSTLAG 875 (1089)
Q Consensus 834 ~~l~~P~gva~~~~G~-lyVaD~~n~--~I~~~d~~~~~v~t~~g 875 (1089)
.....++++++|+ |+++...++ .|+.+|.+++...++.+
T Consensus 354 ---~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~ 395 (415)
T 2hqs_A 354 ---FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPA 395 (415)
T ss_dssp ---SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCC
T ss_pred ---CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeC
Confidence 1356789999996 555544443 79999998888777753
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=98.76 E-value=6.7e-07 Score=104.46 Aligned_cols=240 Identities=12% Similarity=0.155 Sum_probs=166.0
Q ss_pred CCceEEEeecCCeEEEEeCCCCEEEEEeCCC-----------CEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCE
Q 001380 602 FPGKLAIDILNNRLFISDSNHNRIVVTDLDG-----------NFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNL 670 (1089)
Q Consensus 602 ~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g-----------~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~ 670 (1089)
.+..+++.+.++.++++-...+.|.+++... +.+..+.+. -....+|++++++..
T Consensus 130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h--------------~~~v~~l~~~~~~~~ 195 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGH--------------QKEGYGLSWNPNLNG 195 (430)
T ss_dssp CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECC--------------SSCCCCEEECTTSTT
T ss_pred cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCC--------------CCCeEEEEeCCCCCC
Confidence 4667899885577888888888999998753 223333222 124688999998873
Q ss_pred EEEEECCCCEEEEEECCCCeE--------EEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEE
Q 001380 671 LYVADTENHALREIDFVNDTV--------RTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWE 742 (1089)
Q Consensus 671 lyVaD~~n~~I~~~d~~~g~v--------~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~ 742 (1089)
++++-..++.|+.++...+.. ..+.+ .-...++++++|.++.++++....+.|..
T Consensus 196 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-----------------h~~~v~~v~~~p~~~~~l~s~~~dg~i~i 258 (430)
T 2xyi_A 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTG-----------------HTAVVEDVAWHLLHESLFGSVADDQKLMI 258 (430)
T ss_dssp EEEEECTTSCEEEEETTSCCBGGGEEECSEEECC-----------------CSSCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred eEEEEeCCCeEEEEeCCCCCCCCceeccceeecC-----------------CCCCEeeeEEeCCCCCEEEEEeCCCeEEE
Confidence 455556678899999876211 11111 11357899999976688888888999999
Q ss_pred EECCCC----eEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCC--eEEEecCCCC
Q 001380 743 HSTVDG----VTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGG--SRLLAGGDPI 816 (1089)
Q Consensus 743 ~~~~~g----~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~--~~~~~g~~~~ 816 (1089)
||...+ .+..+.+. -..++.|+++++++.++++-+..+.|+.++..... +..+.+.
T Consensus 259 ~d~~~~~~~~~~~~~~~~---------------~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h--- 320 (430)
T 2xyi_A 259 WDTRNNNTSKPSHTVDAH---------------TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH--- 320 (430)
T ss_dssp EETTCSCSSSCSEEEECC---------------SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECC---
T ss_pred EECCCCCCCcceeEeecC---------------CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecC---
Confidence 998765 22233211 12467899999987788888888999999987522 2222211
Q ss_pred CCCCccccCCCCCccccccccCceEEEEccCC-cEEEEeCCCCEEEEEeCCC---------------CeEEEEeccCCCC
Q 001380 817 FPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNG-QIYVADSYNHKIKKLDPAS---------------NRVSTLAGIGKAG 880 (1089)
Q Consensus 817 ~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G-~lyVaD~~n~~I~~~d~~~---------------~~v~t~~g~g~~g 880 (1089)
-.....++++++| .++++....++|+.+|... ..+.+..+
T Consensus 321 -------------------~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----- 376 (430)
T 2xyi_A 321 -------------------KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG----- 376 (430)
T ss_dssp -------------------SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCC-----
T ss_pred -------------------CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCC-----
Confidence 1235788999988 5888888889999998764 22222221
Q ss_pred CCCCcccccccCCCceEEEccCCc-EEEEECCCCEEEEEeCCCC
Q 001380 881 FKDGAALAAQLSEPAGIIEAQNGN-LFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 881 ~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~~n~~I~~~~~~~~ 923 (1089)
.-..+..+++.++|. ++++...++.|+++++...
T Consensus 377 ---------h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 377 ---------HTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp ---------CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred ---------CCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 234588999999987 8888889999999998764
|
| >3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A | Back alignment and structure |
|---|
Probab=98.76 E-value=6.7e-09 Score=110.48 Aligned_cols=83 Identities=17% Similarity=0.177 Sum_probs=63.8
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCC----hHhHHHHHHHCCCCCCCcc-EEEEcCCccCCCCCHHHHHHHHHHcCCCC
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSAD----RIKVDANLAAAGLPVSMFD-AIVSADAFENLKPAPDIFLSASKILNVPT 239 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~----~~~~~~~l~~~gl~~~~fd-~i~~~~~~~~~KP~~~~~~~~l~~lgv~p 239 (1089)
.++||+.++|+.|+++|++++|+||+. ++.+...|+++|++ .+.+ .++.... ...+...+..+.+. |.
T Consensus 101 ~~~pG~~ell~~L~~~G~ki~ivTgR~~~~~r~~T~~~L~~lGi~-~~~~~~Lilr~~---~~~K~~~r~~l~~~-Gy-- 173 (262)
T 3ocu_A 101 RAVPGAVEFNNYVNSHNGKVFYVTNRKDSTEKSGTIDDMKRLGFN-GVEESAFYLKKD---KSAKAARFAEIEKQ-GY-- 173 (262)
T ss_dssp EECTTHHHHHHHHHHTTEEEEEEEEEETTTTHHHHHHHHHHHTCS-CCSGGGEEEESS---CSCCHHHHHHHHHT-TE--
T ss_pred CCCccHHHHHHHHHHCCCeEEEEeCCCccchHHHHHHHHHHcCcC-cccccceeccCC---CCChHHHHHHHHhc-CC--
Confidence 789999999999999999999999974 46889999999996 5552 4444332 23455666555554 44
Q ss_pred CcEEEEcCChhhHHH
Q 001380 240 SECIVIEDALAGVQA 254 (1089)
Q Consensus 240 ~~~v~VGD~~~Di~a 254 (1089)
..+++|||.++|+.+
T Consensus 174 ~iv~~vGD~~~Dl~~ 188 (262)
T 3ocu_A 174 EIVLYVGDNLDDFGN 188 (262)
T ss_dssp EEEEEEESSGGGGCS
T ss_pred CEEEEECCChHHhcc
Confidence 349999999999998
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=98.76 E-value=7.6e-07 Score=111.70 Aligned_cols=270 Identities=13% Similarity=0.097 Sum_probs=159.6
Q ss_pred CCCceEEEeecCCeEEEEeCCCC-----EEEEEeCC-CCEEEEEecCCCCCCCCCCCC---cccc---------CCccee
Q 001380 601 KFPGKLAIDILNNRLFISDSNHN-----RIVVTDLD-GNFIVQIGSSGEEGLRDGSFD---DATF---------NRPQGL 662 (1089)
Q Consensus 601 ~~P~~vavd~~~g~L~vsd~~~~-----~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~---~~~f---------~~P~gl 662 (1089)
..+..+++++++..|+.+....+ .|.+++.+ |+....+...+.. .||..- +... .....+
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVL--PGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC----------------------CCEESCCC
T ss_pred CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcc--cccccccchhhhhhhhhhhccccCccee
Confidence 45678899986666776665344 89999987 5554444322110 011000 0000 125789
Q ss_pred EEeeCCCEEEEEECCCCEEEEEECCCC---eEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcE
Q 001380 663 AYNAKKNLLYVADTENHALREIDFVND---TVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQ 739 (1089)
Q Consensus 663 a~d~~g~~lyVaD~~n~~I~~~d~~~g---~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~ 739 (1089)
+++|+|+.|+++.. +.|+.+|..++ .+..+...+ .....++|+|+|+.|+++.. +.
T Consensus 115 ~~SpDg~~l~~~~~--~~i~~~d~~~~~~~~~~~l~~~~-----------------~~~~~~~~SPDG~~la~~~~--~~ 173 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG--GELYLYDLKQEGKAAVRQLTHGE-----------------GFATDAKLSPKGGFVSFIRG--RN 173 (741)
T ss_dssp EECTTSSEEEEEET--TEEEEEESSSCSTTSCCBCCCSS-----------------SCEEEEEECTTSSEEEEEET--TE
T ss_pred EECCCCCEEEEEeC--CcEEEEECCCCCcceEEEcccCC-----------------cccccccCCCCCCEEEEEeC--Cc
Confidence 99999998888874 88999999877 555543211 24678999999988877763 58
Q ss_pred EEEEECCCCeEEEEeCCCccccCCCCCC--CCccccCCceEEEcCCCCEEEEEeCCCC----------------------
Q 001380 740 IWEHSTVDGVTRAFSGDGYERNLNGSSS--LNTSFAQPSGISLSPDFMEIYVADSESS---------------------- 795 (1089)
Q Consensus 740 I~~~~~~~g~~~~~~g~g~~~~~~g~~~--~~~~~~~P~glav~~~g~~lyvad~~~~---------------------- 795 (1089)
|+.+|..++....+...+.....+|... ....+..+.+++++|||+.|+++....+
T Consensus 174 i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~ 253 (741)
T 2ecf_A 174 LWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRY 253 (741)
T ss_dssp EEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEEC
T ss_pred EEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeec
Confidence 9999999888776543221111011000 0011334688999999988888754321
Q ss_pred ----------eEEEEEcCC-CCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEEEeC----CCCE
Q 001380 796 ----------SIRALNLKT-GGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADS----YNHK 859 (1089)
Q Consensus 796 ----------~I~~~~~~~-~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~----~n~~ 859 (1089)
+|+.++..+ +....+..+ . ..-.....+++ +||+ |+++.. ....
T Consensus 254 ~~~g~~~~~~~l~~~d~~~~~~~~~~~~~------------~-------~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~ 313 (741)
T 2ecf_A 254 PAAGDANVQVKLGVISPAEQAQTQWIDLG------------K-------EQDIYLARVNW-RDPQHLSFQRQSRDQKKLD 313 (741)
T ss_dssp CBTTSCCCEEEEEEECSSTTCCCEEECCC------------S-------CSSEEEEEEEE-EETTEEEEEEEETTSSEEE
T ss_pred CCCCCCCCeeEEEEEECCCCCceEEecCC------------C-------CcceEEEEEEe-CCCCEEEEEEecccCCeEE
Confidence 566666655 444333110 0 00123567899 9996 554432 3467
Q ss_pred EEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCC--EEEEEeCCC
Q 001380 860 IKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNN--IIRYLDLNK 922 (1089)
Q Consensus 860 I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~--~I~~~~~~~ 922 (1089)
|+.+|..++.+..+......+ -+.....+++.++|+++++...++ +|..+++++
T Consensus 314 i~~~d~~~g~~~~~~~~~~~~---------~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~ 369 (741)
T 2ecf_A 314 LVEVTLASNQQRVLAHETSPT---------WVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKG 369 (741)
T ss_dssp EEEEETTTCCEEEEEEEECSS---------CCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSS
T ss_pred EEEEECCCCceEEEEEcCCCC---------cCCcCCceEECCCCeEEEEecCCCccEEEEEcCCC
Confidence 999999888876664321111 111234678888888666554443 666666554
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=5.5e-06 Score=103.25 Aligned_cols=258 Identities=11% Similarity=0.130 Sum_probs=156.2
Q ss_pred CceEEEeecCCeEEEEeCCCCEEEEEeCCC-----CEEEEEecCCCCCCCCCC-CCccccCCcceeEEeeCCCEEEEEEC
Q 001380 603 PGKLAIDILNNRLFISDSNHNRIVVTDLDG-----NFIVQIGSSGEEGLRDGS-FDDATFNRPQGLAYNAKKNLLYVADT 676 (1089)
Q Consensus 603 P~~vavd~~~g~L~vsd~~~~~I~~~~~~g-----~~~~~i~~~g~~g~~dG~-~~~~~f~~P~gla~d~~g~~lyVaD~ 676 (1089)
...++++|.+..|+++. ++.|.+++.++ .....+...+......|. ..+..+..+.+++++|+|+.|+++..
T Consensus 123 ~~~~~~SpdG~~la~~~--~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~ 200 (706)
T 2z3z_A 123 TASLDFSPVGDRVAYVR--NHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRM 200 (706)
T ss_dssp CTTCEECTTSSEEEEEE--TTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEE
T ss_pred ccCCcCCCCCCEEEEEE--CCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEE
Confidence 34568888555665543 47898888764 333222221111111110 11233556799999999998887751
Q ss_pred --------------------------------CCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEe
Q 001380 677 --------------------------------ENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYK 724 (1089)
Q Consensus 677 --------------------------------~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~ 724 (1089)
....|+.+|.+++....+..... .-..+..++|+
T Consensus 201 d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~--------------~~~~~~~~~~s 266 (706)
T 2z3z_A 201 DQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEP--------------KEKFLTNLSWS 266 (706)
T ss_dssp ECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSC--------------TTCEEEEEEEC
T ss_pred CCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCC--------------CceeEeeEEEE
Confidence 33578899998888766542100 01246789999
Q ss_pred cCCCEEEEEECCC----cEEEEEECCCC-eEEEEeCCCccccCCCCCCCCccccCCceEEEcC--CCCEEEEEeCC-CCe
Q 001380 725 PINEKVYIAMAGQ----HQIWEHSTVDG-VTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSP--DFMEIYVADSE-SSS 796 (1089)
Q Consensus 725 ~~g~~lyvad~~~----~~I~~~~~~~g-~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~--~g~~lyvad~~-~~~ 796 (1089)
|+|+.|+++.... ..|+.+|..++ .+..+..... ........++++++ +|+.+|+++.. ..+
T Consensus 267 pdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~----------~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~ 336 (706)
T 2z3z_A 267 PDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETD----------KHYVEPLHPLTFLPGSNNQFIWQSRRDGWNH 336 (706)
T ss_dssp TTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEC----------SSCCCCCSCCEECTTCSSEEEEEECTTSSCE
T ss_pred CCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccC----------CCeECccCCceeecCCCCEEEEEEccCCccE
Confidence 9998888865432 48999999988 6655542110 01112236789999 98666655432 346
Q ss_pred EEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceE-EEEccCCc-EEEEeCCCC----EEEEEeCCCCeE
Q 001380 797 IRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLG-VYCAKNGQ-IYVADSYNH----KIKKLDPASNRV 870 (1089)
Q Consensus 797 I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~g-va~~~~G~-lyVaD~~n~----~I~~~d~~~~~v 870 (1089)
|+.++.+++..+.+.++. ....+ ++++++|+ ||++....+ +|+++|.+++.+
T Consensus 337 l~~~~~~~~~~~~l~~~~----------------------~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~ 394 (706)
T 2z3z_A 337 LYLYDTTGRLIRQVTKGE----------------------WEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT 394 (706)
T ss_dssp EEEEETTSCEEEECCCSS----------------------SCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC
T ss_pred EEEEECCCCEEEecCCCC----------------------eEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc
Confidence 777776555444443211 01223 68899984 777776654 899999888776
Q ss_pred EEEeccCCCCCCCCcccccccCCCceEEEccCCcEEE-E-ECCC--CEEEEEeCCCC
Q 001380 871 STLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFI-A-DTNN--NIIRYLDLNKE 923 (1089)
Q Consensus 871 ~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyV-a-d~~n--~~I~~~~~~~~ 923 (1089)
..+... .....+++.++|+.++ + ...+ ..|..+++.++
T Consensus 395 ~~l~~~---------------~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 395 KDLTPE---------------SGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp EESCCS---------------SSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred eeccCC---------------CceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 665321 1245678888887333 2 2222 67999999876
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=98.75 E-value=3.6e-06 Score=93.91 Aligned_cols=242 Identities=13% Similarity=0.149 Sum_probs=157.6
Q ss_pred ceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEE
Q 001380 604 GKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALR 682 (1089)
Q Consensus 604 ~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~ 682 (1089)
..+++++ +++++++-...+.|.++|.. |+.+..+.+. . .....++++++++ ++++-..++.|+
T Consensus 69 ~~~~~s~-dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h-~-------------~~v~~~~~~~~~~-~l~s~s~D~~i~ 132 (319)
T 3frx_A 69 QDCTLTA-DGAYALSASWDKTLRLWDVATGETYQRFVGH-K-------------SDVMSVDIDKKAS-MIISGSRDKTIK 132 (319)
T ss_dssp EEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECC-S-------------SCEEEEEECTTSC-EEEEEETTSCEE
T ss_pred EEEEECC-CCCEEEEEeCCCEEEEEECCCCCeeEEEccC-C-------------CcEEEEEEcCCCC-EEEEEeCCCeEE
Confidence 3577886 67777777778999999986 6666665443 1 2457899999998 455555678899
Q ss_pred EEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCC-----CEEEEEECCCcEEEEEECCCCeEEE-EeCC
Q 001380 683 EIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPIN-----EKVYIAMAGQHQIWEHSTVDGVTRA-FSGD 756 (1089)
Q Consensus 683 ~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g-----~~lyvad~~~~~I~~~~~~~g~~~~-~~g~ 756 (1089)
.+|..+..+.++.+.. .....+++.|.. +.++++....+.|..||...+.... +.+.
T Consensus 133 vwd~~~~~~~~~~~h~-----------------~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h 195 (319)
T 3frx_A 133 VWTIKGQCLATLLGHN-----------------DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH 195 (319)
T ss_dssp EEETTSCEEEEECCCS-----------------SCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred EEECCCCeEEEEeccC-----------------CcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCC
Confidence 9999888887775432 134567776643 2356666678889999988776443 3321
Q ss_pred CccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccc
Q 001380 757 GYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLL 836 (1089)
Q Consensus 757 g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l 836 (1089)
-.....++++|+| .++++-+..+.|+.++..++........ -
T Consensus 196 ---------------~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~~~~~~~~----------------------~ 237 (319)
T 3frx_A 196 ---------------NSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKKAMYTLSA----------------------Q 237 (319)
T ss_dssp ---------------CSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEEEEEEC----------------------C
T ss_pred ---------------CCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEecC----------------------C
Confidence 1235689999998 5556666779999999886543322110 0
Q ss_pred cCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEE
Q 001380 837 QHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIR 916 (1089)
Q Consensus 837 ~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~ 916 (1089)
.....++++|+|.++++-.. ..|+.++.+++.+.........++.. ..-.....+++.++|+.+++-..++.|+
T Consensus 238 ~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~spdg~~l~sg~~Dg~i~ 311 (319)
T 3frx_A 238 DEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSK-----AAEPHAVSLAWSADGQTLFAGYTDNVIR 311 (319)
T ss_dssp SCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCG-----GGCCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCcccccccc-----CcCcceeEEEECCCCCEEEEeecCceEE
Confidence 13567999999976655443 45777776655443322111111100 0112345789999999888888889999
Q ss_pred EEeCCC
Q 001380 917 YLDLNK 922 (1089)
Q Consensus 917 ~~~~~~ 922 (1089)
++++.+
T Consensus 312 vWd~~t 317 (319)
T 3frx_A 312 VWQVMT 317 (319)
T ss_dssp EEEEEE
T ss_pred EEEEee
Confidence 988754
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=98.75 E-value=1.4e-05 Score=88.41 Aligned_cols=240 Identities=16% Similarity=0.197 Sum_probs=155.9
Q ss_pred CCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCE
Q 001380 602 FPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHA 680 (1089)
Q Consensus 602 ~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~ 680 (1089)
....+++++ +++++++-...+.|.+++.. ++....+.+. . .....++++++++.|+.+ ..++.
T Consensus 25 ~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h-~-------------~~v~~~~~~~~~~~l~s~-~~d~~ 88 (312)
T 4ery_A 25 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGH-K-------------LGISDVAWSSDSNLLVSA-SDDKT 88 (312)
T ss_dssp CEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCC-S-------------SCEEEEEECTTSSEEEEE-ETTSE
T ss_pred cEEEEEECC-CCCEEEEeeCCCeEEEEeCCCcccchhhccC-C-------------CceEEEEEcCCCCEEEEE-CCCCE
Confidence 345688887 66666666667889999875 6766665432 1 235789999999955544 45789
Q ss_pred EEEEECCCCe-EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEE-EEeCCCc
Q 001380 681 LREIDFVNDT-VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTR-AFSGDGY 758 (1089)
Q Consensus 681 I~~~d~~~g~-v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~-~~~g~g~ 758 (1089)
|+.+|..++. +.++.+.. .....++++|+++.| ++....+.|..||..++... .+.+.
T Consensus 89 i~vwd~~~~~~~~~~~~~~-----------------~~v~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~-- 148 (312)
T 4ery_A 89 LKIWDVSSGKCLKTLKGHS-----------------NYVFCCNFNPQSNLI-VSGSFDESVRIWDVKTGKCLKTLPAH-- 148 (312)
T ss_dssp EEEEETTTCCEEEEEECCS-----------------SCEEEEEECSSSSEE-EEEETTSCEEEEETTTCCEEEEECCC--
T ss_pred EEEEECCCCcEEEEEcCCC-----------------CCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCEEEEEecCC--
Confidence 9999998765 44443211 245788999988555 44455788999998877543 33221
Q ss_pred cccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEE-EecCCCCCCCCccccCCCCCcccccccc
Q 001380 759 ERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRL-LAGGDPIFPDNLFKFGDRDGMGSEVLLQ 837 (1089)
Q Consensus 759 ~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~-~~g~~~~~~~~l~~~g~~dg~~~~~~l~ 837 (1089)
-.....++++++++ ++++-+..+.|+.++..++.... +.... -.
T Consensus 149 -------------~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~---------------------~~ 193 (312)
T 4ery_A 149 -------------SDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDD---------------------NP 193 (312)
T ss_dssp -------------SSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCSS---------------------CC
T ss_pred -------------CCcEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeEEeccC---------------------CC
Confidence 11246889999984 45555567899999988655422 21100 01
Q ss_pred CceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEE-EeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEE
Q 001380 838 HPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVST-LAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIR 916 (1089)
Q Consensus 838 ~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t-~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~ 916 (1089)
....++++++|+.+++-...+.|+.+|..++.... +.+.... ...........+|.++++...++.|+
T Consensus 194 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~sg~~dg~i~ 262 (312)
T 4ery_A 194 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE-----------KYCIFANFSVTGGKWIVSGSEDNLVY 262 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCS-----------SSCCCEEEECSSSCEEEECCTTSCEE
T ss_pred ceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCc-----------eEEEEEEEEeCCCcEEEEECCCCEEE
Confidence 23568899999888888888999999998776543 3221100 00011111224567778888888999
Q ss_pred EEeCCCC
Q 001380 917 YLDLNKE 923 (1089)
Q Consensus 917 ~~~~~~~ 923 (1089)
.+++...
T Consensus 263 vwd~~~~ 269 (312)
T 4ery_A 263 IWNLQTK 269 (312)
T ss_dssp EEETTTC
T ss_pred EEECCCc
Confidence 9998876
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=98.75 E-value=4.8e-07 Score=102.91 Aligned_cols=242 Identities=11% Similarity=0.067 Sum_probs=156.8
Q ss_pred CceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEE--EecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCC
Q 001380 603 PGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQ--IGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENH 679 (1089)
Q Consensus 603 P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~--i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~ 679 (1089)
-..+++.+ +++++++. ..+.|.++|.. ++.... +...+ .-.....++++|+|+.|+.+ ..++
T Consensus 97 V~~~~~s~-d~~~l~~s-~dg~v~lWd~~~~~~~~~~~~~~~~------------h~~~V~~v~~spdg~~l~sg-s~dg 161 (357)
T 4g56_B 97 VTDVAWVS-EKGILVAS-DSGAVELWEILEKESLLVNKFAKYE------------HDDIVKTLSVFSDGTQAVSG-GKDF 161 (357)
T ss_dssp EEEEEEET-TTEEEEEE-TTSCEEEC--------CCCCEEECC------------CSSCEEEEEECSSSSEEEEE-ETTS
T ss_pred EEEEEEcC-CCCEEEEE-CCCEEEEeeccccceeEEEeeccCC------------CCCCEEEEEECCCCCEEEEE-eCCC
Confidence 34678887 67776664 46788888865 332211 11110 01245789999999955544 4578
Q ss_pred EEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCcc
Q 001380 680 ALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYE 759 (1089)
Q Consensus 680 ~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~ 759 (1089)
.|+.+|..++......... -...+.|+++++++.++++....+.|..||..++........
T Consensus 162 ~v~iwd~~~~~~~~~~~~h----------------~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~--- 222 (357)
T 4g56_B 162 SVKVWDLSQKAVLKSYNAH----------------SSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF--- 222 (357)
T ss_dssp CEEEEETTTTEEEEEECCC----------------SSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC---
T ss_pred eEEEEECCCCcEEEEEcCC----------------CCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee---
Confidence 8999999887755443111 124678999998877777777788898888766542211100
Q ss_pred ccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCe-EEEecCCCCCCCCccccCCCCCccccccccC
Q 001380 760 RNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGS-RLLAGGDPIFPDNLFKFGDRDGMGSEVLLQH 838 (1089)
Q Consensus 760 ~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~-~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~ 838 (1089)
...-..+..++++|+++.++++-...+.|+.++..++.. ..+.+. -..
T Consensus 223 ---------~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~----------------------~~~ 271 (357)
T 4g56_B 223 ---------CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVH----------------------SQN 271 (357)
T ss_dssp ---------TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCC----------------------SSC
T ss_pred ---------ccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecc----------------------cee
Confidence 011124678999998767877777788999999876543 222111 112
Q ss_pred ceEEEEccCC-cEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEcc-CCcEEEEECCCCEEE
Q 001380 839 PLGVYCAKNG-QIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQ-NGNLFIADTNNNIIR 916 (1089)
Q Consensus 839 P~gva~~~~G-~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~-~G~lyVad~~n~~I~ 916 (1089)
-.+++++++| ++.++-+..+.|+.+|..++++....+. -....+|++.+ +|+++++-..+++|+
T Consensus 272 v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H--------------~~~V~~vafsP~d~~~l~s~s~Dg~v~ 337 (357)
T 4g56_B 272 ITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSH--------------RDFVTGVAWSPLDHSKFTTVGWDHKVL 337 (357)
T ss_dssp EEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCC--------------SSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred EEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCC--------------CCCEEEEEEeCCCCCEEEEEcCCCeEE
Confidence 4678999887 5666667788999999998877665432 13367889986 788888888889999
Q ss_pred EEeCCCC
Q 001380 917 YLDLNKE 923 (1089)
Q Consensus 917 ~~~~~~~ 923 (1089)
.+++...
T Consensus 338 iW~~~~~ 344 (357)
T 4g56_B 338 HHHLPSE 344 (357)
T ss_dssp EEECC--
T ss_pred EEECCCC
Confidence 9998765
|
| >3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.4e-08 Score=117.10 Aligned_cols=93 Identities=15% Similarity=0.144 Sum_probs=71.3
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCC-------CEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCC
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDM-------PFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGD 524 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~-------~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~ 524 (1089)
.+|+|||+|||+||++|+.+.|.+.+++++|++. .+.++.|.+ |.+
T Consensus 41 ~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~---------------------------d~~ 93 (470)
T 3qcp_A 41 PLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNC---------------------------ASE 93 (470)
T ss_dssp GGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEET---------------------------TTC
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEEC---------------------------CCC
Confidence 3589999999999999999999999999999743 389999965 456
Q ss_pred hhHHHHhCCCceeEEEEECCCCc-EEEEecCC------------CchhhHHHHHHHHHHH
Q 001380 525 MNLWRELGVNSWPTFAVVGPNGK-LLAQLAGE------------GHRKDLDDLVEAALLF 571 (1089)
Q Consensus 525 ~~l~~~~~v~~~Pt~~lid~~G~-i~~~~~G~------------~~~~~l~~~l~~~l~~ 571 (1089)
.++++.|+|.++||++++++.|. ....+.|. ...++++..++.++..
T Consensus 94 ~~la~~y~V~~~PTlilf~~gg~~~~~~y~G~r~~e~L~fI~k~l~~~eLe~~~e~Link 153 (470)
T 3qcp_A 94 VDLCRKYDINFVPRLFFFYPRDSCRSNEECGTSSLEHVAFENSHLEVDELESEVRRLVNK 153 (470)
T ss_dssp HHHHHHTTCCSSCEEEEEEESSCCCTTSCCCCCCEEEEECSCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCccCeEEEEECCCceEEEEeeCCCCHHHHHHHHHhcCHHHHHHHHHHHhhh
Confidence 68999999999999999976553 22233342 3455666666666543
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=3e-06 Score=98.30 Aligned_cols=243 Identities=16% Similarity=0.238 Sum_probs=163.6
Q ss_pred CCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCE
Q 001380 602 FPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHA 680 (1089)
Q Consensus 602 ~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~ 680 (1089)
....++++| ++.++++-...+.|.++|.. |+.+..+.+. . .....++++++|+ ++++-..++.
T Consensus 110 ~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h-~-------------~~V~~v~~~~~~~-~l~sgs~D~~ 173 (410)
T 1vyh_C 110 PVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGH-T-------------DSVQDISFDHSGK-LLASCSADMT 173 (410)
T ss_dssp CEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEECCC-S-------------SCEEEEEECTTSS-EEEEEETTSC
T ss_pred cEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEEecc-C-------------CcEEEEEEcCCCC-EEEEEeCCCe
Confidence 345678887 67778887778999999976 6666555432 1 2457899999999 4555556788
Q ss_pred EEEEECCCCeE-EEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeE-EEEeCCCc
Q 001380 681 LREIDFVNDTV-RTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVT-RAFSGDGY 758 (1089)
Q Consensus 681 I~~~d~~~g~v-~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~-~~~~g~g~ 758 (1089)
|+.+|..++.. .++.+.. .....++++|+++.| ++....+.|..||..++.. ..+.+..
T Consensus 174 i~iwd~~~~~~~~~~~~h~-----------------~~V~~v~~~p~~~~l-~s~s~D~~i~~wd~~~~~~~~~~~~h~- 234 (410)
T 1vyh_C 174 IKLWDFQGFECIRTMHGHD-----------------HNVSSVSIMPNGDHI-VSASRDKTIKMWEVQTGYCVKTFTGHR- 234 (410)
T ss_dssp CCEEETTSSCEEECCCCCS-----------------SCEEEEEECSSSSEE-EEEETTSEEEEEETTTCCEEEEEECCS-
T ss_pred EEEEeCCCCceeEEEcCCC-----------------CCEEEEEEeCCCCEE-EEEeCCCeEEEEECCCCcEEEEEeCCC-
Confidence 99999877553 3332211 246789999988555 4555678999999987754 3444321
Q ss_pred cccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEE-EecCCCCCCCCccccCCCCCcccccccc
Q 001380 759 ERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRL-LAGGDPIFPDNLFKFGDRDGMGSEVLLQ 837 (1089)
Q Consensus 759 ~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~-~~g~~~~~~~~l~~~g~~dg~~~~~~l~ 837 (1089)
.....++++++| .++++-+..+.|+.++..++.... +.+.. .
T Consensus 235 --------------~~v~~~~~~~~g-~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~----------------------~ 277 (410)
T 1vyh_C 235 --------------EWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKAELREHR----------------------H 277 (410)
T ss_dssp --------------SCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEECCCS----------------------S
T ss_pred --------------ccEEEEEECCCC-CEEEEEcCCCeEEEEECCCCceeeEecCCC----------------------c
Confidence 134578889998 666666678899999988665432 21111 0
Q ss_pred CceEEEEcc--------------------CCcEEEEeCCCCEEEEEeCCCCeE-EEEeccCCCCCCCCcccccccCCCce
Q 001380 838 HPLGVYCAK--------------------NGQIYVADSYNHKIKKLDPASNRV-STLAGIGKAGFKDGAALAAQLSEPAG 896 (1089)
Q Consensus 838 ~P~gva~~~--------------------~G~lyVaD~~n~~I~~~d~~~~~v-~t~~g~g~~g~~~g~~~~~~l~~P~g 896 (1089)
....+++.+ +|.++++-+..+.|+.+|..++.+ .++.+. -....+
T Consensus 278 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h--------------~~~v~~ 343 (410)
T 1vyh_C 278 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH--------------DNWVRG 343 (410)
T ss_dssp CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC--------------SSCEEE
T ss_pred eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECC--------------CCcEEE
Confidence 122333333 367788888889999999876654 444332 233578
Q ss_pred EEEccCCcEEEEECCCCEEEEEeCCCCCceEEEEe
Q 001380 897 IIEAQNGNLFIADTNNNIIRYLDLNKEEPELQTLE 931 (1089)
Q Consensus 897 i~vd~~G~lyVad~~n~~I~~~~~~~~~~~~~~l~ 931 (1089)
++++++|+.+++-..++.|+.+++.... .+.++.
T Consensus 344 v~~~~~g~~l~s~s~D~~i~vwd~~~~~-~~~~~~ 377 (410)
T 1vyh_C 344 VLFHSGGKFILSCADDKTLRVWDYKNKR-CMKTLN 377 (410)
T ss_dssp EEECSSSSCEEEEETTTEEEEECCTTSC-CCEEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCc-eEEEEc
Confidence 8999999877888888999999987652 344443
|
| >1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: c.108.1.10 | Back alignment and structure |
|---|
Probab=98.73 E-value=6.2e-09 Score=114.88 Aligned_cols=72 Identities=17% Similarity=0.215 Sum_probs=57.3
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHh
Q 001380 221 LKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILT 296 (1089)
Q Consensus 221 ~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~ 296 (1089)
+-.|...++.+++++|++++++++|||+.||+.+++.+|+ ++.+.. ..+++++ .+++++.+..+-.+...|.
T Consensus 214 ~~~K~~~~~~~~~~~~~~~~~~~~~GD~~nD~~m~~~ag~-~va~~~--~~~~~~~-~a~~v~~~~~~dGVa~~i~ 285 (288)
T 1nrw_A 214 KASKGQALKRLAKQLNIPLEETAAVGDSLNDKSMLEAAGK-GVAMGN--AREDIKS-IADAVTLTNDEHGVAHMMK 285 (288)
T ss_dssp TCSHHHHHHHHHHHTTCCGGGEEEEESSGGGHHHHHHSSE-EEECTT--CCHHHHH-HCSEECCCGGGTHHHHHHH
T ss_pred CCChHHHHHHHHHHhCCCHHHEEEEcCCHHHHHHHHHcCc-EEEEcC--CCHHHHh-hCceeecCCCcChHHHHHH
Confidence 4467788999999999999999999999999999999997 555543 3455555 4899998887765665554
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.7e-06 Score=93.98 Aligned_cols=227 Identities=12% Similarity=0.072 Sum_probs=141.3
Q ss_pred CceEEEeecCCeEEEEeCCCCEEEEEeCCC-CEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC---C
Q 001380 603 PGKLAIDILNNRLFISDSNHNRIVVTDLDG-NFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE---N 678 (1089)
Q Consensus 603 P~~vavd~~~g~L~vsd~~~~~I~~~~~~g-~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~---n 678 (1089)
...++++|.+..|+++. .+.|.+++.++ .....+..... ...+..++++|+|+.|+++... .
T Consensus 44 v~~~~~spdg~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~------------~~~~~~~~~spdg~~l~~~~~~~~~~ 109 (297)
T 2ojh_A 44 FEAPNWSPDGKYLLLNS--EGLLYRLSLAGDPSPEKVDTGFA------------TICNNDHGISPDGALYAISDKVEFGK 109 (297)
T ss_dssp CEEEEECTTSSEEEEEE--TTEEEEEESSSCCSCEECCCTTC------------CCBCSCCEECTTSSEEEEEECTTTSS
T ss_pred eEeeEECCCCCEEEEEc--CCeEEEEeCCCCCCceEeccccc------------cccccceEECCCCCEEEEEEeCCCCc
Confidence 45688888555455554 56899999876 43333221100 1245789999999988877632 5
Q ss_pred CEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCc--EEEEEECCCCeEEEEeCC
Q 001380 679 HALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQH--QIWEHSTVDGVTRAFSGD 756 (1089)
Q Consensus 679 ~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~--~I~~~~~~~g~~~~~~g~ 756 (1089)
..|+.++..++....+.... ....++++|++..|+++....+ +||.++..++....+...
T Consensus 110 ~~l~~~~~~~~~~~~~~~~~------------------~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 171 (297)
T 2ojh_A 110 SAIYLLPSTGGTPRLMTKNL------------------PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHG 171 (297)
T ss_dssp CEEEEEETTCCCCEECCSSS------------------SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCS
T ss_pred ceEEEEECCCCceEEeecCC------------------CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccC
Confidence 68999998877766654211 3567899999988886654444 688888877766554321
Q ss_pred CccccCCCCCCCCccccCCceEEEcCCCCEEEEEeC--CCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccc
Q 001380 757 GYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADS--ESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEV 834 (1089)
Q Consensus 757 g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~--~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~ 834 (1089)
...+..++++++|+.|+++.. +...|+.++..++....+...
T Consensus 172 ---------------~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~--------------------- 215 (297)
T 2ojh_A 172 ---------------EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDS--------------------- 215 (297)
T ss_dssp ---------------SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCC---------------------
T ss_pred ---------------CCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecC---------------------
Confidence 124578999999988887754 344566666555554433211
Q ss_pred cccCceEEEEccCCc-EEEEeC----------CCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCC
Q 001380 835 LLQHPLGVYCAKNGQ-IYVADS----------YNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNG 903 (1089)
Q Consensus 835 ~l~~P~gva~~~~G~-lyVaD~----------~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G 903 (1089)
-.....++++++|+ |+++.. ....|..+|..++....+..... .-.....+++.++|
T Consensus 216 -~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~-----------~~~~~~~~~~spdg 283 (297)
T 2ojh_A 216 -AYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFG-----------GQGTMNSPNWSPDG 283 (297)
T ss_dssp -SEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEE-----------STTTSCSCCBCTTS
T ss_pred -CcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCC-----------CCcccccceECCCC
Confidence 01245688899996 444433 22679999998876554432100 01235567778888
Q ss_pred c-EEEEE
Q 001380 904 N-LFIAD 909 (1089)
Q Consensus 904 ~-lyVad 909 (1089)
+ |+++.
T Consensus 284 ~~l~~~~ 290 (297)
T 2ojh_A 284 DEFAYVR 290 (297)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 6 54443
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=98.73 E-value=9.9e-06 Score=89.54 Aligned_cols=244 Identities=11% Similarity=0.149 Sum_probs=162.5
Q ss_pred CceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEE
Q 001380 603 PGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHAL 681 (1089)
Q Consensus 603 P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I 681 (1089)
...++++| ++.++++-...+.|.++|.. ++.+..+... . .....+++.++++.|+ +-..++.|
T Consensus 16 V~~~~fsp-~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~-~-------------~~v~~~~~~~~~~~l~-s~s~d~~i 79 (304)
T 2ynn_A 16 VKGIDFHP-TEPWVLTTLYSGRVELWNYETQVEVRSIQVT-E-------------TPVRAGKFIARKNWII-VGSDDFRI 79 (304)
T ss_dssp EEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECC-S-------------SCEEEEEEEGGGTEEE-EEETTSEE
T ss_pred eEEEEECC-CCCEEEEEcCCCcEEEEECCCCceeEEeecc-C-------------CcEEEEEEeCCCCEEE-EECCCCEE
Confidence 45788998 66677776678999999987 5555555443 1 1346788999999544 44568899
Q ss_pred EEEECCCCe-EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCC-eE-EEEeCCCc
Q 001380 682 REIDFVNDT-VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDG-VT-RAFSGDGY 758 (1089)
Q Consensus 682 ~~~d~~~g~-v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g-~~-~~~~g~g~ 758 (1089)
+.+|..++. +.++.+.. ...+.|+++|++..| ++....+.|..||..++ .+ ..+.+..
T Consensus 80 ~vwd~~~~~~~~~~~~h~-----------------~~v~~~~~~~~~~~l-~sgs~D~~v~lWd~~~~~~~~~~~~~h~- 140 (304)
T 2ynn_A 80 RVFNYNTGEKVVDFEAHP-----------------DYIRSIAVHPTKPYV-LSGSDDLTVKLWNWENNWALEQTFEGHE- 140 (304)
T ss_dssp EEEETTTCCEEEEEECCS-----------------SCEEEEEECSSSSEE-EEEETTSCEEEEEGGGTTEEEEEECCCC-
T ss_pred EEEECCCCcEEEEEeCCC-----------------CcEEEEEEcCCCCEE-EEECCCCeEEEEECCCCcchhhhhcccC-
Confidence 999998765 44443221 246789999998544 55556788888987765 32 2333211
Q ss_pred cccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeE-EEecCCCCCCCCccccCCCCCcccccccc
Q 001380 759 ERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR-LLAGGDPIFPDNLFKFGDRDGMGSEVLLQ 837 (1089)
Q Consensus 759 ~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~-~~~g~~~~~~~~l~~~g~~dg~~~~~~l~ 837 (1089)
.....++++|+++.++++-+..+.|+.++...+... .+.. +.. .
T Consensus 141 --------------~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~------------~~~---------~ 185 (304)
T 2ynn_A 141 --------------HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT------------GQE---------R 185 (304)
T ss_dssp --------------SCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEEC------------CCT---------T
T ss_pred --------------CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceecc------------CCc---------C
Confidence 134688999854467777778899999998643321 1111 000 1
Q ss_pred CceEEEEcc--CCcEEEEeCCCCEEEEEeCCCCeE-EEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCE
Q 001380 838 HPLGVYCAK--NGQIYVADSYNHKIKKLDPASNRV-STLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNI 914 (1089)
Q Consensus 838 ~P~gva~~~--~G~lyVaD~~n~~I~~~d~~~~~v-~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~ 914 (1089)
....+++.+ ++.++++-+..+.|+.+|..++.+ .++.+. ......+++.+++.++++-..++.
T Consensus 186 ~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h--------------~~~v~~~~~~p~~~~l~s~s~Dg~ 251 (304)
T 2ynn_A 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH--------------MSNVSFAVFHPTLPIIISGSEDGT 251 (304)
T ss_dssp CEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECC--------------SSCEEEEEECSSSSEEEEEETTSC
T ss_pred cEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCC--------------CCCEEEEEECCCCCEEEEEcCCCe
Confidence 123455544 677888888889999999887654 444432 233567888999988888888999
Q ss_pred EEEEeCCCCCceEEEEe
Q 001380 915 IRYLDLNKEEPELQTLE 931 (1089)
Q Consensus 915 I~~~~~~~~~~~~~~l~ 931 (1089)
|+.++..+.. .+.++.
T Consensus 252 i~iWd~~~~~-~~~~~~ 267 (304)
T 2ynn_A 252 LKIWNSSTYK-VEKTLN 267 (304)
T ss_dssp EEEEETTTCC-EEEEEC
T ss_pred EEEEECCCCc-eeeecc
Confidence 9999998762 344443
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.73 E-value=8.4e-06 Score=91.75 Aligned_cols=247 Identities=8% Similarity=-0.013 Sum_probs=155.1
Q ss_pred CCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCE
Q 001380 602 FPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHA 680 (1089)
Q Consensus 602 ~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~ 680 (1089)
....+++++ +++++++-..++.|.+++.. ++.+..+... . .....++++++++.|+.+. .++.
T Consensus 34 ~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h-~-------------~~v~~~~~~~~~~~l~s~~-~dg~ 97 (369)
T 3zwl_B 34 PLTQVKYNK-EGDLLFSCSKDSSASVWYSLNGERLGTLDGH-T-------------GTIWSIDVDCFTKYCVTGS-ADYS 97 (369)
T ss_dssp CEEEEEECT-TSCEEEEEESSSCEEEEETTTCCEEEEECCC-S-------------SCEEEEEECTTSSEEEEEE-TTTE
T ss_pred eEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCchhhhhhhhc-C-------------CcEEEEEEcCCCCEEEEEe-CCCe
Confidence 345688887 56666665667899999865 7777666533 1 2457899999999655554 5789
Q ss_pred EEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC----CcEEEEEECCCCe----EEE
Q 001380 681 LREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG----QHQIWEHSTVDGV----TRA 752 (1089)
Q Consensus 681 I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~----~~~I~~~~~~~g~----~~~ 752 (1089)
|+.+|+.++......... .....++++|++..++++... .+.|..|+...+. ...
T Consensus 98 i~iwd~~~~~~~~~~~~~-----------------~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~ 160 (369)
T 3zwl_B 98 IKLWDVSNGQCVATWKSP-----------------VPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTK 160 (369)
T ss_dssp EEEEETTTCCEEEEEECS-----------------SCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEE
T ss_pred EEEEECCCCcEEEEeecC-----------------CCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecc
Confidence 999999877655443211 256889999999777766543 2677777654321 111
Q ss_pred EeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCe-E-EEecCCCCCCCCccccCCCCCc
Q 001380 753 FSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGS-R-LLAGGDPIFPDNLFKFGDRDGM 830 (1089)
Q Consensus 753 ~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~-~-~~~g~~~~~~~~l~~~g~~dg~ 830 (1089)
...... ... ...........++++++++.|+++. ..+.|+.++..++.. . .+.+.
T Consensus 161 ~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~----------------- 217 (369)
T 3zwl_B 161 VSEEPI-HKI----ITHEGLDAATVAGWSTKGKYIIAGH-KDGKISKYDVSNNYEYVDSIDLH----------------- 217 (369)
T ss_dssp ECSSCS-EEE----ECCTTCCCEEEEEECGGGCEEEEEE-TTSEEEEEETTTTTEEEEEEECC-----------------
T ss_pred ccccee-eec----cCCcCccceeEEEEcCCCCEEEEEc-CCCEEEEEECCCCcEeEEEEecC-----------------
Confidence 110000 000 0001122567899999986665554 568999999886322 2 22111
Q ss_pred cccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEEC
Q 001380 831 GSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADT 910 (1089)
Q Consensus 831 ~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~ 910 (1089)
-....+++++++|+.+++-+.++.|+.+|..++.+...... -.....+++.++|+.+++..
T Consensus 218 -----~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~~~~ 278 (369)
T 3zwl_B 218 -----EKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYET--------------DCPLNTAVITPLKEFIILGG 278 (369)
T ss_dssp -----SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC--------------SSCEEEEEECSSSSEEEEEE
T ss_pred -----CCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecC--------------CCCceeEEecCCCceEEEee
Confidence 12357889999998778777889999999887665443321 12356788888887544444
Q ss_pred CCC--------------EEEEEeCCCC
Q 001380 911 NNN--------------IIRYLDLNKE 923 (1089)
Q Consensus 911 ~n~--------------~I~~~~~~~~ 923 (1089)
..+ .|+.++....
T Consensus 279 ~~~~~~~~~~~~~~~~~~i~~~d~~~~ 305 (369)
T 3zwl_B 279 GQEAKDVTTTSANEGKFEARFYHKIFE 305 (369)
T ss_dssp CCC-------------CEEEEEETTTC
T ss_pred cCCCceEEEEecCCCcceeEEEecCCC
Confidence 444 6677776655
|
| >3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida} | Back alignment and structure |
|---|
Probab=98.72 E-value=7.6e-09 Score=109.90 Aligned_cols=84 Identities=14% Similarity=0.245 Sum_probs=62.8
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCC----hHhHHHHHHHCCCCCCCcc-EEEEcCCccCCCCCHHHHHHHHHHcCCC
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSAD----RIKVDANLAAAGLPVSMFD-AIVSADAFENLKPAPDIFLSASKILNVP 238 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~----~~~~~~~l~~~gl~~~~fd-~i~~~~~~~~~KP~~~~~~~~l~~lgv~ 238 (1089)
.+++||+.++|+.|+++|++++|+||+. ++.+...|+++|+. .+++ .++.... ++........+++.|.
T Consensus 100 ~~~~pg~~ell~~L~~~G~~i~ivTgR~~~~~r~~T~~~L~~lGi~-~~~~~~Lilr~~----~~~K~~~r~~L~~~gy- 173 (260)
T 3pct_A 100 SAAIPGAVEFSNYVNANGGTMFFVSNRRDDVEKAGTVDDMKRLGFT-GVNDKTLLLKKD----KSNKSVRFKQVEDMGY- 173 (260)
T ss_dssp CEECTTHHHHHHHHHHTTCEEEEEEEEETTTSHHHHHHHHHHHTCC-CCSTTTEEEESS----CSSSHHHHHHHHTTTC-
T ss_pred CCCCccHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCcC-ccccceeEecCC----CCChHHHHHHHHhcCC-
Confidence 3789999999999999999999999974 46889999999996 5553 3443321 2223444444444454
Q ss_pred CCcEEEEcCChhhHHH
Q 001380 239 TSECIVIEDALAGVQA 254 (1089)
Q Consensus 239 p~~~v~VGD~~~Di~a 254 (1089)
..+++|||..+|+.+
T Consensus 174 -~iv~~iGD~~~Dl~~ 188 (260)
T 3pct_A 174 -DIVLFVGDNLNDFGD 188 (260)
T ss_dssp -EEEEEEESSGGGGCG
T ss_pred -CEEEEECCChHHcCc
Confidence 449999999999998
|
| >3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A | Back alignment and structure |
|---|
Probab=98.71 E-value=3.6e-08 Score=112.55 Aligned_cols=89 Identities=18% Similarity=0.131 Sum_probs=74.9
Q ss_pred CCCEEEEEEecCCCcchhhhh------hhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCCh
Q 001380 452 KGKVVVLDFWTYCCINCMHVL------PDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDM 525 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~------p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~ 525 (1089)
.++++||+|||+||++|.... |.+.++++++++.++.+..|.+ +.+.
T Consensus 29 ~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~---------------------------~~~~ 81 (367)
T 3us3_A 29 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDS---------------------------EKDA 81 (367)
T ss_dssp HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEET---------------------------TTTH
T ss_pred hCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeC---------------------------cccH
Confidence 468999999999999984332 6888999988876799999965 5567
Q ss_pred hHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 526 NLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 526 ~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
+++++|+|.++||++++ ++|+.+ .+.|..+.+.+.++|...+
T Consensus 82 ~l~~~~~V~~~PTl~~f-~~G~~~-~y~G~~~~~~i~~~i~~~~ 123 (367)
T 3us3_A 82 AVAKKLGLTEEDSIYVF-KEDEVI-EYDGEFSADTLVEFLLDVL 123 (367)
T ss_dssp HHHHHHTCCSTTEEEEE-ETTEEE-ECCSCCSHHHHHHHHHHHH
T ss_pred HHHHHcCCCcCceEEEE-ECCcEE-EeCCCCCHHHHHHHHHHhc
Confidence 89999999999999999 578875 7889999999999887765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1089 | ||||
| d2b5xa1 | 143 | c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase | 3e-22 | |
| d1swva_ | 257 | c.108.1.3 (A:) Phosphonoacetaldehyde hydrolase {Ba | 2e-21 | |
| d1te2a_ | 218 | c.108.1.6 (A:) Phosphatase YniC {Escherichia coli | 2e-20 | |
| d2b0ca1 | 197 | c.108.1.2 (A:8-204) Putative phosphatase YihX {Esc | 7e-20 | |
| d1cr6a1 | 222 | c.108.1.2 (A:4-225) Epoxide hydrolase, N-terminal | 2e-19 | |
| d1zd3a1 | 225 | c.108.1.2 (A:2-224) Epoxide hydrolase, N-terminal | 4e-18 | |
| d2fi1a1 | 187 | c.108.1.3 (A:4-190) Putative hydrolase SP0805 {Str | 6e-18 | |
| d2fy6a1 | 143 | c.47.1.10 (A:33-175) Peptide methionine sulfoxide | 1e-17 | |
| d1o08a_ | 221 | c.108.1.6 (A:) beta-Phosphoglucomutase {Lactococcu | 6e-17 | |
| d2fdra1 | 222 | c.108.1.6 (A:3-224) Hypothetical protein Atu0790 { | 8e-17 | |
| d2hcfa1 | 228 | c.108.1.6 (A:2-229) Hypothetical protein CT1708 {C | 1e-16 | |
| d1zs9a1 | 253 | c.108.1.22 (A:4-256) E-1 enzyme {Human(Homo sapien | 5e-16 | |
| d2hsza1 | 224 | c.108.1.6 (A:1-224) Phosphoglycolate phosphatase G | 9e-16 | |
| d1q7fa_ | 279 | b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (D | 1e-15 | |
| d1q7fa_ | 279 | b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (D | 2e-09 | |
| d1q7fa_ | 279 | b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (D | 2e-06 | |
| d1q7fa_ | 279 | b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (D | 0.001 | |
| d2go7a1 | 204 | c.108.1.6 (A:3-206) Hypothetical protein SP2064 {S | 2e-15 | |
| d1qq5a_ | 245 | c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Xan | 9e-15 | |
| d1zrna_ | 220 | c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Pse | 1e-13 | |
| d1u7pa_ | 164 | c.108.1.17 (A:) Magnesium-dependent phosphatase-1, | 4e-13 | |
| d1z6na1 | 166 | c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Ps | 1e-12 | |
| d1i5ga_ | 144 | c.47.1.10 (A:) Tryparedoxin II {Crithidia fascicul | 1e-12 | |
| d2hdoa1 | 207 | c.108.1.6 (A:1-207) Phosphoglycolate phosphatase { | 2e-12 | |
| d2g80a1 | 225 | c.108.1.22 (A:17-241) Protein UTR4 {Baker's yeast | 2e-12 | |
| d1qyia_ | 380 | c.108.1.13 (A:) Hypothetical protein MW1667 (SA154 | 2e-12 | |
| d1z5ye1 | 136 | c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG | 1e-11 | |
| d1npea_ | 263 | b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId | 2e-11 | |
| d1npea_ | 263 | b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId | 4e-10 | |
| d1npea_ | 263 | b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId | 9e-10 | |
| d1ijqa1 | 266 | b.68.5.1 (A:377-642) Low density lipoprotein (LDL) | 2e-11 | |
| d2ah5a1 | 210 | c.108.1.6 (A:1-210) predicted phosphatase SP0104 { | 2e-11 | |
| d1lu4a_ | 134 | c.47.1.10 (A:) Soluble secreted antigen MPT53 {Myc | 8e-11 | |
| d1zzoa1 | 134 | c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacteri | 5e-10 | |
| d1knga_ | 144 | c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY | 2e-09 | |
| d2gfha1 | 247 | c.108.1.6 (A:1-247) N-acylneuraminate-9-phosphatas | 4e-09 | |
| d1o73a_ | 144 | c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei | 5e-09 | |
| d1rwia_ | 260 | b.68.9.1 (A:) Serine/threonine-protein kinase PknD | 7e-09 | |
| d1rwia_ | 260 | b.68.9.1 (A:) Serine/threonine-protein kinase PknD | 7e-08 | |
| d1rwia_ | 260 | b.68.9.1 (A:) Serine/threonine-protein kinase PknD | 2e-05 | |
| d2feaa1 | 226 | c.108.1.20 (A:2-227) 2-hydroxy-3-keto-5-methylthio | 4e-07 | |
| d1v04a_ | 340 | b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PO | 6e-07 | |
| d1x42a1 | 230 | c.108.1.1 (A:1-230) Hypothetical protein PH0459 {A | 1e-06 | |
| d1st9a_ | 137 | c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA | 1e-06 | |
| d1jfua_ | 176 | c.47.1.10 (A:) Membrane-anchored thioredoxin-like | 2e-06 | |
| d1o8xa_ | 144 | c.47.1.10 (A:) Tryparedoxin I {Crithidia fascicula | 2e-06 | |
| d2dg1a1 | 319 | b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus | 6e-06 | |
| d2dg1a1 | 319 | b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus | 0.002 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-05 | |
| d2cvba1 | 187 | c.47.1.10 (A:2-188) Probable thiol-disulfide isome | 5e-05 | |
| d1j97a_ | 210 | c.108.1.4 (A:) Phosphoserine phosphatase {Archaeon | 7e-05 | |
| d2b7ka1 | 169 | c.47.1.10 (A:111-279) Thioredoxin-like protein Sco | 9e-05 | |
| d1xwaa_ | 111 | c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila m | 9e-05 | |
| d1uula_ | 194 | c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxi | 1e-04 | |
| d1wvia_ | 253 | c.108.1.14 (A:) Putative phosphatase SMU.1415c {St | 1e-04 | |
| d1nnla_ | 217 | c.108.1.4 (A:) Phosphoserine phosphatase {Human (H | 1e-04 | |
| d1wp0a1 | 160 | c.47.1.10 (A:138-297) Thioredoxin-like protein Sco | 2e-04 | |
| d2c4na1 | 250 | c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId | 2e-04 | |
| d1pjxa_ | 314 | b.68.6.1 (A:) Diisopropylfluorophosphatase (phosph | 3e-04 | |
| d2fwha1 | 117 | c.47.1.1 (A:428-544) Thiol:disulfide interchange p | 3e-04 | |
| d2es7a1 | 119 | c.47.1.20 (A:7-125) Hydrogenase-1 operon protein H | 4e-04 | |
| d1yv9a1 | 253 | c.108.1.14 (A:4-256) Putative hydrolase EF1188 {En | 5e-04 | |
| d1nw2a_ | 105 | c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidoc | 5e-04 | |
| d1syra_ | 103 | c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plas | 6e-04 | |
| d1e2ya_ | 167 | c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxi | 8e-04 | |
| d1xzoa1 | 172 | c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 | 0.002 | |
| d2ifqa1 | 105 | c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapien | 0.004 | |
| d2hfda1 | 132 | c.47.1.20 (A:1-132) Hydrogenase-1 operon protein H | 0.004 | |
| d2fpwa1 | 161 | c.108.1.19 (A:3-163) Histidine biosynthesis bifunc | 0.004 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 0.004 |
| >d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: thiol:disulfide oxidoreductase YkuV species: Bacillus subtilis [TaxId: 1423]
Score = 91.9 bits (227), Expect = 3e-22
Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 2/138 (1%)
Query: 430 VPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTV 489
+PE + WLN + + + K ++ FW+ C C +P + KY+D V
Sbjct: 7 MPELTGEKAWLNGEVTR-EQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVV 65
Query: 490 VGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLL 549
VH + +++ D I+ + I+ P+ D D L P + V G+L
Sbjct: 66 A-VHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLR 124
Query: 550 AQLAGEGHRKDLDDLVEA 567
AG K L+ V
Sbjct: 125 HFQAGGSGMKMLEKRVNR 142
|
| >d1swva_ c.108.1.3 (A:) Phosphonoacetaldehyde hydrolase {Bacillus cereus [TaxId: 1396]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Phosphonoacetaldehyde hydrolase-like domain: Phosphonoacetaldehyde hydrolase species: Bacillus cereus [TaxId: 1396]
Score = 92.9 bits (229), Expect = 2e-21
Identities = 45/231 (19%), Positives = 90/231 (38%), Gaps = 21/231 (9%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAA-VDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVK 136
K+ AV+F G + + +++F + GV +T E+ MG + + + + +
Sbjct: 1 KIEAVIFAWAGTTVDYGCFAPLEVFMEIFHKRGVAITAEEARKPMGLLKIDHVRALTEMP 60
Query: 137 GVKG------------FDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKV 184
+ D + + F EI + S G E+I + +G+K+
Sbjct: 61 RIASEWNRVFRQLPTEADIQEMYEEFEEILFAILPRYASP--INGVKEVIASLRERGIKI 118
Query: 185 AVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNV-PTSECI 243
+ R +D A L D +V+ D +P P + + L V P + I
Sbjct: 119 GSTTGYTREMMDIVAKEAALQGYKPDFLVTPDDVPAGRPYPWMCYKNAMELGVYPMNHMI 178
Query: 244 VIEDALAGVQAAKAAQMRCIAVTT-----TLSEERLKEASPSLIRKEIGSV 289
+ D ++ ++ + A M + V L+EE ++ +R++I V
Sbjct: 179 KVGDTVSDMKEGRNAGMWTVGVILGSSELGLTEEEVENMDSVELREKIEVV 229
|
| >d1te2a_ c.108.1.6 (A:) Phosphatase YniC {Escherichia coli [TaxId: 562]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: beta-Phosphoglucomutase-like domain: Phosphatase YniC species: Escherichia coli [TaxId: 562]
Score = 88.7 bits (218), Expect = 2e-20
Identities = 54/219 (24%), Positives = 101/219 (46%), Gaps = 4/219 (1%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLP-FMGTGEANFLGGVASVK 136
++ A +FDMDG+L +SE RA +DV A +GV+++ + LP +G + + +
Sbjct: 2 QILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRRNELPDTLGLRIDMVVDLWYARQ 61
Query: 137 GVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVD 196
G + +R + + PG E + CK +GL V +AS++ ++
Sbjct: 62 PWNGPSRQEVVERVIARAISLV--EETRPLLPGVREAVALCKEQGLLVGLASASPLHMLE 119
Query: 197 ANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAK 256
L L S + + KP P ++L + L V C+ +ED++ G+ A+K
Sbjct: 120 KVLTMFDLRDSFDALASAEKLPYS-KPHPQVYLDCAAKLGVDPLTCVALEDSVNGMIASK 178
Query: 257 AAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDIL 295
AA+MR I V ++ + ++ + ++ D+L
Sbjct: 179 AARMRSIVVPAPEAQNDPRFVLANVKLSSLTELTAKDLL 217
|
| >d2b0ca1 c.108.1.2 (A:8-204) Putative phosphatase YihX {Escherichia coli [TaxId: 562]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: YihX-like domain: Putative phosphatase YihX species: Escherichia coli [TaxId: 562]
Score = 86.7 bits (213), Expect = 7e-20
Identities = 25/185 (13%), Positives = 55/185 (29%), Gaps = 2/185 (1%)
Query: 82 VLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGF 141
+FD+ V+ + + A + + + F MG G S +
Sbjct: 3 YIFDLGNVIVDIDFNRVLGAWSDLTRIPLASLKKSF--HMGEAFHQHERGEISDEAFAEA 60
Query: 142 DSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAA 201
+ P + ++++ + +G +V V S+ +R+
Sbjct: 61 LCHEMALPLSYEQFSHGWQAVFVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEE 120
Query: 202 AGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMR 261
D I + KP I+ + S+ + +D ++ A +
Sbjct: 121 YPEIRDAADHIYLSQDLGMRKPEARIYQHVLQAEGFSPSDTVFFDDNADNIEGANQLGIT 180
Query: 262 CIAVT 266
I V
Sbjct: 181 SILVK 185
|
| >d1cr6a1 c.108.1.2 (A:4-225) Epoxide hydrolase, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: YihX-like domain: Epoxide hydrolase, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 86.0 bits (211), Expect = 2e-19
Identities = 34/204 (16%), Positives = 59/204 (28%), Gaps = 18/204 (8%)
Query: 81 AVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFL----GGVASVK 136
FD+DGVL A + + E G + +
Sbjct: 2 VAAFDLDGVLALPSI--AGAFRRSEEALALPRDFLLGAYQTEFPEGPTEQLMKGKITFSQ 59
Query: 137 GVKGFDSEAAK---------KRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVA 187
V D K F I + L+ K KG +
Sbjct: 60 WVPLMDESYRKSSKACGANLPENFSISQIFSQAMAARSINRPMLQAAIALKKKGFTTCIV 119
Query: 188 SSADRIKVDANLAAAGLPV---SMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIV 244
++ D + A + FD ++ + +KP P I+ L +E +
Sbjct: 120 TNNWLDDGDKRDSLAQMMCELSQHFDFLIESCQVGMIKPEPQIYNFLLDTLKAKPNEVVF 179
Query: 245 IEDALAGVQAAKAAQMRCIAVTTT 268
++D + ++ A+ M I V T
Sbjct: 180 LDDFGSNLKPARDMGMVTILVHNT 203
|
| >d1zd3a1 c.108.1.2 (A:2-224) Epoxide hydrolase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: YihX-like domain: Epoxide hydrolase, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.5 bits (202), Expect = 4e-18
Identities = 35/214 (16%), Positives = 68/214 (31%), Gaps = 15/214 (7%)
Query: 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDF----------LPFMGTGEANF 128
+ A +FD+DGVL + + + + F G +
Sbjct: 2 LRAAVFDLDGVLALPAVFGVLGRTEEALALPRGLLNDAFQKGGPEGATTRLMKGEITLSQ 61
Query: 129 LGGVASVKGVKGFDSEAAKKRFFEIYLDKYAKPNSGI-GFPGALELINQCKSKGLKVAVA 187
+ K ++ + + K S L+ + KG A+
Sbjct: 62 WIPLMEENCRKCSETAKVCLPKNFSIKEIFDKAISARKINRPMLQAALMLRKKGFTTAIL 121
Query: 188 SSADRIKVDANLAAAGLPV---SMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIV 244
++ A L FD ++ + +KP P I+ L SE +
Sbjct: 122 TNTWLDDRAERDGLAQLMCELKMHFDFLIESCQVGMVKPEPQIYKFLLDTLKASPSEVVF 181
Query: 245 IEDALAGVQAAKAAQMRCIAVTTT-LSEERLKEA 277
++D A ++ A+ M I V T + + L++
Sbjct: 182 LDDIGANLKPARDLGMVTILVQDTDTALKELEKV 215
|
| >d2fi1a1 c.108.1.3 (A:4-190) Putative hydrolase SP0805 {Streptococcus pneumoniae [TaxId: 1313]} Length = 187 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Phosphonoacetaldehyde hydrolase-like domain: Putative hydrolase SP0805 species: Streptococcus pneumoniae [TaxId: 1313]
Score = 80.9 bits (198), Expect = 6e-18
Identities = 30/200 (15%), Positives = 67/200 (33%), Gaps = 16/200 (8%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKG 137
K ++D+ G L ++ E S A V+ A G+ + +
Sbjct: 2 KYHDYIWDLGGTLLDNYETSTAAFVETLALYGITQDHDSVYQALKVSTPFA--------- 52
Query: 138 VKGFDSEAAKKRFFEIYLDKYAKPNSGIG-FPGALELINQCKSKGLKVAVASSADRIKVD 196
+ F E Y + A+ F G +L+ ++G + + S + ++
Sbjct: 53 --IETFAPNLENFLEKYKENEARELEHPILFEGVSDLLEDISNQGGRHFLVSHRNDQVLE 110
Query: 197 ANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAK 256
+ S+ P+ L + + S +VI D ++A +
Sbjct: 111 ILEKTSIAAYFTEVVTSSSGFKRKPN--PESMLYLREKYQI--SSGLVIGDRPIDIEAGQ 166
Query: 257 AAQMRCIAVTTTLSEERLKE 276
AA + T+ ++ ++ +
Sbjct: 167 AAGLDTHLFTSIVNLRQVLD 186
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Score = 78.8 bits (193), Expect = 1e-17
Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 2/138 (1%)
Query: 430 VPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTV 489
VP + L + P K K ++ FW C C+ L E + K +
Sbjct: 1 VPHTLSTLKTADNRPASVY-LKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANL 59
Query: 490 VGVHSAKFDNEKDLEAIRNAVLRYGI-SHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKL 548
+ V S F +EK + PVV D + + L ++ +P++A++G +G +
Sbjct: 60 ITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDV 119
Query: 549 LAQLAGEGHRKDLDDLVE 566
+ G + L+
Sbjct: 120 QRIVKGSINEAQALALIR 137
|
| >d1o08a_ c.108.1.6 (A:) beta-Phosphoglucomutase {Lactococcus lactis [TaxId: 1358]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: beta-Phosphoglucomutase-like domain: beta-Phosphoglucomutase species: Lactococcus lactis [TaxId: 1358]
Score = 79.1 bits (193), Expect = 6e-17
Identities = 58/217 (26%), Positives = 96/217 (44%), Gaps = 11/217 (5%)
Query: 81 AVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDF---LPFMGTGEANFLGGVASVKG 137
AVLFD+DGV+ ++ E RA + E+G+ F L + ++ + K
Sbjct: 4 AVLFDLDGVITDTAEYHFRAWKALAEEIGINGVDRQFNEQLKGVSREDSLQKILDLADKK 63
Query: 138 VKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDA 197
V + + KR + Y+ + +PG L+L+ +S +K+A+AS++
Sbjct: 64 VSAEEFKELAKRKNDNYVKMIQDVSPADVYPGILQLLKDLRSNKIKIALASASKNGPFLL 123
Query: 198 NLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKA 257
FDAI KPAPDIF++A+ + V SE I +ED+ AG+QA K
Sbjct: 124 ERMNLT---GYFDAIADPAEVAASKPAPDIFIAAAHAVGVAPSESIGLEDSQAGIQAIKD 180
Query: 258 AQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDI 294
+ I V E L + +I + +L +
Sbjct: 181 SGALPIGVG---RPEDLGDD--IVIVPDTSHYTLEFL 212
|
| >d2fdra1 c.108.1.6 (A:3-224) Hypothetical protein Atu0790 {Agrobacterium tumefaciens [TaxId: 358]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: beta-Phosphoglucomutase-like domain: Hypothetical protein Atu0790 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 78.3 bits (191), Expect = 8e-17
Identities = 39/207 (18%), Positives = 72/207 (34%), Gaps = 9/207 (4%)
Query: 81 AVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKG 140
++FD DGVL +SE + + + E G ++VE+ +
Sbjct: 4 LIIFDCDGVLVDSEIIAAQVESRLLTEAGYPISVEEMGERFAGMTWKN-ILLQVESEASI 62
Query: 141 FDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLA 200
S + + ++ + + I + SS+ R+ +
Sbjct: 63 PLSASLLDKSEKLLDMRLERDVKIIDGVKFALSRLTTP---RCICSNSSSHRLDMMLTKV 119
Query: 201 AAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQM 260
+ + +KP PDIFL + V +V+ED++ G+ A+AA M
Sbjct: 120 GLKPYFAPHIYSAKDLGADRVKPKPDIFLHGAAQFGVSPDRVVVVEDSVHGIHGARAAGM 179
Query: 261 RCIAVTT-----TLSEERLKEASPSLI 282
R I T +RL +A +
Sbjct: 180 RVIGFTGASHTYPSHADRLTDAGAETV 206
|
| >d2hcfa1 c.108.1.6 (A:2-229) Hypothetical protein CT1708 {Chlorobium tepidum [TaxId: 1097]} Length = 228 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: beta-Phosphoglucomutase-like domain: Hypothetical protein CT1708 species: Chlorobium tepidum [TaxId: 1097]
Score = 78.3 bits (191), Expect = 1e-16
Identities = 48/224 (21%), Positives = 76/224 (33%), Gaps = 9/224 (4%)
Query: 82 VLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGF 141
VLFD+DG L E +RR D E+ F G + + V S G++
Sbjct: 5 VLFDIDGTLLKVESMNRRVLADALIEVYGTEGSTGSHDFSGKMDGAIIYEVLSNVGLERA 64
Query: 142 DSEAAKKRFFEIYLD---KYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDAN 198
+ + E Y+ + A+ G EL++ S+ + + + +
Sbjct: 65 EIADKFDKAKETYIALFRERARREDITLLEGVRELLDALSSRSDVLLGLLTGNFEASGRH 124
Query: 199 LAAAGLPVSMFDAIVSADAFENLKPAPDIFLSA---SKILNVPTSECIVIEDALAGVQAA 255
F AD + P I L N S+ ++I D ++ A
Sbjct: 125 KLKLPGIDHYFPFGAFADDALDRNELPHIALERARRMTGANYSPSQIVIIGDTEHDIRCA 184
Query: 256 KAAQMRCIAVTT-TLSEERLKEASPSLIRKEIGSVS--LNDILT 296
+ R IAV T + E L P + K L ILT
Sbjct: 185 RELDARSIAVATGNFTMEELARHKPGTLFKNFAETDEVLASILT 228
|
| >d1zs9a1 c.108.1.22 (A:4-256) E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Enolase-phosphatase E1 domain: E-1 enzyme species: Human(Homo sapiens) [TaxId: 9606]
Score = 76.8 bits (187), Expect = 5e-16
Identities = 23/222 (10%), Positives = 52/222 (23%), Gaps = 34/222 (15%)
Query: 78 KVSAVLFDMDGVLCNSEEPS-------RRAAVDVFAEMGVEVTVEDFLPFM--------- 121
+V+ +L D++G + E + + +
Sbjct: 6 EVTVILLDIEGTTTPIAFVKDILFPYIEENVKEYLQTHWEEEECQQDVSLLRKQAEEDAH 65
Query: 122 --GTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDKYAKPNSGIG------------- 166
G G + + + K G
Sbjct: 66 LDGAVPIPAASGNGVDDLQQMIQAVVDNVCWQMSLDRKTTALKQLQGHMWRAAFTAGRMK 125
Query: 167 ---FPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKP 223
F + + + + G+KV + SS + + D K
Sbjct: 126 AEFFADVVPAVRKWREAGMKVYIYSSGSVEAQKLLFGHSTEGDILELVDGHFDTKIGHKV 185
Query: 224 APDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAV 265
+ + + + T+ + + D AA+ A + V
Sbjct: 186 ESESYRKIADSIGCSTNNILFLTDVTREASAAEEADVHVAVV 227
|
| >d2hsza1 c.108.1.6 (A:1-224) Phosphoglycolate phosphatase Gph {Haemophilus somnus [TaxId: 731]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: beta-Phosphoglucomutase-like domain: Phosphoglycolate phosphatase Gph species: Haemophilus somnus [TaxId: 731]
Score = 75.3 bits (183), Expect = 9e-16
Identities = 40/224 (17%), Positives = 77/224 (34%), Gaps = 12/224 (5%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKG 137
+ + FD+DG L NS + ++ + E+ + A+ L A
Sbjct: 3 QFKLIGFDLDGTLVNSLPDLALSINSALKDVNLPQASENLVMTWIGNGADVLSQRAVDWA 62
Query: 138 VKGFDSEAAKKRFFEIYLDKYA-----KPNSGIGFPGALELINQCKSKGLKVAVASSADR 192
K + E + F N +P E + K++G +AV ++
Sbjct: 63 CKQAEKELTEDEFKYFKRQFGFYYGENLCNISRLYPNVKETLEALKAQGYILAVVTNKPT 122
Query: 193 IKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGV 252
V L A G+ +F ++ + +KP P F + + + + D+ +
Sbjct: 123 KHVQPILTAFGID-HLFSEMLGGQSLPEIKPHPAPFYYLCGKFGLYPKQILFVGDSQNDI 181
Query: 253 QAAKAAQMRCIAVTTTL-SEERLKEASPSLIRKEIGSVSLNDIL 295
AA +A + +T + ++ P I DIL
Sbjct: 182 FAAHSAGCAVVGLTYGYNYNIPIAQSKPDWIFD-----DFADIL 220
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 279 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 76.2 bits (186), Expect = 1e-15
Identities = 40/282 (14%), Positives = 84/282 (29%), Gaps = 23/282 (8%)
Query: 642 GEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKG 701
GE G+ +G F P G+A NA+ ++ VADT NH ++ D G +
Sbjct: 13 GEFGVMEGQF-----TEPSGVAVNAQNDI-IVADTNNHRIQIFDKEGRFKFQFGECGKRD 66
Query: 702 SDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERN 761
S + + V + ++ I + + +
Sbjct: 67 SQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGR 126
Query: 762 LNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNL 821
+ + + +
Sbjct: 127 IIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVV--VNDKQEIFISDNRAHCVKVFN 184
Query: 822 FKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHK-IKKLDPASNRVSTLAGIGKAG 880
++ +G E + +P+GV NG+I +AD++N+ + +S L K
Sbjct: 185 YEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVK-- 242
Query: 881 FKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNI--IRYLDL 920
++ + +G++ +A + + RY+ L
Sbjct: 243 ----------HAQCFDVALMDDGSVVLASKDYRLYIYRYVQL 274
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 279 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 58.1 bits (139), Expect = 2e-09
Identities = 34/272 (12%), Positives = 73/272 (26%), Gaps = 34/272 (12%)
Query: 600 LKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRP 659
P +A++ N + ++D+N++RI + D +G F Q G G+ RD
Sbjct: 22 FTEPSGVAVNA-QNDIIVADTNNHRIQIFDKEGRFKFQFGECGK---RDSQLLYPNRVAV 77
Query: 660 QGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPW 719
+ + + FV T+ + + G +
Sbjct: 78 VRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRV 137
Query: 720 DVCYKPINEKVYIAMA---------GQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNT 770
+ + N + + E D YE
Sbjct: 138 IIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEG 197
Query: 771 SFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGM 830
P G+ EI +AD+ ++ + + G + +
Sbjct: 198 ITNYPIGVG-INSNGEILIADNHNNFNLTIFTQDG-------------QLISALESKVKH 243
Query: 831 GSEVLLQHPLGVYCAKNGQIYVADSYNHKIKK 862
V +G + +A ++++
Sbjct: 244 AQ------CFDVALMDDGSVVLAS-KDYRLYI 268
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 279 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 48.9 bits (115), Expect = 2e-06
Identities = 17/57 (29%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Query: 823 KFGDRDGMGSEV-LLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGK 878
KFG G P GV I VAD+ NH+I+ D GK
Sbjct: 11 KFG---EFGVMEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGK 64
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 279 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 39.6 bits (91), Expect = 0.001
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 877 GKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLN 921
G+ G +G Q +EP+G+ ++ +ADTNN+ I+ D
Sbjct: 13 GEFGVMEG-----QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE 52
|
| >d2go7a1 c.108.1.6 (A:3-206) Hypothetical protein SP2064 {Streptococcus pneumoniae [TaxId: 1313]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: beta-Phosphoglucomutase-like domain: Hypothetical protein SP2064 species: Streptococcus pneumoniae [TaxId: 1313]
Score = 74.1 bits (180), Expect = 2e-15
Identities = 28/188 (14%), Positives = 60/188 (31%), Gaps = 7/188 (3%)
Query: 80 SAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVK 139
+A ++D+DG L +S E + FA+ + E F+ L +
Sbjct: 2 TAFIWDLDGTLLDSYEAILSGIEETFAQFSIPYDKEKVREFIFKYSVQDLLVRVAEDRNL 61
Query: 140 GFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANL 199
+ + + PGA E++ G++ + +
Sbjct: 62 DVEVLNQVRAQSLAEKNAQVVL-----MPGAREVLAWADESGIQQFIYTHKGNNAFTIL- 115
Query: 200 AAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQ 259
S F I+++ + KP+P+ + + I D V+ A+ +
Sbjct: 116 -KDLGVESYFTEILTSQSGFVRKPSPEAATYLLDKYQLNSDNTYYIGDRTLDVEFAQNSG 174
Query: 260 MRCIAVTT 267
++ I
Sbjct: 175 IQSINFLE 182
|
| >d1qq5a_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Xanthobacter autotrophicus [TaxId: 280]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: HAD-related domain: L-2-Haloacid dehalogenase, HAD species: Xanthobacter autotrophicus [TaxId: 280]
Score = 72.9 bits (177), Expect = 9e-15
Identities = 41/221 (18%), Positives = 66/221 (29%), Gaps = 6/221 (2%)
Query: 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFM-GTGEANFLGGVASVKG 137
+ AV+FD G L + + A + G +T + + +G A
Sbjct: 2 IKAVVFDAYGTLFDVQ-SVADATERAYPGRGEYITQVWRQKQLEYSWLRALMGRYADFWS 60
Query: 138 VKGFDSEAAKKRFFEIYLDKYAK---PNSGIGFPGALELINQCKSKGLKVAVASSADRIK 194
V + + P + LK A+ S+
Sbjct: 61 VTREALAYTLGTLGLEPDESFLADMAQAYNRLTPYPDAAQCLAELAPLKRAILSNGAPDM 120
Query: 195 VDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQA 254
+ A L A FDA++S DA KP PD + ++L V +E + + V
Sbjct: 121 LQA-LVANAGLTDSFDAVISVDAKRVFKPHPDSYALVEEVLGVTPAEVLFVSSNGFDVGG 179
Query: 255 AKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDIL 295
AK V E +E I +L
Sbjct: 180 AKNFGFSVARVARLSQEALARELVSGTIAPLTMFKALRMRE 220
|
| >d1zrna_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., strain YL [TaxId: 306]} Length = 220 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: HAD-related domain: L-2-Haloacid dehalogenase, HAD species: Pseudomonas sp., strain YL [TaxId: 306]
Score = 69.1 bits (167), Expect = 1e-13
Identities = 35/223 (15%), Positives = 71/223 (31%), Gaps = 13/223 (5%)
Query: 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGV 138
+ + FD+ G L + + F G E++ + L
Sbjct: 2 IKGIAFDLYGTLFDVH-SVVGRCDEAFPGRGREISALWRQKQLEYTWLRSLMNRYVNFQQ 60
Query: 139 KGFDSEAAKKRFFEIYLDKYAK------PNSGIGFPGALELINQCKSKGLKVAVASSADR 192
D+ R + LD + F + + + K +GLK+A+ S+
Sbjct: 61 ATEDALRFTCRHLGLDLDARTRSTLCDAYLRLAPFSEVPDSLRELKRRGLKLAILSNGSP 120
Query: 193 IKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGV 252
+DA + + FD ++S D + KP ++ A + L + S + +
Sbjct: 121 QSIDA-VVSHAGLRDGFDHLLSVDPVQVYKPDNRVYELAEQALGLDRSAILFVASNAWDA 179
Query: 253 QAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDIL 295
A+ + T + +P SL ++
Sbjct: 180 TGARYFGFPTCWINRTGNVFEEMGQTPDWEVT-----SLRAVV 217
|
| >d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Magnesium-dependent phosphatase-1, Mdp1 domain: Magnesium-dependent phosphatase-1, Mdp1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 66.4 bits (161), Expect = 4e-13
Identities = 28/197 (14%), Positives = 49/197 (24%), Gaps = 50/197 (25%)
Query: 81 AVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKG 140
+FD+D L VD +
Sbjct: 7 LAVFDLDYTLWPFW-------VDTHVDPPF------------------------------ 29
Query: 141 FDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLA 200
K D+ + +P E++ + +S G+ VA AS I+ L
Sbjct: 30 ------HKSSDGTVRDRRGQNIQL--YPEVPEVLGRLQSLGVPVAAASRTSEIQGANQLL 81
Query: 201 AAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQM 260
F F VP S+ + +D + +
Sbjct: 82 ELFDLGKYFIQR-----EIYPGSKVTHFERLHHKTGVPFSQMVFFDDENRNIIDVGRLGV 136
Query: 261 RCIAVTTTLSEERLKEA 277
CI + +S + L +
Sbjct: 137 TCIHIRDGMSLQTLTQG 153
|
| >d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein PA1234 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 65.0 bits (157), Expect = 1e-12
Identities = 24/161 (14%), Positives = 53/161 (32%), Gaps = 9/161 (5%)
Query: 407 QSERIQQFVNYISDVENRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCI 466
E FV + E + + L +A + + ++ + +L C
Sbjct: 10 IGEDFAAFVGHGLATEQGAVARFRQKLESNG--LPSALTERLQRIERRYRLLVAGEMWCP 67
Query: 467 NCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMN 526
+C L L+F ++ ++ ++ + + +R + I+ P+V D
Sbjct: 68 DCQINLAALDFAQRLQPNIELAIISK-------GRAEDDLRQRLALERIAIPLVLVLDEE 120
Query: 527 LWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEA 567
P + G L A AG+ + D++
Sbjct: 121 FNLLGRFVERPQAVLDGGPQALAAYKAGDYLEHAIGDVLAI 161
|
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Score = 64.1 bits (155), Expect = 1e-12
Identities = 26/134 (19%), Positives = 38/134 (28%), Gaps = 8/134 (5%)
Query: 433 FPAKLDWLNTAPLQFR-RDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVG 491
FP + L A L GK V F C P L K + +
Sbjct: 7 FPYSTNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKK----N 62
Query: 492 VHSAKFDNEKDLEAIRNAVLRYGISHPVVND--GDMNLWRELGVNSWPTFAVVGPN-GKL 548
++ E ++ + D G L V S PT V + G +
Sbjct: 63 FEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNI 122
Query: 549 LAQLAGEGHRKDLD 562
+ A KD +
Sbjct: 123 ITTQARTMVVKDPE 136
|
| >d2hdoa1 c.108.1.6 (A:1-207) Phosphoglycolate phosphatase {Lactobacillus plantarum [TaxId: 1590]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: beta-Phosphoglucomutase-like domain: Phosphoglycolate phosphatase species: Lactobacillus plantarum [TaxId: 1590]
Score = 65.7 bits (158), Expect = 2e-12
Identities = 35/218 (16%), Positives = 59/218 (27%), Gaps = 15/218 (6%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKG 137
A++FD+DG L NS+ +V A G + + +
Sbjct: 2 TYQALMFDIDGTLTNSQPAYTTVMREVLATYGKPFSPAQAQKTFPMAAEQAMTELGIAAS 61
Query: 138 VKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDA 197
+ Y P F + + S R
Sbjct: 62 EFDHFQAQYEDVMASHYDQIELYPGITSLFEQLPSELRLGIVTSQRRNELESGMRSYPFM 121
Query: 198 NLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKA 257
+SAD KP P L+A + +NV + I D+++ Q A+A
Sbjct: 122 M---------RMAVTISADDTPKRKPDPLPLLTALEKVNVAPQNALFIGDSVSDEQTAQA 172
Query: 258 AQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDIL 295
A + + + + DIL
Sbjct: 173 ANVDFGLAVWGMDPNADHQKVAHRFQ------KPLDIL 204
|
| >d2g80a1 c.108.1.22 (A:17-241) Protein UTR4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Enolase-phosphatase E1 domain: Protein UTR4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.6 bits (158), Expect = 2e-12
Identities = 23/201 (11%), Positives = 53/201 (26%), Gaps = 13/201 (6%)
Query: 78 KVSAVLFDMDGVLCNSEEP-------SRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLG 130
S L D++G +C + + + V + L L
Sbjct: 2 NYSTYLLDIEGTVCPISFVKETLFPYFTNKVPQLVQQDTRDSPVSNILSQFHIDNKEQLQ 61
Query: 131 GVASVKGVKGFDSEAAKKRFFEIYLDKYAK-PNSGIGFPGALELINQCKSKGLKVAVASS 189
K K+ ++ Y + A++ I + K + + +
Sbjct: 62 AHILELVAKDVKDPILKQLQGYVWAHGYESGQIKAPVYADAIDFIKRKKRVFIYSSGSVK 121
Query: 190 ADRIKVDANLAAAGLPVSMFDAIVSADAFENL-----KPAPDIFLSASKILNVPTSECIV 244
A ++ D D + ++ K + + + + SE +
Sbjct: 122 AQKLLFGYVQDPNAPAHDSLDLNSYIDGYFDINTSGKKTETQSYANILRDIGAKASEVLF 181
Query: 245 IEDALAGVQAAKAAQMRCIAV 265
+ D + AA +
Sbjct: 182 LSDNPLELDAAAGVGIATGLA 202
|
| >d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546) {Staphylococcus aureus [TaxId: 1280]} Length = 380 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Hypothetical protein MW1667 (SA1546) domain: Hypothetical protein MW1667 (SA1546) species: Staphylococcus aureus [TaxId: 1280]
Score = 67.5 bits (164), Expect = 2e-12
Identities = 23/147 (15%), Positives = 46/147 (31%), Gaps = 32/147 (21%)
Query: 167 FPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENL----- 221
L+N K G ++ +A+ + G + F+A A A + L
Sbjct: 217 VDEVKVLLNDLKGAGFELGIATGRPYTETVVPFENLG-LLPYFEADFIATASDVLEAENM 275
Query: 222 --------KPAPDIFLSA--------------SKILNVPTSECIVIEDALAGVQAAKAAQ 259
KP P +++A + V + ++ D+LA + +A+
Sbjct: 276 YPQARPLGKPNPFSYIAALYGNNRDKYESYINKQDNIVNKDDVFIVGDSLADLLSAQKIG 335
Query: 260 MRCIAVTT----TLSEERLKEASPSLI 282
I T + L+ +
Sbjct: 336 ATFIGTLTGLKGKDAAGELEAHHADYV 362
|
| >d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Escherichia coli [TaxId: 562]
Score = 61.2 bits (147), Expect = 1e-11
Identities = 23/137 (16%), Positives = 53/137 (38%), Gaps = 12/137 (8%)
Query: 436 KLDWLNTAPLQFRRDL--KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVH 493
+L+ L+ ++ D+ +GK V+L+ W C L L + +
Sbjct: 1 RLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSAQGIRVVG------ 54
Query: 494 SAKFDNEKDLEAIRNAVLRYGISHPVVNDG-DMNLWRELGVNSWPTFAVVGPNGKLLAQL 552
+ + D + + + G + + D L +LGV P ++ NG + +
Sbjct: 55 ---MNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRH 111
Query: 553 AGEGHRKDLDDLVEAAL 569
AG+ + + ++ ++
Sbjct: 112 AGDLNPRVWEEEIKPLW 128
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Score = 63.7 bits (154), Expect = 2e-11
Identities = 40/283 (14%), Positives = 79/283 (27%), Gaps = 64/283 (22%)
Query: 587 LEKDNDPRLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGL 646
++K P K LA D ++ ++ +D + I L G I
Sbjct: 22 MKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ----- 76
Query: 647 RDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQG 706
P+G+A + ++ D++ + R L G
Sbjct: 77 --------DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGL------- 121
Query: 707 GEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSS 766
+P + P+ +Y + + DG R
Sbjct: 122 ---------VNPRGIVTDPVRGNLYWTDWNRDNPKIET--------SHMDGTNRR----I 160
Query: 767 SLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGD 826
+ P+G++ ++ D+ + LN G R + G
Sbjct: 161 LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG------------- 207
Query: 827 RDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNR 869
LQ+P V + +Y D + + +D A ++
Sbjct: 208 ---------LQYPFAV-TSYGKNLYYTDWKTNSVIAMDLAISK 240
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Score = 59.5 bits (143), Expect = 4e-10
Identities = 34/222 (15%), Positives = 64/222 (28%), Gaps = 44/222 (19%)
Query: 585 LSLEKDNDPRLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEE 644
SL + L P +A+D L +F +DS +RI V +DG + +
Sbjct: 63 ASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT--- 119
Query: 645 GLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDY 704
P+G+ + + LY D + D
Sbjct: 120 ----------GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETS--------------HMDG 155
Query: 705 QGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNG 764
L P + + + ++ AG H+ E G
Sbjct: 156 TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRA-ECLNPAQ--------------PG 200
Query: 765 SSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGG 806
+ P ++ +Y D +++S+ A++L
Sbjct: 201 RRKVLEGLQYPFAVTSYGKN--LYYTDWKTNSVIAMDLAISK 240
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Score = 58.3 bits (140), Expect = 9e-10
Identities = 41/302 (13%), Positives = 78/302 (25%), Gaps = 71/302 (23%)
Query: 620 SNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENH 679
+ +I L+ N + + +F GLA++ ++Y D
Sbjct: 7 AQTGKIERLPLERNTMKKT--------EAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEP 58
Query: 680 ALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQ 739
++ T Q L SP + + ++ + +
Sbjct: 59 SIGRASLHGGEPTT----------------IIRQDLGSPEGIALDHLGRTIFWTDSQLDR 102
Query: 740 IWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRA 799
I R +T P GI P +Y D + +
Sbjct: 103 IEVAKMDGTQRRVL--------------FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKI 148
Query: 800 LNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHK 859
G G +G+ + A + Q+ D+ H+
Sbjct: 149 -------ETSHMDGTNRRILAQDNLGLPNGL-----------TFDAFSSQLCWVDAGTHR 190
Query: 860 IKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLD 919
+ L+PA + L P + + NL+ D N + +D
Sbjct: 191 AECLNPAQPGRRK--------------VLEGLQYPFA-VTSYGKNLYYTDWKTNSVIAMD 235
Query: 920 LN 921
L
Sbjct: 236 LA 237
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.8 bits (154), Expect = 2e-11
Identities = 49/308 (15%), Positives = 94/308 (30%), Gaps = 71/308 (23%)
Query: 591 NDPRLFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGS 650
++ L+ L ++ +NR++ SD + I T LD V SS + +
Sbjct: 20 SEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---SSYDTVISRD- 75
Query: 651 FDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKG 710
P GLA + + +Y D+ + D +TL
Sbjct: 76 -----IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN------------ 118
Query: 711 TSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNT 770
+ P + P++ +Y G + ++GV
Sbjct: 119 ----GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV-------------TE 161
Query: 771 SFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGM 830
+ P+GI+L +Y DS+ SI ++++ G + + +
Sbjct: 162 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR-------------- 207
Query: 831 GSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQ 890
L HP + +++ D N I + + D LA
Sbjct: 208 -----LAHPFSLAVF-EDKVFWTDIINEAIFSAN-------------RLTGSDVNLLAEN 248
Query: 891 LSEPAGII 898
L P ++
Sbjct: 249 LLSPEDMV 256
|
| >d2ah5a1 c.108.1.6 (A:1-210) predicted phosphatase SP0104 {Streptococcus pneumoniae [TaxId: 1313]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: beta-Phosphoglucomutase-like domain: predicted phosphatase SP0104 species: Streptococcus pneumoniae [TaxId: 1313]
Score = 62.5 bits (150), Expect = 2e-11
Identities = 33/219 (15%), Positives = 64/219 (29%), Gaps = 16/219 (7%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKG 137
++A+ FD+DG L +S A F E+GV + K
Sbjct: 3 SITAIFFDLDGTLVDSSIGIHNAFTYTFKELGVPSPDAKTIRGFMGPPLESSFATCLSKD 62
Query: 138 VKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDA 197
+ + + + + FP ++L+ + S + D
Sbjct: 63 QISEAVQIYRSYYKAKGIYEAQL------FPQIIDLLEELSSSYPLYITTTKDTSTAQDM 116
Query: 198 NLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKA 257
FD I + K A + + + I+I D + A+
Sbjct: 117 A--KNLEIHHFFDGIYGSSPEAPHKADVIHQ--ALQTHQLAPEQAIIIGDTKFDMLGARE 172
Query: 258 AQMRCIAVTT-TLSEERLKEASPSLIRKEIGSVSLNDIL 295
++ +A+T + L P I ++L
Sbjct: 173 TGIQKLAITWGFGEQADLLNYQPDYIAH-----KPLEVL 206
|
| >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Soluble secreted antigen MPT53 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 58.8 bits (141), Expect = 8e-11
Identities = 30/139 (21%), Positives = 48/139 (34%), Gaps = 12/139 (8%)
Query: 431 PEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVV 490
+F L+ AP L+GK VL FWT C C P L + + F +
Sbjct: 5 LQF--TATTLSGAPFDGA-SLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGI 61
Query: 491 GVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKL-- 548
+ ++ V +Y ++ +ND D +W V P F +G
Sbjct: 62 ATRADVGAM-------QSFVSKYNLNFTNLNDADGVIWARYNVPWQPAFVFYRADGTSTF 114
Query: 549 LAQLAGEGHRKDLDDLVEA 567
+ + +L V A
Sbjct: 115 VNNPTAAMSQDELSGRVAA 133
|
| >d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Lipoprotein DsbF species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 56.2 bits (134), Expect = 5e-10
Identities = 30/142 (21%), Positives = 50/142 (35%), Gaps = 10/142 (7%)
Query: 426 TTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDM 485
T P +F L+ L GK VL FW C C P + + + ++
Sbjct: 1 TVPAQLQF--SAKTLDGHDFHGE-SLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEV 57
Query: 486 PFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPN 545
F V ++ + + + D D ++W GV P +A V P+
Sbjct: 58 TFVGVAGLDQVPAMQEFVNKYPV------KTFTQLADTDGSVWANFGVTQQPAYAFVDPH 111
Query: 546 GKLLAQLAGEGHRKDLDDLVEA 567
G + + G + +L V A
Sbjct: 112 GN-VDVVRGRMSQDELTRRVTA 132
|
| >d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Bradyrhizobium japonicum [TaxId: 375]
Score = 54.8 bits (130), Expect = 2e-09
Identities = 31/147 (21%), Positives = 51/147 (34%), Gaps = 16/147 (10%)
Query: 430 VPEFPAK------LDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYK 483
P+ D + L KGKV +++ W C+ C P L L K +
Sbjct: 3 APQTALPPLEGLQADNVQVPGLDPA-AFKGKVSLVNVWASWCVPCHDEAPLLTELGKDKR 61
Query: 484 DMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGIS-HPVVNDGDMNLWRELGVNSWPTFAVV 542
+ + + + R + RYG V D + E GV P VV
Sbjct: 62 FQLVGI--------NYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPETFVV 113
Query: 543 GPNGKLLAQLAGEGHRKDLDDLVEAAL 569
G G ++ +L G +L ++ +
Sbjct: 114 GREGTIVYKLVGPITPDNLRSVLLPQM 140
|
| >d2gfha1 c.108.1.6 (A:1-247) N-acylneuraminate-9-phosphatase NANP {Mouse (Mus musculus) [TaxId: 10090]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: beta-Phosphoglucomutase-like domain: N-acylneuraminate-9-phosphatase NANP species: Mouse (Mus musculus) [TaxId: 10090]
Score = 56.0 bits (133), Expect = 4e-09
Identities = 39/247 (15%), Positives = 80/247 (32%), Gaps = 36/247 (14%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKG 137
+V AV FD+D L ++ SRR ++V + + ++ + L
Sbjct: 5 RVRAVFFDLDNTLIDTAGASRRGMLEVIKLLQSKYHYKEEAEIICDKVQVKLSKECFHPY 64
Query: 138 VKGF-------------------DSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCK 178
D+ + + ++ + I ++ + +
Sbjct: 65 STCITDVRTSHWEEAIQETKGGADNRKLAEECYFLWKSTRLQHM--ILADDVKAMLTELR 122
Query: 179 SKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVP 238
+ + + + + A S FDAIV + KPAP IF +L V
Sbjct: 123 KEVRLLLLTN--GDRQTQREKIEACACQSYFDAIVIGGEQKEEKPAPSIFYHCCDLLGVQ 180
Query: 239 TSECIVIEDAL-AGVQAAKAAQMRCIAVTTTLSEERLKEAS------------PSLIRKE 285
+C+++ D L +Q A ++ L + P+L++
