Citrus Sinensis ID: 001398

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080-----

MGFEKSDSCPCRRVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSLPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLSSPDFRLHACEFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDISGAILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDTSFMWSLFHTVTFFERALKRSGIRKANLNLQSSSAENSAVMHPMASHLSWMLPPLLKLLRAIHSIWSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQLDTSKEGYGEPNESDIRNWLKGVRDSGYNVLGLSATIGDPFFKSLDSGSVVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHEVAGSDLKVEVMEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFYRVDVLSLKDLDAFASNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKTASPREQKQHMRSLLVLGTGNNLKALAAQKSVNVITNVSTRPRSSDNAPESRTEEGESIGLAAIS

cccccHHHHHHHHHHHHHHcHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccHHHHHccHHHHHHHHcccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHccccHHHHHHccccHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcHHcHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccccccccccccccccccccccccc

ccccccccEEEEEEEcccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHccccccHcHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHEHHHHHHHHHHHHHccccccccccccccccHHccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccHcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHcHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHcHHHHHHHHcccccccccccEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHccccccHHHHHHHHHcHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHcHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHcccccEEEccccccccccccccccccccccccHHHcc

mgfeksdscpcrrvrREGINLWQELFPSLvslsskgpIQAELVSMMLRWlpeditvhnedlegDRRRLLLRGLTQSLPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAyaewaplpdlakygiihgcgfllsspdfrlHACEffklvsprkgpadasASEFESAMHDVFQILMKVSGEFlyrsgtsagaidesEFEFAEYICESMVSLGTSNLHCIAREDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTkvahstgdgstvnnadsgsgkvdsrKMRILSFLNDDISGAILDISFQRLVkrekapgtqgplelwsddfegkgdFSQYRSRLLELVKFVasnkplvagvKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVfdgsnqfggansEVQLSLSRIFEGLLRQLLSlkwtepplvVALGHYLDALgpflkyypdaVGGVISKLFELLTslpfvfkdpstnsarHARLQICTSFIRIAktsdksilpHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNnylseplglvrlcsdtSFMWSLFHTVTFFERALKRSGIRKanlnlqsssaensavmhpmashlswmlpPLLKLLRAIHSiwspsisqllPGEIKAAMTMSDAEQfsllgegnpkfsrgavafadgsqldtskegygepnesdIRNWLKgvrdsgynvlglsatigdpffksldSGSVVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHEVAGSDLKVEVMEEKLLRDLTREICSLLSTMAssglnngippieqsghfyrvdvlslkdldafasNSMVGFLLKHKDLALPALQISLEaftwtdgeavTKVSSFCSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMcdrdpaprqvllslpcitpqdLLAFEDALtktaspreqKQHMRSLLVLGTGNNLKALAAQksvnvitnvstrprssdnapesrteegesiglaais

mgfeksdscpcrrVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSLPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLSSPDFRLHACEFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVahstgdgstvnnadsgsgkvdSRKMRILSflnddisgaILDISFQRLVKREkapgtqgplelwsddfegKGDFSQYRSRLLELVKFVasnkplvagvkvSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIaktsdksilpHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDTSFMWSLFHTVTFFERALKRSGIRKANLNLQSSSAENSAVMHPMASHLSWMLPPLLKLLRAIHSIWSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSqldtskegygepnesDIRNWLKGVRDSGYNVLGLSATIGDPFFKSLDSGSVVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHEVAGSDLKVEVMEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFYRVDVLSLKDLDAFASNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKTASPREQKQHMRSLLVLGTGNNLKALaaqksvnvitnvstrprssdnapesrteegesiglaais

MGFEKSDSCPCRRVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHNedlegdrrrlllrglTQslpeilpllyslleRHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLSSPDFRLHACEFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDISGAILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDTSFMWSLFHTVTFFERALKRSGIRKANLNLQSSSAENSAVMHPMASHLSWMlppllkllRAIHSIWSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQLDTSKEGYGEPNESDIRNWLKGVRDSGYNVLGLSATIGDPFFKSLDSGSVVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHEVAGSDLKVEVMEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFYRVDVLSLKDLDAFASNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKTASPREQKQHMRSLLVLGTGNNLKALAAQKSVNVITNVSTRPRSSDNAPESRTEEGESIGLAAIS

**********CRRVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSLPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLSSPDFRLHACEFFKLVS***************AMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLM******************************RILSFLNDDISGAILDISFQRLVKR*******GPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDTSFMWSLFHTVTFFERALKRSGIR*******************MASHLSWMLPPLLKLLRAIHSIWSPSISQLLPGEIKA***********************************************IRNWLKGVRDSGYNVLGLSATIGDPFFKSLDSGSVVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHEVAGSDLKVEVMEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFYRVDVLSLKDLDAFASNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDAL***************LLVLGTGNNLKALAAQKSVNVI******************************

**FEKSDSCPCRRVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHNEDLE**RRRLLLRGLTQSLPEILPLLYSLLERHFGAALSEVG**********AATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLSSPDFRLHACEFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNA*************ILSFLNDDISGAILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQ**********SLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFV*********RHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDTSFMWSLFHTVTFFERALKR******************AVMHPMASHLSWMLPPLLKLLRAIHSIWSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQ**********PNESDIRNWLKGVRDSGYNVLGLSATIGDPFFKSLDSGSVVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHE********EVMEEKLLRDLTREICSLLSTMA************************************VGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFE***************MRSLLVLGTG*******************************************I*

**********CRRVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSLPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLSSPDFRLHACEFFKLVS************FESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKT********GSTVN*********DSRKMRILSFLNDDISGAILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDTSFMWSLFHTVTFFERALKRSGIRKANLNLQSSSAENSAVMHPMASHLSWMLPPLLKLLRAIHSIWSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQLDTSKEGYGEPNESDIRNWLKGVRDSGYNVLGLSATIGDPFFKSLDSGSVVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHEVAGSDLKVEVMEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFYRVDVLSLKDLDAFASNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTK**********MRSLLVLGTGNNLKALAAQKSVNVITNV***************************

*****SDSCPCRRVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSLPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGCGFLLSSPDFRLHACEFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDISGAILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDTSFMWSLFHTVTFFERALKRSGIRKANLNLQSSSAENSAVMHPMASHLSWMLPPLLKLLRAIHSIWSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQLDTSKEGYGEPNESDIRNWLKGVRDSGYNVLGLSATIGDPFFKSLDSGSVVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHEVAGSDLKVEVMEEKLLRDLTREICSLLSTMASSG***********************DLDAFASNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKTASPREQKQHMRSLLVLGTGNNLKALAAQKSVNVITNV***************************

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1085	2.2.26 [Sep-21-2011]
Q0WP44		1202	Protein HASTY 1 OS=Arabid	yes	no	0.971	0.876	0.669	0.0
Q54PQ8		1135	Exportin-5 OS=Dictyosteli	yes	no	0.847	0.810	0.220	5e-40
Q9HAV4		1204	Exportin-5 OS=Homo sapien	yes	no	0.910	0.820	0.204	2e-25
Q924C1		1204	Exportin-5 OS=Mus musculu	yes	no	0.920	0.829	0.211	7e-22

>sp\|Q0WP44\|HASTY_ARATH Protein HASTY 1 OS=Arabidopsis thaliana GN=HST1 PE=1 SV=1	Back alignment and function desciption