Sbjct: 181 PGDCVMVGDTLETDIQGGLNAGLKATVWINKSGRVPLTSSPMPHYMVSSVLELPALLQSI 240
Query: 286 IGSVSLN 292
VS++
Sbjct: 241 DCKVSMS 247
|
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Score = 53.8 bits (128), Expect = 5e-09
Identities = 24/136 (17%), Positives = 38/136 (27%), Gaps = 10/136 (7%)
Query: 430 VPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTV 489
+P L L L GK V L F C C P L +K+
Sbjct: 8 LPGATNLLSKSGEVSLG---SLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAK--- 61
Query: 490 VGVHSAKFDNEKDLEAIRNAVLRYGISHPVV--NDGDMNLWRELGVNSWPTFAVVGPN-G 546
+++ + + L + GV S PT + + G
Sbjct: 62 -NFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTG 120
Query: 547 KLLAQLAGEGHRKDLD 562
++ A +D D
Sbjct: 121 AIIGTQARTRVIEDPD 136
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 260 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 55.6 bits (132), Expect = 7e-09
Identities = 40/274 (14%), Positives = 67/274 (24%), Gaps = 42/274 (15%)
Query: 603 PGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGL 662
P +A+D N S+ + R+V + +G +PQGL
Sbjct: 16 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNG-------------LYQPQGL 62
Query: 663 AYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVC 722
A + + N TV G + V
Sbjct: 63 AVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVV 122
Query: 723 YKPINEKVYIAMAGQHQIWEHSTV---DGVTRAFSGDGYERNLNGSSSLNTSFAQPSGIS 779
K + G D + S N + I+
Sbjct: 123 KLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDIT 182
Query: 780 LSPDF-----MEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEV 834
+YV + ++ + L + S +L
Sbjct: 183 APWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTG-------------------- 222
Query: 835 LLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASN 868
L PL V + +YVAD N ++ KL +
Sbjct: 223 -LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 255
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 260 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 52.5 bits (124), Expect = 7e-08
Identities = 34/268 (12%), Positives = 70/268 (26%), Gaps = 33/268 (12%)
Query: 656 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLL 715
P G+A ++ N+ YV + T T+ L
Sbjct: 13 RLSPSGVAVDSAGNV-YVTSEGMYGRVVKLATGSTGTTVLPFNG---------------L 56
Query: 716 NSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQP 775
P + + + + F G Y L + A
Sbjct: 57 YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADR 116
Query: 776 SGISLSPDFMEIYVADSES----SSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMG 831
+ + + + G+ + D L + +
Sbjct: 117 GNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL 176
Query: 832 SEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQL 891
+ P G+ + G +YV + +++ KL S + L G L
Sbjct: 177 PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTG-------------L 223
Query: 892 SEPAGIIEAQNGNLFIADTNNNIIRYLD 919
+ P + + +++AD N+ + L
Sbjct: 224 NTPLAVAVDSDRTVYVADRGNDRVVKLT 251
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 260 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 45.2 bits (105), Expect = 2e-05
Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 14/72 (19%)
Query: 621 NHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHA 680
N N++V + +G N P +A ++ + + YVAD N
Sbjct: 201 NTNQVVKLLAGSTTSTVLPFTG-------------LNTPLAVAVDSDRTV-YVADRGNDR 246
Query: 681 LREIDFVNDTVR 692
+ ++ +
Sbjct: 247 VVKLTSLEHHHH 258
|
| >d2feaa1 c.108.1.20 (A:2-227) 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX {Bacillus subtilis [TaxId: 1423]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: MtnX-like domain: 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX species: Bacillus subtilis [TaxId: 1423]
Score = 50.0 bits (118), Expect = 4e-07
Identities = 31/226 (13%), Positives = 56/226 (24%), Gaps = 34/226 (15%)
Query: 82 VLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGF 141
++ D DG + ++ + + + + + GV G
Sbjct: 7 IICDFDGTITMND------NIINIMKTFAPPEWMALKDGVLSKTLSIKEGV-------GR 53
Query: 142 DSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAA 201
E + G E + + V S V L
Sbjct: 54 MFGLLPSSLKEEITSFVLEDA--KIREGFREFVAFINEHEIPFYVISGGMDFFVYPLLEG 111
Query: 202 AGLP--VSMFDAIVSADAFENL----------KPAPDIFLSASKILNVPTSECIVIEDAL 249
+ A D S L+ P I+I D++
Sbjct: 112 IVEKDRIYCNHASFDNDYIHIDWPHSCKGTCSNQCGCCKPSVIHELSEPNQYIIMIGDSV 171
Query: 250 AGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDIL 295
V+AAK + + C A L E ++ L + +I
Sbjct: 172 TDVEAAKLSDL-CFAR-DYLLNECREQNLNHLPYQ-----DFYEIR 210
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Score = 50.5 bits (120), Expect = 6e-07
Identities = 42/282 (14%), Positives = 89/282 (31%), Gaps = 28/282 (9%)
Query: 595 LFTSPLKFPGKLAIDI-LNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDD 653
+S LK+PG ++ D + ++ + D N V++L+ + + D
Sbjct: 49 FISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELE--------------IIGNTLDI 94
Query: 654 ATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQ 713
++FN P G++ + NH + + + + + +
Sbjct: 95 SSFN-PHGISTFIDDDNTVYLLVVNHP------GSSSTVEVFKFQEEEKSLLHLKTIRHK 147
Query: 714 LLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFA 773
LL S D+ E Y + + + N + F
Sbjct: 148 LLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFD 206
Query: 774 QPSGISLSPDFMEIYVADSESSSIRALNLK--TGGSRLLAGGDPIFPDNLFKFGDRDGMG 831
+GI++SPD +Y+A+ + I + L DN+ +
Sbjct: 207 FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDL- 265
Query: 832 SEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTL 873
+ HP G+ S +I+ + +V+ +
Sbjct: 266 --WVGCHPNGMRIFFYDAENPPGSEVLRIQDILSEEPKVTVV 305
|
| >d1x42a1 c.108.1.1 (A:1-230) Hypothetical protein PH0459 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: HAD-related domain: Hypothetical protein PH0459 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 48.7 bits (114), Expect = 1e-06
Identities = 36/230 (15%), Positives = 79/230 (34%), Gaps = 25/230 (10%)
Query: 81 AVLFDMDGVLCNSE---EPSRRAAVDVFAEMGV--EVTVEDFLPFMGTGEANFLGGV--- 132
AV FD G L + E + + +V + + + ++++ +N+ G
Sbjct: 4 AVFFDFVGTLLSVEGEAKTHLKIMEEVLGDYPLNPKTLLDEYEKLTREAFSNYAGKPYRP 63
Query: 133 ------ASVKGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAV 186
++ + + F+EI+L + + +P +E++ K K +
Sbjct: 64 IRDIEEEVMRKLAEKYGFKYPENFWEIHLRMHQRYGE--LYPEVVEVLKSLKGKYHVGMI 121
Query: 187 ASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIE 246
+ A +FD+I +++ KP P IF A K V E + +
Sbjct: 122 TD--SDTEYLMAHLDALGIKDLFDSITTSEEAGFFKPHPRIFELALKKAGVKGEEAVYVG 179
Query: 247 DAL-AGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDIL 295
D +K M I + + + ++ L +++
Sbjct: 180 DNPVKDCGGSKNLGMTSILLDRKGEKREFWDKCDFIVS------DLREVI 223
|
| >d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol-disulfide oxidoreductase ResA species: Bacillus subtilis [TaxId: 1423]
Score = 46.8 bits (109), Expect = 1e-06
Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 8/138 (5%)
Query: 430 VPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTV 489
P F L+ N ++ DLKGK V L+FW C C P + K +K
Sbjct: 5 APNF--VLEDTNGKRIELS-DLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGV-- 59
Query: 490 VGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLL 549
+ + A+ N + YG++ PVV D D + V+ PT ++ P GK++
Sbjct: 60 ---EIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVV 116
Query: 550 AQLAGEGHRKDLDDLVEA 567
+ G + D +
Sbjct: 117 KVVTGTMTESMIHDYMNL 134
|
| >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain species: Bradyrhizobium japonicum [TaxId: 375]
Score = 47.3 bits (111), Expect = 2e-06
Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 12/146 (8%)
Query: 430 VPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTV 489
+P+ + L D +GK ++++ W C+ C +P L+ L+ K F V
Sbjct: 36 LPDLAFEDADGKPKKLS---DFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEV 92
Query: 490 VGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGV----NSWPTFAVVGPN 545
V ++ D EK ++ A L ND ++++L PT +V P
Sbjct: 93 VAINIDTRDPEKPKTFLKEANLTR---LGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQ 149
Query: 546 GKLLAQLAG--EGHRKDLDDLVEAAL 569
G +A +AG E +D L+ AA
Sbjct: 150 GCEIATIAGPAEWASEDALKLIRAAT 175
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Score = 46.2 bits (108), Expect = 2e-06
Identities = 21/134 (15%), Positives = 37/134 (27%), Gaps = 6/134 (4%)
Query: 430 VPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTV 489
+P ++ L GK+V F C P L K+ +
Sbjct: 6 LPGIEKLRRGDGEVEVK---SLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFE 62
Query: 490 VGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPN-GKL 548
V + + + ++ L + V S PT V + G +
Sbjct: 63 VVFCTWDEEEDGFAGYFAKMPWLA--VPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDV 120
Query: 549 LAQLAGEGHRKDLD 562
+ A KD +
Sbjct: 121 VTTRARATLVKDPE 134
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Length = 319 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Score = 47.0 bits (110), Expect = 6e-06
Identities = 30/308 (9%), Positives = 73/308 (23%), Gaps = 55/308 (17%)
Query: 612 NNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLL 671
+LF+ D I + + I + S + P + + L
Sbjct: 50 QGQLFLLDVFEGNIFKINPETKEIKRPFVSHK-------------ANPAAIKIHKDGRLF 96
Query: 672 YVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVY 731
+ + I + D D+ + +
Sbjct: 97 VCYLGDFKSTGGIFAATEN-----------GDNLQDIIEDLSTAYCIDDMVFDSKGGFYF 145
Query: 732 IAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVAD 791
G + + + + + +GI+LS D ++V +
Sbjct: 146 TDFRGYSTNPLGGVYY----------VSPDFRTVTPIIQNISVANGIALSTDEKVLWVTE 195
Query: 792 SESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIY 851
+ ++ + + L+ G P + F +G S + +Y
Sbjct: 196 TTANRLHRIALEDDGV----TIQPFGATIPYYFTGHEGPDS---------CCIDSDDNLY 242
Query: 852 VADSYNHKIKKLDPASNRVSTLAGIGKAGFKD--------GAALAAQLSEPAGIIEAQNG 903
VA ++ + + + G+ + I
Sbjct: 243 VAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGS 302
Query: 904 NLFIADTN 911
L+ +
Sbjct: 303 MLYTVNGF 310
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Length = 319 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Score = 39.3 bits (90), Expect = 0.002
Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 17/102 (16%)
Query: 841 GVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEA 900
G+ + GQ+++ D + I K++P + + + + PA I
Sbjct: 44 GLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP-------------FVSHKANPAAIKIH 90
Query: 901 QNGNLFIADTNN----NIIRYLDLNKEEPELQTLELKGVQPP 938
++G LF+ + I N + + +L
Sbjct: 91 KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 132
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 44.7 bits (104), Expect = 4e-05
Identities = 27/264 (10%), Positives = 58/264 (21%), Gaps = 29/264 (10%)
Query: 612 NNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLL 671
+ I + N + V D+ + + + S P
Sbjct: 7 GHEYMIVTNYPNNLHVVDVASDTVYK------------SCVMPDKFGPGTAMMAPDNRTA 54
Query: 672 YVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVY 731
YV + + ID A + + S + P ++VY
Sbjct: 55 YVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVG----------RSMYSFAISPDGKEVY 104
Query: 732 IAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVAD 791
+ ++ +H V + Q + + D +YVA
Sbjct: 105 ATVNPTQRLNDHYVVKPPRLEV-FSTADGLEAKPVRTFPMPRQVYLMRAADD-GSLYVAG 162
Query: 792 SESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGM---GSEVLLQHPLGVYCAKNG 848
+ + K + L + +
Sbjct: 163 PDIYKMDVKTGKY--TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDK 220
Query: 849 QIYVADSYNHKIKKLDPASNRVST 872
Q + +D + + T
Sbjct: 221 QDPATADLLYGYLSVDLKTGKTHT 244
|
| >d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]} Length = 187 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593 species: Thermus thermophilus [TaxId: 274]
Score = 43.0 bits (100), Expect = 5e-05
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 2/136 (1%)
Query: 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMP-FTVVGVHSAKFDNEKDLEAIRN 508
++ + F C + +L L ++Y+ F + + + E E +
Sbjct: 29 QFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAA 88
Query: 509 AVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568
+GI P + D + + P + L + KD V++
Sbjct: 89 FAEEHGIFFPYLLDETQEVAKAYRALRTPEVFLFDERRLLRYHGRVNDNPKD-PSKVQSH 147
Query: 569 LLFYGKKKLLDNTPLP 584
L + LL P
Sbjct: 148 DLEAAIEALLRGEEPP 163
|
| >d1j97a_ c.108.1.4 (A:) Phosphoserine phosphatase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Phosphoserine phosphatase domain: Phosphoserine phosphatase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 42.9 bits (99), Expect = 7e-05
Identities = 46/227 (20%), Positives = 76/227 (33%), Gaps = 32/227 (14%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKG 137
K +LFD D L N+E ++ E GVE V+ G+ NF
Sbjct: 3 KKKLILFDFDSTLVNNE-----TIDEIAREAGVEEEVKKITKEAMEGKLNFEQ------- 50
Query: 138 VKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSA------- 190
+ K ++K K GA E I + K++G VAV S
Sbjct: 51 -SLRKRVSLLKDLPIEKVEKAIKRI--TPTEGAEETIKELKNRGYVVAVVSGGFDIAVNK 107
Query: 191 --DRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDA 248
+++ +D A + +I +KI + + + + D
Sbjct: 108 IKEKLGLDYAFANRLIVKDGKLTGDVEGEVLKENAKGEILEKIAKIEGINLEDTVAVGDG 167
Query: 249 LAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDIL 295
+ K A ++ IA ++ LKE + I L +IL
Sbjct: 168 ANDISMFKKAGLK-IAFC---AKPILKEKADICIE----KRDLREIL 206
|
| >d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.1 bits (97), Expect = 9e-05
Identities = 17/151 (11%), Positives = 35/151 (23%), Gaps = 26/151 (17%)
Query: 450 DLKGKVVVLDFWTYCCINCMH-VLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKD------ 502
+L GK ++ F C + L L + D +D
Sbjct: 23 NLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLK 82
Query: 503 --------------LEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKL 548
++ ++ V+ F ++ P G+
Sbjct: 83 EYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQF 142
Query: 549 LAQLAGEGHRKDLDDLVEAALLFYGKKKLLD 579
+ L K D + + K +
Sbjct: 143 VDALGRNYDEKTGVDKIVEHV-----KSYVP 168
|
| >d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 111 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 40.7 bits (94), Expect = 9e-05
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 30/120 (25%)
Query: 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNA 509
GK+VVLDF+ C C + P L L ++ D V K
Sbjct: 22 KASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN------VVVLK------------- 62
Query: 510 VLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569
V D ++ E ++S PTF V NG + + AG + K L+D+++A +
Sbjct: 63 ---------VDVDECEDIAMEYNISSMPTF-VFLKNGVKVEEFAG-ANAKRLEDVIKANI 111
|
| >d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Trypanosoma cruzi [TaxId: 5693]
Score = 42.1 bits (98), Expect = 1e-04
Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 3/106 (2%)
Query: 431 PEFPAKLDWLNTAPLQFR-RDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFT 488
P+F N + KGK +VL F+ C + K++ D+
Sbjct: 10 PDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCE 69
Query: 489 VVGVHS-AKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGV 533
V+ +++ + R ++ P++ D + + GV
Sbjct: 70 VLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGV 115
|
| >d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c {Streptococcus mutans [TaxId: 1309]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: NagD-like domain: Putative phosphatase SMU.1415c species: Streptococcus mutans [TaxId: 1309]
Score = 42.7 bits (99), Expect = 1e-04
Identities = 32/236 (13%), Positives = 59/236 (25%), Gaps = 37/236 (15%)
Query: 81 AVLFDMDGVLCNSEEPSRRA--AVDVFAEMGVEV------------TVEDFLPFMGTGE- 125
L D+DG + ++ V E + V++ L +
Sbjct: 4 GYLIDLDGTIYKGKDRIPAGEDFVKRLQERQLPYILVTNNTTRTPEMVQEMLATSFNIKT 63
Query: 126 ------------ANFLGGVASVKGVKGFDSEAAKKRFFE--IYLDKYAKPNSGIG----F 167
+++ + K KK E D +G
Sbjct: 64 PLETIYTATLATIDYMNDMKRGKTAYVIGETGLKKAVAEAGYREDSENPAYVVVGLDTNL 123
Query: 168 PGALELINQCKSKGLKVAVASSADRIKVDANL--AAAGLPVSMFDAIVSADAFENLKPAP 225
+ + V + ++ D AG + + + KP
Sbjct: 124 TYEKLTLATLAIQKGAVFIGTNPDLNIPTERGLLPGAGAILFLLEKATRVKPIIIGKPEA 183
Query: 226 DIFLSASKILNVPTSECIVIEDALAG-VQAAKAAQMRCIAVTTTL-SEERLKEASP 279
I A L V E I++ D + A + + VTT E +
Sbjct: 184 VIMNKALDRLGVKRHEAIMVGDNYLTDITAGIKNDIATLLVTTGFTKPEEVPALPI 239
|
| >d1nnla_ c.108.1.4 (A:) Phosphoserine phosphatase {Human (Homo sapiens) [TaxId: 9606]} Length = 217 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Phosphoserine phosphatase domain: Phosphoserine phosphatase species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.2 bits (98), Expect = 1e-04
Identities = 34/236 (14%), Positives = 74/236 (31%), Gaps = 42/236 (17%)
Query: 76 WGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAE-MGVEVTVEDFLPFMGTGEANF----LG 130
+ AV FD+D + E +D A+ GVE V + G F
Sbjct: 7 FYSADAVCFDVDSTVIREE------GIDELAKICGVEDAVSEMTRRAMGGAVPFKAALTE 60
Query: 131 GVASVKGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSA 190
+A ++ + ++ + PG EL+++ + + ++V + S
Sbjct: 61 RLALIQPSREQVQRLIAEQPPHLT-------------PGIRELVSRLQERNVQVFLISGG 107
Query: 191 DRIKVDANLAAAGLPVSMFDAIV-----------SADAFENLKPAPDIFLSASKILNVPT 239
R V+ + +P + A + + +
Sbjct: 108 FRSIVEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPTAESGGKGKVIKLLKEKFHF 167
Query: 240 SECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDIL 295
+ I+I D ++A A I + +++K+ + I ++L
Sbjct: 168 KKIIMIGDGATDMEACPPADAF-IGFGGNVIRQQVKDNAKWYIT------DFVELL 216
|
| >d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 2e-04
Identities = 15/141 (10%), Positives = 39/141 (27%), Gaps = 21/141 (14%)
Query: 450 DLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKF-----DNEKDL 503
D G+ +++ F T+C C L + + + + D ++ +
Sbjct: 17 DYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAI 76
Query: 504 EAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWP---------------TFAVVGPNGKL 548
+ + + R V P ++GP+G+
Sbjct: 77 ANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEF 136
Query: 549 LAQLAGEGHRKDLDDLVEAAL 569
L + ++ + +
Sbjct: 137 LDYFGQNKRKGEIAASIATHM 157
|
| >d2c4na1 c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId: 562]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: NagD-like domain: NagD species: Escherichia coli [TaxId: 562]
Score = 42.0 bits (97), Expect = 2e-04
Identities = 38/239 (15%), Positives = 68/239 (28%), Gaps = 34/239 (14%)
Query: 78 KVSAVLFDMDGVLCNSEEPSRRA--AVDVFAEMGVEVTV--------------------- 114
+ V+ D+DGVL + A + + G+ + +
Sbjct: 2 TIKNVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAGV 61
Query: 115 ---EDFLPFMGTGEANFL----GGVASVKGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGF 167
+ A+FL G A V G E K F ++
Sbjct: 62 DVPDSVFYTSAMATADFLRRQEGKKAYVVGEGALIHELYKAGFTITDVNPDFVIVGETRS 121
Query: 168 PGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDI 227
+ ++ A G + + I F KP+P I
Sbjct: 122 YNWDMMHKAAYFVANGARFIATNPDTHGRGFYPACGALCAGIEKISGRKPFYVGKPSPWI 181
Query: 228 FLSASKILNVPTSECIVIEDALAG-VQAAKAAQMRCIAVTT---TLSEERLKEASPSLI 282
+A + + E +++ D L + A A + I V + +L + PS I
Sbjct: 182 IRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSSLDDIDSMPFRPSWI 240
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Length = 314 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Score = 42.0 bits (97), Expect = 3e-04
Identities = 37/339 (10%), Positives = 87/339 (25%), Gaps = 56/339 (16%)
Query: 592 DPRL--FTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQI-GSSGEEGLRD 648
+P T + D N +I V I++I +G++ +
Sbjct: 7 EPLFTKVTEDIPGAEGPVFDK-NGDFYIVAPEVE---VNGKPAGEILRIDLKTGKKTVIC 62
Query: 649 GSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGE 708
+ P G + N L+VAD L + +
Sbjct: 63 KPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLV-VQTDGTFEEIAKKDSEGRR------ 115
Query: 709 KGTSQLLNSPWDVCYKPINEKVYIAMAGQ-----HQIWEHSTVDGVTRAFSGDGYERNLN 763
+ D + A AG+ + + + +
Sbjct: 116 ------MQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDT 169
Query: 764 GSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFK 823
N + ++ VA++ + + + ++K G I ++
Sbjct: 170 AFQFPNGIAVRHMND---GRPYQLIVAETPTKKLWSYDIK--------GPAKIENKKVWG 218
Query: 824 FGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKD 883
G G+ ++ + VA+ + I+ P +
Sbjct: 219 HIPGTHEG------GADGMDFDEDNNLLVANWGSSHIEVFGPDGGQP------------- 259
Query: 884 GAALAAQLSEPAGIIEAQNGN-LFIADTNNNIIRYLDLN 921
+ +P+ + +F+ + NN + +
Sbjct: 260 KMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298
|
| >d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) species: Escherichia coli [TaxId: 562]
Score = 39.6 bits (91), Expect = 3e-04
Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 23/118 (19%)
Query: 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNA 509
+ KGK V+LD + C+ C + K + TV+ + ++ +
Sbjct: 19 EAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQ-------- 70
Query: 510 VLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEA 567
D+ L + L V PT G+ Q G D +
Sbjct: 71 --------------DVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFM-DAETFSAH 113
|
| >d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} Length = 119 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Salmonella typhimurium [TaxId: 90371]
Score = 39.2 bits (91), Expect = 4e-04
Identities = 13/94 (13%), Positives = 28/94 (29%), Gaps = 6/94 (6%)
Query: 446 QFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEA 505
+ + + V++L + L +++ + V A D E+ EA
Sbjct: 23 DWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQV-----AVADLEQS-EA 76
Query: 506 IRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTF 539
I + +V G++ W
Sbjct: 77 IGDRFNVRRFPATLVFTDGKLRGALSGIHPWAEL 110
|
| >d1yv9a1 c.108.1.14 (A:4-256) Putative hydrolase EF1188 {Enterococcus faecalis [TaxId: 1351]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: NagD-like domain: Putative hydrolase EF1188 species: Enterococcus faecalis [TaxId: 1351]
Score = 40.8 bits (94), Expect = 5e-04
Identities = 31/253 (12%), Positives = 62/253 (24%), Gaps = 44/253 (17%)
Query: 81 AVLFDMDGVLCNSEEP---------------------------SRRAAVDVFAEMGVEVT 113
L D+DG + +EP S A
Sbjct: 4 GYLIDLDGTIYLGKEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLANEFDIHV 63
Query: 114 VEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDKYAKPNSGI------GF 167
+ +++ K V E + +
Sbjct: 64 PASLVYTATLATIDYMKEANRGKKVFVIGEAGLIDLILEAGFEWDETNPDYVVVGLDTEL 123
Query: 168 PGALELINQCKSKGLKVAVASSADRI--KVDANLAAAGLPVSMFDAIVSADAFENLKPAP 225
++ + + + ++ D+ L AG V+ + KP
Sbjct: 124 SYEKVVLATLAIQKGALFIGTNPDKNIPTERGLLPGAGSVVTFVETATQTKPVYIGKPKA 183
Query: 226 DIFLSASKILNVPTSECIVIEDALAG-VQAAKAAQMRCIAVTT---TLSEERLKEASPSL 281
I A L V + I++ D +Q+ + + VT+ S P+
Sbjct: 184 IIMERAIAHLGVEKEQVIMVGDNYETDIQSGIQNGIDSLLVTSGFTPKSAVPTLPTPPTY 243
Query: 282 IRKEIGSVSLNDI 294
+ SL++
Sbjct: 244 VVD-----SLDEW 251
|
| >d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} Length = 105 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]
Score = 38.2 bits (88), Expect = 5e-04
Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 29/118 (24%)
Query: 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVL 511
K V++DFW C C + P LE + + D V AK +
Sbjct: 16 GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD------KVTVAKLN------------- 56
Query: 512 RYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569
D + + G+ S PT ++ G+ + QL G ++ L+ + L
Sbjct: 57 ---------VDENPETTSQFGIMSIPTL-ILFKGGEPVKQLIGYQPKEQLEAQLADVL 104
|
| >d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 103 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 38.3 bits (88), Expect = 6e-04
Identities = 25/115 (21%), Positives = 38/115 (33%), Gaps = 31/115 (26%)
Query: 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVL 511
+ ++V++DF+ C C + P E K Y M F
Sbjct: 17 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVF------------------------ 52
Query: 512 RYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVE 566
V D + + + S PTF V NG + L G + L L+E
Sbjct: 53 -----IKVDVDEVSEVTEKENITSMPTF-KVYKNGSSVDTLLG-ANDSALKQLIE 100
|
| >d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Crithidia fasciculata [TaxId: 5656]
Score = 39.1 bits (90), Expect = 8e-04
Identities = 29/151 (19%), Positives = 56/151 (37%), Gaps = 13/151 (8%)
Query: 430 VPEFPAKLDWLNTAPLQFR-RDLKGKVVVLDFWTYCCIN-CMHVLPDLEFLEKKYKDMPF 487
PEF N + KGK VVL F+ C + K++ ++
Sbjct: 9 APEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINT 68
Query: 488 TVVGVHS-AKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGV------NSWPTFA 540
V+ +++ + + R ++ P++ D + R GV ++
Sbjct: 69 EVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDEDSGVAYRGVF 128
Query: 541 VVGPNGKLLAQ----LAGEGHRKDLDDLVEA 567
++ PNGKL + + +++ LVEA
Sbjct: 129 IIDPNGKLRQIIINDMPIGRNVEEVIRLVEA 159
|
| >d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Bacillus subtilis [TaxId: 1423]
Score = 38.4 bits (88), Expect = 0.002
Identities = 29/145 (20%), Positives = 52/145 (35%), Gaps = 23/145 (15%)
Query: 449 RDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIR 507
LKG+V + DF T C C + + L+KK K V + + + ++
Sbjct: 27 ESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLK 86
Query: 508 NAVLRYGIS---HPVVNDGDMNLWRELGVNSW----------------PTFAVVGPNGKL 548
Y +S + + E + S+ +F +VGP+GK+
Sbjct: 87 KFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKV 146
Query: 549 LAQLAG---EGHRKDLDDLVEAALL 570
L G + + D+ A+ L
Sbjct: 147 LKDYNGVENTPYDDIISDVKSASTL 171
|
| >d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.9 bits (82), Expect = 0.004
Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 31/118 (26%)
Query: 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVL 511
K+VV+DF C C + P L +KY ++ F
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIF------------------------ 54
Query: 512 RYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569
V D ++ E V PTF G+ + + +G +++ L+ + +
Sbjct: 55 -----LEVDVDDCQDVASECEVKCMPTFQFF-KKGQKVGEFSG-ANKEKLEATINELV 105
|
| >d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Length = 132 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Escherichia coli [TaxId: 562]
Score = 36.6 bits (84), Expect = 0.004
Identities = 10/94 (10%), Positives = 24/94 (25%), Gaps = 6/94 (6%)
Query: 446 QFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEA 505
+ VV+L + L +++ D + V + + +
Sbjct: 29 DWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIA---DLEQSEAIGD 85
Query: 506 IRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTF 539
+ +V G G++ W
Sbjct: 86 RFG---VFRFPATLVFTGGNYRGVLNGIHPWAEL 116
|
| >d2fpwa1 c.108.1.19 (A:3-163) Histidine biosynthesis bifunctional protein HisB, phosphatase domain {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Histidinol phosphatase-like domain: Histidine biosynthesis bifunctional protein HisB, phosphatase domain species: Escherichia coli [TaxId: 562]
Score = 37.2 bits (85), Expect = 0.004
Identities = 9/60 (15%), Positives = 19/60 (31%)
Query: 208 MFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTT 267
+ + AD + KP + + + VI D +Q A+ + +
Sbjct: 90 LICPHLPADECDCRKPKVKLVERYLAEQAMDRANSYVIGDRATDIQLAENMGINGLRYDR 149
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 37.9 bits (86), Expect = 0.004
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 774 QPSGISLSPDFMEIYVADSESSSIRALNLKTG 805
P+GI+++PD ++YVA S +++ ++ T
Sbjct: 245 DPAGIAVTPDGKKVYVALSFCNTVSVIDTATN 276
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1089 | |||
| d1te2a_ | 218 | Phosphatase YniC {Escherichia coli [TaxId: 562]} | 99.96 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.95 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.94 | |
| d1swva_ | 257 | Phosphonoacetaldehyde hydrolase {Bacillus cereus [ | 99.93 | |
| d2hsza1 | 224 | Phosphoglycolate phosphatase Gph {Haemophilus somn | 99.93 | |
| d2hdoa1 | 207 | Phosphoglycolate phosphatase {Lactobacillus planta | 99.93 | |
| d2ah5a1 | 210 | predicted phosphatase SP0104 {Streptococcus pneumo | 99.93 | |
| d2b5xa1 | 143 | thiol:disulfide oxidoreductase YkuV {Bacillus subt | 99.92 | |
| d2go7a1 | 204 | Hypothetical protein SP2064 {Streptococcus pneumon | 99.92 | |
| d2hcfa1 | 228 | Hypothetical protein CT1708 {Chlorobium tepidum [T | 99.92 | |
| d1o08a_ | 221 | beta-Phosphoglucomutase {Lactococcus lactis [TaxId | 99.91 | |
| d2fdra1 | 222 | Hypothetical protein Atu0790 {Agrobacterium tumefa | 99.91 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.9 | |
| d2cvba1 | 187 | Probable thiol-disulfide isomerase/thioredoxin TTH | 99.9 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.9 | |
| d2fi1a1 | 187 | Putative hydrolase SP0805 {Streptococcus pneumonia | 99.9 | |
| d1st9a_ | 137 | Thiol-disulfide oxidoreductase ResA {Bacillus subt | 99.9 | |
| d1lu4a_ | 134 | Soluble secreted antigen MPT53 {Mycobacterium tube | 99.88 | |
| d2gfha1 | 247 | N-acylneuraminate-9-phosphatase NANP {Mouse (Mus m | 99.88 | |
| d1x42a1 | 230 | Hypothetical protein PH0459 {Archaeon Pyrococcus h | 99.88 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 99.88 | |
| d1zzoa1 | 134 | Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI | 99.87 | |
| d2fy6a1 | 143 | Peptide methionine sulfoxide reductase MsrA/MsrB, | 99.87 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.86 | |
| d1knga_ | 144 | Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr | 99.86 | |
| d1zrna_ | 220 | L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., s | 99.85 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 99.85 | |
| d1z5ye1 | 136 | Thioredoxin-like protein CcmG (CycY, DsbE) {Escher | 99.85 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.85 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 99.85 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 99.84 | |
| d1qq5a_ | 245 | L-2-Haloacid dehalogenase, HAD {Xanthobacter autot | 99.84 | |
| d1zs9a1 | 253 | E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]} | 99.83 | |
| d1jfua_ | 176 | Membrane-anchored thioredoxin-like protein TlpA, s | 99.83 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.81 | |
| d1we0a1 | 166 | Alkyl hydroperoxide reductase AhpC {Amphibacillus | 99.81 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.81 | |
| d2cx4a1 | 160 | Bacterioferritin comigratory protein {Archaeon Aer | 99.8 | |
| d1e2ya_ | 167 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 99.8 | |
| d1o73a_ | 144 | Tryparedoxin I {Trypanosoma brucei brucei [TaxId: | 99.8 | |
| d2bmxa1 | 169 | Alkyl hydroperoxide reductase AhpC {Mycobacterium | 99.8 | |
| d1xvwa1 | 153 | Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri | 99.8 | |
| d1uula_ | 194 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 99.79 | |
| d1i5ga_ | 144 | Tryparedoxin II {Crithidia fasciculata [TaxId: 565 | 99.79 | |
| d2a4va1 | 156 | Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c | 99.77 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.77 | |
| d1zd3a1 | 225 | Epoxide hydrolase, N-terminal domain {Human (Homo | 99.76 | |
| d1cr6a1 | 222 | Epoxide hydrolase, N-terminal domain {Mouse (Mus m | 99.76 | |
| d1zofa1 | 170 | Thioredoxin reductase TsaA {Helicobacter pylori [T | 99.75 | |
| d1zyea1 | 158 | Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [ | 99.75 | |
| d1u7pa_ | 164 | Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mu | 99.74 | |
| d1o8xa_ | 144 | Tryparedoxin I {Crithidia fasciculata [TaxId: 5656 | 99.73 | |
| d1n8ja_ | 186 | Alkyl hydroperoxide reductase AhpC {Salmonella typ | 99.73 | |
| d2g80a1 | 225 | Protein UTR4 {Baker's yeast (Saccharomyces cerevis | 99.72 | |
| d1qmva_ | 197 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 99.72 | |
| d2gmwa1 | 182 | D,D-heptose 1,7-bisphosphate phosphatase GmhB {Esc | 99.71 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 99.71 | |
| d1qxha_ | 164 | Thiol peroxidase Tpx {Escherichia coli [TaxId: 562 | 99.69 | |
| d2zcta1 | 237 | Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | 99.69 | |
| d2b0ca1 | 197 | Putative phosphatase YihX {Escherichia coli [TaxId | 99.68 | |
| d2f8aa1 | 184 | Glutathione peroxidase {Human (Homo sapiens) [TaxI | 99.67 | |
| d1prxa_ | 220 | 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: | 99.66 | |
| d2fpwa1 | 161 | Histidine biosynthesis bifunctional protein HisB, | 99.65 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.65 | |
| d2o2xa1 | 209 | Hypothetical protein Mll2559 {Mesorhizobium loti [ | 99.65 | |
| d2c4na1 | 250 | NagD {Escherichia coli [TaxId: 562]} | 99.65 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.65 | |
| d1psqa_ | 163 | Probable thiol peroxidase PsaD {Streptococcus pneu | 99.63 | |
| d1xzoa1 | 172 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.63 | |
| d1xcca_ | 219 | 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax | 99.63 | |
| d2h01a1 | 170 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 99.62 | |
| d1xvqa_ | 166 | Thiol peroxidase Tpx {Mycobacterium tuberculosis [ | 99.62 | |
| d1wvia_ | 253 | Putative phosphatase SMU.1415c {Streptococcus muta | 99.61 | |
| d1nnla_ | 217 | Phosphoserine phosphatase {Human (Homo sapiens) [T | 99.61 | |
| d1q98a_ | 164 | Thiol peroxidase Tpx {Haemophilus influenzae [TaxI | 99.6 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.58 | |
| d1vjra_ | 261 | Hypothetical protein TM1742 {Thermotoga maritima [ | 99.57 | |
| d2feaa1 | 226 | 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate | 99.57 | |
| d1yv9a1 | 253 | Putative hydrolase EF1188 {Enterococcus faecalis [ | 99.54 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 99.53 | |
| d1wp0a1 | 160 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.51 | |
| d1j97a_ | 210 | Phosphoserine phosphatase {Archaeon Methanococcus | 99.47 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.47 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.47 | |
| d1xwaa_ | 111 | Thioredoxin {Fruit fly (Drosophila melanogaster) [ | 99.44 | |
| d1nw2a_ | 105 | Thioredoxin {Alicyclobacillus acidocaldarius, form | 99.44 | |
| d1dbya_ | 107 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.43 | |
| d2trxa_ | 108 | Thioredoxin {Escherichia coli [TaxId: 562]} | 99.43 | |
| d1thxa_ | 108 | Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | 99.42 | |
| d1qyia_ | 380 | Hypothetical protein MW1667 (SA1546) {Staphylococc | 99.42 | |
| d1fb6a_ | 104 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.41 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.39 | |
| d1xfla_ | 114 | Thioredoxin {Thale cress (Arabidopsis thaliana) [T | 99.37 | |
| d1r26a_ | 113 | Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | 99.37 | |
| d1gh2a_ | 107 | Thioredoxin-like protein, N-terminal domain {Human | 99.36 | |
| d1ep7a_ | 112 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.36 | |
| d2hfda1 | 132 | Hydrogenase-1 operon protein HyaE {Escherichia col | 99.36 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.36 | |
| d2ifqa1 | 105 | Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | 99.35 | |
| d2b7ka1 | 169 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.34 | |
| d1ti3a_ | 113 | Thioredoxin {European aspen (Populus tremula), thi | 99.34 | |
| d2es7a1 | 119 | Hydrogenase-1 operon protein HyaE {Salmonella typh | 99.31 | |
| d1a8la2 | 107 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 99.3 | |
| d2fwha1 | 117 | Thiol:disulfide interchange protein DsbD, C-termin | 99.29 | |
| d1f9ma_ | 112 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.27 | |
| d1ltqa1 | 149 | Polynucleotide kinase, phosphatase domain {Bacteri | 99.26 | |
| d1fo5a_ | 85 | MJ0307, thioredoxin/glutaredoxin-like protein {Arc | 99.26 | |
| d1syra_ | 103 | Thioredoxin {Malarial parasite (Plasmodium falcipa | 99.25 | |
| d1qgva_ | 137 | spliceosomal protein U5-15Kd {Human (Homo sapiens) | 99.24 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.2 | |
| d1woua_ | 119 | Putative 42-9-9 protein (thioredoxin containing pr | 99.17 | |
| d1z6na1 | 166 | Hypothetical protein PA1234 {Pseudomonas aeruginos | 99.16 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.16 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.16 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.15 | |
| d1zmaa1 | 115 | Bacterocin transport accessory protein Bta {Strept | 99.14 | |
| d1nhoa_ | 85 | MTH807, thioredoxin/glutaredoxin-like protein {Arc | 99.14 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.12 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.12 | |
| d1hd2a_ | 161 | Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606 | 99.12 | |
| d2b5ea4 | 119 | Protein disulfide isomerase, PDI {Baker's yeast (S | 99.12 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.11 | |
| d1rkua_ | 206 | Homoserine kinase ThrH {Pseudomonas aeruginosa [Ta | 99.11 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.06 | |
| d1tp9a1 | 162 | Plant peroxiredoxin {Western balsam poplar(Populus | 99.03 | |
| d1hyua4 | 96 | Alkyl hydroperoxide reductase subunit F (AhpF), N- | 99.01 | |
| d1meka_ | 120 | Protein disulfide isomerase, PDI {Human (Homo sapi | 99.01 | |
| d1wr8a_ | 230 | Phosphoglycolate phosphatase, PGPase {Pyrococcus h | 98.96 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 98.96 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.93 | |
| d1yj5a1 | 195 | 5' polynucleotide kinase-3' phosphatase, middle do | 98.93 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.92 | |
| d1l6ra_ | 225 | Phosphoglycolate phosphatase, PGPase {Archaeon The | 98.91 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.88 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.88 | |
| d2b5ea1 | 140 | Protein disulfide isomerase, PDI {Baker's yeast (S | 98.87 | |
| d1sena_ | 135 | Thioredoxin-like protein p19, TLP19 {Human (Homo s | 98.8 | |
| d1nm3a2 | 163 | N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus | 98.8 | |
| d1a8ya1 | 124 | Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax | 98.8 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.79 | |
| d2djja1 | 116 | Protein disulfide isomerase, PDI {Fungi (Humicola | 98.78 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.77 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 98.75 | |
| d1rkqa_ | 271 | Hypothetical protein YidA {Escherichia coli [TaxId | 98.74 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.74 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 98.72 | |
| d2c0ga2 | 122 | Windbeutel, N-terminal domain {Fruit fly (Drosophi | 98.71 | |
| d1nrwa_ | 285 | Hypothetical protein YwpJ {Bacillus subtilis [TaxI | 98.69 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.68 | |
| d2dlxa1 | 147 | UBX domain-containing protein 7 {Human (Homo sapie | 98.63 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.6 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.59 | |
| d2b82a1 | 209 | Class B acid phosphatase, AphA {Escherichia coli [ | 98.58 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 98.58 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 98.57 | |
| d1rlma_ | 269 | Sugar phosphatase SupH (YbiV) {Escherichia coli [T | 98.55 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.53 | |
| d1k1ea_ | 177 | Probable phosphatase YrbI {Haemophilus influenzae, | 98.51 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.51 | |
| d1nf2a_ | 267 | Hypothetical protein TM0651 {Thermotoga maritima [ | 98.41 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 98.4 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 98.39 | |
| d2rbka1 | 260 | Sugar-phosphate phosphatase BT4131 {Bacteroides th | 98.38 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 98.37 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 98.32 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 98.3 | |
| d2trcp_ | 217 | Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | 98.3 | |
| d2b30a1 | 283 | PFL1270w orthologue {Plasmodium vivax [TaxId: 5855 | 98.28 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 98.28 | |
| d1wjka_ | 100 | Thioredoxin-like structure containing protein C330 | 98.26 | |
| d2bdua1 | 291 | Cytosolic 5'-nucleotidase III {Mouse (Mus musculus | 98.24 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 98.24 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.2 | |
| d1xiya1 | 179 | 1-Cys peroxiredoxin {Malaria parasite (Plasmodium | 98.18 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 98.16 | |
| d1xvia_ | 232 | Putative mannosyl-3-phosphoglycerate phosphatase M | 98.14 | |
| d1wzca1 | 243 | Putative mannosyl-3-phosphoglycerate phosphatase M | 98.11 | |
| d1g7ea_ | 122 | Endoplasmic reticulum protein ERP29, N-terminal do | 98.09 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.08 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 98.08 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.04 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.04 | |
| d1s2oa1 | 244 | Sucrose-phosphatase Slr0953 {Synechocystis sp. pcc | 97.85 | |
| d2b8ea1 | 135 | Cation-transporting ATPase {Archaeon Archaeoglobus | 97.85 | |
| d1eeja1 | 156 | Disulfide bond isomerase, DsbC, C-terminal domain | 97.79 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 97.73 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.63 | |
| d1v58a1 | 169 | Thiol:disulfide interchange protein DsbG, C-termin | 97.59 | |
| d2bdea1 | 458 | Cytosolic IMP-GMP specific 5'-nucleotidase {Legion | 97.57 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 97.55 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 97.51 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 97.4 | |
| d1q92a_ | 195 | 5'(3')-deoxyribonucleotidase (dNT-2) {Human (Homo | 97.39 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 97.38 | |
| d1beda_ | 181 | Disulfide-bond formation facilitator (DsbA) {Vibri | 97.34 | |
| d1t3ba1 | 150 | Disulfide bond isomerase, DsbC, C-terminal domain | 97.32 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 97.23 | |
| d1wpga2 | 168 | Calcium ATPase, catalytic domain P {Rabbit (Orycto | 97.22 | |
| d1u02a_ | 229 | Trehalose-6-phosphate phosphatase related protein | 97.21 | |
| d2amya1 | 243 | Phosphomannomutase 2 {Human (Homo sapiens) [TaxId: | 97.13 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 97.11 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 97.02 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 96.86 | |
| d2fuea1 | 244 | Phosphomannomutase 1 {Human (Homo sapiens) [TaxId: | 96.79 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 96.78 | |
| d1z6ma1 | 172 | Hypothetical protein EF0770 {Enterococcus faecalis | 96.74 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 96.66 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 96.61 | |
| d1xpja_ | 124 | Hypothetical protein VC0232 {Vibrio cholerae [TaxI | 96.52 | |
| d1fvka_ | 188 | Disulfide-bond formation facilitator (DsbA) {Esche | 96.46 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 96.46 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.24 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 96.17 | |
| d2obba1 | 122 | Hypothetical protein BT0820 {Bacteroides thetaiota | 96.08 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 96.05 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 95.79 | |
| d1y8aa1 | 308 | Hypothetical protein AF1437 {Archaeon Archaeoglobu | 95.48 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 95.27 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 95.24 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 95.03 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 94.88 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 94.86 | |
| d1a8la1 | 119 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 94.4 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 93.88 | |
| d1iloa_ | 77 | MTH985, a thioredoxin {Archaeon Methanobacterium t | 93.37 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 93.11 | |
| d1un2a_ | 195 | Disulfide-bond formation facilitator (DsbA) {Esche | 92.98 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 91.68 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 91.56 | |
| d1ta0a_ | 181 | Carboxy-terminal domain RNA polymerase II polypept | 90.7 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 90.26 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 89.86 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 89.71 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 89.58 | |
| d2djka1 | 133 | Protein disulfide isomerase, PDI {Fungi (Humicola | 88.43 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 88.34 | |
| d1ktea_ | 105 | Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr | 87.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 87.7 | |
| d1r7ha_ | 74 | Glutaredoxin-like NRDH-redoxin {Corynebacterium am | 85.92 | |
| d1egoa_ | 85 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 84.38 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 82.85 | |
| d1ttza_ | 75 | Hypothetical protein XCC2852 {Xanthomonas campestr | 81.45 | |
| d2axoa1 | 225 | Hypothetical protein Atu2684 {Agrobacterium tumefa | 81.21 | |
| d2b5ea3 | 125 | Protein disulfide isomerase, PDI {Baker's yeast (S | 80.31 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 80.12 |
| >d1te2a_ c.108.1.6 (A:) Phosphatase YniC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: beta-Phosphoglucomutase-like domain: Phosphatase YniC species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=3.4e-28 Score=256.26 Aligned_cols=216 Identities=26% Similarity=0.401 Sum_probs=186.5
Q ss_pred CCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHH-hHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 001380 77 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVE-DFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYL 155 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (1089)
++|++||||+||||+|+.+.+..++.++++++|++++.+ ++..+.+..........................++.+.+.
T Consensus 1 ~~i~a~iFD~DGTL~dt~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (218)
T d1te2a_ 1 RQILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRRNELPDTLGLRIDMVVDLWYARQPWNGPSRQEVVERVIARAI 80 (218)
T ss_dssp CCCCEEEECCBTTTBCCHHHHHHHHHHHHHHTTCCGGGGGGSCCCTTCCHHHHHHHHHHHSCCSSSCHHHHHHHHHHHHH
T ss_pred CcceEEEECCCCcccCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCCccchhhhhhhcccccchhHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999987654 5566677777766666666555555566666666666666
Q ss_pred HHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHc
Q 001380 156 DKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKIL 235 (1089)
Q Consensus 156 ~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~l 235 (1089)
+.+.... .++||+.++|+.|+++|++++|+||+.+..++..++.+|+. .+|+.++++++++..||+|++|+.+++++
T Consensus 81 ~~~~~~~--~~~pg~~~~l~~L~~~g~~~~i~T~~~~~~~~~~l~~~~l~-~~F~~i~~~~~~~~~Kp~~~~~~~~~~~l 157 (218)
T d1te2a_ 81 SLVEETR--PLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLR-DSFDALASAEKLPYSKPHPQVYLDCAAKL 157 (218)
T ss_dssp HHHHHHC--CBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCG-GGCSEEEECTTSSCCTTSTHHHHHHHHHH
T ss_pred Hhhhccc--cccchHHHHHHHhhhcccccccccccccccccccccccccc-ccccccccccccccchhhHHHHHHHHHHc
Confidence 5554433 67999999999999999999999999999999999999996 99999999999999999999999999999
Q ss_pred CCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHH
Q 001380 236 NVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDIL 295 (1089)
Q Consensus 236 gv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll 295 (1089)
|++|++|+||||+.+|+.+|+++||.+|+|..+....+.....|+++++++.||++.+||
T Consensus 158 ~~~~~~~l~igD~~~di~aA~~~G~~~i~v~~~~~~~~~~~~~a~~~i~~l~el~~~~l~ 217 (218)
T d1te2a_ 158 GVDPLTCVALEDSVNGMIASKAARMRSIVVPAPEAQNDPRFVLANVKLSSLTELTAKDLL 217 (218)
T ss_dssp TSCGGGEEEEESSHHHHHHHHHTTCEEEECCCTTTTTCGGGGGSSEECSCGGGCCHHHHH
T ss_pred CCCchhcEEEeeCHHHHHHHHHcCCEEEEECCCCCccchhhcCCCEEECChhhCCHhhcC
Confidence 999999999999999999999999999999887654555557899999999999888886
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.95 E-value=2.6e-26 Score=251.52 Aligned_cols=253 Identities=18% Similarity=0.347 Sum_probs=206.0
Q ss_pred CCCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCC-CEEEEEE
Q 001380 597 TSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKK-NLLYVAD 675 (1089)
Q Consensus 597 ~~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g-~~lyVaD 675 (1089)
.+.|.+|.+||+|+ +|+|||+|.++|||.+++++|+.++.++..+.. ......|.+++++.+. +.+++.+
T Consensus 19 ~g~f~~P~gvavd~-dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~--------~~~~~~p~~~~~~~~~~~~~~~~~ 89 (279)
T d1q7fa_ 19 EGQFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKEGRFKFQFGECGKR--------DSQLLYPNRVAVVRNSGDIIVTER 89 (279)
T ss_dssp TTCBSCEEEEEECT-TCCEEEEEGGGTEEEEECTTSCEEEEECCBSSS--------TTCBSSEEEEEEETTTTEEEEEEC
T ss_pred CCeECCccEEEEcC-CCCEEEEECCCCEEEEEeCCCCEEEEecccCCC--------cccccccccccccccccccceecc
Confidence 46799999999997 889999999999999999999999988665322 2346689999987654 5455567
Q ss_pred CCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeC
Q 001380 676 TENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSG 755 (1089)
Q Consensus 676 ~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g 755 (1089)
..+++|.+++..+..+..+... .+..|++++++++| .+|+++..+++++++++.+..+..+..
T Consensus 90 ~~~~~i~~~~~~g~~~~~~~~~----------------~~~~p~~~avd~~G-~i~v~~~~~~~~~~~~~~g~~~~~~g~ 152 (279)
T d1q7fa_ 90 SPTHQIQIYNQYGQFVRKFGAT----------------ILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQNGNVLHKFGC 152 (279)
T ss_dssp GGGCEEEEECTTSCEEEEECTT----------------TCSCEEEEEECTTS-CEEEEETTTTEEEEECTTSCEEEEEEC
T ss_pred CCccccccccccccceeecCCC----------------cccccceeccccCC-cEEEEeeccceeeEeccCCceeecccc
Confidence 7788999999887777776421 25689999999987 899999999999999998877777753
Q ss_pred CCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCcccccc
Q 001380 756 DGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVL 835 (1089)
Q Consensus 756 ~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~ 835 (1089)
...+..|.+++++++| ++|++|..+++|++++.++.....+ | ....
T Consensus 153 -------------~~~~~~~~~i~~d~~g-~i~v~d~~~~~V~~~d~~G~~~~~~--------------g------~~g~ 198 (279)
T d1q7fa_ 153 -------------SKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEGQYLRQI--------------G------GEGI 198 (279)
T ss_dssp -------------TTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTCCEEEEE--------------S------CTTT
T ss_pred -------------cccccccceeeeccce-eEEeeeccccceeeeecCCceeeee--------------c------cccc
Confidence 2456789999999998 9999999999999999886444333 2 1224
Q ss_pred ccCceEEEEccCCcEEEEeCCC-CEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCE
Q 001380 836 LQHPLGVYCAKNGQIYVADSYN-HKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNI 914 (1089)
Q Consensus 836 l~~P~gva~~~~G~lyVaD~~n-~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~ 914 (1089)
+.+|.||++|++|+|||||.++ ++|.++++++..+.++.... ...+|.+||++++|+|||++. ||+
T Consensus 199 ~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~------------~~~~p~~vav~~dG~l~V~~~-n~~ 265 (279)
T d1q7fa_ 199 TNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKV------------KHAQCFDVALMDDGSVVLASK-DYR 265 (279)
T ss_dssp SCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESS------------CCSCEEEEEEETTTEEEEEET-TTE
T ss_pred ccCCcccccccCCeEEEEECCCCcEEEEECCCCCEEEEEeCCC------------CCCCEeEEEEeCCCcEEEEeC-CCe
Confidence 7899999999999999999865 57999999888788876421 346799999999999999995 799
Q ss_pred EEEEeCCC
Q 001380 915 IRYLDLNK 922 (1089)
Q Consensus 915 I~~~~~~~ 922 (1089)
|++|+...
T Consensus 266 v~~fr~~~ 273 (279)
T d1q7fa_ 266 LYIYRYVQ 273 (279)
T ss_dssp EEEEECSC
T ss_pred EEEEEeee
Confidence 99998754
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.94 E-value=7.3e-26 Score=245.20 Aligned_cols=241 Identities=19% Similarity=0.309 Sum_probs=187.6
Q ss_pred CCCceEEEeecCCeEEEEeCCC-CEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCC
Q 001380 601 KFPGKLAIDILNNRLFISDSNH-NRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENH 679 (1089)
Q Consensus 601 ~~P~~vavd~~~g~L~vsd~~~-~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~ 679 (1089)
..|.+||+|+ +|++||++..+ ++|.+++.++.....+... .+..|.||+++++|+ |||+|..++
T Consensus 14 ~~P~~vavd~-dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~-------------~~~~p~gvav~~~g~-i~v~d~~~~ 78 (260)
T d1rwia_ 14 LSPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTTVLPFN-------------GLYQPQGLAVDGAGT-VYVTDFNNR 78 (260)
T ss_dssp CCEEEEEECT-TCCEEEEECSSSCEEEEEC----CEEECCCC-------------SCCSCCCEEECTTCC-EEEEETTTE
T ss_pred CCCCEEEEcC-CCCEEEEEcCCCCEEEEEcCCCceEEEeccC-------------CccCceEEEEcCCCC-EEEeeeeec
Confidence 5799999996 89999998765 6888888776655443322 256899999999998 999999998
Q ss_pred EEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCcc
Q 001380 680 ALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYE 759 (1089)
Q Consensus 680 ~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~ 759 (1089)
.|++++..++. ..+.. + .++.|++|+++++| .+|+++..++++.+++..+.....+..
T Consensus 79 ~i~~~~~~~~~-~~~~~-~---------------~~~~p~~iavd~~g-~i~v~d~~~~~~~~~~~~~~~~~~~~~---- 136 (260)
T d1rwia_ 79 VVTLAAGSNNQ-TVLPF-D---------------GLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQTVLPF---- 136 (260)
T ss_dssp EEEECTTCSCC-EECCC-C---------------SCCSEEEEEECTTC-CEEEEEGGGTEEEEECTTCSSCEECCC----
T ss_pred eeeeeeeccce-eeeee-e---------------eeeecccccccccc-eeEeeccccccccccccccceeeeeee----
Confidence 88766543322 22221 1 15689999999987 799999999999999887655444432
Q ss_pred ccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCc
Q 001380 760 RNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHP 839 (1089)
Q Consensus 760 ~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P 839 (1089)
..+..|.||+++++| ++|+++..+++|.+++.+++....+.. ..+..|
T Consensus 137 ----------~~~~~p~~i~~~~~g-~~~v~~~~~~~i~~~d~~~~~~~~~~~---------------------~~~~~p 184 (260)
T d1rwia_ 137 ----------TGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNNQVVLPF---------------------TDITAP 184 (260)
T ss_dssp ----------CSCCSCCEEEECTTC-CEEEEEGGGTEEEEECTTTCCEEECCC---------------------SSCCSE
T ss_pred ----------cccCCcceeeecCCC-CEeeeccccccccccccccceeeeeec---------------------cccCCC
Confidence 346689999999998 799999999999999988665543321 126789
Q ss_pred eEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEe
Q 001380 840 LGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLD 919 (1089)
Q Consensus 840 ~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~ 919 (1089)
.||++|++|+|||+|..+++|.++++++.....+... .+..|.+|++|++|+|||+|.++++|++|+
T Consensus 185 ~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~-------------~~~~P~~i~~d~~g~l~vad~~~~rI~~i~ 251 (260)
T d1rwia_ 185 WGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFT-------------GLNTPLAVAVDSDRTVYVADRGNDRVVKLT 251 (260)
T ss_dssp EEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCC-------------SCCCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred ccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccC-------------CCCCeEEEEEeCCCCEEEEECCCCEEEEEe
Confidence 9999999999999999999999999887655554321 578899999999999999999999999998
Q ss_pred CCCC
Q 001380 920 LNKE 923 (1089)
Q Consensus 920 ~~~~ 923 (1089)
.-++
T Consensus 252 ~~~~ 255 (260)
T d1rwia_ 252 SLEH 255 (260)
T ss_dssp CCGG
T ss_pred CCCC
Confidence 7664
|
| >d1swva_ c.108.1.3 (A:) Phosphonoacetaldehyde hydrolase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Phosphonoacetaldehyde hydrolase-like domain: Phosphonoacetaldehyde hydrolase species: Bacillus cereus [TaxId: 1396]
Probab=99.93 E-value=3.5e-26 Score=247.29 Aligned_cols=216 Identities=19% Similarity=0.251 Sum_probs=174.4
Q ss_pred CceEEEEecCCcccCCchH-HHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHh----------hcCCCC--CCHH
Q 001380 78 KVSAVLFDMDGVLCNSEEP-SRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVAS----------VKGVKG--FDSE 144 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~-~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~--~~~~ 144 (1089)
++|+|+||+||||+|+... ...++.++++++|+.++.+++...++.........+.. .++... ....
T Consensus 1 kIkaviFD~dGTL~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (257)
T d1swva_ 1 KIEAVIFAWAGTTVDYGCFAPLEVFMEIFHKRGVAITAEEARKPMGLLKIDHVRALTEMPRIASEWNRVFRQLPTEADIQ 80 (257)
T ss_dssp CCCEEEECSBTTTBSTTCCTTHHHHHHHHHTTTCCCCHHHHHTTTTSCHHHHHHHHHHSHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEcCCCCeEeCcchHHHHHHHHHHHHcCCCCCHHHHHHHhCCcHHHHHHHHhhhhhhhHHHHHHhcccCCHHHHH
Confidence 4799999999999998653 47789999999999999999988887765544333221 122111 1223
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCc-cEEEEcCCccCCCC
Q 001380 145 AAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMF-DAIVSADAFENLKP 223 (1089)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~f-d~i~~~~~~~~~KP 223 (1089)
.....+.+.+.+.+.... .++||+.++|+.|+++|++++|+||..+..++..++.+|+. .+| |.++++++....||
T Consensus 81 ~~~~~~~~~~~~~~~~~~--~~~~g~~~~L~~Lk~~g~~i~i~Tn~~~~~~~~~l~~~~l~-~~f~d~~~~~d~~~~~KP 157 (257)
T d1swva_ 81 EMYEEFEEILFAILPRYA--SPINGVKEVIASLRERGIKIGSTTGYTREMMDIVAKEAALQ-GYKPDFLVTPDDVPAGRP 157 (257)
T ss_dssp HHHHHHHHHHHHHGGGGC--CBCTTHHHHHHHHHHTTCEEEEBCSSCHHHHHHHHHHHHHT-TCCCSCCBCGGGSSCCTT
T ss_pred HHHHHHHHHHHHHhhccC--ccCCcHHHHHHHHHhcccceeecCCCchhhHHHHHHHHhhc-cccccccccccccccccc
Confidence 344555566666554433 78999999999999999999999999999999999999996 766 89999999999999
Q ss_pred CHHHHHHHHHHcCCC-CCcEEEEcCChhhHHHHHHcCCeEEEEcCCCC-----H-------------------HHHhhcC
Q 001380 224 APDIFLSASKILNVP-TSECIVIEDALAGVQAAKAAQMRCIAVTTTLS-----E-------------------ERLKEAS 278 (1089)
Q Consensus 224 ~~~~~~~~l~~lgv~-p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~-----~-------------------~~l~~~~ 278 (1089)
+|++|..+++++|+. +++|+||||+.+||.+|+++||.+|+|.+|.. . +.+..++
T Consensus 158 ~p~~~~~~~~~l~~~p~~~~v~VgDs~~Di~aA~~aG~~ti~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 237 (257)
T d1swva_ 158 YPWMCYKNAMELGVYPMNHMIKVGDTVSDMKEGRNAGMWTVGVILGSSELGLTEEEVENMDSVELREKIEVVRNRFVENG 237 (257)
T ss_dssp SSHHHHHHHHHHTCCSGGGEEEEESSHHHHHHHHHTTSEEEEECTTCTTTCCCHHHHHHSCHHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHhCCCCcceEEEEeCChhhHHHHHHCCCEEEEEccCCCCCCCCHHHHhhCCHHHHHHHHHHHHHHHHhCC
Confidence 999999999999995 59999999999999999999999999999852 1 2355678
Q ss_pred CcEEecCcccCCHHHHHhcc
Q 001380 279 PSLIRKEIGSVSLNDILTGG 298 (1089)
Q Consensus 279 ~d~vi~dl~el~i~~ll~~~ 298 (1089)
||++++++.|| ..+|...
T Consensus 238 ad~vi~~l~eL--~~ii~~~ 255 (257)
T d1swva_ 238 AHFTIETMQEL--ESVMEHI 255 (257)
T ss_dssp CSEEESSGGGH--HHHHHHH
T ss_pred CCEEECCHHHH--HHHHHHH
Confidence 99999999998 7776543
|
| >d2hsza1 c.108.1.6 (A:1-224) Phosphoglycolate phosphatase Gph {Haemophilus somnus [TaxId: 731]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: beta-Phosphoglucomutase-like domain: Phosphoglycolate phosphatase Gph species: Haemophilus somnus [TaxId: 731]
Probab=99.93 E-value=8.9e-26 Score=238.25 Aligned_cols=210 Identities=17% Similarity=0.282 Sum_probs=169.7
Q ss_pred CCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCC-CHHhHhhhcCCCHHHHHHHHHhhc---CCCCCCHHH---HHHH
Q 001380 77 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEV-TVEDFLPFMGTGEANFLGGVASVK---GVKGFDSEA---AKKR 149 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~ 149 (1089)
.++|+|+||+||||+|+.+.+..++.++++++|+.. ..+.+....+.............. ......... ....
T Consensus 2 ~~~k~iiFD~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (224)
T d2hsza1 2 TQFKLIGFDLDGTLVNSLPDLALSINSALKDVNLPQASENLVMTWIGNGADVLSQRAVDWACKQAEKELTEDEFKYFKRQ 81 (224)
T ss_dssp SSCSEEEECSBTTTEECHHHHHHHHHHHHHHTTCCCCCHHHHHHHCSSCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCcccCHHHHHHHHHHHHHHCCCCCCcHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence 468999999999999999999999999999999874 455666666666554333222111 111112221 1112
Q ss_pred HHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHH
Q 001380 150 FFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFL 229 (1089)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~ 229 (1089)
....+.+.... ...++||+.++|+.|+++|++++|+||..+..++..++++|+. .+|+.++++++.+..||+|++|.
T Consensus 82 ~~~~~~~~~~~--~~~l~~~~~~~L~~L~~~g~~~~i~tn~~~~~~~~~l~~~gl~-~~f~~~~~~~~~~~~kp~p~~~~ 158 (224)
T d2hsza1 82 FGFYYGENLCN--ISRLYPNVKETLEALKAQGYILAVVTNKPTKHVQPILTAFGID-HLFSEMLGGQSLPEIKPHPAPFY 158 (224)
T ss_dssp HHHHHHHHTTS--SCEECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCG-GGCSEEECTTTSSSCTTSSHHHH
T ss_pred HHHHHHHhhcc--ccchHHHHHHHHHHHhccCCcccccccccHHHHHHHHHhcCch-hhccccccccccccccccchhhH
Confidence 22222333333 3478999999999999999999999999999999999999997 99999999999999999999999
Q ss_pred HHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC-CHHHHhhcCCcEEecCcccC
Q 001380 230 SASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL-SEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 230 ~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~-~~~~l~~~~~d~vi~dl~el 289 (1089)
.+++++++++++|+||||+.+|+.+|+++|+.+|+|.+|. ....+.+.+|+++++++.||
T Consensus 159 ~~~~~~~~~~~~~~~igD~~~Di~~A~~aG~~~i~v~~g~~~~~~l~~~~~d~~v~~l~dL 219 (224)
T d2hsza1 159 YLCGKFGLYPKQILFVGDSQNDIFAAHSAGCAVVGLTYGYNYNIPIAQSKPDWIFDDFADI 219 (224)
T ss_dssp HHHHHHTCCGGGEEEEESSHHHHHHHHHHTCEEEEESSSCSTTCCGGGGCCSEEESSGGGG
T ss_pred HHHHHhhhhhhccchhcCcHHHHHHHHHcCCeEEEEeCCCCCcchhhhcCCCEEECCHHHH
Confidence 9999999999999999999999999999999999999987 56677788999999999998
|
| >d2hdoa1 c.108.1.6 (A:1-207) Phosphoglycolate phosphatase {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: beta-Phosphoglucomutase-like domain: Phosphoglycolate phosphatase species: Lactobacillus plantarum [TaxId: 1590]
Probab=99.93 E-value=4.1e-26 Score=238.12 Aligned_cols=203 Identities=18% Similarity=0.238 Sum_probs=169.5
Q ss_pred CCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 001380 77 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLD 156 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1089)
|++|+|+||+||||+|+.+.+..++.++++++|.+...+++....+......... .+......+.....+.+.+.+
T Consensus 1 M~~k~viFD~DGTL~ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 76 (207)
T d2hdoa1 1 MTYQALMFDIDGTLTNSQPAYTTVMREVLATYGKPFSPAQAQKTFPMAAEQAMTE----LGIAASEFDHFQAQYEDVMAS 76 (207)
T ss_dssp CCCSEEEECSBTTTEECHHHHHHHHHHHHHTTTCCCCHHHHHHHTTSCHHHHHHH----TTCCGGGHHHHHHHHHHHHTT
T ss_pred CCCcEEEEeCCCCcCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHhcchhhhhhhc----cccchhhHHHHHHHhhhhhcc
Confidence 4589999999999999999999999999999999999888888887765554433 233333444444555444443
Q ss_pred HhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcC
Q 001380 157 KYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILN 236 (1089)
Q Consensus 157 ~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lg 236 (1089)
.+.. ..++||+.++|+.|++ +++++|+||+....++..++++++. .+|+.++++++.+..||+|++|..+++++|
T Consensus 77 ~~~~---~~~~~g~~~~L~~l~~-~~~~~ivT~~~~~~~~~~l~~~~l~-~~f~~i~~~~~~~~~KP~p~~~~~~~~~~~ 151 (207)
T d2hdoa1 77 HYDQ---IELYPGITSLFEQLPS-ELRLGIVTSQRRNELESGMRSYPFM-MRMAVTISADDTPKRKPDPLPLLTALEKVN 151 (207)
T ss_dssp CGGG---CEECTTHHHHHHHSCT-TSEEEEECSSCHHHHHHHHTTSGGG-GGEEEEECGGGSSCCTTSSHHHHHHHHHTT
T ss_pred cccc---cccccchhhhhhhhcc-ccccccccccccccccccccccccc-ccccccccccccccchhhhhhhccccccee
Confidence 3322 3689999999999986 6999999999999999999999996 999999999999999999999999999999
Q ss_pred CCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccC
Q 001380 237 VPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 237 v~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el 289 (1089)
++|++|+||||+.+|+.+|+++||.+++|.+|....... ..+++++.++.||
T Consensus 152 ~~~~~~l~VgDs~~Di~~a~~aG~~~i~v~~g~~~~~~~-~~~~~~i~~l~dl 203 (207)
T d2hdoa1 152 VAPQNALFIGDSVSDEQTAQAANVDFGLAVWGMDPNADH-QKVAHRFQKPLDI 203 (207)
T ss_dssp CCGGGEEEEESSHHHHHHHHHHTCEEEEEGGGCCTTGGG-SCCSEEESSGGGG
T ss_pred eeccceeEecCCHHHHHHHHHcCCeEEEEecCCCChhHh-hhcCcEeCCHHHH
Confidence 999999999999999999999999999999987433322 3688999988777
|
| >d2ah5a1 c.108.1.6 (A:1-210) predicted phosphatase SP0104 {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: beta-Phosphoglucomutase-like domain: predicted phosphatase SP0104 species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.93 E-value=3.8e-25 Score=231.12 Aligned_cols=202 Identities=19% Similarity=0.258 Sum_probs=171.5
Q ss_pred CCceEEEEecCCcccCCchHHHHHHHHHHHHcCCC-CCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 001380 77 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVE-VTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYL 155 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (1089)
.++|+|+||+||||+|+...+..++.++++++|+. .+.+++..+.+............ ....+.....+.+.+.
T Consensus 2 ~~ik~VifD~DGTL~ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 76 (210)
T d2ah5a1 2 TSITAIFFDLDGTLVDSSIGIHNAFTYTFKELGVPSPDAKTIRGFMGPPLESSFATCLS-----KDQISEAVQIYRSYYK 76 (210)
T ss_dssp TTCCEEEECSBTTTEECHHHHHHHHHHHHHHHTCCCCCHHHHHHTSSSCHHHHHHTTSC-----GGGHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHhhhcchhhhcccccc-----chhhHHHHHHHHHHHH
Confidence 45899999999999999999999999999999987 45677777777776665443322 2234455555555555
Q ss_pred HHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHc
Q 001380 156 DKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKIL 235 (1089)
Q Consensus 156 ~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~l 235 (1089)
....... .+++|+.++|+.|+.+ ++++|+||+....++..++++|+. .+||.++++++. +||+|++|..+++++
T Consensus 77 ~~~~~~~--~~~~~~~~~l~~l~~~-~~~~i~t~~~~~~~~~~l~~~gl~-~~fd~v~~~~~~--~~~~p~~~~~~~~~~ 150 (210)
T d2ah5a1 77 AKGIYEA--QLFPQIIDLLEELSSS-YPLYITTTKDTSTAQDMAKNLEIH-HFFDGIYGSSPE--APHKADVIHQALQTH 150 (210)
T ss_dssp HTGGGSC--EECTTHHHHHHHHHTT-SCEEEEEEEEHHHHHHHHHHTTCG-GGCSEEEEECSS--CCSHHHHHHHHHHHT
T ss_pred hhhhhcc--cchhHHHHHHhhhhcc-cchhhcccccchhhhHHHHhhccc-cccccccccccc--ccccccccchhhhhh
Confidence 5544433 7899999999999987 599999999999999999999997 999999998875 588899999999999
Q ss_pred CCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC-CHHHHhhcCCcEEecCcccC
Q 001380 236 NVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL-SEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 236 gv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~-~~~~l~~~~~d~vi~dl~el 289 (1089)
|++|++++||||+.+|+.+|+++|+++++|.+|. ..+++...+|+++++++.||
T Consensus 151 ~~~~~~~v~VGDs~~Di~aa~~aGi~~i~v~~g~~~~~~l~~~~pd~vi~~l~el 205 (210)
T d2ah5a1 151 QLAPEQAIIIGDTKFDMLGARETGIQKLAITWGFGEQADLLNYQPDYIAHKPLEV 205 (210)
T ss_dssp TCCGGGEEEEESSHHHHHHHHHHTCEEEEESSSSSCHHHHHTTCCSEEESSTTHH
T ss_pred hcccccceeecCCHHHHHHHHHcCCeEEEEcCCCCCHHHHHhCCCCEEECCHHHH
Confidence 9999999999999999999999999999999987 77888888999999999887
|
| >d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: thiol:disulfide oxidoreductase YkuV species: Bacillus subtilis [TaxId: 1423]
Probab=99.92 E-value=2.7e-25 Score=216.92 Aligned_cols=142 Identities=25% Similarity=0.437 Sum_probs=132.3
Q ss_pred CCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHH
Q 001380 425 KTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLE 504 (1089)
Q Consensus 425 ~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~ 504 (1089)
.+|+++|+|++...|+||+.+++ +.++||++||+||++||++|++++|.|++++++|++ ++.+|+|+++.+..+.+.+
T Consensus 2 k~g~~aP~~~~~~~~~ng~~~~~-~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~-~~~~i~v~~~~~~~~~~~~ 79 (143)
T d2b5xa1 2 KLRQPMPELTGEKAWLNGEVTRE-QLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQD-QLNVVAVHMPRSEDDLDPG 79 (143)
T ss_dssp CTTCBCCCCCCCSEEESCCCCHH-HHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-TSEEEEEECCCSTTTSSHH
T ss_pred CCCCcCCCCcCCccCcCCeEecH-HHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhc-cccceeEEeeccccccchh
Confidence 57999999998888899998888 899999999999999999999999999999999987 4899999998777777888
Q ss_pred HHHHHHHHcCCccceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 505 AIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 505 ~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
.+++++++++++||++.|.+.++++.|++.++|++|+||++|++++++.|....+.+++.|+++
T Consensus 80 ~~~~~~~~~~~~~p~~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~l 143 (143)
T d2b5xa1 80 KIKETAAEHDITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRV 143 (143)
T ss_dssp HHHHHHHHTTCCSCEEECSSCHHHHHTCCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHH
T ss_pred hhhhHHHhhccCccccccCccchHHHcCCCcCCEEEEECCCCEEEEEEECCCCHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999888888887754
|
| >d2go7a1 c.108.1.6 (A:3-206) Hypothetical protein SP2064 {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: beta-Phosphoglucomutase-like domain: Hypothetical protein SP2064 species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.92 E-value=8e-25 Score=227.65 Aligned_cols=199 Identities=18% Similarity=0.232 Sum_probs=161.4
Q ss_pred eEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhc-CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHh
Q 001380 80 SAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFM-GTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDKY 158 (1089)
Q Consensus 80 k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (1089)
+|+|||+||||+|+...+..++.++++++|++...+++.... +.........+....+. . .+...++.+.+....
T Consensus 2 ~a~iFD~DGTL~ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~ 77 (204)
T d2go7a1 2 TAFIWDLDGTLLDSYEAILSGIEETFAQFSIPYDKEKVREFIFKYSVQDLLVRVAEDRNL---D-VEVLNQVRAQSLAEK 77 (204)
T ss_dssp CEEEECTBTTTEECHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHSCHHHHHHHHHHHHTC---C-HHHHHHHHHHHHTTC
T ss_pred EEEEEcCCCcCccCHHHHHHHHHHHHHHcCCCCCHHHHHHhhcccccccccccccchhhh---h-HHHHHHHHHHHHHhh
Confidence 689999999999999999999999999999998777665433 45555555555544332 2 233334444333332
Q ss_pred cCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCC
Q 001380 159 AKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVP 238 (1089)
Q Consensus 159 ~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~ 238 (1089)
.. ...++||+.++|+.|+++|++++|+||+.. ....+++++|+. .+|+.++++++....||++++|+.+++++|++
T Consensus 78 ~~--~~~~~pgv~~~L~~L~~~g~~~~v~Sn~~~-~~~~~l~~~gl~-~~f~~i~~s~~~~~~Kp~~~~~~~~~~~~~~~ 153 (204)
T d2go7a1 78 NA--QVVLMPGAREVLAWADESGIQQFIYTHKGN-NAFTILKDLGVE-SYFTEILTSQSGFVRKPSPEAATYLLDKYQLN 153 (204)
T ss_dssp GG--GCEECTTHHHHHHHHHHTTCEEEEECSSCT-HHHHHHHHHTCG-GGEEEEECGGGCCCCTTSSHHHHHHHHHHTCC
T ss_pred cc--cCcccchHHhhhhcccccccchhhhcccch-hhhhhhhhcccc-cccccccccccccccchhHHHHHHHHHHhCCC
Confidence 22 237899999999999999999999999765 456789999997 99999999999999999999999999999999
Q ss_pred CCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHH
Q 001380 239 TSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDIL 295 (1089)
Q Consensus 239 p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll 295 (1089)
|++|+||||+.+|+.+|+++||++|+|.++. ..+++.+.++.++ .+|+
T Consensus 154 p~~~l~VgD~~~Di~~A~~~G~~~i~v~~~~-------~~~~~~~~~~~dl--~~l~ 201 (204)
T d2go7a1 154 SDNTYYIGDRTLDVEFAQNSGIQSINFLEST-------YEGNHRIQALADI--SRIF 201 (204)
T ss_dssp GGGEEEEESSHHHHHHHHHHTCEEEESSCCS-------CTTEEECSSTTHH--HHHT
T ss_pred CceEEEEeCCHHHHHHHHHcCCeEEEEcCCC-------CCcCeecCCHHHH--HHHh
Confidence 9999999999999999999999999998863 3577888888777 5554
|
| >d2hcfa1 c.108.1.6 (A:2-229) Hypothetical protein CT1708 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: beta-Phosphoglucomutase-like domain: Hypothetical protein CT1708 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.92 E-value=6.7e-25 Score=232.52 Aligned_cols=215 Identities=23% Similarity=0.317 Sum_probs=165.0
Q ss_pred ceEEEEecCCcccCCchHHHHHHHHHHHHc-CCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHH
Q 001380 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEM-GVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDK 157 (1089)
Q Consensus 79 ~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (1089)
.|+|+||+||||+++...+..++.++++++ +........ .+.+..............+.......+......+.+...
T Consensus 2 ~klviFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
T d2hcfa1 2 RTLVLFDIDGTLLKVESMNRRVLADALIEVYGTEGSTGSH-DFSGKMDGAIIYEVLSNVGLERAEIADKFDKAKETYIAL 80 (228)
T ss_dssp CEEEEECCBTTTEEECTHHHHHHHHHHHHHHSCCCCC----CCTTCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCCcccCHHHHHHHHHHHHHHHcCCCccHHHH-HHhcCchHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999887774 554432222 234444444444444444433211122222333333222
Q ss_pred h---cCCCCCCCCccHHHHHHHHHhCC-CeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHH
Q 001380 158 Y---AKPNSGIGFPGALELINQCKSKG-LKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASK 233 (1089)
Q Consensus 158 ~---~~~~~~~~~pG~~~lL~~Lk~~G-i~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~ 233 (1089)
+ .......++||+.++|+.|+++| ++++|+||+....++..++.+|+. .+||.++++++....||+|.++...+.
T Consensus 81 ~~~~~~~~~~~~~~g~~~~L~~L~~~g~~~~~v~t~~~~~~~~~~l~~~gl~-~~fd~i~~~~~~~~~k~~p~~~~~~~~ 159 (228)
T d2hcfa1 81 FRERARREDITLLEGVRELLDALSSRSDVLLGLLTGNFEASGRHKLKLPGID-HYFPFGAFADDALDRNELPHIALERAR 159 (228)
T ss_dssp HHHHCCGGGEEECTTHHHHHHHHHTCTTEEEEEECSSCHHHHHHHHHTTTCS-TTCSCEECTTTCSSGGGHHHHHHHHHH
T ss_pred HHHHhhccCceecCchHHHHhhhhccccccccccCCCcchhhhhhhhhhccc-ccccccccccccccccchhHHHHHHhh
Confidence 2 12223468999999999999987 899999999999999999999997 999999999999999999998777766
Q ss_pred Hc---CCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC-CHHHHhhcCCcEEecCcccCCHHHHHhc
Q 001380 234 IL---NVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL-SEERLKEASPSLIRKEIGSVSLNDILTG 297 (1089)
Q Consensus 234 ~l---gv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~-~~~~l~~~~~d~vi~dl~el~i~~ll~~ 297 (1089)
.+ +++|++|+||||+.+|+.+|+++||++|+|.+|. ..+++.+.+|+++++++.|| .++|..
T Consensus 160 ~~~~~~~~p~~~l~VGD~~~Di~aA~~aG~~~i~v~~g~~~~~~l~~~~ad~vi~~~~el--~~~l~~ 225 (228)
T d2hcfa1 160 RMTGANYSPSQIVIIGDTEHDIRCARELDARSIAVATGNFTMEELARHKPGTLFKNFAET--DEVLAS 225 (228)
T ss_dssp HHHCCCCCGGGEEEEESSHHHHHHHHTTTCEEEEECCSSSCHHHHHTTCCSEEESCSCCH--HHHHHH
T ss_pred hhcccCCChhHheeecCChHHHHHHHHcCCEEEEEcCCCCCHHHHhhCCCCEEECCHHHH--HHHHHH
Confidence 65 8899999999999999999999999999999987 78888888999999999998 666643
|
| >d1o08a_ c.108.1.6 (A:) beta-Phosphoglucomutase {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: beta-Phosphoglucomutase-like domain: beta-Phosphoglucomutase species: Lactococcus lactis [TaxId: 1358]
Probab=99.91 E-value=1.8e-23 Score=220.11 Aligned_cols=211 Identities=27% Similarity=0.361 Sum_probs=171.7
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhH-hhhcCCCHHHHHHHHHhhcCCCCCCH---HHHHHHHHHH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDF-LPFMGTGEANFLGGVASVKGVKGFDS---EAAKKRFFEI 153 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 153 (1089)
|+|+|+||+||||+|+...+..++.++++++|++....++ ..+.+.........+....+... .. ......+.+.
T Consensus 1 MikaiiFD~DGTL~ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (221)
T d1o08a_ 1 MFKAVLFDLDGVITDTAEYHFRAWKALAEEIGINGVDRQFNEQLKGVSREDSLQKILDLADKKV-SAEEFKELAKRKNDN 79 (221)
T ss_dssp CCCEEEECCBTTTBTHHHHHHHHHHHHHHHTTCCCCCHHHHTTTTTCCHHHHHHHHHTTSSSCC-CHHHHHHHHHHHHHH
T ss_pred CCcEEEEcCCCCeEcCHHHHHHHHHHHHHHcCCCCChHHHHHHHhhccchhhhhhccccccccc-hhhhhhhHHHHHHhh
Confidence 6899999999999999999999999999999998665554 44556777777766665544322 22 3344555556
Q ss_pred HHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHH
Q 001380 154 YLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASK 233 (1089)
Q Consensus 154 ~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~ 233 (1089)
+.+.........++||+.++|+.|++.|++++++||.. .....++.+++. .+|+.++++++.+.+||+|++|+++++
T Consensus 80 ~~~~~~~~~~~~~~~g~~~~l~~l~~~~~~i~i~s~~~--~~~~~l~~~~l~-~~f~~i~~~~~~~~~KP~~~~~~~~l~ 156 (221)
T d1o08a_ 80 YVKMIQDVSPADVYPGILQLLKDLRSNKIKIALASASK--NGPFLLERMNLT-GYFDAIADPAEVAASKPAPDIFIAAAH 156 (221)
T ss_dssp HHHHTTTCCGGGBCTTHHHHHHHHHHTTCEEEECCSCT--THHHHHHHTTCG-GGCSEECCTTTSSSCTTSTHHHHHHHH
T ss_pred ccccccccccccccCCceeccccccccccceEEEeecc--hhhHHHHhhccc-cccccccccccccccccChHHHHHHHH
Confidence 66655544455789999999999999999999999964 467899999996 999999999999999999999999999
Q ss_pred HcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhc
Q 001380 234 ILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTG 297 (1089)
Q Consensus 234 ~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~ 297 (1089)
++|++|++||||||+.+|+++|+++||++|+|.++. . ...++.+++++.++++..|-+.
T Consensus 157 ~~~i~~~~~l~VgD~~~di~~A~~aG~~~i~v~~~~---~--~~~~~~~~~~~~~~~~~~l~el 215 (221)
T d1o08a_ 157 AVGVAPSESIGLEDSQAGIQAIKDSGALPIGVGRPE---D--LGDDIVIVPDTSHYTLEFLKEV 215 (221)
T ss_dssp HTTCCGGGEEEEESSHHHHHHHHHHTCEEEEESCHH---H--HCSSSEEESSGGGCCHHHHHHH
T ss_pred HcCCCCceEEEEecCHHHHHHHHHcCCEEEEECChh---h--cccccEEcCCcccCCHHHHHHH
Confidence 999999999999999999999999999999997632 2 2246778899998877666543
|
| >d2fdra1 c.108.1.6 (A:3-224) Hypothetical protein Atu0790 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: beta-Phosphoglucomutase-like domain: Hypothetical protein Atu0790 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.91 E-value=5.2e-24 Score=224.48 Aligned_cols=210 Identities=23% Similarity=0.362 Sum_probs=173.7
Q ss_pred ceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhH-hhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHH
Q 001380 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDF-LPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDK 157 (1089)
Q Consensus 79 ~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (1089)
+|+||||+||||+|++..+..++.++++++|++++.+++ ..+.+.........+....+... .....+++...+...
T Consensus 2 ~kaviFD~DGtL~dt~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 79 (222)
T d2fdra1 2 FDLIIFDCDGVLVDSEIIAAQVESRLLTEAGYPISVEEMGERFAGMTWKNILLQVESEASIPL--SASLLDKSEKLLDMR 79 (222)
T ss_dssp CSEEEECSBTTTBCCHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCCHHHHHHHHHHHHCCCC--CTHHHHHHHHHHHHH
T ss_pred ceEEEECCCCcccCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHhhhccccccccccccccccc--cccchhHHHHHHHHH
Confidence 689999999999999999999999999999999987777 45667888888888777776553 233444555555444
Q ss_pred hcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEE-cCC--ccCCCCCHHHHHHHHHH
Q 001380 158 YAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVS-ADA--FENLKPAPDIFLSASKI 234 (1089)
Q Consensus 158 ~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~-~~~--~~~~KP~~~~~~~~l~~ 234 (1089)
..... .++||+.++|+.|+. +.+|+|+.....++..++++++. .+|+.+++ +++ ....||+|++|..++++
T Consensus 80 ~~~~~--~~~~g~~~~L~~l~~---~~~i~t~~~~~~~~~~l~~~~l~-~~f~~~~~~~~~~~~~~~KP~~~~~~~~~~~ 153 (222)
T d2fdra1 80 LERDV--KIIDGVKFALSRLTT---PRCICSNSSSHRLDMMLTKVGLK-PYFAPHIYSAKDLGADRVKPKPDIFLHGAAQ 153 (222)
T ss_dssp HHHHC--CBCTTHHHHHHHCCS---CEEEEESSCHHHHHHHHHHTTCG-GGTTTCEEEHHHHCTTCCTTSSHHHHHHHHH
T ss_pred hhhcc--chhhhHHHHhhhccc---cceeeeecchhhhhhhhcccccc-cccceeecccccccccccccCHHHHHHHHHh
Confidence 43332 789999999988864 56899999999999999999997 99986554 443 45689999999999999
Q ss_pred cCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC-C----HHHHhhcCCcEEecCcccCCHHHHHhcc
Q 001380 235 LNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL-S----EERLKEASPSLIRKEIGSVSLNDILTGG 298 (1089)
Q Consensus 235 lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~-~----~~~l~~~~~d~vi~dl~el~i~~ll~~~ 298 (1089)
+|++|++|+||||+..|+.+|+++||.+|+|.++. . .+.+.+.+|+++++++.|| ..+|..+
T Consensus 154 l~~~p~~~l~vgDs~~dv~aA~~aG~~~i~v~~~~~~~~~~~~~l~~~~ad~vi~~l~eL--~~ll~~l 220 (222)
T d2fdra1 154 FGVSPDRVVVVEDSVHGIHGARAAGMRVIGFTGASHTYPSHADRLTDAGAETVISRMQDL--PAVIAAM 220 (222)
T ss_dssp HTCCGGGEEEEESSHHHHHHHHHTTCEEEEECCSTTCCTTHHHHHHHHTCSEEESCGGGH--HHHHHHH
T ss_pred hCCCCceEEEEcCCHHHHHHHHHcCCEEEEEccCCCCCcchHHHHHhCCCCEEECCHHHH--HHHHHHh
Confidence 99999999999999999999999999999999875 2 3566778999999999998 7887654
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.90 E-value=2.5e-22 Score=219.42 Aligned_cols=229 Identities=21% Similarity=0.322 Sum_probs=181.8
Q ss_pred EEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCccccc
Q 001380 634 FIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQ 713 (1089)
Q Consensus 634 ~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~ 713 (1089)
+.+.+|+.|.. .++|++|.||+++++|+ |||+|..||+|++||+++..++.+...+... .
T Consensus 8 ~~~~~G~~G~~--------~g~f~~P~gvavd~dg~-i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~-----------~ 67 (279)
T d1q7fa_ 8 YHCKFGEFGVM--------EGQFTEPSGVAVNAQND-IIVADTNNHRIQIFDKEGRFKFQFGECGKRD-----------S 67 (279)
T ss_dssp EEEEECCBSSS--------TTCBSCEEEEEECTTCC-EEEEEGGGTEEEEECTTSCEEEEECCBSSST-----------T
T ss_pred EEeecCCCcCC--------CCeECCccEEEEcCCCC-EEEEECCCCEEEEEeCCCCEEEEecccCCCc-----------c
Confidence 45567766432 34799999999999998 9999999999999999887887775333211 2
Q ss_pred ccCCceeEEEecCCCEEEE-EECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeC
Q 001380 714 LLNSPWDVCYKPINEKVYI-AMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADS 792 (1089)
Q Consensus 714 ~l~~P~~la~~~~g~~lyv-ad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~ 792 (1089)
....|+++++..+.+..++ .+..+++|+.++..+..+..+.. ..+..|.+++++++| .+|+++.
T Consensus 68 ~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~--------------~~~~~p~~~avd~~G-~i~v~~~ 132 (279)
T d1q7fa_ 68 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGA--------------TILQHPRGVTVDNKG-RIIVVEC 132 (279)
T ss_dssp CBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECT--------------TTCSCEEEEEECTTS-CEEEEET
T ss_pred cccccccccccccccccceeccCCccccccccccccceeecCC--------------CcccccceeccccCC-cEEEEee
Confidence 2458999998877555554 56667899999988777776642 346689999999998 8999999
Q ss_pred CCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEE
Q 001380 793 ESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVST 872 (1089)
Q Consensus 793 ~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t 872 (1089)
.++++.++++++..+..+.. ...+..|.+++++++|++||+|..+++|+++|+++..+.+
T Consensus 133 ~~~~~~~~~~~g~~~~~~g~--------------------~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~ 192 (279)
T d1q7fa_ 133 KVMRVIIFDQNGNVLHKFGC--------------------SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQ 192 (279)
T ss_dssp TTTEEEEECTTSCEEEEEEC--------------------TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEE
T ss_pred ccceeeEeccCCceeecccc--------------------cccccccceeeeccceeEEeeeccccceeeeecCCceeee
Confidence 99999999988654443321 1236789999999999999999999999999999888888
Q ss_pred EeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECC-CCEEEEEeCCCCCceEEEEe
Q 001380 873 LAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTN-NNIIRYLDLNKEEPELQTLE 931 (1089)
Q Consensus 873 ~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~-n~~I~~~~~~~~~~~~~~l~ 931 (1089)
++.. +.++.|.|||+|++|+|||||.. +++|.+|+.+++ .+.++.
T Consensus 193 ~g~~------------g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~--~~~~~~ 238 (279)
T d1q7fa_ 193 IGGE------------GITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ--LISALE 238 (279)
T ss_dssp ESCT------------TTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC--EEEEEE
T ss_pred eccc------------ccccCCcccccccCCeEEEEECCCCcEEEEECCCCC--EEEEEe
Confidence 7532 26788999999999999999975 568999998886 666665
|
| >d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593 species: Thermus thermophilus [TaxId: 274]
Probab=99.90 E-value=9e-24 Score=214.66 Aligned_cols=144 Identities=14% Similarity=0.126 Sum_probs=123.6
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCC--CCCh
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAK--FDNE 500 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~--~~~~ 500 (1089)
.+.+|+++|+|++ .+++|+.++| ++++||+|||+||++||++|++++|.|++|+++|++ ++.+|+|++.. ...+
T Consensus 5 ~l~vG~~aPdF~l--~d~~G~~~~L-sd~kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~-~v~~v~i~snd~~~~~~ 80 (187)
T d2cvba1 5 ELPLESPLIDAEL--PDPRGGRYRL-SQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRG-KVAFVGINANDYEKYPE 80 (187)
T ss_dssp CCCTTCBCCCCEE--ECTTSCEEEG-GGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTT-TEEEEEEECCCTTTCGG
T ss_pred CCCCCCccCccEe--ecCCCCEEEH-HHhCCCeEEEEEeCCCCccchhhhhhhhhhhhhccc-cceeeeeeccccccccc
Confidence 4578999999995 4679999999 999999999999999999999999999999999987 49999997643 2346
Q ss_pred hcHHHHHHHHHHcCCccceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecC--------CCchhhHHHHHHHHHH
Q 001380 501 KDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAG--------EGHRKDLDDLVEAALL 570 (1089)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G--------~~~~~~l~~~l~~~l~ 570 (1089)
++.+.+++++++++++||++.|.++++++.|++.++|++||||++|+|+++-.- ..+...+++.|+.+++
T Consensus 81 ~~~e~~~~~~~~~~~~~p~l~D~~~~~~~~~~v~~~P~~~liD~~G~i~y~G~idd~~~~~~~~~~~~L~~Ai~~ll~ 158 (187)
T d2cvba1 81 DAPEKMAAFAEEHGIFFPYLLDETQEVAKAYRALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLR 158 (187)
T ss_dssp GSHHHHHHHHHHHTCCSCEEECSSSHHHHHTTCCEESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHT
T ss_pred cchHHHHHHHHHhCCcceeeechhhhhcccccccceeeEEEEcCCCeEEEEeeecCCCCCCCCCCHHHHHHHHHHHHc
Confidence 788999999999999999999999999999999999999999999999987321 1223456666666664
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.90 E-value=1.6e-22 Score=224.59 Aligned_cols=262 Identities=15% Similarity=0.207 Sum_probs=192.0
Q ss_pred CCCCCCCCCCceEEEeecCCeEEEEeCC-------CCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEee
Q 001380 594 RLFTSPLKFPGKLAIDILNNRLFISDSN-------HNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNA 666 (1089)
Q Consensus 594 ~~~~~~l~~P~~vavd~~~g~L~vsd~~-------~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~ 666 (1089)
+.++..|..|.|+++|+ +|+||+++.. +++|.++++++.....+... ... ..-..|.||++++
T Consensus 11 ~~v~~~~~g~EGpa~d~-dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~-~~~--------~~~g~P~Gl~~~~ 80 (314)
T d1pjxa_ 11 TKVTEDIPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP-EVN--------GYGGIPAGCQCDR 80 (314)
T ss_dssp EEEECCCTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC-EET--------TEECCEEEEEECS
T ss_pred EEeecCCCCCeEeEEeC-CCCEEEEECccccccccCCEEEEEECCCCcEEEEECC-ccc--------cCCCcceeEEEeC
Confidence 35577899999999997 8999999865 46899999986655544433 111 0123699999999
Q ss_pred CCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC----------
Q 001380 667 KKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG---------- 736 (1089)
Q Consensus 667 ~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~---------- 736 (1089)
+|+.+||+|.. +.|.+++++++....+.. ... ...++.|++++++++| .|||++..
T Consensus 81 dg~~l~vad~~-~~i~~~~~~g~~~~~~~~-~~~-----------g~~~~~pndl~~d~~G-~lyvtd~~~~~~~~~~~~ 146 (314)
T d1pjxa_ 81 DANQLFVADMR-LGLLVVQTDGTFEEIAKK-DSE-----------GRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTR 146 (314)
T ss_dssp SSSEEEEEETT-TEEEEEETTSCEEECCSB-CTT-----------SCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCB
T ss_pred CCCEEEEEECC-CeEEEEeCCCcEEEEEec-ccc-----------ccccCCCcEEEECCCC-CEEEecCccCcccccccc
Confidence 99999999974 679999987766554432 211 1347789999999988 89999864
Q ss_pred -----CcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCC----EEEEEeCCCCeEEEEEcCCCCe
Q 001380 737 -----QHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFM----EIYVADSESSSIRALNLKTGGS 807 (1089)
Q Consensus 737 -----~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~----~lyvad~~~~~I~~~~~~~~~~ 807 (1089)
.++|+++++++.. ..+. ..+..|+||+++++++ .|||+|+.+++|++++.+....
T Consensus 147 ~~~~~~G~v~~~~~dg~~-~~~~---------------~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~ 210 (314)
T d1pjxa_ 147 SMQEKFGSIYCFTTDGQM-IQVD---------------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAK 210 (314)
T ss_dssp TTSSSCEEEEEECTTSCE-EEEE---------------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTE
T ss_pred eeccCCceEEEEeecCce-eEee---------------CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccc
Confidence 3478888876543 3333 2356799999998764 7999999999999998654332
Q ss_pred EEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEE-EEeccCCCCCCCCcc
Q 001380 808 RLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVS-TLAGIGKAGFKDGAA 886 (1089)
Q Consensus 808 ~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~-t~~g~g~~g~~~g~~ 886 (1089)
..-.. + +...++ .....|.|+++|.+|+||||+..+++|.+|||+++.+. ++..
T Consensus 211 ~~~~~--------~--~~~~~~----~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~----------- 265 (314)
T d1pjxa_ 211 IENKK--------V--WGHIPG----THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC----------- 265 (314)
T ss_dssp EEEEE--------E--EEECCC----CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC-----------
T ss_pred cceee--------E--EEEccc----cccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEEC-----------
Confidence 11000 0 000000 01235999999999999999999999999999977653 3432
Q ss_pred cccccCCCceEEEccCCc-EEEEECCCCEEEEEeCCCC
Q 001380 887 LAAQLSEPAGIIEAQNGN-LFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 887 ~~~~l~~P~gi~vd~~G~-lyVad~~n~~I~~~~~~~~ 923 (1089)
....|+++|++++++ |||++..+++|.+++....
T Consensus 266 ---p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~ 300 (314)
T d1pjxa_ 266 ---PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp ---SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred ---CCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence 235699999998884 9999999999999998765
|
| >d2fi1a1 c.108.1.3 (A:4-190) Putative hydrolase SP0805 {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Phosphonoacetaldehyde hydrolase-like domain: Putative hydrolase SP0805 species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.90 E-value=9.8e-24 Score=216.12 Aligned_cols=180 Identities=19% Similarity=0.270 Sum_probs=150.5
Q ss_pred CCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 001380 77 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLD 156 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1089)
|++|+|+||+||||+|+...+..++.++++++|+..+.+.+....+.......+.+.. ..+...+.+.+.+..
T Consensus 1 M~~k~viFD~DGTL~dt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 73 (187)
T d2fi1a1 1 MKYHDYIWDLGGTLLDNYETSTAAFVETLALYGITQDHDSVYQALKVSTPFAIETFAP-------NLENFLEKYKENEAR 73 (187)
T ss_dssp CCCSEEEECTBTTTBCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHCHHHHHHHHCT-------TCTTHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCcccCHHHHHHHHHHHHHHcCCCccHHHHHhhhhccchhhhhhhhH-------HHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999988888877776665555444322 122334455555555
Q ss_pred HhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcC
Q 001380 157 KYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILN 236 (1089)
Q Consensus 157 ~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lg 236 (1089)
..... .++||+.++|+.|+++|++++|+||...... ..++++++. .+||.+++++++...||+|++|+.++++++
T Consensus 74 ~~~~~---~~~~gv~~~l~~l~~~g~~~~i~Sn~~~~~~-~~l~~~~l~-~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~ 148 (187)
T d2fi1a1 74 ELEHP---ILFEGVSDLLEDISNQGGRHFLVSHRNDQVL-EILEKTSIA-AYFTEVVTSSSGFKRKPNPESMLYLREKYQ 148 (187)
T ss_dssp HTTSC---CBCTTHHHHHHHHHHTTCEEEEECSSCTHHH-HHHHHTTCG-GGEEEEECGGGCCCCTTSCHHHHHHHHHTT
T ss_pred HhhcC---cccchhHHHHHHHHhhhccccccccCccchh-hhhhhhccc-cccccccccccccccCCCHHHHHHHHHHcC
Confidence 54433 7899999999999999999999999876655 579999996 999999999999999999999999999998
Q ss_pred CCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCC
Q 001380 237 VPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLS 270 (1089)
Q Consensus 237 v~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~ 270 (1089)
+ ++|+||||+..|+++|+++|+++++|+++..
T Consensus 149 ~--~~~l~vgDs~~Di~aA~~aG~~~i~v~~~~~ 180 (187)
T d2fi1a1 149 I--SSGLVIGDRPIDIEAGQAAGLDTHLFTSIVN 180 (187)
T ss_dssp C--SSEEEEESSHHHHHHHHHTTCEEEECSCHHH
T ss_pred C--CCeEEEeCCHHHHHHHHHcCCEEEEECCCCC
Confidence 7 5699999999999999999999999987543
|
| >d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol-disulfide oxidoreductase ResA species: Bacillus subtilis [TaxId: 1423]
Probab=99.90 E-value=1.2e-23 Score=203.63 Aligned_cols=133 Identities=27% Similarity=0.462 Sum_probs=123.1
Q ss_pred CCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHH
Q 001380 426 TTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEA 505 (1089)
Q Consensus 426 ~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~ 505 (1089)
.|+++|+|++. +++|+++++ ++++||++||+||++||++|.+++|.+++++++|.+.++.+|+|++ +++.+.
T Consensus 1 ~G~~~P~f~l~--~~~G~~~~l-~~~~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~-----~~~~~~ 72 (137)
T d1st9a_ 1 EGSDAPNFVLE--DTNGKRIEL-SDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNV-----GESKIA 72 (137)
T ss_dssp CCEECCCCEEE--CTTSCEEEG-GGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEE-----SCCHHH
T ss_pred CcCcCCCeEEE--CCCcCEEeH-HHhCCCEEEEEEeeccccceeecccccccccccccccccccccccc-----cchhhh
Confidence 38899999964 669999999 9999999999999999999999999999999999988999999975 467899
Q ss_pred HHHHHHHcCCccceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHH
Q 001380 506 IRNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVE 566 (1089)
Q Consensus 506 ~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~ 566 (1089)
+++++++++++||++.|.+.++++.|++.++|++||||++|++++++.|..+.+.++++++
T Consensus 73 ~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~ 133 (137)
T d1st9a_ 73 VHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYMN 133 (137)
T ss_dssp HHHHHHHTTCCSCEEEETTSHHHHHTTCCSSCEEEEECTTSEEEEEEESCCCHHHHHHHHH
T ss_pred HHHHHHHcCCCccccccccchhhhhhhccccceEEEECCCCEEEEEEECCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988877766654
|
| >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Soluble secreted antigen MPT53 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.88 E-value=4.2e-23 Score=198.66 Aligned_cols=131 Identities=27% Similarity=0.397 Sum_probs=115.6
Q ss_pred CCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHH
Q 001380 427 TPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAI 506 (1089)
Q Consensus 427 g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~ 506 (1089)
|+..++|+++ +++|+++++ ++++||++||+||++||++|+.++|.|++++++++ ++.+++|+. +++.+.+
T Consensus 1 ~d~~~~f~~~--~~~G~~~~l-~~~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~--~v~~v~v~~-----~~~~~~~ 70 (134)
T d1lu4a_ 1 ADERLQFTAT--TLSGAPFDG-ASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP--AVTFVGIAT-----RADVGAM 70 (134)
T ss_dssp CGGGGCCEEE--BTTSCEEEG-GGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEEC-----SSCHHHH
T ss_pred CCCCCcceeE--CCCCCEEcH-HHhCCCEEEEEEeecccCCceecchhHHHHhhhhc--ccccccccc-----ccchhhh
Confidence 5678899954 569999999 99999999999999999999999999999999875 578888864 4678899
Q ss_pred HHHHHHcCCccceeecCChhHHHHhCCCceeEEEEECCCCcEEEE--ecCCCchhhHHHHHHH
Q 001380 507 RNAVLRYGISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQ--LAGEGHRKDLDDLVEA 567 (1089)
Q Consensus 507 ~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~--~~G~~~~~~l~~~l~~ 567 (1089)
++++++++++||++.|.++.+++.|++.++|+++|||++|++++. ..|..+.+++.+.|++
T Consensus 71 ~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~v~~~~g~~~~~~l~~~l~~ 133 (134)
T d1lu4a_ 71 QSFVSKYNLNFTNLNDADGVIWARYNVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAA 133 (134)
T ss_dssp HHHHHHHTCCSEEEECTTSHHHHHTTCCSSSEEEEECTTSCEEEECCSSSCCCHHHHHHHHHH
T ss_pred hhhhhhhccccceeeCchHHHHHHcCCCcCCEEEEEeCCCeEEEEeccCCCCCHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999876 4566677777776654
|
| >d2gfha1 c.108.1.6 (A:1-247) N-acylneuraminate-9-phosphatase NANP {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: beta-Phosphoglucomutase-like domain: N-acylneuraminate-9-phosphatase NANP species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.88 E-value=5.7e-23 Score=220.20 Aligned_cols=216 Identities=18% Similarity=0.280 Sum_probs=157.0
Q ss_pred CCCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCC----HHhHhh------------hcCCCHHH----HHHHHHhh
Q 001380 76 WGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVT----VEDFLP------------FMGTGEAN----FLGGVASV 135 (1089)
Q Consensus 76 ~~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~----~~~~~~------------~~~~~~~~----~~~~~~~~ 135 (1089)
+.+||+|+||+||||++.......++.++++.++.... ...+.. ........ .+......
T Consensus 3 m~~IKaviFD~dGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (247)
T d2gfha1 3 LSRVRAVFFDLDNTLIDTAGASRRGMLEVIKLLQSKYHYKEEAEIICDKVQVKLSKECFHPYSTCITDVRTSHWEEAIQE 82 (247)
T ss_dssp CCCCCEEEECCBTTTBCHHHHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHHHTCCCC----CHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEcCCCCcCcChHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 45799999999999999888888888887776533211 111110 00111111 11111111
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEc
Q 001380 136 KGVKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSA 215 (1089)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~ 215 (1089)
..... .......+....+....... ..++||+.++|+.|++ |++++|+||+....++..++++|+. .+||.++++
T Consensus 83 ~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~~L~~-~~~l~i~Tn~~~~~~~~~l~~~gl~-~~fd~i~~s 157 (247)
T d2gfha1 83 TKGGA-DNRKLAEECYFLWKSTRLQH--MILADDVKAMLTELRK-EVRLLLLTNGDRQTQREKIEACACQ-SYFDAIVIG 157 (247)
T ss_dssp HHCSS-CCHHHHHHHHHHHHHHHHHT--CCCCHHHHHHHHHHHT-TSEEEEEECSCHHHHHHHHHHHTCG-GGCSEEEEG
T ss_pred hcccc-chHHHHHHHHHHHHHhhhcc--CccCccHHHHHHHhhc-ccceEEeecccchhhhhhhhhcccc-ccccccccc
Confidence 11111 33344444444443333222 2789999999999985 7999999999999999999999996 999999999
Q ss_pred CCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCCh-hhHHHHHHcCCeEEE-EcCCCCHHHHhhcCCcEEecCcccCCHHH
Q 001380 216 DAFENLKPAPDIFLSASKILNVPTSECIVIEDAL-AGVQAAKAAQMRCIA-VTTTLSEERLKEASPSLIRKEIGSVSLND 293 (1089)
Q Consensus 216 ~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~-~Di~aA~~aG~~~i~-V~~g~~~~~l~~~~~d~vi~dl~el~i~~ 293 (1089)
++.+..||+|++|+.+++++|++|++|+||||++ +|+.+|+++||++++ ++.+..........|++++.++.+| .+
T Consensus 158 ~~~~~~KP~p~~~~~~~~~~~~~~~~~l~iGD~~~~Di~~A~~~G~~~~~~~~~~~~~~~~~~~~p~~~i~~l~eL--~~ 235 (247)
T d2gfha1 158 GEQKEEKPAPSIFYHCCDLLGVQPGDCVMVGDTLETDIQGGLNAGLKATVWINKSGRVPLTSSPMPHYMVSSVLEL--PA 235 (247)
T ss_dssp GGSSSCTTCHHHHHHHHHHHTCCGGGEEEEESCTTTHHHHHHHTTCSEEEEECTTCCCCSSCCCCCSEEESSGGGH--HH
T ss_pred cccccchhhhhhHHHHHHHhhcCHHhcceeccChHhHHHHHHHcCCeEEEEECCCCCCcccccCCCCEEECCHHHH--HH
Confidence 9999999999999999999999999999999998 899999999998665 4443344444556899999999998 88
Q ss_pred HHhcc
Q 001380 294 ILTGG 298 (1089)
Q Consensus 294 ll~~~ 298 (1089)
||+..
T Consensus 236 ll~~i 240 (247)
T d2gfha1 236 LLQSI 240 (247)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
|
| >d1x42a1 c.108.1.1 (A:1-230) Hypothetical protein PH0459 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: HAD-related domain: Hypothetical protein PH0459 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.88 E-value=2.1e-22 Score=213.44 Aligned_cols=207 Identities=20% Similarity=0.253 Sum_probs=149.9
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcC-CCCCHHhHhhhcC---------------CCHHH----HHHHHHhhcC
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMG-VEVTVEDFLPFMG---------------TGEAN----FLGGVASVKG 137 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g-~~~~~~~~~~~~~---------------~~~~~----~~~~~~~~~~ 137 (1089)
|+|+|+||+||||+|.......+...+.+.++ .....+.+..... ..... ....+....+
T Consensus 1 MiK~I~FD~dGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (230)
T d1x42a1 1 MIRAVFFDFVGTLLSVEGEAKTHLKIMEEVLGDYPLNPKTLLDEYEKLTREAFSNYAGKPYRPIRDIEEEVMRKLAEKYG 80 (230)
T ss_dssp CCCEEEECSBTTTBCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHHHHHHHHHHTTSBCCCHHHHHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCcEechhhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHhh
Confidence 58999999999999988766666665555543 2233332221111 11111 1111122222
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCC
Q 001380 138 VKGFDSEAAKKRFFEIYLDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADA 217 (1089)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~ 217 (1089)
... .+...+.+.+.+... ..++||+.++|+.|++ |++++|+||+....++..++.+|+. .+||.++++++
T Consensus 81 ~~~--~~~~~~~~~~~~~~~------~~~~p~~~~~L~~l~~-~~~i~i~Sn~~~~~~~~~l~~~gl~-~~fd~i~~s~~ 150 (230)
T d1x42a1 81 FKY--PENFWEIHLRMHQRY------GELYPEVVEVLKSLKG-KYHVGMITDSDTEYLMAHLDALGIK-DLFDSITTSEE 150 (230)
T ss_dssp CCC--CTTHHHHHHHHHHHH------CCBCTTHHHHHHHHBT-TBEEEEEESSCHHHHHHHHHHHTCG-GGCSEEEEHHH
T ss_pred hch--HHHHHHHHHHHHHhh------CcccccHHHHHHHhhc-cCceeeeeccccccchhhhcccccc-ccccccccccc
Confidence 211 011111111111111 2679999999999975 6999999999999999999999996 99999999999
Q ss_pred ccCCCCCHHHHHHHHHHcCCCCCcEEEEcCCh-hhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHh
Q 001380 218 FENLKPAPDIFLSASKILNVPTSECIVIEDAL-AGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILT 296 (1089)
Q Consensus 218 ~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~ 296 (1089)
.+..||+|++|+.+++++|++|++|+||||+. +|+.+|+++||++++|.++....... ..|++++.++.+| .++|+
T Consensus 151 ~~~~KP~~~~~~~~~~~l~~~p~~~l~vgD~~~~Di~~A~~~G~~~v~v~~~~~~~~~~-~~~d~~i~~l~el--~~~l~ 227 (230)
T d1x42a1 151 AGFFKPHPRIFELALKKAGVKGEEAVYVGDNPVKDCGGSKNLGMTSILLDRKGEKREFW-DKCDFIVSDLREV--IKIVD 227 (230)
T ss_dssp HTBCTTSHHHHHHHHHHHTCCGGGEEEEESCTTTTHHHHHTTTCEEEEECTTSCCGGGG-GGSSEEESSTTHH--HHHHH
T ss_pred ccccchhhHHHHHHHhhhcccccccceeecCcHhHHHHHHHcCCEEEEECCCCCCcccc-cCCCEEECCHHHH--HHHHH
Confidence 99999999999999999999999999999997 89999999999999999876444443 4789999999998 67765
Q ss_pred c
Q 001380 297 G 297 (1089)
Q Consensus 297 ~ 297 (1089)
.
T Consensus 228 ~ 228 (230)
T d1x42a1 228 E 228 (230)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.88 E-value=5e-21 Score=206.14 Aligned_cols=225 Identities=18% Similarity=0.238 Sum_probs=183.1
Q ss_pred CCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCC
Q 001380 600 LKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENH 679 (1089)
Q Consensus 600 l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~ 679 (1089)
.+.+.+|++|..+++||++|..+++|.+.+.+|....++...+ +..|.|||+|..++.||++|...+
T Consensus 35 ~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~-------------~~~p~~iAvD~~~~~lY~~d~~~~ 101 (263)
T d1npea_ 35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD-------------LGSPEGIALDHLGRTIFWTDSQLD 101 (263)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT-------------CCCEEEEEEETTTTEEEEEETTTT
T ss_pred CCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEec-------------cccccEEEEeccCCeEEEeccCCC
Confidence 3456689999989999999999999999999987666554332 347999999988888999999999
Q ss_pred EEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC--cEEEEEECCCCeEEEEeCCC
Q 001380 680 ALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ--HQIWEHSTVDGVTRAFSGDG 757 (1089)
Q Consensus 680 ~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~--~~I~~~~~~~g~~~~~~g~g 757 (1089)
+|.++++++...+++...+ +..|++|++||.++.||+++.+. .+|++.+.++.....+..
T Consensus 102 ~I~~~~~dg~~~~~l~~~~----------------l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~-- 163 (263)
T d1npea_ 102 RIEVAKMDGTQRRVLFDTG----------------LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ-- 163 (263)
T ss_dssp EEEEEETTSCSCEEEECSS----------------CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEEC--
T ss_pred EEEEEecCCceEEEEeccc----------------ccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeee--
Confidence 9999999988777776432 45899999999999999999874 469999987765555542
Q ss_pred ccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCcccccccc
Q 001380 758 YERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQ 837 (1089)
Q Consensus 758 ~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~ 837 (1089)
..+..|.||++|+.+++||++|.++++|.+++.+++..+.+..+ ++
T Consensus 164 ------------~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~----------------------~~ 209 (263)
T d1npea_ 164 ------------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG----------------------LQ 209 (263)
T ss_dssp ------------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC----------------------CC
T ss_pred ------------ecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECC----------------------CC
Confidence 33568999999998889999999999999999987766655432 67
Q ss_pred CceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccC
Q 001380 838 HPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQN 902 (1089)
Q Consensus 838 ~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~ 902 (1089)
+|.||+++ +++|||+|+.+++|.++|..++...++.... ....|.||++..+
T Consensus 210 ~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~------------~~~~~~gi~v~~~ 261 (263)
T d1npea_ 210 YPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPH------------KQTRLYGITIALS 261 (263)
T ss_dssp SEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCS------------SCCCCCCEEEECS
T ss_pred CcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEECCC------------CCCCcceEEEeCC
Confidence 89999998 6899999999999999999888766554321 3467999998653
|
| >d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Lipoprotein DsbF species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.87 E-value=2.9e-22 Score=192.94 Aligned_cols=127 Identities=26% Similarity=0.444 Sum_probs=111.4
Q ss_pred CCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHH
Q 001380 431 PEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAV 510 (1089)
Q Consensus 431 P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~ 510 (1089)
.+|+ +.+++|+++++ ++++||++||+||++||++|+.++|.|+++++++++ +.+++|+. .++.+.+++++
T Consensus 6 ~df~--~~~~~G~~~~l-~~~~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~--~~~v~v~~-----~d~~~~~~~~~ 75 (134)
T d1zzoa1 6 LQFS--AKTLDGHDFHG-ESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE--VTFVGVAG-----LDQVPAMQEFV 75 (134)
T ss_dssp GCCE--EEBTTSCEEEG-GGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEEC-----SSCHHHHHHHH
T ss_pred ccee--EEcCCCCEEeH-HHhCCCEEEEEecccccCcccccchhhHHHHhhhcc--cccccccc-----cccchhHHHHH
Confidence 4577 56779999999 899999999999999999999999999999999975 45566643 56788899999
Q ss_pred HHcCCc-cceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 511 LRYGIS-HPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 511 ~~~~~~-~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
+++++. ++++.|.++++++.|++.++|++|+||++|+|++ +.|..+.+++.+.|+++
T Consensus 76 ~~~~~~~~~~l~D~~~~~~~~~~v~~~P~~~iiD~~G~i~~-~~g~~~~~~l~~~i~~L 133 (134)
T d1zzoa1 76 NKYPVKTFTQLADTDGSVWANFGVTQQPAYAFVDPHGNVDV-VRGRMSQDELTRRVTAL 133 (134)
T ss_dssp HHTTCTTSEEEECTTCHHHHHTTCCSSSEEEEECTTCCEEE-EESCCCHHHHHHHHHHH
T ss_pred HhcCCcceeEEeeccchHHHhcCCCccCeEEEECCCCeEEE-EECCCCHHHHHHHHHhh
Confidence 999987 7999999999999999999999999999999876 46888888888887764
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Probab=99.87 E-value=4.8e-23 Score=200.97 Aligned_cols=132 Identities=20% Similarity=0.309 Sum_probs=117.5
Q ss_pred ccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcC-
Q 001380 436 KLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYG- 514 (1089)
Q Consensus 436 ~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~- 514 (1089)
++.+.+|+++++ .+++||++||+|||+||++|+.++|.|++++++++..++.+|+|++..+..+.+.....++..+.+
T Consensus 7 ~l~~~~~~~~~l-~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 85 (143)
T d2fy6a1 7 TLKTADNRPASV-YLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNY 85 (143)
T ss_dssp TCEETTSCBGGG-GCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCC
T ss_pred eeECCCCCEeeH-HHhCCCEEEEEEECCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhcCC
Confidence 355679999999 999999999999999999999999999999999998899999999887776666666666666655
Q ss_pred CccceeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 515 ISHPVVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 515 ~~~~v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
..||++.|.++.+++.|++.++|++++||++|+|++++.|..+.+++.++|+++
T Consensus 86 ~~~~~~~D~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~~ 139 (143)
T d2fy6a1 86 PKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRDP 139 (143)
T ss_dssp TTSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCT
T ss_pred cccccccccchHHHHHcCCCccCEEEEECCCCEEEEEEECCCCHHHHHHHHHHH
Confidence 458999999999999999999999999999999999999999988888877654
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.86 E-value=5.3e-21 Score=206.47 Aligned_cols=201 Identities=23% Similarity=0.326 Sum_probs=158.4
Q ss_pred CCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC
Q 001380 598 SPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE 677 (1089)
Q Consensus 598 ~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~ 677 (1089)
..+..|.+|++++ +|+|||+|..+++|.+++ ++.....+... .+..|.+|+++++|+ ||++|..
T Consensus 54 ~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~-~~~~~~~~~~~-------------~~~~p~~iavd~~g~-i~v~d~~ 117 (260)
T d1rwia_ 54 NGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAA-GSNNQTVLPFD-------------GLNYPEGLAVDTQGA-VYVADRG 117 (260)
T ss_dssp CSCCSCCCEEECT-TCCEEEEETTTEEEEECT-TCSCCEECCCC-------------SCCSEEEEEECTTCC-EEEEEGG
T ss_pred CCccCceEEEEcC-CCCEEEeeeeeceeeeee-eccceeeeeee-------------eeeecccccccccce-eEeeccc
Confidence 4567899999997 889999999887776543 33333222221 256899999999998 9999999
Q ss_pred CCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCC
Q 001380 678 NHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDG 757 (1089)
Q Consensus 678 n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g 757 (1089)
++++.+++..+.....+...+ +..|.+|+++++| .+|+++..+++|.+++.++.....+..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~----------------~~~p~~i~~~~~g-~~~v~~~~~~~i~~~d~~~~~~~~~~~-- 178 (260)
T d1rwia_ 118 NNRVVKLAAGSKTQTVLPFTG----------------LNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNNQVVLPF-- 178 (260)
T ss_dssp GTEEEEECTTCSSCEECCCCS----------------CCSCCEEEECTTC-CEEEEEGGGTEEEEECTTTCCEEECCC--
T ss_pred cccccccccccceeeeeeecc----------------cCCcceeeecCCC-CEeeeccccccccccccccceeeeeec--
Confidence 999999998776655543222 5689999999987 699999999999999988766554431
Q ss_pred ccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCcccccccc
Q 001380 758 YERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQ 837 (1089)
Q Consensus 758 ~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~ 837 (1089)
..+.+|.||+++++| +|||+|..+++|.+++++++....+.. ..+.
T Consensus 179 ------------~~~~~p~gi~~d~~g-~l~vsd~~~~~i~~~~~~~~~~~~~~~---------------------~~~~ 224 (260)
T d1rwia_ 179 ------------TDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTTSTVLPF---------------------TGLN 224 (260)
T ss_dssp ------------SSCCSEEEEEECTTC-CEEEEETTTTEEEEECTTCSCCEECCC---------------------CSCC
T ss_pred ------------cccCCCccceeeeee-eeeeeecCCCEEEEEeCCCCeEEEEcc---------------------CCCC
Confidence 446789999999998 899999999999999987654433311 1266
Q ss_pred CceEEEEccCCcEEEEeCCCCEEEEEeCCC
Q 001380 838 HPLGVYCAKNGQIYVADSYNHKIKKLDPAS 867 (1089)
Q Consensus 838 ~P~gva~~~~G~lyVaD~~n~~I~~~d~~~ 867 (1089)
.|.+|+++++|+|||+|..+++|++|+...
T Consensus 225 ~P~~i~~d~~g~l~vad~~~~rI~~i~~~~ 254 (260)
T d1rwia_ 225 TPLAVAVDSDRTVYVADRGNDRVVKLTSLE 254 (260)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred CeEEEEEeCCCCEEEEECCCCEEEEEeCCC
Confidence 899999999999999999999999998643
|
| >d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.86 E-value=7.6e-22 Score=192.41 Aligned_cols=134 Identities=25% Similarity=0.364 Sum_probs=113.5
Q ss_pred CCCCCcccc------CCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhc
Q 001380 429 IVPEFPAKL------DWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKD 502 (1089)
Q Consensus 429 ~~P~f~~~~------~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~ 502 (1089)
+||+|+++. .+.++..+++ ++++||++||+||++||++|+.++|.++++++++ ++.+++|+. ..+
T Consensus 2 paP~~~lp~~~g~~~~~~~~~~~~~-~~~kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~---~~~~~~i~~-----~~~ 72 (144)
T d1knga_ 2 PAPQTALPPLEGLQADNVQVPGLDP-AAFKGKVSLVNVWASWCVPCHDEAPLLTELGKDK---RFQLVGINY-----KDA 72 (144)
T ss_dssp BCCCCCBCCCTTCEETTEECCCBCG-GGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTCT---TSEEEEEEE-----SCC
T ss_pred CCCCCCCCCCCCccccCCcCCccCH-HHhCCCEEEEEeeccccccccccCchhhhhhhcc---CceeEEEEe-----eec
Confidence 566666421 1223356888 9999999999999999999999999999886654 577888865 566
Q ss_pred HHHHHHHHHHcCCccc-eeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHH
Q 001380 503 LEAIRNAVLRYGISHP-VVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLF 571 (1089)
Q Consensus 503 ~~~~~~~~~~~~~~~~-v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~ 571 (1089)
..+.+++.++++..++ ++.|+++++++.|++.++|+++|||++|+|++++.|..+.+++++.|++.+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~~l~k 142 (144)
T d1knga_ 73 ADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPETFVVGREGTIVYKLVGPITPDNLRSVLLPQMEK 142 (144)
T ss_dssp HHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSCEEEEECTTSBEEEEEESCCCHHHHHHTHHHHHHH
T ss_pred hHHHHHHHHHcCCccccccccccchhhhhcCccccceEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 7788899999999985 78899999999999999999999999999999999999999999999888775
|
| >d1zrna_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., strain YL [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: HAD-related domain: L-2-Haloacid dehalogenase, HAD species: Pseudomonas sp., strain YL [TaxId: 306]
Probab=99.85 E-value=1.8e-21 Score=204.31 Aligned_cols=123 Identities=21% Similarity=0.292 Sum_probs=113.6
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEE
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIV 244 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~ 244 (1089)
.+++++.++++.|++++++++++||+.....+..++..++. .+||.++++++.+..||+|++|+.+++++|++|++|+|
T Consensus 93 ~~~~~~~~~l~~l~~~~~~~~i~tn~~~~~~~~~~~~~~~~-~~fd~~~~s~~~~~~KP~p~~~~~~~~~~g~~p~e~l~ 171 (220)
T d1zrna_ 93 APFSEVPDSLRELKRRGLKLAILSNGSPQSIDAVVSHAGLR-DGFDHLLSVDPVQVYKPDNRVYELAEQALGLDRSAILF 171 (220)
T ss_dssp EECTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCG-GGCSEEEESGGGTCCTTSHHHHHHHHHHHTSCGGGEEE
T ss_pred cccchhHHHHHHHHhcCCeEEeecchHHHHHHHHHhhcccc-ccccceeeeeeeeccccHHHHHHHHHHHhCCCCceEEE
Confidence 67999999999999999999999999999999999999996 99999999999999999999999999999999999999
Q ss_pred EcCChhhHHHHHHcCCeEEEEcCCC-CHHHHhhcCCcEEecCcccC
Q 001380 245 IEDALAGVQAAKAAQMRCIAVTTTL-SEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 245 VGD~~~Di~aA~~aG~~~i~V~~g~-~~~~l~~~~~d~vi~dl~el 289 (1089)
|||+..|+.+|+++||++++|.++. ..+++ ...||++++++.+|
T Consensus 172 VgD~~~Di~~A~~aG~~~v~v~r~~~~~~~~-~~~~d~~i~~l~el 216 (220)
T d1zrna_ 172 VASNAWDATGARYFGFPTCWINRTGNVFEEM-GQTPDWEVTSLRAV 216 (220)
T ss_dssp EESCHHHHHHHHHHTCCEEEECTTCCCCCSS-SCCCSEEESSHHHH
T ss_pred EecChHhHHHHHHcCCEEEEEcCCCCCcccc-cCCCCEEECCHHHH
Confidence 9999999999999999999998754 33333 45699999998776
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=2.1e-19 Score=193.88 Aligned_cols=226 Identities=20% Similarity=0.256 Sum_probs=176.5
Q ss_pred CCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEE----EEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEE
Q 001380 598 SPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFI----VQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYV 673 (1089)
Q Consensus 598 ~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~----~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyV 673 (1089)
.++..|.+|++|+.+++||++|...++|.+.+.+|... .++... .+..|.|||+|+.++.|||
T Consensus 27 ~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~-------------~~~~p~glAvD~~~~~lY~ 93 (266)
T d1ijqa1 27 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-------------DIQAPDGLAVDWIHSNIYW 93 (266)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS-------------SCSCCCEEEEETTTTEEEE
T ss_pred CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeC-------------CCCCcceEEEeeccceEEE
Confidence 45677889999998999999999999999998876421 122221 1468999999998888999
Q ss_pred EECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC-cEEEEEECCCCeEEE
Q 001380 674 ADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ-HQIWEHSTVDGVTRA 752 (1089)
Q Consensus 674 aD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~-~~I~~~~~~~g~~~~ 752 (1089)
+|..+++|.++++++.....+...+ +..|.+|+++|..+.||+++.+. .+|++.+.++.....
T Consensus 94 ~d~~~~~I~v~~~~g~~~~~~~~~~----------------~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~ 157 (266)
T d1ijqa1 94 TDSVLGTVSVADTKGVKRKTLFREN----------------GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 157 (266)
T ss_dssp EETTTTEEEEEETTSSSEEEEEECT----------------TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred EecCCCEEEeEecCCceEEEEEcCC----------------CCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceec
Confidence 9999999999999988776665322 45899999999888999999875 489999988777766
Q ss_pred EeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccc
Q 001380 753 FSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGS 832 (1089)
Q Consensus 753 ~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~ 832 (1089)
+.. ..+..|+||++|+.+++||++|...++|.+++++++....+..+.
T Consensus 158 l~~--------------~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~------------------ 205 (266)
T d1ijqa1 158 LVT--------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE------------------ 205 (266)
T ss_dssp EEC--------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECT------------------
T ss_pred ccc--------------cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCC------------------
Confidence 653 235679999999988899999999999999999877665554321
Q ss_pred cccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCe-EEEEeccCCCCCCCCcccccccCCCceEEEc
Q 001380 833 EVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNR-VSTLAGIGKAGFKDGAALAAQLSEPAGIIEA 900 (1089)
Q Consensus 833 ~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~-v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd 900 (1089)
..+.+|.+|+++ +++|||+|..+++|.+++..++. ++.+.. .+..|.+|.+-
T Consensus 206 -~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~~~~~~~--------------~~~~p~~i~v~ 258 (266)
T d1ijqa1 206 -KRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAE--------------NLLSPEDMVLF 258 (266)
T ss_dssp -TTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEEC--------------SCSCCCCEEEE
T ss_pred -CcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCcceEEEEc--------------CCCCceEEEEE
Confidence 126789999999 68999999999999999976654 344432 35668887763
|
| >d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=6.7e-22 Score=190.78 Aligned_cols=124 Identities=23% Similarity=0.262 Sum_probs=109.9
Q ss_pred CCceeeccccc-CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCcc-c
Q 001380 441 NTAPLQFRRDL-KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISH-P 518 (1089)
Q Consensus 441 ~g~~~~l~~~~-~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~-~ 518 (1089)
+|+.++. +++ +||+|||+|||+||++|+.++|.|++++++ ++.+++++. +.+...+..++.+++..+ +
T Consensus 8 ~g~~~~~-~~l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~----~~~vi~i~~-----~~~~~~~~~~~~~~~~~~~~ 77 (136)
T d1z5ye1 8 PGQFYQA-DVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSAQ----GIRVVGMNY-----KDDRQKAISWLKELGNPYAL 77 (136)
T ss_dssp TTCEECH-HHHHSSSCEEEEEECTTCHHHHHHHHHHHHHHHT----TCCEEEEEE-----SCCHHHHHHHHHHHCCCCSE
T ss_pred CCcEecH-HHHcCCCEEEEEEEcCcCCCcCccccchhhhhhh----hhhhccccc-----ccchhhhHHHHHHcCCccce
Confidence 5888888 777 899999999999999999999999998763 678888864 567788888889988886 4
Q ss_pred eeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHHhcc
Q 001380 519 VVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFYGK 574 (1089)
Q Consensus 519 v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~~~~ 574 (1089)
++.|.++.+++.|++.++|+++|||++|+|++++.|..+.+.+++.|+++++.+.+
T Consensus 78 ~~~d~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~ll~kl~~ 133 (136)
T d1z5ye1 78 SLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWEKYSK 133 (136)
T ss_dssp EEEESSCHHHHHHTCCSBSEEEEECTTSCEEEEEESCCCHHHHHHHTHHHHHHHHH
T ss_pred eecccchhHHHhcccCCcceEEEEcCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999998887653
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.85 E-value=7.5e-20 Score=203.54 Aligned_cols=240 Identities=13% Similarity=0.113 Sum_probs=176.6
Q ss_pred CCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC----
Q 001380 602 FPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE---- 677 (1089)
Q Consensus 602 ~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~---- 677 (1089)
+..|+++|+ +|+||++|..+++|++++++|+....+.... ...|.||+++++|+ |||++..
T Consensus 41 ~lEG~~~D~-~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~-------------~~~p~gla~~~dG~-l~va~~~~~~~ 105 (319)
T d2dg1a1 41 QLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVSH-------------KANPAAIKIHKDGR-LFVCYLGDFKS 105 (319)
T ss_dssp CEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECS-------------SSSEEEEEECTTSC-EEEEECTTSSS
T ss_pred CcEeCEECC-CCCEEEEECCCCEEEEEECCCCeEEEEEeCC-------------CCCeeEEEECCCCC-EEEEecCCCcc
Confidence 347999996 7889999999999999999976544332221 12689999999998 9999864
Q ss_pred CCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC------cEEEEEECCCCeEE
Q 001380 678 NHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ------HQIWEHSTVDGVTR 751 (1089)
Q Consensus 678 n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~------~~I~~~~~~~g~~~ 751 (1089)
...|..++..++.+..+..... ....|.+++++++| .+|+++... +.+++++++++.+.
T Consensus 106 ~~~i~~~~~~~~~~~~~~~~~~--------------~~~~~nd~~~d~~G-~l~vtd~~~~~~~~~g~v~~~~~dg~~~~ 170 (319)
T d2dg1a1 106 TGGIFAATENGDNLQDIIEDLS--------------TAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVT 170 (319)
T ss_dssp CCEEEEECTTSCSCEEEECSSS--------------SCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEE
T ss_pred ceeEEEEcCCCceeeeeccCCC--------------cccCCcceeEEecc-ceeecccccccccCcceeEEEecccceeE
Confidence 4578889988888777764221 13479999999998 799998653 46899998877776
Q ss_pred EEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCe--EEEecCCCCCCCCccccCCCCC
Q 001380 752 AFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGS--RLLAGGDPIFPDNLFKFGDRDG 829 (1089)
Q Consensus 752 ~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~--~~~~g~~~~~~~~l~~~g~~dg 829 (1089)
.+. ..+..|+||+++++++.|||+|+.+++|++++.+.... ....+. .
T Consensus 171 ~~~---------------~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~---------------~ 220 (319)
T d2dg1a1 171 PII---------------QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGAT---------------I 220 (319)
T ss_dssp EEE---------------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEE---------------E
T ss_pred EEe---------------eccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccce---------------e
Confidence 664 23567999999999989999999999999998764321 111100 0
Q ss_pred ccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEEE
Q 001380 830 MGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIA 908 (1089)
Q Consensus 830 ~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVa 908 (1089)
.........|.|+++|++|+||||+..+++|.+||+++..+.++.-.+.. ......+..+++.++++ +|++
T Consensus 221 ~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~~l~~i~~P~~~--------~~~~~~~~~~~~~~~~~~~~~t 292 (319)
T d2dg1a1 221 PYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRD--------EGHMLRSTHPQFIPGTNQLIIC 292 (319)
T ss_dssp EEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTGG--------GTCSCBCCEEEECTTSCEEEEE
T ss_pred eeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCCcEEEEEeCCCcC--------CCcCceeeeEEEeCCCCEEEEE
Confidence 00011134599999999999999999999999999998888887632211 11344577888876654 6665
Q ss_pred E
Q 001380 909 D 909 (1089)
Q Consensus 909 d 909 (1089)
.
T Consensus 293 ~ 293 (319)
T d2dg1a1 293 S 293 (319)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=5.7e-19 Score=190.45 Aligned_cols=231 Identities=16% Similarity=0.171 Sum_probs=180.9
Q ss_pred eEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCe---
Q 001380 614 RLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDT--- 690 (1089)
Q Consensus 614 ~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~--- 690 (1089)
.|+++.. +.|.+++.++.....+... +..|.+|++|..++.||++|...+.|++.++++..
T Consensus 3 fLl~s~~--~~I~~~~l~~~~~~~~~~~--------------~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~ 66 (266)
T d1ijqa1 3 YLFFTNR--HEVRKMTLDRSEYTSLIPN--------------LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS 66 (266)
T ss_dssp EEEEECB--SSEEEEETTSCCCEEEECS--------------CSSEEEEEEETTTTEEEEEETTTTEEEEEEC-------
T ss_pred EEEEECC--CeEEEEECCCCcceeeeCC--------------CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCc
Confidence 4677774 5799999998765555332 34788999999899999999999999999886522
Q ss_pred -EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCC
Q 001380 691 -VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLN 769 (1089)
Q Consensus 691 -v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~ 769 (1089)
.+++... .+..|.+||+|+.++.||+++.+.++|.++++.+.....+..
T Consensus 67 ~~~~~~~~----------------~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~-------------- 116 (266)
T d1ijqa1 67 SYDTVISR----------------DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-------------- 116 (266)
T ss_dssp -CEEEECS----------------SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE--------------
T ss_pred ceEEEEeC----------------CCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEc--------------
Confidence 2233221 256899999999999999999999999999998877665542
Q ss_pred ccccCCceEEEcCCCCEEEEEeCCC-CeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccC-
Q 001380 770 TSFAQPSGISLSPDFMEIYVADSES-SSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKN- 847 (1089)
Q Consensus 770 ~~~~~P~glav~~~g~~lyvad~~~-~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~- 847 (1089)
....+|.+|++++..+.||+++.+. ++|.+.++++.....+... .+..|.|+++|+.
T Consensus 117 ~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~---------------------~~~~p~gl~iD~~~ 175 (266)
T d1ijqa1 117 ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE---------------------NIQWPNGITLDLLS 175 (266)
T ss_dssp CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS---------------------SCSCEEEEEEETTT
T ss_pred CCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccccc---------------------ccceeeEEEeeccc
Confidence 2346799999999777999999765 5899999997776665431 1568999999975
Q ss_pred CcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 848 GQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 848 G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
++|||+|...++|.+++.+|....++.... ..+.+|.||+++ ++.||++|..+++|.++++.+.
T Consensus 176 ~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~-----------~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g 239 (266)
T d1ijqa1 176 GRLYWVDSKLHSISSIDVNGGNRKTILEDE-----------KRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 239 (266)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEEECT-----------TTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred cEEEEecCCcCEEEEEECCCCCEEEEEeCC-----------CcccccEEEEEE-CCEEEEEECCCCeEEEEECCCC
Confidence 579999999999999999887666665321 146789999999 5789999999999999998765
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.84 E-value=5.6e-19 Score=189.94 Aligned_cols=234 Identities=18% Similarity=0.246 Sum_probs=182.6
Q ss_pred eEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEE
Q 001380 614 RLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRT 693 (1089)
Q Consensus 614 ~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~ 693 (1089)
.|+++.. +.|.++..++......... .. -......+.||++|..++.||++|...+.|++++++++..++
T Consensus 3 fLl~s~~--~~I~~~~ld~~~~~~~~~~-~~-------~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~ 72 (263)
T d1npea_ 3 HLLFAQT--GKIERLPLERNTMKKTEAK-AF-------LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT 72 (263)
T ss_dssp EEEEEEE--EEEEEEEESSSCBCGGGCE-EE-------EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE
T ss_pred EEEEeCC--CeEEEEECCCccccccccc-cc-------cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEE
Confidence 4666665 6888888776542210000 00 000012467899999989999999999999999999888888
Q ss_pred EecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCcccc
Q 001380 694 LAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFA 773 (1089)
Q Consensus 694 ~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~ 773 (1089)
+...+ +..|.+||+|..++.||+++...++|.++++.+.....+.. ..+.
T Consensus 73 v~~~~----------------~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~--------------~~l~ 122 (263)
T d1npea_ 73 IIRQD----------------LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD--------------TGLV 122 (263)
T ss_dssp EECTT----------------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------------SSCS
T ss_pred EEEec----------------cccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEec--------------cccc
Confidence 76433 45899999999888999999999999999998776655542 2356
Q ss_pred CCceEEEcCCCCEEEEEeCCCC--eEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccC-CcE
Q 001380 774 QPSGISLSPDFMEIYVADSESS--SIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKN-GQI 850 (1089)
Q Consensus 774 ~P~glav~~~g~~lyvad~~~~--~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~-G~l 850 (1089)
+|.+|++||..+.||+++.+.+ +|.+.++++.....+... .+..|.|+++|+. +.|
T Consensus 123 ~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~---------------------~~~~P~glaiD~~~~~l 181 (263)
T d1npea_ 123 NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQD---------------------NLGLPNGLTFDAFSSQL 181 (263)
T ss_dssp SEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECT---------------------TCSCEEEEEEETTTTEE
T ss_pred CCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeee---------------------cccccceEEEeecCcEE
Confidence 7999999998889999997644 699999987665555321 1568999999965 579
Q ss_pred EEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 851 YVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 851 yVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
||+|...++|.+++.+++.+.++.. .+..|.||+++ ++.||++|+++++|.++++.+.
T Consensus 182 Yw~d~~~~~I~~~~~~g~~~~~v~~--------------~~~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g 239 (263)
T d1npea_ 182 CWVDAGTHRAECLNPAQPGRRKVLE--------------GLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAIS 239 (263)
T ss_dssp EEEETTTTEEEEEETTEEEEEEEEE--------------CCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTT
T ss_pred EEEeCCCCEEEEEECCCCCeEEEEC--------------CCCCcEEEEEE-CCEEEEEECCCCEEEEEECCCC
Confidence 9999999999999999888877753 36779999998 5789999999999999999876
|
| >d1qq5a_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Xanthobacter autotrophicus [TaxId: 280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: HAD-related domain: L-2-Haloacid dehalogenase, HAD species: Xanthobacter autotrophicus [TaxId: 280]
Probab=99.84 E-value=2.4e-20 Score=199.03 Aligned_cols=129 Identities=26% Similarity=0.371 Sum_probs=113.9
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEE
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIV 244 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~ 244 (1089)
.++|++.++|+.|+ ++.++++||+....+...++.+++. .+||.++++++++..||+|++|+.+++++|++|++|||
T Consensus 93 ~~~~~~~~~L~~l~--~~~~~v~s~~~~~~~~~~~~~~~~~-~~fd~v~~s~~~~~~KP~p~~f~~a~~~lg~~p~e~l~ 169 (245)
T d1qq5a_ 93 TPYPDAAQCLAELA--PLKRAILSNGAPDMLQALVANAGLT-DSFDAVISVDAKRVFKPHPDSYALVEEVLGVTPAEVLF 169 (245)
T ss_dssp CBCTTHHHHHHHHT--TSEEEEEESSCHHHHHHHHHHTTCG-GGCSEEEEGGGGTCCTTSHHHHHHHHHHHCCCGGGEEE
T ss_pred ccchhhhHHHHHHh--hhceeEEeccchHHHHHHHhhcccc-cccccccccccccccCccHHHHHHHHHHhCCChhhEEE
Confidence 68999999999886 6899999999999999999999996 99999999999999999999999999999999999999
Q ss_pred EcCChhhHHHHHHcCCeEEEEcCCCCH-----------------------HHHhhcCCcEEecCcccCCHHHHHhcc
Q 001380 245 IEDALAGVQAAKAAQMRCIAVTTTLSE-----------------------ERLKEASPSLIRKEIGSVSLNDILTGG 298 (1089)
Q Consensus 245 VGD~~~Di~aA~~aG~~~i~V~~g~~~-----------------------~~l~~~~~d~vi~dl~el~i~~ll~~~ 298 (1089)
|||+.+||.+|+++||++|+|++.... .+.....||+++.++.|| ..++.++
T Consensus 170 VgD~~~di~~A~~aG~~tv~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~~l~el--~~lv~~~ 244 (245)
T d1qq5a_ 170 VSSNGFDVGGAKNFGFSVARVARLSQEALARELVSGTIAPLTMFKALRMREETYAEAPDFVVPALGDL--PRLVRGM 244 (245)
T ss_dssp EESCHHHHHHHHHHTCEEEEECCSCHHHHHHHTTSSSCCHHHHHHHHHSSCCTTSCCCSEEESSGGGH--HHHHHHH
T ss_pred EeCCHHHHHHHHHcCCeEEEEcCCCcccccccccccccccchhhhhhhhhhhhccCCCCEEECCHHHH--HHHHHhh
Confidence 999999999999999999999864211 111124699999999999 7777653
|
| >d1zs9a1 c.108.1.22 (A:4-256) E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Enolase-phosphatase E1 domain: E-1 enzyme species: Human(Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=1.2e-20 Score=201.68 Aligned_cols=126 Identities=12% Similarity=0.115 Sum_probs=109.0
Q ss_pred CCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEE-cCCccCCCCCHHHHHHHHHHcCCCCCc
Q 001380 163 SGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVS-ADAFENLKPAPDIFLSASKILNVPTSE 241 (1089)
Q Consensus 163 ~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~-~~~~~~~KP~~~~~~~~l~~lgv~p~~ 241 (1089)
...++||+.++|+.|+++|++++|+||+.....+..++..++. .+++.... .++....||+|.+|+.+++++|++|++
T Consensus 125 ~~~~~pg~~e~l~~L~~~g~~l~i~Tn~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~KP~p~~~~~~~~~~~~~p~~ 203 (253)
T d1zs9a1 125 KAEFFADVVPAVRKWREAGMKVYIYSSGSVEAQKLLFGHSTEG-DILELVDGHFDTKIGHKVESESYRKIADSIGCSTNN 203 (253)
T ss_dssp CBCCCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHTBTTB-CCGGGCSEEECGGGCCTTCHHHHHHHHHHHTSCGGG
T ss_pred ccccCCCHHHHHHHHhhccCceeecCCCcHHHHHHHHHHcCcc-hhhhhcceeeccccccCCCcHHHHHHHHHhCCCcCc
Confidence 3478999999999999999999999999999999999999996 88875433 455677999999999999999999999
Q ss_pred EEEEcCChhhHHHHHHcCCeEEEEcCC-CCHHHHhhcCCcEEecCcccC
Q 001380 242 CIVIEDALAGVQAAKAAQMRCIAVTTT-LSEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 242 ~v~VGD~~~Di~aA~~aG~~~i~V~~g-~~~~~l~~~~~d~vi~dl~el 289 (1089)
|+||||+.+|+.+|+++||++++|.+. ..........+++++.+|.||
T Consensus 204 ~l~vgD~~~dv~aA~~aG~~ti~v~r~g~~~~~~~~~~~~~~i~sl~EL 252 (253)
T d1zs9a1 204 ILFLTDVTREASAAEEADVHVAVVVRPGNAGLTDDEKTYYSLITSFSEL 252 (253)
T ss_dssp EEEEESCHHHHHHHHHTTCEEEEECCTTCCCCCHHHHHHSCEESSGGGC
T ss_pred EEEEeCCHHHHHHHHHcCCEEEEEeCCCCCCCchhhcCCCcEECChHHh
Confidence 999999999999999999999999864 333333344668899999887
|
| >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.83 E-value=1.5e-20 Score=189.81 Aligned_cols=139 Identities=22% Similarity=0.422 Sum_probs=117.7
Q ss_pred CCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcH
Q 001380 424 RKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDL 503 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~ 503 (1089)
...+.++|+|+++ +++|+.++| ++++||+|||+||++||++|+.+++.|+++++++.+.++.+|+|+++ .++.
T Consensus 30 ~~~~~~~Pdf~l~--d~~G~~v~L-~~~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d----~~~~ 102 (176)
T d1jfua_ 30 ASAPLKLPDLAFE--DADGKPKKL-SDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINID----TRDP 102 (176)
T ss_dssp CCSCCBCCCCEEE--CTTSCEEEG-GGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECC----CSCT
T ss_pred cCCCCcCCCeEEE--CCCcCEEeH-HHhCCCEEEEEeccCcccchHHHHHhhhhcccccccccccccccccc----ccch
Confidence 4567789999965 669999999 99999999999999999999999999999999999888999999863 2456
Q ss_pred HHHHHHHHHcCCccc-eeecCChhHHHH----hCCCceeEEEEECCCCcEEEEecCCCc--hhhHHHHHHHHH
Q 001380 504 EAIRNAVLRYGISHP-VVNDGDMNLWRE----LGVNSWPTFAVVGPNGKLLAQLAGEGH--RKDLDDLVEAAL 569 (1089)
Q Consensus 504 ~~~~~~~~~~~~~~~-v~~d~~~~l~~~----~~v~~~Pt~~lid~~G~i~~~~~G~~~--~~~l~~~l~~~l 569 (1089)
+.+++|+++++++++ ++.|.+..+++. |++.++|++||||++|+|++++.|+.. .+++.+.|+.++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~v~~~P~~~lID~~G~I~~~~~G~~~~~~~e~~~~l~al~ 175 (176)
T d1jfua_ 103 EKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAAT 175 (176)
T ss_dssp THHHHHHHHTTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHH
T ss_pred hhhhhhHhhhCCcceeeeecchhHHHHHHhhhccCCCCCeEEEEcCCCEEEEEEECCCCCChHHHHHHHHHhc
Confidence 789999999999974 778888877765 467889999999999999999999754 355556665544
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.81 E-value=3.8e-19 Score=197.72 Aligned_cols=214 Identities=8% Similarity=0.138 Sum_probs=161.9
Q ss_pred CcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC-
Q 001380 658 RPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG- 736 (1089)
Q Consensus 658 ~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~- 736 (1089)
...|+++|++|+ ||++|..+++|++++++++.+..+.... ...|.+|+++++| .|||++.+
T Consensus 41 ~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~~~~~----------------~~~p~gla~~~dG-~l~va~~~~ 102 (319)
T d2dg1a1 41 QLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRPFVSH----------------KANPAAIKIHKDG-RLFVCYLGD 102 (319)
T ss_dssp CEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECS----------------SSSEEEEEECTTS-CEEEEECTT
T ss_pred CcEeCEECCCCC-EEEEECCCCEEEEEECCCCeEEEEEeCC----------------CCCeeEEEECCCC-CEEEEecCC
Confidence 458999999998 9999999999999999887655543211 1269999999988 89999865
Q ss_pred ---CcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCC------CeEEEEEcCCCCe
Q 001380 737 ---QHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSES------SSIRALNLKTGGS 807 (1089)
Q Consensus 737 ---~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~------~~I~~~~~~~~~~ 807 (1089)
...|..++..++.+..+.... .....|++++++++| ++|++|... +.+++++++++.+
T Consensus 103 ~~~~~~i~~~~~~~~~~~~~~~~~------------~~~~~~nd~~~d~~G-~l~vtd~~~~~~~~~g~v~~~~~dg~~~ 169 (319)
T d2dg1a1 103 FKSTGGIFAATENGDNLQDIIEDL------------STAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTV 169 (319)
T ss_dssp SSSCCEEEEECTTSCSCEEEECSS------------SSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCE
T ss_pred CccceeEEEEcCCCceeeeeccCC------------CcccCCcceeEEecc-ceeecccccccccCcceeEEEeccccee
Confidence 457888888877766655321 234568999999999 899999764 4588888887666
Q ss_pred EEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEEEeCCCCEEEEEeCC--CCeEEEEeccCCCCCCCC
Q 001380 808 RLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADSYNHKIKKLDPA--SNRVSTLAGIGKAGFKDG 884 (1089)
Q Consensus 808 ~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~~n~~I~~~d~~--~~~v~t~~g~g~~g~~~g 884 (1089)
..+..+ +..|.||+++++|+ |||+|+.+++|.+|+.+ +...........
T Consensus 170 ~~~~~~----------------------~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~------ 221 (319)
T d2dg1a1 170 TPIIQN----------------------ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIP------ 221 (319)
T ss_dssp EEEEEE----------------------ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEE------
T ss_pred EEEeec----------------------cceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceee------
Confidence 555331 56899999999985 99999999999999753 333332221100
Q ss_pred cccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCCCceEEEEeec
Q 001380 885 AALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKEEPELQTLELK 933 (1089)
Q Consensus 885 ~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~~~~~~~l~~~ 933 (1089)
........|.||++|.+|+||||+..+++|.+|+++++ .+.++.+.
T Consensus 222 -~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~--~l~~i~~P 267 (319)
T d2dg1a1 222 -YYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGY--PIGQILIP 267 (319)
T ss_dssp -EECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSC--EEEEEECT
T ss_pred -eccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCCc--EEEEEeCC
Confidence 00113345999999999999999999999999999887 67777643
|
| >d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Amphibacillus xylanus [TaxId: 1449]
Probab=99.81 E-value=7.6e-20 Score=181.47 Aligned_cols=138 Identities=19% Similarity=0.134 Sum_probs=110.8
Q ss_pred CCCCCCCCCccccC--CCCCceeecccccCCCEEEEEEecC-CCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChh
Q 001380 425 KTTPIVPEFPAKLD--WLNTAPLQFRRDLKGKVVVLDFWTY-CCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEK 501 (1089)
Q Consensus 425 ~~g~~~P~f~~~~~--~~~g~~~~l~~~~~gk~vll~Fwa~-wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~ 501 (1089)
-+|+++|+|+++.. ..++.+++| ++++||++||+||.. ||++|..+++.|++++++|++.++++|+||. +
T Consensus 2 lvG~~aP~F~l~~~~~g~~~~~vsl-sd~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~IS~------D 74 (166)
T d1we0a1 2 LIGTEVQPFRAQAFQSGKDFFEVTE-ADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVST------D 74 (166)
T ss_dssp CTTCBCCCCEEEEECSSSCCEEEET-TTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEES------S
T ss_pred CCCCcCCCCEEeeecCCcceeEeeH-HHhCCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccceEEEeccc------c
Confidence 37999999997531 124457999 999999999999965 9999999999999999999999999999986 3
Q ss_pred cHHHHHHHH----HHcCCccceeecCChhHHHHhCCC------ceeEEEEECCCCcEEEEecCCC----chhhHHHHHHH
Q 001380 502 DLEAIRNAV----LRYGISHPVVNDGDMNLWRELGVN------SWPTFAVVGPNGKLLAQLAGEG----HRKDLDDLVEA 567 (1089)
Q Consensus 502 ~~~~~~~~~----~~~~~~~~v~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~G~~----~~~~l~~~l~~ 567 (1089)
+.+..++|. ..++++||++.|++.+++++||+. ..|++||||++|+|++.+.+.. +.+++.+.|+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~fpll~D~~~~v~~~ygv~~~~~~~~~r~tfvID~~G~I~~~~i~~~~~~r~~~eil~~lka 154 (166)
T d1we0a1 75 THFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKA 154 (166)
T ss_dssp CHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHH
T ss_pred cHHHHHHHhhhhhhhcccccccccCcccHHHHHhCCCccccCcccceEEEECCCCcEEEEEEcCCCCCCCHHHHHHHHHh
Confidence 444444444 456899999999999999999984 5788999999999999865543 34555555554
Q ss_pred HH
Q 001380 568 AL 569 (1089)
Q Consensus 568 ~l 569 (1089)
+-
T Consensus 155 l~ 156 (166)
T d1we0a1 155 AQ 156 (166)
T ss_dssp HH
T ss_pred cc
Confidence 33
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.81 E-value=3.1e-18 Score=188.82 Aligned_cols=242 Identities=14% Similarity=0.166 Sum_probs=179.7
Q ss_pred CCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCE
Q 001380 601 KFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHA 680 (1089)
Q Consensus 601 ~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~ 680 (1089)
.+|.++|+++ +|+|||+|..+++|++++++|+........ ..|.+++++++|+ +||++..++.
T Consensus 28 ~~~e~iAv~p-dG~l~vt~~~~~~I~~i~p~g~~~~~~~~~---------------~~~~gla~~~dG~-l~v~~~~~~~ 90 (302)
T d2p4oa1 28 TFLENLASAP-DGTIFVTNHEVGEIVSITPDGNQQIHATVE---------------GKVSGLAFTSNGD-LVATGWNADS 90 (302)
T ss_dssp CCEEEEEECT-TSCEEEEETTTTEEEEECTTCCEEEEEECS---------------SEEEEEEECTTSC-EEEEEECTTS
T ss_pred CCcCCEEECC-CCCEEEEeCCCCEEEEEeCCCCEEEEEcCC---------------CCcceEEEcCCCC-eEEEecCCce
Confidence 3688999997 899999999999999999999876544332 2689999999999 9999988888
Q ss_pred EEEEECC--CCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCc
Q 001380 681 LREIDFV--NDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGY 758 (1089)
Q Consensus 681 I~~~d~~--~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~ 758 (1089)
+.+++.. .+..+.+..... ...|++++++++| .+|+++..++.+|++++.++....+.....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~---------------~~~~n~i~~~~~g-~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~ 154 (302)
T d2p4oa1 91 IPVVSLVKSDGTVETLLTLPD---------------AIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPM 154 (302)
T ss_dssp CEEEEEECTTSCEEEEEECTT---------------CSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECGG
T ss_pred EEEEEecccccceeeccccCC---------------ccccceeEEccCC-CEEeeccccccceeeeccCCcceeEecCCc
Confidence 8777654 355555553221 2478999999987 999999999999999999988776654332
Q ss_pred cccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccC
Q 001380 759 ERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQH 838 (1089)
Q Consensus 759 ~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~ 838 (1089)
.... .....+..|.||+.+. +.+|++++.+++|++++.++...... .........
T Consensus 155 ~~~~----~~~~~~~~~ngi~~~~--~~l~~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~~~ 209 (302)
T d2p4oa1 155 LARS----NSESVFPAANGLKRFG--NFLYVSNTEKMLLLRIPVDSTDKPGE-------------------PEIFVEQTN 209 (302)
T ss_dssp GSCS----STTCCSCSEEEEEEET--TEEEEEETTTTEEEEEEBCTTSCBCC-------------------CEEEEESCC
T ss_pred ccee----eccCcccccccccccC--CceeeecCCCCeEEeccccccccccc-------------------cccccCCCC
Confidence 2111 1124456788998875 49999999999999999875432100 000111346
Q ss_pred ceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEcc---CC-cEEEEECCC
Q 001380 839 PLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQ---NG-NLFIADTNN 912 (1089)
Q Consensus 839 P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~---~G-~lyVad~~n 912 (1089)
|.|+++|++|++||++..+++|.+++++++ ...+... ...+..|++++++. |+ .|||+...+
T Consensus 210 pdgia~d~dG~l~va~~~~~~V~~i~p~G~-~~~~~~~-----------~~~~~~pt~vafg~~~~D~~~Lyvtt~~g 275 (302)
T d2p4oa1 210 IDDFAFDVEGNLYGATHIYNSVVRIAPDRS-TTIIAQA-----------EQGVIGSTAVAFGQTEGDCTAIYVVTNGG 275 (302)
T ss_dssp CSSEEEBTTCCEEEECBTTCCEEEECTTCC-EEEEECG-----------GGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred CcceEECCCCCEEEEEcCCCcEEEECCCCC-EEEEEec-----------CCCCCCceEEEEcCCCCCCCEEEEECCCC
Confidence 899999999999999999999999999865 4444321 11467799999953 44 499987553
|
| >d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Bacterioferritin comigratory protein species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=99.80 E-value=5.1e-20 Score=182.86 Aligned_cols=138 Identities=14% Similarity=0.207 Sum_probs=117.8
Q ss_pred CCCCCCCCCCccccCCCCCceeeccccc--CCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCCh
Q 001380 424 RKTTPIVPEFPAKLDWLNTAPLQFRRDL--KGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNE 500 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~~~~l~~~~--~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~ 500 (1089)
..+|+++|+|++ .+.+|+.++| +++ +||++||+|| ++||++|..+++.++++++++++.++.+|+|+.
T Consensus 2 i~vG~~aPdF~L--~~~~G~~~~L-sd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~------ 72 (160)
T d2cx4a1 2 VELGEKAPDFTL--PNQDFEPVNL-YEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISV------ 72 (160)
T ss_dssp CCTTSBCCCCEE--CCTTSCCEEH-HHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEES------
T ss_pred CcCCCCCcCeEe--ECCCCCEEeh-HHHhhCCCEEEEEecccccCCchhhhhhhhhcccccccccccccccccc------
Confidence 368999999995 4569999999 776 8999999999 899999999999999999999999999999974
Q ss_pred hcHHHHHHHHHHcCCccceeecCChhHHHHhCCC----------ceeEEEEECCCCcEEEEecCCC--chhhHHHHHHHH
Q 001380 501 KDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVN----------SWPTFAVVGPNGKLLAQLAGEG--HRKDLDDLVEAA 568 (1089)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~----------~~Pt~~lid~~G~i~~~~~G~~--~~~~l~~~l~~~ 568 (1089)
++++..+++.++++++|+++.|.+..+++.||+. ..|++||||++|+|++++.+.. ...++++.++++
T Consensus 73 d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~flId~~G~I~~~~~~~~~~~~~~~~eil~~l 152 (160)
T d2cx4a1 73 DSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREA 152 (160)
T ss_dssp SCHHHHHHHHHHHTCSSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSSTTCCCCHHHHHHHH
T ss_pred cchhhhhhhcccceeeEEEeecCCcchHHHcCccccccccccccceeeEEEEcCCCEEEEEEEeCCCCCCCCHHHHHHHH
Confidence 5778899999999999999999999999999983 4689999999999999976543 233455555544
Q ss_pred HH
Q 001380 569 LL 570 (1089)
Q Consensus 569 l~ 570 (1089)
.+
T Consensus 153 ~~ 154 (160)
T d2cx4a1 153 NK 154 (160)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Crithidia fasciculata [TaxId: 5656]
Probab=99.80 E-value=6.3e-20 Score=183.20 Aligned_cols=126 Identities=19% Similarity=0.239 Sum_probs=107.3
Q ss_pred CCCCCCCCCCccc--cCCCCCceeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCCh
Q 001380 424 RKTTPIVPEFPAK--LDWLNTAPLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNE 500 (1089)
Q Consensus 424 ~~~g~~~P~f~~~--~~~~~g~~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~ 500 (1089)
.++|++||+|++. +.+.+|++++| ++++||+|||+|| ++||++|..+++.|++++++|++.++.+++|+.
T Consensus 3 ~kvG~~APdF~~~~~l~d~~g~~vsL-sd~~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~is~------ 75 (167)
T d1e2ya_ 3 AKLNHPAPEFDDMALMPNGTFKKVSL-SSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISCSC------ 75 (167)
T ss_dssp CCTTSBCCCCEEEEECSSSCEEEEEG-GGGTTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEEEES------
T ss_pred ccCCCCCCCCcccccccCCCCcEEeH-HHHCCCeEEEEEcccccccccchhhHHHHHHHHHhhcCceEEEeecC------
Confidence 5799999999853 45668999999 9999999999999 999999999999999999999999999999986
Q ss_pred hcHHHHHHHHHHc-------CCccceeecCChhHHHHhCCC------ceeEEEEECCCCcEEEEecCCC
Q 001380 501 KDLEAIRNAVLRY-------GISHPVVNDGDMNLWRELGVN------SWPTFAVVGPNGKLLAQLAGEG 556 (1089)
Q Consensus 501 ~~~~~~~~~~~~~-------~~~~~v~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~G~~ 556 (1089)
++.+...++.+.+ .++++++.|.+..+++.|+|. .+|++||||++|+|++.+.+..
T Consensus 76 d~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~y~v~~~~~g~~~r~tfvID~~G~Ir~~~~~~~ 144 (167)
T d1e2ya_ 76 DSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDEDSGVAYRGVFIIDPNGKLRQIIINDM 144 (167)
T ss_dssp SCHHHHHHHHHSCGGGTCCCCCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECT
T ss_pred CcHHhHHHHHhhHHHhcccccccccccccchhHHHHHcCCCcccCCCceeEEEEECCCCEEEEEEEcCC
Confidence 3444444454432 478899999999999999983 4789999999999998865543
|
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Probab=99.80 E-value=4.6e-20 Score=179.41 Aligned_cols=118 Identities=20% Similarity=0.276 Sum_probs=98.4
Q ss_pred CCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcC-CCCEEEEEEeCCCCCChhcH
Q 001380 425 KTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYK-DMPFTVVGVHSAKFDNEKDL 503 (1089)
Q Consensus 425 ~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~-~~~v~vi~v~~~~~~~~~~~ 503 (1089)
.+++.+|+|+..+. +|++++| ++++||+|||+|||+||++|+.++|.|++++++|+ +.++.+|+|+. +++.
T Consensus 3 ~~~k~~P~~~~~~~--~~~~v~l-~~~~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~-----d~~~ 74 (144)
T d1o73a_ 3 GLAKYLPGATNLLS--KSGEVSL-GSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISW-----DENE 74 (144)
T ss_dssp GGGGTSCTTCCBBC--TTSCBCS-GGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEEC-----CSSH
T ss_pred CcccCCCCceeecc--CCCEEeH-HHhCCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEec-----chhH
Confidence 46789999996543 7888999 99999999999999999999999999999999996 46899999975 5677
Q ss_pred HHHHHHHHHcCCccceeecC---ChhHHHHhCCCceeEEEEECCC-CcEEEE
Q 001380 504 EAIRNAVLRYGISHPVVNDG---DMNLWRELGVNSWPTFAVVGPN-GKLLAQ 551 (1089)
Q Consensus 504 ~~~~~~~~~~~~~~~v~~d~---~~~l~~~~~v~~~Pt~~lid~~-G~i~~~ 551 (1089)
+.+++++++.+.. .+..|. ..++++.|+|.++|++||||++ |+|+..
T Consensus 75 ~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~y~v~~~Pt~~lID~~~G~Ii~~ 125 (144)
T d1o73a_ 75 SDFHDYYGKMPWL-ALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGT 125 (144)
T ss_dssp HHHHHHHTTCSSE-ECCTTCHHHHHHHHHHHTCCSSSEEEEEETTTCCEEES
T ss_pred HHHHHHHHhcccc-ceeeeccchHHHHHHHcCCCcCCEEEEEECCCCEEEee
Confidence 8888888876542 222232 3468999999999999999997 888864
|
| >d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.80 E-value=1.2e-19 Score=181.63 Aligned_cols=123 Identities=17% Similarity=0.187 Sum_probs=106.2
Q ss_pred CCCCCCCCCCccccCCCCC---------------ceeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCE
Q 001380 424 RKTTPIVPEFPAKLDWLNT---------------APLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPF 487 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g---------------~~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v 487 (1089)
+.+|+++|+|+++.. .| +.++| ++++||++||+|| +.||+.|..+++.|++++++|++.|+
T Consensus 3 l~vGd~aPdF~l~~~--~g~~~~~~~~~~~~~~~~~~~l-~d~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~ 79 (169)
T d2bmxa1 3 LTIGDQFPAYQLTAL--IGGDLSKVDAKQPGDYFTTITS-DEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDA 79 (169)
T ss_dssp CCTTCBCCCCEEEEE--CSSCGGGSCCSSGGGGEEEEET-TSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTE
T ss_pred CCCCCCCCCCEEeec--cCCcccccccccccccccEeeH-HHHCCCeEEEEEecCCCCccccccccccccccccccccCc
Confidence 468999999996532 44 57888 9999999999999 99999999999999999999999999
Q ss_pred EEEEEeCCCCCChhcHHHHHHHHHHcC----CccceeecCChhHHHHhCC-----CceeEEEEECCCCcEEEEecCC
Q 001380 488 TVVGVHSAKFDNEKDLEAIRNAVLRYG----ISHPVVNDGDMNLWRELGV-----NSWPTFAVVGPNGKLLAQLAGE 555 (1089)
Q Consensus 488 ~vi~v~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~d~~~~l~~~~~v-----~~~Pt~~lid~~G~i~~~~~G~ 555 (1089)
++++|+. ++.....++.+.++ ++||++.|.+.+++++||| ...|++||||++|+|++.+.+.
T Consensus 80 ~vv~is~------d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~ygv~~~~~~~~r~~fvID~~G~I~~~~~~~ 150 (169)
T d2bmxa1 80 QILGVSI------DSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGVLNADGVADRVTFIVDPNNEIQFVSATA 150 (169)
T ss_dssp EEEEEES------SCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTCBCTTSSBCEEEEEECTTSBEEEEEEEC
T ss_pred ceeeccc------cchhhhhhhcccccccccceEEEEeccHHHHHHHcCCCccCCccceeEEEEcCCCEEEEEEEcC
Confidence 9999986 44555555666554 8999999999999999998 6789999999999999986544
|
| >d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Putative peroxiredoxin Rv2238c/MT2298 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.80 E-value=1.6e-19 Score=177.66 Aligned_cols=140 Identities=16% Similarity=0.099 Sum_probs=112.4
Q ss_pred CCCCCCCCCCccccCCCCCceeecccccCCC-EEEE-EEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChh
Q 001380 424 RKTTPIVPEFPAKLDWLNTAPLQFRRDLKGK-VVVL-DFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEK 501 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk-~vll-~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~ 501 (1089)
+++|+++|+|+++ +.+|++++| ++++|| ++|| +||++|||+|+.+++.|+++++++++.++.+++|+. +
T Consensus 2 l~vG~~aPdF~l~--d~~G~~~sl-sd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi~vs~------d 72 (153)
T d1xvwa1 2 LNVGATAPDFTLR--DQNQQLVTL-RGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISV------G 72 (153)
T ss_dssp CCTTSBCCCCEEE--CTTSCEEEG-GGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEES------C
T ss_pred CCCcCCCcCeEEE--CCCCCEEeH-HHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhcccccccccccc------h
Confidence 4689999999965 569999999 999995 4444 556999999999999999999999999999999974 6
Q ss_pred cHHHHHHHHHHcCCccceeecC--ChhHHHHhCCC------ceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHHh
Q 001380 502 DLEAIRNAVLRYGISHPVVNDG--DMNLWRELGVN------SWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFY 572 (1089)
Q Consensus 502 ~~~~~~~~~~~~~~~~~v~~d~--~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~~ 572 (1089)
+.+.+++|.++++++|+++.|. +..+++.||+. ..|++||||++|+|++.+.+..........+.++|+.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ygv~~~~~g~~~r~tfvID~~G~I~~~~~~~~~~~~~~~~~~~~L~aL 151 (153)
T d1xvwa1 73 PPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAAL 151 (153)
T ss_dssp CHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHHT
T ss_pred hhhHHHHHhhhhccceeEEecccccchhHHHhhhhhhccCceeeeEEEECCCCEEEEEEEeCCCcccCHHHHHHHHHhh
Confidence 7889999999999999988664 67899999984 34689999999999988765432222223345555443
|
| >d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.79 E-value=1.7e-19 Score=182.66 Aligned_cols=149 Identities=15% Similarity=0.178 Sum_probs=118.7
Q ss_pred CCCCCCCCCCccc--cCCCCCceeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCCh
Q 001380 424 RKTTPIVPEFPAK--LDWLNTAPLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNE 500 (1089)
Q Consensus 424 ~~~g~~~P~f~~~--~~~~~g~~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~ 500 (1089)
...+++||+|++. +.+.+|++++| ++++||+|||+|| +.||+.|..|++.|++++++|++.+++||+||.
T Consensus 3 ae~~~PAPdFtl~a~l~d~~g~~vsL-sd~~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~~VlgIS~------ 75 (194)
T d1uula_ 3 AEDLHPAPDFNETALMPNGTFKKVAL-TSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSM------ 75 (194)
T ss_dssp CCTTSBCCCCEEEEECTTSCEEEEEG-GGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEES------
T ss_pred cccCCCCCCCcccccccCCCCcEEeh-HHhCCCeEEEEEEeCCccccchhhhhHHHhhhhhhccCceEEEEEec------
Confidence 4578999999954 44568889999 9999999999999 999999999999999999999999999999986
Q ss_pred hcHHHHHHHHHHc-------CCccceeecCChhHHHHhCC------CceeEEEEECCCCcEEEEecCCC----chhhHHH
Q 001380 501 KDLEAIRNAVLRY-------GISHPVVNDGDMNLWRELGV------NSWPTFAVVGPNGKLLAQLAGEG----HRKDLDD 563 (1089)
Q Consensus 501 ~~~~~~~~~~~~~-------~~~~~v~~d~~~~l~~~~~v------~~~Pt~~lid~~G~i~~~~~G~~----~~~~l~~ 563 (1089)
++.+..++|.+.+ +++||++.|.+++++++||| ...|++||||++|+|++.+.... +.+++.+
T Consensus 76 Ds~~s~~~~~~~~~~~~~~~~l~fpllsD~~~~v~~~ygv~~~~~~~~~R~tfvID~~G~I~~~~~~~~~~~r~~~E~Lr 155 (194)
T d1uula_ 76 DSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALR 155 (194)
T ss_dssp SCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHH
T ss_pred CchhhhhhhhhhhhhhccccCCCcceeeCCcchHHHHcCCeeccCCceEEEEEEECCCCeEEEEEEecCCCCcCHHHHHH
Confidence 4555555665543 68899999999999999999 35789999999999999865433 4555555
Q ss_pred HHHHHHHHhcccccccC
Q 001380 564 LVEAALLFYGKKKLLDN 580 (1089)
Q Consensus 564 ~l~~~l~~~~~~~~l~~ 580 (1089)
.|+. |+.....|.+..
T Consensus 156 ~l~a-lQ~~~~~~~~cp 171 (194)
T d1uula_ 156 LVKA-FQFVEKHGEVCP 171 (194)
T ss_dssp HHHH-HHHHHHHSCBBC
T ss_pred HHHH-hhhHhhcCCCcC
Confidence 5544 333334455443
|
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Probab=99.79 E-value=7.8e-20 Score=177.33 Aligned_cols=112 Identities=19% Similarity=0.213 Sum_probs=94.5
Q ss_pred CccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCC-CCEEEEEEeCCCCCChhcHHHHHHHHH
Q 001380 433 FPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD-MPFTVVGVHSAKFDNEKDLEAIRNAVL 511 (1089)
Q Consensus 433 f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~-~~v~vi~v~~~~~~~~~~~~~~~~~~~ 511 (1089)
|+..+.+-+|..+++ ++++||+|||+|||+||++|+.++|.|++++++|++ .+++||+|+. +++.++++++++
T Consensus 9 ~~~~~l~~~~~~v~l-s~l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~-----D~~~~~~~~~~~ 82 (144)
T d1i5ga_ 9 YSTNVLKGAAADIAL-PSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISW-----DESAEDFKDYYA 82 (144)
T ss_dssp SCSEEEETTEEEEEG-GGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEEC-----CSSHHHHHHHHT
T ss_pred CchhhccCCCCEeeH-HHcCCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEec-----cccHHHHHHHHH
Confidence 443333336678999 999999999999999999999999999999999986 4799999975 567889999999
Q ss_pred HcCCccceeecCC--hhHHHHhCCCceeEEEEECCC-CcEEE
Q 001380 512 RYGISHPVVNDGD--MNLWRELGVNSWPTFAVVGPN-GKLLA 550 (1089)
Q Consensus 512 ~~~~~~~v~~d~~--~~l~~~~~v~~~Pt~~lid~~-G~i~~ 550 (1089)
+++..++.+.|.+ ..+++.|+|.++|+++|||++ |+|+.
T Consensus 83 ~~~~~~~~~~d~~~~~~l~~~y~v~~iPt~~lid~~~G~vi~ 124 (144)
T d1i5ga_ 83 KMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIIT 124 (144)
T ss_dssp TCSSEECCTTCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEE
T ss_pred hCCCCceeeEChHHHHHHHHHCCCCCcCEEEEEeCCCCEEEe
Confidence 9998876665544 358899999999999999996 88874
|
| >d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin dot5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.77 E-value=3.8e-19 Score=174.89 Aligned_cols=141 Identities=12% Similarity=0.159 Sum_probs=116.1
Q ss_pred hccCCCCCCCCCCccccCCCCCceeeccccc--CCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCC
Q 001380 421 VENRKTTPIVPEFPAKLDWLNTAPLQFRRDL--KGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKF 497 (1089)
Q Consensus 421 ~~~~~~g~~~P~f~~~~~~~~g~~~~l~~~~--~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~ 497 (1089)
+..+.+|+++|+|++. +.+|+.++| +++ +|++||+.|| ++||++|..+++.|++++++|++. +.+++|+.
T Consensus 2 ~~~L~vG~~aP~f~L~--~~~g~~~~l-~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~-~~~~~is~--- 74 (156)
T d2a4va1 2 VNELEIGDPIPDLSLL--NEDNDSISL-KKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEY-AAVFGLSA--- 74 (156)
T ss_dssp TTCCCTTCBCCSCEEE--CTTSCEEEH-HHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTT-CEEEEEES---
T ss_pred CccCCCCCCCCCeEEE--CCCCCEEee-HHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhhc-cceeeecc---
Confidence 4567899999999954 569999999 887 5678888888 899999999999999999999864 66899974
Q ss_pred CChhcHHHHHHHHHHcCCccceeecCChhHHHHhCCCcee-----EEEEECCCCcEEEEecCCCchhhHHHHHHHHHHH
Q 001380 498 DNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWP-----TFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLF 571 (1089)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~P-----t~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~ 571 (1089)
++.+..++|.++++++||++.|++++++++||+...| .+++|+.+|++++++.+..........++++++.
T Consensus 75 ---d~~~~~~~f~~~~~l~f~~L~D~~~~v~~~ygv~~~~~~~~~r~~~i~~dg~i~~~~~~~~~~~~~~~~~~evl~~ 150 (156)
T d2a4va1 75 ---DSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIFVDGKLKFKRVKISPEVSVNDAKKEVLEV 150 (156)
T ss_dssp ---CCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEEETTEEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred ---chhhhHHhhhcccCccceeccchHHHHHHHcCCCccccCCeeEEEEEEECCeEEEEEEEeCCCCCcchHHHHHHHH
Confidence 6788899999999999999999999999999986555 2455558999999988876555555555555443
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.77 E-value=1.7e-17 Score=183.71 Aligned_cols=210 Identities=13% Similarity=0.174 Sum_probs=155.9
Q ss_pred cCCcceeEEeeCCCEEEEEECC-------CCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCC
Q 001380 656 FNRPQGLAYNAKKNLLYVADTE-------NHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINE 728 (1089)
Q Consensus 656 f~~P~gla~d~~g~~lyVaD~~-------n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~ 728 (1089)
|..|.|++++++|+ ||+++.. +++|.++|++++..+.+....... ....|.+|+++++|+
T Consensus 17 ~~g~EGpa~d~dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~------------~~g~P~Gl~~~~dg~ 83 (314)
T d1pjxa_ 17 IPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNG------------YGGIPAGCQCDRDAN 83 (314)
T ss_dssp CTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETT------------EECCEEEEEECSSSS
T ss_pred CCCCeEeEEeCCCC-EEEEECccccccccCCEEEEEECCCCcEEEEECCcccc------------CCCcceeEEEeCCCC
Confidence 66789999999999 9998765 468999999998887776322111 123699999999999
Q ss_pred EEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCC---------------
Q 001380 729 KVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSE--------------- 793 (1089)
Q Consensus 729 ~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~--------------- 793 (1089)
.+||++.. +.|.+++++++....+.... + ...+..|++++++++| +|||+|+.
T Consensus 84 ~l~vad~~-~~i~~~~~~g~~~~~~~~~~-~---------g~~~~~pndl~~d~~G-~lyvtd~~~~~~~~~~~~~~~~~ 151 (314)
T d1pjxa_ 84 QLFVADMR-LGLLVVQTDGTFEEIAKKDS-E---------GRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEK 151 (314)
T ss_dssp EEEEEETT-TEEEEEETTSCEEECCSBCT-T---------SCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSS
T ss_pred EEEEEECC-CeEEEEeCCCcEEEEEeccc-c---------ccccCCCcEEEECCCC-CEEEecCccCcccccccceeccC
Confidence 99999865 67999998877655443211 1 1346789999999998 99999864
Q ss_pred CCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCC-----cEEEEeCCCCEEEEEeCC-C
Q 001380 794 SSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNG-----QIYVADSYNHKIKKLDPA-S 867 (1089)
Q Consensus 794 ~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G-----~lyVaD~~n~~I~~~d~~-~ 867 (1089)
.++|+++++++. ...+.. .+..|.||++++++ .|||+|+.+++|.++|.+ .
T Consensus 152 ~G~v~~~~~dg~-~~~~~~----------------------~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~ 208 (314)
T d1pjxa_ 152 FGSIYCFTTDGQ-MIQVDT----------------------AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGP 208 (314)
T ss_dssp CEEEEEECTTSC-EEEEEE----------------------EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEET
T ss_pred CceEEEEeecCc-eeEeeC----------------------CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCc
Confidence 347888887643 333322 15679999998876 499999999999998753 3
Q ss_pred CeEEE---EeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 868 NRVST---LAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 868 ~~v~t---~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
+.+.. +..... .....|.||++|.+|+|||++..+++|.+|++++.
T Consensus 209 g~~~~~~~~~~~~~----------~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g 257 (314)
T d1pjxa_ 209 AKIENKKVWGHIPG----------THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG 257 (314)
T ss_dssp TEEEEEEEEEECCC----------CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB
T ss_pred cccceeeEEEEccc----------cccccceeeEEecCCcEEEEEcCCCEEEEEeCCCC
Confidence 33322 111100 02345999999999999999999999999999876
|
| >d1zd3a1 c.108.1.2 (A:2-224) Epoxide hydrolase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: YihX-like domain: Epoxide hydrolase, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=4.2e-19 Score=185.98 Aligned_cols=104 Identities=20% Similarity=0.189 Sum_probs=93.4
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChH----hHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCC
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRI----KVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTS 240 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~----~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~ 240 (1089)
.++||+.++|..|+++|++++++||.... ..+......++. .+||.++++++++..||+|++|+++++++|++|+
T Consensus 99 ~~~~~~~~~l~~L~~~~~~~~i~Tn~~~~~~~~~~~~~~~~~~~~-~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~ 177 (225)
T d1zd3a1 99 KINRPMLQAALMLRKKGFTTAILTNTWLDDRAERDGLAQLMCELK-MHFDFLIESCQVGMVKPEPQIYKFLLDTLKASPS 177 (225)
T ss_dssp EECHHHHHHHHHHHHTTCEEEEEECCCCCCSTTHHHHHHHHHHHH-TTSSEEEEHHHHTCCTTCHHHHHHHHHHHTCCGG
T ss_pred CCCccHHHHHHHHHhccCccccccccchhhHHHHHHHHhhhcChH-hhccEEEeccccccchhHHHHHHHHhhhcccCcc
Confidence 67999999999999999999999996443 334445566775 8999999999999999999999999999999999
Q ss_pred cEEEEcCChhhHHHHHHcCCeEEEEcCCC
Q 001380 241 ECIVIEDALAGVQAAKAAQMRCIAVTTTL 269 (1089)
Q Consensus 241 ~~v~VGD~~~Di~aA~~aG~~~i~V~~g~ 269 (1089)
+|+||||+..|+.+|+++||++|+|.++.
T Consensus 178 e~l~VgD~~~Di~~A~~~G~~ti~v~~~~ 206 (225)
T d1zd3a1 178 EVVFLDDIGANLKPARDLGMVTILVQDTD 206 (225)
T ss_dssp GEEEEESCHHHHHHHHHTTCEEEECSSHH
T ss_pred ceeEEecCHHHHHHHHHcCCEEEEECCcc
Confidence 99999999999999999999999998764
|
| >d1cr6a1 c.108.1.2 (A:4-225) Epoxide hydrolase, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: YihX-like domain: Epoxide hydrolase, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.76 E-value=1.8e-19 Score=189.04 Aligned_cols=110 Identities=18% Similarity=0.210 Sum_probs=98.3
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCC----hHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCC
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSAD----RIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTS 240 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~----~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~ 240 (1089)
.++|++.++|..|+++|++++++||+. ....+..+...++. .|||.++++++++..||+|++|+.+++++|++|+
T Consensus 97 ~~~~~~~~~L~~L~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~l~-~~fd~i~~s~~~~~~KP~p~~~~~~~~~~~v~p~ 175 (222)
T d1cr6a1 97 SINRPMLQAAIALKKKGFTTCIVTNNWLDDGDKRDSLAQMMCELS-QHFDFLIESCQVGMIKPEPQIYNFLLDTLKAKPN 175 (222)
T ss_dssp EECHHHHHHHHHHHHTTCEEEEEECCCCCCSSSHHHHHHHHHHHG-GGCSEEEEHHHHSCCTTCHHHHHHHHHHHTSCTT
T ss_pred CCCccHHHHHHHHHhcCCceEEeeccccccHHHHHHHHHHhcChH-hhhceeeehhhccCCCCChHHHHHHHHHhCCCcc
Confidence 689999999999999999999999843 34556667788996 9999999999999999999999999999999999
Q ss_pred cEEEEcCChhhHHHHHHcCCeEEEEcCCC-CHHHHh
Q 001380 241 ECIVIEDALAGVQAAKAAQMRCIAVTTTL-SEERLK 275 (1089)
Q Consensus 241 ~~v~VGD~~~Di~aA~~aG~~~i~V~~g~-~~~~l~ 275 (1089)
+||||||+..|+++|+++||++|+|.++. ..+++.
T Consensus 176 ~~l~IgD~~~Di~~A~~aG~~ti~V~~~~~~~~el~ 211 (222)
T d1cr6a1 176 EVVFLDDFGSNLKPARDMGMVTILVHNTASALRELE 211 (222)
T ss_dssp SEEEEESSSTTTHHHHHHTCEEEECCSSSHHHHHHH
T ss_pred eEEEEECCHHHHHHHHHcCCEEEEECCcchHHHHHH
Confidence 99999999999999999999999998875 344443
|
| >d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin reductase TsaA species: Helicobacter pylori [TaxId: 210]
Probab=99.75 E-value=1.8e-18 Score=172.34 Aligned_cols=144 Identities=19% Similarity=0.254 Sum_probs=111.9
Q ss_pred CCCCCCCCCccccCCCCC-----ceeecccccCCC-EEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCC
Q 001380 425 KTTPIVPEFPAKLDWLNT-----APLQFRRDLKGK-VVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKF 497 (1089)
Q Consensus 425 ~~g~~~P~f~~~~~~~~g-----~~~~l~~~~~gk-~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~ 497 (1089)
.+|++||||+++.. +| +.++| ++++|| +|||+|| +.||+.|..|++.+++.+++|++.++++|+||.
T Consensus 2 lVG~~APdF~l~~~--~g~~~~~~~~~L-sd~~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~Vvgis~--- 75 (170)
T d1zofa1 2 VVTKLAPDFKAPAV--LGNNEVDEHFEL-SKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSI--- 75 (170)
T ss_dssp CTTSBCCCCEEEEE--CTTSCEEEEEET-TTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEES---
T ss_pred CCCCcCCCcCcccc--cCCCccceEEEe-HHHcCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCCeeEecccc---
Confidence 47999999997544 55 46999 899886 8999999 999999999999999999999999999999986
Q ss_pred CChhcHHHHHHHHHHc-------CCccceeecCChhHHHHhCCC-----ceeEEEEECCCCcEEEEecCCCc-hhhHHHH
Q 001380 498 DNEKDLEAIRNAVLRY-------GISHPVVNDGDMNLWRELGVN-----SWPTFAVVGPNGKLLAQLAGEGH-RKDLDDL 564 (1089)
Q Consensus 498 ~~~~~~~~~~~~~~~~-------~~~~~v~~d~~~~l~~~~~v~-----~~Pt~~lid~~G~i~~~~~G~~~-~~~l~~~ 564 (1089)
++....++|.+++ +++|+++.|.+.++.++||+. ..|++||||++|+|++.+.+... ...+++.
T Consensus 76 ---d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~~~ygv~~~~~~~~r~tfvID~~G~I~~~~~~~~~~~~~~~ei 152 (170)
T d1zofa1 76 ---DSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEM 152 (170)
T ss_dssp ---SCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHH
T ss_pred ---cchhhHHHHHhhhhhcccccCcccccccccccHHHHHcCCCccccceeEEEEEEcCCCeEEEEEEeCCCCCCCHHHH
Confidence 4455555555554 688999999999999999984 67899999999999987644332 2234444
Q ss_pred HHH--HHHHhccccc
Q 001380 565 VEA--ALLFYGKKKL 577 (1089)
Q Consensus 565 l~~--~l~~~~~~~~ 577 (1089)
|+. .|++..+.|.
T Consensus 153 L~~l~aLq~~~~~~~ 167 (170)
T d1zofa1 153 LRMVDALLHFEEHGE 167 (170)
T ss_dssp HHHHHHHHHHHSSCC
T ss_pred HHHHHHhhhHHhcCC
Confidence 432 2444444344
|
| >d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin-3 (AOP-1, SP-22) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.75 E-value=1.6e-18 Score=170.49 Aligned_cols=121 Identities=17% Similarity=0.215 Sum_probs=104.9
Q ss_pred CCCCCCccc-cCCCCCceeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHH
Q 001380 428 PIVPEFPAK-LDWLNTAPLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEA 505 (1089)
Q Consensus 428 ~~~P~f~~~-~~~~~g~~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~ 505 (1089)
+.||+|+++ +.+-+|++++| ++++||+|||+|| +.||+.|..+++.+++++++|.+.++.+++||. ++...
T Consensus 1 ~~AP~F~l~~~~~~~~~~vsL-~d~~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vigIS~------d~~~~ 73 (158)
T d1zyea1 1 QHAPYFKGTAVVSGEFKEISL-DDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSV------DSHFS 73 (158)
T ss_dssp SBCCCCEEEEECSSSEEEEEG-GGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEES------SCHHH
T ss_pred CCCCCCccceeeCCCccEEeH-HHhCCCeEEEEEeehhcCCccccchhhHHHhHHHhhcCCceEEeccC------cCHHH
Confidence 469999965 33336678999 9999999999999 899999999999999999999999999999986 56667
Q ss_pred HHHHHHHc-------CCccceeecCChhHHHHhCCC------ceeEEEEECCCCcEEEEecCC
Q 001380 506 IRNAVLRY-------GISHPVVNDGDMNLWRELGVN------SWPTFAVVGPNGKLLAQLAGE 555 (1089)
Q Consensus 506 ~~~~~~~~-------~~~~~v~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~G~ 555 (1089)
.++|++.. +++||++.|.+..+++.||+. ..|++||||++|+|++.+.+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~~ygv~~~~~g~~~R~tfvID~~G~I~~~~i~~ 136 (158)
T d1zyea1 74 HLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVND 136 (158)
T ss_dssp HHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEEC
T ss_pred HHHHHhhhHhhccccccccccccccccHHHHHHHhccccCCccccEEEEECCCCEEEEEEEeC
Confidence 77777764 889999999999999999985 578999999999999886543
|
| >d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Magnesium-dependent phosphatase-1, Mdp1 domain: Magnesium-dependent phosphatase-1, Mdp1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.74 E-value=3.9e-19 Score=177.03 Aligned_cols=106 Identities=19% Similarity=0.204 Sum_probs=95.9
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCCh-HhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEE
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADR-IKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECI 243 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~-~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v 243 (1089)
.++||+.++|+.|+++|++++|+||+.. ...+..++.+++. .+|+.+.+. .||+++.|.++++++|++|++|+
T Consensus 46 ~l~pgv~e~L~~L~~~G~~~~v~S~~~~~~~~~~~l~~~~~~-~~~~~~~~~-----~kp~~~~~~~~~~~~~~~~~~~l 119 (164)
T d1u7pa_ 46 QLYPEVPEVLGRLQSLGVPVAAASRTSEIQGANQLLELFDLG-KYFIQREIY-----PGSKVTHFERLHHKTGVPFSQMV 119 (164)
T ss_dssp CCCTTHHHHHHHHHHTTCCEEEEECCSCHHHHHHHHHHTTCG-GGCSEEEES-----SSCHHHHHHHHHHHHCCCGGGEE
T ss_pred ccchHHHHHHHHHHHCCCcEEEEeccccchhhccchhccccc-ccceeeecc-----cCCChHHHHHHHHHhCCChHHEE
Confidence 7899999999999999999999998766 4567788999996 888887654 58999999999999999999999
Q ss_pred EEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhh
Q 001380 244 VIEDALAGVQAAKAAQMRCIAVTTTLSEERLKE 276 (1089)
Q Consensus 244 ~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~ 276 (1089)
||||+..|+++|+++||.+|+|.+|.+.+++++
T Consensus 120 ~igD~~~di~aA~~aG~~~i~v~~G~~~~~~~~ 152 (164)
T d1u7pa_ 120 FFDDENRNIIDVGRLGVTCIHIRDGMSLQTLTQ 152 (164)
T ss_dssp EEESCHHHHHHHHTTTCEEEECSSCCCHHHHHH
T ss_pred EEcCCHHHHHHHHHcCCEEEEECCCCChHHHHH
Confidence 999999999999999999999999987777665
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Probab=99.73 E-value=1.7e-18 Score=168.51 Aligned_cols=118 Identities=18% Similarity=0.280 Sum_probs=97.4
Q ss_pred CCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCC-CCEEEEEEeCCCCCChhcHH
Q 001380 426 TTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKD-MPFTVVGVHSAKFDNEKDLE 504 (1089)
Q Consensus 426 ~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~-~~v~vi~v~~~~~~~~~~~~ 504 (1089)
.++.+|+|++. +.+|+++++ ++++||+|||+||++||++|+.++|.|.+++++|.+ .++.+|+|+. +++.+
T Consensus 2 ~~k~~P~~~~~--~~~g~~v~l-~~l~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~-----d~~~~ 73 (144)
T d1o8xa_ 2 LDKYLPGIEKL--RRGDGEVEV-KSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTW-----DEEED 73 (144)
T ss_dssp GGGTSTTCCEE--EETTEEEEG-GGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEEC-----CCSHH
T ss_pred CCCCCCCcEeE--cCCCCEEeH-HHhCCCEEEEEeccccccccccccchhHHhhhhcccccccccccccc-----cccHH
Confidence 46789999965 448999999 999999999999999999999999999999999965 4799999975 45667
Q ss_pred HHHHHHHHcCC-cccee-ecCChhHHHHhCCCceeEEEEECCC-CcEEEE
Q 001380 505 AIRNAVLRYGI-SHPVV-NDGDMNLWRELGVNSWPTFAVVGPN-GKLLAQ 551 (1089)
Q Consensus 505 ~~~~~~~~~~~-~~~v~-~d~~~~l~~~~~v~~~Pt~~lid~~-G~i~~~ 551 (1089)
.++.+...... .+++. .|...++++.|+|.++|+++|||++ |+|+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~v~~~Pt~~liD~~~G~Vi~~ 123 (144)
T d1o8xa_ 74 GFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTT 123 (144)
T ss_dssp HHHHHHTTCSSEECCGGGHHHHHHHHHHTTCCSSSEEEEEETTTCCEEES
T ss_pred HHHHHHhhccccceeeecccchhhHHHHcCCCcCCEEEEEeCCCCEEEEE
Confidence 77777655443 34443 3556789999999999999999998 788643
|
| >d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Salmonella typhimurium [TaxId: 90371]
Probab=99.73 E-value=1e-17 Score=167.93 Aligned_cols=150 Identities=15% Similarity=0.072 Sum_probs=118.3
Q ss_pred CCCCCCCCCccccCCCCCc--eeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChh
Q 001380 425 KTTPIVPEFPAKLDWLNTA--PLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEK 501 (1089)
Q Consensus 425 ~~g~~~P~f~~~~~~~~g~--~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~ 501 (1089)
.+|+++|+|++... .+|+ +++| ++++||++||+|| +.||+.|..|++.|++.+++|++.++++++||. +
T Consensus 2 lIg~~aP~F~~~a~-~~g~~~~vsL-sd~kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~~~v~gIS~------D 73 (186)
T d1n8ja_ 2 LINTKIKPFKNQAF-KNGEFIEVTE-KDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVST------D 73 (186)
T ss_dssp CTTCBCCCCEEEEE-ETTEEEEEEH-HHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEES------S
T ss_pred CCCCcCCCCEeeee-eCCeeEEEeH-HHhCCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccccEEEEeccc------c
Confidence 47999999996521 2554 6888 9999999999999 788999999999999999999988999999985 6
Q ss_pred cHHHHHHHHHHcC----CccceeecCChhHHHHhCCC------ceeEEEEECCCCcEEEEecCCC----chhhHHHHHHH
Q 001380 502 DLEAIRNAVLRYG----ISHPVVNDGDMNLWRELGVN------SWPTFAVVGPNGKLLAQLAGEG----HRKDLDDLVEA 567 (1089)
Q Consensus 502 ~~~~~~~~~~~~~----~~~~v~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~G~~----~~~~l~~~l~~ 567 (1089)
+.+..++|+++++ ++||++.|++++++++||+. ..|++||||++|+|++.+.... +.+++-+.|++
T Consensus 74 s~~sh~~f~~~~~~~~~~~fpllsD~~~~v~~~yGv~~~~~g~~~r~tfiID~~G~Ir~~~v~~~~~~r~~~eiL~~lka 153 (186)
T d1n8ja_ 74 THFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKA 153 (186)
T ss_dssp CHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred CHHHHHHHhccccccccccccccccHHHHHHHHhCCCcccCCcceeeEEEECchheEEEEeecCCCcccCHHHHHHHHHH
Confidence 7777888888875 89999999999999999984 4689999999999998864433 34444444444
Q ss_pred HHHHhcccccccCCC
Q 001380 568 ALLFYGKKKLLDNTP 582 (1089)
Q Consensus 568 ~l~~~~~~~~l~~~~ 582 (1089)
+.-..+..|.+..-.