 Score = 1437 bits (3721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 718/1073 (66%), Positives = 865/1073 (80%), Gaps = 19/1073 (1%)

Query: 14   VRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGL 73
            VRREG + WQE+F  L SLS++GP+QAELV M LRWLPEDIT++N+DLEGDRRRLLLRGL
Sbjct: 121  VRREGPDRWQEIFTLLTSLSAQGPLQAELVLMTLRWLPEDITIYNDDLEGDRRRLLLRGL 180

Query: 74   TQSLPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDL 133
            TQSLPEILPLLY+LLERHFGAA+SE G Q  D+AKQHA  V A LNAI AY EWAP+PDL
Sbjct: 181  TQSLPEILPLLYNLLERHFGAAMSEAGMQHFDLAKQHADVVIACLNAIVAYTEWAPVPDL 240

Query: 134  AKYGIIHGCGFLLSSPDFRLHACEFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGE 193
            A+YGI+ GC FLLSS DFRLHACE FKLV  RK P+DAS +EF+SA+ ++FQIL   S E
Sbjct: 241  ARYGILSGCSFLLSSSDFRLHACEVFKLVCSRKRPSDASTAEFDSAISNLFQILTNASRE 300

Query: 194  FLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDTILSMYLQQMLGYFQHFK 253
            FL RS +S+  ID+++++FA  +CESM SLG++NL  I+ +  ++++YLQQMLG+FQHFK
Sbjct: 301  FLCRSSSSSSVIDDNDYDFAVCMCESMASLGSTNLQSISSDGGVMAVYLQQMLGFFQHFK 360

Query: 254  IALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDIS 313
            + LHF++LLFWL+LMRDL+ K K A     G +    D  S +VDS K + LS +NDDIS
Sbjct: 361  LGLHFEALLFWLSLMRDLLPKPKAATYPSGGGSSTGGDDSSSQVDSEKKKTLSLINDDIS 420

Query: 314  GAILDISFQRLVKREKAPG----TQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKP 369
             AILD+SFQR++K+EK P     + GPLELWSD+FEGKGDF  YRS+LLEL+K  AS+KP
Sbjct: 421  SAILDVSFQRMLKKEKVPTGIALSLGPLELWSDEFEGKGDFGPYRSKLLELIKLTASHKP 480

Query: 370  LVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQ 429
            L++  K+SERV+ +I  LL S  P Q +AVM+S Q AL+ +V+ +FDGSN+F G +SEV 
Sbjct: 481  LISSTKISERVITLIKHLLASPAPLQHVAVMDSQQLALDCIVATLFDGSNEFAGGSSEVH 540

Query: 430  LSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSL 489
             +L  IFEGLL+QLLSLKW EP L+    HYLDA+GPFLKY+PDAVG +I+KLFELLTSL
Sbjct: 541  YALRGIFEGLLQQLLSLKWNEPELMKVHVHYLDAMGPFLKYFPDAVGSLINKLFELLTSL 600

Query: 490  PFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHN 549
            P V KDP+T+++R ARLQICTSFIRIAK ++KS+LPHMK IADTM YL +EG LLRGEHN
Sbjct: 601  PHVVKDPATSTSRAARLQICTSFIRIAKAAEKSVLPHMKGIADTMGYLAKEGTLLRGEHN 660

Query: 550  LLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDTSFMW 609
            +LGEAFLVMAS+AG QQQQEVLAWLLEPLSQQW+Q EWQNNYLS+P+GLVRLCS+TSFMW
Sbjct: 661  ILGEAFLVMASSAGAQQQQEVLAWLLEPLSQQWIQPEWQNNYLSDPMGLVRLCSNTSFMW 720

Query: 610  SLFHTVTFFERALKRSGIRKANLNLQSSSAENSAVMHPMASHLSWMLPPLLKLLRAIHSI 669
            S++HTVTFFE+ALKRSG RK+NLN  S++   S   HPMA HLSWMLPPLLKLLR +HS+
Sbjct: 721  SIYHTVTFFEKALKRSGYRKSNLNTTSATTPAS---HPMAHHLSWMLPPLLKLLRVLHSL 777

Query: 670  WSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQLDTSKEGYGEPNE 729
            WSPS+ Q LP E++AAMTM+DAE++SLLGE NPK S+G   +ADGS  + +KEG  E +E
Sbjct: 778  WSPSVFQTLPPEMRAAMTMTDAERYSLLGEANPKLSKGVSVYADGS-FEGTKEGQAEASE 836

Query: 730  SDIRNWLKGVRDSGYNVLGLSATIGDPFFKSLDSGSVVVALMENIQSMEFRHIRQLVHSV 789
            SDIRNWLKG+RD GYNVLGLS TIG+ FFK LD+  V +ALMEN+QSMEFRHIR  +H+ 
Sbjct: 837  SDIRNWLKGIRDCGYNVLGLSTTIGETFFKCLDANYVAMALMENLQSMEFRHIRLFIHTF 896

Query: 790  LIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHE-----------VAGSDLK 838
            + ++VK CP DMWE WL  LL+PLFIHCQQ LSS+W  L+ E            +GSD+K
Sbjct: 897  ITYIVKSCPADMWESWLGVLLHPLFIHCQQALSSAWPGLLQEGRAKVPDLFGIQSGSDMK 956

Query: 839  VEVMEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFYRVDVLSLKDLDAFASNSM 898
            +EVMEEKLLRDLTREI +L STMAS GLN G+P +E SGH  RVD+ +L DL AF SNSM
Sbjct: 957  LEVMEEKLLRDLTREIATLFSTMASPGLNTGVPVLEHSGHVGRVDMSTLTDLHAFRSNSM 1016

Query: 899  VGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFVSKDL 958
            VGFLL HK +ALPALQI LE FTWTDGEA TKV  FC  VVLLA  +NN+ELR+FVSKD+
Sbjct: 1017 VGFLLNHKSVALPALQICLETFTWTDGEATTKVCYFCGVVVLLAKLTNNVELREFVSKDM 1076

Query: 959  FSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDAL 1018
            FSA+IRGL +ESNA+ S DLV +CREIFIY+ DRDPAPRQVLLSLPC+TP DL AFE+A 
Sbjct: 1077 FSAVIRGLGMESNAINSPDLVNICREIFIYLSDRDPAPRQVLLSLPCLTPNDLHAFEEAT 1136

Query: 1019 TKTASPREQKQHMRSLLVLGTGNNLKALAAQKSVNVITNVSTRPRSSDNAPES 1071
             KT+SP+EQKQ MRSLL+LGTGNNLKALAAQKS NVITNV+ R R   +APE+
Sbjct: 1137 AKTSSPKEQKQLMRSLLLLGTGNNLKALAAQKSQNVITNVTARTRLPASAPET 1189

Nucleocytoplasmic transporter involved in the nuclear export of microRNAs (miRNAs). Required for several miRNAs accumulation. Specifically required for miR156 accumulation which targets SPL3, SPL4 and SPL5 transcription factors. Involved in plant development through its role in miRNAs processing. Required for vegetative phase change and vegetative to reproductive phase transition. Functionally dependent on RAN1 binding. Does not seem to be involved in small interfering RNAs (siRNAs) processing.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q54PQ8\|XPO5_DICDI Exportin-5 OS=Dictyostelium discoideum GN=xpo5 PE=3 SV=1	Back alignment and function description