T Consensus 154 LQ~~~~~~g~~~p~~ 168 (186)
T d1n8ja_ 154 AQYVAAHPGEVCPAK 168 (186)
T ss_dssp HHHHHHSTTCBBCTT
T ss_pred HHHHHhcCCeEeCCC
Confidence 332233345555433
|
| >d2g80a1 c.108.1.22 (A:17-241) Protein UTR4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Enolase-phosphatase E1 domain: Protein UTR4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.72 E-value=1.8e-17 Score=173.63 Aligned_cols=203 Identities=13% Similarity=0.142 Sum_probs=127.8
Q ss_pred CceEEEEecCCcccCCch-------HHHHHHHHHHHHcCCCCCHHhHh-hhcCCCHHHHHHHHHhhcCCCCCCHHHHHHH
Q 001380 78 KVSAVLFDMDGVLCNSEE-------PSRRAAVDVFAEMGVEVTVEDFL-PFMGTGEANFLGGVASVKGVKGFDSEAAKKR 149 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~-------~~~~a~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (1089)
++++|+||+||||+|+.. ...+++.+.+.+.+.....+.+. .........+...+.......... .....
T Consensus 2 ~~~~~lfD~dGTl~d~~~v~d~lfp~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 79 (225)
T d2g80a1 2 NYSTYLLDIEGTVCPISFVKETLFPYFTNKVPQLVQQDTRDSPVSNILSQFHIDNKEQLQAHILELVAKDVKD--PILKQ 79 (225)
T ss_dssp CCSEEEECCBTTTBCTHHHHHTHHHHHHHHHHHHHHSCCTTSHHHHHHHTTCCCCHHHHHHHHHHHHHTTCCC--HHHHH
T ss_pred CCCEEEEcCCCCCcccHhhhhhhhHHHHHHHHHHHHHhcCChHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhh--HHHHH
Confidence 579999999999999752 12344555555555544433333 333334444433333222111111 11111
Q ss_pred HHHHH-HHHhcCC-CCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHH-----------HHHCCCCCCCccEEEEcC
Q 001380 150 FFEIY-LDKYAKP-NSGIGFPGALELINQCKSKGLKVAVASSADRIKVDAN-----------LAAAGLPVSMFDAIVSAD 216 (1089)
Q Consensus 150 ~~~~~-~~~~~~~-~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~-----------l~~~gl~~~~fd~i~~~~ 216 (1089)
+...+ ...+... ....+++++.+++. .+..+++.++......... ++.+++. .+||.+++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~Fd~v~~~~ 154 (225)
T d2g80a1 80 LQGYVWAHGYESGQIKAPVYADAIDFIK----RKKRVFIYSSGSVKAQKLLFGYVQDPNAPAHDSLDLN-SYIDGYFDIN 154 (225)
T ss_dssp HHHHHHHHHHHTTSCCBCCCHHHHHHHH----HCSCEEEECSSCHHHHHHHHHSBCCTTCTTSCCBCCG-GGCCEEECHH
T ss_pred HHHHHHHHHHHhhcccccchhhHHHHHh----hHHhhhhhhhccchhhhhhhhhhhhhHHHHHHhcCCc-cccceeeecc
Confidence 22211 1111111 12256677766654 3456788888665444433 4556775 8999999886
Q ss_pred CccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccC
Q 001380 217 AFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 217 ~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el 289 (1089)
.. ..||+|++|..+++++|++|++|+||||+.+|+.+|+++||++|+|.+.... ......+..++.+|.||
T Consensus 155 ~~-~~KP~p~~f~~~~~~lg~~p~e~l~VgD~~~Dv~~A~~aG~~ti~v~r~g~~-~~~~~~~~~~i~~~~eL 225 (225)
T d2g80a1 155 TS-GKKTETQSYANILRDIGAKASEVLFLSDNPLELDAAAGVGIATGLASRPGNA-PVPDGQKYQVYKNFETL 225 (225)
T ss_dssp HH-CCTTCHHHHHHHHHHHTCCGGGEEEEESCHHHHHHHHTTTCEEEEECCTTSC-CCCSSCCSCEESCSTTC
T ss_pred cc-CCCCChhHhHHHHHhcccCchhceeecCCHHHHHHHHHcCCEEEEEeCCCCC-CCcccCCCCccCChhhC
Confidence 55 4799999999999999999999999999999999999999999999864221 22234567788998876
|
| >d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=7.9e-18 Score=170.56 Aligned_cols=141 Identities=18% Similarity=0.206 Sum_probs=116.2
Q ss_pred cCCCCCCCCCCccc-cCCCCCceeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCCh
Q 001380 423 NRKTTPIVPEFPAK-LDWLNTAPLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNE 500 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~-~~~~~g~~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~ 500 (1089)
..++|+++|+|+++ +.+-+|+.++| ++++||++||+|| +.||+.|..|+..|++++++|++.++.|++||+
T Consensus 4 ~~~VG~~AP~F~l~~~~d~~~~~v~L-~d~~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~vigIS~------ 76 (197)
T d1qmva_ 4 NARIGKPAPDFKATAVVDGAFKEVKL-SDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSV------ 76 (197)
T ss_dssp TBCTTSBCCCCEEEEEETTEEEEEEG-GGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEES------
T ss_pred CCcCCCcCCCCCCcceeCCCCcEEeH-HHhCCCeEEEEEecccccccchhhhHHHHHHHHHhccCCcEEEEEec------
Confidence 45799999999864 23446778999 9999999999999 899999999999999999999999999999986
Q ss_pred hcHHHHHHHHHHc-------CCccceeecCChhHHHHhCCC------ceeEEEEECCCCcEEEEecCCC----chhhHHH
Q 001380 501 KDLEAIRNAVLRY-------GISHPVVNDGDMNLWRELGVN------SWPTFAVVGPNGKLLAQLAGEG----HRKDLDD 563 (1089)
Q Consensus 501 ~~~~~~~~~~~~~-------~~~~~v~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~G~~----~~~~l~~ 563 (1089)
++.+..++|.+++ +++||++.|.++++++.||+. ..|++|+||++|+|++.+.... +.+++.+
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~va~~ygv~~~~~g~~~R~tfiID~~g~Ir~~~~~~~~~~r~~~E~lr 156 (197)
T d1qmva_ 77 DSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALR 156 (197)
T ss_dssp SCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHH
T ss_pred CCHHHHHhhhcchhhhcCcCCCccceEeccchHHHHHhCCCcccCCeeeEEEEEECCCCcEEEEEecCCCcccCHHHHHH
Confidence 4555666666653 689999999999999999985 5789999999999998754432 4555555
Q ss_pred HHHHHHH
Q 001380 564 LVEAALL 570 (1089)
Q Consensus 564 ~l~~~l~ 570 (1089)
.|+.+..
T Consensus 157 ~l~alq~ 163 (197)
T d1qmva_ 157 LVQAFQY 163 (197)
T ss_dssp HHHHHHH
T ss_pred HHHhhcc
Confidence 5555443
|
| >d2gmwa1 c.108.1.19 (A:24-205) D,D-heptose 1,7-bisphosphate phosphatase GmhB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Histidinol phosphatase-like domain: D,D-heptose 1,7-bisphosphate phosphatase GmhB species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=2.3e-17 Score=166.90 Aligned_cols=128 Identities=19% Similarity=0.257 Sum_probs=101.0
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCCh---------------HhHHHHHHHCCCCCCCccEEEEc-----------CCc
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADR---------------IKVDANLAAAGLPVSMFDAIVSA-----------DAF 218 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~---------------~~~~~~l~~~gl~~~~fd~i~~~-----------~~~ 218 (1089)
.++||+.++|+.|+++|++++|+||... ......+...++. ..+..+|. ++.
T Consensus 27 ~~~~gv~e~l~~L~~~g~~~~ivTNq~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~cp~~p~~~~~~~~~~~ 104 (182)
T d2gmwa1 27 EFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVD--LDGIYYCPHHPQGSVEEFRQVC 104 (182)
T ss_dssp CBCTTHHHHHHHHHHTTCEEEEEEECTHHHHTSSCHHHHHHHHHHHHHHHHHTTCC--CSEEEEECCBTTCSSGGGBSCC
T ss_pred eECCCHHHHHHHHhhcCchhhhhhccchhhhhhhHHHhhhhhhhhhhhhhhhhccc--ccceeecccccccccccccccc
Confidence 6899999999999999999999999642 2233344555553 23334443 234
Q ss_pred cCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeE-EEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHh
Q 001380 219 ENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRC-IAVTTTLSEERLKEASPSLIRKEIGSVSLNDILT 296 (1089)
Q Consensus 219 ~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~-i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~ 296 (1089)
.+.||+|.++..+++++++++++++||||+.+|+++|++||+.+ ++|.+|....+..+..|+++++++.|+ .++++
T Consensus 105 ~~rKP~p~m~~~~~~~~~i~~~~s~mVGDs~~Di~aA~~Ag~~~~~lv~~g~~~~~~~~~~ad~v~~~l~dl--~~~ik 181 (182)
T d2gmwa1 105 DCRKPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAADWVLNSLADL--PQAIK 181 (182)
T ss_dssp SSSTTSCHHHHHHHHHHTBCGGGCEEEESSHHHHHHHHHTTCSEEEEESSSSCCCHHHHHHCSEEESCGGGH--HHHHH
T ss_pred cccCCccccccchhhhcccccccccccCCCHHHHHHHHHhCCCcEEEECCCCCCCcccccCCCEEECCHHHH--HHHhc
Confidence 56799999999999999999999999999999999999999965 778888755555556799999999998 55553
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.71 E-value=1.2e-15 Score=167.03 Aligned_cols=233 Identities=15% Similarity=0.139 Sum_probs=171.4
Q ss_pred ceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEE
Q 001380 604 GKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALRE 683 (1089)
Q Consensus 604 ~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~ 683 (1089)
.|...|+.+++||++|..+++|.++++++.....+..+ ..|.+++..++|+ ++|+. .+.|.+
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~---------------~~~~~i~~~~dg~-l~va~--~~gl~~ 82 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKTVHALP---------------FMGSALAKISDSK-QLIAS--DDGLFL 82 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECS---------------SCEEEEEEEETTE-EEEEE--TTEEEE
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEECC---------------CCcEEEEEecCCC-EEEEE--eCccEE
Confidence 56788988999999999999999999998777666543 1568999999887 88886 468999
Q ss_pred EECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC------CcEEEEEECCCCeEEEEeCCC
Q 001380 684 IDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG------QHQIWEHSTVDGVTRAFSGDG 757 (1089)
Q Consensus 684 ~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~------~~~I~~~~~~~g~~~~~~g~g 757 (1089)
+|++++.++.++..-. ....+.|++++++++| .+|+++.. .+.+++++ .+.++.+.
T Consensus 83 ~d~~tg~~~~l~~~~~------------~~~~~~~nd~~vd~~G-~iw~~~~~~~~~~~~g~l~~~~--~g~~~~~~--- 144 (295)
T d2ghsa1 83 RDTATGVLTLHAELES------------DLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVA--KGKVTKLF--- 144 (295)
T ss_dssp EETTTCCEEEEECSST------------TCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEE--TTEEEEEE---
T ss_pred eecccceeeEEeeeec------------CCCcccceeeEECCCC-CEEEEeccccccccceeEeeec--CCcEEEEe---
Confidence 9999999998874211 1124579999999998 79998743 33455554 45555544
Q ss_pred ccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCcccccccc
Q 001380 758 YERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQ 837 (1089)
Q Consensus 758 ~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~ 837 (1089)
..+..|+|++++++++.+|++|+.+++|++++.+..... ..+. ...|-...+ ...
T Consensus 145 ------------~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~-~~~~-------~~~~~~~~~-----~~g 199 (295)
T d2ghsa1 145 ------------ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGL-PTGK-------AEVFIDSTG-----IKG 199 (295)
T ss_dssp ------------EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCC-BSSC-------CEEEEECTT-----SSS
T ss_pred ------------eccCCcceeeecCCCceEEEeecccceeeEeeecccccc-cccc-------eEEEeccCc-----ccc
Confidence 235579999999999999999999999999987632110 0000 000000000 123
Q ss_pred CceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEcc-CC-cEEEEECC
Q 001380 838 HPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQ-NG-NLFIADTN 911 (1089)
Q Consensus 838 ~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~-~G-~lyVad~~ 911 (1089)
.|.|+++|.+|+||||....++|.+|||++..+..+.- .-..|+.+|+.+ ++ +|||+...
T Consensus 200 ~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~~~~~i~l--------------P~~~~T~~~FGG~d~~~LyvTta~ 261 (295)
T d2ghsa1 200 GMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEV--------------PGKQTTCPAFIGPDASRLLVTSAR 261 (295)
T ss_dssp EEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEEC--------------SCSBEEEEEEESTTSCEEEEEEBC
T ss_pred cccceEEcCCCCEEeeeeCCCceEEecCCCcEeeEecC--------------CCCceEEEEEeCCCCCEEEEEECC
Confidence 69999999999999999999999999999888877753 124589999974 43 59998653
|
| >d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=1.9e-17 Score=164.01 Aligned_cols=121 Identities=12% Similarity=0.116 Sum_probs=104.1
Q ss_pred CCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhc
Q 001380 424 RKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKD 502 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~ 502 (1089)
.++|++||+|++. +.+|+.++| ++++||++||+|| +.||++|..+++.|++++.+++ ++.+++|+. ++
T Consensus 18 ~~vG~~APdF~L~--~~~g~~vsL-sd~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~--~~~vv~Is~------d~ 86 (164)
T d1qxha_ 18 PQAGSKAQTFTLV--AKDLSDVTL-GQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEID--NTVVLCISA------DL 86 (164)
T ss_dssp CCTTSBCCCCEEE--CTTSCEEEG-GGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTST--TEEEEEEES------SC
T ss_pred CCCCCCCCCeEEE--CCCCCEEeH-HHhCCCeEEEEEecchhcccchHHHHHHHHHHHhhc--cceeeeEEc------CC
Confidence 4799999999965 559999999 8999999999999 6799999999999999988775 689999985 56
Q ss_pred HHHHHHHHHHcCCccceee--cCChhHHHHhCCC---------ceeEEEEECCCCcEEEEecCC
Q 001380 503 LEAIRNAVLRYGISHPVVN--DGDMNLWRELGVN---------SWPTFAVVGPNGKLLAQLAGE 555 (1089)
Q Consensus 503 ~~~~~~~~~~~~~~~~v~~--d~~~~l~~~~~v~---------~~Pt~~lid~~G~i~~~~~G~ 555 (1089)
++..+++.++++++++++. |.+.++++.||+. ..|++||||++|+|++.+...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ygv~~~~~~~~g~~~ra~fvID~~G~I~y~~~~~ 150 (164)
T d1qxha_ 87 PFAQSRFCGAEGLNNVITLSTFRNAEFLQAYGVAIADGPLKGLAARAVVVIDENDNVIFSQLVD 150 (164)
T ss_dssp HHHHTTCCSSTTCTTEEEEECTTCHHHHHHTTCBBCSSTTTTSBCCEEEEECTTSBEEEEEECS
T ss_pred HHHHHHHHHHhCCCcceeeccccchhhHHhcCeEeecCcccCcccCEEEEEcCCCEEEEEEEcC
Confidence 7788899999999988764 5688999999974 247899999999999986543
|
| >d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin species: Aeropyrum pernix [TaxId: 56636]
Probab=99.69 E-value=2.8e-17 Score=170.22 Aligned_cols=148 Identities=16% Similarity=0.143 Sum_probs=115.1
Q ss_pred CCCCCCCCCccccCCCCCceeecccc---cCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCCh
Q 001380 425 KTTPIVPEFPAKLDWLNTAPLQFRRD---LKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNE 500 (1089)
Q Consensus 425 ~~g~~~P~f~~~~~~~~g~~~~l~~~---~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~ 500 (1089)
.+|+++|+|++.. .+|+ +++ .+ .+||++||+|| +.||+.|..|++.|++++++|++.|+.+||||+ +..
T Consensus 2 lIGd~aPdF~l~t--~~G~-i~~-~d~~~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~---Ds~ 74 (237)
T d2zcta1 2 LIGERFPEMEVTT--DHGV-IKL-PDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSV---DSV 74 (237)
T ss_dssp CTTSBCCCEEEEE--TTEE-EEE-THHHHTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEES---SCH
T ss_pred CCCCCCCCeEEEc--CCCC-EEe-chHhhcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcceeeccC---CcH
Confidence 4799999999654 3774 666 44 38999999999 999999999999999999999999999999998 445
Q ss_pred hcHHHHHHHHH---HcCCccceeecCChhHHHHhCC-------CceeEEEEECCCCcEEEEecCCC----chhhHHHHHH
Q 001380 501 KDLEAIRNAVL---RYGISHPVVNDGDMNLWRELGV-------NSWPTFAVVGPNGKLLAQLAGEG----HRKDLDDLVE 566 (1089)
Q Consensus 501 ~~~~~~~~~~~---~~~~~~~v~~d~~~~l~~~~~v-------~~~Pt~~lid~~G~i~~~~~G~~----~~~~l~~~l~ 566 (1089)
.+..+|.+..+ ..+++||++.|.+.++++.||+ ...|++||||++|+|++.+.... +.+++.+.|+
T Consensus 75 ~sh~~w~~~~~~~~~~~l~fpllsD~~~~vak~yGv~~~~~~~~~~RatFIIDpdG~Ir~~~~~~~~~gR~~dEiLr~l~ 154 (237)
T d2zcta1 75 FSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVK 154 (237)
T ss_dssp HHHHHHHHHHHHHHCCCCCSCEEECGGGHHHHHTTCC----CCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHH
T ss_pred HHHHHHhhhhhhhcccccccccccCcchHHHHHcCCccccccccceeeeEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 56666666554 3678999999999999999998 46899999999999998855433 4555555555
Q ss_pred HHHHHhcccccccC
Q 001380 567 AALLFYGKKKLLDN 580 (1089)
Q Consensus 567 ~~l~~~~~~~~l~~ 580 (1089)
. |+.....|....
T Consensus 155 a-LQ~~~~~~~~~P 167 (237)
T d2zcta1 155 A-LKLGDSLKRAVP 167 (237)
T ss_dssp H-HHHHHHHTCBBC
T ss_pred H-HhhhccCCcCCc
Confidence 4 334444444433
|
| >d2b0ca1 c.108.1.2 (A:8-204) Putative phosphatase YihX {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: YihX-like domain: Putative phosphatase YihX species: Escherichia coli [TaxId: 562]
Probab=99.68 E-value=1.3e-17 Score=170.30 Aligned_cols=104 Identities=15% Similarity=0.239 Sum_probs=96.7
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHC-CCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEE
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAA-GLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECI 243 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~-gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v 243 (1089)
.+++++.+++..++++|++++++||+........+.++ ++. .+|+.++++++.+..||+|++|+.+++++|++|++|+
T Consensus 84 ~~~~~~~~l~~~l~~~~~~~~i~t~~~~~~~~~~~~~~~~l~-~~fd~v~~s~~~~~~Kp~~~~~~~~~~~~~~~~~~~l 162 (197)
T d2b0ca1 84 ALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEIR-DAADHIYLSQDLGMRKPEARIYQHVLQAEGFSPSDTV 162 (197)
T ss_dssp EECHHHHHHHHHHHHTTCEEEEEECCCCCTTSCCGGGCHHHH-HHCSEEEEHHHHTCCTTCHHHHHHHHHHHTCCGGGEE
T ss_pred ccCchhHHHHHHHHhcCCeEEEEeCccHHHHHHHHHHcccch-hhccceeecccccccccchHHHHHHHHhcCCCCCeEE
Confidence 67899999999999999999999998887777777776 785 8999999999999999999999999999999999999
Q ss_pred EEcCChhhHHHHHHcCCeEEEEcCCC
Q 001380 244 VIEDALAGVQAAKAAQMRCIAVTTTL 269 (1089)
Q Consensus 244 ~VGD~~~Di~aA~~aG~~~i~V~~g~ 269 (1089)
||||+.+|+++|+++||++|+|....
T Consensus 163 ~vgDs~~di~~A~~aG~~ti~v~~~~ 188 (197)
T d2b0ca1 163 FFDDNADNIEGANQLGITSILVKDKT 188 (197)
T ss_dssp EEESCHHHHHHHHTTTCEEEECCSTT
T ss_pred EEeCCHHHHHHHHHcCCEEEEECCCC
Confidence 99999999999999999999998754
|
| >d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Glutathione peroxidase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=2.4e-16 Score=157.39 Aligned_cols=138 Identities=21% Similarity=0.290 Sum_probs=110.9
Q ss_pred CCCCccccCCCC-CceeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCCh--hcHHHH
Q 001380 430 VPEFPAKLDWLN-TAPLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNE--KDLEAI 506 (1089)
Q Consensus 430 ~P~f~~~~~~~~-g~~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~--~~~~~~ 506 (1089)
+-||+. .+++ |+.++| ++++||+|||+|||+||++|..+.+.|++|+++|+++|++|+++.+..|..+ .+.+++
T Consensus 3 iydf~~--~~l~~g~~vsL-~~ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~fP~nqF~~qE~~~~~ei 79 (184)
T d2f8aa1 3 VYAFSA--RPLAGGEPVSL-GSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEI 79 (184)
T ss_dssp GGGCEE--CBTTCSSCEEG-GGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSCHHHH
T ss_pred eeeeEE--EECCCCCEecH-HHcCCCEEEEEEecccCCcchhhhHHHHHhhhhhcccceeEEEeeccccccccccchhhh
Confidence 456774 4555 678999 9999999999999999999999999999999999999999999999988543 477889
Q ss_pred HHHHH------HcCCccceee------cCChhHHHHh------------CCCcee-----------------EEEEECCC
Q 001380 507 RNAVL------RYGISHPVVN------DGDMNLWREL------------GVNSWP-----------------TFAVVGPN 545 (1089)
Q Consensus 507 ~~~~~------~~~~~~~v~~------d~~~~l~~~~------------~v~~~P-----------------t~~lid~~ 545 (1089)
+++++ .++.+||+.. +....+++.+ ++...| +.||||++
T Consensus 80 ~~f~~~~~~~~~~~~~f~~~~ki~VnG~~a~ply~~Lk~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~WNFtKFLIdr~ 159 (184)
T d2f8aa1 80 LNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPD 159 (184)
T ss_dssp HHHHHHTSSCTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECTT
T ss_pred hhhhheeccccccccccccceeeeecCCCCCHHHHHHHhhCCCCccccccccccccccccccccCCCccceEEEEEECCC
Confidence 99987 4567777643 2234555433 222333 78999999
Q ss_pred CcEEEEecCCCchhhHHHHHHHHHH
Q 001380 546 GKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 546 G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
|+++.++.+..+++++++.|+++|+
T Consensus 160 G~vv~rf~~~~~p~~i~~~Ie~lL~ 184 (184)
T d2f8aa1 160 GVPLRRYSRRFQTIDIEPDIEALLS 184 (184)
T ss_dssp SCEEEEECTTSCGGGGHHHHHHHHC
T ss_pred CCEEEEECCCCCHHHHHHHHHHHhC
Confidence 9999999988888899999988873
|
| >d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=1.4e-16 Score=163.73 Aligned_cols=147 Identities=18% Similarity=0.216 Sum_probs=115.3
Q ss_pred CCCCCCCCCCccccCCCCCceeecccccCC-CEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChh
Q 001380 424 RKTTPIVPEFPAKLDWLNTAPLQFRRDLKG-KVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEK 501 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~~~~l~~~~~g-k~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~ 501 (1089)
+.+|+++|+|++... +|+ ++| ++++| |++||.|| +.||+.|..|+..|++.+++|++.++.++|||+ +..+
T Consensus 1 L~VGd~APdF~l~~~--~G~-v~L-sd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g~~v~giS~---Ds~~ 73 (220)
T d1prxa_ 1 LLLGDVAPNFEANTT--VGR-IRF-HDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSI---DSVE 73 (220)
T ss_dssp CCTTCBCCCCEEEET--TEE-EEH-HHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEES---SCHH
T ss_pred CCCCCCCCCcEeecC--CCC-EEe-HHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcccceeecccc---cccc
Confidence 358999999997543 775 999 78876 89999999 789999999999999999999999999999997 5556
Q ss_pred cHHHHHHHHHH-------cCCccceeecCChhHHHHhCCC------------ceeEEEEECCCCcEEEEecCCC----ch
Q 001380 502 DLEAIRNAVLR-------YGISHPVVNDGDMNLWRELGVN------------SWPTFAVVGPNGKLLAQLAGEG----HR 558 (1089)
Q Consensus 502 ~~~~~~~~~~~-------~~~~~~v~~d~~~~l~~~~~v~------------~~Pt~~lid~~G~i~~~~~G~~----~~ 558 (1089)
+..+|.+..+. .+++||++.|.+.+++++||+. ..+++||||++|+|++...... +.
T Consensus 74 sh~~~~~~~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~~~~~~~~gR~~ 153 (220)
T d1prxa_ 74 DHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNF 153 (220)
T ss_dssp HHHHHHHHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCH
T ss_pred chhhhhhhhhhccccccccCcccccccCcccHHHHHhCCccccccccccceeeeEEEEEEcCccceeEEEEecCCcccch
Confidence 66666665553 3688999999999999999985 4689999999999999865443 34
Q ss_pred hhHHHHHHHHHHHhcccccc
Q 001380 559 KDLDDLVEAALLFYGKKKLL 578 (1089)
Q Consensus 559 ~~l~~~l~~~l~~~~~~~~l 578 (1089)
+++.+.|+. |+...+.|..
T Consensus 154 dEiLr~l~a-lq~~~~~~~~ 172 (220)
T d1prxa_ 154 DEILRVVIS-LQLTAEKRVA 172 (220)
T ss_dssp HHHHHHHHH-HHHHHHHCEE
T ss_pred HHHHHHHHH-HhhhhcCCcC
Confidence 444444443 3333333443
|
| >d2fpwa1 c.108.1.19 (A:3-163) Histidine biosynthesis bifunctional protein HisB, phosphatase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Histidinol phosphatase-like domain: Histidine biosynthesis bifunctional protein HisB, phosphatase domain species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=3.6e-17 Score=160.95 Aligned_cols=102 Identities=17% Similarity=0.220 Sum_probs=82.6
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCC---------------hHhHHHHHHHCCCCCCCccEEEE-----cCCccCCCCC
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSAD---------------RIKVDANLAAAGLPVSMFDAIVS-----ADAFENLKPA 224 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~---------------~~~~~~~l~~~gl~~~~fd~i~~-----~~~~~~~KP~ 224 (1089)
.++||+.++|+.|+++|++++|+||.. ...+...++..|+. ++.++. .++....||+
T Consensus 30 ~~~pgv~e~L~~L~~~g~~l~i~TNq~~ia~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~i~~~~~~~~~~~~~~KP~ 106 (161)
T d2fpwa1 30 AFEPGVIPQLLKLQKAGYKLVMITNQDGLGTQSFPQADFDGPHNLMMQIFTSQGVQ---FDEVLICPHLPADECDCRKPK 106 (161)
T ss_dssp CBCTTHHHHHHHHHHTTEEEEEEEECTTTTSTTSCHHHHHHHHHHHHHHHHHTTCC---EEEEEEECCCGGGCCSSSTTS
T ss_pred eECccHHHHHHHHHHcCCceeeecccccchhHHHHHHHhhhhhhhhhhhccccccc---cceeeeccccccccccccccc
Confidence 689999999999999999999999953 23355667777775 444432 3456678999
Q ss_pred HHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCC
Q 001380 225 PDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTL 269 (1089)
Q Consensus 225 ~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~ 269 (1089)
|.++.++++++|++|++++||||+.+|+++|+++||++++|.++.
T Consensus 107 p~~~~~~~~~~~id~~~~~~IGD~~~Di~aA~~aG~~~i~i~~~~ 151 (161)
T d2fpwa1 107 VKLVERYLAEQAMDRANSYVIGDRATDIQLAENMGINGLRYDRET 151 (161)
T ss_dssp SGGGGGGC----CCGGGCEEEESSHHHHHHHHHHTSEEEECBTTT
T ss_pred cHHHHHHHHhcCCChhcEEEECCCHHHHHHHHHcCCeEEEECCCC
Confidence 999999999999999999999999999999999999999998764
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.65 E-value=1.8e-13 Score=148.15 Aligned_cols=246 Identities=23% Similarity=0.389 Sum_probs=190.7
Q ss_pred CCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCE
Q 001380 602 FPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHA 680 (1089)
Q Consensus 602 ~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~ 680 (1089)
.|.+++++|.+.+|||++..+++|.++|.. ++.+.++... ..|.+++++++++.+|++...+..
T Consensus 33 ~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~ 97 (301)
T d1l0qa2 33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG---------------SSPQGVAVSPDGKQVYVTNMASST 97 (301)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS---------------SSEEEEEECTTSSEEEEEETTTTE
T ss_pred CceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecc---------------ccccccccccccccccccccccce
Confidence 588999999677899999999999999986 6666666543 268999999999999999999999
Q ss_pred EEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccc
Q 001380 681 LREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYER 760 (1089)
Q Consensus 681 I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~ 760 (1089)
++.++..++......... ..|..+++++++..++++......+..++..++.......
T Consensus 98 ~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 155 (301)
T d1l0qa2 98 LSVIDTTSNTVAGTVKTG-----------------KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS----- 155 (301)
T ss_dssp EEEEETTTTEEEEEEECS-----------------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-----
T ss_pred eeecccccceeeeecccc-----------------ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecc-----
Confidence 999999888755554221 2678999999999999999888889999988776554331
Q ss_pred cCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCce
Q 001380 761 NLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPL 840 (1089)
Q Consensus 761 ~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~ 840 (1089)
....|..++++++++.+|++......+................ -..|.
T Consensus 156 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~ 203 (301)
T d1l0qa2 156 ----------VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV----------------------EAAPS 203 (301)
T ss_dssp ----------CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC----------------------SSEEE
T ss_pred ----------cCCCceEEEeeccccceeeecccccccccccccceeeeecccc----------------------cCCcc
Confidence 1235789999999999999999888888887665443322110 12488
Q ss_pred EEEEccCCc-EEEEe--CCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEEEECCCCEEE
Q 001380 841 GVYCAKNGQ-IYVAD--SYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADTNNNIIR 916 (1089)
Q Consensus 841 gva~~~~G~-lyVaD--~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~~n~~I~ 916 (1089)
+++++++|+ +|++. ...+.|.++|..++.+......+ ..|.+++++++|+ |||+...+++|.
T Consensus 204 ~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~--------------~~~~~va~spdg~~l~va~~~~~~i~ 269 (301)
T d1l0qa2 204 GIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG--------------PDPAGIAVTPDGKKVYVALSFCNTVS 269 (301)
T ss_dssp EEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC--------------SSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred eeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC--------------CCEEEEEEeCCCCEEEEEECCCCeEE
Confidence 999999884 77765 45678999999888765433222 3589999999996 899999999999
Q ss_pred EEeCCCCCceEEEEe
Q 001380 917 YLDLNKEEPELQTLE 931 (1089)
Q Consensus 917 ~~~~~~~~~~~~~l~ 931 (1089)
++++.+. ..+.++.
T Consensus 270 v~D~~t~-~~~~~~~ 283 (301)
T d1l0qa2 270 VIDTATN-TITATMA 283 (301)
T ss_dssp EEETTTT-EEEEEEE
T ss_pred EEECCCC-eEEEEEe
Confidence 9999887 2455665
|
| >d2o2xa1 c.108.1.19 (A:8-216) Hypothetical protein Mll2559 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Histidinol phosphatase-like domain: Hypothetical protein Mll2559 species: Mesorhizobium loti [TaxId: 381]
Probab=99.65 E-value=2.3e-16 Score=162.18 Aligned_cols=124 Identities=23% Similarity=0.316 Sum_probs=94.6
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCC---------------hHhHHHHHHHCCCCCCCccEEEEcC------------C
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSAD---------------RIKVDANLAAAGLPVSMFDAIVSAD------------A 217 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~---------------~~~~~~~l~~~gl~~~~fd~i~~~~------------~ 217 (1089)
.++||+.++|+.|+++|++++|+||.. ...+...++..|+. ++.++.+. +
T Consensus 48 ~l~pgv~e~L~~L~~~G~~l~IvTNQ~gi~~g~~~~~~~~~~~~~~~~~l~~~g~~---~~~~~~~~~~~~~~~~~~~~~ 124 (209)
T d2o2xa1 48 VLRPQMLPAIATANRAGIPVVVVTNQSGIARGYFGWSAFAAVNGRVLELLREEGVF---VDMVLACAYHEAGVGPLAIPD 124 (209)
T ss_dssp CBCGGGHHHHHHHHHHTCCEEEEEECHHHHTTSCCHHHHHHHHHHHHHHHHHTTCC---CSEEEEECCCTTCCSTTCCSS
T ss_pred EecccHHHHHHHHHhhCCeEEEecccccchhhhhhhhhhhhhhhHHHHHhhhcccc---cceEEEecccccccccccccc
Confidence 689999999999999999999999832 12344556666664 55555442 2
Q ss_pred ccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCC-HHHHHh
Q 001380 218 FENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVS-LNDILT 296 (1089)
Q Consensus 218 ~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~-i~~ll~ 296 (1089)
..+.||+|.|+.++++++++++++|+||||+.+|+++|++|||++++|.+|... ..+++.+.++.++. +.+|++
T Consensus 125 ~~~rKP~p~ml~~a~~~~~i~~~~~~~VGD~~~Di~aA~~AGi~~i~v~~g~~~-----~~~~~~~~~~~~~~e~~dll~ 199 (209)
T d2o2xa1 125 HPMRKPNPGMLVEAGKRLALDLQRSLIVGDKLADMQAGKRAGLAQGWLVDGEAA-----VQPGFAIRPLRDSSELGDLLA 199 (209)
T ss_dssp CTTSTTSCHHHHHHHHHHTCCGGGCEEEESSHHHHHHHHHTTCSEEEEETCCCE-----EETTEEEEEESSHHHHHHHHH
T ss_pred cccccccchhhhHhHHHhCCCccceEEeCCCHHHHHHHHHCCCcEEEEeCCCCc-----ccCCccccCccchhHHHHHHH
Confidence 234699999999999999999999999999999999999999999999887532 23455556555541 355554
|
| >d2c4na1 c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: NagD-like domain: NagD species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=1.6e-17 Score=177.55 Aligned_cols=81 Identities=22% Similarity=0.328 Sum_probs=70.2
Q ss_pred ccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCCh-hhHHHHHHcCCeEEEEcCCC-CHHHHhh--cCCcEEec
Q 001380 209 FDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDAL-AGVQAAKAAQMRCIAVTTTL-SEERLKE--ASPSLIRK 284 (1089)
Q Consensus 209 fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~-~~~~l~~--~~~d~vi~ 284 (1089)
++.+.+.+....+||+|.+|+++++++|++|++|+||||++ +||++|+++||++|+|.+|. ..+++.. ..||++++
T Consensus 163 ~~~~~~~~~~~~~KP~p~~~~~a~~~lgi~p~e~v~IGD~~~~DI~~a~~aG~~tilV~~G~~~~~~l~~~~~~pd~i~~ 242 (250)
T d2c4na1 163 IEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSSLDDIDSMPFRPSWIYP 242 (250)
T ss_dssp HHHHHCCCCEECSTTSTHHHHHHHHHHTCCGGGEEEEESCTTTHHHHHHHTTCEEEEESSSSCCGGGGSSCSSCCSEEES
T ss_pred HHHhhcccchhcccchhhhHhhhhhhhcCCchheEEecCChHHHHHHHHHCCCCEEEECCCCCCHHHHHhCCCCCCEEEC
Confidence 33444556667789999999999999999999999999998 79999999999999999997 6666655 36899999
Q ss_pred CcccC
Q 001380 285 EIGSV 289 (1089)
Q Consensus 285 dl~el 289 (1089)
++.||
T Consensus 243 sl~eL 247 (250)
T d2c4na1 243 SVAEI 247 (250)
T ss_dssp SGGGC
T ss_pred CHHHh
Confidence 99998
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.65 E-value=5.3e-15 Score=162.51 Aligned_cols=209 Identities=14% Similarity=0.099 Sum_probs=153.9
Q ss_pred CcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC
Q 001380 658 RPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ 737 (1089)
Q Consensus 658 ~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~ 737 (1089)
.|+++|++++|+ |||+|..+++|+++++++. .+.++... ..|++++++++| .+||++.+.
T Consensus 29 ~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~-~~~~~~~~-----------------~~~~gla~~~dG-~l~v~~~~~ 88 (302)
T d2p4oa1 29 FLENLASAPDGT-IFVTNHEVGEIVSITPDGN-QQIHATVE-----------------GKVSGLAFTSNG-DLVATGWNA 88 (302)
T ss_dssp CEEEEEECTTSC-EEEEETTTTEEEEECTTCC-EEEEEECS-----------------SEEEEEEECTTS-CEEEEEECT
T ss_pred CcCCEEECCCCC-EEEEeCCCCEEEEEeCCCC-EEEEEcCC-----------------CCcceEEEcCCC-CeEEEecCC
Confidence 578999999999 9999999999999998754 45554322 268999999998 699999988
Q ss_pred cEEEEEECC--CCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCC
Q 001380 738 HQIWEHSTV--DGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDP 815 (1089)
Q Consensus 738 ~~I~~~~~~--~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~ 815 (1089)
+.+++++.. .+..+.+... .....|++++++++| ++|++++..+.|+++++.++..........
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~n~i~~~~~g-~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~ 154 (302)
T d2p4oa1 89 DSIPVVSLVKSDGTVETLLTL-------------PDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPM 154 (302)
T ss_dssp TSCEEEEEECTTSCEEEEEEC-------------TTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECGG
T ss_pred ceEEEEEecccccceeecccc-------------CCccccceeEEccCC-CEEeeccccccceeeeccCCcceeEecCCc
Confidence 887776643 3444444321 123468999999998 999999999999999998776554433211
Q ss_pred CCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCc
Q 001380 816 IFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPA 895 (1089)
Q Consensus 816 ~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~ 895 (1089)
... ......+.+|.|++.+ .+.+|++++.+++|.+++..+....... ........|.
T Consensus 155 ~~~-----------~~~~~~~~~~ngi~~~-~~~l~~~~~~~~~i~~~~~~~~~~~~~~-----------~~~~~~~~pd 211 (302)
T d2p4oa1 155 LAR-----------SNSESVFPAANGLKRF-GNFLYVSNTEKMLLLRIPVDSTDKPGEP-----------EIFVEQTNID 211 (302)
T ss_dssp GSC-----------SSTTCCSCSEEEEEEE-TTEEEEEETTTTEEEEEEBCTTSCBCCC-----------EEEEESCCCS
T ss_pred cce-----------eeccCccccccccccc-CCceeeecCCCCeEEecccccccccccc-----------ccccCCCCCc
Confidence 000 0111235578899887 4689999999999999987543211100 0011245699
Q ss_pred eEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 896 GIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 896 gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
||++|++|+|||++..+++|.+++++++
T Consensus 212 gia~d~dG~l~va~~~~~~V~~i~p~G~ 239 (302)
T d2p4oa1 212 DFAFDVEGNLYGATHIYNSVVRIAPDRS 239 (302)
T ss_dssp SEEEBTTCCEEEECBTTCCEEEECTTCC
T ss_pred ceEECCCCCEEEEEcCCCcEEEECCCCC
Confidence 9999999999999999999999999886
|
| >d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol peroxidase PsaD species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.63 E-value=1.1e-15 Score=151.13 Aligned_cols=122 Identities=12% Similarity=0.025 Sum_probs=100.8
Q ss_pred cCCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChh
Q 001380 423 NRKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEK 501 (1089)
Q Consensus 423 ~~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~ 501 (1089)
..++|+++|+|++. +.+|++++| ++++||++||.|| +.||+.|..+++.|++.+++++ ++.+++|+. +
T Consensus 15 ~l~vG~~aPdF~L~--~~~g~~vsL-sd~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~--~~~vv~Is~------d 83 (163)
T d1psqa_ 15 QLQVGDKALDFSLT--TTDLSKKSL-ADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD--NTVVLTVSM------D 83 (163)
T ss_dssp CCCTTSBCCCCEEE--CTTSCEEEG-GGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCT--TEEEEEEES------S
T ss_pred CCCCCCCCCCeEEE--CCCCCEEeh-HHhCCcEEEEEeccccccccchhhHHHHHHHHHhhc--ccceEEEEe------c
Confidence 45799999999964 559999999 9999999999999 7799999999999998888775 688999975 5
Q ss_pred cHHHHHHHHHHcCCcccee-ec-CChhHHHHhCCCc------eeEEEEECCCCcEEEEecCC
Q 001380 502 DLEAIRNAVLRYGISHPVV-ND-GDMNLWRELGVNS------WPTFAVVGPNGKLLAQLAGE 555 (1089)
Q Consensus 502 ~~~~~~~~~~~~~~~~~v~-~d-~~~~l~~~~~v~~------~Pt~~lid~~G~i~~~~~G~ 555 (1089)
++...+++.++++..++.+ .| .+..+++.||+.. .|++||||++|+|++.+.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ygv~~~~~~~~~Ra~fvID~~G~I~y~~~~~ 145 (163)
T d1psqa_ 84 LPFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEYVD 145 (163)
T ss_dssp CHHHHHHHHHHHTCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEECS
T ss_pred cHHHHHHHHHHcCCcceeeeccccchhHHHhheeecccccceeEEEEEECCCCEEEEEEEcC
Confidence 6677788888888887544 33 4678999999853 34789999999999886543
|
| >d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.63 E-value=3.4e-16 Score=156.63 Aligned_cols=137 Identities=19% Similarity=0.287 Sum_probs=106.0
Q ss_pred CCCCCCCCCccccCCCCCceeecccccCCCEEEEEEecCCCc-chhhhhhhHHHHHHHcCC--CCEEEEEEeCCCCCChh
Q 001380 425 KTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCI-NCMHVLPDLEFLEKKYKD--MPFTVVGVHSAKFDNEK 501 (1089)
Q Consensus 425 ~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~-~C~~~~p~l~~l~~~~~~--~~v~vi~v~~~~~~~~~ 501 (1089)
.++.++|+|++. +.+|+.+++ ++++||++||+||++||+ .|..+++.|+++++++++ ..+.+|+|+++ ...+
T Consensus 6 p~~~~~p~F~l~--d~~G~~vsl-~d~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiD--p~~D 80 (172)
T d1xzoa1 6 PLNYEVEPFTFQ--NQDGKNVSL-ESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVD--PEND 80 (172)
T ss_dssp CCCEECCCCEEE--CTTSCEEET-GGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESC--TTTC
T ss_pred CCCCcCCCeEEE--cCCCCEEcH-HHhCCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccc--cccc
Confidence 467789999965 559999999 999999999999999998 599999999999998853 46899999884 2346
Q ss_pred cHHHHHHHHHHcCCcc---ceeecCChhH-----HHHhCC-----------CceeEEEEECCCCcEEEEecCCCc--hhh
Q 001380 502 DLEAIRNAVLRYGISH---PVVNDGDMNL-----WRELGV-----------NSWPTFAVVGPNGKLLAQLAGEGH--RKD 560 (1089)
Q Consensus 502 ~~~~~~~~~~~~~~~~---~v~~d~~~~l-----~~~~~v-----------~~~Pt~~lid~~G~i~~~~~G~~~--~~~ 560 (1089)
+++.+++|++++++.+ .++.+..... ++.|++ ...|.+||||++|+|+..+.|... .++
T Consensus 81 tp~~l~~y~~~~~~~~~~w~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~~~~~~~ 160 (172)
T d1xzoa1 81 KPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDD 160 (172)
T ss_dssp CHHHHHHHHTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCCHHH
T ss_pred hHHHHHHHHHHhccccccceeeccchHHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEEEEEcCCCCCCHHH
Confidence 7899999999999876 4666655443 344443 234789999999999988877532 344
Q ss_pred HHHHHH
Q 001380 561 LDDLVE 566 (1089)
Q Consensus 561 l~~~l~ 566 (1089)
+.+.|+
T Consensus 161 l~~dik 166 (172)
T d1xzoa1 161 IISDVK 166 (172)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.63 E-value=1.1e-15 Score=156.08 Aligned_cols=150 Identities=12% Similarity=0.177 Sum_probs=110.8
Q ss_pred CCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhc
Q 001380 424 RKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKD 502 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~ 502 (1089)
.++|+++|+|++.... ..+.+++++.++||++||+|| +.||+.|..|+..+++++++|++.|+++||||. +...+
T Consensus 2 i~iGd~aPdF~l~~~~-~~g~i~l~d~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~~~vigiS~---Ds~~s 77 (219)
T d1xcca_ 2 YHLGATFPNFTAKASG-IDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSC---NSKES 77 (219)
T ss_dssp CCTTCBCCCCEECBTT-CSSCEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEES---SCHHH
T ss_pred CcCCCCCCCcEeeccC-CCCcEEeHHHcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccceEEEeecC---ccHhH
Confidence 4689999999975432 123689944458999999999 899999999999999999999999999999997 33334
Q ss_pred HHHHHHHHHH----cCCccceeecCChhHHHHhCCC------------ceeEEEEECCCCcEEEEecC-C---CchhhHH
Q 001380 503 LEAIRNAVLR----YGISHPVVNDGDMNLWRELGVN------------SWPTFAVVGPNGKLLAQLAG-E---GHRKDLD 562 (1089)
Q Consensus 503 ~~~~~~~~~~----~~~~~~v~~d~~~~l~~~~~v~------------~~Pt~~lid~~G~i~~~~~G-~---~~~~~l~ 562 (1089)
..+|.+..++ .+++||++.|.+.++++.||+. ...++||||++|+|++.+.. . .+.+++.
T Consensus 78 h~~w~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EiL 157 (219)
T d1xcca_ 78 HDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEIL 157 (219)
T ss_dssp HHHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHH
T ss_pred HhHHhhhhHhhcccCCCCcccccccccHHHHHhCCcccccccCcccceeeeeeEEEcCcceEEEEEEeCCCcccCHHHHH
Confidence 4444333322 3789999999999999999983 24699999999999887432 2 2455555
Q ss_pred HHHHHHHHHhcccccc
Q 001380 563 DLVEAALLFYGKKKLL 578 (1089)
Q Consensus 563 ~~l~~~l~~~~~~~~l 578 (1089)
+.|+. |+.....|..
T Consensus 158 r~l~a-LQ~~~~~~~~ 172 (219)
T d1xcca_ 158 RVLKS-LQLTYTTPVA 172 (219)
T ss_dssp HHHHH-HHHHHHSSEE
T ss_pred HHHHH-HHHHHhCCCC
Confidence 55544 3333333443
|
| >d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Plasmodium yoelii [TaxId: 5861]
Probab=99.62 E-value=6.5e-16 Score=153.41 Aligned_cols=133 Identities=17% Similarity=0.206 Sum_probs=107.9
Q ss_pred CCCCCccccC--CCCCceeecccccCC-CEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHH
Q 001380 429 IVPEFPAKLD--WLNTAPLQFRRDLKG-KVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLE 504 (1089)
Q Consensus 429 ~~P~f~~~~~--~~~g~~~~l~~~~~g-k~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~ 504 (1089)
+||||++... +.++++++| ++++| |+|||.|| +.||+.|..|++.+++.+++|++.|+.+||||. ++..
T Consensus 1 kAPdF~l~~~~gd~~~~~vsL-~d~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g~~vigIS~------D~~~ 73 (170)
T d2h01a1 1 QAPSFKAEAVFGDNTFGEVSL-SDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSV------DSKF 73 (170)
T ss_dssp BCCCCEEEEECTTSCEEEEEG-GGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEES------SCHH
T ss_pred CCCCeEeeeecCCCCccEEeh-HHHCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCCeeEecccC------CcHH
Confidence 4899997521 335668999 89988 89999999 899999999999999999999999999999985 5666
Q ss_pred HHHHHHHH-------cCCccceeecCChhHHHHhCCC-----ceeEEEEECCCCcEEEEecCCC----chhhHHHHHHHH
Q 001380 505 AIRNAVLR-------YGISHPVVNDGDMNLWRELGVN-----SWPTFAVVGPNGKLLAQLAGEG----HRKDLDDLVEAA 568 (1089)
Q Consensus 505 ~~~~~~~~-------~~~~~~v~~d~~~~l~~~~~v~-----~~Pt~~lid~~G~i~~~~~G~~----~~~~l~~~l~~~ 568 (1089)
..++|.++ .+++||++.|.++.+.+.||+. ..+++||||++|+|++.+.+.. +.+++.+.|+.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~~ygv~~~~~~~~R~tfiId~~G~I~~~~~~~~~~~~~~~eil~~l~~l 153 (170)
T d2h01a1 74 THLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDAL 153 (170)
T ss_dssp HHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHH
T ss_pred HHHhHhhhhhhhccccccCCceeEcCccHHHHHhCCccccccceeeeEEEcCCCeEEEEEEecCCCCCCHHHHHHHHHHh
Confidence 66777665 4588999999999999999983 4589999999999999875433 344455555543
|
| >d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.62 E-value=6.5e-16 Score=153.27 Aligned_cols=132 Identities=14% Similarity=0.118 Sum_probs=97.7
Q ss_pred CCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhc
Q 001380 424 RKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKD 502 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~ 502 (1089)
.++|+++|+|++. +.+|++++| ++++||++||+|| +.||+.|..+++.|++.+++ .++.+++|+. ++
T Consensus 17 p~iG~~aP~F~L~--~~~g~~v~L-~d~~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~---~g~~vv~Is~------d~ 84 (166)
T d1xvqa_ 17 PAVGSPAPAFTLT--GGDLGVISS-DQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA---SGATVLCVSK------DL 84 (166)
T ss_dssp CCTTSBCCCCEEE--CTTSCEEEG-GGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH---TTCEEEEEES------SC
T ss_pred CCCcCCCCCeEEE--CCCCCEEeh-HHhCCcEEEEEeeecccccccHHHHHHHhhhccc---cccccccccc------ch
Confidence 4689999999964 569999999 9999999999999 55888899999988766554 5789999985 46
Q ss_pred HHHHHHHHHHcCCcccee-ecCChhHHHHhCCC---------ceeEEEEECCCCcEEEEecCC--CchhhHHHHHHH
Q 001380 503 LEAIRNAVLRYGISHPVV-NDGDMNLWRELGVN---------SWPTFAVVGPNGKLLAQLAGE--GHRKDLDDLVEA 567 (1089)
Q Consensus 503 ~~~~~~~~~~~~~~~~v~-~d~~~~l~~~~~v~---------~~Pt~~lid~~G~i~~~~~G~--~~~~~l~~~l~~ 567 (1089)
....+++.+++++.++.+ .|....+.+.|++. ..|++||||++|+|++.+... ....+.++.++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~ra~fvID~~G~I~y~~~~~~~~~~~~~d~il~a 161 (166)
T d1xvqa_ 85 PFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAA 161 (166)
T ss_dssp HHHHTTCC------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHhCCcccccccchhHHHHHHhCeeeccCcccCceeeEEEEEeCCCEEEEEEEcCCCCCCCCHHHHHHH
Confidence 677888889999998764 46677888999874 247899999999999875432 222344444443
|
| >d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: NagD-like domain: Putative phosphatase SMU.1415c species: Streptococcus mutans [TaxId: 1309]
Probab=99.61 E-value=8.5e-17 Score=172.19 Aligned_cols=76 Identities=20% Similarity=0.258 Sum_probs=65.9
Q ss_pred cCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCCh-hhHHHHHHcCCeEEEEcCCC-CHHHHhh--cCCcEEecCcccCC
Q 001380 215 ADAFENLKPAPDIFLSASKILNVPTSECIVIEDAL-AGVQAAKAAQMRCIAVTTTL-SEERLKE--ASPSLIRKEIGSVS 290 (1089)
Q Consensus 215 ~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~-~~~~l~~--~~~d~vi~dl~el~ 290 (1089)
.+....+||+|.+|+.+++++|++|++|+||||++ +||++|+++||++|+|.+|. ..+++.. ..||++++++.|+.
T Consensus 173 ~~~~~~gKP~p~~~~~al~~l~i~~~~~~mIGDs~~~DI~gA~~aG~~si~V~~G~~~~~~~~~~~~~PD~vi~sl~e~~ 252 (253)
T d1wvia_ 173 VKPIIIGKPEAVIMNKALDRLGVKRHEAIMVGDNYLTDITAGIKNDIATLLVTTGFTKPEEVPALPIQPDFVLSSLAEWD 252 (253)
T ss_dssp CCCEECSTTSHHHHHHHHHHHTSCGGGEEEEESCTTTTHHHHHHTTCEEEEESSSSSCTTTGGGCSSCCSEEESCGGGCC
T ss_pred ceeEEeccCCcccceehhhhccccccceEEEcCChHHHHHHHHHCCCCEEEECCCCCCHHHHhhcCCCCCEEECCHHHcC
Confidence 34455679999999999999999999999999998 69999999999999999997 5555544 36899999999983
|
| >d1nnla_ c.108.1.4 (A:) Phosphoserine phosphatase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Phosphoserine phosphatase domain: Phosphoserine phosphatase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=6.9e-16 Score=160.75 Aligned_cols=192 Identities=15% Similarity=0.173 Sum_probs=118.6
Q ss_pred CCceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 001380 77 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLD 156 (1089)
Q Consensus 77 ~~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1089)
...++|+|||||||++.+ .+.++.+.+|......+++.....+...+.+.+..+.........+. .+.+.+
T Consensus 8 ~~~~aV~FD~DGTLi~~e-----~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 78 (217)
T d1nnla_ 8 YSADAVCFDVDSTVIREE-----GIDELAKICGVEDAVSEMTRRAMGGAVPFKAALTERLALIQPSREQV----QRLIAE 78 (217)
T ss_dssp HHCSEEEEETBTTTBSSC-----HHHHHHHHTTCTTTC------------CHHHHHHHHHHHHCCCHHHH----HHHHHH
T ss_pred CCCCEEEEcCccccCCcc-----HHHHHHHHcCChHHHHHHHHHHHcCCCCHHHHHHHHHHhcccchHHH----HHHHHh
Confidence 446899999999999986 46667777777644444433332222222222221111001011111 121111
Q ss_pred HhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEc--------CCc--------cC
Q 001380 157 KYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSA--------DAF--------EN 220 (1089)
Q Consensus 157 ~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~--------~~~--------~~ 220 (1089)
. ...++||+.+++++|+++|++++|+|++....++.+++.+|++ .. .+++. ... ..
T Consensus 79 ---~--~~~l~pg~~~~i~~lk~~G~~~~ivS~~~~~~v~~i~~~lgi~-~~--~v~an~~~~~~~G~~~g~~~~~p~~~ 150 (217)
T d1nnla_ 79 ---Q--PPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNIP-AT--NVFANRLKFYFNGEYAGFDETQPTAE 150 (217)
T ss_dssp ---S--CCCBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCC-GG--GEEEECEEECTTSCEEEECTTSGGGS
T ss_pred ---h--ccccCHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhCCc-cc--ceeeeeeeeeehhccccceeeeeeec
Confidence 1 2368999999999999999999999999999999999999996 32 12111 001 11
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccC
Q 001380 221 LKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSV 289 (1089)
Q Consensus 221 ~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el 289 (1089)
.+.+....+...+++ ++++|++|||+.+|+.+++.+|+. +.+......+... ..++|++.+|.||
T Consensus 151 ~~~K~~~v~~~~~~~--~~~~~~~vGDs~~Di~~~~~ag~~-va~~~~~~~~~~~-~~ad~~i~~f~el 215 (217)
T d1nnla_ 151 SGGKGKVIKLLKEKF--HFKKIIMIGDGATDMEACPPADAF-IGFGGNVIRQQVK-DNAKWYITDFVEL 215 (217)
T ss_dssp TTHHHHHHHHHHHHH--CCSCEEEEESSHHHHTTTTTSSEE-EEECSSCCCHHHH-HHCSEEESCGGGG
T ss_pred cchHHHHHHHHHhcc--CccccEEEEeCHhhHHHHHhCCce-EEECCCHHHHHHH-HhCCCEeCCHHHh
Confidence 233455666665554 468999999999999999999964 4554332333433 4689999999887
|
| >d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Haemophilus influenzae [TaxId: 727]
Probab=99.60 E-value=1.1e-15 Score=151.05 Aligned_cols=121 Identities=18% Similarity=0.164 Sum_probs=101.2
Q ss_pred CCCCCCCCCCccccCCCCCceeecccccCCCEEEEEEe-cCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhc
Q 001380 424 RKTTPIVPEFPAKLDWLNTAPLQFRRDLKGKVVVLDFW-TYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKD 502 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~ 502 (1089)
.++|+++|+|++. +.+|+.++| ++++||++||+|| +.||+.|..|++.|++.+++|+ ++.+++||. ++
T Consensus 16 p~vG~~APdF~L~--d~~g~~v~L-sd~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~--~~~vi~iS~------d~ 84 (164)
T d1q98a_ 16 PQVGEIVENFILV--GNDLADVAL-NDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS--NTIVLCISA------DL 84 (164)
T ss_dssp CCTTCBCCCCEEE--CTTSCEEEG-GGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST--TEEEEEEES------SC
T ss_pred CCCCCCCCCcEEE--CCCCCEEee-hhhCCcEEEEEecCccccCcccHHHHHHHHHHHHhc--cceEEeecC------Cc
Confidence 5799999999964 569999999 8999999999999 5588889999999999999996 589999985 67
Q ss_pred HHHHHHHHHHcCCccc-eeec-CChhHHHHhCCC---------ceeEEEEECCCCcEEEEecCC
Q 001380 503 LEAIRNAVLRYGISHP-VVND-GDMNLWRELGVN---------SWPTFAVVGPNGKLLAQLAGE 555 (1089)
Q Consensus 503 ~~~~~~~~~~~~~~~~-v~~d-~~~~l~~~~~v~---------~~Pt~~lid~~G~i~~~~~G~ 555 (1089)
++..++|.+++++.+. .+.| .+..+++.|++. ..|++||||++|+|++.....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~Ra~fvID~~G~I~y~~~~~ 148 (164)
T d1q98a_ 85 PFAQARFCGAEGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQLVE 148 (164)
T ss_dssp HHHHTTCTTTTTCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEECS
T ss_pred HHHHHHHHHHhCCccccccccccchhHHHhhceecccCccccCcccEEEEECCCCEEEEEEECC
Confidence 7788889999999854 3333 467889999873 238999999999999986543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.58 E-value=1.5e-12 Score=140.64 Aligned_cols=227 Identities=21% Similarity=0.345 Sum_probs=178.2
Q ss_pred eEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEE
Q 001380 614 RLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVR 692 (1089)
Q Consensus 614 ~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~ 692 (1089)
.+||++...++|.++|.+ ++++.++..+ ..|++++++|+|++|||++..++.|+.+|+.++...
T Consensus 3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~~g---------------~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~ 67 (301)
T d1l0qa2 3 FAYIANSESDNISVIDVTSNKVTATIPVG---------------SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI 67 (301)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECS---------------SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEE
T ss_pred EEEEEECCCCEEEEEECCCCeEEEEEECC---------------CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcee
Confidence 689999999999999976 7777777654 268999999999999999999999999999887654
Q ss_pred EEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccc
Q 001380 693 TLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSF 772 (1089)
Q Consensus 693 ~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~ 772 (1089)
.....+ ..|.+++++++++.++++......+..++..++....... ..
T Consensus 68 ~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~ 115 (301)
T d1l0qa2 68 ATVPAG-----------------SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK---------------TG 115 (301)
T ss_dssp EEEECS-----------------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---------------CS
T ss_pred eeeecc-----------------ccccccccccccccccccccccceeeecccccceeeeecc---------------cc
Confidence 433222 2689999999999999999999999999998887555432 12
Q ss_pred cCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCC-cEE
Q 001380 773 AQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNG-QIY 851 (1089)
Q Consensus 773 ~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G-~ly 851 (1089)
..|..++++++|+.++++......+..++..++........ ...|..+++.+++ .+|
T Consensus 116 ~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~ 173 (301)
T d1l0qa2 116 KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV----------------------GRSPKGIAVTPDGTKVY 173 (301)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC----------------------CSSEEEEEECTTSSEEE
T ss_pred ccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc----------------------CCCceEEEeecccccee
Confidence 35788999999999999999889999998876544322211 2368899999887 589
Q ss_pred EEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEEEE--CCCCEEEEEeCCCC
Q 001380 852 VADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIAD--TNNNIIRYLDLNKE 923 (1089)
Q Consensus 852 VaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad--~~n~~I~~~~~~~~ 923 (1089)
++....+.+...+.....+...... -..|.+++++++|+ +|++. ...++|.++++.+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~ 234 (301)
T d1l0qa2 174 VANFDSMSISVIDTVTNSVIDTVKV--------------EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEEC--------------SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred eecccccccccccccceeeeecccc--------------cCCcceeeccccccccccccccceeeeeeeeecCCC
Confidence 9998888888888777666554322 23488999998885 77765 44578999999876
|
| >d1vjra_ c.108.1.14 (A:) Hypothetical protein TM1742 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: NagD-like domain: Hypothetical protein TM1742 species: Thermotoga maritima [TaxId: 2336]
Probab=99.57 E-value=1.3e-15 Score=163.75 Aligned_cols=76 Identities=25% Similarity=0.363 Sum_probs=66.7
Q ss_pred ccCCCCCHHHHHHHHHHcCCCCCcEEEEcCCh-hhHHHHHHcCCeEEEEcCCC-CHHHHhh--cCCcEEecCcccCCHHH
Q 001380 218 FENLKPAPDIFLSASKILNVPTSECIVIEDAL-AGVQAAKAAQMRCIAVTTTL-SEERLKE--ASPSLIRKEIGSVSLND 293 (1089)
Q Consensus 218 ~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~-~~~~l~~--~~~d~vi~dl~el~i~~ 293 (1089)
...+||+|.+|..+++++|++|++|+||||++ +||.+|+++||++|||.+|. ..+++.. ..|||+++++.|| .+
T Consensus 181 ~~~~KP~p~~~~~a~~~l~~~~~~~lmVGD~~~~DI~ga~~aG~~si~V~~G~~~~~~~~~~~~~PD~ii~~l~eL--~~ 258 (261)
T d1vjra_ 181 LIAGKPNPLVVDVISEKFGVPKERMAMVGDRLYTDVKLGKNAGIVSILVLTGETTPEDLERAETKPDFVFKNLGEL--AK 258 (261)
T ss_dssp EECSTTSTHHHHHHHHHHTCCGGGEEEEESCHHHHHHHHHHHTCEEEEESSSSCCHHHHHHCSSCCSEEESSHHHH--HH
T ss_pred cccCCCcHHHHHHHHhhhccCchhcceecCChhHHHHHHHHCCCcEEEECCCCCCHHHHhhcCCCCCEEECCHHHH--HH
Confidence 45589999999999999999999999999997 79999999999999999997 5665554 4689999999887 55
Q ss_pred HH
Q 001380 294 IL 295 (1089)
Q Consensus 294 ll 295 (1089)
+|
T Consensus 259 ~l 260 (261)
T d1vjra_ 259 AV 260 (261)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
| >d2feaa1 c.108.1.20 (A:2-227) 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: MtnX-like domain: 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX species: Bacillus subtilis [TaxId: 1423]
Probab=99.57 E-value=3e-15 Score=156.88 Aligned_cols=192 Identities=14% Similarity=0.096 Sum_probs=122.6
Q ss_pred ceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHh
Q 001380 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDKY 158 (1089)
Q Consensus 79 ~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (1089)
..+|+|||||||++++ .+..+++.++.+. ..++..........+...+..+..... ......+...+...
T Consensus 4 k~lVifD~DGTL~~~d-----~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~- 73 (226)
T d2feaa1 4 KPFIICDFDGTITMND-----NIINIMKTFAPPE-WMALKDGVLSKTLSIKEGVGRMFGLLP---SSLKEEITSFVLED- 73 (226)
T ss_dssp CEEEEECCTTTTBSSC-----HHHHHHHHHSCTH-HHHHHHHHHTTSSCHHHHHHHHHTTSB---GGGHHHHHHHHHHH-
T ss_pred CeEEEEeCCCCCcCch-----HHHHHHHHHCcch-HHHHHHHHHcCcccHHHHHHHHHHHhc---cccHHHHHHHHHhc-
Confidence 4689999999999876 3445556665442 122221111111111112222222111 11122222222222
Q ss_pred cCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccE---EEEcC----------CccCCCCCH
Q 001380 159 AKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDA---IVSAD----------AFENLKPAP 225 (1089)
Q Consensus 159 ~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~---i~~~~----------~~~~~KP~~ 225 (1089)
.+++||+.++++.|+++|++++|+|++.+..++.+++++++. .+|.. .+..+ .....++++
T Consensus 74 -----~~l~pg~~~~l~~L~~~g~~~~ivS~~~~~~i~~~l~~l~~~-~~~~an~~~~~~~~~~~~~~~~~~~~~~~~k~ 147 (226)
T d2feaa1 74 -----AKIREGFREFVAFINEHEIPFYVISGGMDFFVYPLLEGIVEK-DRIYCNHASFDNDYIHIDWPHSCKGTCSNQCG 147 (226)
T ss_dssp -----CCBCTTHHHHHHHHHHHTCCEEEEEEEEHHHHHHHHTTTSCG-GGEEEEEEECSSSBCEEECTTCCCTTCCSCCS
T ss_pred -----cchhHHHHHHHHHHHhcccccccCCcchhhhHHHHHHHcCCc-cceeeeeEEEeCCcceeccccccccccccCCH
Confidence 268999999999999999999999999999999999999985 66522 11111 122357888
Q ss_pred HHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcC-CcEEecCcccC
Q 001380 226 DIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEAS-PSLIRKEIGSV 289 (1089)
Q Consensus 226 ~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~-~d~vi~dl~el 289 (1089)
..+..+++++++++++++||||+.+|+.||++||+. +..+...+...+.+ +...+.||.++
T Consensus 148 ~~~~~~~~~~~~~~~~~i~iGDs~~Dl~~a~~A~~~---~a~~~~~~~~~~~~~~~~~~~d~~~i 209 (226)
T d2feaa1 148 CCKPSVIHELSEPNQYIIMIGDSVTDVEAAKLSDLC---FARDYLLNECREQNLNHLPYQDFYEI 209 (226)
T ss_dssp SCHHHHHHHHCCTTCEEEEEECCGGGHHHHHTCSEE---EECHHHHHHHHHTTCCEECCSSHHHH
T ss_pred HHHHHHHHHhcCCCceEEEEeCchhhHHHHHHCCEE---EEecchHHHHHHcCCCeeecCCHHHH
Confidence 899999999999999999999999999999999953 33332233444433 44556777776
|
| >d1yv9a1 c.108.1.14 (A:4-256) Putative hydrolase EF1188 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: NagD-like domain: Putative hydrolase EF1188 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.54 E-value=1.7e-14 Score=153.92 Aligned_cols=78 Identities=15% Similarity=0.232 Sum_probs=66.7
Q ss_pred EEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCCh-hhHHHHHHcCCeEEEEcCCC-CHHHHhh--cCCcEEecCccc
Q 001380 213 VSADAFENLKPAPDIFLSASKILNVPTSECIVIEDAL-AGVQAAKAAQMRCIAVTTTL-SEERLKE--ASPSLIRKEIGS 288 (1089)
Q Consensus 213 ~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~-~Di~aA~~aG~~~i~V~~g~-~~~~l~~--~~~d~vi~dl~e 288 (1089)
.+.+....+||++++|.++++++|++|++|+||||++ +||++|+++||++++|.+|. ..+++.+ ..||++++++.|
T Consensus 171 ~~~~~~~~~KP~~~~~~~~~~~~gi~~~~~l~IGD~~~~DI~~a~~aG~~si~V~~G~~~~~~~~~~~~~Pd~vi~sl~e 250 (253)
T d1yv9a1 171 TQTKPVYIGKPKAIIMERAIAHLGVEKEQVIMVGDNYETDIQSGIQNGIDSLLVTSGFTPKSAVPTLPTPPTYVVDSLDE 250 (253)
T ss_dssp HTCCCEECSTTSHHHHHHHHHHHCSCGGGEEEEESCTTTHHHHHHHHTCEEEEETTSSSCSSSTTTCSSCCSEEESSGGG
T ss_pred ccceeeeecccchhHHHHHHHHhCCCccceEEecCChHHHHHHHHHCCCCEEEECCCCCCHHHHHhcCCCCCEEECCHHH
Confidence 3445566789999999999999999999999999998 79999999999999999987 3443333 358999999999
Q ss_pred CC
Q 001380 289 VS 290 (1089)
Q Consensus 289 l~ 290 (1089)
++
T Consensus 251 ~~ 252 (253)
T d1yv9a1 251 WT 252 (253)
T ss_dssp CC
T ss_pred cC
Confidence 84
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.53 E-value=3.5e-13 Score=147.00 Aligned_cols=204 Identities=12% Similarity=0.143 Sum_probs=152.0
Q ss_pred ceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcE
Q 001380 660 QGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQ 739 (1089)
Q Consensus 660 ~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~ 739 (1089)
.|..+++.++.||++|..+++|+++|++++..+.+.-. ..|.++++.++| .||++.. +.
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~------------------~~~~~i~~~~dg-~l~va~~--~g 79 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKTVHALP------------------FMGSALAKISDS-KQLIASD--DG 79 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECS------------------SCEEEEEEEETT-EEEEEET--TE
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEECC------------------CCcEEEEEecCC-CEEEEEe--Cc
Confidence 57788887777999999999999999999998877521 157789998876 8888864 68
Q ss_pred EEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCC------CCeEEEEEcCCCCeEEEecC
Q 001380 740 IWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSE------SSSIRALNLKTGGSRLLAGG 813 (1089)
Q Consensus 740 I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~------~~~I~~~~~~~~~~~~~~g~ 813 (1089)
|..+|+.++..+.+..... ......|+++.++++| ++|+++.. .+.++++. .+.++.+..
T Consensus 80 l~~~d~~tg~~~~l~~~~~----------~~~~~~~nd~~vd~~G-~iw~~~~~~~~~~~~g~l~~~~--~g~~~~~~~- 145 (295)
T d2ghsa1 80 LFLRDTATGVLTLHAELES----------DLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA- 145 (295)
T ss_dssp EEEEETTTCCEEEEECSST----------TCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE-
T ss_pred cEEeecccceeeEEeeeec----------CCCcccceeeEECCCC-CEEEEeccccccccceeEeeec--CCcEEEEee-
Confidence 9999999999888763210 1234568999999999 89999753 23455553 344443322
Q ss_pred CCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEEEeCCCCEEEEEeCCC--Ce----EEEEeccCCCCCCCCcc
Q 001380 814 DPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADSYNHKIKKLDPAS--NR----VSTLAGIGKAGFKDGAA 886 (1089)
Q Consensus 814 ~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~~n~~I~~~d~~~--~~----v~t~~g~g~~g~~~g~~ 886 (1089)
.+..|.|++++++++ +|++|+.+++|.+++.+. +. ...+...
T Consensus 146 ---------------------~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~---------- 194 (295)
T d2ghsa1 146 ---------------------DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDS---------- 194 (295)
T ss_dssp ---------------------EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEEC----------
T ss_pred ---------------------ccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEecc----------
Confidence 156799999999885 999999999999987532 11 1111111
Q ss_pred cccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCCCceEEEEee
Q 001380 887 LAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKEEPELQTLEL 932 (1089)
Q Consensus 887 ~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~~~~~~~l~~ 932 (1089)
......|.|+++|.+|+||||....++|.+|+++++ .+..+..
T Consensus 195 -~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~--~~~~i~l 237 (295)
T d2ghsa1 195 -TGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGN--HIARYEV 237 (295)
T ss_dssp -TTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCC--EEEEEEC
T ss_pred -CcccccccceEEcCCCCEEeeeeCCCceEEecCCCc--EeeEecC
Confidence 012345999999999999999999999999999887 6666653
|
| >d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=4.7e-14 Score=138.98 Aligned_cols=136 Identities=15% Similarity=0.179 Sum_probs=107.6
Q ss_pred CCccccCCCCCceeecccccCCCEEEEEEecCCCcc-hhhhhhhHHHHHHHcCC----CCEEEEEEeCCCCCChhcHHHH
Q 001380 432 EFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCIN-CMHVLPDLEFLEKKYKD----MPFTVVGVHSAKFDNEKDLEAI 506 (1089)
Q Consensus 432 ~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~-C~~~~p~l~~l~~~~~~----~~v~vi~v~~~~~~~~~~~~~~ 506 (1089)
||+++ +.+|+++++ ++++||++||+||++||+. |..+++.++++.+++.+ ..+.++.++.. +..+..+..
T Consensus 2 dF~L~--d~~G~~vsl-~d~~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 76 (160)
T d1wp0a1 2 PFSLT--THTGERKTD-KDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISID--PERDTKEAI 76 (160)
T ss_dssp CCEEE--ETTSCEEEG-GGGTTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESC--TTTCCHHHH
T ss_pred CeEEE--cCCCCEEcH-HHhCCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccC--CCcccHHHH
Confidence 57754 559999999 9999999999999999985 99999999999887642 24566666542 334677888
Q ss_pred HHHHHHcCCccceeecCCh---hHHHHhCCCc---------------eeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 507 RNAVLRYGISHPVVNDGDM---NLWRELGVNS---------------WPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 507 ~~~~~~~~~~~~v~~d~~~---~l~~~~~v~~---------------~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
.++....+.+|..+.+... .+++.|++.. .+++||||++|+|+..+.+..+++++.+.|+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~~~~~~~~i~~~I~~~ 156 (160)
T d1wp0a1 77 ANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATH 156 (160)
T ss_dssp HHHHHTTCTTCEEEECCHHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHH
T ss_pred HHHHhhcCCCcccccCchHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 8999999999877765533 4667777543 358899999999999998888899999999888
Q ss_pred HHHh
Q 001380 569 LLFY 572 (1089)
Q Consensus 569 l~~~ 572 (1089)
|++|
T Consensus 157 lk~~ 160 (160)
T d1wp0a1 157 MRPY 160 (160)
T ss_dssp HTTC
T ss_pred HhcC
Confidence 8754
|
| >d1j97a_ c.108.1.4 (A:) Phosphoserine phosphatase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Phosphoserine phosphatase domain: Phosphoserine phosphatase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.47 E-value=6.9e-14 Score=143.95 Aligned_cols=185 Identities=23% Similarity=0.221 Sum_probs=126.1
Q ss_pred CceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhc---CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 001380 78 KVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFM---GTGEANFLGGVASVKGVKGFDSEAAKKRFFEIY 154 (1089)
Q Consensus 78 ~~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (1089)
+.|+|+||+||||++++ ++..+++++|+......+.... .............. ... .... ..
T Consensus 3 kkKlv~FDlDGTL~d~e-----s~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~-------~~ 67 (210)
T d1j97a_ 3 KKKLILFDFDSTLVNNE-----TIDEIAREAGVEEEVKKITKEAMEGKLNFEQSLRKRVSL--LKD-LPIE-------KV 67 (210)
T ss_dssp CCCEEEECCCCCCBSSC-----HHHHHHHHTTCHHHHHHHHHHHHTTSSCHHHHHHHHHHT--TTT-CBHH-------HH
T ss_pred CCeEEEEeCCCCcCCch-----HHHHHHHHcCCcHHHHHHHHHHhcccchhHHHHHHHHHH--Hhh-hHHH-------HH
Confidence 46999999999999987 4666777777643222221111 11111111111111 111 1111 11
Q ss_pred HHHhcCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCC----------ccCCCCC
Q 001380 155 LDKYAKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADA----------FENLKPA 224 (1089)
Q Consensus 155 ~~~~~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~----------~~~~KP~ 224 (1089)
...+. ...+++|+.++++.++.+|..++++|+.....+....++.+.. .++...+..++ ...++++
T Consensus 68 ~~~~~---~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (210)
T d1j97a_ 68 EKAIK---RITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLD-YAFANRLIVKDGKLTGDVEGEVLKENAK 143 (210)
T ss_dssp HHHHH---TCCBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCS-EEEEEEEEEETTEEEEEEECSSCSTTHH
T ss_pred HHHhh---hhhhhhhHHHHHHHHHHcCCEEEeecccccccccchhhccchh-hhhhhhhccccccccccccccccccccc
Confidence 11111 1278999999999999999999999999999999999999886 66654444332 3346778
Q ss_pred HHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCc
Q 001380 225 PDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEI 286 (1089)
Q Consensus 225 ~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl 286 (1089)
+..+...++++++.++++++|||+.+|+.|++.||+. +.++ ..+.+++ .+++++++.
T Consensus 144 ~~~~~~~~~~~~~~~~~~i~iGDs~nDi~m~~~ag~~-va~n---a~~~lk~-~Ad~vi~~~ 200 (210)
T d1j97a_ 144 GEILEKIAKIEGINLEDTVAVGDGANDISMFKKAGLK-IAFC---AKPILKE-KADICIEKR 200 (210)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEESSGGGHHHHHHCSEE-EEES---CCHHHHT-TCSEEECSS
T ss_pred cchhhhHHHHhcccccceEEecCCcChHHHHHHCCCC-EEEC---CCHHHHH-hCCEEEcCC
Confidence 8999999999999999999999999999999999975 4442 3455554 699999865
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.47 E-value=1.6e-12 Score=146.23 Aligned_cols=284 Identities=9% Similarity=0.102 Sum_probs=170.9
Q ss_pred CCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC--CCC
Q 001380 602 FPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT--ENH 679 (1089)
Q Consensus 602 ~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~--~n~ 679 (1089)
.|..|++++.++.||+++.+.-..+.++.++......... .. ..|..++++++++.+||+.. .+.
T Consensus 41 ~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~-~~------------~~p~~v~~~~~~~~~~v~~a~~~~~ 107 (365)
T d1jofa_ 41 PISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHP-IG------------GHPRANDADTNTRAIFLLAAKQPPY 107 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEE-CC------------SSGGGGCTTSCCEEEEEEECSSTTC
T ss_pred CCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeec-CC------------CCcEEEEECCCCCEEEEEEecCCCC
Confidence 4567999998889999987665666677777766543322 11 26899999999987888654 345
Q ss_pred EEEEEEC--CCCeEEEE--ecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECC-CCeEEEEe
Q 001380 680 ALREIDF--VNDTVRTL--AGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTV-DGVTRAFS 754 (1089)
Q Consensus 680 ~I~~~d~--~~g~v~~~--ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~-~g~~~~~~ 754 (1089)
.|..+.. .++....+ ...+..... ......+.-..|++++++|+|+++|+++.+.++|+.|+.. ++......
T Consensus 108 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~ 184 (365)
T d1jofa_ 108 AVYANPFYKFAGYGNVFSVSETGKLEKN---VQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVG 184 (365)
T ss_dssp CEEEEEESSSCCEEEEEEECTTCCEEEE---EEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEE
T ss_pred EEEEeEccCCCCcceeEeeeecceecCc---ccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeecc
Confidence 5554432 22322222 111111000 0001112234789999999999999999999999988643 33333222
Q ss_pred CCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEe--cCCCCCCCCccccCCCCCccc
Q 001380 755 GDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLA--GGDPIFPDNLFKFGDRDGMGS 832 (1089)
Q Consensus 755 g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~--g~~~~~~~~l~~~g~~dg~~~ 832 (1089)
..-. ...-..|.+++++++|+.+|+++..+++|..++.+++....+. +..+..+... . ......
T Consensus 185 ~~~~----------~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~ 250 (365)
T d1jofa_ 185 SVDA----------PDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI---P-DRDPET 250 (365)
T ss_dssp EEEC----------SSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC---C-CBCTTT
T ss_pred ceee----------cCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccc---c-cccccc
Confidence 1000 0112369999999999999999999999999988755432111 1000000000 0 000011
Q ss_pred cccccCceEEEEccCC-cEEEEeCCCC-----EEEEEeC-CCCeEEEEeccCCCCCCCCcccccccCCCceEEEcc-CCc
Q 001380 833 EVLLQHPLGVYCAKNG-QIYVADSYNH-----KIKKLDP-ASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQ-NGN 904 (1089)
Q Consensus 833 ~~~l~~P~gva~~~~G-~lyVaD~~n~-----~I~~~d~-~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~-~G~ 904 (1089)
......|..++++++| .+|+++.+.+ .|..++. ..+.+......... ...-..|.++++++ +|+
T Consensus 251 ~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~--------~~~G~~p~~i~~~p~~G~ 322 (365)
T d1jofa_ 251 GKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT--------PTSGGHSNAVSPCPWSDE 322 (365)
T ss_dssp SSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC--------SSCCTTCCCEEECTTCTT
T ss_pred ccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE--------EcCCCCccEEEecCCCCC
Confidence 1123457889999999 5999975433 2544432 22333322111000 01225699999986 676
Q ss_pred -EEEEECCCCEEEEEeCCCC
Q 001380 905 -LFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 905 -lyVad~~n~~I~~~~~~~~ 923 (1089)
|||++...+.|.+++.++.
T Consensus 323 ~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 323 WMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEECSSSCEEEEEEEETT
T ss_pred EEEEEeCCCCeEEEEEEeCC
Confidence 9999999999999998776
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=1e-11 Score=136.24 Aligned_cols=269 Identities=12% Similarity=0.101 Sum_probs=177.3
Q ss_pred CCCceEEEeecCCeEEEEeCCCCEEEEEeCC--CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCC
Q 001380 601 KFPGKLAIDILNNRLFISDSNHNRIVVTDLD--GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTEN 678 (1089)
Q Consensus 601 ~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~--g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n 678 (1089)
..|.+|+++|++..||++....++|.+++.+ +.....+... . .-..|.+|+++|+|++||+++..+
T Consensus 37 ~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~-~-----------~~~~p~~l~~spDg~~l~v~~~~~ 104 (333)
T d1ri6a_ 37 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES-A-----------LPGSLTHISTDHQGQFVFVGSYNA 104 (333)
T ss_dssp SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE-E-----------CSSCCSEEEECTTSSEEEEEETTT
T ss_pred CCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeec-c-----------cCCCceEEEEcCCCCEEeecccCC
Confidence 4577899999777899999988998887654 3333332221 1 123689999999999999999989
Q ss_pred CEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCc
Q 001380 679 HALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGY 758 (1089)
Q Consensus 679 ~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~ 758 (1089)
..|+.++.............. .-..|++++++++++.+|+++.....|+.++..............
T Consensus 105 ~~v~~~~~~~~~~~~~~~~~~--------------~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (333)
T d1ri6a_ 105 GNVSVTRLEDGLPVGVVDVVE--------------GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAE 170 (333)
T ss_dssp TEEEEEEEETTEEEEEEEEEC--------------CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE
T ss_pred CceeeeccccccceecccccC--------------CCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeecee
Confidence 999988877665544432111 123688999999999999999999999888866543222111110
Q ss_pred cccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCC--eEEEecCCCCCCCCccccCCCCCccccccc
Q 001380 759 ERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGG--SRLLAGGDPIFPDNLFKFGDRDGMGSEVLL 836 (1089)
Q Consensus 759 ~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~--~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l 836 (1089)
.. ......|..+++++++..+|+++...+........... ....... . .........
T Consensus 171 ~~--------~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------~--~~~~~~~~~ 229 (333)
T d1ri6a_ 171 VT--------TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTL-----------D--MMPENFSDT 229 (333)
T ss_dssp EE--------CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEE-----------E--CSCTTCCSC
T ss_pred ee--------eecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeee-----------e--eeecCCCcc
Confidence 00 12235688999999999999999888877666644221 1111000 0 000011123
Q ss_pred cCceEEEEccCCc-EEEEeCCCCEEEEEe--CCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEEEECCC
Q 001380 837 QHPLGVYCAKNGQ-IYVADSYNHKIKKLD--PASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADTNN 912 (1089)
Q Consensus 837 ~~P~gva~~~~G~-lyVaD~~n~~I~~~d--~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~~n 912 (1089)
..|.+++++++|+ +|++....+.+..++ ..++...... ... .-..|.+++++++|+ |||++...
T Consensus 230 ~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----------~~~~p~~~a~spDGk~l~va~~~~ 297 (333)
T d1ri6a_ 230 RWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEG-FQP-----------TETQPRGFNVDHSGKYLIAAGQKS 297 (333)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEE-EEE-----------CSSSCCCEEECTTSSEEEEECTTT
T ss_pred ccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEE-EeC-----------CCCCeeEEEEeCCCCEEEEEECCC
Confidence 4688899999985 888888888777654 4444333322 111 124599999999997 89999988
Q ss_pred CEEEEEeCCCCCceEE
Q 001380 913 NIIRYLDLNKEEPELQ 928 (1089)
Q Consensus 913 ~~I~~~~~~~~~~~~~ 928 (1089)
+.|++++.+..+..++
T Consensus 298 ~~v~v~~id~~tG~l~ 313 (333)
T d1ri6a_ 298 HHISVYEIVGEQGLLH 313 (333)
T ss_dssp CEEEEEEEETTTTEEE
T ss_pred CeEEEEEEECCCCcEE
Confidence 9999886654432443
|
| >d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.44 E-value=1.5e-13 Score=126.28 Aligned_cols=89 Identities=33% Similarity=0.553 Sum_probs=75.8
Q ss_pred cccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHH
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLW 528 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~ 528 (1089)
.+..||+|||+|||+||++|+.+.|.+++++++|++. +.++.|.. |....++
T Consensus 21 ~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~-~~~~~i~~---------------------------d~~~~l~ 72 (111)
T d1xwaa_ 21 TKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN-VVVLKVDV---------------------------DECEDIA 72 (111)
T ss_dssp HHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-EEEEEEET---------------------------TTCHHHH
T ss_pred HhcCCCEEEEEEECCcccCccccchhHHHHhhhcccc-eEEEEEEe---------------------------ecCcchh
Confidence 4457899999999999999999999999999999865 77788854 5567899
Q ss_pred HHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHH
Q 001380 529 RELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEA 567 (1089)
Q Consensus 529 ~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~ 567 (1089)
++|+|.++||++++ ++|+.+.++.|. ..++++++|++
T Consensus 73 ~~~~V~~~Pt~~~~-~~G~~v~~~~G~-~~~~l~~~I~~ 109 (111)
T d1xwaa_ 73 MEYNISSMPTFVFL-KNGVKVEEFAGA-NAKRLEDVIKA 109 (111)
T ss_dssp HHTTCCSSSEEEEE-ETTEEEEEEESC-CHHHHHHHHHH
T ss_pred hcCCCccccEEEEE-ECCEEEEEEeCC-CHHHHHHHHHh
Confidence 99999999999999 899999999986 44667766654
|
| >d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]
Probab=99.44 E-value=5.1e-14 Score=128.08 Aligned_cols=89 Identities=27% Similarity=0.445 Sum_probs=79.5
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+|++||+|||+||++|+.+.|.+.++.++|+++ +.++.|.+ |....++++|
T Consensus 16 ~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~-~~~~~vd~---------------------------~~~~~~~~~~ 67 (105)
T d1nw2a_ 16 GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK-VTVAKLNV---------------------------DENPETTSQF 67 (105)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-CEEEEEET---------------------------TTCHHHHHHT
T ss_pred CCCcEEEEEECCCCCCcccccchhhhhhhhcCCc-eEEEEEEC---------------------------CCCcccHHHC
Confidence 4689999999999999999999999999999864 88888854 5677899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
+|.++||++++ ++|+.+.++.|..+.+++.++|+++|
T Consensus 68 ~V~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~i~~~L 104 (105)
T d1nw2a_ 68 GIMSIPTLILF-KGGEPVKQLIGYQPKEQLEAQLADVL 104 (105)
T ss_dssp TCCBSSEEEEE-ETTEEEEEEESCCCHHHHHHHTTTTC
T ss_pred CcceeeEEEEE-ECCEEEEEEECCCCHHHHHHHHHHHh
Confidence 99999999999 79999999999999999988877654
|
| >d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.43 E-value=1.7e-13 Score=125.00 Aligned_cols=89 Identities=28% Similarity=0.471 Sum_probs=79.0
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+|+|||+|||+||++|+.+.|.+.++.+++.+. +.++.|.+ |....++++|
T Consensus 18 s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~-~~~~~vd~---------------------------d~~~~l~~~~ 69 (107)
T d1dbya_ 18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK-LKCVKLNT---------------------------DESPNVASEY 69 (107)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEET---------------------------TTCHHHHHHH
T ss_pred CCCcEEEEEECCCCCCccccChHHHHHHHhhccc-ceEEEEec---------------------------ccchhHHHHh
Confidence 4689999999999999999999999999998865 67777754 5677899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
+|+++||++++ ++|+.+.++.|..+.+.+.++|++.|
T Consensus 70 ~V~~~Pt~~~~-~~G~~v~~~~G~~~~~~l~~~i~~~L 106 (107)
T d1dbya_ 70 GIRSIPTIMVF-KGGKKCETIIGAVPKATIVQTVEKYL 106 (107)
T ss_dssp TCCSSCEEEEE-SSSSEEEEEESCCCHHHHHHHHHHHC
T ss_pred cccceEEEEEE-ECCeEEEEEeCCCCHHHHHHHHHHhh
Confidence 99999999999 58999999999999999999888764
|
| >d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=2.2e-13 Score=124.45 Aligned_cols=89 Identities=24% Similarity=0.485 Sum_probs=79.3
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+|+|||+|||+||++|+.+.|.+.++++++..+ +.++.+.+ |.+..+++.|
T Consensus 19 ~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~-~~~~~vd~---------------------------d~~~~l~~~~ 70 (108)
T d2trxa_ 19 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNI---------------------------DQNPGTAPKY 70 (108)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-EEEEEEET---------------------------TTCTTHHHHT
T ss_pred CCCcEEEEEECCCCCCccccCcHHHHHHHHhhcc-eeeeeccc---------------------------cchhhHHHHh
Confidence 4689999999999999999999999999988764 77887754 5567899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
+|.++||++++ ++|+.+.++.|..+.+.+.++|++.|
T Consensus 71 ~v~~~PT~~~~-~~G~~v~~~~G~~~~~~l~~~i~~~L 107 (108)
T d2trxa_ 71 GIRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANL 107 (108)
T ss_dssp TCCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CCCcEEEEEEE-ECCEEEEEEeCCCCHHHHHHHHHHhc
Confidence 99999999888 79999999999999999999998876
|
| >d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Anabaena sp., pcc 7120 [TaxId: 1167]
Probab=99.42 E-value=3.1e-13 Score=123.43 Aligned_cols=88 Identities=20% Similarity=0.395 Sum_probs=79.4
Q ss_pred CCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhC
Q 001380 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELG 532 (1089)
Q Consensus 453 gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~ 532 (1089)
+|++||+||++||++|+.+.|.+.++++++++. +.++.|.+ |.+..++++|+
T Consensus 20 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~vd~---------------------------d~~~~l~~~~~ 71 (108)
T d1thxa_ 20 EQPVLVYFWASWCGPCQLMSPLINLAANTYSDR-LKVVKLEI---------------------------DPNPTTVKKYK 71 (108)
T ss_dssp SSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT-CEEEEEES---------------------------TTCHHHHHHTT
T ss_pred CCcEEEEEECCCCCCccccchHHHHHHHhcCCc-ceeceecc---------------------------cccHHHHHHhc
Confidence 588999999999999999999999999999865 78888854 56778999999
Q ss_pred CCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 533 VNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 533 v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
|+++||++++ ++|+.+.++.|..+.+.+.++|++.|
T Consensus 72 I~~~Pt~~~~-~~g~~v~~~~G~~~~~~l~~~i~~~L 107 (108)
T d1thxa_ 72 VEGVPALRLV-KGEQILDSTEGVISKDKLLSFLDTHL 107 (108)
T ss_dssp CCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred ccCCCEEEEE-ECCEEEEEEeCCCCHHHHHHHHHHhc
Confidence 9999999999 58999999999999999999998866
|
| >d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Hypothetical protein MW1667 (SA1546) domain: Hypothetical protein MW1667 (SA1546) species: Staphylococcus aureus [TaxId: 1280]
Probab=99.42 E-value=1.5e-13 Score=154.99 Aligned_cols=130 Identities=20% Similarity=0.264 Sum_probs=112.1
Q ss_pred CCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccE--EEEcCC-----------ccCCCCCHHHHHHHH
Q 001380 166 GFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDA--IVSADA-----------FENLKPAPDIFLSAS 232 (1089)
Q Consensus 166 ~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~--i~~~~~-----------~~~~KP~~~~~~~~l 232 (1089)
++||+.++|+.|+++|++++++||..+..++.+++++|+. ++|+. +++.++ ....||+|++|..++
T Consensus 216 p~~~v~~~l~~lk~aGi~v~i~Tg~~~~~a~~il~~lgl~-~~F~~~~i~~~~d~~~~~~~~~~~~~~~KP~p~~~~~~~ 294 (380)
T d1qyia_ 216 PVDEVKVLLNDLKGAGFELGIATGRPYTETVVPFENLGLL-PYFEADFIATASDVLEAENMYPQARPLGKPNPFSYIAAL 294 (380)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCG-GGSCGGGEECHHHHHHHHHHSTTSCCCCTTSTHHHHHHH
T ss_pred chhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCc-ccCCcceEEecchhhhhhhhccccccccCCChHHHHHHH
Confidence 5679999999999999999999999999999999999996 88863 565543 356899999999988
Q ss_pred HHc--------------CCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCC----HHHHhhcCCcEEecCcccCCHHHH
Q 001380 233 KIL--------------NVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLS----EERLKEASPSLIRKEIGSVSLNDI 294 (1089)
Q Consensus 233 ~~l--------------gv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~----~~~l~~~~~d~vi~dl~el~i~~l 294 (1089)
..+ ++.+++|+||||+.+|+.+|++||+.+|+|.+|.. .+++.+.+||++++++.+| .++
T Consensus 295 ~~~~~~~~~k~~iv~~~~~~~~~~~~vGD~~~D~~aak~Ag~~~Igv~~G~~g~~~~~el~~~~AD~ii~~~~el--~~i 372 (380)
T d1qyia_ 295 YGNNRDKYESYINKQDNIVNKDDVFIVGDSLADLLSAQKIGATFIGTLTGLKGKDAAGELEAHHADYVINHLGEL--RGV 372 (380)
T ss_dssp HCCCGGGHHHHHHCCTTCSCTTTEEEEESSHHHHHHHHHHTCEEEEESCBTTBGGGHHHHHHTTCSEEESSGGGH--HHH
T ss_pred HHcCCCHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHCCCCEEEEecCCCCcccHHHHHhCCCCEEECCHHHH--HHH
Confidence 554 56789999999999999999999999999999862 4567778999999999998 677
Q ss_pred Hhcc
Q 001380 295 LTGG 298 (1089)
Q Consensus 295 l~~~ 298 (1089)
|..+
T Consensus 373 l~~l 376 (380)
T d1qyia_ 373 LDNL 376 (380)
T ss_dssp HSCT
T ss_pred HHHH
Confidence 6554
|
| >d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]
Probab=99.41 E-value=2.4e-13 Score=123.33 Aligned_cols=88 Identities=25% Similarity=0.433 Sum_probs=77.9
Q ss_pred CCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhC
Q 001380 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELG 532 (1089)
Q Consensus 453 gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~ 532 (1089)
+|++||+|||+||++|+.+.|.+.++.+++.+. +.++.|.. |.+..++++|+
T Consensus 17 ~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~-~~~~~v~~---------------------------d~~~~l~~~~~ 68 (104)
T d1fb6a_ 17 EVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK-IAVYKLNT---------------------------DEAPGIATQYN 68 (104)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEET---------------------------TTCHHHHHHTT
T ss_pred CCcEEEEEEcCccCCccccCchhHHHHHhhcCc-cceeEEec---------------------------ccchhhhhhcc
Confidence 578999999999999999999999999999875 56777754 56778999999
Q ss_pred CCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 533 VNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 533 v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
|+++||++++ ++|+.+.++.|..+.+.+.++|++.|
T Consensus 69 V~~~Pt~~~~-~~G~~v~~~~G~~~~~~l~~~i~~~L 104 (104)
T d1fb6a_ 69 IRSIPTVLFF-KNGERKESIIGAVPKSTLTDSIEKYL 104 (104)
T ss_dssp CCSSSEEEEE-ETTEEEEEEEECCCHHHHHHHHHHHC
T ss_pred eeeeeEEEEE-EcCeEEEEEeCCCCHHHHHHHHHHhC
Confidence 9999999998 79999999999999999999887653
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.39 E-value=3.9e-10 Score=123.09 Aligned_cols=261 Identities=11% Similarity=0.074 Sum_probs=168.0
Q ss_pred eEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEE
Q 001380 614 RLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVR 692 (1089)
Q Consensus 614 ~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~ 692 (1089)
+.+|+-+..++|.++|.. ++.+..+..... ...|.+++++|+|+++||+...++.|+++|..++++.