>sp\|Q9HAV4\|XPO5_HUMAN Exportin-5 OS=Homo sapiens GN=XPO5 PE=1 SV=1	Back alignment and function description

>sp\|Q924C1\|XPO5_MOUSE Exportin-5 OS=Mus musculus GN=Xpo5 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1085
225451181		1206	PREDICTED: protein HASTY 1 [Vitis vinife	0.986	0.887	0.762	0.0
255542432		1430	conserved hypothetical protein [Ricinus	0.953	0.723	0.763	0.0
356504082		1206	PREDICTED: protein HASTY 1-like [Glycine	0.982	0.883	0.713	0.0
356573052		1206	PREDICTED: protein HASTY 1-like [Glycine	0.982	0.883	0.709	0.0
449442883		1185	PREDICTED: protein HASTY 1-like [Cucumis	0.967	0.886	0.686	0.0
307136050		1143	hypothetical protein [Cucumis melo subsp	0.959	0.910	0.670	0.0
297833212		1202	hypothetical protein ARALYDRAFT_477786 [	0.971	0.876	0.671	0.0
357512151		1191	Exportin-5 [Medicago truncatula] gi\|3555	0.972	0.885	0.671	0.0
79393760		1202	protein HASTY [Arabidopsis thaliana] gi\|	0.971	0.876	0.669	0.0
28629393		1202	HASTY [Arabidopsis thaliana]	0.971	0.876	0.668	0.0

>gi\|225451181\|ref\|XP_002272927.1\| PREDICTED: protein HASTY 1 [Vitis vinifera] gi\|298204940\|emb\|CBI34247.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1683 bits (4359), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 829/1087 (76%), Positives = 938/1087 (86%), Gaps = 17/1087 (1%)

Query: 14   VRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGL 73
            VRREG++LWQEL PSLVSLS+ GPIQAELV+MMLRWLPEDITVHNEDLEGDRRRLLLRGL
Sbjct: 120  VRREGLSLWQELLPSLVSLSNNGPIQAELVAMMLRWLPEDITVHNEDLEGDRRRLLLRGL 179

Query: 74   TQSLPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDL 133
            TQSL EILP+LY+ LERHFGAAL+EVGRQQLD AKQHAATVTATLNA+NAYAEWAPL DL
Sbjct: 180  TQSLSEILPMLYTFLERHFGAALNEVGRQQLDAAKQHAATVTATLNAVNAYAEWAPLSDL 239

Query: 134  AKYGIIHGCGFLLSSPDFRLHACEFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGE 193
            AKYGIIHGCGFLLSSPDFRLHACEFFKLVS RK P D+S+SEF+SAM ++FQILM VS +
Sbjct: 240  AKYGIIHGCGFLLSSPDFRLHACEFFKLVSSRKRPVDSSSSEFDSAMSNIFQILMNVSRD 299

Query: 194  FLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDTILSMYLQQMLGYFQHFK 253
            FLY+S +S   IDESEFEFAEYICESMVSLG+SNL CI  + TILS YLQQMLGYFQH K
Sbjct: 300  FLYKSTSSGVVIDESEFEFAEYICESMVSLGSSNLQCITGDSTILSHYLQQMLGYFQHVK 359

Query: 254  IALHFQSLLFWLALMRDLMSKTK-VAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDI 312
            + LH+QSL FWLALMRDL+SK K VA + GDGS  NN  SGSG+VD+ K ++ SF+NDDI
Sbjct: 360  LTLHYQSLPFWLALMRDLVSKPKIVAPAAGDGSVDNNPGSGSGQVDNEKRKLQSFVNDDI 419

Query: 313  SGAILDISFQRLVKREKA-PGTQ---GPLELWSDDFEGKGDFSQYRSRLLELVKFVASNK 368
             G +LD+ FQRL+KREK  PGT    GPLELWSDDFEGKG+FSQYRSRLLEL +FVAS+K
Sbjct: 420  CGTMLDVCFQRLLKREKVLPGTSFSLGPLELWSDDFEGKGEFSQYRSRLLELARFVASDK 479

Query: 369  PLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEV 428
            PL+A +KVSER+  II SLL+S M AQD+AVMESM  ALEN+ S VFDGSN++ G +SE 
Sbjct: 480  PLIAAIKVSERIATIIKSLLLSPMSAQDIAVMESMPMALENIASVVFDGSNEYLGGSSET 539

Query: 429  QLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTS 488
            QL+L RIFEGLL+QLLSLKWTEP LV  LGHYLDALG FLKY+P+ VG VI+KLFELLTS
Sbjct: 540  QLALCRIFEGLLQQLLSLKWTEPALVEVLGHYLDALGLFLKYFPEGVGSVINKLFELLTS 599

Query: 489  LPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEH 548
            LPFV KDP T+SAR+ARLQICTSF+R+AK+++KS+LPHMK IADTM YLQREG LLR EH
Sbjct: 600  LPFVVKDPKTSSARYARLQICTSFVRLAKSAEKSLLPHMKGIADTMDYLQREGCLLRAEH 659

Query: 549  NLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDTSFM 608
            N+LGEAFLVMAS AG+QQQQEVLAWLLEPLS+QW+Q+EWQ  YLS+P GL+RLCS+TSFM
Sbjct: 660  NILGEAFLVMASVAGVQQQQEVLAWLLEPLSKQWIQVEWQQTYLSDPTGLIRLCSETSFM 719

Query: 609  WSLFHTVTFFERALKRSGIRKANLNLQSSSAENSAVMHPMASHLSWMLPPLLKLLRAIHS 668
            WS+FHTVTFFERALKRSGIRK +LN Q+SS  +   +HPM+SHLSWMLPPLLKLLRAIHS
Sbjct: 720  WSIFHTVTFFERALKRSGIRKGSLNSQNSSTASFTPLHPMSSHLSWMLPPLLKLLRAIHS 779

Query: 669  IWSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQLDTSKEGYGEPN 728
            +WSP +SQ LPGEIKAAM MS+ E+ SLLGE NPK S+    F DGSQ+DT+KE Y E +
Sbjct: 780  LWSPPVSQSLPGEIKAAMIMSEVERTSLLGEVNPKLSKSVAGFIDGSQIDTNKE-YAESH 838

Query: 729  ESDIRNWLKGVRDSGYNVLGLSATIGDPFFKSLDSGSVVVALMENIQSMEFRHIRQLVHS 788
            E+DIRNWLKG+RDSGYNVLGLS TIGD FFK LD  S+ +ALMENIQSMEFRHIRQL+HS
Sbjct: 839  ETDIRNWLKGIRDSGYNVLGLSTTIGDSFFKCLDISSLAIALMENIQSMEFRHIRQLIHS 898

Query: 789  VLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHE-----------VAGSDL 837
            VLI +VKFCP D+WE WLEKLL+PLFIH QQ LS SWS L+ E           +AGSDL
Sbjct: 899  VLIPLVKFCPSDLWEEWLEKLLHPLFIHSQQALSCSWSCLLREGRARVPDVHAILAGSDL 958

Query: 838  KVEVMEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFYRVDVLSLKDLDAFASNS 897
            KVEVMEEKLLRDLTREIC+LLS +AS GLN G+P +EQSGH  R D+ SLKDLDAFAS S
Sbjct: 959  KVEVMEEKLLRDLTREICALLSVLASPGLNTGLPSLEQSGHVSRGDMSSLKDLDAFASTS 1018

Query: 898  MVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFVSKD 957
            MVGFLLKHK LALP  QISLEAFTWTDGEAVTKVSSFC  VVLLAI S+N+ELR+FV+KD
Sbjct: 1019 MVGFLLKHKGLALPLSQISLEAFTWTDGEAVTKVSSFCGVVVLLAISSSNVELREFVAKD 1078

Query: 958  LFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDA 1017
            LF AII+GLALESNA +SADLVGLCREIF+Y+ DRDP+PRQVLLSLPCITP DLLAFE+A
Sbjct: 1079 LFYAIIQGLALESNAFVSADLVGLCREIFVYLSDRDPSPRQVLLSLPCITPYDLLAFEEA 1138

Query: 1018 LTKTASPREQKQHMRSLLVLGTGNNLKALAAQKSVNVITNVSTRPRSSDNAPESRTEEGE 1077
            L KT+SP+EQKQHM+SLL+L TGN LKALAAQKS+NVITNVSTRPRS  NA E R EEG+
Sbjct: 1139 LAKTSSPKEQKQHMKSLLLLATGNKLKALAAQKSMNVITNVSTRPRSMVNASEPRIEEGD 1198

Query: 1078 SIGLAAI 1084
            S+GLAAI
Sbjct: 1199 SVGLAAI 1205

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255542432\|ref\|XP_002512279.1\| conserved hypothetical protein [Ricinus communis] gi\|223548240\|gb\|EEF49731.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|356504082\|ref\|XP_003520828.1\| PREDICTED: protein HASTY 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|356573052\|ref\|XP_003554679.1\| PREDICTED: protein HASTY 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|449442883\|ref\|XP_004139210.1\| PREDICTED: protein HASTY 1-like [Cucumis sativus] gi\|449482912\|ref\|XP_004156441.1\| PREDICTED: protein HASTY 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|307136050\|gb\|ADN33901.1\| hypothetical protein [Cucumis melo subsp. melo]	Back alignment and taxonomy information

>gi\|297833212\|ref\|XP_002884488.1\| hypothetical protein ARALYDRAFT_477786 [Arabidopsis lyrata subsp. lyrata] gi\|297330328\|gb\|EFH60747.1\| hypothetical protein ARALYDRAFT_477786 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|357512151\|ref\|XP_003626364.1\| Exportin-5 [Medicago truncatula] gi\|355501379\|gb\|AES82582.1\| Exportin-5 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|79393760\|ref\|NP_187155.2\| protein HASTY [Arabidopsis thaliana] gi\|122229983\|sp\|Q0WP44.1\|HASTY_ARATH RecName: Full=Protein HASTY 1; AltName: Full=Protein HASTY gi\|110738356\|dbj\|BAF01105.1\| hypothetical protein [Arabidopsis thaliana] gi\|332640658\|gb\|AEE74179.1\| protein HASTY [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|28629393\|gb\|AAO34666.1\| HASTY [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1085
TAIR\|locus:2114784		1202	HST "AT3G05040" [Arabidopsis t	0.970	0.876	0.639	0.0
DICTYBASE\|DDB_G0284379		1135	xpo5 "exportin 5" [Dictyosteli	0.503	0.481	0.213	1.8e-32
UNIPROTKB\|F1MUF1		1166	XPO5 "Uncharacterized protein"	0.573	0.533	0.206	6.6e-22
UNIPROTKB\|F1NBL6		1253	XPO5 "Uncharacterized protein"	0.567	0.491	0.213	1.2e-20
RGD\|1311522		1204	Xpo5 "exportin 5" [Rattus norv	0.600	0.541	0.206	1.4e-20
MGI\|MGI:1913789		1204	Xpo5 "exportin 5" [Mus musculu	0.601	0.542	0.208	3.7e-20
UNIPROTKB\|F1PEE4		1205	XPO5 "Uncharacterized protein"	0.571	0.514	0.207	4.6e-20
UNIPROTKB\|J9P8X1		1345	XPO5 "Uncharacterized protein"	0.571	0.460	0.207	1e-19
UNIPROTKB\|F1RRK9		1206	LOC100155084 "Uncharacterized	0.369	0.332	0.212	2.5e-19
UNIPROTKB\|Q9HAV4		1204	XPO5 "Exportin-5" [Homo sapien	0.6	0.540	0.216	2.2e-18

TAIR\|locus:2114784 HST "AT3G05040" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3519 (1243.8 bits), Expect = 0., P = 0.
 Identities = 687/1074 (63%), Positives = 834/1074 (77%)

Query:    14 VRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHNXXXXXXXXXXXXXXX 73
             VRREG + WQE+F  L SLS++GP+QAELV M LRWLPEDIT++N               
Sbjct:   121 VRREGPDRWQEIFTLLTSLSAQGPLQAELVLMTLRWLPEDITIYNDDLEGDRRRLLLRGL 180

Query:    74 TQXXXXXXXXXXXXXXRHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDL 133
             TQ              RHFGAA+SE G Q  D+AKQHA  V A LNAI AY EWAP+PDL
Sbjct:   181 TQSLPEILPLLYNLLERHFGAAMSEAGMQHFDLAKQHADVVIACLNAIVAYTEWAPVPDL 240

Query:   134 AKYGIIHGCGFLLSSPDFRLHACEFFKLVSPRKGPADASASEFESAMHDVFQILMKVSGE 193
             A+YGI+ GC FLLSS DFRLHACE FKLV  RK P+DAS +EF+SA+ ++FQIL   S E
Sbjct:   241 ARYGILSGCSFLLSSSDFRLHACEVFKLVCSRKRPSDASTAEFDSAISNLFQILTNASRE 300

Query:   194 FLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDTILSMYLQQMLGYFQHFK 253
             FL RS +S+  ID+++++FA  +CESM SLG++NL  I+ +  ++++YLQQMLG+FQHFK
Sbjct:   301 FLCRSSSSSSVIDDNDYDFAVCMCESMASLGSTNLQSISSDGGVMAVYLQQMLGFFQHFK 360

Query:   254 IALHFQSLLFWLALMRDLMSKTKVA-HSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDI 312
             + LHF++LLFWL+LMRDL+ K K A + +G GS+    DS S +VDS K + LS +NDDI
Sbjct:   361 LGLHFEALLFWLSLMRDLLPKPKAATYPSGGGSSTGGDDSSS-QVDSEKKKTLSLINDDI 419

Query:   313 SGAILDISFQRLVKREKAP-G---TQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNK 368
             S AILD+SFQR++K+EK P G   + GPLELWSD+FEGKGDF  YRS+LLEL+K  AS+K
Sbjct:   420 SSAILDVSFQRMLKKEKVPTGIALSLGPLELWSDEFEGKGDFGPYRSKLLELIKLTASHK 479

Query:   369 PLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEV 428
             PL++  K+SERV+ +I  LL S  P Q +AVM+S Q AL+ +V+ +FDGSN+F G +SEV
Sbjct:   480 PLISSTKISERVITLIKHLLASPAPLQHVAVMDSQQLALDCIVATLFDGSNEFAGGSSEV 539