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~------------~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~ 69 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADA------------GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL 69 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTC------------TTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCC------------CCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEE
Confidence 356666667899999987 666777765422 2368999999999999999999999999999987765
Q ss_pred EEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC-----------CcEEEEEECCCCeEEEEeCCCcccc
Q 001380 693 TLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG-----------QHQIWEHSTVDGVTRAFSGDGYERN 761 (1089)
Q Consensus 693 ~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~-----------~~~I~~~~~~~g~~~~~~g~g~~~~ 761 (1089)
........ ......+++++++|+++.+|++... ...+..+|..++.+.....
T Consensus 70 ~~~~~~~~-----------~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~------ 132 (337)
T d1pbyb_ 70 GRIDLSTP-----------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE------ 132 (337)
T ss_dssp EEEECCBT-----------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE------
T ss_pred EEEecCCC-----------cccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc------
Confidence 54322211 1123478899999999999998652 3466777777776554431
Q ss_pred CCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCC------CCCcc--ccCCC------
Q 001380 762 LNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIF------PDNLF--KFGDR------ 827 (1089)
Q Consensus 762 ~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~------~~~l~--~~g~~------ 827 (1089)
....|++++++++|+.+|+++. .+..++..++............ +.... ..+..
T Consensus 133 ---------~~~~~~~~~~s~dg~~l~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (337)
T d1pbyb_ 133 ---------APRQITMLAWARDGSKLYGLGR---DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMAT 200 (337)
T ss_dssp ---------CCSSCCCEEECTTSSCEEEESS---SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEE
T ss_pred ---------ccCCceEEEEcCCCCEEEEEcC---CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeee
Confidence 1236889999999999999853 4566777665543222110000 00000 00000
Q ss_pred ---------------------------CCcccc----ccccCceEEEEccCCc-EEEEeCCCCEEEEEeCCCCeEEEEec
Q 001380 828 ---------------------------DGMGSE----VLLQHPLGVYCAKNGQ-IYVADSYNHKIKKLDPASNRVSTLAG 875 (1089)
Q Consensus 828 ---------------------------dg~~~~----~~l~~P~gva~~~~G~-lyVaD~~n~~I~~~d~~~~~v~t~~g 875 (1089)
.+.... ..-..+...++.+++. +|+++ +.|.++|..++.+.....
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~v~d~~~~~~~~~~~ 277 (337)
T d1pbyb_ 201 PFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY---NVLESFDLEKNASIKRVP 277 (337)
T ss_dssp EEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE---SEEEEEETTTTEEEEEEE
T ss_pred eeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEcc---ccEEEEECCCCcEEEEEc
Confidence 000000 0011234556666664 55554 689999998887655443
Q ss_pred cCCCCCCCCcccccccCCCceEEEccCCc-EEEEECCCCEEEEEeCCCCCceEEEEeecc
Q 001380 876 IGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADTNNNIIRYLDLNKEEPELQTLELKG 934 (1089)
Q Consensus 876 ~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~~n~~I~~~~~~~~~~~~~~l~~~~ 934 (1089)
.+ ..|.+++++++|+ ||++. .++.|.+++..+. ..+.++...|
T Consensus 278 ~~--------------~~~~~~~~s~dG~~l~v~~-~~~~i~v~D~~t~-~~v~~i~~~g 321 (337)
T d1pbyb_ 278 LP--------------HSYYSVNVSTDGSTVWLGG-ALGDLAAYDAETL-EKKGQVDLPG 321 (337)
T ss_dssp CS--------------SCCCEEEECTTSCEEEEES-BSSEEEEEETTTC-CEEEEEECGG
T ss_pred CC--------------CCEEEEEECCCCCEEEEEe-CCCcEEEEECCCC-cEEEEEECCC
Confidence 21 3489999999996 77765 5678999999876 3677777544
|
| >d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.37 E-value=7.4e-13 Score=121.96 Aligned_cols=87 Identities=24% Similarity=0.445 Sum_probs=75.4
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+|++||+|||+||++|+.+.|.|.++.++|++ +.++.|.. |....++++|
T Consensus 27 ~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~--~~~~~vd~---------------------------~~~~~l~~~~ 77 (114)
T d1xfla_ 27 SKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN--VLFLKVDT---------------------------DELKSVASDW 77 (114)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSS--EEEEEEET---------------------------TTSHHHHHHT
T ss_pred cCCeEEEEEEcCCCCCccccccchhhhcccccc--cceeEEEe---------------------------eeceeecccc
Confidence 479999999999999999999999999999874 77787754 5567899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
+|+++||++++ ++|+.+.++.|. ..++++++|++.|
T Consensus 78 ~V~~~Pt~~~~-~~G~~v~~~~G~-~~~~l~~~i~k~l 113 (114)
T d1xfla_ 78 AIQAMPTFMFL-KEGKILDKVVGA-KKDELQSTIAKHL 113 (114)
T ss_dssp TCCSSSEEEEE-ETTEEEEEEESC-CHHHHHHHHHHHC
T ss_pred ceeeeEEEEEE-ECCEEEEEEeCc-CHHHHHHHHHHhh
Confidence 99999999999 899999999985 6778888776654
|
| >d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Trypanosoma brucei [TaxId: 5691]
Probab=99.37 E-value=7.2e-13 Score=121.59 Aligned_cols=88 Identities=18% Similarity=0.303 Sum_probs=77.5
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.++++||+|||+||++|+.+.|.|.+++++++ ++.++.|.+ |...++++.|
T Consensus 25 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~---------------------------d~~~~l~~~~ 75 (113)
T d1r26a_ 25 EDILTVAWFTAVWCGPCKTIERPMEKIAYEFP--TVKFAKVDA---------------------------DNNSEIVSKC 75 (113)
T ss_dssp SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT--TSEEEEEET---------------------------TTCHHHHHHT
T ss_pred CCCeEEEEEECCCCccchhhceeccccccccc--ccccccccc---------------------------ccchhhHHHc
Confidence 56899999999999999999999999999996 578888854 5567899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
+|.++||++++ ++|+.+.++.|. ..+.+.+.|+++++
T Consensus 76 ~V~~~Pt~~~~-~~G~~v~~~~G~-~~~~l~~~l~~~ik 112 (113)
T d1r26a_ 76 RVLQLPTFIIA-RSGKMLGHVIGA-NPGMLRQKLRDIIK 112 (113)
T ss_dssp TCCSSSEEEEE-ETTEEEEEEESS-CHHHHHHHHHHHHH
T ss_pred cccCCCEEEEE-ECCEEEEEEeCC-CHHHHHHHHHHHhc
Confidence 99999999999 899999999995 57888888888775
|
| >d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=7.1e-13 Score=120.33 Aligned_cols=87 Identities=18% Similarity=0.321 Sum_probs=76.6
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+|++||+|||+||++|+.+.|.|.++.++|++ +.++.|.. |...++++.|
T Consensus 20 ~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~--~~f~~vd~---------------------------d~~~~l~~~~ 70 (107)
T d1gh2a_ 20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQ--AVFLEVDV---------------------------HQCQGTAATN 70 (107)
T ss_dssp TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTT--SEEEEEET---------------------------TTSHHHHHHT
T ss_pred CCCEEEEEEECCCCCCccccchhhhcccccccc--cccccccc---------------------------ccchhhhhhc
Confidence 478999999999999999999999999999874 67777754 5567899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
+|.++||++++ ++|+.+.++.|. +.+.+++.|++.|
T Consensus 71 ~v~~~Pt~~~~-~~G~~v~~~~G~-~~~~l~~~i~k~l 106 (107)
T d1gh2a_ 71 NISATPTFQFF-RNKVRIDQYQGA-DAVGLEEKIKQHL 106 (107)
T ss_dssp TCCSSSEEEEE-ETTEEEEEEESS-CHHHHHHHHHHHH
T ss_pred CceeceEEEEE-ECCEEEEEEeCC-CHHHHHHHHHHhh
Confidence 99999999999 899999999995 7888888887765
|
| >d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.36 E-value=8.3e-13 Score=121.14 Aligned_cols=88 Identities=26% Similarity=0.408 Sum_probs=76.1
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+|+|||+||++||++|+.+.|.+++++++++++ +.++.|++ |.+.+++++|
T Consensus 23 ~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~-v~~~~vd~---------------------------d~~~~l~~~~ 74 (112)
T d1ep7a_ 23 EHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGK-VIFLKVDV---------------------------DAVAAVAEAA 74 (112)
T ss_dssp HTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-SEEEEEET---------------------------TTTHHHHHHH
T ss_pred cCCeEEEEEEcCCcCCCcccchhhhhhhhcccce-EEEEEeec---------------------------cccccccccc
Confidence 5789999999999999999999999999999864 88888865 4567899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
+|.++||++++ ++|+.+.++.|. +.+++.++|++..
T Consensus 75 ~v~~~Pt~~~~-~~G~~v~~~~G~-~~~~l~~~i~k~~ 110 (112)
T d1ep7a_ 75 GITAMPTFHVY-KDGVKADDLVGA-SQDKLKALVAKHA 110 (112)
T ss_dssp TCCBSSEEEEE-ETTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred cccCCCEEEEE-ECCEEEEEEeCc-CHHHHHHHHHHHh
Confidence 99999999998 799999999995 6777777766543
|
| >d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Escherichia coli [TaxId: 562]
Probab=99.36 E-value=2.5e-13 Score=127.82 Aligned_cols=96 Identities=16% Similarity=0.121 Sum_probs=84.9
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+++|||+|||+||++|+.+.|.|.++.++|++..+.+.-|.+ |.+.++++.|
T Consensus 35 ~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~---------------------------d~~~~la~~~ 87 (132)
T d2hfda1 35 PDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADL---------------------------EQSEAIGDRF 87 (132)
T ss_dssp SEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECH---------------------------HHHHHHHHHH
T ss_pred CCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEe---------------------------cCCHHHHHhh
Confidence 4578999999999999999999999999999987777777732 4567899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHHhccc
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFYGKK 575 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~~~~~ 575 (1089)
+|.++||++++ ++|+.+.++.|..+.+++.++|+.+++...++
T Consensus 88 ~V~~~PT~~~~-~~G~~v~~~~G~~~~~~l~~~i~~ll~~~~e~ 130 (132)
T d2hfda1 88 GVFRFPATLVF-TGGNYRGVLNGIHPWAELINLMRGLVEPQQER 130 (132)
T ss_dssp TCCSCCEEEEE-ETTEEEEEECCCSCHHHHHHHHHHHHSCSSCC
T ss_pred ccCcceeEEEE-EcCcEeeeecCCCCHHHHHHHHHHHhCccccc
Confidence 99999999999 99999999999999999999999988765443
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.36 E-value=1.5e-10 Score=126.56 Aligned_cols=250 Identities=13% Similarity=0.176 Sum_probs=167.3
Q ss_pred CeEEEEeCCCCEEEEEeCC--CCE--EEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCC
Q 001380 613 NRLFISDSNHNRIVVTDLD--GNF--IVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVN 688 (1089)
Q Consensus 613 g~L~vsd~~~~~I~~~~~~--g~~--~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~ 688 (1089)
..+||+....++|.+++.+ |.. +.++..+ ..|++|+++|+|++||++...++.|+.++.+.
T Consensus 4 ~~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~---------------~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~ 68 (333)
T d1ri6a_ 4 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVP---------------GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68 (333)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECS---------------SCCCCEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred eEEEEECCCCCcEEEEEEcCCCCeEEEEEEcCC---------------CCEeEEEEeCCCCEEEEEECCCCeEEEEEEeC
Confidence 4689999999999999864 332 2333332 26899999999999999999889998877654
Q ss_pred --CeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCCC
Q 001380 689 --DTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGSS 766 (1089)
Q Consensus 689 --g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~ 766 (1089)
+..+.... - ..-..|.+++++|+|+.||+++.....|+.++.............
T Consensus 69 ~~~~~~~~~~-~--------------~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~--------- 124 (333)
T d1ri6a_ 69 DDGALTFAAE-S--------------ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV--------- 124 (333)
T ss_dssp TTCCEEEEEE-E--------------ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE---------
T ss_pred CCCcEEEeee-c--------------ccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceeccccc---------
Confidence 33332221 0 011379999999999999999998889888877665543332111
Q ss_pred CCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEcc
Q 001380 767 SLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAK 846 (1089)
Q Consensus 767 ~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~ 846 (1089)
.....|++++++++++.+|+++.....|..++............. .........|..+++++
T Consensus 125 ---~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---------------~~~~~~g~~p~~i~~~~ 186 (333)
T d1ri6a_ 125 ---EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPA---------------EVTTVEGAGPRHMVFHP 186 (333)
T ss_dssp ---CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE---------------EEECSTTCCEEEEEECT
T ss_pred ---CCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeece---------------eeeeecCCCccEEEEec
Confidence 122358899999999999999999999999987755433221100 00111234689999998
Q ss_pred CC-cEEEEeCCCCEEEEEeC--CCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-EEEEECCCCEEEEEeCCC
Q 001380 847 NG-QIYVADSYNHKIKKLDP--ASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-LFIADTNNNIIRYLDLNK 922 (1089)
Q Consensus 847 ~G-~lyVaD~~n~~I~~~d~--~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-lyVad~~n~~I~~~~~~~ 922 (1089)
++ .+|+++...+.....+. ....+......... +........|.+++++++|+ +|++....+.+..+.+..
T Consensus 187 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~ 261 (333)
T d1ri6a_ 187 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMM-----PENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSE 261 (333)
T ss_dssp TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECS-----CTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred cceeEEeeccccCceEEEeecccccceeeeeeeeee-----ecCCCccccceeEEEecccCceeeecccCCeEEEEEEcC
Confidence 87 57788877777665543 33332222111000 00012345688899998885 899999999998888766
Q ss_pred CC
Q 001380 923 EE 924 (1089)
Q Consensus 923 ~~ 924 (1089)
.+
T Consensus 262 ~~ 263 (333)
T d1ri6a_ 262 DG 263 (333)
T ss_dssp TS
T ss_pred CC
Confidence 53
|
| >d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=7.5e-13 Score=120.03 Aligned_cols=86 Identities=24% Similarity=0.448 Sum_probs=74.5
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
++|+|||+|||+||++|+.+.|.|.++.+++++ +.++-|.. |...++++.|
T Consensus 19 ~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~--~~~~~vd~---------------------------d~~~~~~~~~ 69 (105)
T d2ifqa1 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN--VIFLEVDV---------------------------DDCQDVASEC 69 (105)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEET---------------------------TTCHHHHHHT
T ss_pred CCCEEEEEEEcCCccchhhhhhhhhhhcccccc--ceeeeccc---------------------------ccCHhHHHHc
Confidence 468999999999999999999999999999875 45677743 5667899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
+|+++||++++ ++|+.+.++.|. +.+.++++|+++
T Consensus 70 ~V~~~Pt~~~~-~~G~~v~~~~G~-~~~~l~~~i~~~ 104 (105)
T d2ifqa1 70 EVKCMPTFQFF-KKGQKVGEFSGA-NKEKLEATINEL 104 (105)
T ss_dssp TCCBSSEEEEE-ETTEEEEEEESC-CHHHHHHHHHHH
T ss_pred CceEEEEEEEE-ECCEEEEEEeCC-CHHHHHHHHHhh
Confidence 99999999999 899999999995 677888887765
|
| >d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.34 E-value=4.1e-12 Score=125.67 Aligned_cols=137 Identities=13% Similarity=0.139 Sum_probs=93.4
Q ss_pred CCCccccCCCCCceeecccccCCCEEEEEEecCCCcc-hhhhhhhHHHHHHHcC---CCCEEEEEEeCCCCCChhcHHHH
Q 001380 431 PEFPAKLDWLNTAPLQFRRDLKGKVVVLDFWTYCCIN-CMHVLPDLEFLEKKYK---DMPFTVVGVHSAKFDNEKDLEAI 506 (1089)
Q Consensus 431 P~f~~~~~~~~g~~~~l~~~~~gk~vll~Fwa~wC~~-C~~~~p~l~~l~~~~~---~~~v~vi~v~~~~~~~~~~~~~~ 506 (1089)
+||++. +.+|+++++ ++++||++||+||.+||+. |..+...+..+.+.+. ...+.++.++.. ...+..+..
T Consensus 7 ~dF~l~--d~~G~~vsl-~~~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 81 (169)
T d2b7ka1 7 GPFHLE--DMYGNEFTE-KNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCD--PARDSPAVL 81 (169)
T ss_dssp CCCEEE--ETTSCEEEG-GGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESC--TTTCCHHHH
T ss_pred CCeEEE--eCCCCEECH-HHHCCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeeccc--cccCchhhh
Confidence 689854 569999999 9999999999999999976 7777666666655543 234555555442 223445555
Q ss_pred HHHHHHcCCccceeecCChh---H----------------HHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHH
Q 001380 507 RNAVLRYGISHPVVNDGDMN---L----------------WRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEA 567 (1089)
Q Consensus 507 ~~~~~~~~~~~~v~~d~~~~---l----------------~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~ 567 (1089)
..+...++..+......... . ...|.+.+.|++||||++|+++..+.+..+.+.+.+.|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~~~~~~~~~~~~~~I~e 161 (169)
T d2b7ka1 82 KEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVE 161 (169)
T ss_dssp HHHHTTSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHH
T ss_pred hhhhccccccccccccchhhhhhhhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEEECCCCCHHHHHHHHHH
Confidence 55555555555444333221 1 2234567789999999999999999888888877777777
Q ss_pred HHHHh
Q 001380 568 ALLFY 572 (1089)
Q Consensus 568 ~l~~~ 572 (1089)
.++.+
T Consensus 162 ~ik~l 166 (169)
T d2b7ka1 162 HVKSY 166 (169)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 76653
|
| >d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]
Probab=99.34 E-value=1.8e-12 Score=119.20 Aligned_cols=87 Identities=29% Similarity=0.463 Sum_probs=74.4
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+|+|||+||++||++|+.+.|.|.++.+++.+ +.++-|.+ |....++++|
T Consensus 25 ~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~vd~---------------------------d~~~~l~~~~ 75 (113)
T d1ti3a_ 25 SQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN--VTFLKVDV---------------------------DELKAVAEEW 75 (113)
T ss_dssp SSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSS--EEEEEEET---------------------------TTCHHHHHHH
T ss_pred CCCEEEEEEEcCccccchhhhhhhhhhhccCCC--ceEEeeee---------------------------eccccccccC
Confidence 569999999999999999999999999999864 67777754 4567899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
+|+++||++++ ++|+.+.++.|. +.+.+.++|++..
T Consensus 76 ~I~~~Pt~~~~-k~G~~v~~~~G~-~~~~l~~~i~k~a 111 (113)
T d1ti3a_ 76 NVEAMPTFIFL-KDGKLVDKTVGA-DKDGLPTLVAKHA 111 (113)
T ss_dssp HCSSTTEEEEE-ETTEEEEEEECC-CTTHHHHHHHHHH
T ss_pred eecccceEEEE-ECCEEEEEEcCC-CHHHHHHHHHHHh
Confidence 99999999999 699999999994 6777777776543
|
| >d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Salmonella typhimurium [TaxId: 90371]
Probab=99.31 E-value=5.8e-13 Score=123.09 Aligned_cols=93 Identities=15% Similarity=0.154 Sum_probs=73.9
Q ss_pred ccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 450 ~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
....++|+|+||++||++|+.+.|.|.+|.++|++..+.++-|.. |.+.++++
T Consensus 27 ~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~---------------------------d~~~~l~~ 79 (119)
T d2es7a1 27 RVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADL---------------------------EQSEAIGD 79 (119)
T ss_dssp -CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECH---------------------------HHHHHHHH
T ss_pred hCCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEEC---------------------------CCCHHHHH
Confidence 335678999999999999999999999999999986687777732 45578999
Q ss_pred HhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 530 ELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
.|+|+++||++++ ++|+.+.++.|..+.+++.+.|+.+|+
T Consensus 80 ~~~V~~~Pt~~~~-~~G~~v~~~~G~~~~~~l~~~i~~lLd 119 (119)
T d2es7a1 80 RFNVRRFPATLVF-TDGKLRGALSGIHPWAELLTLMRSIVD 119 (119)
T ss_dssp TTTCCSSSEEEEE-SCC----CEESCCCHHHHHHHHHHHHC
T ss_pred hcCcCcceEEEEE-EcCeEEEEeeCCCCHHHHHHHHHHHhC
Confidence 9999999999999 799999999999999999999998763
|
| >d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.30 E-value=4.6e-12 Score=115.29 Aligned_cols=93 Identities=17% Similarity=0.117 Sum_probs=75.4
Q ss_pred cccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcC---CCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCCh
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYK---DMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDM 525 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~---~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~ 525 (1089)
..+.++++|++||++||++|+.+.|.+.+++.+.. ...+.++.|.. +...
T Consensus 11 ~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~---------------------------~~~~ 63 (107)
T d1a8la2 11 RNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEA---------------------------IEYP 63 (107)
T ss_dssp TTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEG---------------------------GGCH
T ss_pred HhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEecc---------------------------cccc
Confidence 34556777888999999999999999999976532 23477777743 3445
Q ss_pred hHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 526 NLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 526 ~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
+++++|+|.++||+++ .++|+.+.++.|..+.+.+.++|.++|
T Consensus 64 ~l~~~~~V~~vPTi~i-~~~G~~~~~~~G~~~~~~~~~~i~~al 106 (107)
T d1a8la2 64 EWADQYNVMAVPKIVI-QVNGEDRVEFEGAYPEKMFLEKLLSAL 106 (107)
T ss_dssp HHHHHTTCCSSCEEEE-EETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred ccccccccccceEEEE-EeCCeEEEEEECCCCHHHHHHHHHHhh
Confidence 7999999999998655 489999999999999999999998876
|
| >d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) species: Escherichia coli [TaxId: 562]
Probab=99.29 E-value=6.7e-13 Score=123.15 Aligned_cols=94 Identities=18% Similarity=0.310 Sum_probs=71.0
Q ss_pred cccCCCEEEEEEecCCCcchhhhhhhH---HHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCCh
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVLPDL---EFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDM 525 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~p~l---~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~ 525 (1089)
++.+||+|||+|||+||++|+.+.|.+ .++.+.+. ++.++.+... .+ .+.+.
T Consensus 18 ~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~--~~~~~~~~~~-----~~------------------~~~~~ 72 (117)
T d2fwha1 18 VEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA--DTVLLQANVT-----AN------------------DAQDV 72 (117)
T ss_dssp HHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT--TSEEEEEECT-----TC------------------CHHHH
T ss_pred HHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhcc--ceEEEecccc-----cc------------------hhHHH
Confidence 456899999999999999999999987 44555444 3555555331 11 02345
Q ss_pred hHHHHhCCCceeEEEEECCCCcEEE--EecCCCchhhHHHHHHH
Q 001380 526 NLWRELGVNSWPTFAVVGPNGKLLA--QLAGEGHRKDLDDLVEA 567 (1089)
Q Consensus 526 ~l~~~~~v~~~Pt~~lid~~G~i~~--~~~G~~~~~~l~~~l~~ 567 (1089)
++++.|+|.++|+++++|++|+++. ++.|..+.+++.+.|++
T Consensus 73 ~l~~~~~v~~~Pt~~~~~~~G~~~~~~~~~G~~~~~~~~~~l~~ 116 (117)
T d2fwha1 73 ALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRD 116 (117)
T ss_dssp HHHHHTTCCSSSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred HHHhhhehhhceEEEEEeCCCcEEecccccccCCHHHHHHHHhc
Confidence 6889999999999999999999874 57788888888877753
|
| >d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]
Probab=99.27 E-value=6.3e-12 Score=115.01 Aligned_cols=87 Identities=28% Similarity=0.502 Sum_probs=72.7
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
..|+|+|+||++||++|+.+.|.|.++.++|++ +.++.|.++ +...++++.|
T Consensus 24 ~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~--v~~~~vd~~--------------------------~~~~~l~~~~ 75 (112)
T d1f9ma_ 24 GDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD--VIFLKLDCN--------------------------QENKTLAKEL 75 (112)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEECS--------------------------STTHHHHHHH
T ss_pred CCCEEEEEEEcCCCcchHHHHHHHhhhcccccc--ceeeccccc--------------------------ccchhhHhhe
Confidence 458999999999999999999999999999974 677777431 2356899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
+|.++||++++ ++|+++.++.|. ..+.+.+.|+++
T Consensus 76 ~V~~~Pt~~~~-k~G~~v~~~~G~-~~~~l~e~i~~~ 110 (112)
T d1f9ma_ 76 GIRVVPTFKIL-KENSVVGEVTGA-KYDKLLEAIQAA 110 (112)
T ss_dssp CCSSSSEEEEE-ETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred eeccCCEEEEE-ECCEEEEEEeCC-CHHHHHHHHHHc
Confidence 99999999999 899999999996 556666666654
|
| >d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: phosphatase domain of polynucleotide kinase domain: Polynucleotide kinase, phosphatase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=99.26 E-value=6.3e-12 Score=121.89 Aligned_cols=103 Identities=12% Similarity=0.064 Sum_probs=76.2
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCCh---HhHHHHHHHCC-----CCCCCccEEEEcCCccCCCCCHHHHHHHHHHcC
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADR---IKVDANLAAAG-----LPVSMFDAIVSADAFENLKPAPDIFLSASKILN 236 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~---~~~~~~l~~~g-----l~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lg 236 (1089)
.++||+.++|+.|+++|+.++++||... +.+...++..+ +....++...... ....+|+..+....+.++.
T Consensus 36 ~~~p~v~~~l~~l~~~G~~Iii~T~R~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~k~~~l~~~~ 114 (149)
T d1ltqa1 36 VINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMTRKWVEDIAGVPLVMQCQRE-QGDTRKDDVVKEEIFWKHI 114 (149)
T ss_dssp CBCHHHHHHHHHHHHTTCEEEEEECSCCCCSSSTTHHHHHHHHHHHHTTCCCCSEEEECC-TTCCSCHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHhccCeEEEEecCcHHHHHHHHHHHHHHhhhhhhcCCCcEEEeeccc-ccccCCchHHHHHHHHHhc
Confidence 6899999999999999999999999642 22233333211 1112345555544 3345677788888888877
Q ss_pred CCCCc-EEEEcCChhhHHHHHHcCCeEEEEcCC
Q 001380 237 VPTSE-CIVIEDALAGVQAAKAAQMRCIAVTTT 268 (1089)
Q Consensus 237 v~p~~-~v~VGD~~~Di~aA~~aG~~~i~V~~g 268 (1089)
....+ ++||||+..|+++|+++|++|+.|.+|
T Consensus 115 ~~~~~i~~~igD~~~dv~a~~~~Gi~~~~V~~G 147 (149)
T d1ltqa1 115 APHFDVKLAIDDRTQVVEMWRRIGVECWQVASG 147 (149)
T ss_dssp TTTCEEEEEEECCHHHHHHHHHTTCCEEECSCC
T ss_pred cCCCceEEEEcCCHHHHHHHHHCCCcEEEeCCC
Confidence 76655 567899999999999999999999987
|
| >d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MJ0307, thioredoxin/glutaredoxin-like protein species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.26 E-value=3.5e-12 Score=110.69 Aligned_cols=83 Identities=18% Similarity=0.224 Sum_probs=68.2
Q ss_pred CCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhC
Q 001380 453 GKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELG 532 (1089)
Q Consensus 453 gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~ 532 (1089)
+|+.|+.|||+||++|+.+.|.+.++.+++++. +.++.+.. |.+.+++++|+
T Consensus 2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~-~~~~~~~~---------------------------d~~~~la~~~~ 53 (85)
T d1fo5a_ 2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDA-VEVEYINV---------------------------MENPQKAMEYG 53 (85)
T ss_dssp CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSS-EEEEEEES---------------------------SSSCCTTTSTT
T ss_pred CceEEEEEECCCCcChHhhhhhccccccccccc-cccccccc---------------------------cccccccccCC
Confidence 588999999999999999999999999998764 66666643 45678999999
Q ss_pred CCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 533 VNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 533 v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
|.++||+ +++++|+ +.|..+.+++.++|++.
T Consensus 54 V~~~Pt~-~i~~~g~----~~G~~~~~~l~~~i~~~ 84 (85)
T d1fo5a_ 54 IMAVPTI-VINGDVE----FIGAPTKEALVEAIKKR 84 (85)
T ss_dssp TCCSSEE-EETTEEE----CCSSSSSHHHHHHHHHH
T ss_pred ceEeeEE-EEECCcE----EECCCCHHHHHHHHHhc
Confidence 9999996 4667775 46888888888888764
|
| >d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.25 E-value=6.8e-12 Score=113.19 Aligned_cols=84 Identities=27% Similarity=0.481 Sum_probs=70.5
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.++++||+||++||++|+.+.|.+.++.++|++ +.++-+.+ |...+++++|
T Consensus 17 ~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~--~~~~~vd~---------------------------d~~~~~~~~~ 67 (103)
T d1syra_ 17 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK--MVFIKVDV---------------------------DEVSEVTEKE 67 (103)
T ss_dssp HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEET---------------------------TTTHHHHHHT
T ss_pred CCCcEEEEEeCCcccCcccccccchhhhhcccc--eEEEeecc---------------------------ccCcceeeee
Confidence 468999999999999999999999999999975 45666643 5567899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVE 566 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~ 566 (1089)
+|.++||++++ ++|+.+.++.|. +.+.+.++|+
T Consensus 68 ~V~~~Pt~i~~-k~G~~v~~~~G~-~~~~l~~~i~ 100 (103)
T d1syra_ 68 NITSMPTFKVY-KNGSSVDTLLGA-NDSALKQLIE 100 (103)
T ss_dssp TCCSSSEEEEE-ETTEEEEEEESC-CHHHHHHHHH
T ss_pred eeecceEEEEE-ECCEEEEEEeCc-CHHHHHHHHH
Confidence 99999999888 799999999985 5666666554
|
| >d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: spliceosomal protein U5-15Kd domain: spliceosomal protein U5-15Kd species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=1.1e-11 Score=116.94 Aligned_cols=91 Identities=18% Similarity=0.149 Sum_probs=74.9
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.+|+|||+|||+||++|+++.|.|.++.++|++. +.++.|.+ |...++++.|
T Consensus 21 ~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~VDv---------------------------d~~~~la~~~ 72 (137)
T d1qgva_ 21 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNF-AVIYLVDI---------------------------TEVPDFNKMY 72 (137)
T ss_dssp SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT-EEEEEEET---------------------------TTCCTTTTSS
T ss_pred CCCEEEEEEECCCCccchhcChHHHHHHHHhhcc-ceEEEeec---------------------------cccchhhhhc
Confidence 4689999999999999999999999999999864 88888865 5667899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCC----------chhhHHHHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEG----------HRKDLDDLVEAALLF 571 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~----------~~~~l~~~l~~~l~~ 571 (1089)
+|.++||++++ ++|+.+....|.. ..+++.+.++.+...
T Consensus 73 ~I~~~PT~~~f-~~g~~i~~~~g~~~~~k~~~~l~~~~~~i~~ie~i~~~ 121 (137)
T d1qgva_ 73 ELYDPCTVMFF-FRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRG 121 (137)
T ss_dssp CSCSSCEEEEE-ETTEEEEEECC------CCSCCSCHHHHHHHHHHHHHH
T ss_pred CeeeEEEEEEE-eCCcEEEEEecCCCcceeeeehhhhHHHHHHHHHHHHH
Confidence 99999999999 7888887665543 455677777766554
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.20 E-value=1.6e-09 Score=118.63 Aligned_cols=108 Identities=14% Similarity=0.134 Sum_probs=81.5
Q ss_pred eEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEE
Q 001380 605 KLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALRE 683 (1089)
Q Consensus 605 ~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~ 683 (1089)
|+|+++ +++++++.+..++|.++|.+ ++.+.++...+. ..|.+++++|+|+++||++..++.|+.
T Consensus 1 g~a~~~-~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~-------------~~p~~l~~spDG~~l~v~~~~~~~v~~ 66 (346)
T d1jmxb_ 1 GPALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-------------FGPGTAMMAPDNRTAYVLNNHYGDIYG 66 (346)
T ss_dssp CCCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-------------CSSCEEEECTTSSEEEEEETTTTEEEE
T ss_pred CccCCC-CCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCC-------------CCcceEEECCCCCEEEEEECCCCcEEE
Confidence 456776 77777777777899999998 666666654311 268999999999999999999999999
Q ss_pred EECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC
Q 001380 684 IDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG 736 (1089)
Q Consensus 684 ~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~ 736 (1089)
+|+.++++......+... ......|++++++|+|+.+|++...
T Consensus 67 ~d~~t~~~~~~~~~~~~~----------~~~~~~~~~v~~s~DG~~l~v~~~~ 109 (346)
T d1jmxb_ 67 IDLDTCKNTFHANLSSVP----------GEVGRSMYSFAISPDGKEVYATVNP 109 (346)
T ss_dssp EETTTTEEEEEEESCCST----------TEEEECSSCEEECTTSSEEEEEEEE
T ss_pred EeCccCeeeeeecccccc----------cccCCceEEEEEecCCCEEEEEecC
Confidence 999998776544322211 1123479999999999999998753
|
| >d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Txnl5-like domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=1.8e-11 Score=113.09 Aligned_cols=80 Identities=20% Similarity=0.306 Sum_probs=65.2
Q ss_pred cccCCCEEEEEEecC-------CCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceee
Q 001380 449 RDLKGKVVVLDFWTY-------CCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVN 521 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~-------wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 521 (1089)
++.+||+|+|+|||+ ||++|+.+.|.+.+++++++++ +.++.|.++ + .+.+.
T Consensus 17 ~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~-~~~~~vdv~------~--------------~~~~~ 75 (119)
T d1woua_ 17 EQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEG-CVFIYCQVG------E--------------KPYWK 75 (119)
T ss_dssp HTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTT-EEEEEEECC------C--------------HHHHH
T ss_pred HHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCc-eEEEEEECC------C--------------Ccccc
Confidence 456899999999995 9999999999999999998864 899988652 1 12334
Q ss_pred cCChhHHHHhCCCceeEEEEECCCCcEE
Q 001380 522 DGDMNLWRELGVNSWPTFAVVGPNGKLL 549 (1089)
Q Consensus 522 d~~~~l~~~~~v~~~Pt~~lid~~G~i~ 549 (1089)
|.+..++++|+|.++||+++++..+++.
T Consensus 76 d~~~~l~~~~~V~~iPT~i~~~~g~~l~ 103 (119)
T d1woua_ 76 DPNNDFRKNLKVTAVPTLLKYGTPQKLV 103 (119)
T ss_dssp CTTCHHHHHHCCCSSSEEEETTSSCEEE
T ss_pred hhhhhHHHhCCeEEEEEEEEEECCeEEe
Confidence 7788999999999999999996554443
|
| >d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein PA1234 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.16 E-value=1.2e-13 Score=136.63 Aligned_cols=111 Identities=16% Similarity=0.205 Sum_probs=76.1
Q ss_pred cccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHH
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLW 528 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~ 528 (1089)
+.+++++++|+||++||++|+.++|.|+++++++++.++.+|++ +++.+.+.++..+.+..+|.+.+.+....
T Consensus 50 ~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~~~~~~~i~~-------d~~~~~~~~~~~~~~~~~p~~~~~d~~~~ 122 (166)
T d1z6na1 50 QRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISK-------GRAEDDLRQRLALERIAIPLVLVLDEEFN 122 (166)
T ss_dssp HTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCTTEEEEEECH-------HHHHHHTTTTTTCSSCCSSEEEEECTTCC
T ss_pred HHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCCCCcEEEEEC-------ccCHHHHHHHHHhccccccceeecCccch
Confidence 67889999999999999999999999999999998655555444 56666666666666666654433333333
Q ss_pred HHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHH
Q 001380 529 RELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVE 566 (1089)
Q Consensus 529 ~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~ 566 (1089)
..+.....|++++++.+|.+...+.|+.+.+.+++++.
T Consensus 123 ~~~~~~~~P~~~~~~~~~~~~~~~~G~~~~~~~~eil~ 160 (166)
T d1z6na1 123 LLGRFVERPQAVLDGGPQALAAYKAGDYLEHAIGDVLA 160 (166)
T ss_dssp EEEEEESSCHHHHHHCHHHHHHHHTTTTHHHHHHHHHH
T ss_pred hcccccccchhheecccceeeeeccccccHHHHHHHHH
Confidence 33334566777777777766666666665555554443
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.16 E-value=6.3e-10 Score=124.62 Aligned_cols=245 Identities=11% Similarity=0.070 Sum_probs=144.7
Q ss_pred CCCceEEEeecCCeEEEEeC--CCCEEEEEe--CCCCEEEEEecCCCCCCCCCCC---CccccCCcceeEEeeCCCEEEE
Q 001380 601 KFPGKLAIDILNNRLFISDS--NHNRIVVTD--LDGNFIVQIGSSGEEGLRDGSF---DDATFNRPQGLAYNAKKNLLYV 673 (1089)
Q Consensus 601 ~~P~~vavd~~~g~L~vsd~--~~~~I~~~~--~~g~~~~~i~~~g~~g~~dG~~---~~~~f~~P~gla~d~~g~~lyV 673 (1089)
..|..+++++.+..+||+.. ++++|..+. .++.....+... ..+..++.. ....-.+|++++++|+|+++|+
T Consensus 83 ~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v 161 (365)
T d1jofa_ 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVS-ETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYS 161 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEEC-TTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred CCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeee-ecceecCcccCcccCCCCcceEEEECCCCCEEEE
Confidence 36888899886666777654 455665543 333333222111 111111100 0011236899999999999999
Q ss_pred EECCCCEEEEEECC-CCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEE
Q 001380 674 ADTENHALREIDFV-NDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRA 752 (1089)
Q Consensus 674 aD~~n~~I~~~d~~-~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~ 752 (1089)
+|.+.++|++++.+ ++.+......-.. ..-+.|.+++++|++..+|++....++|..|+.+.+....
T Consensus 162 ~d~g~d~v~~~~~~~~g~~~~~~~~~~~------------~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~ 229 (365)
T d1jofa_ 162 ADLTANKLWTHRKLASGEVELVGSVDAP------------DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMP 229 (365)
T ss_dssp EETTTTEEEEEEECTTSCEEEEEEEECS------------STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred eeCCCCEEEEEEccCCCceeeccceeec------------CCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceE
Confidence 99999999988654 3444333211000 0014799999999999999999999999988876543211
Q ss_pred --EeCCCcc---ccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCe-----EEEEEcCCC-CeEEEecCCCCCCCCc
Q 001380 753 --FSGDGYE---RNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSS-----IRALNLKTG-GSRLLAGGDPIFPDNL 821 (1089)
Q Consensus 753 --~~g~g~~---~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~-----I~~~~~~~~-~~~~~~g~~~~~~~~l 821 (1089)
..+.... ..............++..|+++|+|+.||+++.+.+. |..++.... .+.....
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~--------- 300 (365)
T d1jofa_ 230 VYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLF--------- 300 (365)
T ss_dssp EEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEE---------
T ss_pred EEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeE---------
Confidence 1111000 0000011112334567899999999999999865443 655554422 2211100
Q ss_pred cccCCCCCccccccccCceEEEEcc-CCc-EEEEeCCCCEEEEEeCCCCeEEEEe
Q 001380 822 FKFGDRDGMGSEVLLQHPLGVYCAK-NGQ-IYVADSYNHKIKKLDPASNRVSTLA 874 (1089)
Q Consensus 822 ~~~g~~dg~~~~~~l~~P~gva~~~-~G~-lyVaD~~n~~I~~~d~~~~~v~t~~ 874 (1089)
.. .....-.+|.++++++ +|+ |||++...+.|.+++.++..+..++
T Consensus 301 --~~-----~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l~~~~ 348 (365)
T d1jofa_ 301 --LS-----PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFLHRVA 348 (365)
T ss_dssp --EE-----ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEEEEEE
T ss_pred --ee-----EEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCcCcEEE
Confidence 00 0001124799999997 675 9999999999998876555555443
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.16 E-value=6.9e-09 Score=114.35 Aligned_cols=277 Identities=13% Similarity=0.022 Sum_probs=167.1
Q ss_pred EeecCCeEEEEeCC----CCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC-----
Q 001380 608 IDILNNRLFISDSN----HNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE----- 677 (1089)
Q Consensus 608 vd~~~g~L~vsd~~----~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~----- 677 (1089)
..|.+.++||++.. .+.|+++|.+ |+.+.++..+ . .| +++++|+|+.|||++..
T Consensus 9 ~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g-~--------------~~-~~a~SpDg~~l~v~~~~~~~~~ 72 (355)
T d2bbkh_ 9 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG-F--------------LP-NPVVADDGSFIAHASTVFSRIA 72 (355)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC-S--------------SC-EEEECTTSSCEEEEEEEEEETT
T ss_pred eCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECC-C--------------CC-ceEEcCCCCEEEEEeCCCcccc
Confidence 34667889999854 3469999987 6777666543 1 23 79999999999998642
Q ss_pred ----CCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC-CcEEEEEECCCCeEEE
Q 001380 678 ----NHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG-QHQIWEHSTVDGVTRA 752 (1089)
Q Consensus 678 ----n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~-~~~I~~~~~~~g~~~~ 752 (1089)
.+.|+++|..++............ .......|.+++++++++.+|++... ...+..++..++....
T Consensus 73 ~g~~d~~v~v~D~~t~~~~~~~~~~~~~---------~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~ 143 (355)
T d2bbkh_ 73 RGERTDYVEVFDPVTLLPTADIELPDAP---------RFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKR 143 (355)
T ss_dssp EEEEEEEEEEECTTTCCEEEEEEETTCC---------CCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEE
T ss_pred ccCCCCEEEEEECCCCCEEEEEecCCcc---------eeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEee
Confidence 467999999987765443222111 01123578999999999999999865 4577788888876543
Q ss_pred -EeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEE--EecCCCCCC-CCccccCCCC
Q 001380 753 -FSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRL--LAGGDPIFP-DNLFKFGDRD 828 (1089)
Q Consensus 753 -~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~--~~g~~~~~~-~~l~~~g~~d 828 (1089)
+...+... ......+..++++++|..+++.....+.+..++........ ......... ...+.+...+
T Consensus 144 ~~~~~~~~~--------~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (355)
T d2bbkh_ 144 MLDVPDCYH--------IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYT 215 (355)
T ss_dssp EEECCSEEE--------EEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTT
T ss_pred EEecCCcce--------EeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCC
Confidence 33211100 01123455688899998999888777777666554321100 000000000 0000000000
Q ss_pred C----------c---------------cccccccCceEEEEccCCc-EEEEeCC---------CCEEEEEeCCCCeEE-E
Q 001380 829 G----------M---------------GSEVLLQHPLGVYCAKNGQ-IYVADSY---------NHKIKKLDPASNRVS-T 872 (1089)
Q Consensus 829 g----------~---------------~~~~~l~~P~gva~~~~G~-lyVaD~~---------n~~I~~~d~~~~~v~-t 872 (1089)
+ . .....-..+..++++++|. +|++... .+.|..+|..++++. +
T Consensus 216 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~ 295 (355)
T d2bbkh_ 216 GKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAK 295 (355)
T ss_dssp SEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEE
T ss_pred CeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEE
Confidence 0 0 0000001223477777774 6665322 246888888766543 3
Q ss_pred EeccCCCCCCCCcccccccCCCceEEEccCCc--EEEEECCCCEEEEEeCCCCCceEEEEeec
Q 001380 873 LAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN--LFIADTNNNIIRYLDLNKEEPELQTLELK 933 (1089)
Q Consensus 873 ~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~--lyVad~~n~~I~~~~~~~~~~~~~~l~~~ 933 (1089)
+.. + ..|.++++.++|+ +|++...++.|.+++..+. ..+.++...
T Consensus 296 ~~~-~--------------~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg-~~~~~i~~~ 342 (355)
T d2bbkh_ 296 FEM-G--------------HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG-EELRSVNQL 342 (355)
T ss_dssp EEE-E--------------EEECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEEECCC
T ss_pred ecC-C--------------CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCC-CEEEEEeCc
Confidence 321 1 2388999999996 7888888999999999876 356677633
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.15 E-value=6.4e-09 Score=119.11 Aligned_cols=212 Identities=11% Similarity=0.001 Sum_probs=152.2
Q ss_pred CCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCe
Q 001380 612 NNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDT 690 (1089)
Q Consensus 612 ~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~ 690 (1089)
.+.++|+....++|.++|.+ ++.+..+..+ ..|++++++|+|+++|++.. .+.|+.+|+.++.
T Consensus 31 ~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g---------------~~~~~v~fSpDG~~l~~~s~-dg~v~~~d~~t~~ 94 (432)
T d1qksa2 31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG---------------YAVHISRLSASGRYLFVIGR-DGKVNMIDLWMKE 94 (432)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECS---------------SCEEEEEECTTSCEEEEEET-TSEEEEEETTSSS
T ss_pred CcEEEEEEcCCCEEEEEECCCCcEEEEEeCC---------------CCeeEEEECCCCCEEEEEcC-CCCEEEEEeeCCC
Confidence 34557999999999999998 7788887654 15899999999999999975 5789999987654
Q ss_pred EEEEecCCCCCCCCCCCCcccccccCCceeEEEe----cCCCEEEEEECCCcEEEEEECCCCeEEEE-eCCCccccCCCC
Q 001380 691 VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYK----PINEKVYIAMAGQHQIWEHSTVDGVTRAF-SGDGYERNLNGS 765 (1089)
Q Consensus 691 v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~----~~g~~lyvad~~~~~I~~~~~~~g~~~~~-~g~g~~~~~~g~ 765 (1089)
........ ....|.+++++ |+|..||++....+.|..||..++.+... .+.+.... ...
T Consensus 95 ~~~~~~i~---------------~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~-~~~ 158 (432)
T d1qksa2 95 PTTVAEIK---------------IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYD-EQE 158 (432)
T ss_dssp CCEEEEEE---------------CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTT-TCC
T ss_pred ceEEEEEe---------------cCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCcccc-cee
Confidence 32221100 01256677664 58889999999999999999988876543 33221110 000
Q ss_pred CCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEc
Q 001380 766 SSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCA 845 (1089)
Q Consensus 766 ~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~ 845 (1089)
. .....+.+|+++++|..+|++...++.|..++..+.....+..- .. -..|.+++++
T Consensus 159 ~---~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i---------~~-----------g~~~~~~~~s 215 (432)
T d1qksa2 159 Y---HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI---------SA-----------ERFLHDGGLD 215 (432)
T ss_dssp E---ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE---------EC-----------CSSEEEEEEC
T ss_pred c---cCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEE---------cc-----------cCccccceEC
Confidence 0 11234567889999999999999999999999876543222110 00 1258999999
Q ss_pred cCCc-EEEEeCCCCEEEEEeCCCCeEEEEeccCC
Q 001380 846 KNGQ-IYVADSYNHKIKKLDPASNRVSTLAGIGK 878 (1089)
Q Consensus 846 ~~G~-lyVaD~~n~~I~~~d~~~~~v~t~~g~g~ 878 (1089)
++|+ +|++....+.|..+|..++.+......+.
T Consensus 216 pdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~ 249 (432)
T d1qksa2 216 GSHRYFITAANARNKLVVIDTKEGKLVAIEDTGG 249 (432)
T ss_dssp TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred CCCCEEEEeccccceEEEeecccceEEEEeccCc
Confidence 9996 89999999999999999888877766544
|
| >d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Bacterocin transport accessory protein Bta species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.14 E-value=4.9e-11 Score=109.77 Aligned_cols=90 Identities=12% Similarity=0.240 Sum_probs=72.8
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.++.++|+||++||++|+.+.|.|.++.++++.. +.++.+ +..++.+.. ..++++|
T Consensus 25 ~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~-v~~v~~-----~~~~~~~~~------------------~~~~~~~ 80 (115)
T d1zmaa1 25 KKETATFFIGRKTCPYCRKFAGTLSGVVAETKAH-IYFINS-----EEPSQLNDL------------------QAFRSRY 80 (115)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCC-CEEEET-----TCGGGHHHH------------------HHHHHHH
T ss_pred cCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhh-hhhhee-----ecccccccc------------------ccccccc
Confidence 5788999999999999999999999999998754 555555 223333222 2567788
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVE 566 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~ 566 (1089)
+|.++||++++ ++|+++.++.|..+.+++.++|.
T Consensus 81 ~V~~~PTli~~-~~gk~~~~~~G~~~~~el~~fla 114 (115)
T d1zmaa1 81 GIPTVPGFVHI-TDGQINVRCDSSMSAQEIKDFAG 114 (115)
T ss_dssp TCCSSCEEEEE-ETTEEEEECCTTCCHHHHHHHHT
T ss_pred ccccccEEEEE-ECCEEEEEEcCCCCHHHHHHHHc
Confidence 99999999999 69999999999999999988863
|
| >d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH807, thioredoxin/glutaredoxin-like protein species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.14 E-value=2.3e-11 Score=105.23 Aligned_cols=81 Identities=17% Similarity=0.237 Sum_probs=66.3
Q ss_pred EEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhCCCc
Q 001380 456 VVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNS 535 (1089)
Q Consensus 456 vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~ 535 (1089)
.|..||++||++|+.+.|.++++.++|.++ +.++-|.+ |.+.+++++|+|.+
T Consensus 4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~-v~~~~vd~---------------------------d~~~~l~~~~~V~~ 55 (85)
T d1nhoa_ 4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDK-IDVEKIDI---------------------------MVDREKAIEYGLMA 55 (85)
T ss_dssp CEEEESCSSSCCSTTHHHHHHHHHHHHCSS-CCEEEECT---------------------------TTCGGGGGGTCSSC
T ss_pred EEEEEECCCCcchHHHHHHHhhhccccccc-cccccccc---------------------------ccchhhHHhcCceE
Confidence 355699999999999999999999999864 77777744 56778999999999
Q ss_pred eeEEEEECCCCcEEEEecCCCchhhHHHHHHHHH
Q 001380 536 WPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAAL 569 (1089)
Q Consensus 536 ~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l 569 (1089)
+||++ ++.++ ++.|..+.+.+.++|++.+
T Consensus 56 ~Pt~~-~~~~~----~~~G~~~~~~l~~~i~~~l 84 (85)
T d1nhoa_ 56 VPAIA-INGVV----RFVGAPSREELFEAINDEM 84 (85)
T ss_dssp SSEEE-ETTTE----EEECSSCCHHHHHHHHHHC
T ss_pred eCEEE-ECCcE----EEEcCCCHHHHHHHHHHhh
Confidence 99865 45543 3568889999999988765
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.12 E-value=1.8e-08 Score=114.93 Aligned_cols=208 Identities=13% Similarity=0.042 Sum_probs=144.9
Q ss_pred CCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCe
Q 001380 612 NNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDT 690 (1089)
Q Consensus 612 ~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~ 690 (1089)
.+.++|+...+++|.++|.. ++.+.++..+ ..|++|+++|+|+++|+++. ++.|+++|.+++.
T Consensus 31 ~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g---------------~~~~~vafSPDGk~l~~~~~-d~~v~vwd~~t~~ 94 (426)
T d1hzua2 31 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTG---------------YAVHISRMSASGRYLLVIGR-DARIDMIDLWAKE 94 (426)
T ss_dssp GGEEEEEETTTTEEEEEETTTCSEEEEEECC---------------SSEEEEEECTTSCEEEEEET-TSEEEEEETTSSS
T ss_pred CeEEEEEEcCCCEEEEEECCCCcEEEEEeCC---------------CCeeEEEECCCCCEEEEEeC-CCCEEEEEccCCc
Confidence 45677999999999999987 8888888654 25899999999999999975 5789999998876
Q ss_pred EEEEecCCCCCCCCCCCCcccccccCCceeEEE----ecCCCEEEEEECCCcEEEEEECCCCeEEEEe-CCCccccCCCC
Q 001380 691 VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCY----KPINEKVYIAMAGQHQIWEHSTVDGVTRAFS-GDGYERNLNGS 765 (1089)
Q Consensus 691 v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~----~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~-g~g~~~~~~g~ 765 (1089)
....+... ....|.++++ +|+|+++|++....+.+..+|..++.+.... +.+.... ..
T Consensus 95 ~~~~~~i~---------------~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~ 157 (426)
T d1hzua2 95 PTKVAEIK---------------IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVD--TQ 157 (426)
T ss_dssp CEEEEEEE---------------CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSS--SC
T ss_pred eeEEEEEe---------------CCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCcc--ce
Confidence 44332100 0123455544 5689999999999999999999988765443 2221110 00
Q ss_pred CCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEc
Q 001380 766 SSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCA 845 (1089)
Q Consensus 766 ~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~ 845 (1089)
. -..-..+..++.++++..++++..+++.|..+...+.....+.. ...-.+|.+++++
T Consensus 158 ~--~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~ 215 (426)
T d1hzua2 158 T--YHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTS--------------------IGAAPFLADGGWD 215 (426)
T ss_dssp C--EESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEE--------------------EECCSSEEEEEEC
T ss_pred e--ecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEE--------------------eccCCccEeeeEC
Confidence 0 00112345788889998999999999988888766443211100 0012368999999
Q ss_pred cCCc-EEEEeCCCCEEEEEeCCCCeEEEEe
Q 001380 846 KNGQ-IYVADSYNHKIKKLDPASNRVSTLA 874 (1089)
Q Consensus 846 ~~G~-lyVaD~~n~~I~~~d~~~~~v~t~~ 874 (1089)
++|+ +|++....+.+..++..++.+....
T Consensus 216 ~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~ 245 (426)
T d1hzua2 216 SSHRYFMTAANNSNKVAVIDSKDRRLSALV 245 (426)
T ss_dssp TTSCEEEEEETTCSEEEEEETTTTEEEEEE
T ss_pred CCCcEEEeeeecccceeeeecccccEEEEe
Confidence 9985 8889888899999988777665443
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.12 E-value=5.5e-08 Score=107.91 Aligned_cols=268 Identities=12% Similarity=-0.004 Sum_probs=163.3
Q ss_pred eEEEeecCCeEEEEeCC---------CCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEE
Q 001380 605 KLAIDILNNRLFISDSN---------HNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVA 674 (1089)
Q Consensus 605 ~vavd~~~g~L~vsd~~---------~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVa 674 (1089)
+++++|++.+||++... .+.|.++|.. ++.+..+...... .......|.+++++++|+.+|+.
T Consensus 70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~-------~~~~~~~~~~~~~s~dg~~~~v~ 142 (373)
T d2madh_ 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAP-------RFDVGPYSWMNANTPNNADLLFF 142 (373)
T ss_pred cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcc-------eeEeccCCCcEEEEeCCCcEEEE
Confidence 68999988889998753 3578888887 6666665544221 12335678999999999988888
Q ss_pred ECC-CCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEE
Q 001380 675 DTE-NHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAF 753 (1089)
Q Consensus 675 D~~-n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~ 753 (1089)
... .+.+..++...+.+.... ..|..++++++|..+|++....+.+..++..++.+...
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~ 202 (373)
T d2madh_ 143 QFAAGPAVGLVVQGGSSDDQLL--------------------SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAG 202 (373)
T ss_pred EEcCCCceEEeeccCCeEEEEe--------------------ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEE
Confidence 643 456677776665544332 36788999999999999999999999999888776654
Q ss_pred eCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCcccc
Q 001380 754 SGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSE 833 (1089)
Q Consensus 754 ~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~ 833 (1089)
........ .....+..++.++++ .++.....+++..++..++.......... ........+..
T Consensus 203 ~~~~~~~~--------~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------ 265 (373)
T d2madh_ 203 LVGAMLTA--------AQNLLTQPAQANKSG--RIVWPVYSGKILQADISAAGATNKAPIDA-LSGGRKADTWR------ 265 (373)
T ss_pred Eeeecccc--------CccceeeeEEECCCc--eEEEecCCceEEEEEcCCCeEEEEEeecc-ccCcEEeeeec------
Confidence 32211100 111122334444443 33333345566666655444332211100 00000000000
Q ss_pred ccccCceEEEEccC----------CcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCC
Q 001380 834 VLLQHPLGVYCAKN----------GQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNG 903 (1089)
Q Consensus 834 ~~l~~P~gva~~~~----------G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G 903 (1089)
-..+..+++.++ +..+++....+.|..+|..++........+ ..|.++++.+||
T Consensus 266 --~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~--------------~~~~~~a~spDG 329 (373)
T d2madh_ 266 --PGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG--------------HDVDAISVAQDG 329 (373)
T ss_pred --cCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCC--------------CCeeEEEECCCC
Confidence 011222333333 345555666778888888766544332221 348899999999
Q ss_pred c--EEEEECCCCEEEEEeCCCCCceEEEEeec
Q 001380 904 N--LFIADTNNNIIRYLDLNKEEPELQTLELK 933 (1089)
Q Consensus 904 ~--lyVad~~n~~I~~~~~~~~~~~~~~l~~~ 933 (1089)
+ ||++...++.|+++|..+. ..+.++...
T Consensus 330 ~~~l~vt~~~d~~v~v~D~~tg-~~~~~~~~~ 360 (373)
T d2madh_ 330 GPDLYALSAGTEVLHIYDAGAG-DQDQSTVEL 360 (373)
T ss_pred CEEEEEEeCCCCeEEEEECCCC-CEEEEECCC
Confidence 6 7889999999999999887 356666643
|
| >d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=1.1e-10 Score=114.21 Aligned_cols=122 Identities=16% Similarity=0.037 Sum_probs=92.8
Q ss_pred CCCCCCCCCCccccCCCCCceeecccc-cCCCEEEEEEe-cCCCcchh-hhhhhHHHHHHHcCCCCE-EEEEEeCCCCCC
Q 001380 424 RKTTPIVPEFPAKLDWLNTAPLQFRRD-LKGKVVVLDFW-TYCCINCM-HVLPDLEFLEKKYKDMPF-TVVGVHSAKFDN 499 (1089)
Q Consensus 424 ~~~g~~~P~f~~~~~~~~g~~~~l~~~-~~gk~vll~Fw-a~wC~~C~-~~~p~l~~l~~~~~~~~v-~vi~v~~~~~~~ 499 (1089)
.++|+.+|+|++.. ..+|+.+++ ++ ++||+|||.|| +.||+.|. .+++.+.+.+++++++|. +++++++
T Consensus 3 ikVGd~aP~f~l~~-~~~~~~v~l-~d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~g~~~i~~~s~----- 75 (161)
T d1hd2a_ 3 IKVGDAIPAVEVFE-GEPGNKVNL-AELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSV----- 75 (161)
T ss_dssp CCTTCBCCCCEEEC-SSTTCEEEH-HHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEES-----
T ss_pred CCCCCcCCCeEEEe-cCCCcEEEh-HHHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHcCCeEEEEEec-----
Confidence 56899999999642 236789999 55 59999999999 88999995 688889998888888776 4556764
Q ss_pred hhcHHHHHHHHHHcCC--ccceeecCChhHHHHhCCCc------------eeEEEEECCCCcEEEEec
Q 001380 500 EKDLEAIRNAVLRYGI--SHPVVNDGDMNLWRELGVNS------------WPTFAVVGPNGKLLAQLA 553 (1089)
Q Consensus 500 ~~~~~~~~~~~~~~~~--~~~v~~d~~~~l~~~~~v~~------------~Pt~~lid~~G~i~~~~~ 553 (1089)
++....+++.+..+. +++++.|++++++++||+.. ...+++|+++|+|++.+.
T Consensus 76 -~~~~~~~~~~~~~~~~~~~~llsD~~~~~a~~~g~~~~~~~~g~~~~~~s~r~~~I~~~G~I~~~~v 142 (161)
T d1hd2a_ 76 -NDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNV 142 (161)
T ss_dssp -SCHHHHHHHHHHTTCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEETTEEEEEEE
T ss_pred -CchhhhhhhhhhcccccccccccCCcceeeeeeeeeeccccCccccccEEeEEEEEECCCEEEEEEE
Confidence 344555566666555 47899999999999999731 234566667999988754
|
| >d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.12 E-value=1.1e-10 Score=108.11 Aligned_cols=89 Identities=12% Similarity=0.312 Sum_probs=75.8
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.++.+||.||++||++|+.+.|.+.++.+++++.++.+..|.+ +.+.+++++|
T Consensus 26 ~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~---------------------------~~~~~l~~~~ 78 (119)
T d2b5ea4 26 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDC---------------------------TENQDLCMEH 78 (119)
T ss_dssp TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEET---------------------------TTCHHHHHHT
T ss_pred cCCeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeec---------------------------cchHHHHHHh
Confidence 4689999999999999999999999999999876788888865 4567899999
Q ss_pred CCCceeEEEEECCCCcE--EEEecCCCchhhHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKL--LAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i--~~~~~G~~~~~~l~~~l~~~ 568 (1089)
+|.++|+++++ ++|+. ...+.|..+.+.+.++|.+.
T Consensus 79 ~v~~~Pti~~f-~~g~~~~~~~y~g~~~~~~l~~fi~k~ 116 (119)
T d2b5ea4 79 NIPGFPSLKIF-KNSDVNNSIDYEGPRTAEAIVQFMIKQ 116 (119)
T ss_dssp TCCSSSEEEEE-ETTCTTCEEECCSCCSHHHHHHHHHHH
T ss_pred ccccCCeEEEE-ECCEEeeeEEecCCCCHHHHHHHHHHh
Confidence 99999999999 66644 34577888888888888754
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.11 E-value=1.7e-10 Score=130.17 Aligned_cols=238 Identities=9% Similarity=0.069 Sum_probs=155.6
Q ss_pred CeEEEEeCCCCEEEEEeC-CCCEEEEEecCCCCCCCCC---------------CCCccccCCcceeEE--eeCCCEEEEE
Q 001380 613 NRLFISDSNHNRIVVTDL-DGNFIVQIGSSGEEGLRDG---------------SFDDATFNRPQGLAY--NAKKNLLYVA 674 (1089)
Q Consensus 613 g~L~vsd~~~~~I~~~~~-~g~~~~~i~~~g~~g~~dG---------------~~~~~~f~~P~gla~--d~~g~~lyVa 674 (1089)
-.+|+|....++|.+++. .++.+.+|.-....+. .| .+...-..+|+.... .+||++|||+
T Consensus 11 ~y~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~-~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~ 89 (441)
T d1qnia2 11 YYGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSA-TGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFIN 89 (441)
T ss_dssp EEEEEECBTTCCEEEEEETTTEEEEEECSSSBCTT-TCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEE
T ss_pred EEEEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCC-EEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEE
Confidence 356787777889999985 5888888765421111 01 011122345766554 5789999999
Q ss_pred ECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEE--------------
Q 001380 675 DTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQI-------------- 740 (1089)
Q Consensus 675 D~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I-------------- 740 (1089)
|..+++|.+||+++++...+..... ...|++++++|+|+++||+..+.+.+
T Consensus 90 d~~~~rVavIDl~t~k~~~ii~iP~---------------g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~ 154 (441)
T d1qnia2 90 DKANTRVARIRLDIMKTDKITHIPN---------------VQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNS 154 (441)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTT---------------CCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGE
T ss_pred cCCCCEEEEEECCCCcEeeEEecCC---------------CCCccceEEeccCCEEEEEeccCCcccccCcccccccccc
Confidence 9999999999999988766543211 13799999999999999998765554
Q ss_pred ----EEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeE-EEecCCC
Q 001380 741 ----WEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR-LLAGGDP 815 (1089)
Q Consensus 741 ----~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~-~~~g~~~ 815 (1089)
..+|..+..+..-. .--..|.+++++++|+++|++..+++.+..++..+.... .+.
T Consensus 155 ~~~~~~iD~~t~~v~~qI---------------~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~---- 215 (441)
T d1qnia2 155 YTMFTAIDAETMDVAWQV---------------IVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVV---- 215 (441)
T ss_dssp EEEEEEEETTTCSEEEEE---------------EESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEE----
T ss_pred cceEEeecCccceeeEEE---------------ecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEE----
Confidence 33444443332111 001258999999999999999988776655544332211 110
Q ss_pred CCCCCccccCCCCCccccccccCceEEEEccCCc-EEEEeCCCCEEEEEeC-CC-CeEEEEeccCCCCCCCCcccccccC
Q 001380 816 IFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADSYNHKIKKLDP-AS-NRVSTLAGIGKAGFKDGAALAAQLS 892 (1089)
Q Consensus 816 ~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~~n~~I~~~d~-~~-~~v~t~~g~g~~g~~~g~~~~~~l~ 892 (1089)
..+.|.++++.++|+ +++ ..++ +..++. .+ +.+.++. .| .
T Consensus 216 -------------------v~n~p~~~~~~~dGk~~~v--~~~~-v~vvd~~~~~~v~~~IP-vg--------------k 258 (441)
T d1qnia2 216 -------------------VFNVERIAAAVKAGNFKTI--GDSK-VPVVDGRGESEFTRYIP-VP--------------K 258 (441)
T ss_dssp -------------------EEEHHHHHHHHHTTCCBCC--TTCC-CCEEECSSSCSSEEEEC-CB--------------S
T ss_pred -------------------eCCccceEEEecCCCEEEe--CCCC-cEEEEcccCCceEEEEe-CC--------------C
Confidence 123566677778886 333 2233 444443 33 3444543 22 4
Q ss_pred CCceEEEccCCc-EEEEECCCCEEEEEeCCC
Q 001380 893 EPAGIIEAQNGN-LFIADTNNNIIRYLDLNK 922 (1089)
Q Consensus 893 ~P~gi~vd~~G~-lyVad~~n~~I~~~~~~~ 922 (1089)
.|.|+.++++|+ +|++....+.|.+++...
T Consensus 259 sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k 289 (441)
T d1qnia2 259 NPHGLNTSPDGKYFIANGKLSPTVSVIAIDK 289 (441)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred CccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence 599999999997 899999999999999754
|
| >d1rkua_ c.108.1.11 (A:) Homoserine kinase ThrH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Homoserine kinase ThrH domain: Homoserine kinase ThrH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.11 E-value=1.3e-10 Score=118.45 Aligned_cols=193 Identities=11% Similarity=0.092 Sum_probs=121.2
Q ss_pred ceEEEEecCCcccCCchHHHHHHHHHHHHcCCCCCHHhHhhhcCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHh
Q 001380 79 VSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFLPFMGTGEANFLGGVASVKGVKGFDSEAAKKRFFEIYLDKY 158 (1089)
Q Consensus 79 ~k~ViFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (1089)
+|+|+|||||||++. .|.+++++.|+... ...+++...+.+.+.....+ .... ......+....
T Consensus 2 mkli~fDlDGTLl~e------~~~~~a~~~Gi~~~-----~~tgR~~~~~~~~~~~~v~l----l~~~-~~~~~~~~~~~ 65 (206)
T d1rkua_ 2 MEIACLDLEGVLVPE------IWIAFAEKTGIDAL-----KATTRDIPDYDVLMKQRLRI----LDEH-GLKLGDIQEVI 65 (206)
T ss_dssp CEEEEEESBTTTBCC------HHHHHHHHHTCGGG-----GCCTTTCCCHHHHHHHHHHH----HHHT-TCCHHHHHHHH
T ss_pred cEEEEEcCccchHHH------HHHHHHHHcCCHHH-----HHHCCCCCCHHHHHHHHHHH----HHhC-CCceehhhhhh
Confidence 489999999999983 46777788887431 12233322222221111000 0000 00001111111
Q ss_pred cCCCCCCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCC----ccCCCCCHHHHHHHHHH
Q 001380 159 AKPNSGIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADA----FENLKPAPDIFLSASKI 234 (1089)
Q Consensus 159 ~~~~~~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~----~~~~KP~~~~~~~~l~~ 234 (1089)
. .....++...++..++ .+.+.+++|.+...........++.. ..+...+.... .....+++......+++
T Consensus 66 ~---~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (206)
T d1rkua_ 66 A---TLKPLEGAVEFVDWLR-ERFQVVILSDTFYEFSQPLMRQLGFP-TLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIA 140 (206)
T ss_dssp T---TCCCCTTHHHHHHHHH-TTSEEEEEEEEEHHHHHHHHHHTTCC-CEEEEEEEECTTSCEEEEECCSSSHHHHHHHH
T ss_pred h---hccccchHHHHHHHhh-cCceEEEeccCchHHHHHHHHHhCCc-hhhcceeeeecccccccccccchhhHHHHHHH
Confidence 1 2267888888888775 57999999999999999999999986 44433322211 12245555667788999
Q ss_pred cCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEE-ecCcccCCHHHHHhc
Q 001380 235 LNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLI-RKEIGSVSLNDILTG 297 (1089)
Q Consensus 235 lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~v-i~dl~el~i~~ll~~ 297 (1089)
++++++++++|||+.||+.|.+.||+. |..+ ..+++++..++++ ..+..|+ +..|++.
T Consensus 141 ~~i~~~eviaiGDg~NDi~Ml~~Ag~g---IAmn-a~~~v~~~~~~~~~~~~~~d~-~~~~~~~ 199 (206)
T d1rkua_ 141 FKSLYYRVIAAGDSYNDTTMLSEAHAG---ILFH-APENVIREFPQFPAVHTYEDL-KREFLKA 199 (206)
T ss_dssp HHHTTCEEEEEECSSTTHHHHHHSSEE---EEES-CCHHHHHHCTTSCEECSHHHH-HHHHHHH
T ss_pred hcccccceEEecCCccCHHHHHhCCcc---EEEC-CCHHHHHhCCCceeecCHHHH-HHHHHHH
Confidence 999999999999999999999999943 3333 3456666677875 5667776 3445443
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.06 E-value=1.6e-10 Score=130.34 Aligned_cols=249 Identities=11% Similarity=0.007 Sum_probs=156.8
Q ss_pred CCCCceEEE--eecCCeEEEEeCCCCEEEEEeCCC-CEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC
Q 001380 600 LKFPGKLAI--DILNNRLFISDSNHNRIVVTDLDG-NFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT 676 (1089)
Q Consensus 600 l~~P~~vav--d~~~g~L~vsd~~~~~I~~~~~~g-~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~ 676 (1089)
..+|..... .+++.+|||+|..++||.++|.+. +....+.-+ . ...|+|++++++|+++||+..
T Consensus 69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP-~------------g~gphgi~~spdg~t~YV~~~ 135 (441)
T d1qnia2 69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIP-N------------VQAIHGLRLQKVPKTNYVFCN 135 (441)
T ss_dssp BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECT-T------------CCCEEEEEECCSSBCCEEEEE
T ss_pred ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecC-C------------CCCccceEEeccCCEEEEEec
Confidence 345544333 455778999999999999999984 444444332 1 137999999999999999976
Q ss_pred CCCEE------------------EEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCc
Q 001380 677 ENHAL------------------REIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQH 738 (1089)
Q Consensus 677 ~n~~I------------------~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~ 738 (1089)
..+.+ ..+|..+..+..-...+ ..|.+++++|+|+++|++..+++
T Consensus 136 ~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-----------------~~p~~v~~spdGk~a~vt~~nse 198 (441)
T d1qnia2 136 AEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD-----------------GNLDNTDADYTGKYATSTCYNSE 198 (441)
T ss_dssp ECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES-----------------SCCCCEEECSSSSEEEEEESCTT
T ss_pred cCCcccccCcccccccccccceEEeecCccceeeEEEecC-----------------CCccceEECCCCCEEEEEecCCC
Confidence 55544 34666554433221111 26899999999999999998876
Q ss_pred EEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCC-CeEEEecCCCCC
Q 001380 739 QIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTG-GSRLLAGGDPIF 817 (1089)
Q Consensus 739 ~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~-~~~~~~g~~~~~ 817 (1089)
.+..++..+.....+. ..+.+|.++++.++|+.+++.+ ++.+......+. .+..+..+
T Consensus 199 ~~~~id~~t~~~~d~i---------------~v~n~p~~~~~~~dGk~~~v~~--~~v~vvd~~~~~~v~~~IPvg---- 257 (441)
T d1qnia2 199 RAVDLAGTMRNDRDWV---------------VVFNVERIAAAVKAGNFKTIGD--SKVPVVDGRGESEFTRYIPVP---- 257 (441)
T ss_dssp CCSSHHHHTCSSBCEE---------------EEEEHHHHHHHHHTTCCBCCTT--CCCCEEECSSSCSSEEEECCB----
T ss_pred ceEEEeccCcceEEEE---------------EeCCccceEEEecCCCEEEeCC--CCcEEEEcccCCceEEEEeCC----
Confidence 6654443332211111 2234688888899997766643 333333322322 23333221
Q ss_pred CCCccccCCCCCccccccccCceEEEEccCCc-EEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCc-ccccccCCCc
Q 001380 818 PDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGA-ALAAQLSEPA 895 (1089)
Q Consensus 818 ~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~-~~~~~l~~P~ 895 (1089)
..|.|++++|||+ +|++....+.|.++|.+. ....+.+.. ++.+-. +....--.|.
T Consensus 258 -------------------ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k-~~~~~~~~~--~~~~~~~~~~~~glgpl 315 (441)
T d1qnia2 258 -------------------KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDK-LDDLFEDKI--ELRDTIVAEPELGLGPL 315 (441)
T ss_dssp -------------------SSCCCEEECTTSCEEEEECTTSSBEEEEEGGG-HHHHTTTSS--CGGGGEEECCBCCSCEE
T ss_pred -------------------CCccCceECCCCCEEEEeCCcCCcEEEEEeeh-hhhHhhccC--CcceEEEeecccccCcc
Confidence 3699999999996 899999999999999532 111111100 000000 0000112366
Q ss_pred eEEEccCCcEEEEECCCCEEEEEeCC
Q 001380 896 GIIEAQNGNLFIADTNNNIIRYLDLN 921 (1089)
Q Consensus 896 gi~vd~~G~lyVad~~n~~I~~~~~~ 921 (1089)
..++|++|+.|.+-.-+.+|.++++.
T Consensus 316 h~~fd~~g~~yts~~~ds~v~kw~~~ 341 (441)
T d1qnia2 316 HTTFDGRGNAYTTLFIDSQVCKWNIA 341 (441)
T ss_dssp EEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred cceecCCceEEEcccccceEEEeccc
Confidence 67899999999999999999999875
|
| >d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Plant peroxiredoxin species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]
Probab=99.03 E-value=2.2e-10 Score=112.13 Aligned_cols=125 Identities=14% Similarity=0.092 Sum_probs=95.7
Q ss_pred ccCCCCCCCCCCcccc--CCCCCceeecccccCCCEEEEEEe-cCCCcchh-hhhhhHHHHHHHcCCCC-EEEEEEeCCC
Q 001380 422 ENRKTTPIVPEFPAKL--DWLNTAPLQFRRDLKGKVVVLDFW-TYCCINCM-HVLPDLEFLEKKYKDMP-FTVVGVHSAK 496 (1089)
Q Consensus 422 ~~~~~g~~~P~f~~~~--~~~~g~~~~l~~~~~gk~vll~Fw-a~wC~~C~-~~~p~l~~l~~~~~~~~-v~vi~v~~~~ 496 (1089)
...++|+++|+|++.. ..-+++.+++++.++||+|||.|| ..|++.|. ++.+...+..++++.++ ..+++||+
T Consensus 2 ~~l~vGd~~Pdf~l~~~~~~~~~~~~~l~d~~~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~g~~~v~~isv-- 79 (162)
T d1tp9a1 2 APIAVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISV-- 79 (162)
T ss_dssp CCCCTTCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEES--
T ss_pred CCCCCCCCCCCeEEEeecCCCCceEEEHHHHhCCCeEEEEEEecccchhhhhhcchHHHHhhhHHHHcCCcceeeeec--
Confidence 4568999999999642 122345788833469999999999 89999996 56677777777666544 46777775
Q ss_pred CCChhcHHHHHHHHHHcCCc--cceeecCChhHHHHhCCC-----------ceeEEEEECCCCcEEEEec
Q 001380 497 FDNEKDLEAIRNAVLRYGIS--HPVVNDGDMNLWRELGVN-----------SWPTFAVVGPNGKLLAQLA 553 (1089)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~--~~v~~d~~~~l~~~~~v~-----------~~Pt~~lid~~G~i~~~~~ 553 (1089)
++....++|....+.. ++.+.|+..++++.||+. ....+|||| +|+|++.+.
T Consensus 80 ----d~~~~~~~~~~~~~~~~~~~~lsD~~~~~~~~~g~~~~~~~~g~g~~~~R~tfiId-dg~I~~~~v 144 (162)
T d1tp9a1 80 ----NDPFVMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAANI 144 (162)
T ss_dssp ----SCHHHHHHHHHTCTTCSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEEE
T ss_pred ----cchhhhhhhhhhcccccccccccchhhHHHhhhhhccccccccCCcEEEEEEEEEE-CCEEEEEEE
Confidence 5677778888877755 788999999999999963 346789999 899998865
|
| >d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.01 E-value=2.8e-10 Score=100.57 Aligned_cols=83 Identities=22% Similarity=0.305 Sum_probs=67.1
Q ss_pred cccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHH
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLW 528 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~ 528 (1089)
..++|.+.++.|+++||++|+.+.|.|+++.+++. ++.+..|.. +.+.+++
T Consensus 11 k~l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~--~i~~~~vd~---------------------------~~~~~l~ 61 (96)
T d1hyua4 11 RDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP--RIKHTAIDG---------------------------GTFQNEI 61 (96)
T ss_dssp HHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT--TEEEEEEET---------------------------TTCHHHH
T ss_pred HhcCCCeEEEEEECCCCcchHHHHHHHHHHHHhCC--ceEEEEEec---------------------------ccchHHH
Confidence 45678889999999999999999999999998865 477777743 5677999
Q ss_pred HHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHH
Q 001380 529 RELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLV 565 (1089)
Q Consensus 529 ~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l 565 (1089)
+.|+|.++||+++ +|+.+ +.|..+.+++.+.|
T Consensus 62 ~~~~I~~vPt~~~---ng~~~--~~G~~~~~~l~~~l 93 (96)
T d1hyua4 62 TERNVMGVPAVFV---NGKEF--GQGRMTLTEIVAKV 93 (96)
T ss_dssp HHTTCCSSSEEEE---TTEEE--EESCCCHHHHHHHH
T ss_pred hhcccccccEEEE---CCEEE--EecCCCHHHHHHHH
Confidence 9999999999765 77776 45877777766654
|
| >d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=2.1e-10 Score=106.32 Aligned_cols=88 Identities=18% Similarity=0.368 Sum_probs=71.8
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCC--CEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDM--PFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~--~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
++|++||+||++||++|+.+.|.+.++.++++.. .+.++.|.+ +....+++
T Consensus 23 ~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~---------------------------~~~~~l~~ 75 (120)
T d1meka_ 23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDA---------------------------TEESDLAQ 75 (120)
T ss_dssp HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEET---------------------------TTCCSSHH
T ss_pred cCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeecccc---------------------------ccchhHHH
Confidence 4789999999999999999999999999998753 466677754 44668999
Q ss_pred HhCCCceeEEEEECCCCcE--EEEecCCCchhhHHHHHHH
Q 001380 530 ELGVNSWPTFAVVGPNGKL--LAQLAGEGHRKDLDDLVEA 567 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i--~~~~~G~~~~~~l~~~l~~ 567 (1089)
.|+|.++||++++ ++|+. ...+.|..+.+.+.++|++
T Consensus 76 ~~~i~~~Pt~~~~-~~G~~~~~~~~~g~~~~~~l~~fi~~ 114 (120)
T d1meka_ 76 QYGVRGYPTIKFF-RNGDTASPKEYTAGREADDIVNWLKK 114 (120)
T ss_dssp HHTCCSSSEEEEE-ESSCSSSCEECCCCSSHHHHHHHHHT
T ss_pred HhCCccCCeEEEE-ECCeEeeeEEecCCCCHHHHHHHHHH
Confidence 9999999999888 55543 3457888888888888765
|
| >d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Predicted hydrolases Cof domain: Phosphoglycolate phosphatase, PGPase species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.96 E-value=7.4e-10 Score=114.93 Aligned_cols=90 Identities=18% Similarity=0.123 Sum_probs=65.3
Q ss_pred ChHhHHHHHHHCCCCCCCccEEEEc---CCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcC
Q 001380 191 DRIKVDANLAAAGLPVSMFDAIVSA---DAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTT 267 (1089)
Q Consensus 191 ~~~~~~~~l~~~gl~~~~fd~i~~~---~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~ 267 (1089)
..+.++.++++++.. +....+. +....+.+++..++.+++++|++++++++|||+.||+.|++.+|+ .|..
T Consensus 120 ~~~~~~~~~~~~~~~---~~~~~~~~~iei~~~~~~K~~al~~l~~~~~i~~~~~~~iGD~~NDi~ml~~ag~---~vav 193 (230)
T d1wr8a_ 120 NVETVREIINELNLN---LVAVDSGFAIHVKKPWINKGSGIEKASEFLGIKPKEVAHVGDGENDLDAFKVVGY---KVAV 193 (230)
T ss_dssp CHHHHHHHHHHTTCS---CEEEECSSCEEEECTTCCHHHHHHHHHHHHTSCGGGEEEEECSGGGHHHHHHSSE---EEEC
T ss_pred cHHHHHHHHHHhccc---eEEeeCCcEEEEeeCCcCcchhhcccccccccchhheeeeecCccHHHHHHHCCe---EEEE
Confidence 455667777777664 2112211 223457889999999999999999999999999999999999994 3444
Q ss_pred CCCHHHHhhcCCcEEecCcc
Q 001380 268 TLSEERLKEASPSLIRKEIG 287 (1089)
Q Consensus 268 g~~~~~l~~~~~d~vi~dl~ 287 (1089)
+...+.+++ .+++|+.+..
T Consensus 194 ~na~~~~k~-~A~~v~~~~~ 212 (230)
T d1wr8a_ 194 AQAPKILKE-NADYVTKKEY 212 (230)
T ss_dssp TTSCHHHHT-TCSEECSSCH
T ss_pred CCCCHHHHH-hCCEEECCCC
Confidence 444455555 5899987654
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=98.96 E-value=1.8e-08 Score=115.43 Aligned_cols=172 Identities=17% Similarity=0.322 Sum_probs=98.9
Q ss_pred CCCCCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecC-CCCCCCCCCCCccccCCcceeEEeeC---CCE
Q 001380 595 LFTSPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSS-GEEGLRDGSFDDATFNRPQGLAYNAK---KNL 670 (1089)
Q Consensus 595 ~~~~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~-g~~g~~dG~~~~~~f~~P~gla~d~~---g~~ 670 (1089)
.+++.|..|++|++.+ +|+|||+....++|++++.++.....+... ......+| -.--.||+++|+ ...
T Consensus 21 ~ia~~L~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~g------e~GLLgia~~Pdf~~n~~ 93 (450)
T d1crua_ 21 VILSNLNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADG------QNGLLGFAFHPDFKNNPY 93 (450)
T ss_dssp EEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTS------SCSEEEEEECTTTTTSCE
T ss_pred EEECCCCCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCC------CCceeeEEeCCCCccCCE
Confidence 5577899999999997 899999998889999998765444443332 11111111 012368999984 456
Q ss_pred EEEEEC---------C--C-CEEEEEECCCC--eE---EEE-ecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEE
Q 001380 671 LYVADT---------E--N-HALREIDFVND--TV---RTL-AGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYI 732 (1089)
Q Consensus 671 lyVaD~---------~--n-~~I~~~d~~~g--~v---~~~-ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyv 732 (1089)
||++-+ . + ..|+++..+.. .. +.+ ......+ -..-..|+++++| .|||
T Consensus 94 iYvsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~-------------~H~gg~l~fgpDG-~LYv 159 (450)
T d1crua_ 94 IYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSK-------------DHQSGRLVIGPDQ-KIYY 159 (450)
T ss_dssp EEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCS-------------SCCEEEEEECTTS-CEEE
T ss_pred EEEEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccc-------------cccccceeEcCCC-CEEE
Confidence 999743 1 1 13444443221 11 111 1111000 1234579999987 8999
Q ss_pred EECCC--------------------------------cEEEEEECCCCeEEEEeCCCccccCCC--CCCCCccccCCceE
Q 001380 733 AMAGQ--------------------------------HQIWEHSTVDGVTRAFSGDGYERNLNG--SSSLNTSFAQPSGI 778 (1089)
Q Consensus 733 ad~~~--------------------------------~~I~~~~~~~g~~~~~~g~g~~~~~~g--~~~~~~~~~~P~gl 778 (1089)
+.... ++|.++++++.... .+. ..++ ..-...++.+|.|+
T Consensus 160 s~Gd~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~---dnP---~~~~~~~ei~a~G~RNp~g~ 233 (450)
T d1crua_ 160 TIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPK---DNP---SFNGVVSHIYTLGHRNPQGL 233 (450)
T ss_dssp EECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCT---TCC---EETTEECSEEEBCCSEEEEE
T ss_pred EecCCCcccccccccccccccCcccccccccccccccCceEEeeccccccc---ccc---ccccccceEEEeccccccce
Confidence 86531 34555554322100 000 0000 01134678999999
Q ss_pred EEcCCCCEEEEEeCCC
Q 001380 779 SLSPDFMEIYVADSES 794 (1089)
Q Consensus 779 av~~~g~~lyvad~~~ 794 (1089)
+++++| .||++|.+.
T Consensus 234 ~~~p~g-~l~~~e~G~ 248 (450)
T d1crua_ 234 AFTPNG-KLLQSEQGP 248 (450)
T ss_dssp EECTTS-CEEEEEECS
T ss_pred eecccc-eeeeccccc
Confidence 999987 899999753
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.93 E-value=1.1e-08 Score=114.22 Aligned_cols=263 Identities=13% Similarity=0.041 Sum_probs=145.1
Q ss_pred eEEEeecCCeEEEEeCC---------CCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEE
Q 001380 605 KLAIDILNNRLFISDSN---------HNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVA 674 (1089)
Q Consensus 605 ~vavd~~~g~L~vsd~~---------~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVa 674 (1089)
.+++++++..||++... .+.|.++|.. ++.+..+..+...- ...-..|.+++++++|++|||+
T Consensus 69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~-------~~~g~~p~~~a~SpDGk~l~va 141 (368)
T d1mdah_ 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR-------FSVGPRVHIIGNCASSACLLFF 141 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS-------CCBSCCTTSEEECTTSSCEEEE
T ss_pred cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccce-------ecccCCccceEECCCCCEEEEE
Confidence 68999877789988742 3469999986 67766665432110 1123468999999999999999
Q ss_pred ECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEE-
Q 001380 675 DTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAF- 753 (1089)
Q Consensus 675 D~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~- 753 (1089)
+...+.|+.+|+.++.+........ ...+.+.++..+++....+.++.++...+.....
T Consensus 142 ~~~~~~v~~~d~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~ 201 (368)
T d1mdah_ 142 LFGSSAAAGLSVPGASDDQLTKSAS--------------------CFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGI 201 (368)
T ss_dssp ECSSSCEEEEEETTTEEEEEEECSS--------------------CCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEE
T ss_pred eCCCCeEEEEECCCCcEeEEeeccC--------------------cceEccCCCceEEEEcCCCCEEEEEecCCceeeee
Confidence 9888999999999988766543211 0011112223334433344444444332221111
Q ss_pred eCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCC-ccc
Q 001380 754 SGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDG-MGS 832 (1089)
Q Consensus 754 ~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg-~~~ 832 (1089)
....... ..-..+.....++++ .++... .+.++.++..++....+..... .... ...
T Consensus 202 ~~~~~~~---------~~~~~~~~~~~~~~g-~~~~~~--~~~v~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 259 (368)
T d1mdah_ 202 VGAQCTG---------AQNCSSQAAQANYPG-MLVWAV--ASSILQGDIPAAGATMKAAIDG----------NESGRKAD 259 (368)
T ss_dssp CCCCSCT---------TSCBCSCCEEETTTT-EEEECB--SSCCEEEECCSSCCEEECCCCS----------SCTHHHHT
T ss_pred eeccccc---------ccccceeecccccCc-EEEEec--CCCEEEEeecCCceEEEeeccc----------ccceeeee
Confidence 1110000 111123344444444 332222 2234444444333332211000 0000 000
Q ss_pred cccccCceEEEEccCC-cEEEEeCC--------CCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCC
Q 001380 833 EVLLQHPLGVYCAKNG-QIYVADSY--------NHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNG 903 (1089)
Q Consensus 833 ~~~l~~P~gva~~~~G-~lyVaD~~--------n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G 903 (1089)
...-..+..+++++++ .+||+... ..+|.++|..++........+ ..|.++++.+||
T Consensus 260 ~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~--------------~~~~~~a~spDG 325 (368)
T d1mdah_ 260 NFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG--------------HDSDAIIAAQDG 325 (368)
T ss_dssp TEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE--------------EEECEEEECCSS
T ss_pred eecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCC--------------CceeEEEECCCC
Confidence 0011124457888776 58887533 246889999877644322111 348899999998
Q ss_pred c--EEEEECCCCEEEEEeCCCCCceEEEEe
Q 001380 904 N--LFIADTNNNIIRYLDLNKEEPELQTLE 931 (1089)
Q Consensus 904 ~--lyVad~~n~~I~~~~~~~~~~~~~~l~ 931 (1089)
+ ||++..+++.|.++|..+. ..+.++.
T Consensus 326 ~~~ly~s~~~~~~v~v~D~~tg-k~~~~i~ 354 (368)
T d1mdah_ 326 ASDNYANSAGTEVLDIYDAASD-QDQSSVE 354 (368)
T ss_dssp SCEEEEEETTTTEEEEEESSSC-EEEEECC
T ss_pred CEEEEEEeCCCCeEEEEECCCC-CEEEEEE
Confidence 5 8999999999999999877 3455555
|
| >d1yj5a1 c.108.1.9 (A:144-338) 5' polynucleotide kinase-3' phosphatase, middle domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: phosphatase domain of polynucleotide kinase domain: 5' polynucleotide kinase-3' phosphatase, middle domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.93 E-value=6.5e-10 Score=110.67 Aligned_cols=95 Identities=21% Similarity=0.304 Sum_probs=79.4
Q ss_pred CCccHHHHHHHHHhCCCeEEEEcCC--------Ch----HhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHH
Q 001380 166 GFPGALELINQCKSKGLKVAVASSA--------DR----IKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASK 233 (1089)
Q Consensus 166 ~~pG~~~lL~~Lk~~Gi~vaIvSn~--------~~----~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~ 233 (1089)
++|++.+.|+.|+++|+.++|+||- .. .....+++.++.. ++..++.......||.+.|+..+++
T Consensus 51 l~~~v~~~i~~L~~~gy~iiIvTNQ~gI~rg~~s~~~~~~~~~~i~~~l~~~---~~i~~~~~~~~~RKP~~GM~~~~~~ 127 (195)
T d1yj5a1 51 LYPEIPKKLQELAAEGYKLVIFTNQMGIGRGKLPAEVFKGKVEAVLEKLGVP---FQVLVATHAGLNRKPVSGMWDHLQE 127 (195)
T ss_dssp SCTTHHHHHHHHHHHTCEEEEEEECHHHHHTSSCHHHHHHHHHHHHHHHTSC---CEEEEECSSSSSSTTSTHHHHHHHH
T ss_pred ccCCHHHHHHHHHhCCcEEEEecCcchhccCCcCHHHHHHHHHHHHHHcCCC---ccEEEecCccccCCCccHHHHHHHH
Confidence 4799999999999999999999992 22 3345667777775 5666777777789999999999999
Q ss_pred HcC----CCCCcEEEEcCCh-----------------hhHHHHHHcCCeEE
Q 001380 234 ILN----VPTSECIVIEDAL-----------------AGVQAAKAAQMRCI 263 (1089)
Q Consensus 234 ~lg----v~p~~~v~VGD~~-----------------~Di~aA~~aG~~~i 263 (1089)
+++ ++.++++||||.. +|++.|.++|+++.
T Consensus 128 ~~n~~~~id~~~S~~IGD~~gr~~~~~~~~~~~D~S~sD~~fA~N~gikF~ 178 (195)
T d1yj5a1 128 QANEGIPISVEDSVFVGDAAGRLANWAPGRKKKDFSCADRLFALNVGLPFA 178 (195)
T ss_dssp TSSSSCCCCGGGCEEECSCCCBCTTSBTTBCSCCSCCHHHHHHHHHTCCEE
T ss_pred HhcccccCCcCceEEEeCccCccccccccccccCcchhHHHHHHHCCCccc
Confidence 985 7889999999954 99999999999853
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.92 E-value=8.7e-08 Score=109.40 Aligned_cols=195 Identities=8% Similarity=-0.036 Sum_probs=140.9
Q ss_pred CEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCC
Q 001380 669 NLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDG 748 (1089)
Q Consensus 669 ~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g 748 (1089)
+.++|+....+.|..+|.+++++......|. .|++++|+|+|+++|+++. .+.|..+|..++
T Consensus 32 ~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-----------------~~~~v~fSpDG~~l~~~s~-dg~v~~~d~~t~ 93 (432)
T d1qksa2 32 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-----------------AVHISRLSASGRYLFVIGR-DGKVNMIDLWMK 93 (432)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEECSS-----------------CEEEEEECTTSCEEEEEET-TSEEEEEETTSS
T ss_pred cEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-----------------CeeEEEECCCCCEEEEEcC-CCCEEEEEeeCC
Confidence 5568999999999999999877666554442 6899999999999999875 578889997765
Q ss_pred eEE---EEeCCCccccCCCCCCCCccccCCceEEE----cCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecC-CCCCCCC
Q 001380 749 VTR---AFSGDGYERNLNGSSSLNTSFAQPSGISL----SPDFMEIYVADSESSSIRALNLKTGGSRLLAGG-DPIFPDN 820 (1089)
Q Consensus 749 ~~~---~~~g~g~~~~~~g~~~~~~~~~~P~glav----~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~-~~~~~~~ 820 (1089)
... .+.. ...|.++++ ++||+.||++.+..+.|+.++..++........ .....
T Consensus 94 ~~~~~~~i~~----------------~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~-- 155 (432)
T d1qksa2 94 EPTTVAEIKI----------------GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYD-- 155 (432)
T ss_dssp SCCEEEEEEC----------------CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTT--
T ss_pred CceEEEEEec----------------CCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCcccc--
Confidence 422 2221 123556655 568989999999999999999988776533221 11000
Q ss_pred ccccCCCCCccccccccCceEEEEccCC-cEEEEeCCCCEEEEEeCCCCeE---EEEeccCCCCCCCCcccccccCCCce
Q 001380 821 LFKFGDRDGMGSEVLLQHPLGVYCAKNG-QIYVADSYNHKIKKLDPASNRV---STLAGIGKAGFKDGAALAAQLSEPAG 896 (1089)
Q Consensus 821 l~~~g~~dg~~~~~~l~~P~gva~~~~G-~lyVaD~~n~~I~~~d~~~~~v---~t~~g~g~~g~~~g~~~~~~l~~P~g 896 (1089)
.-.++ .-..+.+|+++++| .+||+....++|..+|..+... .++. .+ ..|.+
T Consensus 156 ~~~~~---------~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~-~g--------------~~~~~ 211 (432)
T d1qksa2 156 EQEYH---------PEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AE--------------RFLHD 211 (432)
T ss_dssp TCCEE---------SCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CC--------------SSEEE
T ss_pred ceecc---------CCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEc-cc--------------Ccccc
Confidence 00011 12346788899988 4788999999999999876543 2332 11 34899
Q ss_pred EEEccCCc-EEEEECCCCEEEEEeCCCC
Q 001380 897 IIEAQNGN-LFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 897 i~vd~~G~-lyVad~~n~~I~~~~~~~~ 923 (1089)
++++++|+ +|++....+.|..++....