Query:   429 QLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTS 488
               +L  IFEGLL+QLLSLKW EP L+    HYLDA+GPFLKY+PDAVG +I+KLFELLTS
Sbjct:   540 HYALRGIFEGLLQQLLSLKWNEPELMKVHVHYLDAMGPFLKYFPDAVGSLINKLFELLTS 599

Query:   489 LPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEH 548
             LP V KDP+T+++R ARLQICTSFIRIAK ++KS+LPHMK IADTM YL +EG LLRGEH
Sbjct:   600 LPHVVKDPATSTSRAARLQICTSFIRIAKAAEKSVLPHMKGIADTMGYLAKEGTLLRGEH 659

Query:   549 NLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDTSFM 608
             N+LGEAFLVMAS+AG QQQQEVLAWLLEPLSQQW+Q EWQNNYLS+P+GLVRLCS+TSFM
Sbjct:   660 NILGEAFLVMASSAGAQQQQEVLAWLLEPLSQQWIQPEWQNNYLSDPMGLVRLCSNTSFM 719

Query:   609 WSLFHTVTFFERALKRSGIRKANLNLQSSSAENSAVMHPMASHLSWMXXXXXXXXRAIHS 668
             WS++HTVTFFE+ALKRSG RK+NLN  S++   S   HPMA HLSWM        R +HS
Sbjct:   720 WSIYHTVTFFEKALKRSGYRKSNLNTTSATTPAS---HPMAHHLSWMLPPLLKLLRVLHS 776

Query:   669 IWSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQLDTSKEGYGEPN 728
             +WSPS+ Q LP E++AAMTM+DAE++SLLGE NPK S+G   +ADGS  + +KEG  E +
Sbjct:   777 LWSPSVFQTLPPEMRAAMTMTDAERYSLLGEANPKLSKGVSVYADGS-FEGTKEGQAEAS 835

Query:   729 ESDIRNWLKGVRDSGYNVLGLSATIGDPFFKSLDSGSVVVALMENIQSMEFRHIRQLVHS 788
             ESDIRNWLKG+RD GYNVLGLS TIG+ FFK LD+  V +ALMEN+QSMEFRHIR  +H+
Sbjct:   836 ESDIRNWLKGIRDCGYNVLGLSTTIGETFFKCLDANYVAMALMENLQSMEFRHIRLFIHT 895

Query:   789 VLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHE-----------VAGSDL 837
              + ++VK CP DMWE WL  LL+PLFIHCQQ LSS+W  L+ E            +GSD+
Sbjct:   896 FITYIVKSCPADMWESWLGVLLHPLFIHCQQALSSAWPGLLQEGRAKVPDLFGIQSGSDM 955

Query:   838 KVEVMEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFYRVDVLSLKDLDAFASNS 897
             K+EVMEEKLLRDLTREI +L STMAS GLN G+P +E SGH  RVD+ +L DL AF SNS
Sbjct:   956 KLEVMEEKLLRDLTREIATLFSTMASPGLNTGVPVLEHSGHVGRVDMSTLTDLHAFRSNS 1015

Query:   898 MVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFVSKD 957
             MVGFLL HK +ALPALQI LE FTWTDGEA TKV  FC  VVLLA  +NN+ELR+FVSKD
Sbjct:  1016 MVGFLLNHKSVALPALQICLETFTWTDGEATTKVCYFCGVVVLLAKLTNNVELREFVSKD 1075

Query:   958 LFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDA 1017
             +FSA+IRGL +ESNA+ S DLV +CREIFIY+ DRDPAPRQVLLSLPC+TP DL AFE+A
Sbjct:  1076 MFSAVIRGLGMESNAINSPDLVNICREIFIYLSDRDPAPRQVLLSLPCLTPNDLHAFEEA 1135

Query:  1018 LTKTASPREQKQHMRSLLVLGTGNNLKALAAQKSVNVITNVSTRPRSSDNAPES 1071
               KT+SP+EQKQ MRSLL+LGTGNNLKALAAQKS NVITNV+ R R   +APE+
Sbjct:  1136 TAKTSSPKEQKQLMRSLLLLGTGNNLKALAAQKSQNVITNVTARTRLPASAPET 1189

GO:0005487 "nucleocytoplasmic transporter activity" evidence=NAS

GO:0005635 "nuclear envelope" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0048364 "root development" evidence=IMP

GO:0035281 "pre-miRNA export from nucleus" evidence=IMP;TAS

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

DICTYBASE\|DDB_G0284379 xpo5 "exportin 5" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MUF1 XPO5 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NBL6 XPO5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

RGD\|1311522 Xpo5 "exportin 5" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1913789 Xpo5 "exportin 5" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PEE4 XPO5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P8X1 XPO5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RRK9 LOC100155084 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9HAV4 XPO5 "Exportin-5" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0WP44	HASTY_ARATH	No assigned EC number	0.6691	0.9714	0.8768	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00031073001	SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (1207 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00034551001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (267 aa)	•		0.800
	GSVIVG00032601001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (254 aa)	•		0.800
	GSVIVG00032600001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (241 aa)	•		0.800
	GSVIVG00034073001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (992 aa)		•	0.404

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1085
pfam08389		147	pfam08389, Xpo1, Exportin 1-like protein	4e-25

>gnl\|CDD\|219817 pfam08389, Xpo1, Exportin 1-like protein	Back alignment and domain information

 Score =  101 bits (255), Expect = 4e-25
 Identities = 43/147 (29%), Positives = 64/147 (43%), Gaps = 16/147 (10%)

Query: 14  VRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVH-NEDLEGDRRRLLLRG 72
            ++E  + W   FP LVSL S  P   EL+  +L+ LPE+I       L   RR  L   
Sbjct: 16  AKQEWPSNWPTFFPDLVSLLSSSPSGCELLLRILKVLPEEIFDFSRTPLTQQRRNRLKDL 75

Query: 73  LTQSLPEILPLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPD 132
           L   +P+IL LL  +LE                    H+  ++ATL  + ++  W P+  
Sbjct: 76  LRSQMPQILELLLQILENSVS---------------AHSELLSATLKCLGSWLSWIPIGL 120

Query: 133 LAKYGIIHGCGFLLSSPDFRLHACEFF 159
           +    +++    LLS PD R  A E  
Sbjct: 121 ILNDPLLNLLFQLLSDPDLREAAVECL 147

The sequences featured in this family are similar to a region close to the N-terminus of yeast exportin 1 (Xpo1, Crm1). This region is found just C-terminal to an importin-beta N-terminal domain (pfam03810) in many members of this family. Exportin 1 is a nuclear export receptor that interacts with leucine-rich nuclear export signal (NES) sequences, and Ran-GTP, and is involved in translocation of proteins out of the nucleus. Length = 147

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1085
COG5101		1053	CRM1 Importin beta-related nuclear transport recep	100.0
KOG2020		1041	consensus Nuclear transport receptor CRM1/MSN5 (im	100.0
KOG2021		980	consensus Nuclear mRNA export factor receptor LOS1	100.0
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	99.94
PF08389		148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	99.81
KOG2022		982	consensus Nuclear transport receptor LGL2 (importi	99.75
KOG2081		559	consensus Nuclear transport regulator [Intracellul	99.6
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.43
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.97
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	98.29
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	98.26
KOG1992		960	consensus Nuclear export receptor CSE1/CAS (import	97.86
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	97.26
KOG1993		978	consensus Nuclear transport receptor KAP120 (impor	97.13
KOG1410		1082	consensus Nuclear transport receptor RanBP16 (impo	96.83
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	96.81
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	96.44
PF08506		370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	94.08
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	91.66
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	89.13
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	88.79
PTZ00429		746	beta-adaptin; Provisional	88.05
PF08767		319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	87.46
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	86.6
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	83.54

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]	Back alignment and domain information

Probab=100.00  E-value=4.6e-61  Score=533.61  Aligned_cols=533  Identities=16%  Similarity=0.194  Sum_probs=430.8

Q ss_pred             ccccchhHHHHhhhhcccchhhHHHHHHHhhcCChhHHHHHHHHHHhhhhhhccccCC-chHHHHHHHHHHHHhhhhhHH
Q 001398            3 FEKSDSCPCRRVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHNED-LEGDRRRLLLRGLTQSLPEIL   81 (1085)
Q Consensus         3 ~nKla~vlveivkrewp~~Wp~fl~eL~~l~~~~~~~~El~l~iLr~L~EDv~~~~~d-l~~~rr~~L~~~L~~~~p~I~   81 (1085)
                      .||++.++|+|+|+|||++||+|+|||++.++.|...||++|.||++|+||||+|.++ +++.|++.|++.|+.++|+||
T Consensus       115 lnkldltLvqIlKqeWP~nWP~FIpeli~~S~~s~~vCeNnmivLklLsEEvFdfSaeqmTq~k~~~LkNqm~~EF~qIF  194 (1053)
T COG5101         115 LNKLDLTLVQILKQEWPRNWPTFIPELINVSQISMEVCENNMIVLKLLSEEVFDFSAEQMTQVKKRLLKNQMKIEFPQIF  194 (1053)
T ss_pred             HHHhhhHHHHHHHHhcccccchhhHHHHhhccchHHHHhccHHHHHHhHHHHHhccHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            4899999999999999999999999999999999999999999999999999998765 899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhchHHHhhHHHHHHHHHHHHHhccccCCcchhcccChHHHH-HhhcCChhhhhHHHHHHH
Q 001398           82 PLLYSLLERHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYGIIHGC-GFLLSSPDFRLHACEFFK  160 (1085)
Q Consensus        82 ~~~~~~Le~~~~~~~~~~~~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~ll~~L-~~ll~~~~~r~~A~ecL~  160 (1085)
                      .+|.++||..-                 ..+++.|||.++..|++|||+.+|+++++++++ -++.+.|++|..+++||+
T Consensus       195 ~lc~qiLE~~~-----------------~~SLi~ATLesllrfl~wiPl~yIfeTnIieLv~~~f~s~pd~r~~tl~CLt  257 (1053)
T COG5101         195 GLCKQILEYSR-----------------DESLIEATLESLLRFLEWIPLDYIFETNIIELVLEHFNSMPDTRVATLSCLT  257 (1053)
T ss_pred             HHHHHHHHhcC-----------------ChHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence            99999999542                 247999999999999999999999999999998 489999999999999999


Q ss_pred             HHcCCCCCCCCChH-------HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhcccccc
Q 001398          161 LVSPRKGPADASAS-------EFESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAR  233 (1085)
Q Consensus       161 ~i~sRk~~~~~~~~-------lf~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~E~~y~F~k~l~e~l~~lg~~~~~~~~~  233 (1085)
                      +|++.++.|.+..+       +|+.++..+....+-...+++.-    -++.+..+..|..+++++++++-..+...+++
T Consensus       258 Ei~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~----Y~~~~~neq~Fvq~LA~fL~s~~~~~~~lLE~  333 (1053)
T COG5101         258 EIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEV----YGGMDKNEQIFVQKLAQFLSSLYEVYISLLEA  333 (1053)
T ss_pred             HHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHH----HcccChhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999865533211       34443332211101011122221    13446667789999999999999989888876


Q ss_pred             ccc--cHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhhhhc--ccccCCCCCcccCCCCCCC---Ccchhhhhhhh
Q 001398          234 EDT--ILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTK--VAHSTGDGSTVNNADSGSG---KVDSRKMRILS  306 (1085)
Q Consensus       234 ~~~--~l~~~L~~lL~~t~hpsl~ls~~~l~~W~~lLr~~~~~~~--~~~~~~~~~~~~~p~~~~~---~~~~~~~~~~~  306 (1085)
                      ++.  ++-.-...++.+.+...-.+++.|+++|+.+..+++++.+  .+..|++......|+..-+   +.+..+ ..+.
T Consensus       334 ~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s~~istnpn~~~~~-pLrk  412 (1053)
T COG5101         334 REMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGSQAISTNPNQDSTK-PLRK  412 (1053)
T ss_pred             hhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccchhccCCcchhccc-chHH
Confidence            432  4445567788899999999999999999999999877754  3445666555444432111   111112 2567


Q ss_pred             cchhhhHHHHHHHHHHHhhcccCCC--CCCCCccccccccCCcchHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHH
Q 001398          307 FLNDDISGAILDISFQRLVKREKAP--GTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAII  384 (1085)
Q Consensus       307 ~~~~~i~~~Ll~v~~~km~~~~~~~--~~~~~~e~~~~dfd~~~ef~~~R~~~~~ilr~i~~~~P~~~~~~~~~~l~~~l  384 (1085)
                      ++|.+++++|+-+++++|+|||++.  ++++ +|..+ +|-.++|-.+++|.+++++.+++++.-.++..++.+++..++
T Consensus       413 hiY~~ilsqLrlvlienMvrPEEVliVende-gEivR-efvketDtI~lYksmRevLvyLthL~v~Dte~~mi~Klarq~  490 (1053)
T COG5101         413 HIYIGILSQLRLVLIENMVRPEEVLIVENDE-GEIVR-EFVKETDTIELYKSMREVLVYLTHLIVDDTEKYMIGKLARQL  490 (1053)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcceEEEEECCC-cHHHH-HHhccccHhHHHHHHhhHHHHHhhhhhhhHHHHHHHHHHHHh
Confidence            8899999999999999999999974  3333 67777 888888889999999999999999999999999999999999


Q ss_pred             hhcccCCCChhhHHHHHhhHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHHHhccCCCChh--HHHHHHHHHH
Q 001398          385 NSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPP--LVVALGHYLD  462 (1085)
Q Consensus       385 ~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~~~~~dp~--l~s~~l~~l~  462 (1085)
                      ++.         .|.|..++++|||+.+  ++|.  +. ++.| +.+++.++..||.+|....++|+.  +.|++|++++
T Consensus       491 dg~---------EWsw~nlNtLcWAIGS--ISGa--ms-E~~E-krF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvG  555 (1053)
T COG5101         491 DGK---------EWSWNNLNTLCWAIGS--ISGA--MS-EVNE-KRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVG  555 (1053)
T ss_pred             cCC---------ccchhhHhHHHHHHhc--ccch--hh-hHHH-HHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeec
Confidence            864         7899999999999955  2221  22 1234 489999999999999999999884  7799999999