T Consensus 212 ~~~spdg~~~~va~~~~~~v~v~d~~~~ 239 (432)
T d1qksa2 212 GGLDGSHRYFITAANARNKLVVIDTKEG 239 (432)
T ss_dssp EEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred ceECCCCCEEEEeccccceEEEeecccc
Confidence 99999997 8999999999999999887
|
| >d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Predicted hydrolases Cof domain: Phosphoglycolate phosphatase, PGPase species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.91 E-value=7.8e-10 Score=114.77 Aligned_cols=73 Identities=8% Similarity=0.061 Sum_probs=56.2
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhc
Q 001380 221 LKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTG 297 (1089)
Q Consensus 221 ~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~ 297 (1089)
...+...++.+++++|++++++++|||+.||+.+.+.+|. .|..+...+.+++ .++++++.-..-.+..+++.
T Consensus 149 ~~~K~~ai~~l~~~~~i~~~~v~~~GDs~nD~~m~~~a~~---~vav~na~~~~k~-~ad~v~~~~~~~gi~~~l~~ 221 (225)
T d1l6ra_ 149 GEDKAFAVNKLKEMYSLEYDEILVIGDSNNDMPMFQLPVR---KACPANATDNIKA-VSDFVSDYSYGEEIGQIFKH 221 (225)
T ss_dssp TCSHHHHHHHHHHHTTCCGGGEEEECCSGGGHHHHTSSSE---EEECTTSCHHHHH-HCSEECSCCTTHHHHHHHHH
T ss_pred ccchHHHHHHHhhhhccchhheeeecCCcchHHHHHHCCe---EEEECCCcHHHHH-hCCEEECCCCcCHHHHHHHH
Confidence 4456788999999999999999999999999999999994 3333444555655 48999887766555665544
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.88 E-value=5.2e-07 Score=97.46 Aligned_cols=219 Identities=11% Similarity=0.028 Sum_probs=141.4
Q ss_pred CCCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC---
Q 001380 601 KFPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT--- 676 (1089)
Q Consensus 601 ~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~--- 676 (1089)
..|..++++|++..|||+...++.|.++|.+ |+.+..+..... ......|.+++++++|+.+|++..
T Consensus 34 ~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~---------~~~~~~~~~v~~s~dg~~l~~~~~~~~ 104 (337)
T d1pbyb_ 34 PTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP---------EERVKSLFGAALSPDGKTLAIYESPVR 104 (337)
T ss_dssp TCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT---------TEEEECTTCEEECTTSSEEEEEEEEEE
T ss_pred CCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCC---------cccccceeeEEEcCCCcEEEEeecCCc
Confidence 5688999998666789999999999999986 777776654311 122457889999999999999864
Q ss_pred --------CCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCC
Q 001380 677 --------ENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDG 748 (1089)
Q Consensus 677 --------~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g 748 (1089)
....+..+|..++.+......+ ..|.+++++++|..+|+++ +.+..+|..++
T Consensus 105 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-----------------~~~~~~~~s~dg~~l~~~~---~~~~~~d~~~~ 164 (337)
T d1pbyb_ 105 LELTHFEVQPTRVALYDAETLSRRKAFEAP-----------------RQITMLAWARDGSKLYGLG---RDLHVMDPEAG 164 (337)
T ss_dssp ECSSCEEECCCEEEEEETTTTEEEEEEECC-----------------SSCCCEEECTTSSCEEEES---SSEEEEETTTT
T ss_pred ceeeeccccccceeeccccCCeEEEecccc-----------------CCceEEEEcCCCCEEEEEc---CCcceeeeecC
Confidence 3457778888887766554322 2688999999999998875 33556777776
Q ss_pred eEEEEeCCCcccc-----CCCC-------CC----------------------------------------CCccccCCc
Q 001380 749 VTRAFSGDGYERN-----LNGS-------SS----------------------------------------LNTSFAQPS 776 (1089)
Q Consensus 749 ~~~~~~g~g~~~~-----~~g~-------~~----------------------------------------~~~~~~~P~ 776 (1089)
.+......+.... .++. .. ....-..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (337)
T d1pbyb_ 165 TLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYF 244 (337)
T ss_dssp EEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEE
T ss_pred cEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceE
Confidence 5443221110000 0000 00 000011234
Q ss_pred eEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc-EEEEeC
Q 001380 777 GISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ-IYVADS 855 (1089)
Q Consensus 777 glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~-lyVaD~ 855 (1089)
.+++++++..+|+++ +.|+.++..++........ -..|.++++++||+ +|++.
T Consensus 245 ~~~~~~~~~~~~~~~---~~i~v~d~~~~~~~~~~~~----------------------~~~~~~~~~s~dG~~l~v~~- 298 (337)
T d1pbyb_ 245 STAVNPAKTRAFGAY---NVLESFDLEKNASIKRVPL----------------------PHSYYSVNVSTDGSTVWLGG- 298 (337)
T ss_dssp EEEECTTSSEEEEEE---SEEEEEETTTTEEEEEEEC----------------------SSCCCEEEECTTSCEEEEES-
T ss_pred EEEecccceEEEEcc---ccEEEEECCCCcEEEEEcC----------------------CCCEEEEEECCCCCEEEEEe-
Confidence 456667766666665 5677888776554322110 12478999999995 78875
Q ss_pred CCCEEEEEeCCCCe-EEEEe
Q 001380 856 YNHKIKKLDPASNR-VSTLA 874 (1089)
Q Consensus 856 ~n~~I~~~d~~~~~-v~t~~ 874 (1089)
..+.|.++|..+.+ +.++.
T Consensus 299 ~~~~i~v~D~~t~~~v~~i~ 318 (337)
T d1pbyb_ 299 ALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp BSSEEEEEETTTCCEEEEEE
T ss_pred CCCcEEEEECCCCcEEEEEE
Confidence 45789999987654 44554
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.88 E-value=3.1e-06 Score=93.25 Aligned_cols=162 Identities=10% Similarity=0.036 Sum_probs=115.9
Q ss_pred ceEEEeecCCeEEEEeCCC----CEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC-
Q 001380 604 GKLAIDILNNRLFISDSNH----NRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE- 677 (1089)
Q Consensus 604 ~~vavd~~~g~L~vsd~~~----~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~- 677 (1089)
..+++.|++.++|+++..+ .+|.++|.. |+.+.++..+ .+.+++++|+|.+||++...
T Consensus 24 ~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~----------------~~~~~a~SpDG~~l~va~~~~ 87 (373)
T d2madh_ 24 NDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG----------------FLPNPVAAHSGSEFALASTSF 87 (373)
T ss_pred cccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCC----------------CCccEEEcCCCCEEEEEeecC
Confidence 3567788888999987644 578999875 8888776543 22479999999999999643
Q ss_pred --------CCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC-CcEEEEEECCCC
Q 001380 678 --------NHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG-QHQIWEHSTVDG 748 (1089)
Q Consensus 678 --------n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~-~~~I~~~~~~~g 748 (1089)
.+.|+.+|..++++......... ........|++++++++++.+|+.... .+.+..++....
T Consensus 88 ~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~---------~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~ 158 (373)
T d2madh_ 88 SRIAKGKRTDYVEVFDPVTFLPIADIELPDA---------PRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGS 158 (373)
T ss_pred CcccccccceEEEEEECCCCcEEEEEecCCc---------ceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCC
Confidence 36789999988776544322211 111224578999999999999888754 345555665544
Q ss_pred eEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeE
Q 001380 749 VTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR 808 (1089)
Q Consensus 749 ~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~ 808 (1089)
..... ...|.+++++++|+.+|++.+..+++..++..++...
T Consensus 159 ~~~~~------------------~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~ 200 (373)
T d2madh_ 159 SDDQL------------------LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAG 200 (373)
T ss_pred eEEEE------------------eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceee
Confidence 43222 2357789999999999999999999999998866554
|
| >d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.87 E-value=1.8e-10 Score=110.04 Aligned_cols=86 Identities=21% Similarity=0.373 Sum_probs=68.7
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCC--CEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDM--PFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~--~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
.+|.|||.||++||++|+++.|.+.++++.|++. .+.++.+ |.+..+++
T Consensus 29 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~-----------------------------d~~~~~~~ 79 (140)
T d2b5ea1 29 PKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKL-----------------------------DHTENDVR 79 (140)
T ss_dssp TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEE-----------------------------EGGGCCCS
T ss_pred CCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEee-----------------------------eccchhcc
Confidence 4688999999999999999999999999998743 3555555 33445778
Q ss_pred HhCCCceeEEEEECCCCcEEE--EecCCCchhhHHHHHHH
Q 001380 530 ELGVNSWPTFAVVGPNGKLLA--QLAGEGHRKDLDDLVEA 567 (1089)
Q Consensus 530 ~~~v~~~Pt~~lid~~G~i~~--~~~G~~~~~~l~~~l~~ 567 (1089)
.|+|.++|+++++ ++|+... .+.|..+.+.+.++|++
T Consensus 80 ~~~v~~~Ptl~~f-~~g~~~~~~~y~G~~t~~~l~~fi~~ 118 (140)
T d2b5ea1 80 GVVIEGYPTIVLY-PGGKKSESVVYQGSRSLDSLFDFIKE 118 (140)
T ss_dssp SCCCSSSSEEEEE-CCTTSCCCCBCCSCCCHHHHHHHHHH
T ss_pred ccccccCCeEEEE-ECCEEcceeEeCCCCCHHHHHHHHHH
Confidence 8999999999999 4665543 36788888888888875
|
| >d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein p19, TLP19 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=1.1e-09 Score=103.75 Aligned_cols=98 Identities=12% Similarity=0.145 Sum_probs=65.9
Q ss_pred cccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcC-CCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhH
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYK-DMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNL 527 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~-~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l 527 (1089)
+...||++||+|||+||++|+.+.|.+.+..+.++ ...+..|.|.. +....+
T Consensus 21 A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~---------------------------~~~~~~ 73 (135)
T d1sena_ 21 AAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLED---------------------------EEEPKD 73 (135)
T ss_dssp HHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEG---------------------------GGSCSC
T ss_pred HHHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCC---------------------------CcCHHH
Confidence 34579999999999999999999999877655433 23577777732 111112
Q ss_pred HH-HhCCCceeEEEEECCCCcEEEEecCC----------CchhhHHHHHHHHHHHhc
Q 001380 528 WR-ELGVNSWPTFAVVGPNGKLLAQLAGE----------GHRKDLDDLVEAALLFYG 573 (1089)
Q Consensus 528 ~~-~~~v~~~Pt~~lid~~G~i~~~~~G~----------~~~~~l~~~l~~~l~~~~ 573 (1089)
.. .+....+|+++++|++|+++....|. ...+.+.+.++++++...
T Consensus 74 ~~~~~~~~~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 130 (135)
T d1sena_ 74 EDFSPDGGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERLT 130 (135)
T ss_dssp GGGCTTCSCSSEEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHHHHG
T ss_pred HHHHhhcccceeEEEECCCCeEEEEecCCCCCcchhccCCCHHHHHHHHHHHHHHhh
Confidence 21 23445689999999999998776663 234555555556665543
|
| >d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: N-terminal, Prx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=98.80 E-value=1.2e-08 Score=99.49 Aligned_cols=118 Identities=14% Similarity=0.073 Sum_probs=85.9
Q ss_pred CCCCCCCCccccCCCCC---ceeecccc-cCCCEEEEEEe-cCCCcchhhhhhhHHHHHH---HcCCCCEEEEEEeCCCC
Q 001380 426 TTPIVPEFPAKLDWLNT---APLQFRRD-LKGKVVVLDFW-TYCCINCMHVLPDLEFLEK---KYKDMPFTVVGVHSAKF 497 (1089)
Q Consensus 426 ~g~~~P~f~~~~~~~~g---~~~~l~~~-~~gk~vll~Fw-a~wC~~C~~~~p~l~~l~~---~~~~~~v~vi~v~~~~~ 497 (1089)
.|+.+|+|++... .| +.+++ ++ ++||+|||.|+ +.+++.|..++..+..... +.+..+.++++++
T Consensus 3 ~Gd~~Pdftl~~~--~~~~~~~~sl-sd~~~gk~VVL~f~P~afTp~Ct~e~~~~~~~~~~~~~~~~~~~vv~~~s---- 75 (163)
T d1nm3a2 3 EGKKVPQVTFRTR--QGDKWVDVTT-SELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSV---- 75 (163)
T ss_dssp TTSBCCCCEEEEE--ETTEEEEEEH-HHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEES----
T ss_pred CCCCCCCeEEEEE--cCCCceEEEH-HHHhCCCeEEEEEEeccccccchhhhhhhhhhcchhhhhhcccceeeeec----
Confidence 6999999997543 44 36888 66 59999999999 8899999999877655532 2233345555553
Q ss_pred CChhcHHHHHHHHHH-cCCccceeecCChhHHHHhCC-----------CceeEEEEECCCCcEEEEecC
Q 001380 498 DNEKDLEAIRNAVLR-YGISHPVVNDGDMNLWRELGV-----------NSWPTFAVVGPNGKLLAQLAG 554 (1089)
Q Consensus 498 ~~~~~~~~~~~~~~~-~~~~~~v~~d~~~~l~~~~~v-----------~~~Pt~~lid~~G~i~~~~~G 554 (1089)
++.....++.++ ....++++.|....+++.||+ .....+|||| +|+|++.+..
T Consensus 76 ---~d~~~~~a~~~~~~~~~~~llsD~~~~~~~~~g~~~~~~~~g~g~~s~R~~~Iid-dG~I~~~~v~ 140 (163)
T d1nm3a2 76 ---NDTFVMNAWKEDEKSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLVK-NGVVEKMFIE 140 (163)
T ss_dssp ---SCHHHHHHHHHHTTCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEEE-TTEEEEEEEC
T ss_pred ---CCHHHHHHHhhhhccCceeeeccCChHHHHHhhhhccccccccccccceEEEEEe-CCEEEEEEEe
Confidence 344444444444 456689999999999999986 2567899998 9999888654
|
| >d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Calsequestrin domain: Calsequestrin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.80 E-value=5.5e-09 Score=97.04 Aligned_cols=90 Identities=18% Similarity=0.106 Sum_probs=71.9
Q ss_pred CCCEEEEEEecCCCcch------hhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCCh
Q 001380 452 KGKVVVLDFWTYCCINC------MHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDM 525 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C------~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~ 525 (1089)
+.+.++|.||++||++| ....+.+..+++.+.+.++.+..|.+ +.+.
T Consensus 27 ~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~---------------------------~~~~ 79 (124)
T d1a8ya1 27 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDS---------------------------EKDA 79 (124)
T ss_dssp HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEET---------------------------TTSH
T ss_pred hCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEe---------------------------eccc
Confidence 45789999999999864 34445555556666666788888865 5577
Q ss_pred hHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 526 NLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 526 ~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
.+++.|+|.++||++++ .+|+.+ .+.|..+.+.+.++|.++++
T Consensus 80 ~l~~~~~I~~yPTi~~f-~~g~~~-~y~G~r~~~~l~~fi~~~l~ 122 (124)
T d1a8ya1 80 AVAKKLGLTEEDSIYVF-KEDEVI-EYDGEFSADTLVEFLLDVLE 122 (124)
T ss_dssp HHHHTTTCCSTTCEEEE-ESSSEE-ECCSCCSHHHHHHHHHHHHS
T ss_pred chhhccccccCCcEEEe-ccCccE-EeeCCCCHHHHHHHHHHhcC
Confidence 89999999999999999 577775 68899999999999988774
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.79 E-value=5.7e-07 Score=102.06 Aligned_cols=209 Identities=8% Similarity=-0.005 Sum_probs=141.7
Q ss_pred CcceeEEeeC-CCEEEEEECCCCEEEEEECCCCeE-EEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC
Q 001380 658 RPQGLAYNAK-KNLLYVADTENHALREIDFVNDTV-RTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA 735 (1089)
Q Consensus 658 ~P~gla~d~~-g~~lyVaD~~n~~I~~~d~~~g~v-~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~ 735 (1089)
.|..+.++.+ .+.++|+...++.|+.+|+.++++ .++. .| ..|++|+|+|+|+++|++..
T Consensus 20 ~p~~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~-~g-----------------~~~~~vafSPDGk~l~~~~~ 81 (426)
T d1hzua2 20 RPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVID-TG-----------------YAVHISRMSASGRYLLVIGR 81 (426)
T ss_dssp SCSSCCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEE-CC-----------------SSEEEEEECTTSCEEEEEET
T ss_pred CCCcccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEe-CC-----------------CCeeEEEECCCCCEEEEEeC
Confidence 4555555554 355779999999999999998775 4553 23 26899999999999999875
Q ss_pred CCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEE----cCCCCEEEEEeCCCCeEEEEEcCCCCeEEEe
Q 001380 736 GQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISL----SPDFMEIYVADSESSSIRALNLKTGGSRLLA 811 (1089)
Q Consensus 736 ~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav----~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~ 811 (1089)
.+.|..||..++.......- .....|.++++ +|||++||++....+.++.++..++......
T Consensus 82 -d~~v~vwd~~t~~~~~~~~i-------------~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~ 147 (426)
T d1hzua2 82 -DARIDMIDLWAKEPTKVAEI-------------KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIV 147 (426)
T ss_dssp -TSEEEEEETTSSSCEEEEEE-------------ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEE
T ss_pred -CCCEEEEEccCCceeEEEEE-------------eCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEe
Confidence 46899999887754322200 00113444544 5789999999999999999999887765433
Q ss_pred cCCCCCCCCccccCCCCCccccccccCceEEEEccCC-cEEEEeCCCCEEEEEeCCCCe---EEEEeccCCCCCCCCccc
Q 001380 812 GGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNG-QIYVADSYNHKIKKLDPASNR---VSTLAGIGKAGFKDGAAL 887 (1089)
Q Consensus 812 g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G-~lyVaD~~n~~I~~~d~~~~~---v~t~~g~g~~g~~~g~~~ 887 (1089)
.+..... ....+. .-..+..++.++++ .++++....++|..++..... +.++. .
T Consensus 148 ~~~~~~~-~~~~~~---------~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~----------- 205 (426)
T d1hzua2 148 STRGMTV-DTQTYH---------PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-A----------- 205 (426)
T ss_dssp ECCEECS-SSCCEE---------SCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEE-C-----------
T ss_pred eccCCCc-cceeec---------CCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEec-c-----------
Confidence 2110000 000000 01235667778887 578888888888887654432 22222 2
Q ss_pred ccccCCCceEEEccCCc-EEEEECCCCEEEEEeCCCC
Q 001380 888 AAQLSEPAGIIEAQNGN-LFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 888 ~~~l~~P~gi~vd~~G~-lyVad~~n~~I~~~~~~~~ 923 (1089)
-..|.+++++++|+ +|++..+.+.+..++....
T Consensus 206 ---~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~ 239 (426)
T d1hzua2 206 ---APFLADGGWDSSHRYFMTAANNSNKVAVIDSKDR 239 (426)
T ss_dssp ---CSSEEEEEECTTSCEEEEEETTCSEEEEEETTTT
T ss_pred ---CCccEeeeECCCCcEEEeeeecccceeeeecccc
Confidence 24589999999886 8999999999999999887
|
| >d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=98.78 E-value=1.6e-09 Score=99.63 Aligned_cols=86 Identities=21% Similarity=0.343 Sum_probs=63.2
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCE---EEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPF---TVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLW 528 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v---~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~ 528 (1089)
.+|++||+||++||++|+.+.|.+.++++++..... ..+.. +......
T Consensus 19 ~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~-----------------------------~~~~~~~ 69 (116)
T d2djja1 19 DTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAK-----------------------------VDATAND 69 (116)
T ss_dssp TTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEE-----------------------------EETTTSC
T ss_pred CCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEe-----------------------------cccchhh
Confidence 468999999999999999999999999999976422 22222 1122344
Q ss_pred HHhCCCceeEEEEECCCCcE--EEEecCCCchhhHHHHHHH
Q 001380 529 RELGVNSWPTFAVVGPNGKL--LAQLAGEGHRKDLDDLVEA 567 (1089)
Q Consensus 529 ~~~~v~~~Pt~~lid~~G~i--~~~~~G~~~~~~l~~~l~~ 567 (1089)
..|+|.++||++++ ++|+. ...+.|..+.+.+.++|++
T Consensus 70 ~~~~v~~~Pti~~f-~~g~~~~~~~~~g~~~~~~l~~fi~~ 109 (116)
T d2djja1 70 VPDEIQGFPTIKLY-PAGAKGQPVTYSGSRTVEDLIKFIAE 109 (116)
T ss_dssp CSSCCSSSSEEEEE-CSSCTTSCCCCCCCSCHHHHHHHHHH
T ss_pred hcccccCCCEEEEE-ECCccCceEEecCCCCHHHHHHHHHH
Confidence 57899999999999 44432 2346788888888888764
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.77 E-value=3.4e-06 Score=91.09 Aligned_cols=253 Identities=8% Similarity=0.033 Sum_probs=161.9
Q ss_pred CCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCE
Q 001380 602 FPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHA 680 (1089)
Q Consensus 602 ~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~ 680 (1089)
.|.-++.+|.+++|+++. .+.|++++.+ ++....+.+. . .....++++|+|++|..++ .++.
T Consensus 19 ~~~~~a~~~~g~~l~~~~--~~~v~i~~~~~~~~~~~~~~H-~-------------~~v~~~~~sp~g~~latg~-~dg~ 81 (311)
T d1nr0a1 19 TAVVLGNTPAGDKIQYCN--GTSVYTVPVGSLTDTEIYTEH-S-------------HQTTVAKTSPSGYYCASGD-VHGN 81 (311)
T ss_dssp CCCCCEECTTSSEEEEEE--TTEEEEEETTCSSCCEEECCC-S-------------SCEEEEEECTTSSEEEEEE-TTSE
T ss_pred CeEEEEEcCCCCEEEEEe--CCEEEEEECCCCceeEEEcCC-C-------------CCEEEEEEeCCCCeEeccc-cCce
Confidence 466788998777776664 4578888876 4555554322 1 2458899999999555544 5788
Q ss_pred EEEEECCCCe---EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC-CcEEEEEECCCCeEE-EEeC
Q 001380 681 LREIDFVNDT---VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG-QHQIWEHSTVDGVTR-AFSG 755 (1089)
Q Consensus 681 I~~~d~~~g~---v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~-~~~I~~~~~~~g~~~-~~~g 755 (1089)
|+.+|..++. ..++.+.. ....+|+|++++..|.++..+ ...+..++.+.+... .+.
T Consensus 82 i~iwd~~~~~~~~~~~~~~~~-----------------~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~- 143 (311)
T d1nr0a1 82 VRIWDTTQTTHILKTTIPVFS-----------------GPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLT- 143 (311)
T ss_dssp EEEEESSSTTCCEEEEEECSS-----------------SCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCC-
T ss_pred Eeeeeeecccccccccccccc-----------------Ccccccccccccccccccccccccccccccccccccccccc-
Confidence 9999987653 22232111 245789999999777766543 233555665544321 111
Q ss_pred CCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCcccccc
Q 001380 756 DGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVL 835 (1089)
Q Consensus 756 ~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~ 835 (1089)
........++++++++.++++-+..+.|+.++..++.......+ +
T Consensus 144 --------------~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~------------~--------- 188 (311)
T d1nr0a1 144 --------------GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE------------H--------- 188 (311)
T ss_dssp --------------CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC------------C---------
T ss_pred --------------ccccccccccccccceeeeccccccccccccccccccccccccc------------c---------
Confidence 11224578999999877888888889999999886554332211 0
Q ss_pred ccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEE
Q 001380 836 LQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNII 915 (1089)
Q Consensus 836 l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I 915 (1089)
-....+++++++|+++++-...+.|+.+|..++........... .. .+.-..-..+++.++|+.+++-..++.|
T Consensus 189 ~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~-~~-----~~h~~~V~~~~~s~~~~~l~tgs~Dg~v 262 (311)
T d1nr0a1 189 TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSL-KN-----VAHSGSVFGLTWSPDGTKIASASADKTI 262 (311)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTS-SS-----CSSSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred cccccccccCcccccccccccccccccccccccccccccccccc-cc-----ccccccccccccCCCCCEEEEEeCCCeE
Confidence 11246889999998888777788999999876654433211110 00 0011234678899999877777778899
Q ss_pred EEEeCCCCCceEEEEe
Q 001380 916 RYLDLNKEEPELQTLE 931 (1089)
Q Consensus 916 ~~~~~~~~~~~~~~l~ 931 (1089)
+.+++.+. ..+.++.
T Consensus 263 ~iwd~~t~-~~~~~l~ 277 (311)
T d1nr0a1 263 KIWNVATL-KVEKTIP 277 (311)
T ss_dssp EEEETTTT-EEEEEEE
T ss_pred EEEECCCC-cEEEEEE
Confidence 99999876 2345554
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=2e-06 Score=93.77 Aligned_cols=232 Identities=11% Similarity=0.040 Sum_probs=155.7
Q ss_pred ceEEEeecCCeEEEEeCCCCEEEEEeCCCC---EEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCE
Q 001380 604 GKLAIDILNNRLFISDSNHNRIVVTDLDGN---FIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHA 680 (1089)
Q Consensus 604 ~~vavd~~~g~L~vsd~~~~~I~~~~~~g~---~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~ 680 (1089)
..+++.+ +++++++-...+.|.+++.... ....+... -.....+++++++..+ ++...++.
T Consensus 101 ~~v~~s~-dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l-~s~~~d~~ 164 (337)
T d1gxra_ 101 RSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSS--------------APACYALAISPDSKVC-FSCCSDGN 164 (337)
T ss_dssp EEEEECT-TSSEEEEEESSSEEEEEECCCC--EEEEEEECS--------------SSCEEEEEECTTSSEE-EEEETTSC
T ss_pred EEEEEcC-CCCEEEEeecccccccccccccccccccccccc--------------cccccccccccccccc-cccccccc
Confidence 4688887 5566666566789999987633 23333222 1134677888888844 44456778
Q ss_pred EEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccc
Q 001380 681 LREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYER 760 (1089)
Q Consensus 681 I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~ 760 (1089)
|+.++..++......... -.....+++++++..++++. ..+.|..||..++........
T Consensus 165 i~~~~~~~~~~~~~~~~~----------------~~~v~~l~~s~~~~~~~~~~-~d~~v~i~d~~~~~~~~~~~~---- 223 (337)
T d1gxra_ 165 IAVWDLHNQTLVRQFQGH----------------TDGASCIDISNDGTKLWTGG-LDNTVRSWDLREGRQLQQHDF---- 223 (337)
T ss_dssp EEEEETTTTEEEEEECCC----------------SSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTTEEEEEEEC----
T ss_pred cccccccccccccccccc----------------cccccccccccccccccccc-ccccccccccccceeeccccc----
Confidence 999999888766554211 12457899999887666654 467888999887764432211
Q ss_pred cCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCce
Q 001380 761 NLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPL 840 (1089)
Q Consensus 761 ~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~ 840 (1089)
-.....++++++++.|+++ ..++.|+.++...+......+ + -....
T Consensus 224 -----------~~~i~~l~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~-------------~---------~~~i~ 269 (337)
T d1gxra_ 224 -----------TSQIFSLGYCPTGEWLAVG-MESSNVEVLHVNKPDKYQLHL-------------H---------ESCVL 269 (337)
T ss_dssp -----------SSCEEEEEECTTSSEEEEE-ETTSCEEEEETTSSCEEEECC-------------C---------SSCEE
T ss_pred -----------ccceEEEEEccccccccee-ccccccccccccccccccccc-------------c---------ccccc
Confidence 1235688999998565554 456889999988665433211 1 11356
Q ss_pred EEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeC
Q 001380 841 GVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDL 920 (1089)
Q Consensus 841 gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~ 920 (1089)
+++++++|+.+++-...+.|+.+|..++......+. -.....+++.++|+.+++-..++.|+++++
T Consensus 270 ~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~--------------~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE--------------SSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC--------------SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred eEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccC--------------CCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 789999999888888889999999876655433221 133667889999987777777888988875
|
| >d1rkqa_ c.108.1.10 (A:) Hypothetical protein YidA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Predicted hydrolases Cof domain: Hypothetical protein YidA species: Escherichia coli [TaxId: 562]
Probab=98.74 E-value=3.1e-08 Score=105.42 Aligned_cols=69 Identities=14% Similarity=0.122 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHh
Q 001380 224 APDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILT 296 (1089)
Q Consensus 224 ~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~ 296 (1089)
|...++.++++++++++++++|||+.||+.|.+.+| ..|..+...+++++ .+++|+.+..+-.+.+.|+
T Consensus 198 K~~al~~l~~~~~i~~~~ii~~GD~~ND~~ml~~~~---~~~am~na~~~lk~-~a~~i~~~~~~~Gv~~~l~ 266 (271)
T d1rkqa_ 198 KGTGVKSLADVLGIKPEEIMAIGDQENDIAMIEYAG---VGVAVDNAIPSVKE-VANFVTKSNLEDGVAFAIE 266 (271)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSS---EEEECTTSCHHHHH-HCSEECCCTTTTHHHHHHH
T ss_pred cccccceehhhcccchhcEEEEeCcHhHHHHHHhCC---cEEEeCCCCHHHHH-hCCEEcCCCCcChHHHHHH
Confidence 445678889999999999999999999999999999 44455555666655 5789988777654555443
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.74 E-value=1.4e-06 Score=95.21 Aligned_cols=244 Identities=9% Similarity=-0.011 Sum_probs=139.3
Q ss_pred eEEEeecCCeEEEEeCC---------CCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEE
Q 001380 605 KLAIDILNNRLFISDSN---------HNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVA 674 (1089)
Q Consensus 605 ~vavd~~~g~L~vsd~~---------~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVa 674 (1089)
+++++|++..|||++.. .+.|.++|.. ++.+..+....... ......|.+++++++|+.+|++
T Consensus 51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~-------~~~~~~~~~~~~s~dg~~~~v~ 123 (355)
T d2bbkh_ 51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR-------FLVGTYPWMTSLTPDGKTLLFY 123 (355)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC-------CCBSCCGGGEEECTTSSEEEEE
T ss_pred ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcce-------eecCCCCceEEEecCCCeeEEe
Confidence 68999977789998642 4679999986 66666655432111 1123579999999999999999
Q ss_pred ECC-CCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEE-------------
Q 001380 675 DTE-NHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQI------------- 740 (1089)
Q Consensus 675 D~~-n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I------------- 740 (1089)
+.. .+.+..++..++.+.......... .......+..+++.+++..+++.......+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~ 194 (355)
T d2bbkh_ 124 QFSPAPAVGVVDLEGKAFKRMLDVPDCY---------HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDE 194 (355)
T ss_dssp ECSSSCEEEEEETTTTEEEEEEECCSEE---------EEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTS
T ss_pred cCCCCceeeeeecCCCcEeeEEecCCcc---------eEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceec
Confidence 864 467888898887654432211100 001112334455555555555554443333
Q ss_pred ------------------------EEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCC--
Q 001380 741 ------------------------WEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSES-- 794 (1089)
Q Consensus 741 ------------------------~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~-- 794 (1089)
+.++..++.+..+........ ........-..+..+++++++..+|++....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~ 272 (355)
T d2bbkh_ 195 FLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTE--AERADGWRPGGWQQVAYHRALDRIYLLVDQRDE 272 (355)
T ss_dssp CBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCH--HHHHTTEEECSSSCEEEETTTTEEEEEEEECCT
T ss_pred ceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCccc--ceEeeeeeccceEEEEEeCCCCeEEEEeccCCc
Confidence 333322222221110000000 0000000011234578888887887765332
Q ss_pred -------CeEEEEEcCCCCeEE-EecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc--EEEEeCCCCEEEEEe
Q 001380 795 -------SSIRALNLKTGGSRL-LAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ--IYVADSYNHKIKKLD 864 (1089)
Q Consensus 795 -------~~I~~~~~~~~~~~~-~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~--lyVaD~~n~~I~~~d 864 (1089)
+.|..++..++.... +.. -..|.++++++||+ +|++...++.|.++|
T Consensus 273 ~~~~~~~~~v~v~d~~t~~~~~~~~~-----------------------~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D 329 (355)
T d2bbkh_ 273 WRHKTASRFVVVLDAKTGERLAKFEM-----------------------GHEIDSINVSQDEKPLLYALSTGDKTLYIHD 329 (355)
T ss_dssp TCTTSCEEEEEEEETTTCCEEEEEEE-----------------------EEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred eeecCCCCeEEEEeCCCCcEEEEecC-----------------------CCCEEEEEEcCCCCeEEEEEECCCCEEEEEE
Confidence 367777777655431 111 12488999999996 788888899999999
Q ss_pred CCCCeE-EEEeccCCCCCCCCcccccccCCCceEEEccCC
Q 001380 865 PASNRV-STLAGIGKAGFKDGAALAAQLSEPAGIIEAQNG 903 (1089)
Q Consensus 865 ~~~~~v-~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G 903 (1089)
..++++ .++.+.|. .|..|.+..+|
T Consensus 330 ~~tg~~~~~i~~~G~--------------~p~~i~~~d~~ 355 (355)
T d2bbkh_ 330 AESGEELRSVNQLGH--------------GPQVITTADMG 355 (355)
T ss_dssp TTTCCEEEEECCCCS--------------SCCEEECCCCC
T ss_pred CCCCCEEEEEeCcCC--------------CccEEEeCCCC
Confidence 977764 55654332 37777765443
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.72 E-value=2.1e-06 Score=93.69 Aligned_cols=245 Identities=17% Similarity=0.178 Sum_probs=146.5
Q ss_pred CCCCceEEEeecCCeEEEEeC------------CCCEEEEEeCCCC---EEE-EEecCCCCCCCCCCCCccccCCcceeE
Q 001380 600 LKFPGKLAIDILNNRLFISDS------------NHNRIVVTDLDGN---FIV-QIGSSGEEGLRDGSFDDATFNRPQGLA 663 (1089)
Q Consensus 600 l~~P~~vavd~~~g~L~vsd~------------~~~~I~~~~~~g~---~~~-~i~~~g~~g~~dG~~~~~~f~~P~gla 663 (1089)
...|..|++++ +|.+|++-. ..++|+.+|.+.. ... .+.+. . . .....+|+||.
T Consensus 34 ~~G~EDi~~~~-dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~-~-------~-~~~~f~PhGi~ 103 (340)
T d1v04a_ 34 DNGSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGN-T-------L-DISSFNPHGIS 103 (340)
T ss_dssp CSCCCEEEECT-TSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECS-S-------S-CGGGCCEEEEE
T ss_pred CCCcceEEECC-CCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCC-C-------C-CCcceecccee
Confidence 34688999997 888887742 2478888886532 221 22221 1 0 11224699998
Q ss_pred Ee--eCCC-EEEEEEC--CCCEEEE--EECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC
Q 001380 664 YN--AKKN-LLYVADT--ENHALRE--IDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG 736 (1089)
Q Consensus 664 ~d--~~g~-~lyVaD~--~n~~I~~--~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~ 736 (1089)
+- .+|. .|||.+- .+.+|-. ++.++..++.+.. - ....+.+|.+|++..+| .+|+++..
T Consensus 104 l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~-v------------~~~~~~~pNDv~~~~~g-~fy~Tnd~ 169 (340)
T d1v04a_ 104 TFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKT-I------------RHKLLPSVNDIVAVGPE-HFYATNDH 169 (340)
T ss_dssp EEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEE-E------------CCTTCSSEEEEEEEETT-EEEEEESC
T ss_pred EEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEee-c------------CCccccCccceEEecCC-CEEEecCc
Confidence 84 3453 5888764 3455554 4444444433321 1 12346789999999887 89999632
Q ss_pred -----------------CcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEE
Q 001380 737 -----------------QHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRA 799 (1089)
Q Consensus 737 -----------------~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~ 799 (1089)
.+.++.+|. +.++... ..+..|+||++++|++.|||+++..++|++
T Consensus 170 ~~~~~~~~~~e~~~~~~~g~v~~~~~--~~~~~~~---------------~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~ 232 (340)
T d1v04a_ 170 YFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVA---------------EGFDFANGINISPDGKYVYIAELLAHKIHV 232 (340)
T ss_dssp SCCSHHHHHHHHHTTCCCEEEEEECS--SCEEEEE---------------EEESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred cCcChhhhhhhHhhcCCceeEEEEcC--CceEEEc---------------CCCCccceeEECCCCCEEEEEeCCCCeEEE
Confidence 235666654 3344333 346689999999999999999999999999
Q ss_pred EEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEcc-CCcEEEEeCCC--------------CEEEEE-
Q 001380 800 LNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAK-NGQIYVADSYN--------------HKIKKL- 863 (1089)
Q Consensus 800 ~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~-~G~lyVaD~~n--------------~~I~~~- 863 (1089)
++.++........ +- ..-..|..|.+|+ +|.+|++-... ..+.++
T Consensus 233 y~~~~~~~l~~~~-----------~~--------~l~~~pDNi~~d~~~g~lwva~~p~~~~~~~~~~~~~~~s~v~ri~ 293 (340)
T d1v04a_ 233 YEKHANWTLTPLR-----------VL--------SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ 293 (340)
T ss_dssp EEECTTSCEEEEE-----------EE--------ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred EEeCCCcccceEE-----------Ee--------cCCCCCCccEEecCCCEEEEEECCcccchhhhcccCCCCceeEEEE
Confidence 9887543221110 00 0112488999986 67999985321 134444
Q ss_pred --eCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEE
Q 001380 864 --DPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNII 915 (1089)
Q Consensus 864 --d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I 915 (1089)
+..++.+.++-.. +| ..+...+. ++--+|+||+....+..|
T Consensus 294 ~~~~~~~~v~~~~~~------~G----~~~~~~T~-a~~~~g~L~iGs~~~~~l 336 (340)
T d1v04a_ 294 DILSEEPKVTVVYAE------NG----TVLQGSTV-AAVYKGKLLIGTVFHKAL 336 (340)
T ss_dssp CTTSSSCEEEEEEEE------CS----SSSCSEEE-EEEETTEEEEEESSSCEE
T ss_pred eccCCCCeEEEEEeC------CC----cEeeceEE-EEEECCEEEEEeeeCCce
Confidence 3345555554321 11 02333333 333478999988766554
|
| >d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Windbeutel, N-terminal domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.71 E-value=2.4e-08 Score=92.29 Aligned_cols=93 Identities=13% Similarity=0.085 Sum_probs=69.3
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcC--CCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYK--DMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWR 529 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~--~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~ 529 (1089)
+.|++||.|||+||++|++ |.+.++++++. ...+.+.-|.+.+.+. +.+.++++
T Consensus 18 ~~~~~lV~Fya~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~~~~~----------------------~~n~~l~~ 73 (122)
T d2c0ga2 18 RFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYGE----------------------LENKALGD 73 (122)
T ss_dssp TSSEEEEEEEESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEECSSTT----------------------CTTHHHHH
T ss_pred cCCcEEEEEECCCCCcccC--HHHHHHHHHHHHhCCCeEEEecccccccc----------------------ccCHHHHH
Confidence 4589999999999999995 99999998875 2457777775532221 24578999
Q ss_pred HhCC--CceeEEEEECCCCcE--EEEecCCCchhhHHHHHHHH
Q 001380 530 ELGV--NSWPTFAVVGPNGKL--LAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 530 ~~~v--~~~Pt~~lid~~G~i--~~~~~G~~~~~~l~~~l~~~ 568 (1089)
.|+| .++||++++..++.. ...+.|..+.+.|.++|++-
T Consensus 74 ~~~i~~~~~PTi~~f~~g~~~~~~~~~~g~rt~~~l~~fv~~~ 116 (122)
T d2c0ga2 74 RYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSAN 116 (122)
T ss_dssp HTTCCTTSCCEEEEESSSSSSEEECCTTSCCCHHHHHHHHHHH
T ss_pred HhhcccCCCCcEEEEeCCcccccccccCCCCCHHHHHHHHHHh
Confidence 9988 579999999655443 23456778888888888754
|
| >d1nrwa_ c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Predicted hydrolases Cof domain: Hypothetical protein YwpJ species: Bacillus subtilis [TaxId: 1423]
Probab=98.69 E-value=4.6e-08 Score=104.80 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHh
Q 001380 223 PAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILT 296 (1089)
Q Consensus 223 P~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~ 296 (1089)
-|...++.+++++|++++++++|||+.||+.|.+.+| ..|..+...+++++ .|++++.+..+-.+.+.|+
T Consensus 213 ~K~~ai~~l~~~~gi~~~~vi~~GD~~ND~~Ml~~a~---~svam~na~~~~k~-~A~~v~~~~~~~Gv~~~l~ 282 (285)
T d1nrwa_ 213 SKGQALKRLAKQLNIPLEETAAVGDSLNDKSMLEAAG---KGVAMGNAREDIKS-IADAVTLTNDEHGVAHMMK 282 (285)
T ss_dssp SHHHHHHHHHHHTTCCGGGEEEEESSGGGHHHHHHSS---EEEECTTCCHHHHH-HCSEECCCGGGTHHHHHHH
T ss_pred hhhhHHHHHHhhcccCcccEEEEeCCHHHHHHHHhCC---eEEEeCCCCHHHHH-hCCEEcCCCCccHHHHHHH
Confidence 4677789999999999999999999999999999999 44444444566655 5789988776655555554
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.68 E-value=1.3e-07 Score=102.89 Aligned_cols=167 Identities=17% Similarity=0.145 Sum_probs=106.7
Q ss_pred eeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEE
Q 001380 661 GLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQI 740 (1089)
Q Consensus 661 gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I 740 (1089)
|+|++++|++++++. ..+.|..+|++++++........ -..|.+|+++|+|..+||+....+.|
T Consensus 1 g~a~~~~~~~l~~~~-~~~~v~v~D~~t~~~~~t~~~~~---------------~~~p~~l~~spDG~~l~v~~~~~~~v 64 (346)
T d1jmxb_ 1 GPALKAGHEYMIVTN-YPNNLHVVDVASDTVYKSCVMPD---------------KFGPGTAMMAPDNRTAYVLNNHYGDI 64 (346)
T ss_dssp CCCCCTTCEEEEEEE-TTTEEEEEETTTTEEEEEEECSS---------------CCSSCEEEECTTSSEEEEEETTTTEE
T ss_pred CccCCCCCcEEEEEc-CCCEEEEEECCCCCEEEEEEcCC---------------CCCcceEEECCCCCEEEEEECCCCcE
Confidence 678888888655555 56789999999988654322110 02689999999999999999999999
Q ss_pred EEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCC-----------CCeEEEEEcCCCCeEE
Q 001380 741 WEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSE-----------SSSIRALNLKTGGSRL 809 (1089)
Q Consensus 741 ~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~-----------~~~I~~~~~~~~~~~~ 809 (1089)
..||..++....-...+.. .......|.++++++||+++|+++.. ...+..++..++....
T Consensus 65 ~~~d~~t~~~~~~~~~~~~--------~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 136 (346)
T d1jmxb_ 65 YGIDLDTCKNTFHANLSSV--------PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK 136 (346)
T ss_dssp EEEETTTTEEEEEEESCCS--------TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC
T ss_pred EEEeCccCeeeeeeccccc--------ccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeee
Confidence 9999998876543211111 11234568999999999999998743 2344444443322100
Q ss_pred EecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEE
Q 001380 810 LAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTL 873 (1089)
Q Consensus 810 ~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~ 873 (1089)
. ...+.. -.....+....++.+|+++ ..+..++..++.....
T Consensus 137 ~-----------~~~~~~--------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 178 (346)
T d1jmxb_ 137 P-----------VRTFPM--------PRQVYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVA 178 (346)
T ss_dssp C-----------SEEEEC--------CSSCCCEEECTTSCEEEES---SSEEEECTTTCCEEEE
T ss_pred E-----------EEeeec--------cCceEEEEecCCCEEEEeC---CcceEEEccCCCEEEE
Confidence 0 000000 0122335556678888875 4577888776665443
|
| >d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: UAS domain domain: UBX domain-containing protein 7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=6.7e-08 Score=91.94 Aligned_cols=95 Identities=13% Similarity=0.183 Sum_probs=68.5
Q ss_pred cccCCCEEEEEEecCCCcchhhhh------hhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeec
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVL------PDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVND 522 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~------p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d 522 (1089)
+..++|++||+|+++||++|+.+. +.+.++.++ .++++.|..+ + +
T Consensus 38 Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~----~fV~~~v~~~------~-------------------~ 88 (147)
T d2dlxa1 38 GQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE----HFIFWQVYHD------S-------------------E 88 (147)
T ss_dssp HHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH----TEEEEEEESS------S-------------------H
T ss_pred HHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhh----heeEeeeccc------c-------------------h
Confidence 344689999999999999998764 344444333 5888888541 1 1
Q ss_pred CChhHHHHhCCCceeEEEEECC-CCcEEEEecCCCchhhHHHHHHHHHHHhc
Q 001380 523 GDMNLWRELGVNSWPTFAVVGP-NGKLLAQLAGEGHRKDLDDLVEAALLFYG 573 (1089)
Q Consensus 523 ~~~~l~~~~~v~~~Pt~~lid~-~G~i~~~~~G~~~~~~l~~~l~~~l~~~~ 573 (1089)
....+++.|+|.++|++++||| .|+++..+ |....+++...|++.+..+.
T Consensus 89 e~~~~~~~y~v~~~Pti~~idp~~ge~v~~~-~~~~~~~fl~~L~~fl~~~~ 139 (147)
T d2dlxa1 89 EGQRYIQFYKLGDFPYVSILDPRTGQKLVEW-HQLDVSSFLDQVTGFLGEHG 139 (147)
T ss_dssp HHHHHHHHHTCCSSSEEEEECTTTCCCCEEE-SSCCHHHHHHHHHHHHHHTC
T ss_pred hhhhhhhheecCceeEEEEEeCCCCeEeccc-CCCCHHHHHHHHHHHHhhCC
Confidence 1245788899999999999998 57777554 55677777777787777653
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.60 E-value=2.2e-07 Score=103.26 Aligned_cols=233 Identities=9% Similarity=-0.070 Sum_probs=125.8
Q ss_pred CCCCCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC
Q 001380 599 PLKFPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE 677 (1089)
Q Consensus 599 ~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~ 677 (1089)
....|.++++++++.+|||++...+.|.++|.. ++.+..+...+.. .+.+.++..+++...
T Consensus 122 ~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~------------------~~~~~~~~~~v~~~~ 183 (368)
T d1mdah_ 122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCF------------------HIHPGAAATHYLGSC 183 (368)
T ss_dssp BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCC------------------CCEEEETTEEECCCC
T ss_pred ccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcc------------------eEccCCCceEEEEcC
Confidence 456788999999888899999988999999987 5555555443211 111122224444444
Q ss_pred CCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCC
Q 001380 678 NHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDG 757 (1089)
Q Consensus 678 n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g 757 (1089)
++.+..++...+............ . ..-..+..+..++.+ .++... .++++.++..++.+..+....
T Consensus 184 Dg~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~g-~~~~~~--~~~v~~~~~~~~~~~~~~~~~ 250 (368)
T d1mdah_ 184 PASLAASDLAAAPAAAGIVGAQCT-G---------AQNCSSQAAQANYPG-MLVWAV--ASSILQGDIPAAGATMKAAID 250 (368)
T ss_dssp TTSCEEEECCSSCCCCEECCCCSC-T---------TSCBCSCCEEETTTT-EEEECB--SSCCEEEECCSSCCEEECCCC
T ss_pred CCCEEEEEecCCceeeeeeecccc-c---------ccccceeecccccCc-EEEEec--CCCEEEEeecCCceEEEeecc
Confidence 444444444332211111000000 0 000123334444443 222222 233444444444333332111
Q ss_pred ccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCC--------CeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCC
Q 001380 758 YERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSES--------SSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDG 829 (1089)
Q Consensus 758 ~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~--------~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg 829 (1089)
... .........-..+..++++++++.+|++..+. .+|+.++..++....... .
T Consensus 251 ~~~--~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-----------~----- 312 (368)
T d1mdah_ 251 GNE--SGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-----------N----- 312 (368)
T ss_dssp SSC--THHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-----------E-----
T ss_pred ccc--ceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec-----------C-----
Confidence 000 00000001112356789999999999986433 368888888765421110 0
Q ss_pred ccccccccCceEEEEccCCc--EEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEc
Q 001380 830 MGSEVLLQHPLGVYCAKNGQ--IYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEA 900 (1089)
Q Consensus 830 ~~~~~~l~~P~gva~~~~G~--lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd 900 (1089)
-..|.++++++||+ +|++....+.|.++|..++++......| ..|++|++-
T Consensus 313 ------~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g--------------~~P~~l~~~ 365 (368)
T d1mdah_ 313 ------GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD--------------KGPESLSVQ 365 (368)
T ss_dssp ------EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC--------------SCCCEEECC
T ss_pred ------CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECC--------------CCCCEEEEe
Confidence 12478899999995 8999999999999999888765443222 338888873
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.59 E-value=1.4e-05 Score=86.14 Aligned_cols=245 Identities=13% Similarity=0.088 Sum_probs=151.4
Q ss_pred CceEEEeecCCeEEEEeCCCCEEEEEeCCC-C--EEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC-C
Q 001380 603 PGKLAIDILNNRLFISDSNHNRIVVTDLDG-N--FIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE-N 678 (1089)
Q Consensus 603 P~~vavd~~~g~L~vsd~~~~~I~~~~~~g-~--~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~-n 678 (1089)
...++++| +|+++++-...+.|.+++... + ....+... . .....++++++++.+.++-.. .
T Consensus 61 v~~~~~sp-~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~-~-------------~~v~~v~~s~d~~~l~~~~~~~~ 125 (311)
T d1nr0a1 61 TTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVF-S-------------GPVKDISWDSESKRIAAVGEGRE 125 (311)
T ss_dssp EEEEEECT-TSSEEEEEETTSEEEEEESSSTTCCEEEEEECS-S-------------SCEEEEEECTTSCEEEEEECCSS
T ss_pred EEEEEEeC-CCCeEeccccCceEeeeeeeccccccccccccc-c-------------Ccccccccccccccccccccccc
Confidence 45678887 677777777788999998763 2 22233322 1 135789999999866665432 3
Q ss_pred CEEEEEECCCCeE-EEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCC
Q 001380 679 HALREIDFVNDTV-RTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDG 757 (1089)
Q Consensus 679 ~~I~~~d~~~g~v-~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g 757 (1089)
..++.++.+++.. .++.+ .-.....|+++|+++.++++....+.|..||..++.........
T Consensus 126 ~~~~v~~~~~~~~~~~l~~-----------------h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~ 188 (311)
T d1nr0a1 126 RFGHVFLFDTGTSNGNLTG-----------------QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEH 188 (311)
T ss_dssp CSEEEEETTTCCBCBCCCC-----------------CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCC
T ss_pred ccccccccccccccccccc-----------------cccccccccccccceeeecccccccccccccccccccccccccc
Confidence 4567777765432 12111 11245789999998877888777788999999887765543211
Q ss_pred ccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCcccccccc
Q 001380 758 YERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQ 837 (1089)
Q Consensus 758 ~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~ 837 (1089)
-.....++++|+++.++. -...+.|+.++..++......... .....|+. .
T Consensus 189 --------------~~~i~~v~~~p~~~~l~~-~~~d~~v~~~d~~~~~~~~~~~~~-----~~~~~~h~---------~ 239 (311)
T d1nr0a1 189 --------------TKFVHSVRYNPDGSLFAS-TGGDGTIVLYNGVDGTKTGVFEDD-----SLKNVAHS---------G 239 (311)
T ss_dssp --------------SSCEEEEEECTTSSEEEE-EETTSCEEEEETTTCCEEEECBCT-----TSSSCSSS---------S
T ss_pred --------------cccccccccCcccccccc-cccccccccccccccccccccccc-----cccccccc---------c
Confidence 123468999999855554 445688999998765543221110 01111211 1
Q ss_pred CceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEE-EEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEE
Q 001380 838 HPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVS-TLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIR 916 (1089)
Q Consensus 838 ~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~-t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~ 916 (1089)
.-.+++++++|+.+++-+..+.|+.+|..++.+. ++.. +.. ... ..+.+.++++.+++-..++.|+
T Consensus 240 ~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~-~~~----------~~~--~~~~~~~~~~~l~s~s~dG~i~ 306 (311)
T d1nr0a1 240 SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV-GTR----------IED--QQLGIIWTKQALVSISANGFIN 306 (311)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSS----------GGG--CEEEEEECSSCEEEEETTCCEE
T ss_pred cccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEEC-CCC----------ccc--eEEEEEecCCEEEEEECCCEEE
Confidence 2467899999988888778889999999888764 3432 111 011 1233444444334444678899
Q ss_pred EEeCC
Q 001380 917 YLDLN 921 (1089)
Q Consensus 917 ~~~~~ 921 (1089)
.++++
T Consensus 307 ~wd~d 311 (311)
T d1nr0a1 307 FVNPE 311 (311)
T ss_dssp EEETT
T ss_pred EEeCC
Confidence 88874
|
| >d2b82a1 c.108.1.12 (A:4-212) Class B acid phosphatase, AphA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Class B acid phosphatase, AphA domain: Class B acid phosphatase, AphA species: Escherichia coli [TaxId: 562]
Probab=98.58 E-value=1e-07 Score=94.48 Aligned_cols=95 Identities=19% Similarity=0.132 Sum_probs=70.8
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCC---hHhHHHHHH-HCCCCCCC-ccEEEEcCCccCCCCCHHHHHHHHHHcCCCC
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSAD---RIKVDANLA-AAGLPVSM-FDAIVSADAFENLKPAPDIFLSASKILNVPT 239 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~---~~~~~~~l~-~~gl~~~~-fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p 239 (1089)
.+.||+.+|++.++++|++|+.+||+. ++.+...|+ .+|+...- .+.++..++ ..|.. -+..++++++
T Consensus 86 ~p~pga~~fl~~~~~~Gv~IfyVTnR~~~~~e~T~~nL~K~lG~p~~~~~~vll~~~~--~~K~~---rr~~Ik~y~I-- 158 (209)
T d2b82a1 86 IPKEVARQLIDMHVRRGDAIFFVTGRSPTKTETVSKTLADNFHIPATNMNPVIFAGDK--PGQNT---KSQWLQDKNI-- 158 (209)
T ss_dssp EECHHHHHHHHHHHHHTCEEEEEECSCCCSSCCHHHHHHHHTTCCTTTBCCCEECCCC--TTCCC---SHHHHHHTTE--
T ss_pred CcchhHHHHHHHHHHcCCeEEEEeCCchhhHHHHHHHHHHHcCCCcccccceEeeCCC--CCchH---HHHHHHHcCe--
Confidence 578999999999999999999999964 345556665 48885222 234455443 22332 2334467887
Q ss_pred CcEEEEcCChhhHHHHHHcCCeEEEEcCC
Q 001380 240 SECIVIEDALAGVQAAKAAQMRCIAVTTT 268 (1089)
Q Consensus 240 ~~~v~VGD~~~Di~aA~~aG~~~i~V~~g 268 (1089)
++++||..+|+.+|+++|+++|-|.+.
T Consensus 159 --~l~~GD~l~Df~aA~eagi~~iRi~r~ 185 (209)
T d2b82a1 159 --RIFYGDSDNDITAARDVGARGIRILRA 185 (209)
T ss_dssp --EEEEESSHHHHHHHHHTTCEEEECCCC
T ss_pred --EEEecCCHHHHhHHHHcCCCceEeecc
Confidence 899999999999999999999999764
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=1.7e-05 Score=86.09 Aligned_cols=241 Identities=13% Similarity=0.066 Sum_probs=155.8
Q ss_pred CCceEEEeecCCeEEEEeCCCCEEEEEeCCC-C---EEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC
Q 001380 602 FPGKLAIDILNNRLFISDSNHNRIVVTDLDG-N---FIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE 677 (1089)
Q Consensus 602 ~P~~vavd~~~g~L~vsd~~~~~I~~~~~~g-~---~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~ 677 (1089)
....+++++ +|++.++-. .+.|.++|... . .+......+. -..-..++++|+|+.|+++. .
T Consensus 53 ~V~~v~fs~-~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h------------~~~I~~v~~s~dg~~l~s~~-~ 117 (337)
T d1gxra_ 53 VVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNR------------DNYIRSCKLLPDGCTLIVGG-E 117 (337)
T ss_dssp CCCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCT------------TSBEEEEEECTTSSEEEEEE-S
T ss_pred cEEEEEECC-CCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCC------------CCcEEEEEEcCCCCEEEEee-c
Confidence 346789997 666666654 67899998752 1 1222211111 11346899999999665554 5
Q ss_pred CCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCC
Q 001380 678 NHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDG 757 (1089)
Q Consensus 678 n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g 757 (1089)
++.|+.+|.............. .-.....+++++++..+ ++....+.|..++..++........
T Consensus 118 dg~i~iwd~~~~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~l-~s~~~d~~i~~~~~~~~~~~~~~~~- 181 (337)
T d1gxra_ 118 ASTLSIWDLAAPTPRIKAELTS--------------SAPACYALAISPDSKVC-FSCCSDGNIAVWDLHNQTLVRQFQG- 181 (337)
T ss_dssp SSEEEEEECCCC--EEEEEEEC--------------SSSCEEEEEECTTSSEE-EEEETTSCEEEEETTTTEEEEEECC-
T ss_pred cccccccccccccccccccccc--------------ccccccccccccccccc-ccccccccccccccccccccccccc-
Confidence 7889999986543222211000 01234678899988554 4445677899999888776544311
Q ss_pred ccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCcccccccc
Q 001380 758 YERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQ 837 (1089)
Q Consensus 758 ~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~ 837 (1089)
.......+++++++..++++. ..+.|+.++..++....... . -.
T Consensus 182 -------------~~~~v~~l~~s~~~~~~~~~~-~d~~v~i~d~~~~~~~~~~~-------------~---------~~ 225 (337)
T d1gxra_ 182 -------------HTDGASCIDISNDGTKLWTGG-LDNTVRSWDLREGRQLQQHD-------------F---------TS 225 (337)
T ss_dssp -------------CSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTTEEEEEEE-------------C---------SS
T ss_pred -------------ccccccccccccccccccccc-ccccccccccccceeecccc-------------c---------cc
Confidence 112346789999986666554 56889999987654322111 0 12
Q ss_pred CceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEE
Q 001380 838 HPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRY 917 (1089)
Q Consensus 838 ~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~ 917 (1089)
....++++++++..++-..++.|+.+|..++........ -....++++.++|+.+++-..++.|+.
T Consensus 226 ~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--------------~~~i~~v~~s~~g~~l~s~s~Dg~i~i 291 (337)
T d1gxra_ 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLH--------------ESCVLSLKFAYCGKWFVSTGKDNLLNA 291 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCC--------------SSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ceEEEEEcccccccceecccccccccccccccccccccc--------------ccccceEEECCCCCEEEEEeCCCeEEE
Confidence 356789999998777777788999999887776554321 123568889999988888778899999
Q ss_pred EeCCCC
Q 001380 918 LDLNKE 923 (1089)
Q Consensus 918 ~~~~~~ 923 (1089)
++....
T Consensus 292 wd~~~~ 297 (337)
T d1gxra_ 292 WRTPYG 297 (337)
T ss_dssp EETTTC
T ss_pred EECCCC
Confidence 998876
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.57 E-value=6e-06 Score=89.74 Aligned_cols=137 Identities=12% Similarity=0.147 Sum_probs=96.3
Q ss_pred EEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC-CCCEEEEEE
Q 001380 607 AIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT-ENHALREID 685 (1089)
Q Consensus 607 avd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~-~n~~I~~~d 685 (1089)
-++|.+|+++.+.. .++|++++.++..+..++.. .....++++|+|+.|+++.. ..+.|+.+|
T Consensus 9 ~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~~~~---------------~~v~~~~~spDg~~l~~~~~~~g~~v~v~d 72 (360)
T d1k32a3 9 DFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEP---------------LRIRYVRRGGDTKVAFIHGTREGDFLGIYD 72 (360)
T ss_dssp EEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCC---------------SCEEEEEECSSSEEEEEEEETTEEEEEEEE
T ss_pred cccCCCCCEEEEEE-CCeEEEEECCCCcEEEccCC---------------CCEEEEEECCCCCEEEEEEcCCCCEEEEEE
Confidence 36775666665554 46899999987766666432 25689999999988876643 345789999
Q ss_pred CCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCCCC
Q 001380 686 FVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLNGS 765 (1089)
Q Consensus 686 ~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~ 765 (1089)
..++.+..+.+.. ...+.++++|+|..|+.+ ...+.++.++..++........
T Consensus 73 ~~~~~~~~~~~~~-----------------~~v~~~~~spdg~~l~~~-~~~~~~~~~~~~~~~~~~~~~~--------- 125 (360)
T d1k32a3 73 YRTGKAEKFEENL-----------------GNVFAMGVDRNGKFAVVA-NDRFEIMTVDLETGKPTVIERS--------- 125 (360)
T ss_dssp TTTCCEEECCCCC-----------------CSEEEEEECTTSSEEEEE-ETTSEEEEEETTTCCEEEEEEC---------
T ss_pred CCCCcEEEeeCCC-----------------ceEEeeeeccccccccee-ccccccccccccccceeeeeec---------
Confidence 9999888775321 256899999999666655 4567899999988876655421
Q ss_pred CCCCccccCCceEEEcCCCCEEEEEe
Q 001380 766 SSLNTSFAQPSGISLSPDFMEIYVAD 791 (1089)
Q Consensus 766 ~~~~~~~~~P~glav~~~g~~lyvad 791 (1089)
.......++++++|+.|.++.
T Consensus 126 -----~~~~~~~~~~spdg~~la~~~ 146 (360)
T d1k32a3 126 -----REAMITDFTISDNSRFIAYGF 146 (360)
T ss_dssp -----SSSCCCCEEECTTSCEEEEEE
T ss_pred -----ccccccchhhccceeeeeeec
Confidence 112345788999987776543
|
| >d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Predicted hydrolases Cof domain: Sugar phosphatase SupH (YbiV) species: Escherichia coli [TaxId: 562]
Probab=98.55 E-value=7.3e-08 Score=102.30 Aligned_cols=71 Identities=10% Similarity=0.091 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHh
Q 001380 222 KPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILT 296 (1089)
Q Consensus 222 KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~ 296 (1089)
--|...++.+++++|++++++++|||+.||+.|.+.+| ..|..+...+++++ .+++|+.+..+-.+.+.|+
T Consensus 189 ~sK~~al~~l~~~lgi~~~~vi~~GD~~ND~~Ml~~ag---~~vam~Na~~~lk~-~A~~v~~~~~~~Gva~~i~ 259 (269)
T d1rlma_ 189 LHKANGISRLLKRWDLSPQNVVAIGDSGNDAEMLKMAR---YSFAMGNAAENIKQ-IARYATDDNNHEGALNVIQ 259 (269)
T ss_dssp CSHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHCS---EEEECTTCCHHHHH-HCSEECCCGGGTHHHHHHH
T ss_pred hHHHHHHHHHhhhhccccccEEEEcCCcchHHHHHhCC---eEEEeCCCCHHHHH-hCCEEcCCCCccHHHHHHH
Confidence 34778899999999999999999999999999999999 45555555666665 5789998877655555544
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.53 E-value=1.5e-05 Score=86.58 Aligned_cols=262 Identities=10% Similarity=0.090 Sum_probs=155.9
Q ss_pred EEEEeCCCCEEEEEe-CCCCEEEEEecCCC---CCCC-----------------------CCC--CCccccCCcceeEEe
Q 001380 615 LFISDSNHNRIVVTD-LDGNFIVQIGSSGE---EGLR-----------------------DGS--FDDATFNRPQGLAYN 665 (1089)
Q Consensus 615 L~vsd~~~~~I~~~~-~~g~~~~~i~~~g~---~g~~-----------------------dG~--~~~~~f~~P~gla~d 665 (1089)
.|+|...+++|.++- +.++.+.+|+-... .|+. +|. +..+-..+| .+.+.
T Consensus 15 ~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP-~~S~T 93 (459)
T d1fwxa2 15 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHV-HMSFT 93 (459)
T ss_dssp EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCE-EEEEE
T ss_pred EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCC-ccccc
Confidence 344444567777774 57888887765421 1221 110 122345566 44443
Q ss_pred ---eCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCc----
Q 001380 666 ---AKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQH---- 738 (1089)
Q Consensus 666 ---~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~---- 738 (1089)
+||++|||.|..|.||.+||+++-++..+..... ...++|+...+.++..||...+..
T Consensus 94 dGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn---------------~~~~HG~r~~~~p~T~YV~~~~e~~vP~ 158 (459)
T d1fwxa2 94 EGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPN---------------AKGIHGLRPQKWPRSNYVFCNGEDETPL 158 (459)
T ss_dssp TTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSS---------------CCSEEEEEECCSSBCSEEEEEECSCEES
T ss_pred CCccceeEEEEEcCCCceEEEEECcceeeeEEEecCC---------------CCCCceeecccCCCeEEEEccCcccccc
Confidence 3789999999999999999999988766553211 137899998877788888765443
Q ss_pred ---------------EEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCC--------
Q 001380 739 ---------------QIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESS-------- 795 (1089)
Q Consensus 739 ---------------~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~-------- 795 (1089)
.+..+|.++..+..-.-- -..|.+++++++|+++|++..++.
T Consensus 159 pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V---------------~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ 223 (459)
T d1fwxa2 159 VNDGTNMEDVANYVNVFTAVDADKWEVAWQVLV---------------SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEM 223 (459)
T ss_dssp SCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEE---------------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHH
T ss_pred CCCCccccchhhcceEEEEEecCCceEEEEeee---------------CCChhccccCCCCCEEEEEeccccCCcchhhc
Confidence 346777777665432210 015789999999999999875432
Q ss_pred ------eEEEEEcC--------C-----CCeEEEecCCCCCCCCccccCCCCCccc---cccccCceEEEEccCC-cEEE
Q 001380 796 ------SIRALNLK--------T-----GGSRLLAGGDPIFPDNLFKFGDRDGMGS---EVLLQHPLGVYCAKNG-QIYV 852 (1089)
Q Consensus 796 ------~I~~~~~~--------~-----~~~~~~~g~~~~~~~~l~~~g~~dg~~~---~~~l~~P~gva~~~~G-~lyV 852 (1089)
.+..++.. + +.+.++-+... .+... -.-=..|.||.++||| .+||
T Consensus 224 ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~------------~~~~v~~yIPVpKsPHGV~vSPDGKyi~V 291 (459)
T d1fwxa2 224 TAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKE------------ASSLFTRYIPIANNPHGCNMAPDKKHLCV 291 (459)
T ss_dssp TCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--------------CSSEEEEEEESSCCCEEECTTSSEEEE
T ss_pred ccccceEEEEechHHhHHhhhcCCcEEeCCceeeccccc------------CCcceeEEEecCCCCCceEECCCCCEEEE
Confidence 12222211 0 11222211100 00000 0001579999999999 5999
Q ss_pred EeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCccccccc-CCCceEEEccCCcEEEEECCCCEEEEEeCCC
Q 001380 853 ADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQL-SEPAGIIEAQNGNLFIADTNNNIIRYLDLNK 922 (1089)
Q Consensus 853 aD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l-~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~ 922 (1089)
+.-....+.++|-+. .-..+.+.... .+....+..+ -.|.--++|..|+.|.+-.-..+|.++++..
T Consensus 292 aGKLs~tVSViD~~K-i~~~~~~~~~~--~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~ 359 (459)
T d1fwxa2 292 AGKLSPTVTVLDVTR-FDAVFYENADP--RSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 359 (459)
T ss_dssp ECTTSSBEEEEEGGG-HHHHHHSCC-G--GGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred eCCcCCcEEEEEehh-hhhhhcccCCc--cccEEeecccCcCccccccCCCceEEEEeeccceEEEEecch
Confidence 998899999998531 10001000000 0000000011 2377889999999999999999999999854
|
| >d1k1ea_ c.108.1.5 (A:) Probable phosphatase YrbI {Haemophilus influenzae, HI1679 [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Probable phosphatase YrbI domain: Probable phosphatase YrbI species: Haemophilus influenzae, HI1679 [TaxId: 727]
Probab=98.51 E-value=6.9e-08 Score=94.91 Aligned_cols=102 Identities=16% Similarity=0.106 Sum_probs=81.0
Q ss_pred HHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEEEcCChhhH
Q 001380 173 LINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIVIEDALAGV 252 (1089)
Q Consensus 173 lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di 252 (1089)
.+..|++.|+.++++|+.....+....+.+++. .++. ..+++...++..++++++++++|+||||..+|+
T Consensus 40 gi~~l~~~gi~~~iis~~~~~~v~~~~~~l~~~-----~~~~-----~~~~K~~~l~~~~~~~~i~~~~v~~vGDd~nDl 109 (177)
T d1k1ea_ 40 GIKMLMDADIQVAVLSGRDSPILRRRIADLGIK-----LFFL-----GKLEKETACFDLMKQAGVTAEQTAYIGDDSVDL 109 (177)
T ss_dssp HHHHHHHTTCEEEEEESCCCHHHHHHHHHHTCC-----EEEE-----SCSCHHHHHHHHHHHHTCCGGGEEEEECSGGGH
T ss_pred HHHHHhhhcEEEEEecCCchhHHHHHHhhhccc-----cccc-----ccccHHHHHHHHHHHhcCCcceeEEecCCccHH
Confidence 366788999999999999889999999998885 2222 246677889999999999999999999999999
Q ss_pred HHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCccc
Q 001380 253 QAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGS 288 (1089)
Q Consensus 253 ~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~e 288 (1089)
.+.+.+|+ .+..+...++.++ .+++|...-..
T Consensus 110 ~~l~~~g~---siap~nA~~~vk~-~A~~Vt~~~GG 141 (177)
T d1k1ea_ 110 PAFAACGT---SFAVADAPIYVKN-AVDHVLSTHGG 141 (177)
T ss_dssp HHHHHSSE---EEECTTSCHHHHT-TSSEECSSCTT
T ss_pred HHHhhCCe---EEEcCCccHHHHH-hCCEEeCCCCC
Confidence 99999994 4444444445444 68888877443
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.51 E-value=3.6e-06 Score=89.47 Aligned_cols=240 Identities=15% Similarity=0.095 Sum_probs=148.6
Q ss_pred ceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEE
Q 001380 604 GKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALR 682 (1089)
Q Consensus 604 ~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~ 682 (1089)
..|+++| +++++++-...+.|.++|.. |+.+..+.... -.....+++.++|. ++++.. ++.|+
T Consensus 16 ~~l~~s~-dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h-------------~~~v~~v~~~~~g~-~~~~~~-d~~v~ 79 (299)
T d1nr0a2 16 TALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVH-------------ATMITGIKTTSKGD-LFTVSW-DDHLK 79 (299)
T ss_dssp EEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSSCSC-------------SSCEEEEEECTTSC-EEEEET-TTEEE
T ss_pred EEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCC-------------CCcEEEEEeeccce-eecccc-eeeEE
Confidence 3688887 67777776677899999976 66665443221 12347899999988 666553 56788
Q ss_pred EEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccC
Q 001380 683 EIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNL 762 (1089)
Q Consensus 683 ~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~ 762 (1089)
.++..+....... ......-..+..+++++++..+.++.. +.+..++. +.......
T Consensus 80 ~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~s~~g~~~~~~~~--~~i~~~~~--~~~~~~~~------- 135 (299)
T d1nr0a2 80 VVPAGGSGVDSSK-------------AVANKLSSQPLGLAVSADGDIAVAACY--KHIAIYSH--GKLTEVPI------- 135 (299)
T ss_dssp EECSSSSSSCTTS-------------CCEEECSSCEEEEEECTTSSCEEEEES--SEEEEEET--TEEEEEEC-------
T ss_pred EeccCCccccccc-------------ccccccccccccccccccccccccccc--cccccccc--cccccccc-------
Confidence 8876432211100 000111236788999998865555443 45666663 22222221
Q ss_pred CCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEE
Q 001380 763 NGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGV 842 (1089)
Q Consensus 763 ~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gv 842 (1089)
-.....++++++++.+++ -...+.|+.++..++....+.. .++ -.....+
T Consensus 136 ---------~~~~~~~~~s~~~~~l~~-g~~dg~i~~~d~~~~~~~~~~~-----------~~~---------~~~i~~~ 185 (299)
T d1nr0a2 136 ---------SYNSSCVALSNDKQFVAV-GGQDSKVHVYKLSGASVSEVKT-----------IVH---------PAEITSV 185 (299)
T ss_dssp ---------SSCEEEEEECTTSCEEEE-EETTSEEEEEEEETTEEEEEEE-----------EEC---------SSCEEEE
T ss_pred ---------cccccccccccccccccc-cccccccccccccccccccccc-----------ccc---------ccccccc
Confidence 113467899999855544 4567899999987665432211 000 1235788
Q ss_pred EEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCC
Q 001380 843 YCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNK 922 (1089)
Q Consensus 843 a~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~ 922 (1089)
+++++|+.+++-..++.|+.+|..++........- ...-....++++.++|+++++-..++.|+.+++..
T Consensus 186 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~----------~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~ 255 (299)
T d1nr0a2 186 AFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSW----------TFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK 255 (299)
T ss_dssp EECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCC----------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred ccccccccccccccccccccccccccccccccccc----------cccccccccccccccccceEEEcCCCEEEEEECCC
Confidence 99999987777778889999997655432211110 00123356788999998888777788999999876
Q ss_pred C
Q 001380 923 E 923 (1089)
Q Consensus 923 ~ 923 (1089)
.
T Consensus 256 ~ 256 (299)
T d1nr0a2 256 P 256 (299)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >d1nf2a_ c.108.1.10 (A:) Hypothetical protein TM0651 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Predicted hydrolases Cof domain: Hypothetical protein TM0651 species: Thermotoga maritima [TaxId: 2336]
Probab=98.41 E-value=1.2e-07 Score=100.68 Aligned_cols=74 Identities=14% Similarity=0.092 Sum_probs=60.0
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhcc
Q 001380 221 LKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTGG 298 (1089)
Q Consensus 221 ~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~~ 298 (1089)
+--|...++.+++++|++++++++|||+.||+.|.+.+|. .|..+...+++++ .|++++.+..+-.+..+++.+
T Consensus 188 ~~~K~~ai~~l~~~~~i~~~~vva~GD~~ND~~ml~~~~~---sva~~na~~~~k~-~A~~i~~~~~~~Gva~~i~~l 261 (267)
T d1nf2a_ 188 NVDKGKALRFLRERMNWKKEEIVVFGDNENDLFMFEEAGL---RVAMENAIEKVKE-ASDIVTLTNNDSGVSYVLERI 261 (267)
T ss_dssp TCCHHHHHHHHHHHHTCCGGGEEEEECSHHHHHHHTTCSE---EEECTTSCHHHHH-HCSEECCCTTTTHHHHHHTTB
T ss_pred CCchhHHHHHHHHhhccCcccEEEEcCCcchHHHHHhCCc---EEEeCCCCHHHHH-hCCEEcCCCCccHHHHHHHHH
Confidence 4567888999999999999999999999999999999994 4555555566655 689999988887667777654
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.40 E-value=6.6e-05 Score=80.16 Aligned_cols=252 Identities=15% Similarity=0.173 Sum_probs=148.9
Q ss_pred CCceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCE
Q 001380 602 FPGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHA 680 (1089)
Q Consensus 602 ~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~ 680 (1089)
.-..|++++ ++.++++-...+.|.++|.. ++.+..+... . .....++++|+|+.++.+. .++.
T Consensus 57 ~I~~l~~s~-~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~-~-------------~~v~~v~~~~~~~~l~~~~-~d~~ 120 (340)
T d1tbga_ 57 KIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLR-S-------------SWVMTCAYAPSGNYVACGG-LDNI 120 (340)
T ss_dssp CEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEEECS-C-------------SCEEEEEECTTSSEEEEEE-TTCC
T ss_pred CEEEEEECC-CCCEEEEEECCCceeeeecccceeEEEEecc-c-------------ccEEeeEeeccceeeeeec-ccce
Confidence 345788887 67777777778999999986 6666666543 1 1357899999998665554 4556
Q ss_pred EEEEECCCC-----eEEEEecCCCCCC------------CCCC---------CC--cccccccC-CceeEEEecCCCEEE
Q 001380 681 LREIDFVND-----TVRTLAGNGTKGS------------DYQG---------GE--KGTSQLLN-SPWDVCYKPINEKVY 731 (1089)
Q Consensus 681 I~~~d~~~g-----~v~~~ag~g~~~~------------~~~~---------~~--~~~~~~l~-~P~~la~~~~g~~ly 731 (1089)
++.++.... ....+.+...... .... .. ........ ........+.+ .++
T Consensus 121 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 199 (340)
T d1tbga_ 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLF 199 (340)
T ss_dssp EEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTS-SEE
T ss_pred eecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeecccccc-cee
Confidence 666664321 1222221110000 0000 00 00000001 11223344444 566
Q ss_pred EEECCCcEEEEEECCCCeEEE-EeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEE
Q 001380 732 IAMAGQHQIWEHSTVDGVTRA-FSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLL 810 (1089)
Q Consensus 732 vad~~~~~I~~~~~~~g~~~~-~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~ 810 (1089)
++....+.|..||..++.... +.+. -.....|+++|+++. +++-+..+.|+.++.........
T Consensus 200 ~~~~~d~~v~i~d~~~~~~~~~~~~h---------------~~~i~~v~~~p~~~~-l~s~s~d~~i~~~~~~~~~~~~~ 263 (340)
T d1tbga_ 200 VSGACDASAKLWDVREGMCRQTFTGH---------------ESDINAICFFPNGNA-FATGSDDATCRLFDLRADQELMT 263 (340)
T ss_dssp EEEETTTEEEEEETTTTEEEEEECCC---------------SSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEEE
T ss_pred EEeecCceEEEEECCCCcEEEEEeCC---------------CCCeEEEEECCCCCE-EEEEeCCCeEEEEeecccccccc
Confidence 666667888888887776543 3321 113468999999854 45555678999999875543322
Q ss_pred ecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCe-EEEEeccCCCCCCCCccccc
Q 001380 811 AGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNR-VSTLAGIGKAGFKDGAALAA 889 (1089)
Q Consensus 811 ~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~-v~t~~g~g~~g~~~g~~~~~ 889 (1089)
.... . .......++++++|+++++-+.++.|+.+|..++. +.++.+.
T Consensus 264 ~~~~-----------~--------~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H------------- 311 (340)
T d1tbga_ 264 YSHD-----------N--------IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH------------- 311 (340)
T ss_dssp ECCT-----------T--------CCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCC-------------
T ss_pred cccc-----------c--------ccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCC-------------
Confidence 1110 0 01124678999999988888888999999986554 4444331
Q ss_pred ccCCCceEEEccCCcEEEEECCCCEEEEEe
Q 001380 890 QLSEPAGIIEAQNGNLFIADTNNNIIRYLD 919 (1089)
Q Consensus 890 ~l~~P~gi~vd~~G~lyVad~~n~~I~~~~ 919 (1089)
-....+|++.++|+++++-..++.|++.+
T Consensus 312 -~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 312 -DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp -SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred -CCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 22356889999888777766778887764
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=98.39 E-value=9.1e-06 Score=92.31 Aligned_cols=167 Identities=18% Similarity=0.317 Sum_probs=103.4
Q ss_pred cCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecC---CCEEEE
Q 001380 656 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPI---NEKVYI 732 (1089)
Q Consensus 656 f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~---g~~lyv 732 (1089)
+.+|.+|++.|+|+ |||++...++|++++.+++..+.+.+.........+ -....|||++|+ ++.||+
T Consensus 26 L~~P~~la~~pdg~-llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~g--------e~GLLgia~~Pdf~~n~~iYv 96 (450)
T d1crua_ 26 LNKPHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTVFQVPEIVNDADG--------QNGLLGFAFHPDFKNNPYIYI 96 (450)
T ss_dssp CSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTS--------SCSEEEEEECTTTTTSCEEEE
T ss_pred CCCceEEEEeCCCe-EEEEEecCCEEEEEECCCCcEeecccCCccccccCC--------CCceeeEEeCCCCccCCEEEE
Confidence 67999999999998 999998889999999999988888754321111000 114568999985 469999
Q ss_pred EECC------------CcEEEEEECCCC--eEE----EEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCC-
Q 001380 733 AMAG------------QHQIWEHSTVDG--VTR----AFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSE- 793 (1089)
Q Consensus 733 ad~~------------~~~I~~~~~~~g--~~~----~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~- 793 (1089)
+-.. ...|+++..... ... .+.+.. ...-..-..|++++|| .|||+-..
T Consensus 97 syt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p-----------~~~~H~gg~l~fgpDG-~LYvs~Gd~ 164 (450)
T d1crua_ 97 SGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP-----------SSKDHQSGRLVIGPDQ-KIYYTIGDQ 164 (450)
T ss_dssp EEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC-----------CCSSCCEEEEEECTTS-CEEEEECCT
T ss_pred EEecCCCCCcccccccceEEEeeecccccccccceEEEeeccc-----------ccccccccceeEcCCC-CEEEEecCC
Confidence 6421 112333332221 111 111100 0111234689999998 89997532
Q ss_pred -------------------------------CCeEEEEEcCCCCeEEEecCCCCC---CCCccccCCCCCccccccccCc
Q 001380 794 -------------------------------SSSIRALNLKTGGSRLLAGGDPIF---PDNLFKFGDRDGMGSEVLLQHP 839 (1089)
Q Consensus 794 -------------------------------~~~I~~~~~~~~~~~~~~g~~~~~---~~~l~~~g~~dg~~~~~~l~~P 839 (1089)
.++|.++++++... ...|.. ...+++.| +.+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~----~dnP~~~~~~~ei~a~G----------~RNp 230 (450)
T d1crua_ 165 GRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIP----KDNPSFNGVVSHIYTLG----------HRNP 230 (450)
T ss_dssp TTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCC----TTCCEETTEECSEEEBC----------CSEE
T ss_pred CcccccccccccccccCcccccccccccccccCceEEeecccccc----ccccccccccceEEEec----------cccc
Confidence 26788887764311 011100 01234555 4589
Q ss_pred eEEEEccCCcEEEEeCCC
Q 001380 840 LGVYCAKNGQIYVADSYN 857 (1089)
Q Consensus 840 ~gva~~~~G~lyVaD~~n 857 (1089)
.+++++++|+||++|.+.
T Consensus 231 ~g~~~~p~g~l~~~e~G~ 248 (450)
T d1crua_ 231 QGLAFTPNGKLLQSEQGP 248 (450)
T ss_dssp EEEEECTTSCEEEEEECS
T ss_pred cceeecccceeeeccccc
Confidence 999999999999999763
|
| >d2rbka1 c.108.1.10 (A:2-261) Sugar-phosphate phosphatase BT4131 {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Predicted hydrolases Cof domain: Sugar-phosphate phosphatase BT4131 species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.38 E-value=1.4e-07 Score=99.58 Aligned_cols=71 Identities=10% Similarity=0.158 Sum_probs=54.9
Q ss_pred CCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHh
Q 001380 222 KPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILT 296 (1089)
Q Consensus 222 KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~ 296 (1089)
-.|...++.+++++|++++++++|||+.||+.|.+.+|. ++.| +...+++++ .+++|..+..+=.+...|+
T Consensus 185 ~sK~~al~~l~~~~~i~~~~~~a~GD~~ND~~Ml~~a~~-svav--~na~~~lk~-~A~~vt~~~~~~Gv~~~l~ 255 (260)
T d2rbka1 185 DTKQKGIDEIIRHFGIKLEETMSFGDGGNDISMLRHAAI-GVAM--GQAKEDVKA-AADYVTAPIDEDGISKAMK 255 (260)
T ss_dssp CSHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSSE-EEEC--TTSCHHHHH-HSSEECCCGGGTHHHHHHH
T ss_pred CCHHHHHHHHHHhccccHhheeEecCCcccHHHHHhCCe-EEEe--CCCCHHHHH-hCCEEeCCCCccHHHHHHH
Confidence 356677899999999999999999999999999999995 3444 444555555 5688888876655555554
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.37 E-value=7.4e-05 Score=82.16 Aligned_cols=257 Identities=12% Similarity=0.057 Sum_probs=145.5
Q ss_pred ceEEEeecCCeEEEEeCCCCEEEEEeCCCCEE---EEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCE
Q 001380 604 GKLAIDILNNRLFISDSNHNRIVVTDLDGNFI---VQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHA 680 (1089)
Q Consensus 604 ~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~---~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~ 680 (1089)
..+++++ +|+++++-..++.|.+++.++... ..+.+. . .....|+++|++++|..+. .++.
T Consensus 11 t~~~~s~-dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH-~-------------~~V~~l~fsp~~~~l~s~s-~D~~ 74 (371)
T d1k8kc_ 11 SCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEH-N-------------GQVTGVDWAPDSNRIVTCG-TDRN 74 (371)
T ss_dssp CEEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEEEECC-S-------------SCEEEEEEETTTTEEEEEE-TTSC
T ss_pred EEEEECC-CCCEEEEEeCCCEEEEEECCCCCEEEEEEecCC-C-------------CCEEEEEECCCCCEEEEEE-CCCe
Confidence 4688987 677776667788999999875432 233221 1 1347899999999665554 4678
Q ss_pred EEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCc--EEEEEECCCCeEEEEeCCCc
Q 001380 681 LREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQH--QIWEHSTVDGVTRAFSGDGY 758 (1089)
Q Consensus 681 I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~--~I~~~~~~~g~~~~~~g~g~ 758 (1089)
|+.+|+.++.......... .-.....++++|+++.++++.. .+ ++|.++..........-..
T Consensus 75 i~vWd~~~~~~~~~~~~~~--------------~~~~v~~i~~~p~~~~l~~~s~-d~~i~i~~~~~~~~~~~~~~~~~- 138 (371)
T d1k8kc_ 75 AYVWTLKGRTWKPTLVILR--------------INRAARCVRWAPNEKKFAVGSG-SRVISICYFEQENDWWVCKHIKK- 138 (371)
T ss_dssp EEEEEEETTEEEEEEECCC--------------CSSCEEEEEECTTSSEEEEEET-TSSEEEEEEETTTTEEEEEEECT-
T ss_pred EEEEeeccccccccccccc--------------ccccccccccccccccceeecc-cCcceeeeeeccccccccccccc-
Confidence 9999987766543321110 0125678999999977766653 34 4555554433222111000
Q ss_pred cccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccC
Q 001380 759 ERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQH 838 (1089)
Q Consensus 759 ~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~ 838 (1089)
..-.....++++|++ .++++-+..+.|+.++............... .....++..- ......-..
T Consensus 139 -----------~~~~~v~~v~~~p~~-~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~ 203 (371)
T d1k8kc_ 139 -----------PIRSTVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPW--GSKMPFGELM-FESSSSCGW 203 (371)
T ss_dssp -----------TCCSCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTT--BSCCCTTCEE-EECCCCSSC
T ss_pred -----------ccccccccccccccc-cceeccccCcEEEEEeeccCccccccccccc--cccccceeee-eeccCccCc
Confidence 001234678999998 4556666778899998764332111000000 0000000000 000001123
Q ss_pred ceEEEEccCCcEEEEeCCCCEEEEEeCCCCe-EEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCC-CEEE
Q 001380 839 PLGVYCAKNGQIYVADSYNHKIKKLDPASNR-VSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNN-NIIR 916 (1089)
Q Consensus 839 P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~-v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n-~~I~ 916 (1089)
..+++++++|+.+++-+.++.|+.+|..++. +.++.+. -..-..+++.++|.++++.... -++.
T Consensus 204 v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--------------~~~v~s~~fs~d~~~la~g~d~~~~~~ 269 (371)
T d1k8kc_ 204 VHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE--------------TLPLLAVTFITESSLVAAGHDCFPVLF 269 (371)
T ss_dssp EEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS--------------SCCEEEEEEEETTEEEEEETTSSCEEE
T ss_pred EEEEEeecccccccccccCCcceEEeeecccceeeeecc--------------cccceeeeecCCCCEEEEEcCCceEEE
Confidence 4688999999877777788999999986554 3444321 1123578888888877765432 2344
Q ss_pred EEeCC
Q 001380 917 YLDLN 921 (1089)
Q Consensus 917 ~~~~~ 921 (1089)
.++..
T Consensus 270 ~~~~~ 274 (371)
T d1k8kc_ 270 TYDSA 274 (371)
T ss_dssp EEETT
T ss_pred EeeCC
Confidence 44443
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.32 E-value=0.00018 Score=78.73 Aligned_cols=277 Identities=13% Similarity=0.146 Sum_probs=156.4
Q ss_pred CceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCC-----CCCccccCCcceeEEeeCCCEEEEEEC
Q 001380 603 PGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDG-----SFDDATFNRPQGLAYNAKKNLLYVADT 676 (1089)
Q Consensus 603 P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG-----~~~~~~f~~P~gla~d~~g~~lyVaD~ 676 (1089)
-..|++++ +|+++++-. .+.|.+++.. |+.+..+..... ...+. ......-..-..|+++++|+.|+.+.
T Consensus 65 V~~l~fs~-dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~- 140 (388)
T d1erja_ 65 VCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSA-ANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA- 140 (388)
T ss_dssp CCEEEECT-TSSEEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSEEEEEE-
T ss_pred EEEEEECC-CCCEEEEEe-CCeEEEEEecccceEeeeccccc-ccccccccccccccCCCCCEEEEEECCCCCcceecc-
Confidence 34688887 677766654 6789999875 777766654311 11000 00001112246789999999555554
Q ss_pred CCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCC
Q 001380 677 ENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGD 756 (1089)
Q Consensus 677 ~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~ 756 (1089)
.++.|+.++...+......... -...+.+++++.+..++.+. ..+.|..+|..+.........
T Consensus 141 ~dg~v~i~~~~~~~~~~~~~~h----------------~~~v~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~ 203 (388)
T d1erja_ 141 EDRLIRIWDIENRKIVMILQGH----------------EQDIYSLDYFPSGDKLVSGS-GDRTVRIWDLRTGQCSLTLSI 203 (388)
T ss_dssp TTSCEEEEETTTTEEEEEECCC----------------SSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTTEEEEEEEC
T ss_pred cccccccccccccccccccccc----------------cccccccccccccccccccc-cceeeeeeecccccccccccc
Confidence 5778999998877655443211 12457788888886665554 567888899887765544321
Q ss_pred CccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccc
Q 001380 757 GYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLL 836 (1089)
Q Consensus 757 g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l 836 (1089)
. .....+++.+..+.++++-+..+.|+.++..++......... .....++ -
T Consensus 204 ~---------------~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~-----~~~~~~h---------~ 254 (388)
T d1erja_ 204 E---------------DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE-----NESGTGH---------K 254 (388)
T ss_dssp S---------------SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-----------CCC---------S
T ss_pred c---------------cccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccc-----cccccCC---------C
Confidence 1 123345555533356666666788999988765543221100 0000011 1
Q ss_pred cCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEE
Q 001380 837 QHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIR 916 (1089)
Q Consensus 837 ~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~ 916 (1089)
.....++++++|+.+++-+..+.|+.+|..++...........+... ......-.....+++.++|+++++-..++.|+
T Consensus 255 ~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~ 333 (388)
T d1erja_ 255 DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCE-VTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 333 (388)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEE-EEEECCSSCEEEEEECGGGCEEEEEETTSEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccccccccccee-eecccccceEEEEEECCCCCEEEEEeCCCEEE
Confidence 23467899999988887778889999987654332211100000000 00000112346788888888777777889999
Q ss_pred EEeCCCCCceEEEEe
Q 001380 917 YLDLNKEEPELQTLE 931 (1089)
Q Consensus 917 ~~~~~~~~~~~~~l~ 931 (1089)
.+++... ..+.++.
T Consensus 334 vwd~~~~-~~~~~l~ 347 (388)
T d1erja_ 334 FWDKKSG-NPLLMLQ 347 (388)
T ss_dssp EEETTTC-CEEEEEE
T ss_pred EEECCCC-cEEEEEe
Confidence 9999876 2455554
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.30 E-value=2.3e-05 Score=85.22 Aligned_cols=193 Identities=13% Similarity=0.165 Sum_probs=114.1
Q ss_pred CcceeEEeeCCCEEEEEEC------------CCCEEEEEECCCC--eEEEEecCCCCCCCCCCCCcccccccCCceeEEE
Q 001380 658 RPQGLAYNAKKNLLYVADT------------ENHALREIDFVND--TVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCY 723 (1089)
Q Consensus 658 ~P~gla~d~~g~~lyVaD~------------~n~~I~~~d~~~g--~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~ 723 (1089)
.|..|+++++|. +|++-. ..+.|..+|+++. ....+.-.+... ...-..|+|+.+
T Consensus 36 G~EDi~~~~dg~-~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~----------~~~~f~PhGi~l 104 (340)
T d1v04a_ 36 GSEDLEILPNGL-AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTL----------DISSFNPHGIST 104 (340)
T ss_dssp CCCEEEECTTSE-EEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSS----------CGGGCCEEEEEE
T ss_pred CcceEEECCCCc-EEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCC----------CCcceeccceeE
Confidence 467777877765 444421 1367777877653 233332111110 011237999987
Q ss_pred ec--CCC-EEEEEEC--CCcEE--EEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCC---
Q 001380 724 KP--INE-KVYIAMA--GQHQI--WEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSE--- 793 (1089)
Q Consensus 724 ~~--~g~-~lyvad~--~~~~I--~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~--- 793 (1089)
.. +|. +|||.+- ...+| +.++..+..++....-. ...+..|++|++..+| .+|+++..
T Consensus 105 ~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~-----------~~~~~~pNDv~~~~~g-~fy~Tnd~~~~ 172 (340)
T d1v04a_ 105 FIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR-----------HKLLPSVNDIVAVGPE-HFYATNDHYFI 172 (340)
T ss_dssp EECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC-----------CTTCSSEEEEEEEETT-EEEEEESCSCC
T ss_pred EEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecC-----------CccccCccceEEecCC-CEEEecCccCc
Confidence 43 332 6777764 23444 45555555443322111 1345679999999998 99999631
Q ss_pred --------------CCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCC-cEEEEeCCCC
Q 001380 794 --------------SSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNG-QIYVADSYNH 858 (1089)
Q Consensus 794 --------------~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G-~lyVaD~~n~ 858 (1089)
.+.|..+ +++..++++.+ +..|.||++++|+ .|||+++..+
T Consensus 173 ~~~~~~~e~~~~~~~g~v~~~--~~~~~~~~~~~----------------------l~~pNGI~~s~d~~~lyVa~t~~~ 228 (340)
T d1v04a_ 173 DPYLKSWEMHLGLAWSFVTYY--SPNDVRVVAEG----------------------FDFANGINISPDGKYVYIAELLAH 228 (340)
T ss_dssp SHHHHHHHHHTTCCCEEEEEE--CSSCEEEEEEE----------------------ESSEEEEEECTTSSEEEEEEGGGT
T ss_pred ChhhhhhhHhhcCCceeEEEE--cCCceEEEcCC----------------------CCccceeEECCCCCEEEEEeCCCC
Confidence 2233333 34445544332 6689999999988 6999999999
Q ss_pred EEEEEeCCCC-eEEEEeccCCCCCCCCcccccccCCCceEEEcc-CCcEEEEE
Q 001380 859 KIKKLDPASN-RVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQ-NGNLFIAD 909 (1089)
Q Consensus 859 ~I~~~d~~~~-~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~-~G~lyVad 909 (1089)
+|++|+.++. .++...-.. --..|..|.+|+ +|.+|++-
T Consensus 229 ~i~~y~~~~~~~l~~~~~~~------------l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 229 KIHVYEKHANWTLTPLRVLS------------FDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp EEEEEEECTTSCEEEEEEEE------------CSSEEEEEEECTTTCCEEEEE
T ss_pred eEEEEEeCCCcccceEEEec------------CCCCCCccEEecCCCEEEEEE
Confidence 9999876533 232221110 113388999986 67899884
|
| >d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Phosducin domain: Phosducin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.30 E-value=2.5e-07 Score=94.17 Aligned_cols=73 Identities=16% Similarity=0.295 Sum_probs=61.1
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
++.+|||.||++||++|+.+.|.|.+|+.+|++ +.++-|+. + +..+...|
T Consensus 119 ~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~~--vkF~ki~~---------------------------~-~~~~~~~~ 168 (217)
T d2trcp_ 119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYPM--VKFCKIRA---------------------------S-NTGAGDRF 168 (217)
T ss_dssp TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTT--SEEEEEEH---------------------------H-HHTCSTTS
T ss_pred CCCeEEEEEEcCCCCChhhhhhhHHHHhhhccc--ceEEEEcc---------------------------c-cchhHHhC
Confidence 467999999999999999999999999999975 67787742 1 11234568
Q ss_pred CCCceeEEEEECCCCcEEEEecCC
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGE 555 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~ 555 (1089)
+|.++||++++ ++|+++.++.|.