Q ss_pred             hhhhhhhcCCCchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhc--------cCccchHHHHHHHHH
Q 001398          463 ALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTS--------DKSILPHMKDIADTM  534 (1085)
Q Consensus       463 ~l~~fl~~~~~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~A~~~f~ri~~~~--------~~~l~P~~~~i~~~i  534 (1085)
                      +|+||+++||.|+++|+.|+||+|++...           .|+.|||++|+||++++        ++.-.||+..|+..+
T Consensus       556 QYpRFLkahw~FLkTVv~KLFEFMhE~HE-----------GvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl  624 (1053)
T COG5101         556 QYPRFLKAHWSFLKTVVKKLFEFMHEDHE-----------GVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNL  624 (1053)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhhhhh-----------hHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhh
Confidence            99999999999999999999999985322           36669999999999997        455688888874444


Q ss_pred             HHHHHc-cccchHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHhHHHHhhhChHhHH
Q 001398          535 AYLQRE-GRLLRGEHNLLGEAFLVMAS-AAGIQQQQEVLAWLLEPLSQQWMQLEWQ  588 (1085)
Q Consensus       535 ~~l~~~-~~L~~~e~~~L~Eal~~iss-~~~~~~q~~~l~~ll~P~~~~W~~~~~~  588 (1085)
                         ... |+|.+.++.++|||++.+++ ......+..++-.+|+-+++.|..-..+
T Consensus       625 ---~ktT~dL~pqQ~htfYeAcg~vIse~p~~~~~~rlv~dlm~Lpn~aw~niv~q  677 (1053)
T COG5101         625 ---PKTTGDLEPQQKHTFYEACGMVISEVPKTRDYKRLVLDLMDLPNSAWLNIVIQ  677 (1053)
T ss_pred             ---hhhcccCChHHHhHHHHHHhHHHhccchhhHHHHHHHHHHHhhHHHHHHHHHH
Confidence               444 68999999999999999998 4445578889999999999999744433

>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1085
3a6p_A		1204	Crystal Structure Of Exportin-5:rangtp:pre-Mirna Co		5e-20

>pdb|3A6P|A Chain A, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex Length = 1204

Back alignment and structure

Iteration: 1

Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 223/1156 (19%), Positives = 441/1156 (38%), Gaps = 163/1156 (14%) Query: 14 VRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHNXXXXXXXXXXXXXXX 73 ++RE W ++ L +LS +G Q ELV +L L ED+ Sbjct: 124 IKREWPQHWPDMLIELDTLSKQGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLT 183 Query: 74 TQXXXXXXXXXXXXXXRHFGAALSEVGRQQLDVAKQHAATVTATLNAINAYAEWAPLPDL 133 + Q A+ + A LN + Y +W + + Sbjct: 184 QNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHI 243 Query: 134 AKYGI--IHGCGFLLSSPDFRLHACEFFKLVSPRKGPADASASEF----ESAMHDVFQIL 187 + LL+ + +L A E + RKG + + AMH + Sbjct: 244 TAENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAA 303 Query: 188 MKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDTI-----LSMYL 242 G G + E + F + +C+ + +LG + + + YL Sbjct: 304 QTADG----------GGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYL 353 Query: 243 QQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKM 302 + L + H L + + W AL R ++ SR Sbjct: 354 ESFLAFTTHPSQFLRSSTQMTWGALFRH-------------------------EILSRDP 388 Query: 303 RILSFLNDDISGAILDISFQRLVKREKAPGTQGP-LELWSDDFEGKGDFSQY----RSRL 357 +L+ I L S LVK T P E DF+ DF+ + R++ Sbjct: 389 LLLA-----IIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQ 443 Query: 358 LELVKFVASNKPLVAGVKVSERVMAIINSLL-----------------ISTMPAQDLAVM 400 E+++ P + E + +++ L + ++ + Sbjct: 444 GEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQW 503 Query: 401 ESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEG--LLRQLLSLKWTEPPLVVALG 458 E+M LE+V++ +F N+ E+ ++ +G LL+ +L+ +P ++ + Sbjct: 504 EAMTLFLESVITQMFRTLNR-----EEIPVN-----DGIELLQMVLNFDTKDPLILSCVL 553 Query: 459 HYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVF----KDPSTNSARHARLQICTSFIR 514 + AL PF+ Y P+ + V SKLF +S+ F K P T + R+ R C+S I+ Sbjct: 554 TNVSALFPFVTYRPEFLPQVFSKLF---SSVTFETVEESKAPRTRAVRNVRRHACSSIIK 610 Query: 515 IAKTSDKSILPHMKDIADTMA-YLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEV-LA 572 + + + +LP+ + + + L E L + E L EA +++++ ++Q+V L Sbjct: 611 MCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLE 670 Query: 573 WLLEPLSQQWMQLEWQ--------------------NNYLSEPLGLVRLCSDTSFMWSLF 612 L+ P++ W+ + + L +P GL R + ++ Sbjct: 671 ELMAPVASIWLSQDMHRVLSDVDAFIAYVGTDQKSCDPGLEDPCGLNR----ARMSFCVY 726 Query: 613 HTVTFFERALKRSGIRKANLN---LQSSSAENSAVMHPMASHLSWMXXXXXXXXRAIHSI 669 + +R + + +A + +S+ N +P + + R +++ Sbjct: 727 SILGVVKRTCWPTDLEEAKAGGFVVGYTSSGNPIFRNPCTEQILKLLDNLLALIRTHNTL 786 Query: 670 WSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQLDTSKEGYGEPNE 729 ++P + + A+ M DAE+ ++LG P + D T E Sbjct: 787 YAPEMLAKMAEPFTKALDMLDAEKSAILGLPQP-----LLELNDSPVFKTVLE------- 834 Query: 730 SDIRNWLKGVRDSGYNVLGLSA-TIGDPFFKSLD-SGSVVVALMENIQSMEFRHIRQLVH 787 ++ + + ++ +++LG + ++ F+ D + ++ + N+ ++ +R ++ Sbjct: 835 -RMQRFFSTLYENCFHILGKAGPSMQQDFYTVEDLATQLLSSAFVNLNNIPDYRLRPMLR 893 Query: 788 SVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHE--VAGSDLKV------ 839 + +V FCP + +E + +L PLF + LS W + + G D Sbjct: 894 VFVKPLVLFCPPEHYEALVSPILGPLFTYLHMRLSQKWQVINQRSLLCGEDEAADENPES 953 Query: 840 -EVMEEKLLRDLTREICSLLSTMASS---GLNNGIPPIEQSGHFYRVDVLSLKDLDAFAS 895 E++EE+L+R LTRE+ L++ S ++ PP + ++ A A Sbjct: 954 QEMLEEQLVRMLTREVMDLITVCCVSKKGADHSSAPPADGDDEEMMATEVT---PSAMAE 1010 Query: 896 NSMVG-FLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFV 954 + +G L+KH+D+ L + + W D + + +S +L + S + L V Sbjct: 1011 LTDLGKCLMKHEDVCTALLITAFNSLAWKDTLSCQRTTSQLCWPLLKQVLSGTL-LADAV 1069 Query: 955 SKDLFSAIIRGLALE-SNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLA 1013 + LF+++++GL + + A LV L +I+ + R R V+ +P I L Sbjct: 1070 TW-LFTSVLKGLQMHGQHDGCMASLVHLAFQIYEALRPRYLEIRAVMEQIPEIQKDSLDQ 1128 Query: 1014 FE-----DALTKTASPREQKQHMRSLLVLGTGNNLKALAAQKSVNVITNVSTRPRSSDNA 1068 F+ +L K A R + Q R L+ G +K V+ I N+ + + + Sbjct: 1129 FDCKLLNPSLQKVADKRRKDQFKR--LIAGCIGKPLGEQFRKEVH-IKNLPSLFKKTKPM 1185 Query: 1069 PESRTEEGESIGLAAI 1084 E+ + + GLA I Sbjct: 1186 LETEVLDNDGGGLATI 1201