T Consensus 169 ~i~~lPtl~~y-k~G~~v~~~vg~ 191 (217)
T d2trcp_ 169 SSDVLPTLLVY-KGGELISNFISV 191 (217)
T ss_dssp CGGGCSEEEEE-ETTEEEEEETTG
T ss_pred CCCCCCeEEEE-ECCEEEEEEECc
Confidence 99999999999 999999998884
|
| >d2b30a1 c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmodium vivax [TaxId: 5855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Predicted hydrolases Cof domain: PFL1270w orthologue species: Plasmodium vivax [TaxId: 5855]
Probab=98.28 E-value=1.1e-06 Score=93.30 Aligned_cols=73 Identities=10% Similarity=0.028 Sum_probs=54.1
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCC-HHHHHhc
Q 001380 221 LKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVS-LNDILTG 297 (1089)
Q Consensus 221 ~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~-i~~ll~~ 297 (1089)
+.-+...+..+++.++++++++++|||+.||+.|.+.+|. .|..+...+++++ .+++++.+-.+-. +.+++..
T Consensus 205 ~~~K~~~l~~l~~~~~i~~~~vi~~GD~~ND~~Ml~~a~~---~va~~na~~~~k~-~a~~v~~~~~~~g~v~~~l~~ 278 (283)
T d2b30a1 205 GHDKYTGINYLLKHYNISNDQVLVVGDAENDIAMLSNFKY---SFAVANATDSAKS-HAKCVLPVSHREGAVAYLLKK 278 (283)
T ss_dssp TCCHHHHHHHHHHHTTCCGGGEEEEECSGGGHHHHHSCSE---EEECTTCCHHHHH-HSSEECSSCTTTTHHHHHHHH
T ss_pred cchhHHHHHHHhhhcccccceEEEecCChhhHHHHHhCCc---EEEeCCCCHHHHH-hCCEEECCcCCCcHHHHHHHH
Confidence 4567788999999999999999999999999999999994 3444545566655 5788886543322 4555543
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.28 E-value=0.00017 Score=75.55 Aligned_cols=263 Identities=14% Similarity=0.171 Sum_probs=152.9
Q ss_pred ceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEE
Q 001380 604 GKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALR 682 (1089)
Q Consensus 604 ~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~ 682 (1089)
..|+++| +++++++-...+.|.++|.. |+.+.++.+. . .....+++++++..++... ....+.
T Consensus 21 ~~l~~sp-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h-~-------------~~V~~~~~~~~~~~~~~~~-~~~~~~ 84 (317)
T d1vyhc1 21 TRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGH-T-------------DSVQDISFDHSGKLLASCS-ADMTIK 84 (317)
T ss_dssp EEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEECCC-S-------------SCEEEEEECTTSSEEEEEE-TTSCCC
T ss_pred EEEEEcC-CCCEEEEEeCCCeEEEEECCCCCEEEEEeCC-C-------------CcEEEEeeecccccccccc-cccccc
Confidence 4688887 66777777778899999976 6666666432 1 2457899999998544444 455566
Q ss_pred EEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeE-EEEeCCCcccc
Q 001380 683 EIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVT-RAFSGDGYERN 761 (1089)
Q Consensus 683 ~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~-~~~~g~g~~~~ 761 (1089)
.++............ .......+.++++++.++ +....+.+..++..++.. ..+.+.
T Consensus 85 ~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~----- 142 (317)
T d1vyhc1 85 LWDFQGFECIRTMHG----------------HDHNVSSVSIMPNGDHIV-SASRDKTIKMWEVQTGYCVKTFTGH----- 142 (317)
T ss_dssp EEETTSSCEEECCCC----------------CSSCEEEEEECSSSSEEE-EEETTSEEEEEETTTCCEEEEEECC-----
T ss_pred ccccccccccccccc----------------ccccceeeeccCCCceEE-eeccCcceeEeecccceeeeEEccC-----
Confidence 666555443332210 112456788888886554 445677888888877654 334321
Q ss_pred CCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceE
Q 001380 762 LNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLG 841 (1089)
Q Consensus 762 ~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~g 841 (1089)
-.....+++++++ .++++-+..+.|+.++...+.......+.... -....+.................
T Consensus 143 ----------~~~~~~~~~~~~~-~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~ 210 (317)
T d1vyhc1 143 ----------REWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKAELREHRHV-VECISWAPESSYSSISEATGSET 210 (317)
T ss_dssp ----------SSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSC-EEEEEECCSCGGGGGGGCCSCC-
T ss_pred ----------CCcceeeecccCC-CEEEEEeCCCeEEEEeeccceeeEEEecCCCC-ceEEEEeeccccceeecccccee
Confidence 1235678889988 45555556788999988766543322110000 00001111111111111112223
Q ss_pred EEEccCCcEEEEeCCCCEEEEEeCCCCeE-EEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeC
Q 001380 842 VYCAKNGQIYVADSYNHKIKKLDPASNRV-STLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDL 920 (1089)
Q Consensus 842 va~~~~G~lyVaD~~n~~I~~~d~~~~~v-~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~ 920 (1089)
......+.++++-+..+.|+.+|..++.. .++.+. -....++++.++|+++++-..++.|+.+++
T Consensus 211 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 276 (317)
T d1vyhc1 211 KKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH--------------DNWVRGVLFHSGGKFILSCADDKTLRVWDY 276 (317)
T ss_dssp ------CCEEEEEETTSEEEEEETTTTEEEEEEECC--------------SSCEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred eeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCC--------------CCCEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 33344566777777778899998877654 344331 123567889899987777778899999998
Q ss_pred CCCCceEEEEe
Q 001380 921 NKEEPELQTLE 931 (1089)
Q Consensus 921 ~~~~~~~~~l~ 931 (1089)
.... .+.++.
T Consensus 277 ~~~~-~~~~~~ 286 (317)
T d1vyhc1 277 KNKR-CMKTLN 286 (317)
T ss_dssp TTSC-CCEEEE
T ss_pred CCCc-EEEEEc
Confidence 7652 345554
|
| >d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like structure containing protein C330018D20Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.26 E-value=2.4e-07 Score=81.79 Aligned_cols=81 Identities=15% Similarity=0.261 Sum_probs=60.2
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
..-++|+.||++||++|....+.|.++..+|. +.++-+.. +.+.++.+.|
T Consensus 14 ~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~---~~~v~vd~---------------------------~~~~~l~~~y 63 (100)
T d1wjka_ 14 RALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI---LQEVDITL---------------------------PENSTWYERY 63 (100)
T ss_dssp CCCCEEEEEECSSCHHHHHHHHHTSTTSSSSE---EEEEETTS---------------------------STTHHHHHHS
T ss_pred CCCCEEEEEECCCCCChHHHHHHHHHhhhhcc---eEEEeccc---------------------------ccCHHHHHHh
Confidence 45678889999999999999999988876654 45554422 4567899999
Q ss_pred CCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHH
Q 001380 532 GVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAA 568 (1089)
Q Consensus 532 ~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~ 568 (1089)
+++ +|+++ | +|+.+ ..|..+.+.+++.|+++
T Consensus 64 ~~~-VPvl~-i--dg~~~--~~g~~d~~~L~~~L~~l 94 (100)
T d1wjka_ 64 KFD-IPVFH-L--NGQFL--MMHRVNTSKLEKQLRKL 94 (100)
T ss_dssp SSS-CSEEE-E--SSSEE--EESSCCHHHHHHHHHSS
T ss_pred ccc-CCcee-e--cCceE--EeCCCCHHHHHHHHHHH
Confidence 987 99765 4 56665 34677888888777653
|
| >d2bdua1 c.108.1.21 (A:7-297) Cytosolic 5'-nucleotidase III {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Pyrimidine 5'-nucleotidase (UMPH-1) domain: Cytosolic 5'-nucleotidase III species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.24 E-value=1.5e-06 Score=91.77 Aligned_cols=95 Identities=16% Similarity=0.104 Sum_probs=67.2
Q ss_pred CCCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcC-----C-c--------cCCCCCHHHHH
Q 001380 164 GIGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSAD-----A-F--------ENLKPAPDIFL 229 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~-----~-~--------~~~KP~~~~~~ 229 (1089)
..+.||+.+++..|+++|++++|+|++....++.+++++|+.... -.|++.. + . ....-+.....
T Consensus 134 i~Lr~G~~e~~~~l~~~~i~~~IvSgG~~~~ie~vl~~lg~~~~n-i~I~sN~l~f~~~~~~~~~~~~~i~~~~K~~~~~ 212 (291)
T d2bdua1 134 VMLKEGYENFFGKLQQHGIPVFIFSAGIGDVLEEVIRQAGVYHSN-VKVVSNFMDFDENGVLKGFKGELIHVFNKHDGAL 212 (291)
T ss_dssp CCBCBTHHHHHHHHHHHTCCEEEEEEEEHHHHHHHHHHTTCCBTT-EEEEEECEEECTTSBEEEECSSCCCTTCHHHHHH
T ss_pred CCcccCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHcCCCccC-ceEEeeEEEEeCCeeEeeccCCccccccCcchhh
Confidence 478999999999999999999999999999999999999986221 1344321 1 0 01111223333
Q ss_pred HHHHHc--CCCCCcEEEEcCChhhHHHHHHcC
Q 001380 230 SASKIL--NVPTSECIVIEDALAGVQAAKAAQ 259 (1089)
Q Consensus 230 ~~l~~l--gv~p~~~v~VGD~~~Di~aA~~aG 259 (1089)
...+.+ .-..+++++|||+.+|+.||..+.
T Consensus 213 ~~~~~~~~~~~~~~vI~iGDs~~Dl~Ma~g~~ 244 (291)
T d2bdua1 213 KNTDYFSQLKDNSNIILLGDSQGDLRMADGVA 244 (291)
T ss_dssp TTHHHHHHTTTCCEEEEEESSSGGGGTTTTCS
T ss_pred hhHHHHhccCCcCcEEEEeCCHhHHHHHhCCc
Confidence 333332 235588999999999999998653
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.24 E-value=0.00016 Score=79.18 Aligned_cols=254 Identities=13% Similarity=0.113 Sum_probs=148.6
Q ss_pred ceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEE
Q 001380 604 GKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALR 682 (1089)
Q Consensus 604 ~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~ 682 (1089)
..+++++ +++++++-...+.|..++.. ++.+..+.+. . .....+++.+++..+++++ ..+.|+
T Consensus 125 ~~l~~s~-~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h-~-------------~~v~~~~~~~~~~~~~~~~-~~~~i~ 188 (388)
T d1erja_ 125 RSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGH-E-------------QDIYSLDYFPSGDKLVSGS-GDRTVR 188 (388)
T ss_dssp EEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCC-S-------------SCEEEEEECTTSSEEEEEE-TTSEEE
T ss_pred EEEEECC-CCCcceecccccccccccccccccccccccc-c-------------ccccccccccccccccccc-cceeee
Confidence 4578887 66677776677889999876 5555444322 1 2457788888888665554 577899
Q ss_pred EEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccC
Q 001380 683 EIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNL 762 (1089)
Q Consensus 683 ~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~ 762 (1089)
.+|..+.......... .....+++.+..+.++++....+.|..++..++.............
T Consensus 189 ~~d~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~- 250 (388)
T d1erja_ 189 IWDLRTGQCSLTLSIE-----------------DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESG- 250 (388)
T ss_dssp EEETTTTEEEEEEECS-----------------SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-------
T ss_pred eeeccccccccccccc-----------------cccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccc-
Confidence 9998877655543211 1344566666555666666667889999988775443321110000
Q ss_pred CCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEE
Q 001380 763 NGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGV 842 (1089)
Q Consensus 763 ~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gv 842 (1089)
...-.....|+++++++.| ++-+..+.|+.++..++........ +........+ ...-.....+
T Consensus 251 ------~~h~~~v~~l~~s~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~--------~~~~~~v~~~ 314 (388)
T d1erja_ 251 ------TGHKDSVYSVVFTRDGQSV-VSGSLDRSVKLWNLQNANNKSDSKT-PNSGTCEVTY--------IGHKDFVLSV 314 (388)
T ss_dssp ------CCCSSCEEEEEECTTSSEE-EEEETTSEEEEEEC----------------CEEEEE--------ECCSSCEEEE
T ss_pred ------cCCCCCEEEEEECCCCCEE-EEEECCCcEEEEeccCCcccccccc-ccccceeeec--------ccccceEEEE
Confidence 0111234689999998555 4555678999998775432211000 0000000000 0001234678
Q ss_pred EEccCCcEEEEeCCCCEEEEEeCCCCeE-EEEeccCCCCCCCCcccccccCCCceEE------EccCCcEEEEECCCCEE
Q 001380 843 YCAKNGQIYVADSYNHKIKKLDPASNRV-STLAGIGKAGFKDGAALAAQLSEPAGII------EAQNGNLFIADTNNNII 915 (1089)
Q Consensus 843 a~~~~G~lyVaD~~n~~I~~~d~~~~~v-~t~~g~g~~g~~~g~~~~~~l~~P~gi~------vd~~G~lyVad~~n~~I 915 (1089)
+++++|+++++-+..+.|+.+|..++.. .++.+.. .....++ +.++|+++++-..+++|
T Consensus 315 ~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~--------------~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I 380 (388)
T d1erja_ 315 ATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR--------------NSVISVAVANGSSLGPEYNVFATGSGDCKA 380 (388)
T ss_dssp EECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCS--------------SCEEEEEECSSCTTCTTCEEEEEEETTSEE
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCC--------------CCEEEEEEecCcccCCCCCEEEEEeCCCEE
Confidence 9999998888877889999999876654 4554321 1123333 34578888888888999
Q ss_pred EEEeCC
Q 001380 916 RYLDLN 921 (1089)
Q Consensus 916 ~~~~~~ 921 (1089)
++++++
T Consensus 381 ~iW~~~ 386 (388)
T d1erja_ 381 RIWKYK 386 (388)
T ss_dssp EEEEEE
T ss_pred EEEeee
Confidence 888763
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.20 E-value=2.8e-05 Score=84.39 Aligned_cols=224 Identities=14% Similarity=0.083 Sum_probs=136.1
Q ss_pred CCCCCCceEEEe---ecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEE
Q 001380 598 SPLKFPGKLAID---ILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVA 674 (1089)
Q Consensus 598 ~~l~~P~~vavd---~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVa 674 (1089)
+.+-+| .+... .++..|||.|..++||.++|.+......|....+ ...++|+...++++..||.
T Consensus 83 GD~HHP-~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn------------~~~~HG~r~~~~p~T~YV~ 149 (459)
T d1fwxa2 83 GDLHHV-HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPN------------AKGIHGLRPQKWPRSNYVF 149 (459)
T ss_dssp CCBCCE-EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSS------------CCSEEEEEECCSSBCSEEE
T ss_pred CCcCCC-cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCC------------CCCCceeecccCCCeEEEE
Confidence 344556 33332 2367899999999999999998654443322212 2367999998877778887
Q ss_pred ECCCC-------------------EEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC
Q 001380 675 DTENH-------------------ALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA 735 (1089)
Q Consensus 675 D~~n~-------------------~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~ 735 (1089)
..... .+..+|.++.++..-...+ .+|.++.++++|+++|++..
T Consensus 150 ~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~-----------------g~ld~~~~s~dGK~af~Tsy 212 (459)
T d1fwxa2 150 CNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVS-----------------GNLDNCDADYEGKWAFSTSY 212 (459)
T ss_dssp EEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEES-----------------SCCCCEEECSSSSEEEEEES
T ss_pred ccCccccccCCCCccccchhhcceEEEEEecCCceEEEEeeeC-----------------CChhccccCCCCCEEEEEec
Confidence 54332 3457888877766544222 16789999999999999875
Q ss_pred CCc--------------EEEEEECC-------CCe------EEEEeCCCccccCCCCCC-CCccccCCceEEEcCCCCEE
Q 001380 736 GQH--------------QIWEHSTV-------DGV------TRAFSGDGYERNLNGSSS-LNTSFAQPSGISLSPDFMEI 787 (1089)
Q Consensus 736 ~~~--------------~I~~~~~~-------~g~------~~~~~g~g~~~~~~g~~~-~~~~~~~P~glav~~~g~~l 787 (1089)
.+. .+..++.. .|. +.++.+..... .... .-.--..|+|+.++|||+++
T Consensus 213 NSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~---~~v~~yIPVpKsPHGV~vSPDGKyi 289 (459)
T d1fwxa2 213 NSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEAS---SLFTRYIPIANNPHGCNMAPDKKHL 289 (459)
T ss_dssp CTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG-----CSSEEEEEEESSCCCEEECTTSSEE
T ss_pred cccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCC---cceeEEEecCCCCCceEECCCCCEE
Confidence 432 23333321 011 12222111000 0000 00011579999999999999
Q ss_pred EEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCc-cccccccCceEEEEccCCcEEEEeCCCCEEEEEeC
Q 001380 788 YVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGM-GSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDP 865 (1089)
Q Consensus 788 yvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~-~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~ 865 (1089)
||+...+..+.+++.+. .-..+.+. . .+ ++.. +....--.|+--++|..|+.|.+-.-...|.+.+.
T Consensus 290 ~VaGKLs~tVSViD~~K-i~~~~~~~--~------~~--~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~ 357 (459)
T d1fwxa2 290 CVAGKLSPTVTVLDVTR-FDAVFYEN--A------DP--RSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNI 357 (459)
T ss_dssp EEECTTSSBEEEEEGGG-HHHHHHSC--C-------G--GGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred EEeCCcCCcEEEEEehh-hhhhhccc--C------Cc--cccEEeecccCcCccccccCCCceEEEEeeccceEEEEec
Confidence 99999999999999751 00000000 0 00 0000 00011236999999999999999999999999875
|
| >d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=98.18 E-value=8.2e-06 Score=78.59 Aligned_cols=103 Identities=16% Similarity=0.291 Sum_probs=83.6
Q ss_pred eeecccccCCCEEEEEEe-cCCCcchhh-hhhhHHHHHHHc-CCCCE-EEEEEeCCCCCChhcHHHHHHHHHHcCCcc-c
Q 001380 444 PLQFRRDLKGKVVVLDFW-TYCCINCMH-VLPDLEFLEKKY-KDMPF-TVVGVHSAKFDNEKDLEAIRNAVLRYGISH-P 518 (1089)
Q Consensus 444 ~~~l~~~~~gk~vll~Fw-a~wC~~C~~-~~p~l~~l~~~~-~~~~v-~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~-~ 518 (1089)
.+++++.++||.|||.+. +.+.|.|.. .+|.+.+.++++ +.+|+ .|+.|++ +++-..++|.+.++++. .
T Consensus 33 ~~~~~d~f~~KkVvl~~vPgAFTp~Cs~~hlp~y~~~~d~f~k~~gvd~I~~iSv------nD~fv~~aW~~~~~~~~I~ 106 (179)
T d1xiya1 33 SIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFDDIYCITN------NDIYVLKSWFKSMDIKKIK 106 (179)
T ss_dssp EEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCSEEEEEES------SCHHHHHHHHHHTTCCSSE
T ss_pred EeeHHHHhCCCeEEEEEcccccCCccchhhCcchhhhHHHHHHhcCCceEEEEec------CCHHHHHHHHhhcCcceEE
Confidence 566745569998888777 789999965 589999999998 66776 6888876 57777888888899876 8
Q ss_pred eeecCChhHHHHhCC-----------CceeEEEEECCCCcEEEEec
Q 001380 519 VVNDGDMNLWRELGV-----------NSWPTFAVVGPNGKLLAQLA 553 (1089)
Q Consensus 519 v~~d~~~~l~~~~~v-----------~~~Pt~~lid~~G~i~~~~~ 553 (1089)
.+.|+++++++.||+ +++...++|+ +|+|.+.+.
T Consensus 107 ~lsD~~g~f~k~lg~~~d~~~~g~G~Rs~R~a~iid-dg~I~~~~v 151 (179)
T d1xiya1 107 YISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKMFQ 151 (179)
T ss_dssp EEECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEEEE
T ss_pred EeeCCchHHHHhhhcccccccCCCeeEEeeEEEEEE-CCEEEEEEE
Confidence 899999999999986 3467789997 899988754
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.16 E-value=2.5e-05 Score=84.66 Aligned_cols=185 Identities=10% Similarity=0.005 Sum_probs=118.2
Q ss_pred Eee-CCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC-cEEE
Q 001380 664 YNA-KKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ-HQIW 741 (1089)
Q Consensus 664 ~d~-~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~-~~I~ 741 (1089)
++| +|+.+-.+. .+.|+.++.+++.+..+. .+ ....+++|+|+|+.|+++.... +.|+
T Consensus 10 fSP~dG~~~a~~~--~g~v~v~d~~~~~~~~~~-~~-----------------~~v~~~~~spDg~~l~~~~~~~g~~v~ 69 (360)
T d1k32a3 10 FSPLDGDLIAFVS--RGQAFIQDVSGTYVLKVP-EP-----------------LRIRYVRRGGDTKVAFIHGTREGDFLG 69 (360)
T ss_dssp EEECGGGCEEEEE--TTEEEEECTTSSBEEECS-CC-----------------SCEEEEEECSSSEEEEEEEETTEEEEE
T ss_pred ccCCCCCEEEEEE--CCeEEEEECCCCcEEEcc-CC-----------------CCEEEEEECCCCCEEEEEEcCCCCEEE
Confidence 777 787444433 568999999888887763 11 1467899999998887765443 5789
Q ss_pred EEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCc
Q 001380 742 EHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNL 821 (1089)
Q Consensus 742 ~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l 821 (1089)
.+|..++....+.+. ......++++|+|+.|..+ ...+.++.++..++.........
T Consensus 70 v~d~~~~~~~~~~~~---------------~~~v~~~~~spdg~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~------- 126 (360)
T d1k32a3 70 IYDYRTGKAEKFEEN---------------LGNVFAMGVDRNGKFAVVA-NDRFEIMTVDLETGKPTVIERSR------- 126 (360)
T ss_dssp EEETTTCCEEECCCC---------------CCSEEEEEECTTSSEEEEE-ETTSEEEEEETTTCCEEEEEECS-------
T ss_pred EEECCCCcEEEeeCC---------------CceEEeeeeccccccccee-ccccccccccccccceeeeeecc-------
Confidence 999999888776531 2245689999999655554 56678999998877665443211
Q ss_pred cccCCCCCccccccccCceEEEEccCCcEEE-Ee---------CCCCEEEEEeCCCCeEEEEeccCCCCCCCCccccccc
Q 001380 822 FKFGDRDGMGSEVLLQHPLGVYCAKNGQIYV-AD---------SYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQL 891 (1089)
Q Consensus 822 ~~~g~~dg~~~~~~l~~P~gva~~~~G~lyV-aD---------~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l 891 (1089)
.....++++.++|+.++ +. ...+.++.+|..++....+... -
T Consensus 127 --------------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~--------------~ 178 (360)
T d1k32a3 127 --------------EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTE--------------N 178 (360)
T ss_dssp --------------SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCS--------------S
T ss_pred --------------cccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeeccc--------------c
Confidence 11345688899986443 32 2234677888887766655321 1
Q ss_pred CCCceEEEccCCcEEEEECCCCEEEEEe
Q 001380 892 SEPAGIIEAQNGNLFIADTNNNIIRYLD 919 (1089)
Q Consensus 892 ~~P~gi~vd~~G~lyVad~~n~~I~~~~ 919 (1089)
....++++.++|+.++.-...+.+...+
T Consensus 179 ~~~~~~~~spdg~~l~~~s~~~~~~~~d 206 (360)
T d1k32a3 179 SHDYAPAFDADSKNLYYLSYRSLDPSPD 206 (360)
T ss_dssp SBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred cccccccccCCCCEEEEEeCCCceEccc
Confidence 2234567788886333333334444443
|
| >d1xvia_ c.108.1.10 (A:) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Predicted hydrolases Cof domain: Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) species: Escherichia coli [TaxId: 562]
Probab=98.14 E-value=3.4e-06 Score=86.42 Aligned_cols=38 Identities=16% Similarity=0.133 Sum_probs=32.8
Q ss_pred ccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCC
Q 001380 168 PGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLP 205 (1089)
Q Consensus 168 pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~ 205 (1089)
+.+.++|++|+++|++++++|++....+...++.+++.
T Consensus 24 ~~~~~al~~l~~~Gi~~~i~TGR~~~~~~~~~~~~~~~ 61 (232)
T d1xvia_ 24 QPAAPWLTRLREANVPVILCSSKTSAEMLYLQKTLGLQ 61 (232)
T ss_dssp CTTHHHHHHHHHTTCCEEEECSSCHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCChhhchhHHHHhccC
Confidence 44567888899999999999999999999999998875
|
| >d1wzca1 c.108.1.10 (A:1-243) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Predicted hydrolases Cof domain: Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.11 E-value=5.5e-06 Score=85.56 Aligned_cols=44 Identities=7% Similarity=0.041 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHcC-CCCCcEEEEcCChhhHHHHHHcCCeEEEEcC
Q 001380 223 PAPDIFLSASKILN-VPTSECIVIEDALAGVQAAKAAQMRCIAVTT 267 (1089)
Q Consensus 223 P~~~~~~~~l~~lg-v~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~ 267 (1089)
.+...+...+++++ +.++++++|||+.||+.|.+.+| ..+.|..
T Consensus 179 ~K~~al~~l~~~~~~~~~~~~~a~GD~~ND~~Ml~~a~-~~va~~N 223 (243)
T d1wzca1 179 DKGKAAKILLDFYKRLGQIESYAVGDSYNDFPMFEVVD-KVFIVGS 223 (243)
T ss_dssp CHHHHHHHHHHHHHTTSCEEEEEEECSGGGHHHHTTSS-EEEEESS
T ss_pred ccHHHHHHHHHHhcCCCcccEEEEcCCHhHHHHHHcCC-cEEEeCC
Confidence 34555778888885 88899999999999999999999 4455543
|
| >d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Endoplasmic reticulum protein ERP29, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.09 E-value=3.3e-06 Score=77.45 Aligned_cols=91 Identities=16% Similarity=0.247 Sum_probs=66.1
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCC-CEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHH
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDM-PFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRE 530 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~-~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~ 530 (1089)
++|.+||.|+++||..|.. |.++++++++.+. .+.+-.|.+.+.+. +.+..++..
T Consensus 20 ~~~~~lV~F~~~wc~~~~~--~~~~~la~~~~~~~~~~~~~V~~~~vd~----------------------~~n~~l~~~ 75 (122)
T d1g7ea_ 20 KSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDYGD----------------------KLNMELSEK 75 (122)
T ss_dssp GSSEEEEEEECSSCCTTTT--HHHHHHHHHGGGCSSEEEEEEESCCTTS----------------------CHHHHHHHH
T ss_pred hCCeEEEEEecCCcCcccC--HHHHHHHHHHHHHHHHhhhccceeeccc----------------------cccHHHHHh
Confidence 5789999999999988875 8899999998753 44333454433222 335568777
Q ss_pred hC--CCceeEEEEECCCCcE--EEEecCCCchhhHHHHHHH
Q 001380 531 LG--VNSWPTFAVVGPNGKL--LAQLAGEGHRKDLDDLVEA 567 (1089)
Q Consensus 531 ~~--v~~~Pt~~lid~~G~i--~~~~~G~~~~~~l~~~l~~ 567 (1089)
|+ |.++||++++ ++|.. ...+.|..+.+.+.++|++
T Consensus 76 ~~~~I~~yPTi~~f-~~G~~~~~~~y~G~rt~~~l~~fi~~ 115 (122)
T d1g7ea_ 76 YKLDKESYPVFYLF-RDGDFENPVPYSGAVKVGAIQRWLKG 115 (122)
T ss_dssp HTCSSSSCEEEEEE-ESSCCCCCEEEESCCCHHHHHHHHHT
T ss_pred hcccccCCCeEEEE-ecCcccCceecCCCCCHHHHHHHHHh
Confidence 65 7799999999 56643 2457899899988888764
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.08 E-value=0.0012 Score=70.48 Aligned_cols=259 Identities=13% Similarity=0.052 Sum_probs=148.2
Q ss_pred CCCCCCceEEEeecCCeEEEEeCCCCEEEEEeCC-C--CEEEEEecCCCCCCCCCCCCccccCCcceeEEeeC--CCEEE
Q 001380 598 SPLKFPGKLAIDILNNRLFISDSNHNRIVVTDLD-G--NFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAK--KNLLY 672 (1089)
Q Consensus 598 ~~l~~P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g--~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~--g~~ly 672 (1089)
+.-.+|..+++++.+..|.++......|..++.. . ..+..+.+. . -.....++++|. |. ++
T Consensus 15 t~~~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh-~------------~~~v~~v~fsP~~~g~-~l 80 (325)
T d1pgua1 15 TQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGH-G------------SSVVTTVKFSPIKGSQ-YL 80 (325)
T ss_dssp CCTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTT-T------------TSCEEEEEECSSTTCC-EE
T ss_pred CCCCCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCC-C------------CCCEEEEEEeeCCCCC-EE
Confidence 3344788999998666666664332223334322 1 122233221 0 013478889874 45 44
Q ss_pred EEECCCCEEEEEECCCCe----EEEEecCCCCCCCCCCCCcccccccC-CceeEEEecCCCEEEEEECC-CcEEEEEECC
Q 001380 673 VADTENHALREIDFVNDT----VRTLAGNGTKGSDYQGGEKGTSQLLN-SPWDVCYKPINEKVYIAMAG-QHQIWEHSTV 746 (1089)
Q Consensus 673 VaD~~n~~I~~~d~~~g~----v~~~ag~g~~~~~~~~~~~~~~~~l~-~P~~la~~~~g~~lyvad~~-~~~I~~~~~~ 746 (1089)
++-..++.|+.+|...+. +...... ...... .-.++++++++..+.++..+ ...+..++.+
T Consensus 81 asgs~Dg~i~iWd~~~~~~~~~~~~~~~~-------------~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~ 147 (325)
T d1pgua1 81 CSGDESGKVIVWGWTFDKESNSVEVNVKS-------------EFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD 147 (325)
T ss_dssp EEEETTSEEEEEEEEEEGGGTEEEEEEEE-------------EEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT
T ss_pred EEEeCCCCEEEeeecCCcceeeeeccccc-------------ccccccCcEEEEEECCCCCccceeeccccceEEEEeec
Confidence 444567888888764321 1111000 000011 23689999999888776654 3446666666
Q ss_pred CCeE-EEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccC
Q 001380 747 DGVT-RAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFG 825 (1089)
Q Consensus 747 ~g~~-~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g 825 (1089)
++.. ..+.+. -..-..++++++++.++++-+..+.|+.++........-....
T Consensus 148 ~~~~~~~~~~h---------------~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~----------- 201 (325)
T d1pgua1 148 SGNSLGEVSGH---------------SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTH----------- 201 (325)
T ss_dssp TCCEEEECCSC---------------SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSS-----------
T ss_pred ccccceeeeec---------------ccccccccccccccceEEEeecccccccccccccccceecccc-----------
Confidence 5543 333221 1234678999988777777777889999987654332211100
Q ss_pred CCCCccccccccCceEEEEccC-CcEEEEeCCCCEEEEEeCCCCeE-EEEeccCCCCCCCCcccccccCCCceEEEc---
Q 001380 826 DRDGMGSEVLLQHPLGVYCAKN-GQIYVADSYNHKIKKLDPASNRV-STLAGIGKAGFKDGAALAAQLSEPAGIIEA--- 900 (1089)
Q Consensus 826 ~~dg~~~~~~l~~P~gva~~~~-G~lyVaD~~n~~I~~~d~~~~~v-~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd--- 900 (1089)
...-....+++++|+ +.++++-...+.|+.+|..++.. .++.+.. ....++.+.
T Consensus 202 -------~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~--------------~~v~~~~~s~~~ 260 (325)
T d1pgua1 202 -------HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQ--------------EPVQGGIFALSW 260 (325)
T ss_dssp -------SCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTT--------------BCCCSCEEEEEE
T ss_pred -------cCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccc--------------cccccceeeeec
Confidence 001123467899986 57888888889999999876654 3443211 112233332
Q ss_pred cCCcEEEEECCCCEEEEEeCCCCCceEEEEe
Q 001380 901 QNGNLFIADTNNNIIRYLDLNKEEPELQTLE 931 (1089)
Q Consensus 901 ~~G~lyVad~~n~~I~~~~~~~~~~~~~~l~ 931 (1089)
++|+.+++-..++.|+++++..+ ..+.++.
T Consensus 261 ~dg~~l~s~s~D~~i~iwd~~~~-~~~~~~~ 290 (325)
T d1pgua1 261 LDSQKFATVGADATIRVWDVTTS-KCVQKWT 290 (325)
T ss_dssp SSSSEEEEEETTSEEEEEETTTT-EEEEEEE
T ss_pred cCCCEEEEEeCCCeEEEEECCCC-CEEEEEE
Confidence 57777788788899999999876 2344444
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.08 E-value=0.00017 Score=79.18 Aligned_cols=224 Identities=12% Similarity=0.054 Sum_probs=131.4
Q ss_pred ceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecC-CCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCc
Q 001380 660 QGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGN-GTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQH 738 (1089)
Q Consensus 660 ~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~-g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~ 738 (1089)
..++++|+|+.|.+ -..++.|+.++.+++....+... |- -.....|+|+|+++.|..+. ..+
T Consensus 11 t~~~~s~dg~~la~-~~~~~~i~iw~~~~~~~~~~~~l~gH---------------~~~V~~l~fsp~~~~l~s~s-~D~ 73 (371)
T d1k8kc_ 11 SCHAWNKDRTQIAI-CPNNHEVHIYEKSGNKWVQVHELKEH---------------NGQVTGVDWAPDSNRIVTCG-TDR 73 (371)
T ss_dssp CEEEECTTSSEEEE-ECSSSEEEEEEEETTEEEEEEEEECC---------------SSCEEEEEEETTTTEEEEEE-TTS
T ss_pred EEEEECCCCCEEEE-EeCCCEEEEEECCCCCEEEEEEecCC---------------CCCEEEEEECCCCCEEEEEE-CCC
Confidence 78999999995544 45678999999887754433210 10 11457899999997665554 356
Q ss_pred EEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCC
Q 001380 739 QIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFP 818 (1089)
Q Consensus 739 ~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~ 818 (1089)
.|+.||..++......... ..-.....++++|+++.++++ +..+.|+.++.+..........
T Consensus 74 ~i~vWd~~~~~~~~~~~~~------------~~~~~v~~i~~~p~~~~l~~~-s~d~~i~i~~~~~~~~~~~~~~----- 135 (371)
T d1k8kc_ 74 NAYVWTLKGRTWKPTLVIL------------RINRAARCVRWAPNEKKFAVG-SGSRVISICYFEQENDWWVCKH----- 135 (371)
T ss_dssp CEEEEEEETTEEEEEEECC------------CCSSCEEEEEECTTSSEEEEE-ETTSSEEEEEEETTTTEEEEEE-----
T ss_pred eEEEEeecccccccccccc------------cccccccccccccccccceee-cccCcceeeeeecccccccccc-----
Confidence 7777777666543222100 011235689999999555554 4567777766554322111100
Q ss_pred CCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCC--CCCCcc---cccccCC
Q 001380 819 DNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAG--FKDGAA---LAAQLSE 893 (1089)
Q Consensus 819 ~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g--~~~g~~---~~~~l~~ 893 (1089)
+..+. -.....++++|+|.++++-+..+.|+.++...+...........+ ...+.. ....-..
T Consensus 136 ---~~~~~---------~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (371)
T d1k8kc_ 136 ---IKKPI---------RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW 203 (371)
T ss_dssp ---ECTTC---------CSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC
T ss_pred ---ccccc---------ccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCc
Confidence 00000 113467899999998888888899999987543321111000000 000000 0112233
Q ss_pred CceEEEccCCcEEEEECCCCEEEEEeCCCCCceEEEEe
Q 001380 894 PAGIIEAQNGNLFIADTNNNIIRYLDLNKEEPELQTLE 931 (1089)
Q Consensus 894 P~gi~vd~~G~lyVad~~n~~I~~~~~~~~~~~~~~l~ 931 (1089)
..++++.++|+.+++-..++.|..+++... ..+.++.
T Consensus 204 v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~-~~~~~~~ 240 (371)
T d1k8kc_ 204 VHGVCFSANGSRVAWVSHDSTVCLADADKK-MAVATLA 240 (371)
T ss_dssp EEEEEECSSSSEEEEEETTTEEEEEEGGGT-TEEEEEE
T ss_pred EEEEEeecccccccccccCCcceEEeeecc-cceeeee
Confidence 567889999987777777899999999876 3445444
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.04 E-value=0.0011 Score=70.91 Aligned_cols=249 Identities=10% Similarity=0.096 Sum_probs=144.3
Q ss_pred ceEEEeec-CCeEEEEeCCCCEEEEEeCC-CC---EEE-EEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC
Q 001380 604 GKLAIDIL-NNRLFISDSNHNRIVVTDLD-GN---FIV-QIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE 677 (1089)
Q Consensus 604 ~~vavd~~-~g~L~vsd~~~~~I~~~~~~-g~---~~~-~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~ 677 (1089)
..+++.|. +++++++-..+++|.+++.. ++ ... ..... . ......-..++++++|..+.++...
T Consensus 67 ~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~-~---------~~~~~~v~~v~~s~~~~~l~~~~~~ 136 (325)
T d1pgua1 67 TTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSE-F---------QVLAGPISDISWDFEGRRLCVVGEG 136 (325)
T ss_dssp EEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEE-E---------ECCSSCEEEEEECTTSSEEEEEECC
T ss_pred EEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccc-c---------ccccCcEEEEEECCCCCccceeecc
Confidence 45777763 56677777778899888753 11 111 10000 0 0001123678999999877766543
Q ss_pred -CCEEEEEECCCCe-EEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeC
Q 001380 678 -NHALREIDFVNDT-VRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSG 755 (1089)
Q Consensus 678 -n~~I~~~d~~~g~-v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g 755 (1089)
...++.++.+++. +.++.+.. ..-..+++++.++.++++....+.|..|+...+....-..
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~h~-----------------~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~ 199 (325)
T d1pgua1 137 RDNFGVFISWDSGNSLGEVSGHS-----------------QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR 199 (325)
T ss_dssp SSCSEEEEETTTCCEEEECCSCS-----------------SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC
T ss_pred ccceEEEEeecccccceeeeecc-----------------cccccccccccccceEEEeecccccccccccccccceecc
Confidence 4567788877654 34443211 1346789999887777777778889889877665443221
Q ss_pred CCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeE-EEecCCCCCCCCccccCCCCCccccc
Q 001380 756 DGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR-LLAGGDPIFPDNLFKFGDRDGMGSEV 834 (1089)
Q Consensus 756 ~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~-~~~g~~~~~~~~l~~~g~~dg~~~~~ 834 (1089)
.. ...-.....++++|+++.++++-...+.|+.++..++... .+.+... ..
T Consensus 200 ~~-----------~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~-------------~v---- 251 (325)
T d1pgua1 200 TH-----------HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE-------------PV---- 251 (325)
T ss_dssp SS-----------SCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTB-------------CC----
T ss_pred cc-----------cCCCCccEEeeeccccceeccccccccceeeeeecccccccccccccc-------------cc----
Confidence 11 0111234689999986688887778899999998866543 2222110 00
Q ss_pred cccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeE-EEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCC
Q 001380 835 LLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRV-STLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNN 913 (1089)
Q Consensus 835 ~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v-~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~ 913 (1089)
...-..+++ ++|+.+++-+..+.|+.+|..++.+ .++...+.. .-....+++..+++ .+++-..++
T Consensus 252 -~~~~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~-~l~s~s~dg 318 (325)
T d1pgua1 252 -QGGIFALSW-LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ----------LGNQQVGVVATGNG-RIISLSLDG 318 (325)
T ss_dssp -CSCEEEEEE-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTC----------GGGCEEEEEEEETT-EEEEEETTS
T ss_pred -ccceeeeec-cCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCc----------ccCeEEEEEECCCC-EEEEEECCC
Confidence 000112222 5788788888889999999887765 334322111 00111123333333 556666678
Q ss_pred EEEEEeC
Q 001380 914 IIRYLDL 920 (1089)
Q Consensus 914 ~I~~~~~ 920 (1089)
.|+++++
T Consensus 319 ~i~vwdl 325 (325)
T d1pgua1 319 TLNFYEL 325 (325)
T ss_dssp CEEEEET
T ss_pred EEEEEEC
Confidence 8888874
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.04 E-value=0.00017 Score=75.82 Aligned_cols=240 Identities=8% Similarity=0.037 Sum_probs=138.8
Q ss_pred ceEEEeecCCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEE
Q 001380 604 GKLAIDILNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALRE 683 (1089)
Q Consensus 604 ~~vavd~~~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~ 683 (1089)
..+++.+ +|+++++.. .+.+..++..+...... . .........+..+++.++|+.+++.. .+.++.
T Consensus 59 ~~v~~~~-~g~~~~~~~-d~~v~~~~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~s~~g~~~~~~~--~~~i~~ 124 (299)
T d1nr0a2 59 TGIKTTS-KGDLFTVSW-DDHLKVVPAGGSGVDSS-----K-----AVANKLSSQPLGLAVSADGDIAVAAC--YKHIAI 124 (299)
T ss_dssp EEEEECT-TSCEEEEET-TTEEEEECSSSSSSCTT-----S-----CCEEECSSCEEEEEECTTSSCEEEEE--SSEEEE
T ss_pred EEEEeec-cceeecccc-eeeEEEeccCCcccccc-----c-----cccccccccccccccccccccccccc--cccccc
Confidence 4677876 677776654 56787777654321100 0 00011124678899999998555444 456777
Q ss_pred EECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccCC
Q 001380 684 IDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNLN 763 (1089)
Q Consensus 684 ~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~~ 763 (1089)
++. +....... -.....++++|+++.+++. ...+.|..||..++....+...+
T Consensus 125 ~~~--~~~~~~~~------------------~~~~~~~~~s~~~~~l~~g-~~dg~i~~~d~~~~~~~~~~~~~------ 177 (299)
T d1nr0a2 125 YSH--GKLTEVPI------------------SYNSSCVALSNDKQFVAVG-GQDSKVHVYKLSGASVSEVKTIV------ 177 (299)
T ss_dssp EET--TEEEEEEC------------------SSCEEEEEECTTSCEEEEE-ETTSEEEEEEEETTEEEEEEEEE------
T ss_pred ccc--cccccccc------------------ccccccccccccccccccc-ccccccccccccccccccccccc------
Confidence 773 33333321 0145678899988655554 45678888988777665443211
Q ss_pred CCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEE
Q 001380 764 GSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVY 843 (1089)
Q Consensus 764 g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva 843 (1089)
.-.....++++++++.|+.+ ..++.|+.++..++....... .+.. .-....+++
T Consensus 178 -------~~~~i~~~~~~~~~~~l~~~-~~d~~i~~~~~~~~~~~~~~~----------~~~~--------h~~~v~~l~ 231 (299)
T d1nr0a2 178 -------HPAEITSVAFSNNGAFLVAT-DQSRKVIPYSVANNFELAHTN----------SWTF--------HTAKVACVS 231 (299)
T ss_dssp -------CSSCEEEEEECTTSSEEEEE-ETTSCEEEEEGGGTTEESCCC----------CCCC--------CSSCEEEEE
T ss_pred -------cccccccccccccccccccc-ccccccccccccccccccccc----------cccc--------ccccccccc
Confidence 01235789999998665554 456889999987544321100 0000 011346789
Q ss_pred EccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCC
Q 001380 844 CAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLN 921 (1089)
Q Consensus 844 ~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~ 921 (1089)
++++|+++++-...+.|+.+|..++....+..... .-..+...+..++++.+++-..++.|+..++.
T Consensus 232 ~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGA-----------HAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTS-----------STTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred ccccccceEEEcCCCEEEEEECCCCCcceEEEecC-----------CCCCcEEEEEECCCCEEEEEeCCCEEEEEecc
Confidence 99999888887788899999976543222111100 01112222333455666666677889988863
|
| >d1s2oa1 c.108.1.10 (A:1-244) Sucrose-phosphatase Slr0953 {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Predicted hydrolases Cof domain: Sucrose-phosphatase Slr0953 species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=97.85 E-value=2.1e-05 Score=81.30 Aligned_cols=39 Identities=10% Similarity=0.037 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcC
Q 001380 221 LKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQ 259 (1089)
Q Consensus 221 ~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG 259 (1089)
+.-|...++.+++++|+++++++++||+.||+.|.+.+|
T Consensus 160 ~~~K~~a~~~l~~~~gi~~~~~v~~GD~~ND~~Ml~~~~ 198 (244)
T d1s2oa1 160 RSNKGNATQYLQQHLAMEPSQTLVCGDSGNDIGLFETSA 198 (244)
T ss_dssp TCSHHHHHHHHHHHTTCCGGGEEEEECSGGGHHHHTSSS
T ss_pred ccchhHHHHHHHHhccCChhhEEEEcCCCCCHHHHhhCC
Confidence 445677899999999999999999999999999999999
|
| >d2b8ea1 c.108.1.7 (A:416-434,A:548-663) Cation-transporting ATPase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Meta-cation ATPase, catalytic domain P domain: Cation-transporting ATPase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.85 E-value=4.1e-05 Score=70.75 Aligned_cols=104 Identities=13% Similarity=0.131 Sum_probs=73.6
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEE
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIV 244 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~ 244 (1089)
.+.|++.+.++.|++.|++++++|+...+....+.+++|++ .+++. -.|+-....++++.-. ..++|
T Consensus 21 ~lr~~a~~~I~~L~~~Gi~v~ilTGD~~~~a~~ia~~lgI~-----~v~~~-------~~p~~k~~~v~~~q~~-~~v~~ 87 (135)
T d2b8ea1 21 TLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLD-----LVIAE-------VLPHQKSEEVKKLQAK-EVVAF 87 (135)
T ss_dssp CBCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCS-----EEECS-------CCHHHHHHHHHHHTTT-SCEEE
T ss_pred CCCccHHHHHHHHHHcCCEEEEEcCcchhhhhHHHhhhhhh-----hhccc-------cchhHHHHHHHHHHcC-CEEEE
Confidence 68899999999999999999999999999999999999996 33322 2234444555555543 57999
Q ss_pred EcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecC
Q 001380 245 IEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKE 285 (1089)
Q Consensus 245 VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~d 285 (1089)
|||+.||..+.+.+++. +..+.. .+.....+|+++.+
T Consensus 88 vGDg~nD~~aL~~Advg---ia~~~~-~~~~~~aADivl~~ 124 (135)
T d2b8ea1 88 VGDGINDAPALAQADLG---IAVGSG-SDVAVESGDIVLIR 124 (135)
T ss_dssp EECSSSSHHHHHHSSEE---EEECCC---------SEEESS
T ss_pred EeCCCCcHHHHHhCCee---eecCcc-CHHHHHhCCEEEEC
Confidence 99999999999999843 333322 23334467777644
|
| >d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.79 E-value=3.3e-05 Score=73.84 Aligned_cols=113 Identities=18% Similarity=0.206 Sum_probs=73.2
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCC-hhcHHHHHHHH-----------HHcCCccc-
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDN-EKDLEAIRNAV-----------LRYGISHP- 518 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~-~~~~~~~~~~~-----------~~~~~~~~- 518 (1089)
.+|.+|+.|.-+-||+|++..|.+.++.+. ++.++-+..+-... ........... ...+....
T Consensus 25 ~ak~tIv~FsD~~CpyC~~~~~~l~~~~~~----~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 100 (156)
T d1eeja1 25 QEKHVITVFTDITCGYCHKLHEQMADYNAL----GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAP 100 (156)
T ss_dssp TCCEEEEEEECTTCHHHHHHHTTHHHHHHT----TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCC
T ss_pred CCCEEEEEEeCCCCHHHHHHHHHHHHhhcc----CceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccccch
Confidence 578999999999999999999999998653 45555555432111 11111111110 11121111
Q ss_pred ----eeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHHhc
Q 001380 519 ----VVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFYG 573 (1089)
Q Consensus 519 ----v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~~~ 573 (1089)
...+.+.++++.+||+++|++|+ .||+++ .|....+.+.++|++.++...
T Consensus 101 ~~~~~~i~~~~~la~~lgv~GTPt~~~--~nG~~v---~G~~~~e~l~~~i~~~~k~~~ 154 (156)
T d1eeja1 101 ASCDVDIADHYALGVQLGVSGTPAVVL--SNGTLV---PGYQPPKEMKEFLDEHQKMTS 154 (156)
T ss_dssp CCCSCCHHHHHHHHHHHTCCSSSEEEC--TTSCEE---ESCCCHHHHHHHHHHHHHHHH
T ss_pred hhhcchHHHHHHHHHHcCCcCCCEEEE--eCCeEe---cCCCCHHHHHHHHHHHHHHhc
Confidence 01123567899999999999665 457754 588899999999999887654
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.73 E-value=0.0039 Score=64.48 Aligned_cols=245 Identities=11% Similarity=0.092 Sum_probs=137.8
Q ss_pred ceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEE
Q 001380 604 GKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALR 682 (1089)
Q Consensus 604 ~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~ 682 (1089)
..+++++ ++.++++....+.+..++.. .+....+... ......+.+.++++.++.+ ..++.++
T Consensus 63 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~-~~d~~~~ 126 (317)
T d1vyhc1 63 QDISFDH-SGKLLASCSADMTIKLWDFQGFECIRTMHGH--------------DHNVSSVSIMPNGDHIVSA-SRDKTIK 126 (317)
T ss_dssp EEEEECT-TSSEEEEEETTSCCCEEETTSSCEEECCCCC--------------SSCEEEEEECSSSSEEEEE-ETTSEEE
T ss_pred EEEeeec-ccccccccccccccccccccccccccccccc--------------cccceeeeccCCCceEEee-ccCccee
Confidence 4567776 55555555555566666554 3332222111 2245678888888855444 4678899
Q ss_pred EEECCCCeE-EEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEE-EEeCCCccc
Q 001380 683 EIDFVNDTV-RTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTR-AFSGDGYER 760 (1089)
Q Consensus 683 ~~d~~~g~v-~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~-~~~g~g~~~ 760 (1089)
.++..++.. .++.+.. .....+++++++..| ++....+.|..++...+... .+.+.....
T Consensus 127 ~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i 188 (317)
T d1vyhc1 127 MWEVQTGYCVKTFTGHR-----------------EWVRMVRPNQDGTLI-ASCSNDQTVRVWVVATKECKAELREHRHVV 188 (317)
T ss_dssp EEETTTCCEEEEEECCS-----------------SCEEEEEECTTSSEE-EEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred EeecccceeeeEEccCC-----------------CcceeeecccCCCEE-EEEeCCCeEEEEeeccceeeEEEecCCCCc
Confidence 999877654 3443211 245678899988554 44445677888887766543 232211100
Q ss_pred c-----CCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeE-EEecCCCCCCCCccccCCCCCccccc
Q 001380 761 N-----LNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR-LLAGGDPIFPDNLFKFGDRDGMGSEV 834 (1089)
Q Consensus 761 ~-----~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~-~~~g~~~~~~~~l~~~g~~dg~~~~~ 834 (1089)
. .++...................+ .++++-+..+.|+.++..++... .+.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~~--------------------- 246 (317)
T d1vyhc1 189 ECISWAPESSYSSISEATGSETKKSGKPG-PFLLSGSRDKTIKMWDVSTGMCLMTLVGH--------------------- 246 (317)
T ss_dssp EEEEECCSCGGGGGGGCCSCC-------C-CEEEEEETTSEEEEEETTTTEEEEEEECC---------------------
T ss_pred eEEEEeeccccceeeccccceeeeeccCC-ceeEeccCCCEEEEEECCCCcEEEEEeCC---------------------
Confidence 0 00000000001111122222334 44555556788888888765432 22211
Q ss_pred cccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCe-EEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCC
Q 001380 835 LLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNR-VSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNN 913 (1089)
Q Consensus 835 ~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~-v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~ 913 (1089)
-....++++.++|+++++-..++.|+.+|..++. +.++.+. -....++++.++|+++++-..++
T Consensus 247 -~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h--------------~~~V~~~~~s~~~~~l~s~s~Dg 311 (317)
T d1vyhc1 247 -DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH--------------EHFVTSLDFHKTAPYVVTGSVDQ 311 (317)
T ss_dssp -SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC--------------SSCEEEEEECSSSSCEEEEETTS
T ss_pred -CCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCC--------------CCCEEEEEEcCCCCEEEEEeCCC
Confidence 1134678999999877777788999999986554 4555432 12356788988888777777778
Q ss_pred EEEEEe
Q 001380 914 IIRYLD 919 (1089)
Q Consensus 914 ~I~~~~ 919 (1089)
.|++++
T Consensus 312 ~i~iWd 317 (317)
T d1vyhc1 312 TVKVWE 317 (317)
T ss_dssp EEEEEC
T ss_pred eEEEeC
Confidence 888764
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.63 E-value=0.0048 Score=63.49 Aligned_cols=119 Identities=13% Similarity=0.065 Sum_probs=75.1
Q ss_pred eEEeeC--CCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC---
Q 001380 662 LAYNAK--KNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG--- 736 (1089)
Q Consensus 662 la~d~~--g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~--- 736 (1089)
+.++|+ |+.|.++. .+.|+.+|++++..+.+.... ..-.+.+|+|+|..|+++...
T Consensus 4 ~~~sPdi~G~~v~f~~--~~dl~~~d~~~g~~~~Lt~~~-----------------~~~~~p~~SPDG~~iaf~~~~~~~ 64 (281)
T d1k32a2 4 LLLNPDIHGDRIIFVC--CDDLWEHDLKSGSTRKIVSNL-----------------GVINNARFFPDGRKIAIRVMRGSS 64 (281)
T ss_dssp CCEEEEEETTEEEEEE--TTEEEEEETTTCCEEEEECSS-----------------SEEEEEEECTTSSEEEEEEEESTT
T ss_pred cccCCCCCCCEEEEEe--CCcEEEEECCCCCEEEEecCC-----------------CcccCEEECCCCCEEEEEEeeCCC
Confidence 345677 77666654 346888898888888775321 123467899999988776421
Q ss_pred --CcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCC-----eEEEEEcCCCCe
Q 001380 737 --QHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESS-----SIRALNLKTGGS 807 (1089)
Q Consensus 737 --~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~-----~I~~~~~~~~~~ 807 (1089)
..+|+.++..++....+...+... ..........+++++|+.|+++..... .+..++.+++..
T Consensus 65 ~~~~~i~~~~~~~g~~~~lt~~~~~~--------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (281)
T d1k32a2 65 LNTADLYFYNGENGEIKRITYFSGKS--------TGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINF 134 (281)
T ss_dssp CCEEEEEEEETTTTEEEECCCCCEEE--------ETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEE
T ss_pred CCceEEEEEEecCCceEEeeecCCCc--------cCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCcee
Confidence 246999999999887764322100 011223567889999988888765432 345555554433
|
| >d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Thiol:disulfide interchange protein DsbG, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.59 E-value=0.00029 Score=67.94 Aligned_cols=111 Identities=15% Similarity=0.144 Sum_probs=73.4
Q ss_pred ccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHH------------HHHHHHHcCCcc
Q 001380 450 DLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEA------------IRNAVLRYGISH 517 (1089)
Q Consensus 450 ~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~------------~~~~~~~~~~~~ 517 (1089)
.-..+++|+.|+-+-||+|++.++.++++.+++ .+.++-+.++-... +.... ..++....+...
T Consensus 33 ~~~a~~tv~vF~D~~CP~C~~~~~~l~~l~~~~---~v~v~~~~~~~~~~-~s~~~a~a~~~a~~~~~~~~~~~~~~~~~ 108 (169)
T d1v58a1 33 KKDAPVIVYVFADPFCPYCKQFWQQARPWVDSG---KVQLRTLLVGVIKP-ESPATAAAILASKDPAKTWQQYEASGGKL 108 (169)
T ss_dssp CTTCSEEEEEEECTTCHHHHHHHHHHHHHHHTT---SEEEEEEECCCSST-THHHHHHHHHHSSSHHHHHHHHHHTTTCC
T ss_pred CCCCCEEEEEEECCCCcchHHHHHHHHHHHhcc---ceeEEEEecccCCc-chHHHHHHHHhhhCHHHHHHHHHHhhhcc
Confidence 334578899999999999999999999988764 36666665543322 22222 122222222221
Q ss_pred c----e-e-------ecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHH
Q 001380 518 P----V-V-------NDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLV 565 (1089)
Q Consensus 518 ~----v-~-------~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l 565 (1089)
. . . .+.+.++++.+||.++|++|+.|++|++ ....|....+.|++++
T Consensus 109 ~~~~~~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~~-~~~~G~~~~~~l~~il 167 (169)
T d1v58a1 109 KLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL-QQAVGLPDQKTLNIIM 167 (169)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE-EEEESSCCHHHHHHHT
T ss_pred cccccchhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCE-EEecCCCCHHHHHHHh
Confidence 1 1 1 1224568889999999999999999976 4578888887776654
|
| >d2bdea1 c.108.1.23 (A:2-459) Cytosolic IMP-GMP specific 5'-nucleotidase {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: 5' nucleotidase-like domain: Cytosolic IMP-GMP specific 5'-nucleotidase species: Legionella pneumophila [TaxId: 446]
Probab=97.57 E-value=0.00022 Score=78.49 Aligned_cols=101 Identities=15% Similarity=0.132 Sum_probs=76.5
Q ss_pred CccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHC---------CCCCCCccEEEEcCC-----------------cc-
Q 001380 167 FPGALELINQCKSKGLKVAVASSADRIKVDANLAAA---------GLPVSMFDAIVSADA-----------------FE- 219 (1089)
Q Consensus 167 ~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~---------gl~~~~fd~i~~~~~-----------------~~- 219 (1089)
-|.+..+|..||+.|.+++++||..-..++..+..+ .+ .++||.|++... .+
T Consensus 187 ~~~l~~~L~~lr~~GKklFLiTNS~~~y~~~~m~y~~~~~~~~g~dW-r~lFDvVIv~A~KP~FF~~~~~~~~v~~~~g~ 265 (458)
T d2bdea1 187 EKEVVEGLKHFIRYGKKIFILTNSEYSYSKLLLDYALSPFLDKGEHW-QGLFEFVITLANKPRFFYDNLRFLSVNPENGT 265 (458)
T ss_dssp CHHHHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHGGGSCTTCCG-GGTEEEEEESCCHHHHHHSCCCEEEECTTTCC
T ss_pred ChhHHHHHHHHHHcCCeEEEEecCcHHHHHHHhhhhcccCCCCCCCh-HHhceEEEeCCCCCCccCCCCcceEEeCCCCc
Confidence 577889999999999999999999888877766643 33 589999988631 00
Q ss_pred ------CCCCC---HHHHHHHHHHcCCCCCcEEEEcCCh-hhHHHHH-HcCCeEEEEcCC
Q 001380 220 ------NLKPA---PDIFLSASKILNVPTSECIVIEDAL-AGVQAAK-AAQMRCIAVTTT 268 (1089)
Q Consensus 220 ------~~KP~---~~~~~~~l~~lgv~p~~~v~VGD~~-~Di~aA~-~aG~~~i~V~~g 268 (1089)
..||. ..-.....+.+|..-.++++|||.. .||..++ ..||+|++|..-
T Consensus 266 l~~~~~~~~~~vY~gGn~~~l~~llg~~g~~VLY~GDhi~~Di~~~kk~~gWrT~~Ii~E 325 (458)
T d2bdea1 266 MTNVHGPIVPGVYQGGNAKKFTEDLGVGGDEILYIGDHIYGDILRLKKDCNWRTALVVEE 325 (458)
T ss_dssp EEECCSCCCSEEEEECCHHHHHHHTTCCGGGEEEEESSCCSCHHHHHHHHCSEEEEECTT
T ss_pred cccCCccccCCccccCCHHHHHHHhCCCCCcEEEECCccchhhhhhhhhcCCceEEehHH
Confidence 00111 1115666777899889999999999 9988775 579999999764
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=97.55 E-value=0.026 Score=60.13 Aligned_cols=206 Identities=16% Similarity=0.295 Sum_probs=115.3
Q ss_pred CCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCC---cceeEEeeCC-CEEEEEECCC--CEE--EE
Q 001380 612 NNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNR---PQGLAYNAKK-NLLYVADTEN--HAL--RE 683 (1089)
Q Consensus 612 ~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~---P~gla~d~~g-~~lyVaD~~n--~~I--~~ 683 (1089)
...++-+|-.. -|++++++|+.+..+..+ . +|+ -.++.+...+ ..+++++..+ .+| +.
T Consensus 40 ~SlI~gTdK~~-Gl~vYdL~G~~l~~~~~G-r------------~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~ 105 (353)
T d1h6la_ 40 NSKLITTNKKS-GLAVYSLEGKMLHSYHTG-K------------LNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYA 105 (353)
T ss_dssp GCEEEEEETTS-CCEEEETTCCEEEECCSS-C------------EEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEE
T ss_pred ccEEEEEcCcC-CEEEEcCCCcEEEecccC-C------------cCccccccccccCCcceEEEEEeCCcCcceeEEEEE
Confidence 34455566544 499999999998775432 1 111 1233332222 2345566543 344 56
Q ss_pred EECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEE--ecCCCEEE-EEECCCcEEEE--EEC-CCCeE-----EE
Q 001380 684 IDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCY--KPINEKVY-IAMAGQHQIWE--HST-VDGVT-----RA 752 (1089)
Q Consensus 684 ~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~--~~~g~~ly-vad~~~~~I~~--~~~-~~g~~-----~~ 752 (1089)
++..++.+..+...... ....+..++|+|+ ++.++.+| +.....+.++. +.. ..+.+ +.
T Consensus 106 id~~~~~l~~~~~~~~p----------~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~ 175 (353)
T d1h6la_ 106 IDGKNGTLQSITDPNRP----------IASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRA 175 (353)
T ss_dssp EETTTTEEEECSCSSSC----------EECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEE
T ss_pred ecCcccccccccccccc----------cccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeec
Confidence 67667777666432111 1223457999999 56655444 33333445443 322 22322 22
Q ss_pred EeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCC--CCeEEEecCCCCCCCCccccCCCCCc
Q 001380 753 FSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKT--GGSRLLAGGDPIFPDNLFKFGDRDGM 830 (1089)
Q Consensus 753 ~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~--~~~~~~~g~~~~~~~~l~~~g~~dg~ 830 (1089)
|.- -.++.|+++|.+.+.|||++.+ -.|++++.+. +....+... .+|
T Consensus 176 f~~----------------~~q~EGCVvDde~~~LyisEE~-~Giw~~~a~~~~~~~~~~i~~-------------~~g- 224 (353)
T d1h6la_ 176 FKM----------------NSQTEGMAADDEYGSLYIAEED-EAIWKFSAEPDGGSNGTVIDR-------------ADG- 224 (353)
T ss_dssp EEC----------------SSCEEEEEEETTTTEEEEEETT-TEEEEEESSTTSCSCCEEEEE-------------CSS-
T ss_pred cCC----------------CCccceEEEeCCCCcEEEecCc-cceEEEEeccCCCccceeeec-------------ccC-
Confidence 221 1368899999998899999865 5688887542 111111100 000
Q ss_pred cccccccCceEEEEc----cCCcEEEEeCCCCEEEEEeCCC--CeEEEEe
Q 001380 831 GSEVLLQHPLGVYCA----KNGQIYVADSYNHKIKKLDPAS--NRVSTLA 874 (1089)
Q Consensus 831 ~~~~~l~~P~gva~~----~~G~lyVaD~~n~~I~~~d~~~--~~v~t~~ 874 (1089)
.....-|.||++- .+|.|.+++-++++..+||..+ ..+..+.
T Consensus 225 --~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~ 272 (353)
T d1h6la_ 225 --RHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQ 272 (353)
T ss_dssp --SSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred --ccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEE
Confidence 0013358888863 3568999999999999999865 3555543
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.51 E-value=0.022 Score=59.53 Aligned_cols=220 Identities=13% Similarity=0.131 Sum_probs=126.2
Q ss_pred CcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEE-EEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC
Q 001380 658 RPQGLAYNAKKNLLYVADTENHALREIDFVNDTVR-TLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG 736 (1089)
Q Consensus 658 ~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~-~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~ 736 (1089)
.-..|+++|+++.|. +-..++.|+.+|..++... ++.+.. .....++++|++..++.+..
T Consensus 57 ~I~~l~~s~~~~~l~-sgs~Dg~v~iWd~~~~~~~~~~~~~~-----------------~~v~~v~~~~~~~~l~~~~~- 117 (340)
T d1tbga_ 57 KIYAMHWGTDSRLLV-SASQDGKLIIWDSYTTNKVHAIPLRS-----------------SWVMTCAYAPSGNYVACGGL- 117 (340)
T ss_dssp CEEEEEECTTSSEEE-EEETTTEEEEEETTTTEEEEEEECSC-----------------SCEEEEEECTTSSEEEEEET-
T ss_pred CEEEEEECCCCCEEE-EEECCCceeeeecccceeEEEEeccc-----------------ccEEeeEeeccceeeeeecc-
Confidence 347899999999544 4446789999999877644 333211 14578999998866665543
Q ss_pred CcEEEEEECCCCe-----EEEEeCCCcc---------------------ccCCC-CCC-C---CccccCCceEEEcCCCC
Q 001380 737 QHQIWEHSTVDGV-----TRAFSGDGYE---------------------RNLNG-SSS-L---NTSFAQPSGISLSPDFM 785 (1089)
Q Consensus 737 ~~~I~~~~~~~g~-----~~~~~g~g~~---------------------~~~~g-~~~-~---~~~~~~P~glav~~~g~ 785 (1089)
.+.+..++..... ...+.+.... ..... ... . ......-......+.+
T Consensus 118 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 196 (340)
T d1tbga_ 118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT- 196 (340)
T ss_dssp TCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTS-
T ss_pred cceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeecccccc-
Confidence 4555555533221 1111110000 00000 000 0 0000011233344444
Q ss_pred EEEEEeCCCCeEEEEEcCCCCeEE-EecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEe
Q 001380 786 EIYVADSESSSIRALNLKTGGSRL-LAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLD 864 (1089)
Q Consensus 786 ~lyvad~~~~~I~~~~~~~~~~~~-~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d 864 (1089)
.++++....+.|+.++..++.... +.+. -....+++++++|+++++-+.++.|+.+|
T Consensus 197 ~~~~~~~~d~~v~i~d~~~~~~~~~~~~h----------------------~~~i~~v~~~p~~~~l~s~s~d~~i~~~~ 254 (340)
T d1tbga_ 197 RLFVSGACDASAKLWDVREGMCRQTFTGH----------------------ESDINAICFFPNGNAFATGSDDATCRLFD 254 (340)
T ss_dssp SEEEEEETTTEEEEEETTTTEEEEEECCC----------------------SSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ceeEEeecCceEEEEECCCCcEEEEEeCC----------------------CCCeEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 556666666778888776554322 2110 11346789999998888877889999999
Q ss_pred CCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCCCceEEEEe
Q 001380 865 PASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKEEPELQTLE 931 (1089)
Q Consensus 865 ~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~~~~~~~l~ 931 (1089)
.............. .......++++++|+++++...++.|+.+++.... .+.++.
T Consensus 255 ~~~~~~~~~~~~~~-----------~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~ 309 (340)
T d1tbga_ 255 LRADQELMTYSHDN-----------IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD-RAGVLA 309 (340)
T ss_dssp TTTTEEEEEECCTT-----------CCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCC-EEEEEC
T ss_pred eccccccccccccc-----------ccCceEEEEECCCCCEEEEEECCCEEEEEECCCCc-EEEEEc
Confidence 87665543322110 12234678889999888888888999999987762 444443
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.40 E-value=0.037 Score=57.79 Aligned_cols=248 Identities=12% Similarity=0.121 Sum_probs=136.1
Q ss_pred EEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEE
Q 001380 607 AIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREID 685 (1089)
Q Consensus 607 avd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d 685 (1089)
++++ +++++++-...+.|.++|.. ++.+.++.+. . .....|++.++ +.| ++-..++.|+.++
T Consensus 18 c~~~-~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H-~-------------~~V~~l~~s~~-~~l-~s~s~D~~i~iw~ 80 (355)
T d1nexb2 18 CLQF-EDNYVITGADDKMIRVYDSINKKFLLQLSGH-D-------------GGVWALKYAHG-GIL-VSGSTDRTVRVWD 80 (355)
T ss_dssp EEEE-ETTEEEEEETTTEEEEEETTTTEEEEEEECC-S-------------SCEEEEEEETT-TEE-EEEETTCCEEEEE
T ss_pred EEEE-CCCEEEEEeCCCeEEEEECCCCcEEEEEECC-C-------------CCEEEEEEcCC-CEE-EEEeccccccccc
Confidence 4555 45566666678999999986 7777776543 1 13578999875 434 4444678899999
Q ss_pred CCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCccccC---
Q 001380 686 FVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERNL--- 762 (1089)
Q Consensus 686 ~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~~--- 762 (1089)
................ ..-......+++ ..+++....+.|..|+...+......+.......
T Consensus 81 ~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~-~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 145 (355)
T d1nexb2 81 IKKGCCTHVFEGHNST--------------VRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 145 (355)
T ss_dssp TTTTEEEEEECCCSSC--------------EEEEEEEEETTE-EEEEEEETTSEEEEEECCC-----------CCCEEES
T ss_pred cccccccccccccccc--------------cccccccccccc-ceeeeecCCCcEEEEEccCCceeccccccceecccee
Confidence 8877655544221100 011233445544 5555555677888888766543322211100000
Q ss_pred --CCCCC-CCccccCC-ceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccC
Q 001380 763 --NGSSS-LNTSFAQP-SGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQH 838 (1089)
Q Consensus 763 --~g~~~-~~~~~~~P-~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~ 838 (1089)
..... ........ .-.+..+++ .+.+.....+.|+.++..++.......+ ....
T Consensus 146 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~d~~i~~~d~~~~~~~~~~~~---------------------~~~~ 203 (355)
T d1nexb2 146 TPEENPYFVGVLRGHMASVRTVSGHG-NIVVSGSYDNTLIVWDVAQMKCLYILSG---------------------HTDR 203 (355)
T ss_dssp CTTTCTTEEEEEECCSSCEEEEEEET-TEEEEEETTSCEEEEETTTTEEEEEECC---------------------CSSC
T ss_pred ccccccceeeeeeecccccccccccc-ceeeeecccceeeeeecccccceeeeec---------------------cccc
Confidence 00000 00000001 112334455 4445555567888888775543322111 0123
Q ss_pred ceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEE
Q 001380 839 PLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYL 918 (1089)
Q Consensus 839 P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~ 918 (1089)
...+.+++++..+++...++.|+.+|..++....... + .-.....++++ ++.+++-..++.|+.+
T Consensus 204 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~------------h~~~v~~~~~~--~~~l~~~~~dg~i~iw 268 (355)
T d1nexb2 204 IYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ-G------------HTALVGLLRLS--DKFLVSAAADGSIRGW 268 (355)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEEC-C------------CSSCCCEEEEC--SSEEEEECTTSEEEEE
T ss_pred cccccccccceeeecccccceEEeeeccccccccccc-c------------ccccccccccc--cceeeeeecccccccc
Confidence 4567888888888887788999999987765544321 1 11223455654 4677777888999999
Q ss_pred eCCCC
Q 001380 919 DLNKE 923 (1089)
Q Consensus 919 ~~~~~ 923 (1089)
+++..
T Consensus 269 d~~~~ 273 (355)
T d1nexb2 269 DANDY 273 (355)
T ss_dssp ETTTC
T ss_pred ccccc
Confidence 99876
|
| >d1q92a_ c.108.1.8 (A:) 5'(3')-deoxyribonucleotidase (dNT-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: 5'(3')-deoxyribonucleotidase (dNT-2) domain: 5'(3')-deoxyribonucleotidase (dNT-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.39 E-value=0.00028 Score=69.93 Aligned_cols=111 Identities=16% Similarity=0.139 Sum_probs=69.3
Q ss_pred CCCCccHHHHHHHHHhCC-CeEEEEcCCChH------hHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcC
Q 001380 164 GIGFPGALELINQCKSKG-LKVAVASSADRI------KVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILN 236 (1089)
Q Consensus 164 ~~~~pG~~~lL~~Lk~~G-i~vaIvSn~~~~------~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lg 236 (1089)
.+++||+.+++..|++.| +.+.++|..... .....|++......+...+++.+ |- .+.
T Consensus 73 L~p~~gA~e~l~~L~~~~~~~v~i~t~~~~~~~~~~~~k~~Wl~~~~~~~~~~~~~~t~~-----K~----------~~~ 137 (195)
T d1q92a_ 73 LEPLPGAVEAVKEMASLQNTDVFICTSPIKMFKYCPYEKYAWVEKYFGPDFLEQIVLTRD-----KT----------VVS 137 (195)
T ss_dssp CCBCTTHHHHHHHHHHSTTEEEEEEECCCSCCSSHHHHHHHHHHHHHCGGGGGGEEECSC-----ST----------TSC
T ss_pred CCcccCHHHHHHHHhhccCccceEEccccccCcchHHHHHHHHHHhcCCCCccEEEEccc-----cc----------eec
Confidence 478999999999999865 568888875321 23345665532213334555432 21 112
Q ss_pred CCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHH
Q 001380 237 VPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDIL 295 (1089)
Q Consensus 237 v~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll 295 (1089)
. -++|.|++..++++.++|+.+|++.....+.. .....-.-+.+..|+ ...+|
T Consensus 138 ~----d~lIDD~p~n~~~~~~~g~~~il~~~~~N~~~-~~~~~~~Rv~~W~e~-~~~il 190 (195)
T d1q92a_ 138 A----DLLIDDRPDITGAEPTPSWEHVLFTACHNQHL-QLQPPRRRLHSWADD-WKAIL 190 (195)
T ss_dssp C----SEEEESCSCCCCSCSSCSSEEEEECCTTTTTC-CCCTTCEEECCTTSC-HHHHH
T ss_pred C----eEEecCcHHHHHHHhcCCCeEEEECCCcccCC-CCCCCceeeCCHHHH-HHHHH
Confidence 2 28999999999999999999999987653321 101123556777776 34444
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.38 E-value=0.058 Score=54.60 Aligned_cols=225 Identities=16% Similarity=0.201 Sum_probs=122.7
Q ss_pred EEEeCCC----CEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC--CCEEEEEECCCC
Q 001380 616 FISDSNH----NRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE--NHALREIDFVND 689 (1089)
Q Consensus 616 ~vsd~~~----~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~--n~~I~~~d~~~g 689 (1089)
||++.+. .+|++.|.+|.....+-.... .-...+++|+|+.|.++... +..+...+..++
T Consensus 8 y~~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~--------------~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~ 73 (269)
T d2hqsa1 8 YVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQ--------------PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG 73 (269)
T ss_dssp EEEECSSSSCCEEEEEEETTSCSCEEEEEESS--------------CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred EEEEeCCCCceEEEEEEcCCCCCcEEEecCCC--------------ceeeeEECCCCCEEEEEEeeccCcceeeeecccC
Confidence 4555532 257777778765554422211 11355899999888665433 347888888888
Q ss_pred eEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCc--EEEEEECCCCeEEEEeCCCccccCCCCCC
Q 001380 690 TVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQH--QIWEHSTVDGVTRAFSGDGYERNLNGSSS 767 (1089)
Q Consensus 690 ~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~--~I~~~~~~~g~~~~~~g~g~~~~~~g~~~ 767 (1089)
....+.... .......++|+|..+++.....+ .+..+............
T Consensus 74 ~~~~~~~~~-----------------~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 124 (269)
T d2hqsa1 74 AVRQVASFP-----------------RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD------------ 124 (269)
T ss_dssp CEEEEECCS-----------------SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCC------------
T ss_pred ceeEEeeee-----------------cccccceecCCCCeeeEeeecCCccceeecccccccceeeee------------
Confidence 877776322 14567788999987777654432 33333322222111110
Q ss_pred CCccccCCceEEEcCCCCEEEEEeCC--CCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEc
Q 001380 768 LNTSFAQPSGISLSPDFMEIYVADSE--SSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCA 845 (1089)
Q Consensus 768 ~~~~~~~P~glav~~~g~~lyvad~~--~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~ 845 (1089)
............+++.++++... ...|...+.+++....+... ........+.
T Consensus 125 ---~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~----------------------~~~~~~~~~s 179 (269)
T d2hqsa1 125 ---GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWE----------------------GSQNQDADVS 179 (269)
T ss_dssp ---CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCS----------------------SSEEEEEEEC
T ss_pred ---ccccccccccccccccceecccccCCceEeeeecccccceeeecc----------------------cccccccccc
Confidence 01112233445555556555433 33677777765544333211 0122345677
Q ss_pred cCCc--EEEEe-CCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCc-E-EEEEC-CCCEEEEEe
Q 001380 846 KNGQ--IYVAD-SYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGN-L-FIADT-NNNIIRYLD 919 (1089)
Q Consensus 846 ~~G~--lyVaD-~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~-l-yVad~-~n~~I~~~~ 919 (1089)
++|+ +|+.. .....|..++..++........+. -...++.+||+ | |+++. ++..|.+++
T Consensus 180 pdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---------------~~~p~~SPDG~~i~f~s~~~~~~~l~~~~ 244 (269)
T d2hqsa1 180 SDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFL---------------DETPSLAPNGTMVIYSSSQGMGSVLNLVS 244 (269)
T ss_dssp TTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSS---------------CEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred cccceeEEEeecCCceeeeEeecccccceEeecCcc---------------ccceEECCCCCEEEEEEcCCCCcEEEEEE
Confidence 8885 33332 234567788887777655543211 12346888886 3 55443 346788888
Q ss_pred CCCC
Q 001380 920 LNKE 923 (1089)
Q Consensus 920 ~~~~ 923 (1089)
+++.
T Consensus 245 ~dg~ 248 (269)
T d2hqsa1 245 TDGR 248 (269)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 8886
|
| >d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Vibrio cholerae [TaxId: 666]
Probab=97.34 E-value=0.00035 Score=68.01 Aligned_cols=117 Identities=21% Similarity=0.306 Sum_probs=74.6
Q ss_pred cccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChh---------------------------
Q 001380 449 RDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEK--------------------------- 501 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~--------------------------- 501 (1089)
.-..++++|+.|+..-||+|++..+.+.++.+++.+. +.++-++++ +....
T Consensus 14 ~p~~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (181)
T d1beda_ 14 TPASSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEG-AKFQKNHVS-FMGGNMGQAMSKAYATMIALEVEDKMVPVMFN 91 (181)
T ss_dssp SCCCSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTT-CEEEEEECS-SSSGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCccchhhhhhhhhHhhhcccc-cceeEEecc-ccccccHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 3346788999999999999999999999999998764 334333332 11111
Q ss_pred ----------cHHHHHHHHHHcCCccc----eee--------cCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchh
Q 001380 502 ----------DLEAIRNAVLRYGISHP----VVN--------DGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRK 559 (1089)
Q Consensus 502 ----------~~~~~~~~~~~~~~~~~----v~~--------d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~ 559 (1089)
+.+.+.+++...|++-. .+. ..+.+.++.+||.++|+++| +|+.+....+..+.+
T Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~gvd~~~~~~~~~~~~~~~~v~~~~~~~~~~gi~gTPt~~I---nGk~~v~~~~~~~~~ 168 (181)
T d1beda_ 92 RIHTLRKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVRRFDKQFQDSGLTGVPAVVV---NNRYLVQGQSVKSLD 168 (181)
T ss_dssp HHTTSCCCCCSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHTCCSSSEEEE---TTTEEECGGGCCSHH
T ss_pred HHHHhccccchHHHHHHHHHHhcCCHHHHHHHHhChHHHHHHHHHHHHHHHhCCccccEEEE---CCEEeeCCCCCCCHH
Confidence 12222333333343311 010 11235677899999998766 787655556667788
Q ss_pred hHHHHHHHHHH
Q 001380 560 DLDDLVEAALL 570 (1089)
Q Consensus 560 ~l~~~l~~~l~ 570 (1089)
.+.+.|+.++.
T Consensus 169 ~l~~~i~~L~~ 179 (181)
T d1beda_ 169 EYFDLVNYLLT 179 (181)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888887764
|
| >d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.32 E-value=0.00031 Score=66.30 Aligned_cols=107 Identities=19% Similarity=0.196 Sum_probs=66.8
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCC-CChhcHHHHHHHHHH------------cCC-cc
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKF-DNEKDLEAIRNAVLR------------YGI-SH 517 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~-~~~~~~~~~~~~~~~------------~~~-~~ 517 (1089)
.+|.+|+.|.-+-||+|+..++.+.++.+. +..++-+..+-. ............... ... .-
T Consensus 25 ~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~ 100 (150)
T d1t3ba1 25 NEKHVVTVFMDITCHYCHLLHQQLKEYNDL----GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKE 100 (150)
T ss_dssp TCSEEEEEEECTTCHHHHHHHTTHHHHHHT----TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSS
T ss_pred CCCEEEEEEECCCCHHHHHHhHHHHHHhcc----CceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhccccc
Confidence 578899999999999999999999999865 334444432211 111222211111111 111 00
Q ss_pred c---eeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHH
Q 001380 518 P---VVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEA 567 (1089)
Q Consensus 518 ~---v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~ 567 (1089)
. -..+.+.++++.+||+++|++|+. ||++ ..|....+.++++|++
T Consensus 101 ~~~~~~i~~~~~la~~lGv~GTPt~~~~--nG~~---i~G~~~~~~l~~~l~~ 148 (150)
T d1t3ba1 101 VKTPNIVKKHYELGIQFGVRGTPSIVTS--TGEL---IGGYLKPADLLRALEE 148 (150)
T ss_dssp CCCSSHHHHHHHHHHHHTCCSSCEEECT--TSCC---CCSCCCHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHhcCcCCCCEEEEc--CCcE---ecCCCCHHHHHHHHHh
Confidence 0 011235678999999999987764 5764 5788889989888765
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.23 E-value=0.034 Score=58.10 Aligned_cols=214 Identities=16% Similarity=0.185 Sum_probs=117.4
Q ss_pred EEeeCCCEEEEEECCCCEEEEEECCCCeE-EEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEE
Q 001380 663 AYNAKKNLLYVADTENHALREIDFVNDTV-RTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIW 741 (1089)
Q Consensus 663 a~d~~g~~lyVaD~~n~~I~~~d~~~g~v-~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~ 741 (1089)
++.++|++|+ +-..++.|+.+|..++.. .++.+.. ...++|++++++ .| ++....+.|.
T Consensus 18 c~~~~~~~l~-tgs~Dg~i~vWd~~~~~~~~~l~~H~-----------------~~V~~l~~s~~~-~l-~s~s~D~~i~ 77 (355)
T d1nexb2 18 CLQFEDNYVI-TGADDKMIRVYDSINKKFLLQLSGHD-----------------GGVWALKYAHGG-IL-VSGSTDRTVR 77 (355)
T ss_dssp EEEEETTEEE-EEETTTEEEEEETTTTEEEEEEECCS-----------------SCEEEEEEETTT-EE-EEEETTCCEE
T ss_pred EEEECCCEEE-EEeCCCeEEEEECCCCcEEEEEECCC-----------------CCEEEEEEcCCC-EE-EEEecccccc
Confidence 4566788544 445678999999987764 4443211 145789998854 54 4555678888
Q ss_pred EEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCc
Q 001380 742 EHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNL 821 (1089)
Q Consensus 742 ~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l 821 (1089)
.++.............. ....-......+++ ..+++-+..+.|+.++..++......+.........
T Consensus 78 iw~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~-~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 144 (355)
T d1nexb2 78 VWDIKKGCCTHVFEGHN------------STVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF 144 (355)
T ss_dssp EEETTTTEEEEEECCCS------------SCEEEEEEEEETTE-EEEEEEETTSEEEEEECCC-----------CCCEEE
T ss_pred ccccccccccccccccc------------cccccccccccccc-ceeeeecCCCcEEEEEccCCceeccccccceeccce
Confidence 88887776554432110 00011233444555 556666677888888876543322111100000000
Q ss_pred cccCCCCCccccccccCceEE-EEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEc
Q 001380 822 FKFGDRDGMGSEVLLQHPLGV-YCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEA 900 (1089)
Q Consensus 822 ~~~g~~dg~~~~~~l~~P~gv-a~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd 900 (1089)
.. ...........-.+...+ +..++|++.+.....+.|+.+|..++........ .......++++
T Consensus 145 ~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~-------------~~~~~~~~~~~ 210 (355)
T d1nexb2 145 HT-PEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG-------------HTDRIYSTIYD 210 (355)
T ss_dssp SC-TTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC-------------CSSCEEEEEEE
T ss_pred ec-cccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeec-------------ccccccccccc
Confidence 00 000000000111122222 3345778888877888999999876654433211 22335567788
Q ss_pred cCCcEEEEECCCCEEEEEeCCCC
Q 001380 901 QNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 901 ~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
++++.+++...++.|+.++....
T Consensus 211 ~~~~~~~~~~~d~~i~i~d~~~~ 233 (355)
T d1nexb2 211 HERKRCISASMDTTIRIWDLENG 233 (355)
T ss_dssp TTTTEEEEEETTSCEEEEETTTC
T ss_pred ccceeeecccccceEEeeecccc
Confidence 88887777778899999998876
|
| >d1wpga2 c.108.1.7 (A:344-360,A:600-750) Calcium ATPase, catalytic domain P {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Meta-cation ATPase, catalytic domain P domain: Calcium ATPase, catalytic domain P species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=97.22 E-value=0.00047 Score=66.10 Aligned_cols=116 Identities=13% Similarity=0.161 Sum_probs=77.8
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCC----ccEEEEcCCcc----------------CCCCC
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSM----FDAIVSADAFE----------------NLKPA 224 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~----fd~i~~~~~~~----------------~~KP~ 224 (1089)
++.|++.+.++.|++.|+++.++|+.+......+.+++|+. .. .+..+...+.. ...-.
T Consensus 20 p~R~~~~~~I~~l~~~GI~v~miTGD~~~tA~~ia~~~Gi~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~ar~~ 98 (168)
T d1wpga2 20 PPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF-GENEEVADRAYTGREFDDLPLAEQREACRRACCFARVE 98 (168)
T ss_dssp CBCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTSS-CTTCCCTTTEEEHHHHHHSCHHHHHHHHHHCCEEESCC
T ss_pred CCchhHHHHHHHHHHCcCEEEEECCCCHHHHHHHHHHcCCC-CCccccccccccccccchhhHHHHhhhhhhhhhhhccc
Confidence 67899999999999999999999999999999999999994 22 12222221111 11223
Q ss_pred HHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecC
Q 001380 225 PDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKE 285 (1089)
Q Consensus 225 ~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~d 285 (1089)
|+--..+.+.+.-.-..+.||||+.||..+.+.|. ++|..+. ..+.....+|+++.+
T Consensus 99 p~~K~~lv~~l~~~g~~Va~vGDG~nD~~AL~~Ad---vGIa~~~-gt~~a~~aAdivl~~ 155 (168)
T d1wpga2 99 PSHKSKIVEYLQSYDEITAMTGDGVNDAPALKKAE---IGIAMGS-GTAVAKTASEMVLAD 155 (168)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECSGGGHHHHHHSS---EEEEETT-SCHHHHHTCSEEETT
T ss_pred hhHHHHHHHHHHhcccceeEEecCCCCHHHHHhCC---EEEEecc-ccHHHHHhCCEEEcc
Confidence 33333444444333467999999999999999998 4443332 222333357777655
|
| >d1u02a_ c.108.1.15 (A:) Trehalose-6-phosphate phosphatase related protein {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Trehalose-phosphatase domain: Trehalose-6-phosphate phosphatase related protein species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.21 E-value=0.00012 Score=74.24 Aligned_cols=65 Identities=12% Similarity=0.016 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHcCCeEEEEcCCCCHHHHhhcCCcEEecCcccCCHHHHHhcc
Q 001380 221 LKPAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAAQMRCIAVTTTLSEERLKEASPSLIRKEIGSVSLNDILTGG 298 (1089)
Q Consensus 221 ~KP~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~aG~~~i~V~~g~~~~~l~~~~~d~vi~dl~el~i~~ll~~~ 298 (1089)
+--|...++.+++ .+++++|||+.||+.|-+.+|. ++.|..|.. +..|++++++..|+ ..+|+.+
T Consensus 157 g~~Kg~al~~l~~-----~~~~i~~GDs~ND~~Mf~~~~~-~~av~~g~~-----~~~A~~~~~~~~ev--~~~l~~l 221 (229)
T d1u02a_ 157 GVNKGSAIRSVRG-----ERPAIIAGDDATDEAAFEANDD-ALTIKVGEG-----ETHAKFHVADYIEM--RKILKFI 221 (229)
T ss_dssp TCCHHHHHHHHHT-----TSCEEEEESSHHHHHHHHTTTT-SEEEEESSS-----CCCCSEEESSHHHH--HHHHHHH
T ss_pred CCCHHHHHHHHhc-----cccceeecCCCChHHHHhccCC-eEEEEeCCC-----CccCeEEcCCHHHH--HHHHHHH
Confidence 3344555555554 3689999999999999999974 345544432 24789999998885 6666654
|
| >d2amya1 c.108.1.10 (A:4-246) Phosphomannomutase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Predicted hydrolases Cof domain: Phosphomannomutase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.13 E-value=0.00012 Score=74.70 Aligned_cols=33 Identities=12% Similarity=-0.053 Sum_probs=25.9
Q ss_pred cCCCCCcEEEEcC----ChhhHHHHHHcCCeEEEEcC
Q 001380 235 LNVPTSECIVIED----ALAGVQAAKAAQMRCIAVTT 267 (1089)
Q Consensus 235 lgv~p~~~v~VGD----~~~Di~aA~~aG~~~i~V~~ 267 (1089)
++++++++++||| +.||++|.+.+|...+.|..
T Consensus 194 ~~~~~~ev~afGD~~~~g~NDi~Ml~~~g~~~~~v~~ 230 (243)
T d2amya1 194 ENDGYKTIYFFGDKTMPGGNDHEIFTDPRTMGYSVTA 230 (243)
T ss_dssp TTSCCSEEEEEECSCC---CCCHHHHCTTEEEEECSS
T ss_pred hCCCcceEEEEcCCCCCCCCcHHHHHccCCcEEEeCC
Confidence 3678899999999 56999999999966666643
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=97.11 E-value=0.047 Score=58.06 Aligned_cols=216 Identities=12% Similarity=0.198 Sum_probs=117.2
Q ss_pred eeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCC-CEEEEEECC--CcE--
Q 001380 665 NAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPIN-EKVYIAMAG--QHQ-- 739 (1089)
Q Consensus 665 d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g-~~lyvad~~--~~~-- 739 (1089)
+|....|+-+|... .|+.+|+++..+..+. .|.... +.--.++.+...+ ..+++++.. +.+
T Consensus 37 ~p~~SlI~gTdK~~-Gl~vYdL~G~~l~~~~-~Gr~NN------------VDvr~~~~l~~~~~di~vasnR~~~~~~l~ 102 (353)
T d1h6la_ 37 NPQNSKLITTNKKS-GLAVYSLEGKMLHSYH-TGKLNN------------VDIRYDFPLNGKKVDIAAASNRSEGKNTIE 102 (353)
T ss_dssp CGGGCEEEEEETTS-CCEEEETTCCEEEECC-SSCEEE------------EEEEEEEEETTEEEEEEEEEECCTTTCEEE
T ss_pred CcCccEEEEEcCcC-CEEEEcCCCcEEEecc-cCCcCc------------cccccccccCCcceEEEEEeCCcCcceeEE
Confidence 34556677777655 4999999887777763 221100 0001122222111 134445543 234
Q ss_pred EEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEE--cCCCCEEE-EEeCCCCeEEEEEc--CC-CCeEE-Eec
Q 001380 740 IWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISL--SPDFMEIY-VADSESSSIRALNL--KT-GGSRL-LAG 812 (1089)
Q Consensus 740 I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav--~~~g~~ly-vad~~~~~I~~~~~--~~-~~~~~-~~g 812 (1089)
+|.++...+.+..+.... .+.......++|||+ ++.++.+| ++....+++..+.+ .. +.+.. +.
T Consensus 103 ~~~id~~~~~l~~~~~~~--------~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lv- 173 (353)
T d1h6la_ 103 IYAIDGKNGTLQSITDPN--------RPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKV- 173 (353)
T ss_dssp EEEEETTTTEEEECSCSS--------SCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEE-
T ss_pred EEEecCcccccccccccc--------cccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEee-
Confidence 466666666665543211 111234557999999 66554444 23334567765543 22 22211 11
Q ss_pred CCCCCCCCccccCCCCCccccccccCceEEEEccC-CcEEEEeCCCCEEEEEeC--CCCeEEEEe-ccCCCCCCCCcccc
Q 001380 813 GDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKN-GQIYVADSYNHKIKKLDP--ASNRVSTLA-GIGKAGFKDGAALA 888 (1089)
Q Consensus 813 ~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~-G~lyVaD~~n~~I~~~d~--~~~~v~t~~-g~g~~g~~~g~~~~ 888 (1089)
..|.. -..+.|+++|.+ +.|||++. +..|++++. .+....++. ......
T Consensus 174 ---------r~f~~---------~~q~EGCVvDde~~~LyisEE-~~Giw~~~a~~~~~~~~~~i~~~~g~~-------- 226 (353)
T d1h6la_ 174 ---------RAFKM---------NSQTEGMAADDEYGSLYIAEE-DEAIWKFSAEPDGGSNGTVIDRADGRH-------- 226 (353)
T ss_dssp ---------EEEEC---------SSCEEEEEEETTTTEEEEEET-TTEEEEEESSTTSCSCCEEEEECSSSS--------
T ss_pred ---------eccCC---------CCccceEEEeCCCCcEEEecC-ccceEEEEeccCCCccceeeecccCcc--------
Confidence 11111 124789999864 68999997 467888853 333222222 111111
Q ss_pred cccCCCceEEEc----cCCcEEEEECCCCEEEEEeCCCCCceEEEEe
Q 001380 889 AQLSEPAGIIEA----QNGNLFIADTNNNIIRYLDLNKEEPELQTLE 931 (1089)
Q Consensus 889 ~~l~~P~gi~vd----~~G~lyVad~~n~~I~~~~~~~~~~~~~~l~ 931 (1089)
-..-|.||++- .+|-|++++.++++..+++..+....+....
T Consensus 227 -l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~ 272 (353)
T d1h6la_ 227 -LTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQ 272 (353)
T ss_dssp -CCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred -ccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEE
Confidence 23458999974 2456999999999999999987544555544
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.02 E-value=0.24 Score=50.76 Aligned_cols=118 Identities=20% Similarity=0.193 Sum_probs=67.0
Q ss_pred eEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCC
Q 001380 777 GISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSY 856 (1089)
Q Consensus 777 glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~ 856 (1089)
...+..++.. +++-+..+.|+.++...+.......+ + ...-.++..+++++++-+.
T Consensus 180 ~~~~~~~~~~-l~s~~~dg~i~~~d~~~~~~~~~~~~------------~-----------~~~v~~~~~~~~~l~s~s~ 235 (342)
T d2ovrb2 180 VYSLQFDGIH-VVSGSLDTSIRVWDVETGNCIHTLTG------------H-----------QSLTSGMELKDNILVSGNA 235 (342)
T ss_dssp EEEEEECSSE-EEEEETTSCEEEEETTTCCEEEEECC------------C-----------CSCEEEEEEETTEEEEEET
T ss_pred cccccCCCCE-EEEEeCCCeEEEeecccceeeeEecc------------c-----------ccceeEEecCCCEEEEEcC
Confidence 3444556634 44555668899998876554322110 0 0111233445667777778
Q ss_pred CCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCCCceEEEEe
Q 001380 857 NHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKEEPELQTLE 931 (1089)
Q Consensus 857 n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~~~~~~~l~ 931 (1089)
++.|+.+|............... ..... .++..+++++++-..++.|+.+++.++. .+.++.
T Consensus 236 d~~i~iwd~~~~~~~~~~~~~~~----------~~~~~--~~~~~~~~~~~s~s~Dg~i~iwd~~tg~-~i~~~~ 297 (342)
T d2ovrb2 236 DSTVKIWDIKTGQCLQTLQGPNK----------HQSAV--TCLQFNKNFVITSSDDGTVKLWDLKTGE-FIRNLV 297 (342)
T ss_dssp TSCEEEEETTTCCEEEEECSTTS----------CSSCE--EEEEECSSEEEEEETTSEEEEEETTTCC-EEEEEE
T ss_pred CCEEEEEecccccccccccccce----------eeece--eecccCCCeeEEEcCCCEEEEEECCCCC-EEEEEe
Confidence 89999999876554433211000 11112 3344456777777788999999998762 455554
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.86 E-value=0.085 Score=53.72 Aligned_cols=192 Identities=10% Similarity=0.048 Sum_probs=111.4
Q ss_pred CceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEE
Q 001380 603 PGKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHAL 681 (1089)
Q Consensus 603 P~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I 681 (1089)
|..++..+ ++.++++... ..+..++.. ++.+..+... ....++.++++.+.++-...+.|
T Consensus 83 ~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~v~~~~~~~v 143 (287)
T d1pgua2 83 PKVASANN-DGFTAVLTND-DDLLILQSFTGDIIKSVRLN-----------------SPGSAVSLSQNYVAVGLEEGNTI 143 (287)
T ss_dssp EEEEEECS-SSEEEEEETT-SEEEEEETTTCCEEEEEECS-----------------SCEEEEEECSSEEEEEETTTSCE
T ss_pred eeeeeecc-CCceEEEeec-ccceeeeccceeeeeecccc-----------------ceeeeeeccCcceeeecccccee
Confidence 55566664 6666666554 455555544 6666655432 23456777888788877667788
Q ss_pred EEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCCCcccc
Q 001380 682 REIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGDGYERN 761 (1089)
Q Consensus 682 ~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~g~~~~ 761 (1089)
+.++..+........... -.....|+++|++..|+++. ..+.|..||..++......-.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~---------------~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~---- 203 (287)
T d1pgua2 144 QVFKLSDLEVSFDLKTPL---------------RAKPSYISISPSETYIAAGD-VMGKILLYDLQSREVKTSRWAF---- 203 (287)
T ss_dssp EEEETTEEEEEEECSSCC---------------SSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEEECCSCC----
T ss_pred eeeeccccceeeeeeecc---------------CCceeEEEeccCcccccccc-ccccccceeecccccccccccc----
Confidence 889876544333221111 12467899999997666665 4678889998877654321111
Q ss_pred CCCCCCCCccccCCceEEEcCCC---------CEEEEEeCCCCeEEEEEcCCCCe-EEEecCCCCCCCCccccCCCCCcc
Q 001380 762 LNGSSSLNTSFAQPSGISLSPDF---------MEIYVADSESSSIRALNLKTGGS-RLLAGGDPIFPDNLFKFGDRDGMG 831 (1089)
Q Consensus 762 ~~g~~~~~~~~~~P~glav~~~g---------~~lyvad~~~~~I~~~~~~~~~~-~~~~g~~~~~~~~l~~~g~~dg~~ 831 (1089)
.-.....++++|.+ +.++++-+..++|+.++...+.. ..... |+
T Consensus 204 ---------h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~------------~h----- 257 (287)
T d1pgua2 204 ---------RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN------------AH----- 257 (287)
T ss_dssp ---------CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT------------SS-----
T ss_pred ---------cccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeC------------CC-----
Confidence 00112344444432 25666777778899998764321 11100 11
Q ss_pred ccccccCceEEEEccCCcEEEEeCCCCEEEEEe
Q 001380 832 SEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLD 864 (1089)
Q Consensus 832 ~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d 864 (1089)
-....++++.+++.++. -...+.|+..+
T Consensus 258 ----~~~V~~v~~~~~~~l~s-~g~D~~v~iW~ 285 (287)
T d1pgua2 258 ----KDGVNNLLWETPSTLVS-SGADACIKRWN 285 (287)
T ss_dssp ----TTCEEEEEEEETTEEEE-EETTSCEEEEE
T ss_pred ----CCCeEEEEECCCCEEEE-EECCCeEEEEE
Confidence 12357788888876544 44567777665
|
| >d2fuea1 c.108.1.10 (A:13-256) Phosphomannomutase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Predicted hydrolases Cof domain: Phosphomannomutase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.79 E-value=0.00054 Score=69.54 Aligned_cols=43 Identities=5% Similarity=-0.121 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHcCCCCCcEEEEcCCh----hhHHHHHHcCCeEEEEcC
Q 001380 222 KPAPDIFLSASKILNVPTSECIVIEDAL----AGVQAAKAAQMRCIAVTT 267 (1089)
Q Consensus 222 KP~~~~~~~~l~~lgv~p~~~v~VGD~~----~Di~aA~~aG~~~i~V~~ 267 (1089)
--|...++.+++ .+.+++++|||+. ||++|-+.+|...+.|..
T Consensus 184 vsKg~al~~L~~---~~~~ev~afGD~~~~G~ND~eml~~a~~~~~av~n 230 (244)
T d2fuea1 184 WDKRYCLDSLDQ---DSFDTIHFFGNETSPGGNDFEIFADPRTVGHSVVS 230 (244)
T ss_dssp CSTTHHHHHHTT---SCCSEEEEEESCCSTTSTTHHHHHSTTSEEEECSS
T ss_pred ccHHHHHHHHhc---CChhhEEEEcCCCCCCCCcHHHHHcCCCcEEEcCC
Confidence 334455555543 4789999999975 999999999976666644
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.78 E-value=0.064 Score=55.27 Aligned_cols=75 Identities=11% Similarity=0.118 Sum_probs=46.9
Q ss_pred CceEEEeecCCeEEEEeCCCCEEEEEeCC--CCEEE---EEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC
Q 001380 603 PGKLAIDILNNRLFISDSNHNRIVVTDLD--GNFIV---QIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE 677 (1089)
Q Consensus 603 P~~vavd~~~g~L~vsd~~~~~I~~~~~~--g~~~~---~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~ 677 (1089)
-..|+++| +++++++-+..+.|.+++.+ ..... ..+.. .....+++.+++..++++-..
T Consensus 14 I~~l~fsp-~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~---------------~~V~~v~f~~~~~~~l~sg~~ 77 (342)
T d1yfqa_ 14 ISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYK---------------HPLLCCNFIDNTDLQIYVGTV 77 (342)
T ss_dssp EEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECS---------------SCEEEEEEEESSSEEEEEEET
T ss_pred EEEEEEeC-CCCEEEEEECCCeEEEEEccCCCcceEEEEecCCC---------------CCEEEEEEeCCCCCEEEEccc
Confidence 45789998 55555555667899998764 22222 22211 134788898876655555556
Q ss_pred CCEEEEEECCCCeEEE
Q 001380 678 NHALREIDFVNDTVRT 693 (1089)
Q Consensus 678 n~~I~~~d~~~g~v~~ 693 (1089)
++.|+.++...+....
T Consensus 78 d~~v~~w~~~~~~~~~ 93 (342)
T d1yfqa_ 78 QGEILKVDLIGSPSFQ 93 (342)
T ss_dssp TSCEEEECSSSSSSEE
T ss_pred ccceeeeecccccccc
Confidence 7888888876644333
|
| >d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Hypothetical protein EF0770 species: Enterococcus faecalis [TaxId: 1351]
Probab=96.74 E-value=0.0025 Score=61.10 Aligned_cols=116 Identities=13% Similarity=0.146 Sum_probs=71.5
Q ss_pred eeecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCC-CEEEEEEeCCCCCCh-------------hcHHHHHHH
Q 001380 444 PLQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDM-PFTVVGVHSAKFDNE-------------KDLEAIRNA 509 (1089)
Q Consensus 444 ~~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~-~v~vi~v~~~~~~~~-------------~~~~~~~~~ 509 (1089)
.+.+ .+-..++.|+.|+.+.||+|.+..+.+.++.+++.+. .+.++-+........ ...+....+
T Consensus 16 ~~~~-G~~~a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 94 (172)
T d1z6ma1 16 GLHI-GESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSA 94 (172)
T ss_dssp SEEE-SCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECCCCSTTTHHHHHHHTTCCTTCHHHHHHH
T ss_pred CCee-cCCCCCEEEEEEECCCCHhHHHHHHHHhhhhhhhccccceeeeeccccccchhhHHHHHHHHHHHHccchhHHHH
Confidence 3445 5556688999999999999999999999999988753 466665544311111 011112111
Q ss_pred HHHc-----------------------CCccc---eeecCChhHHHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHH
Q 001380 510 VLRY-----------------------GISHP---VVNDGDMNLWRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDD 563 (1089)
Q Consensus 510 ~~~~-----------------------~~~~~---v~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~ 563 (1089)
.... ++.-. -....+.+.++.|||.++||++| +|++ +.|..+.+++.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~gI~gTPt~~I---ng~~---~~g~~~~~~~~~ 168 (172)
T d1z6ma1 95 LHKMFATQDEWGNLTLEEVATYAEKNLGLKEQKDATLVSAVIAEANAAHIQFVPTIII---GEYI---FDESVTEEELRG 168 (172)
T ss_dssp HHHHHHTHHHHTTSCHHHHHHHHHHTSCCCCCCCHHHHHHHHHHHHHHTCCSSCEEEE---TTEE---ECTTCCHHHHHH
T ss_pred HHHHHHhccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHcCCCcCCEEEE---CCEE---ecCCCCHHHHHH
Confidence 1110 00000 00001235567899999999876 7765 468888888888
Q ss_pred HHH
Q 001380 564 LVE 566 (1089)
Q Consensus 564 ~l~ 566 (1089)
+|+
T Consensus 169 ~id 171 (172)
T d1z6ma1 169 YIE 171 (172)
T ss_dssp HHT
T ss_pred HHc
Confidence 875
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.66 E-value=0.11 Score=52.50 Aligned_cols=114 Identities=10% Similarity=-0.031 Sum_probs=69.0
Q ss_pred CCeEEEEeCCCCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC-C----CCEEEEEEC
Q 001380 612 NNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT-E----NHALREIDF 686 (1089)
Q Consensus 612 ~g~L~vsd~~~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~-~----n~~I~~~d~ 686 (1089)
+.++.++.. +.|++++.+|...+.+... .. .-.+.+++|+|+.|+.+.. . ...|.+++.
T Consensus 12 G~~v~f~~~--~dl~~~d~~~g~~~~Lt~~-~~-------------~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~ 75 (281)
T d1k32a2 12 GDRIIFVCC--DDLWEHDLKSGSTRKIVSN-LG-------------VINNARFFPDGRKIAIRVMRGSSLNTADLYFYNG 75 (281)
T ss_dssp TTEEEEEET--TEEEEEETTTCCEEEEECS-SS-------------EEEEEEECTTSSEEEEEEEESTTCCEEEEEEEET
T ss_pred CCEEEEEeC--CcEEEEECCCCCEEEEecC-CC-------------cccCEEECCCCCEEEEEEeeCCCCCceEEEEEEe
Confidence 555555433 4677777776555555332 11 2256789999987765532 1 136899999
Q ss_pred CCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC-----cEEEEEECCCCeEE
Q 001380 687 VNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ-----HQIWEHSTVDGVTR 751 (1089)
Q Consensus 687 ~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~-----~~I~~~~~~~g~~~ 751 (1089)
.++..+.+...+.. ........+..+++|+|+.|+++.... ..+...+..++..+
T Consensus 76 ~~g~~~~lt~~~~~----------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (281)
T d1k32a2 76 ENGEIKRITYFSGK----------STGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV 135 (281)
T ss_dssp TTTEEEECCCCCEE----------EETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE
T ss_pred cCCceEEeeecCCC----------ccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeE
Confidence 99998887532211 011123567889999999999886543 23455555554443
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.61 E-value=0.33 Score=48.33 Aligned_cols=228 Identities=12% Similarity=0.040 Sum_probs=117.6
Q ss_pred CceE-EEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCE
Q 001380 603 PGKL-AIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHA 680 (1089)
Q Consensus 603 P~~v-avd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~ 680 (1089)
..+| |+++ +|+++++-...+.|.++|.+ ++.+.++.+. .. ....| ..+++.|+.+ ..++.
T Consensus 15 ~~~V~c~~~-d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H-~~-------------~V~~v--~~~~~~l~s~-s~D~~ 76 (293)
T d1p22a2 15 SKGVYCLQY-DDQKIVSGLRDNTIKIWDKNTLECKRILTGH-TG-------------SVLCL--QYDERVIITG-SSDST 76 (293)
T ss_dssp CCCEEEEEC-CSSEEEEEESSSCEEEEESSSCCEEEEECCC-SS-------------CEEEE--ECCSSEEEEE-ETTSC
T ss_pred CCCEEEEEE-cCCEEEEEeCCCeEEEEECCCCcEEEEEecC-CC-------------CEeee--ecccceeecc-ccccc
Confidence 3445 5776 67788888888999999986 7777776532 11 12344 4467754444 45778
Q ss_pred EEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeE--EEEeCCCc
Q 001380 681 LREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVT--RAFSGDGY 758 (1089)
Q Consensus 681 I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~--~~~~g~g~ 758 (1089)
|+.++...+......... ...........+.+..+. ..+.+..++...... .......
T Consensus 77 i~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~- 136 (293)
T d1p22a2 77 VRVWDVNTGEMLNTLIHH------------------CEAVLHLRFNNGMMVTCS-KDRSIAVWDMASPTDITLRRVLVG- 136 (293)
T ss_dssp EEEEESSSCCEEEEECCC------------------CSCEEEEECCTTEEEEEE-TTSCEEEEECSSSSCCEEEEEECC-
T ss_pred cccccccccccccccccc------------------ccccccccccccceeecc-cccceeEeeccccccccccccccc-
Confidence 999998877666554322 112223333333443333 334444555443321 1111000
Q ss_pred cccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeE-EEecCCCCCCCCccccCCCCCcccccccc
Q 001380 759 ERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR-LLAGGDPIFPDNLFKFGDRDGMGSEVLLQ 837 (1089)
Q Consensus 759 ~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~-~~~g~~~~~~~~l~~~g~~dg~~~~~~l~ 837 (1089)
.-.....+.. .. ...++-+..+.|+.++..++... .+.+..
T Consensus 137 ------------~~~~v~~~~~--~~-~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~----------------------- 178 (293)
T d1p22a2 137 ------------HRAAVNVVDF--DD-KYIVSASGDRTIKVWNTSTCEFVRTLNGHK----------------------- 178 (293)
T ss_dssp ------------CSSCEEEEEE--ET-TEEEEEETTSEEEEEETTTCCEEEEEECCS-----------------------
T ss_pred ------------ccccccccee--cc-cccccccCCCceeeecCCCCcEEEEEcccc-----------------------
Confidence 0000111222 22 23334445678888887765432 222110
Q ss_pred CceEEEEccCCcEEEEeCCCCEEEEEeCCCCeEEEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEE
Q 001380 838 HPLGVYCAKNGQIYVADSYNHKIKKLDPASNRVSTLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRY 917 (1089)
Q Consensus 838 ~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~ 917 (1089)
.+ -..+..++..+++-...+.|+.+|..+......... ....-.++..+++.+++-..++.|+.
T Consensus 179 ~~-v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------------~~~~v~~~~~~~~~l~sg~~dg~i~i 242 (293)
T d1p22a2 179 RG-IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEG---------------HEELVRCIRFDNKRIVSGAYDGKIKV 242 (293)
T ss_dssp SC-EEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECC---------------CSSCEEEEECCSSEEEEEETTSCEEE
T ss_pred cc-cccccCCCCeEEEecCCCEEEEEecccceeeeeecc---------------cceeeeeccccceEEEEEcCCCEEEE
Confidence 01 112233455666666678888888876655443211 01111234445666666667788888
Q ss_pred EeCCC
Q 001380 918 LDLNK 922 (1089)
Q Consensus 918 ~~~~~ 922 (1089)
+++..
T Consensus 243 wd~~~ 247 (293)
T d1p22a2 243 WDLVA 247 (293)
T ss_dssp EEHHH
T ss_pred EECCC
Confidence 87644
|
| >d1xpja_ c.108.1.18 (A:) Hypothetical protein VC0232 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Hypothetical protein VC0232 domain: Hypothetical protein VC0232 species: Vibrio cholerae [TaxId: 666]
Probab=96.52 E-value=0.0033 Score=56.26 Aligned_cols=48 Identities=13% Similarity=0.305 Sum_probs=39.7
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCC---------------hHhHHHHHHHCCCCCCCccEEEEc
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSAD---------------RIKVDANLAAAGLPVSMFDAIVSA 215 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~---------------~~~~~~~l~~~gl~~~~fd~i~~~ 215 (1089)
.|.+++.+.|..|++.|..+.+.|.+. .+.+...|++.|++ +|.++.+
T Consensus 24 ~P~~~~Ie~l~~l~~~G~~Iii~TaR~~~~~~~~~~~~~~~~~~~T~~wL~~~gI~---Yd~Li~g 86 (124)
T d1xpja_ 24 LPRLDVIEQLREYHQLGFEIVISTARNMRTYEGNVGKINIHTLPIITEWLDKHQVP---YDEILVG 86 (124)
T ss_dssp CBCHHHHHHHHHHHHTTCEEEEEECTTTTTTTTCHHHHHHHTHHHHHHHHHHTTCC---CSEEEEC
T ss_pred CcCHHHHHHHHHHHHCCCEEEEEecCCccccCCcHHHHHHHHHHHHHHHHHHcCCC---ceEEEEC
Confidence 578999999999999999999999873 35577889999996 5666543
|
| >d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Escherichia coli [TaxId: 562]
Probab=96.46 E-value=0.0027 Score=61.91 Aligned_cols=55 Identities=16% Similarity=0.347 Sum_probs=37.5
Q ss_pred CCce-eecccccCCCEEEEEEecCCCcchhhhhhhHHHHHHHcC--CCCEEEEEEeCC
Q 001380 441 NTAP-LQFRRDLKGKVVVLDFWTYCCINCMHVLPDLEFLEKKYK--DMPFTVVGVHSA 495 (1089)
Q Consensus 441 ~g~~-~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~--~~~v~vi~v~~~ 495 (1089)
+|+. ..+.....++++|+.|+...||+|+...+.|..+.+..+ ..++.++-.+.+
T Consensus 5 eG~~y~~~~~p~~~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 62 (188)
T d1fvka_ 5 DGKQYTTLEKPVAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN 62 (188)
T ss_dssp BTTTEEECSSCCTTCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEECS
T ss_pred CCCCcEECCCCCCCCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEecC
Confidence 5553 234355678899999999999999999888765544332 234666666654
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.46 E-value=0.59 Score=47.57 Aligned_cols=189 Identities=15% Similarity=0.130 Sum_probs=103.6
Q ss_pred eCCCEEEEEECCCCEEEEEECCCCeEEE-EecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEE
Q 001380 666 AKKNLLYVADTENHALREIDFVNDTVRT-LAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHS 744 (1089)
Q Consensus 666 ~~g~~lyVaD~~n~~I~~~d~~~g~v~~-~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~ 744 (1089)
...+ .++....++.|+.++........ +.+. ......+..++..+ ++....+.|..||
T Consensus 145 ~~~~-~~~~~~~d~~i~~~d~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l-~s~~~dg~i~~~d 203 (342)
T d2ovrb2 145 YDGR-RVVSGAYDFMVKVWDPETETCLHTLQGH-------------------TNRVYSLQFDGIHV-VSGSLDTSIRVWD 203 (342)
T ss_dssp ECSS-CEEEEETTSCEEEEEGGGTEEEEEECCC-------------------SSCEEEEEECSSEE-EEEETTSCEEEEE
T ss_pred cccc-eeeeecCCCeEEEeecccceeeEEEcCc-------------------ccccccccCCCCEE-EEEeCCCeEEEee
Confidence 3444 34444456778888876655433 3211 12234455556444 4445577888899
Q ss_pred CCCCeEEE-EeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCCCCCccc
Q 001380 745 TVDGVTRA-FSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIFPDNLFK 823 (1089)
Q Consensus 745 ~~~g~~~~-~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~ 823 (1089)
...+.... +.+.. ..-..++.+ + .++++-+..+.|+.++...........+..
T Consensus 204 ~~~~~~~~~~~~~~---------------~~v~~~~~~--~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~-------- 257 (342)
T d2ovrb2 204 VETGNCIHTLTGHQ---------------SLTSGMELK--D-NILVSGNADSTVKIWDIKTGQCLQTLQGPN-------- 257 (342)
T ss_dssp TTTCCEEEEECCCC---------------SCEEEEEEE--T-TEEEEEETTSCEEEEETTTCCEEEEECSTT--------
T ss_pred cccceeeeEecccc---------------cceeEEecC--C-CEEEEEcCCCEEEEEecccccccccccccc--------
Confidence 88765443 32211 012344444 4 345555667899999987655432221100
Q ss_pred cCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCCCeE-EEEeccCCCCCCCCcccccccCCCceEEEccC
Q 001380 824 FGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPASNRV-STLAGIGKAGFKDGAALAAQLSEPAGIIEAQN 902 (1089)
Q Consensus 824 ~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~~~v-~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~ 902 (1089)
. .......+ ..+++++++-+..+.|+.+|..++.+ .++......+ .-..-..+++.++
T Consensus 258 -~---------~~~~~~~~--~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~---------~~~~v~~v~~s~~ 316 (342)
T d2ovrb2 258 -K---------HQSAVTCL--QFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGG---------SGGVVWRIRASNT 316 (342)
T ss_dssp -S---------CSSCEEEE--EECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGG---------GTCEEEEEEECSS
T ss_pred -e---------eeeceeec--ccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCC---------CCCCEEEEEECCC
Confidence 0 01112333 34567777777889999999876654 4553211110 1122456788888
Q ss_pred CcEEEEECCCC----EEEEEeCCC
Q 001380 903 GNLFIADTNNN----IIRYLDLNK 922 (1089)
Q Consensus 903 G~lyVad~~n~----~I~~~~~~~ 922 (1089)
|.++++...++ +|++++.+.
T Consensus 317 ~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 317 KLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp EEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCEEEEEeCCCCCeeEEEEEeCCC
Confidence 87776665554 588887764
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.24 E-value=0.31 Score=51.98 Aligned_cols=125 Identities=10% Similarity=0.006 Sum_probs=72.3
Q ss_pred CceEEEeecCCeEEEEeCCC-----------CEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCE
Q 001380 603 PGKLAIDILNNRLFISDSNH-----------NRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNL 670 (1089)
Q Consensus 603 P~~vavd~~~g~L~vsd~~~-----------~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~ 670 (1089)
+...++.+.+|++||-...+ ..+.++|+. ++........ .. . -..-.+.++.++|.
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~-~~--------~--~~~~~~~~~~~~g~- 88 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV-TK--------H--DMFCPGISMDGNGQ- 88 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE-CS--------C--CCSSCEEEECTTSC-
T ss_pred ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCC-CC--------c--ccceeEEEEecCCc-
Confidence 44567777789999863211 135567775 3322111000 00 0 01225778888898
Q ss_pred EEEEEC-CCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC------CcEEEEE
Q 001380 671 LYVADT-ENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG------QHQIWEH 743 (1089)
Q Consensus 671 lyVaD~-~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~------~~~I~~~ 743 (1089)
+||... ....+.++|+.++.-+........ ..-...++.++| .+|+.-.. ...++.|
T Consensus 89 i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~---------------r~~~~~~~~~dG-~v~v~GG~~~~~~~~~~v~~y 152 (387)
T d1k3ia3 89 IVVTGGNDAKKTSLYDSSSDSWIPGPDMQVA---------------RGYQSSATMSDG-RVFTIGGSWSGGVFEKNGEVY 152 (387)
T ss_dssp EEEECSSSTTCEEEEEGGGTEEEECCCCSSC---------------CSSCEEEECTTS-CEEEECCCCCSSSCCCCEEEE
T ss_pred EEEeecCCCcceeEecCccCccccccccccc---------------ccccceeeecCC-ceeeeccccccccccceeeee
Confidence 777653 346889999998887765421110 122456666666 66665432 2468999
Q ss_pred ECCCCeEEEEeC
Q 001380 744 STVDGVTRAFSG 755 (1089)
Q Consensus 744 ~~~~g~~~~~~g 755 (1089)
|+.+.+...+..
T Consensus 153 d~~~~~W~~~~~ 164 (387)
T d1k3ia3 153 SPSSKTWTSLPN 164 (387)
T ss_dssp ETTTTEEEEETT
T ss_pred cCCCCceeecCC
Confidence 999998877653
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.17 E-value=0.66 Score=49.47 Aligned_cols=140 Identities=13% Similarity=-0.034 Sum_probs=82.9
Q ss_pred CcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC
Q 001380 658 RPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ 737 (1089)
Q Consensus 658 ~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~ 737 (1089)
....++++++| ++++-..++.|+.+|+.++...........- ...-...+.|+|+|+|..|..+...+
T Consensus 186 ~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l----------~~h~~~V~~l~~spdg~~l~sgs~D~ 253 (393)
T d1sq9a_ 186 FATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSM----------INNSNSIRSVKFSPQGSLLAIAHDSN 253 (393)
T ss_dssp CCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC-------------CCCCCEEEEEECSSTTEEEEEEEET
T ss_pred cEEEEEECCCC--EEEEEeCCCcEEEEeeccccccccccccccc----------ccccceEEEcccccccceeeeecCCC
Confidence 35678888887 3455667899999999887644322111100 01112467899999997776654322
Q ss_pred --cEEEEEECCCCeEEE-EeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeE-EEec
Q 001380 738 --HQIWEHSTVDGVTRA-FSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSR-LLAG 812 (1089)
Q Consensus 738 --~~I~~~~~~~g~~~~-~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~-~~~g 812 (1089)
..|..||..++.... +........... .....-..-..|+++|+| .+.++-+..++|+.++.+++... ++-|
T Consensus 254 t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~--~~~gH~~~V~~l~fspd~-~~l~S~s~D~~v~vWd~~~g~~~~~l~g 329 (393)
T d1sq9a_ 254 SFGCITLYETEFGERIGSLSVPTHSSQASL--GEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWDVKTKERITTLNM 329 (393)
T ss_dssp TEEEEEEEETTTCCEEEEECBC----------CCBSBSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred Ccceeeecccccceeeeeecccccccccee--eeecccCceeeeccCCCC-CeeEEECCCCEEEEEECCCCCEEEEECC
Confidence 357788988875443 322111000000 000111234689999998 66677788899999999877543 3433
|
| >d2obba1 c.108.1.25 (A:1-122) Hypothetical protein BT0820 {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: BT0820-like domain: Hypothetical protein BT0820 species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.08 E-value=0.0035 Score=56.06 Aligned_cols=45 Identities=20% Similarity=0.126 Sum_probs=36.4
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCCh---HhHHHHHHHCCCCCCCccEE
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADR---IKVDANLAAAGLPVSMFDAI 212 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~---~~~~~~l~~~gl~~~~fd~i 212 (1089)
.+.|++.++|..|++.|..+.+.|.+.. +.....|++.|++ +|.+
T Consensus 21 kPi~~~Ie~l~~L~~~G~~IIi~TaR~~~~~~~t~~wL~~~~i~---yd~i 68 (122)
T d2obba1 21 EEIPFAVETLKLLQQEKHRLILWSVREGELLDEAIEWCRARGLE---FYAA 68 (122)
T ss_dssp CBCTTHHHHHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTTCC---CSEE
T ss_pred cccHHHHHHHHHHHHCCCeEEEEecCCCcchHHHHHHHHHcCCC---ceeh
Confidence 4789999999999999999999999855 3455667777886 5554
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.05 E-value=0.29 Score=49.41 Aligned_cols=192 Identities=12% Similarity=0.048 Sum_probs=110.0
Q ss_pred CcceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCC
Q 001380 658 RPQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQ 737 (1089)
Q Consensus 658 ~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~ 737 (1089)
.|..+++.+++. ++++.. ...+..++..++........ .....++.+.++.++++....
T Consensus 82 ~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~v~~~~~ 140 (287)
T d1pgua2 82 QPKVASANNDGF-TAVLTN-DDDLLILQSFTGDIIKSVRL-------------------NSPGSAVSLSQNYVAVGLEEG 140 (287)
T ss_dssp CEEEEEECSSSE-EEEEET-TSEEEEEETTTCCEEEEEEC-------------------SSCEEEEEECSSEEEEEETTT
T ss_pred ceeeeeeccCCc-eEEEee-cccceeeeccceeeeeeccc-------------------cceeeeeeccCcceeeecccc
Confidence 577788887766 444433 45567777666543333211 122456777788888887777
Q ss_pred cEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEEecCCCCC
Q 001380 738 HQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLLAGGDPIF 817 (1089)
Q Consensus 738 ~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~~g~~~~~ 817 (1089)
+.|..|+..+......... ..-.....|+++++|..|++++ ..+.|+.++..++......
T Consensus 141 ~~v~~~~~~~~~~~~~~~~-------------~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~------ 200 (287)
T d1pgua2 141 NTIQVFKLSDLEVSFDLKT-------------PLRAKPSYISISPSETYIAAGD-VMGKILLYDLQSREVKTSR------ 200 (287)
T ss_dssp SCEEEEETTEEEEEEECSS-------------CCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEEECC------
T ss_pred ceeeeeeccccceeeeeee-------------ccCCceeEEEeccCcccccccc-ccccccceeeccccccccc------
Confidence 7788887654433222110 0112357899999996666655 5688999998765443210
Q ss_pred CCCccccCCCCCccccccccCceEEEE----------ccCCcEEEEeCCCCEEEEEeCCC-Ce-EEEEeccCCCCCCCCc
Q 001380 818 PDNLFKFGDRDGMGSEVLLQHPLGVYC----------AKNGQIYVADSYNHKIKKLDPAS-NR-VSTLAGIGKAGFKDGA 885 (1089)
Q Consensus 818 ~~~l~~~g~~dg~~~~~~l~~P~gva~----------~~~G~lyVaD~~n~~I~~~d~~~-~~-v~t~~g~g~~g~~~g~ 885 (1089)
+. ++. + ....+++ ..++.++++-+..+.|+.+|... +. +..+.+
T Consensus 201 ----~~-~h~-~--------~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~---------- 256 (287)
T d1pgua2 201 ----WA-FRT-S--------KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNA---------- 256 (287)
T ss_dssp ----SC-CCS-S--------CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTS----------
T ss_pred ----cc-ccc-c--------ccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCC----------
Confidence 00 110 0 1122333 34556777777778899888643 22 222221
Q ss_pred ccccccCCCceEEEccCCcEEEEECCCCEEEEEe
Q 001380 886 ALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLD 919 (1089)
Q Consensus 886 ~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~ 919 (1089)
.-....++++.+++.|+ +-..++.|+.++
T Consensus 257 ----h~~~V~~v~~~~~~~l~-s~g~D~~v~iW~ 285 (287)
T d1pgua2 257 ----HKDGVNNLLWETPSTLV-SSGADACIKRWN 285 (287)
T ss_dssp ----STTCEEEEEEEETTEEE-EEETTSCEEEEE
T ss_pred ----CCCCeEEEEECCCCEEE-EEECCCeEEEEE
Confidence 22346778877777654 444567787765
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.79 E-value=0.48 Score=50.64 Aligned_cols=138 Identities=11% Similarity=0.094 Sum_probs=84.5
Q ss_pred CCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEE-EecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEE
Q 001380 774 QPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRL-LAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYV 852 (1089)
Q Consensus 774 ~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~-~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyV 852 (1089)
....+++++++ .| ++-+..+.|+.++..++.... +..... ..++ -.....|+++|+|++.+
T Consensus 186 ~~~~v~~s~dg-~l-asgs~Dg~i~iwd~~~~~~~~~~~~~~~-------l~~h---------~~~V~~l~~spdg~~l~ 247 (393)
T d1sq9a_ 186 FATSVDISERG-LI-ATGFNNGTVQISELSTLRPLYNFESQHS-------MINN---------SNSIRSVKFSPQGSLLA 247 (393)
T ss_dssp CCCEEEECTTS-EE-EEECTTSEEEEEETTTTEEEEEEECCC----------CC---------CCCEEEEEECSSTTEEE
T ss_pred cEEEEEECCCC-EE-EEEeCCCcEEEEeecccccccccccccc-------cccc---------cceEEEcccccccceee
Confidence 35678999987 44 566778999999988664322 211100 0011 11246789999998777
Q ss_pred EeCCCC---EEEEEeCCCCeE-EEEeccCCCCCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCCCceEE
Q 001380 853 ADSYNH---KIKKLDPASNRV-STLAGIGKAGFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKEEPELQ 928 (1089)
Q Consensus 853 aD~~n~---~I~~~d~~~~~v-~t~~g~g~~g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~~~~~~ 928 (1089)
+-+..+ .|+.+|.+++.. .++...... ........+.-..-.+|++.++|+++++-..++.|++.++.++ ..+.
T Consensus 248 sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~-~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g-~~~~ 325 (393)
T d1sq9a_ 248 IAHDSNSFGCITLYETEFGERIGSLSVPTHS-SQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERIT 325 (393)
T ss_dssp EEEEETTEEEEEEEETTTCCEEEEECBC---------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEE
T ss_pred eecCCCCcceeeecccccceeeeeecccccc-ccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCC-CEEE
Confidence 755433 578889877654 344321110 0000001112234567999999999999999999999999887 3566
Q ss_pred EEe
Q 001380 929 TLE 931 (1089)
Q Consensus 929 ~l~ 931 (1089)
++.
T Consensus 326 ~l~ 328 (393)
T d1sq9a_ 326 TLN 328 (393)
T ss_dssp EEE
T ss_pred EEC
Confidence 665
|
| >d1y8aa1 c.108.1.24 (A:1-308) Hypothetical protein AF1437 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: AF1437-like domain: Hypothetical protein AF1437 species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.48 E-value=0.27 Score=47.67 Aligned_cols=123 Identities=14% Similarity=0.110 Sum_probs=82.1
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCC----ccC--------------------
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADA----FEN-------------------- 220 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~----~~~-------------------- 220 (1089)
.+.||+.++|+.|.+. .+-+|+|...+++++.+....|++ +. +.+.+- ...
T Consensus 81 ~lvpgA~~~lk~l~~~-m~~yIvSTSY~qyi~al~~~~gfp---~e-~~~T~~~lD~~~~p~ee~e~ll~i~~~~~d~~~ 155 (308)
T d1y8aa1 81 KFVPDAEKAMATLQER-WTPVVISTSYTQYLRRTASMIGVR---GE-LHGTEVDFDSIAVPEGLREELLSIIDVIASLSG 155 (308)
T ss_dssp CBCTTHHHHHHHHHTT-CEEEEEEEEEHHHHHHHHHHTTCC---SE-EEEEBCCGGGCCCCHHHHHHHHHHHHHHHHCCH
T ss_pred eecCCHHHHHHHHHhh-CCcEEEeccHHHHHHHHHhhcCCC---ce-eecccccccccCCChHHHHHHHHHhhhccCccH
Confidence 7899999999999998 889999999999999999999996 22 332210 000
Q ss_pred ----------------------CC-----CCHHHHHHHHHHcCCCCCcEEEEcCChhhHHHHHHc---CCeEEEEcCCCC
Q 001380 221 ----------------------LK-----PAPDIFLSASKILNVPTSECIVIEDALAGVQAAKAA---QMRCIAVTTTLS 270 (1089)
Q Consensus 221 ----------------------~K-----P~~~~~~~~l~~lgv~p~~~v~VGD~~~Di~aA~~a---G~~~i~V~~g~~ 270 (1089)
-| -+..+.+..++..++.+ .++|||+.+|+++.+.+ |--.|.++. .
T Consensus 156 eel~e~~d~~f~~~e~~~i~e~Vk~VGgg~k~~i~~~~~~~~~~~~--~~~VGDSITDve~Lr~~r~~gGlaIsFNG--N 231 (308)
T d1y8aa1 156 EELFRKLDELFSRSEVRKIVESVKAVGAGEKAKIMRGYCESKGIDF--PVVVGDSISDYKMFEAARGLGGVAIAFNG--N 231 (308)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHTCBCCCHHHHHHHHHHHHHHHTCSS--CEEEECSGGGHHHHHHHHHTTCEEEEESC--C
T ss_pred HHHHHHHHHHhccchHhhHHhhhcccCCchhHHHHHhhcccccCCc--ceeccCccccHHHHHHHhcCCCeeEEecC--c
Confidence 01 12233445555667755 49999999998876654 445566655 4
Q ss_pred HHHHhhcCCcEEecCcccCCHHHHHhcc
Q 001380 271 EERLKEASPSLIRKEIGSVSLNDILTGG 298 (1089)
Q Consensus 271 ~~~l~~~~~d~vi~dl~el~i~~ll~~~ 298 (1089)
.-.+.+ |+..+-+.+...+..++..+
T Consensus 232 ~Yal~e--A~VaiiS~~~~a~~~i~dlf 257 (308)
T d1y8aa1 232 EYALKH--ADVVIISPTAMSEAKVIELF 257 (308)
T ss_dssp HHHHTT--CSEEEECSSTHHHHHHHHHH
T ss_pred cccccc--cceEEeccchhHHHHHHHHH
Confidence 556655 45555555555445565554
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.27 E-value=1.6 Score=43.09 Aligned_cols=201 Identities=15% Similarity=0.183 Sum_probs=108.0
Q ss_pred EEEeecCCeEEEEeCC--CCEEEEEeCCCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCC--CEE
Q 001380 606 LAIDILNNRLFISDSN--HNRIVVTDLDGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTEN--HAL 681 (1089)
Q Consensus 606 vavd~~~g~L~vsd~~--~~~I~~~~~~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n--~~I 681 (1089)
.+++|++.+|.++... ...++..+.++.....+.... .......++|+|..++..-... ..+
T Consensus 44 P~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~spdg~~i~~~~~~~~~~~~ 109 (269)
T d2hqsa1 44 PAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP--------------RHNGAPAFSPDGSKLAFALSKTGSLNL 109 (269)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCS--------------SCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred eEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeee--------------cccccceecCCCCeeeEeeecCCccce
Confidence 4677766777554333 235666776655554443321 1346677888887655543322 233
Q ss_pred EEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC--CCcEEEEEECCCCeEEEEeCCCcc
Q 001380 682 REIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA--GQHQIWEHSTVDGVTRAFSGDGYE 759 (1089)
Q Consensus 682 ~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~--~~~~I~~~~~~~g~~~~~~g~g~~ 759 (1089)
................ ........+.+.++.++++.. +...|+.++..++........
T Consensus 110 ~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~--- 169 (269)
T d2hqsa1 110 YVMDLASGQIRQVTDG-----------------RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWE--- 169 (269)
T ss_dssp EEEETTTCCEEECCCC-----------------SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCS---
T ss_pred eecccccccceeeeec-----------------cccccccccccccccceecccccCCceEeeeecccccceeeecc---
Confidence 3333322222222110 112233345555656665543 344788888776654443311
Q ss_pred ccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCC--eEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCcccccccc
Q 001380 760 RNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESS--SIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQ 837 (1089)
Q Consensus 760 ~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~--~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~ 837 (1089)
........++++|+.++.....++ .|..++..++....+....
T Consensus 170 ------------~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------------------- 214 (269)
T d2hqsa1 170 ------------GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF----------------------- 214 (269)
T ss_dssp ------------SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS-----------------------
T ss_pred ------------cccccccccccccceeEEEeecCCceeeeEeecccccceEeecCc-----------------------
Confidence 112335578899887776655443 5666676655554332110
Q ss_pred CceEEEEccCCc-E-EEEe-CCCCEEEEEeCCCCeEEEEec
Q 001380 838 HPLGVYCAKNGQ-I-YVAD-SYNHKIKKLDPASNRVSTLAG 875 (1089)
Q Consensus 838 ~P~gva~~~~G~-l-yVaD-~~n~~I~~~d~~~~~v~t~~g 875 (1089)
.-....++|||+ | |+++ ..+..|.+++.+++....+..
T Consensus 215 ~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~ 255 (269)
T d2hqsa1 215 LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPA 255 (269)
T ss_dssp SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCC
T ss_pred cccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeC
Confidence 012357899995 4 4444 345678899998888777653
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=95.24 E-value=3.3 Score=46.51 Aligned_cols=180 Identities=13% Similarity=0.152 Sum_probs=102.6
Q ss_pred CCeEEEEeCCCCEEEEEeC-C-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCC
Q 001380 612 NNRLFISDSNHNRIVVTDL-D-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVND 689 (1089)
Q Consensus 612 ~g~L~vsd~~~~~I~~~~~-~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g 689 (1089)
+|.|||++...++|+.+|. + |+.+.++......... + .........|+++. ++ .||+.+ .+.+|..+|.++|
T Consensus 62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~-~--~~~~~~~~rg~a~~-~~-~i~~~~-~~g~l~alda~tG 135 (571)
T d2ad6a1 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTK-A--VMCCDVVDRGLAYG-AG-QIVKKQ-ANGHLLALDAKTG 135 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGG-G--GCTTCSCCCCCEEE-TT-EEEEEC-TTSEEEEEETTTC
T ss_pred CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccc-c--ccccCcCCCcceee-CC-eEEEEe-CCCcEEeeehhhh
Confidence 7999999976678999986 5 9999887543221110 0 00011223688886 34 488876 4678999999998
Q ss_pred eEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC-----CcEEEEEECCCCeEEEE-eCCCcccc--
Q 001380 690 TVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG-----QHQIWEHSTVDGVTRAF-SGDGYERN-- 761 (1089)
Q Consensus 690 ~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~-----~~~I~~~~~~~g~~~~~-~g~g~~~~-- 761 (1089)
++.--.+.+.... ...+.++ .+.+ ++.+|+.... .+.|+.+|..+|.+... ...+....
T Consensus 136 ~~~w~~~~~~~~~---------~~~~t~~-p~v~---~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~ 202 (571)
T d2ad6a1 136 KINWEVEVCDPKV---------GSTLTQA-PFVA---KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVR 202 (571)
T ss_dssp CEEEEEECCCGGG---------TCBCCSC-CEEE---TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHT
T ss_pred hhhcccccccccc---------ccceeec-CeEe---CCeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCccccc
Confidence 8755443221100 0011111 1233 2588887653 46899999999977643 22111000
Q ss_pred ----CCCCCC-------------C---CccccCC-ceEEEcCCCCEEEEEeCC---------------CCeEEEEEcCCC
Q 001380 762 ----LNGSSS-------------L---NTSFAQP-SGISLSPDFMEIYVADSE---------------SSSIRALNLKTG 805 (1089)
Q Consensus 762 ----~~g~~~-------------~---~~~~~~P-~glav~~~g~~lyvad~~---------------~~~I~~~~~~~~ 805 (1089)
.+.... . ....... ...++|++.+.+|+.... +++|..++.++|
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG 282 (571)
T d2ad6a1 203 LAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTG 282 (571)
T ss_dssp BCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTC
T ss_pred ccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccch
Confidence 000000 0 0000111 356888888788876542 467899999988
Q ss_pred CeEEE
Q 001380 806 GSRLL 810 (1089)
Q Consensus 806 ~~~~~ 810 (1089)
...-.
T Consensus 283 ~~~W~ 287 (571)
T d2ad6a1 283 MAKWG 287 (571)
T ss_dssp CEEEE
T ss_pred hheec
Confidence 87643
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.03 E-value=0.055 Score=60.24 Aligned_cols=157 Identities=11% Similarity=-0.009 Sum_probs=92.3
Q ss_pred cceeEEeeCCCEEEEEECCCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC---
Q 001380 659 PQGLAYNAKKNLLYVADTENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA--- 735 (1089)
Q Consensus 659 P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~--- 735 (1089)
+..+...+++.++|. + .+.|.++|..++..+.+...-.. ........++.|+|+|..|.++..
T Consensus 19 ~~~~~W~~d~~~~~~-~--~~~~~~~~~~t~~~~~~~~~~~~-----------~~~~~~i~~~~~SpDg~~i~~~~~~~~ 84 (470)
T d2bgra1 19 LYSLRWISDHEYLYK-Q--ENNILVFNAEYGNSSVFLENSTF-----------DEFGHSINDYSISPDGQFILLEYNYVK 84 (470)
T ss_dssp CCCCEECSSSEEEEE-S--SSCEEEEETTTCCEEEEECTTTT-----------TTSSSCCCEEEECTTSSEEEEEEEEEE
T ss_pred ccCCEeCCCCEEEEE-c--CCcEEEEECCCCCEEEEEchhhh-----------hhccCccceeEECCCCCEEEEEECCcc
Confidence 345666777775553 2 35689999999887776532211 111235678999999998877642
Q ss_pred -----CCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEEE
Q 001380 736 -----GQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRLL 810 (1089)
Q Consensus 736 -----~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~~ 810 (1089)
..+.+|.+|..++.+..+.... ......+++|||+.|.+.. ++.++.++..++....+
T Consensus 85 ~~r~s~~~~~~l~d~~~~~~~~l~~~~---------------~~~~~~~~SPDG~~ia~~~--~~~l~~~~~~~g~~~~~ 147 (470)
T d2bgra1 85 QWRHSYTASYDIYDLNKRQLITEERIP---------------NNTQWVTWSPVGHKLAYVW--NNDIYVKIEPNLPSYRI 147 (470)
T ss_dssp CSSSCEEEEEEEEETTTTEECCSSCCC---------------TTEEEEEECSSTTCEEEEE--TTEEEEESSTTSCCEEC
T ss_pred eeeeccCceEEEEECCCCcccccccCC---------------ccccccccccCcceeeEee--cccceEEECCCCceeee
Confidence 2357888999888776554321 1234678899997665543 35678888776665433
Q ss_pred ecCCCCCCCCccccCCCCCccccccccCceEEEEccCCc
Q 001380 811 AGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQ 849 (1089)
Q Consensus 811 ~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~ 849 (1089)
..... ......|..+....+..+....++.++|||+
T Consensus 148 t~~~~---~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk 183 (470)
T d2bgra1 148 TWTGK---EDIIYNGITDWVYEEEVFSAYSALWWSPNGT 183 (470)
T ss_dssp CSCCB---TTTEEESBCCHHHHHHTSSSSBCEEECTTSS
T ss_pred eeccC---CCcccccccceeeeeeecCCccccEECCCCC
Confidence 22110 0111112222222222344566788999995
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=94.88 E-value=4.1 Score=45.69 Aligned_cols=137 Identities=15% Similarity=0.217 Sum_probs=76.2
Q ss_pred ceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC-----
Q 001380 604 GKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE----- 677 (1089)
Q Consensus 604 ~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~----- 677 (1089)
.++++. ++++|+.+. .++++.+|.. |+.+......... .| .....+ .+.+ + +.+||.-..
T Consensus 109 rg~a~~--~~~i~~~~~-~g~l~alda~tG~~~w~~~~~~~~---~~----~~~t~~-p~v~--~-~~vivg~~~~~~~~ 174 (571)
T d2ad6a1 109 RGLAYG--AGQIVKKQA-NGHLLALDAKTGKINWEVEVCDPK---VG----STLTQA-PFVA--K-DTVLMGCSGAELGV 174 (571)
T ss_dssp CCCEEE--TTEEEEECT-TSEEEEEETTTCCEEEEEECCCGG---GT----CBCCSC-CEEE--T-TEEEEECBCGGGTC
T ss_pred Ccceee--CCeEEEEeC-CCcEEeeehhhhhhhccccccccc---cc----cceeec-CeEe--C-CeEEEeeccccccc
Confidence 356765 788998875 5788888886 8877665432110 00 011111 1222 3 447776542
Q ss_pred CCEEEEEECCCCeEEEEecC-CCCCC-----CCC---------------CCCcccccccCCce-eEEEecCCCEEEEEEC
Q 001380 678 NHALREIDFVNDTVRTLAGN-GTKGS-----DYQ---------------GGEKGTSQLLNSPW-DVCYKPINEKVYIAMA 735 (1089)
Q Consensus 678 n~~I~~~d~~~g~v~~~ag~-g~~~~-----~~~---------------~~~~~~~~~l~~P~-~la~~~~g~~lyvad~ 735 (1089)
.+.|+.+|..+|++.-..-. +.... +.. .........-..+| ..++|+..+.+|+...
T Consensus 175 ~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg 254 (571)
T d2ad6a1 175 RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSG 254 (571)
T ss_dssp CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred cCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecc
Confidence 46899999998876653321 11000 000 00000001112233 3688999988888654
Q ss_pred C---------------CcEEEEEECCCCeEEEEe
Q 001380 736 G---------------QHQIWEHSTVDGVTRAFS 754 (1089)
Q Consensus 736 ~---------------~~~I~~~~~~~g~~~~~~ 754 (1089)
. .+.++.+|..+|++....
T Consensus 255 ~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~ 288 (571)
T d2ad6a1 255 NPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGY 288 (571)
T ss_dssp CCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEE
T ss_pred cccCccccccccccccccceeeeeccchhheecc
Confidence 2 467999999999876544
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.86 E-value=0.22 Score=50.85 Aligned_cols=164 Identities=9% Similarity=-0.051 Sum_probs=90.0
Q ss_pred CcceeEEeeCCCEEEEEECCCCEEEEEECCCC--eEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEEC
Q 001380 658 RPQGLAYNAKKNLLYVADTENHALREIDFVND--TVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMA 735 (1089)
Q Consensus 658 ~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g--~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~ 735 (1089)
.-..|+++|+|+.|.++. .++.|+.+|..++ ........+. -.....++|.+.++.++++..
T Consensus 13 ~I~~l~fsp~~~~L~s~s-~Dg~v~iwd~~~~~~~~~~~~~~~h---------------~~~V~~v~f~~~~~~~l~sg~ 76 (342)
T d1yfqa_ 13 YISDIKIIPSKSLLLITS-WDGSLTVYKFDIQAKNVDLLQSLRY---------------KHPLLCCNFIDNTDLQIYVGT 76 (342)
T ss_dssp CEEEEEEEGGGTEEEEEE-TTSEEEEEEEETTTTEEEEEEEEEC---------------SSCEEEEEEEESSSEEEEEEE
T ss_pred CEEEEEEeCCCCEEEEEE-CCCeEEEEEccCCCcceEEEEecCC---------------CCCEEEEEEeCCCCCEEEEcc
Confidence 348999999999666654 5788999887543 2222211110 013578999988777777777
Q ss_pred CCcEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCe-EEEecCC
Q 001380 736 GQHQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGS-RLLAGGD 814 (1089)
Q Consensus 736 ~~~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~-~~~~g~~ 814 (1089)
..+.|+.++...+.......... ..........+++ ..+++.+..+.++.++...+.. .......
T Consensus 77 ~d~~v~~w~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~ 142 (342)
T d1yfqa_ 77 VQGEILKVDLIGSPSFQALTNNE-------------ANLGICRICKYGD-DKLIAASWDGLIEVIDPRNYGDGVIAVKNL 142 (342)
T ss_dssp TTSCEEEECSSSSSSEEECBSCC-------------CCSCEEEEEEETT-TEEEEEETTSEEEEECHHHHTTBCEEEEES
T ss_pred cccceeeeecccccccccccccc-------------ccccccccccccc-ccccccccccccceeeccccccceeeeccc
Confidence 77888888877654433321110 0011122223333 4555656667888877543211 1111000
Q ss_pred CCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCC
Q 001380 815 PIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPAS 867 (1089)
Q Consensus 815 ~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~ 867 (1089)
. + ...........+..++..++.-+..+.|+.+|..+
T Consensus 143 ~---------~-------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 179 (342)
T d1yfqa_ 143 N---------S-------NNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL 179 (342)
T ss_dssp C---------S-------SSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSC
T ss_pred c---------c-------ccccceeeeeeeeccCCceeeecCCCcEEEEeccc
Confidence 0 0 00011223445566677777777778898888643
|
| >d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.40 E-value=0.035 Score=48.96 Aligned_cols=97 Identities=12% Similarity=0.142 Sum_probs=62.7
Q ss_pred cccCCCEEEEEEec-CCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhH
Q 001380 449 RDLKGKVVVLDFWT-YCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNL 527 (1089)
Q Consensus 449 ~~~~gk~vll~Fwa-~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l 527 (1089)
+.++..+.|+.|-. .-|+.|......|+++.+- .++ +.+.-... +. +...++
T Consensus 18 ~~l~~pV~l~~~~~~~~~~~~~e~~~ll~ela~l-Sdk-i~~~~~~~---~~----------------------~e~~~~ 70 (119)
T d1a8la1 18 SKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-TDK-LSYEIVDF---DT----------------------PEGKEL 70 (119)
T ss_dssp GGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-CTT-EEEEEEET---TS----------------------HHHHHH
T ss_pred HhCCCCEEEEEEecCCCchhHHHHHHHHHHHHhh-CCC-eEEEEecc---Cc----------------------chhhhH
Confidence 34454444444443 5799999888777777543 443 44433321 10 224578
Q ss_pred HHHhCCCceeEEEEECCCCcEEEEecCCCchhhHHHHHHHHHHHh
Q 001380 528 WRELGVNSWPTFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALLFY 572 (1089)
Q Consensus 528 ~~~~~v~~~Pt~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~~~ 572 (1089)
++.|+|...|++.+.+.......++.|-..-+++..+|..++.-.
T Consensus 71 ~~~~~ver~Ps~~i~~~g~~~gIrF~GiP~GhEf~SlilaIl~vs 115 (119)
T d1a8la1 71 AKRYRIDRAPATTITQDGKDFGVRYFGLPAGHEFAAFLEDIVDVS 115 (119)
T ss_dssp HHHTTCCSSSEEEEEETTBCCSEEEESCCCTTHHHHHHHHHHHHH
T ss_pred HHhhccccCceEEEecCCcccceEEEeccCchhHHHHHHHHHHhc
Confidence 999999999999888653332335667777788999998888654
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.88 E-value=0.21 Score=55.16 Aligned_cols=155 Identities=15% Similarity=0.123 Sum_probs=91.5
Q ss_pred EEEeecCCeEEEEeCCCCEEEEEeCCC-CEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEEC--------
Q 001380 606 LAIDILNNRLFISDSNHNRIVVTDLDG-NFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADT-------- 676 (1089)
Q Consensus 606 vavd~~~g~L~vsd~~~~~I~~~~~~g-~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~-------- 676 (1089)
+...+ ++.++..+ .+.|++++..+ +....+... . + ........++.++|||+.|.++-.
T Consensus 22 ~~W~~-d~~~~~~~--~~~~~~~~~~t~~~~~~~~~~-~--~------~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s 89 (470)
T d2bgra1 22 LRWIS-DHEYLYKQ--ENNILVFNAEYGNSSVFLENS-T--F------DEFGHSINDYSISPDGQFILLEYNYVKQWRHS 89 (470)
T ss_dssp CEECS-SSEEEEES--SSCEEEEETTTCCEEEEECTT-T--T------TTSSSCCCEEEECTTSSEEEEEEEEEECSSSC
T ss_pred CEeCC-CCEEEEEc--CCcEEEEECCCCCEEEEEchh-h--h------hhccCccceeEECCCCCEEEEEECCcceeeec
Confidence 34444 45544444 35688888874 443333322 1 0 111224578899999997666531
Q ss_pred CCCEEEEEECCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECCCcEEEEEECCCCeEEEEeCC
Q 001380 677 ENHALREIDFVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAGQHQIWEHSTVDGVTRAFSGD 756 (1089)
Q Consensus 677 ~n~~I~~~d~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~~~~I~~~~~~~g~~~~~~g~ 756 (1089)
....++.+|++++.+..+.... .....+.|+|+|..+.+.. ++.++.++..++........
T Consensus 90 ~~~~~~l~d~~~~~~~~l~~~~-----------------~~~~~~~~SPDG~~ia~~~--~~~l~~~~~~~g~~~~~t~~ 150 (470)
T d2bgra1 90 YTASYDIYDLNKRQLITEERIP-----------------NNTQWVTWSPVGHKLAYVW--NNDIYVKIEPNLPSYRITWT 150 (470)
T ss_dssp EEEEEEEEETTTTEECCSSCCC-----------------TTEEEEEECSSTTCEEEEE--TTEEEEESSTTSCCEECCSC
T ss_pred cCceEEEEECCCCcccccccCC-----------------ccccccccccCcceeeEee--cccceEEECCCCceeeeeec
Confidence 1246778999998877665322 1345788999998777653 56789999888876655433
Q ss_pred Ccccc-CCCCCC---CCccccCCceEEEcCCCCEEEEEe
Q 001380 757 GYERN-LNGSSS---LNTSFAQPSGISLSPDFMEIYVAD 791 (1089)
Q Consensus 757 g~~~~-~~g~~~---~~~~~~~P~glav~~~g~~lyvad 791 (1089)
+.... .+|... ....+....++.++|||+.|.++-
T Consensus 151 ~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~ 189 (470)
T d2bgra1 151 GKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ 189 (470)
T ss_dssp CBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred cCCCcccccccceeeeeeecCCccccEECCCCCccceeE
Confidence 22211 111110 011234567899999998886654
|
| >d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH985, a thioredoxin species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.37 E-value=0.15 Score=40.66 Aligned_cols=72 Identities=17% Similarity=0.380 Sum_probs=50.3
Q ss_pred EEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhCCCcee
Q 001380 458 LDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWP 537 (1089)
Q Consensus 458 l~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~P 537 (1089)
|..+++.|+.|.......++..++.. ....+.-|. | -.++. .|||..+|
T Consensus 4 IkVlg~gC~~C~~~~~~v~~a~~e~g-i~a~v~kv~----------------------------d-~~ei~-~ygVmstP 52 (77)
T d1iloa_ 4 IQIYGTGCANCQMLEKNAREAVKELG-IDAEFEKIK----------------------------E-MDQIL-EAGLTALP 52 (77)
T ss_dssp EEEECSSSSTTHHHHHHHHHHHHHTT-CCEEEEEEC----------------------------S-HHHHH-HHTCSSSS
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHcC-CceEEEEeC----------------------------C-HHHHH-HcCCcCCC
Confidence 34459999999999999998888764 346666661 2 23555 59999999
Q ss_pred EEEEECCCCcEEEEecCCC-chhhHHHHH
Q 001380 538 TFAVVGPNGKLLAQLAGEG-HRKDLDDLV 565 (1089)
Q Consensus 538 t~~lid~~G~i~~~~~G~~-~~~~l~~~l 565 (1089)
..++ ||+++ +.|.. +.+++.++|
T Consensus 53 alvI---dg~vv--~~G~vPs~~ei~~~L 76 (77)
T d1iloa_ 53 GLAV---DGELK--IMGRVASKEEIKKIL 76 (77)
T ss_dssp CEEE---TTEEE--ECSSCCCHHHHHHHC
T ss_pred EEEE---CCEEE--EEecCCCHHHHHHHh
Confidence 9754 56665 45643 677776654
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.11 E-value=3 Score=45.56 Aligned_cols=74 Identities=15% Similarity=0.066 Sum_probs=40.6
Q ss_pred ceeEEEecCCCEEEEEECC--C--cEEEEEECCCCeEEEEeCCCccccCCCCCCCCcccc-CCceEEEcCCCCEEEE---
Q 001380 718 PWDVCYKPINEKVYIAMAG--Q--HQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFA-QPSGISLSPDFMEIYV--- 789 (1089)
Q Consensus 718 P~~la~~~~g~~lyvad~~--~--~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~-~P~glav~~~g~~lyv--- 789 (1089)
...+.+.+++ .+++.-.. . ..|..+|..+|.++.+...... +++. ......+.++|+.+++
T Consensus 257 ~~~~~W~~d~-~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~----------~wv~~~~~~p~~~~dg~~~~fi~~ 325 (465)
T d1xfda1 257 ITMVKWATST-KVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESE----------AWLHRQNEEPVFSKDGRKFFFIRA 325 (465)
T ss_dssp EEEEEESSSS-EEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECS----------SCCCCCCCCCEECTTSCSEEEEEE
T ss_pred eeeeEEcCCC-eEEEEEEccccccceEEEEcCCCCcEEEEEEEcCC----------ceEeccCCceeEccCCCeeEEEEe
Confidence 3456777776 66655322 1 2588899999988776532211 2221 1234567888865433
Q ss_pred Ee-CCCCeEEEEEc
Q 001380 790 AD-SESSSIRALNL 802 (1089)
Q Consensus 790 ad-~~~~~I~~~~~ 802 (1089)
.+ .+.+.++.+..
T Consensus 326 se~~g~~~ly~~~~ 339 (465)
T d1xfda1 326 IPQGGRGKFYHITV 339 (465)
T ss_dssp ECCSSSSCEEEEEE
T ss_pred eeecccCceEEEEe
Confidence 22 23345565543
|
| >d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Escherichia coli [TaxId: 562]
Probab=92.98 E-value=0.056 Score=52.45 Aligned_cols=79 Identities=16% Similarity=0.361 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCccccCCCCCce-eecccccCCCEEEEEEecCCCcchhhhhhhHH---HHHHHcCCC
Q 001380 410 RIQQFVNYISDVENRKTTPIVPEFPAKLDWLNTAP-LQFRRDLKGKVVVLDFWTYCCINCMHVLPDLE---FLEKKYKDM 485 (1089)
Q Consensus 410 ~~~~~~~~~~~~~~~~~g~~~P~f~~~~~~~~g~~-~~l~~~~~gk~vll~Fwa~wC~~C~~~~p~l~---~l~~~~~~~ 485 (1089)
..+.+.+...-+...+.+..-+.|. .|+. ..+.....+++.|+.||..+||+|.+..|.|. ++.+++++
T Consensus 75 ~~~~~~~~~~~L~~k~~~~~~~~~~------eG~~Y~~l~~p~~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~- 147 (195)
T d1un2a_ 75 FVQQYADTVKYLSEKKGGGTGAQYE------DGKQYTTLEKPVAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPE- 147 (195)
T ss_dssp HHHHHHHHHHHHTC---------CC------BTTTEEECSSCCTTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCT-
T ss_pred hHHHHHHHHHHHHhCcccccCCCCC------CCCcceECCCCCCCCceEEEEEecCCccccccchhhhHHHHHHhhcCC-
Confidence 3444444333333333333444455 4543 23334456789999999999999999888775 56566654
Q ss_pred CEEEEEEeCC
Q 001380 486 PFTVVGVHSA 495 (1089)
Q Consensus 486 ~v~vi~v~~~ 495 (1089)
++.++-++++
T Consensus 148 ~v~~~~~~~~ 157 (195)
T d1un2a_ 148 GVKMTKYHVN 157 (195)
T ss_dssp TCCEEEEECS
T ss_pred CcEEEEEecC
Confidence 4666666653
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=91.68 E-value=13 Score=41.62 Aligned_cols=128 Identities=13% Similarity=0.141 Sum_probs=68.3
Q ss_pred eEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC-----CCEEEEEECC
Q 001380 614 RLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE-----NHALREIDFV 687 (1089)
Q Consensus 614 ~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~-----n~~I~~~d~~ 687 (1089)
++|+... .++|+.+|.. |+.+..+...... .+ ..... ..+.+ ++.|||.... .+.|+.+|..
T Consensus 123 ~v~~~t~-dg~l~Alda~tG~~~w~~~~~d~~---~~----~~~t~-~P~v~---~~~vivg~~~~e~~~~G~v~A~Da~ 190 (596)
T d1w6sa_ 123 LILKTQL-DGNVAALNAETGETVWKVENSDIK---VG----STLTI-APYVV---KDKVIIGSSGAELGVRGYLTAYDVK 190 (596)
T ss_dssp EEEEECT-TSEEEEEETTTCCEEEEEECCCGG---GT----CBCCS-CCEEE---TTEEEECCBCGGGTCCCEEEEEETT
T ss_pred EEEEEeC-CCCeEeeccccCceeccccccccc---cc----ccccc-CCcEE---CCeEEEeeccccccccCceEEEECC
Confidence 4555544 5788888876 8887766432110 00 00111 11222 3448886543 4789999999
Q ss_pred CCeEEEEecCCCCC------CCCCC---------------CCcccccccCCce-eEEEecCCCEEEEEECC---------
Q 001380 688 NDTVRTLAGNGTKG------SDYQG---------------GEKGTSQLLNSPW-DVCYKPINEKVYIAMAG--------- 736 (1089)
Q Consensus 688 ~g~v~~~ag~g~~~------~~~~~---------------~~~~~~~~l~~P~-~la~~~~g~~lyvad~~--------- 736 (1089)
+|++.-..-+.... ..... ........-..+| .+++|+..+.+|+....
T Consensus 191 TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r 270 (596)
T d1w6sa_ 191 TGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMR 270 (596)
T ss_dssp TCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGS
T ss_pred CCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccc
Confidence 88765332111100 00000 0000000111233 46789999999997533
Q ss_pred ------CcEEEEEECCCCeEEEE
Q 001380 737 ------QHQIWEHSTVDGVTRAF 753 (1089)
Q Consensus 737 ------~~~I~~~~~~~g~~~~~ 753 (1089)
...|..+|..+|++...
T Consensus 271 ~g~n~ys~sivAlD~~TG~~~W~ 293 (596)
T d1w6sa_ 271 PGDNKWTMTIFGRDADTGEAKFG 293 (596)
T ss_dssp CSCCTTSSEEEEEETTTCCEEEE
T ss_pred ccccccccccccccccccccccc
Confidence 45799999999987653
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.56 E-value=4.4 Score=44.05 Aligned_cols=37 Identities=11% Similarity=-0.041 Sum_probs=25.7
Q ss_pred ceEEEEccCCcEEEEe--CCC--CEEEEEeCCCCeEEEEec
Q 001380 839 PLGVYCAKNGQIYVAD--SYN--HKIKKLDPASNRVSTLAG 875 (1089)
Q Consensus 839 P~gva~~~~G~lyVaD--~~n--~~I~~~d~~~~~v~t~~g 875 (1089)
...+.+.+++++++.- ... ..|..+|..++.+.++..
T Consensus 257 ~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~ 297 (465)
T d1xfda1 257 ITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE 297 (465)
T ss_dssp EEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE
T ss_pred eeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEE
Confidence 3457788888877653 222 357788999998888754
|
| >d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: NLI interacting factor-like phosphatase domain: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.70 E-value=0.061 Score=51.53 Aligned_cols=91 Identities=8% Similarity=0.045 Sum_probs=69.4
Q ss_pred CCCccHHHHHHHHHhCCCeEEEEcCCChHhHHHHHHHCCCCCCCccEEEEcCCccCCCCCHHHHHHHHHHcCCCCCcEEE
Q 001380 165 IGFPGALELINQCKSKGLKVAVASSADRIKVDANLAAAGLPVSMFDAIVSADAFENLKPAPDIFLSASKILNVPTSECIV 244 (1089)
Q Consensus 165 ~~~pG~~~lL~~Lk~~Gi~vaIvSn~~~~~~~~~l~~~gl~~~~fd~i~~~~~~~~~KP~~~~~~~~l~~lgv~p~~~v~ 244 (1089)
...||+.++|+.+.+. +.++|.|.+.++.++.+++.+.-. ..+...+..+.....+.. +.+-++.+|-+.+++|+
T Consensus 55 ~~RP~l~eFL~~l~~~-yei~I~Ta~~~~YA~~il~~ldp~-~~~~~~~~r~~c~~~~~~---~~KdL~~l~~~l~~vvi 129 (181)
T d1ta0a_ 55 LKRPHVDEFLQRMGEL-FECVLFTASLAKYADPVADLLDKW-GAFRARLFRESCVFHRGN---YVKDLSRLGRDLRRVLI 129 (181)
T ss_dssp EECTTHHHHHHHHHHH-SEEEEECSSCHHHHHHHHHHHCSS-CCEEEEECGGGSEEETTE---EECCGGGSCSCGGGEEE
T ss_pred ecCCCHHHHHHHHHhc-eEEEEEcCCcHHHHHHHHHHhccC-CceeEEEEeeeeeecCCc---ccccHhhcCCCHHHeEE
Confidence 4689999999999988 999999999999999999999885 777777766543322221 22446677888899999
Q ss_pred EcCChhhHHHHHHcCC
Q 001380 245 IEDALAGVQAAKAAQM 260 (1089)
Q Consensus 245 VGD~~~Di~aA~~aG~ 260 (1089)
|.|+..-...-...|+
T Consensus 130 vDd~~~~~~~~~~N~I 145 (181)
T d1ta0a_ 130 LDNSPASYVFHPDNAV 145 (181)
T ss_dssp ECSCGGGGTTCGGGBC
T ss_pred EcCChhhhhcCccCee
Confidence 9999865544344554
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.26 E-value=17 Score=40.46 Aligned_cols=73 Identities=10% Similarity=0.142 Sum_probs=48.6
Q ss_pred CCeEEEEeCCCCEEEEEeCC-CCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECCCCEEEEEECCCCe
Q 001380 612 NNRLFISDSNHNRIVVTDLD-GNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNDT 690 (1089)
Q Consensus 612 ~g~L~vsd~~~~~I~~~~~~-g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~n~~I~~~d~~~g~ 690 (1089)
+|.||+++. +++|+-+|.+ |+.+.++........ ....-....|+++. ++.+|+.+. ++.+..+|.++|+
T Consensus 68 ~g~vy~~t~-~~~v~AlDa~TG~~lW~~~~~~~~~~-----~~~~~~~~rg~a~~--~~~i~~~t~-~~~l~alda~tG~ 138 (582)
T d1flga_ 68 DGVIYVTAS-YSRLFALDAKTGKRLWTYNHRLPDDI-----RPCCDVVNRGAAIY--GDKVFFGTL-DASVVALNKNTGK 138 (582)
T ss_dssp TTEEEEEET-TTEEEEEESSSCCEEEEEECCCCTTC-----CCSSCSCCCCCEEE--TTEEEEEET-TTEEEEEESSSCC
T ss_pred CCEEEEeCC-CCeEEEEeCCCCCeEEEEcCCCCCcc-----ccccccccCCceEe--CCceEEecC-CCeEEEecccccc
Confidence 789999986 5789999986 999887643311111 11111233677775 345888764 5679999999887
Q ss_pred EEE
Q 001380 691 VRT 693 (1089)
Q Consensus 691 v~~ 693 (1089)
+.-
T Consensus 139 ~~W 141 (582)
T d1flga_ 139 VVW 141 (582)
T ss_dssp EEE
T ss_pred eee
Confidence 653
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=89.86 E-value=4.8 Score=41.88 Aligned_cols=173 Identities=11% Similarity=0.097 Sum_probs=96.1
Q ss_pred ceeEEEecCCCEEEEEECCC-----------cEEEEEECCCCeEEEEeCCCccccCCCCCCCCccccCCceEEEcCCCCE
Q 001380 718 PWDVCYKPINEKVYIAMAGQ-----------HQIWEHSTVDGVTRAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFME 786 (1089)
Q Consensus 718 P~~la~~~~g~~lyvad~~~-----------~~I~~~~~~~g~~~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~ 786 (1089)
+...++-+.+++||+..... ..+..||+.+++........ ...-....+.++.++| .
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~-----------~~~~~~~~~~~~~~~g-~ 88 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV-----------TKHDMFCPGISMDGNG-Q 88 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE-----------CSCCCSSCEEEECTTS-C
T ss_pred ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCC-----------CCcccceeEEEEecCC-c
Confidence 33455555556777753311 13667888877654322110 0111124577888888 7
Q ss_pred EEEEe-CCCCeEEEEEcCCCCeEEEecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeC------CCCE
Q 001380 787 IYVAD-SESSSIRALNLKTGGSRLLAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADS------YNHK 859 (1089)
Q Consensus 787 lyvad-~~~~~I~~~~~~~~~~~~~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~------~n~~ 859 (1089)
+|+.- .....+.++++.++....+... + ..+ .-.+.++..||++|+.-- ..+.
T Consensus 89 i~v~Gg~~~~~~~~yd~~~~~w~~~~~~-~-----------------~~r--~~~~~~~~~dG~v~v~GG~~~~~~~~~~ 148 (387)
T d1k3ia3 89 IVVTGGNDAKKTSLYDSSSDSWIPGPDM-Q-----------------VAR--GYQSSATMSDGRVFTIGGSWSGGVFEKN 148 (387)
T ss_dssp EEEECSSSTTCEEEEEGGGTEEEECCCC-S-----------------SCC--SSCEEEECTTSCEEEECCCCCSSSCCCC
T ss_pred EEEeecCCCcceeEecCccCcccccccc-c-----------------ccc--cccceeeecCCceeeeccccccccccce
Confidence 77765 3456899999987666543210 0 000 112466667999998853 2356
Q ss_pred EEEEeCCCCeEEEEeccCCCCC--CCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEeCCCC
Q 001380 860 IKKLDPASNRVSTLAGIGKAGF--KDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLDLNKE 923 (1089)
Q Consensus 860 I~~~d~~~~~v~t~~g~g~~g~--~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~~~~~ 923 (1089)
+.++|+.++.-+.+......-. ..+......-..+ -+....+|++|+.......+..++....
T Consensus 149 v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~G~~~~~g~~~~~~~~~~~~~~ 213 (387)
T d1k3ia3 149 GEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHA-WLFGWKKGSVFQAGPSTAMNWYYTSGSG 213 (387)
T ss_dssp EEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSC-CEEECGGGCEEECCSSSEEEEEECSTTC
T ss_pred eeeecCCCCceeecCCCcccccccccccceeecccee-EEEEeCCCCEEEecCcCCcEEecCcccC
Confidence 8999999998777653321100 0110000011112 2333356788888877777888777765
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=89.71 E-value=5.8 Score=37.40 Aligned_cols=23 Identities=4% Similarity=0.091 Sum_probs=17.9
Q ss_pred EEEEEECCCcEEEEEECCCCeEE
Q 001380 729 KVYIAMAGQHQIWEHSTVDGVTR 751 (1089)
Q Consensus 729 ~lyvad~~~~~I~~~~~~~g~~~ 751 (1089)
.+|++|...+.+..+++..|.+.
T Consensus 168 sfF~adl~SG~lri~tpkeGS~~ 190 (313)
T d2hu7a1 168 SLFTSNLSSGGLRVFDSGEGSFS 190 (313)
T ss_dssp EEEEEETTTEEEEEECCSSEEEE
T ss_pred eEEEEecccCCEEEecCCCCccc
Confidence 58888888888888888766544
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.58 E-value=18 Score=40.03 Aligned_cols=33 Identities=15% Similarity=0.279 Sum_probs=23.5
Q ss_pred ceEEEeecCCeEEEEeCCCCEEEEEeCC-CCEEEEEe
Q 001380 604 GKLAIDILNNRLFISDSNHNRIVVTDLD-GNFIVQIG 639 (1089)
Q Consensus 604 ~~vavd~~~g~L~vsd~~~~~I~~~~~~-g~~~~~i~ 639 (1089)
.++++. ++++|+... .++++.+|.. |+.+....
T Consensus 111 rg~a~~--~~~i~~~t~-~~~l~alda~tG~~~W~~~ 144 (582)
T d1flga_ 111 RGAAIY--GDKVFFGTL-DASVVALNKNTGKVVWKKK 144 (582)
T ss_dssp CCCEEE--TTEEEEEET-TTEEEEEESSSCCEEEEEE
T ss_pred CCceEe--CCceEEecC-CCeEEEecccccceeeeec
Confidence 456665 688998876 4678888876 88775443
|
| >d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=88.43 E-value=0.72 Score=41.07 Aligned_cols=90 Identities=10% Similarity=0.083 Sum_probs=65.6
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.++++++.|+..- .........+.+++++|+++ +.++.+.. +......+.|
T Consensus 22 ~~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~k-i~Fv~vd~---------------------------~~~~~~l~~~ 72 (133)
T d2djka1 22 AGIPLAYIFAETA-EERKELSDKLKPIAEAQRGV-INFGTIDA---------------------------KAFGAHAGNL 72 (133)
T ss_dssp TTSCEEEEECSCS-SSHHHHHHHHHHHHHSSTTT-SEEEEECT---------------------------TTTGGGTTTT
T ss_pred CCCCEEEEEeCCc-hHHHHHHHHHHHHHHHhcCc-eEEEEEeH---------------------------HHhHHHHHHh
Confidence 4677777777543 35677788999999999875 77777732 1223556667
Q ss_pred CC--CceeEEEEECCCCcEEEEe--cCCCchhhHHHHHHHHHH
Q 001380 532 GV--NSWPTFAVVGPNGKLLAQL--AGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 532 ~v--~~~Pt~~lid~~G~i~~~~--~G~~~~~~l~~~l~~~l~ 570 (1089)
|+ ...|..++++.++...+.+ .+..+.+.+.++++..++
T Consensus 73 gl~~~~~P~~~i~~~~~~~~~~~~~~~~i~~~~i~~Fi~d~~~ 115 (133)
T d2djka1 73 NLKTDKFPAFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVA 115 (133)
T ss_dssp TCCSSSSSEEEEECTTTCCBCCCCSSSCCCHHHHHHHHHHHHH
T ss_pred cCCcccCCcEEEEEcCCCceecCCccccCCHHHHHHHHHHHHc
Confidence 87 4689999998887766654 346688999999988876
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=88.34 E-value=22 Score=39.21 Aligned_cols=136 Identities=10% Similarity=0.077 Sum_probs=73.4
Q ss_pred eEEEeecCCeEEEEeCCCCEEEEEeC-CCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeCCCEEEEEECC-----C
Q 001380 605 KLAIDILNNRLFISDSNHNRIVVTDL-DGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAKKNLLYVADTE-----N 678 (1089)
Q Consensus 605 ~vavd~~~g~L~vsd~~~~~I~~~~~-~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~g~~lyVaD~~-----n 678 (1089)
++++. ++++|+.+. .++|+.+|. +|+.+......+... ...... ..+.+ ++ .+++.... .
T Consensus 112 ~~~~~--~~~v~~~~~-~g~l~Alda~tG~~~w~~~~~~~~~-------~~~~~~-~p~v~--~~-~vivg~~~~~~~~~ 177 (560)
T d1kv9a2 112 GVALW--GDKVYVGTL-DGRLIALDAKTGKAIWSQQTTDPAK-------PYSITG-APRVV--KG-KVIIGNGGAEYGVR 177 (560)
T ss_dssp CCEEE--BTEEEEECT-TSEEEEEETTTCCEEEEEECSCTTS-------SCBCCS-CCEEE--TT-EEEECCBCTTTCCB
T ss_pred Cccee--CCeEEEEeC-CCEEEEEECCCCcEEeccCccCccc-------ceeeee-eeeee--cC-cccccccceecccc
Confidence 34444 677888775 468888886 588887765432110 001111 11222 33 36664322 3
Q ss_pred CEEEEEECCCCeEEEEecCCCCCCCCCCC-------------Cccc-ccccCCce-eEEEecCCCEEEEEECC-------
Q 001380 679 HALREIDFVNDTVRTLAGNGTKGSDYQGG-------------EKGT-SQLLNSPW-DVCYKPINEKVYIAMAG------- 736 (1089)
Q Consensus 679 ~~I~~~d~~~g~v~~~ag~g~~~~~~~~~-------------~~~~-~~~l~~P~-~la~~~~g~~lyvad~~------- 736 (1089)
+.|+.+|..+|++.--.-+.......... .... ...-...| .+++|+..+.+|+....
T Consensus 178 G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~ 257 (560)
T d1kv9a2 178 GFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNRE 257 (560)
T ss_dssp CEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHH
T ss_pred ceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccc
Confidence 57999999988766544332211100000 0000 00001222 37889999999986522
Q ss_pred -----------CcEEEEEECCCCeEEEEe
Q 001380 737 -----------QHQIWEHSTVDGVTRAFS 754 (1089)
Q Consensus 737 -----------~~~I~~~~~~~g~~~~~~ 754 (1089)
...|+.+|..+|++....
T Consensus 258 ~~~~~~g~n~~s~sivAld~~tG~~~W~~ 286 (560)
T d1kv9a2 258 VRSPGGGDNLYLSSILAIRPDTGKLAWHY 286 (560)
T ss_dssp HHSTTCCCCTTTTEEEEECTTTCCEEEEE
T ss_pred cccccCCccccceeeEEecCCccceeEEE
Confidence 457999999999887654
|
| >d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.95 E-value=0.41 Score=40.85 Aligned_cols=61 Identities=20% Similarity=0.247 Sum_probs=36.2
Q ss_pred EEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhCCCce
Q 001380 457 VLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSW 536 (1089)
Q Consensus 457 ll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~ 536 (1089)
|+.|..+|||+|...-..|.++.-+ ...+.++-+ +...+.+.+++++ .+..|...+
T Consensus 14 Vviysk~~Cp~C~~ak~ll~~~~~~--~~~~~~~e~-----d~~~d~~~~~~~l-----------------~~~~g~~tv 69 (105)
T d1ktea_ 14 VVVFIKPTCPFCRKTQELLSQLPFK--EGLLEFVDI-----TATSDTNEIQDYL-----------------QQLTGARTV 69 (105)
T ss_dssp EEEEECSSCHHHHHHHHHHHHSCBC--TTSEEEEEG-----GGSTTHHHHHHHH-----------------HHHHSCCCS
T ss_pred EEEEECCCCchHHHHHHHHHHhCCc--cceeeeeec-----ccccccHHHHHHH-----------------hhccCCCcC
Confidence 3467789999999887777654322 223555555 2233344444433 234566788
Q ss_pred eEEEE
Q 001380 537 PTFAV 541 (1089)
Q Consensus 537 Pt~~l 541 (1089)
|..|+
T Consensus 70 PqIfi 74 (105)
T d1ktea_ 70 PRVFI 74 (105)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 98865
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.70 E-value=12 Score=35.69 Aligned_cols=132 Identities=17% Similarity=0.138 Sum_probs=69.0
Q ss_pred EEEECCCcEEEEEECCCCeE-EEEeCCCccccCCCCCCCCccccCCceEEEcCCCCEEEEEeCCCCeEEEEEcCCCCeEE
Q 001380 731 YIAMAGQHQIWEHSTVDGVT-RAFSGDGYERNLNGSSSLNTSFAQPSGISLSPDFMEIYVADSESSSIRALNLKTGGSRL 809 (1089)
Q Consensus 731 yvad~~~~~I~~~~~~~g~~-~~~~g~g~~~~~~g~~~~~~~~~~P~glav~~~g~~lyvad~~~~~I~~~~~~~~~~~~ 809 (1089)
.++....+.|..+|..++.. ..+.+.. ..-..+..++.. +++-...+.|+.++..+.....
T Consensus 151 ~~~~s~d~~i~~~d~~~~~~~~~~~~~~-----------------~~v~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~ 212 (293)
T d1p22a2 151 IVSASGDRTIKVWNTSTCEFVRTLNGHK-----------------RGIACLQYRDRL-VVSGSSDNTIRLWDIECGACLR 212 (293)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCS-----------------SCEEEEEEETTE-EEEEETTSCEEEEETTTCCEEE
T ss_pred cccccCCCceeeecCCCCcEEEEEcccc-----------------cccccccCCCCe-EEEecCCCEEEEEecccceeee
Confidence 34445577888888877654 3343211 011122333424 4455556789999887655432
Q ss_pred EecCCCCCCCCccccCCCCCccccccccCceEEEEccCCcEEEEeCCCCEEEEEeCCC----------CeEEEEeccCCC
Q 001380 810 LAGGDPIFPDNLFKFGDRDGMGSEVLLQHPLGVYCAKNGQIYVADSYNHKIKKLDPAS----------NRVSTLAGIGKA 879 (1089)
Q Consensus 810 ~~g~~~~~~~~l~~~g~~dg~~~~~~l~~P~gva~~~~G~lyVaD~~n~~I~~~d~~~----------~~v~t~~g~g~~ 879 (1089)
...+ .. .+ -..+..++..+++-...+.|+.+|..+ ..+.++.+.
T Consensus 213 ~~~~------------~~----------~~-v~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H--- 266 (293)
T d1p22a2 213 VLEG------------HE----------EL-VRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH--- 266 (293)
T ss_dssp EECC------------CS----------SC-EEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC---
T ss_pred eecc------------cc----------ee-eeeccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCC---
Confidence 2111 00 01 123445666667767778888886321 223333321
Q ss_pred CCCCCcccccccCCCceEEEccCCcEEEEECCCCEEEEEe
Q 001380 880 GFKDGAALAAQLSEPAGIIEAQNGNLFIADTNNNIIRYLD 919 (1089)
Q Consensus 880 g~~~g~~~~~~l~~P~gi~vd~~G~lyVad~~n~~I~~~~ 919 (1089)
-..-.+++++ ++.+++-..++.|++.|
T Consensus 267 -----------~~~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 267 -----------SGRVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp -----------SSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred -----------CCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence 1223566665 45566666677887654
|
| >d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Corynebacterium ammoniagenes [TaxId: 1697]
Probab=85.92 E-value=0.7 Score=36.35 Aligned_cols=21 Identities=14% Similarity=0.363 Sum_probs=16.5
Q ss_pred EEEEecCCCcchhhhhhhHHH
Q 001380 457 VLDFWTYCCINCMHVLPDLEF 477 (1089)
Q Consensus 457 ll~Fwa~wC~~C~~~~p~l~~ 477 (1089)
|.-|..+||++|......|.+
T Consensus 3 v~iYt~~~C~~C~~ak~~L~~ 23 (74)
T d1r7ha_ 3 ITLYTKPACVQCTATKKALDR 23 (74)
T ss_dssp EEEEECTTCHHHHHHHHHHHH
T ss_pred EEEEeCCCChhHHHHHHHHHH
Confidence 456778999999988777754
|
| >d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli [TaxId: 562]
Probab=84.38 E-value=0.67 Score=37.64 Aligned_cols=34 Identities=24% Similarity=0.236 Sum_probs=26.2
Q ss_pred EEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEE
Q 001380 457 VLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGV 492 (1089)
Q Consensus 457 ll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v 492 (1089)
++-|-.+||++|...-..|.++..++++ +.+.-+
T Consensus 3 vviysk~~Cp~C~~aK~ll~~~~~~~~~--i~~~~~ 36 (85)
T d1egoa_ 3 TVIFGRSGCPYCVRAKDLAEKLSNERDD--FQYQYV 36 (85)
T ss_dssp EEEECCTTSTHHHHHHHHHHHHHHHHSS--CEEEEE
T ss_pred EEEEeCCCCHhHHHHHHHHHHcCCCCCC--ceEEEE
Confidence 3556789999999999999998888774 444444
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=82.85 E-value=40 Score=37.26 Aligned_cols=182 Identities=15% Similarity=0.122 Sum_probs=101.2
Q ss_pred CCeEEEEeCCCCEEEEEeC--CCCEEEEEecCCCCCCCCCCCCccccCCcceeEEeeC----CCEEEEEECCCCEEEEEE
Q 001380 612 NNRLFISDSNHNRIVVTDL--DGNFIVQIGSSGEEGLRDGSFDDATFNRPQGLAYNAK----KNLLYVADTENHALREID 685 (1089)
Q Consensus 612 ~g~L~vsd~~~~~I~~~~~--~g~~~~~i~~~g~~g~~dG~~~~~~f~~P~gla~d~~----g~~lyVaD~~n~~I~~~d 685 (1089)
+|.|||+....++++.++. .|+.+.++.......... ....-..-+|+++-+. +.+||+.+ .+.+|..+|
T Consensus 62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~---~~~~~~~~RGv~~~~~~~~~~~~v~~~t-~dg~l~Ald 137 (596)
T d1w6sa_ 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARA---VACCDLVNRGLAYWPGDGKTPALILKTQ-LDGNVAALN 137 (596)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGG---GCSSCSCCCCCEEECCCSSSCCEEEEEC-TTSEEEEEE
T ss_pred CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCccccc---ccccccccceeEEecCCCCCceEEEEEe-CCCCeEeec
Confidence 7899998776677888874 499998875432111000 0000112368888543 23466664 467899999
Q ss_pred CCCCeEEEEecCCCCCCCCCCCCcccccccCCceeEEEecCCCEEEEEECC-----CcEEEEEECCCCeEEE-EeCCCcc
Q 001380 686 FVNDTVRTLAGNGTKGSDYQGGEKGTSQLLNSPWDVCYKPINEKVYIAMAG-----QHQIWEHSTVDGVTRA-FSGDGYE 759 (1089)
Q Consensus 686 ~~~g~v~~~ag~g~~~~~~~~~~~~~~~~l~~P~~la~~~~g~~lyvad~~-----~~~I~~~~~~~g~~~~-~~g~g~~ 759 (1089)
..+|++.--...+.... ...+.++ .+.+ ++.+||...+ .+.|+.||..+|++.. +......
T Consensus 138 a~tG~~~w~~~~~d~~~---------~~~~t~~-P~v~---~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~ 204 (596)
T d1w6sa_ 138 AETGETVWKVENSDIKV---------GSTLTIA-PYVV---KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPD 204 (596)
T ss_dssp TTTCCEEEEEECCCGGG---------TCBCCSC-CEEE---TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCH
T ss_pred cccCceecccccccccc---------ccccccC-CcEE---CCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCc
Confidence 99887665543331100 0011111 1222 3588887654 3789999999997753 3211100
Q ss_pred c------c------C-----------CCCCCCCccccCCceEEEcCCCCEEEEEeCC---------------CCeEEEEE
Q 001380 760 R------N------L-----------NGSSSLNTSFAQPSGISLSPDFMEIYVADSE---------------SSSIRALN 801 (1089)
Q Consensus 760 ~------~------~-----------~g~~~~~~~~~~P~glav~~~g~~lyvad~~---------------~~~I~~~~ 801 (1089)
. . . .+..-....-..=..+++|++.+.+|+.... +++|..++
T Consensus 205 ~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD 284 (596)
T d1w6sa_ 205 KDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRD 284 (596)
T ss_dssp HHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEE
T ss_pred cccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccc
Confidence 0 0 0 0000000000001256888888899987543 46799999
Q ss_pred cCCCCeEEE
Q 001380 802 LKTGGSRLL 810 (1089)
Q Consensus 802 ~~~~~~~~~ 810 (1089)
.++|...-.
T Consensus 285 ~~TG~~~W~ 293 (596)
T d1w6sa_ 285 ADTGEAKFG 293 (596)
T ss_dssp TTTCCEEEE
T ss_pred ccccccccc
Confidence 999887653
|
| >d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein XCC2852 species: Xanthomonas campestris [TaxId: 339]
Probab=81.45 E-value=3.5 Score=32.26 Aligned_cols=70 Identities=19% Similarity=0.185 Sum_probs=39.8
Q ss_pred EEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHhCCCcee
Q 001380 458 LDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWRELGVNSWP 537 (1089)
Q Consensus 458 l~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v~~~P 537 (1089)
.-|-.++|+.|......|. + .....+..+-| +.+.++..+|+.. +|
T Consensus 3 tLyt~~~C~LCe~A~~~l~---~-~~~~~~~~vdI-----------------------------~~d~~l~~~y~~~-IP 48 (75)
T d1ttza_ 3 TLYQRDDCHLCDQAVEALA---Q-ARAGAFFSVFI-----------------------------DDDAALESAYGLR-VP 48 (75)
T ss_dssp EEEECSSCHHHHHHHHHHH---H-TTCCCEEEEEC-----------------------------TTCHHHHHHHTTT-CS
T ss_pred EEECCCCccHHHHHHHHHH---h-ccCCcEEEEEc-----------------------------cCCHHHHHHhCCe-ee
Confidence 3456899999976543332 2 22233555544 3455677778765 68
Q ss_pred EEEEECCCCcEEEEecCCCchhhHHHHHH
Q 001380 538 TFAVVGPNGKLLAQLAGEGHRKDLDDLVE 566 (1089)
Q Consensus 538 t~~lid~~G~i~~~~~G~~~~~~l~~~l~ 566 (1089)
.+ ++| ++..... ..+.+++.++|.
T Consensus 49 Vl-~~~-~~~~l~w---~fd~~~l~~~L~ 72 (75)
T d1ttza_ 49 VL-RDP-MGRELDW---PFDAPRLRAWLD 72 (75)
T ss_dssp EE-ECT-TCCEEES---CCCHHHHHHHHH
T ss_pred EE-EEC-CeeEEcC---ccCHHHHHHHHh
Confidence 43 343 4444332 456777777764
|
| >d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Atu2684-like domain: Hypothetical protein Atu2684 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=81.21 E-value=1.4 Score=43.05 Aligned_cols=95 Identities=19% Similarity=0.142 Sum_probs=55.5
Q ss_pred EEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChh--cHHHHHHHHHHcCCccceeecCChhHHHHhCC
Q 001380 456 VVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEK--DLEAIRNAVLRYGISHPVVNDGDMNLWRELGV 533 (1089)
Q Consensus 456 vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~~v 533 (1089)
||=.|-+.||..|......|.+|.++ .+|..|++|++..++-. |+-.. +...+-+...++.++.
T Consensus 8 VVElFTSqgCssCPpAd~~L~~L~~~---~~Vi~La~HVdYWd~lGw~D~fa~-----------~~~t~RQ~~Y~~~~g~ 73 (225)
T d2axoa1 8 VVELFTSQGCASCPPADEALRKMIQK---GDVVGLSYHVDYWNYLGWTDSLAS-----------KENTERQYGYMRALGR 73 (225)
T ss_dssp EEEEEECTTCTTCHHHHHHHHHHHHH---TSSEEEEEECSTTCSSSSCCTTCC-----------HHHHHHHHHHHHHTTC
T ss_pred EEEEeeCCCCCCCHHHHHHHHHhhCC---CCEEEEEeccccccccCCCCCCCC-----------chhhHHHHHHHHhcCC
Confidence 44456688999999999999999775 46999999996433311 11000 0111112345566677
Q ss_pred Ccee--EEEEECCCCcEEEEecCCCchhhHHHHHHHHHH
Q 001380 534 NSWP--TFAVVGPNGKLLAQLAGEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 534 ~~~P--t~~lid~~G~i~~~~~G~~~~~~l~~~l~~~l~ 570 (1089)
..+| ..+ | +|+.-.. ......+...|...++
T Consensus 74 ~~vyTPq~v-v--nG~~~~~---gs~~~~~~~~i~~~~~ 106 (225)
T d2axoa1 74 NGVYTPQAI-L--NGRDHVK---GADVRGIYDRLDAFKR 106 (225)
T ss_dssp SCCCSSEEE-E--TTTEEEE---TTCHHHHHHHHHHHHH
T ss_pred CCCCceeEE-E--eCccccc---ccCHHHHHHHHHHHhh
Confidence 6644 444 4 4543222 3456777777766554
|
| >d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.31 E-value=2.3 Score=37.08 Aligned_cols=90 Identities=19% Similarity=0.155 Sum_probs=64.2
Q ss_pred CCCEEEEEEecCCCcchhhhhhhHHHHHHHcCCCCEEEEEEeCCCCCChhcHHHHHHHHHHcCCccceeecCChhHHHHh
Q 001380 452 KGKVVVLDFWTYCCINCMHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEKDLEAIRNAVLRYGISHPVVNDGDMNLWREL 531 (1089)
Q Consensus 452 ~gk~vll~Fwa~wC~~C~~~~p~l~~l~~~~~~~~v~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~l~~~~ 531 (1089)
.|+++++.|+.+-- .-......+.+++++|+++ +.++-+.. +.....++.|
T Consensus 16 ~~~Pl~~~f~~~~~-~~~~~~~~~~~vAk~fkgk-i~Fv~~D~---------------------------~~~~~~l~~f 66 (125)
T d2b5ea3 16 SGLPLGYLFYNDEE-ELEEYKPLFTELAKKNRGL-MNFVSIDA---------------------------RKFGRHAGNL 66 (125)
T ss_dssp TTSCEEEEEESSHH-HHHHHHHHHHHHHHHTTTT-CEEEEEEH---------------------------HHHTTHHHHT
T ss_pred cCCCEEEEEeCChH-HHHHHHHHHHHHHHHhcCe-eEEEEEch---------------------------HHhHHHHHHc
Confidence 57888888887532 2335677888899999875 77777632 1233566778
Q ss_pred CCC-ceeEEEEECCCCcEEEEec-------------CCCchhhHHHHHHHHHH
Q 001380 532 GVN-SWPTFAVVGPNGKLLAQLA-------------GEGHRKDLDDLVEAALL 570 (1089)
Q Consensus 532 ~v~-~~Pt~~lid~~G~i~~~~~-------------G~~~~~~l~~~l~~~l~ 570 (1089)
|+. .+|...+++.+....+.+. ++.+.+.+.++++..++
T Consensus 67 gl~e~~P~~~i~~~~~~~ky~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~l~ 119 (125)
T d2b5ea3 67 NMKEQFPLFAIHDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLK 119 (125)
T ss_dssp TCCSCSSEEEEEETTTTEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHH
T ss_pred CCCccCCcEEEEecccCcccccchhhhhhcccccccccCCHHHHHHHHHHHHc
Confidence 874 4899999887777666643 56788999999988775
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=80.12 E-value=47 Score=36.35 Aligned_cols=85 Identities=13% Similarity=0.170 Sum_probs=47.9
Q ss_pred CCeEEEEeCC-----CCEEEEEeCC-CCEEEEEecCCCCCCCC--------C--CCCc--cccCCc------ceeEEeeC
Q 001380 612 NNRLFISDSN-----HNRIVVTDLD-GNFIVQIGSSGEEGLRD--------G--SFDD--ATFNRP------QGLAYNAK 667 (1089)
Q Consensus 612 ~g~L~vsd~~-----~~~I~~~~~~-g~~~~~i~~~g~~g~~d--------G--~~~~--~~f~~P------~gla~d~~ 667 (1089)
++.++|.... .+.|.-+|.. |+.+..+......+... + .... ...... ...++|++
T Consensus 174 ~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~~ 253 (573)
T d1kb0a2 174 KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE 253 (573)
T ss_dssp TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETT
T ss_pred eccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCCceeecCCCCcccccceEchh
Confidence 5667665432 3578889886 88887764432111100 0 0000 000001 23678888
Q ss_pred CCEEEEEEC------------------CCCEEEEEECCCCeEEEEec
Q 001380 668 KNLLYVADT------------------ENHALREIDFVNDTVRTLAG 696 (1089)
Q Consensus 668 g~~lyVaD~------------------~n~~I~~~d~~~g~v~~~ag 696 (1089)
.+.+|+.-. ....|..+|.++|++.-...
T Consensus 254 ~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q 300 (573)
T d1kb0a2 254 LNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQ 300 (573)
T ss_dssp TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE
T ss_pred hCeeeeccCCCccccccccccccccccccceEEEecccchheeeccc
Confidence 887887531 23478899999998877653
|