PyMOL of 3a6p

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1085
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	1e-149
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	2e-26
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	2e-24
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	8e-22
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204	Back alignment and structure

 Score =  476 bits (1224), Expect = e-149
 Identities = 215/1150 (18%), Positives = 437/1150 (38%), Gaps = 133/1150 (11%)

Query: 5    KSDSCPCRRVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHNEDLEGD 64
                     ++RE    W ++   L +LS +G  Q ELV  +L  L ED+    + L   
Sbjct: 115  ALSRIVVEMIKREWPQHWPDMLIELDTLSKQGETQTELVMFILLRLAEDVV-TFQTLPPQ 173

Query: 65   RRRLLLRGLTQSLPEILPLLYSLLERHFGAALS-EVGRQQLDVAKQHAATVTATLNAINA 123
            RRR + + LTQ++  I   L + L+ +       +    Q   A+ +     A LN +  
Sbjct: 174  RRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAG 233

Query: 124  YAEWAPLPDLAKYGI--IHGCGFLLSSPDFRLHACEFFKLVSPRKGPADASASEFESAMH 181
            Y +W  +  +       +     LL+  + +L A E   +   RKG  +           
Sbjct: 234  YIDWVSMSHITAENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGD 293

Query: 182  DVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAREDTI---- 237
                 ++              G + E  + F + +C+ + +LG      +  +  +    
Sbjct: 294  VAMHYILS------AAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPS 347

Query: 238  -LSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGK 296
                YL+  L +  H    L   + + W AL R                          +
Sbjct: 348  NFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH-------------------------E 382

Query: 297  VDSRKMRILSFLNDDISGAILDISFQRLVKREKAPGTQGP-LELWSDDFEGKGD----FS 351
            + SR   +L+ +        L  S   LVK      T  P  E    DF+   D    F+
Sbjct: 383  ILSRDPLLLAIIPK-----YLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFN 437

Query: 352  QYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAV------------ 399
              R++  E+++      P  +     E +   +++ L +       AV            
Sbjct: 438  SSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFS 497

Query: 400  -----MESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLV 454
                  E+M   LE+V++ +F   N+        ++ ++   E LL+ +L+    +P ++
Sbjct: 498  PSFVQWEAMTLFLESVITQMFRTLNRE-------EIPVNDGIE-LLQMVLNFDTKDPLIL 549

Query: 455  VALGHYLDALGPFLKYYPDAVGGVISKLFELLT-SLPFVFKDPSTNSARHARLQICTSFI 513
              +   + AL PF+ Y P+ +  V SKLF  +T       K P T + R+ R   C+S I
Sbjct: 550  SCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSII 609

Query: 514  RIAKTSDKSILPHMKDIADTMA-YLQREGRLLRGEHNLLGEAFLVMASAAG-IQQQQEVL 571
            ++ +   + +LP+   + + +   L  E  L + E   L EA +++++     ++Q+  L
Sbjct: 610  KMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFL 669

Query: 572  AWLLEPLSQQWMQLEWQNNYLSEPLGLVRLC-----------------SDTSFMWSLFHT 614
              L+ P++  W+  +     LS+    +                    +     + ++  
Sbjct: 670  EELMAPVASIWLSQDMH-RVLSDVDAFIAYVGTDQKSCDPGLEDPCGLNRARMSFCVYSI 728

Query: 615  VTFFERALKRSGIRKANLN---LQSSSAENSAVMHPMASHLSWMLPPLLKLLRAIHSIWS 671
            +   +R    + + +A      +  +S+ N    +P    +  +L  LL L+R  +++++
Sbjct: 729  LGVVKRTCWPTDLEEAKAGGFVVGYTSSGNPIFRNPCTEQILKLLDNLLALIRTHNTLYA 788

Query: 672  PSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQLDTSKEGYGEPNESD 731
            P +   +      A+ M DAE+ ++LG   P              L+ +     +     
Sbjct: 789  PEMLAKMAEPFTKALDMLDAEKSAILGLPQPL-------------LELNDSPVFKTVLER 835

Query: 732  IRNWLKGVRDSGYNVLGLSAT-IGDPFFKSLD-SGSVVVALMENIQSMEFRHIRQLVHSV 789
            ++ +   + ++ +++LG +   +   F+   D +  ++ +   N+ ++    +R ++   
Sbjct: 836  MQRFFSTLYENCFHILGKAGPSMQQDFYTVEDLATQLLSSAFVNLNNIPDYRLRPMLRVF 895

Query: 790  LIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHE---------VAGSDLKVE 840
            +  +V FCP + +E  +  +L PLF +    LS  W  +               +    E
Sbjct: 896  VKPLVLFCPPEHYEALVSPILGPLFTYLHMRLSQKWQVINQRSLLCGEDEAADENPESQE 955

Query: 841  VMEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFYRVDVLSLKDLDAFASNS-MV 899
            ++EE+L+R LTRE+  L++    S           +       + +     A A  + + 
Sbjct: 956  MLEEQLVRMLTREVMDLITVCCVSKKGADHSSAPPADGDDEEMMATEVTPSAMAELTDLG 1015

Query: 900  GFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFVSKDLF 959
              L+KH+D+    L  +  +  W D  +  + +S     +L  + S    L       LF
Sbjct: 1016 KCLMKHEDVCTALLITAFNSLAWKDTLSCQRTTSQLCWPLLKQVLSG--TLLADAVTWLF 1073

Query: 960  SAIIRGLALE-SNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDAL 1018
            +++++GL +   +    A LV L  +I+  +  R    R V+  +P I    L  F+  L
Sbjct: 1074 TSVLKGLQMHGQHDGCMASLVHLAFQIYEALRPRYLEIRAVMEQIPEIQKDSLDQFDCKL 1133

Query: 1019 TKT----ASPREQKQHMRSLLVLGTGNNLKALAAQKSVNVITNVSTRPRSSDNAPESRTE 1074
                    + + +K   + L+    G  L      +    I N+ +  + +    E+   
Sbjct: 1134 LNPSLQKVADKRRKDQFKRLIAGCIGKPLGEQF--RKEVHIKNLPSLFKKTKPMLETEVL 1191

Query: 1075 EGESIGLAAI 1084
            + +  GLA I
Sbjct: 1192 DNDGGGLATI 1201

PyMOL of 3a6p

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1085
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	100.0
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	100.0
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	100.0
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	100.0
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	100.0
2x19_B		963	Importin-13; nuclear transport, protein transport;	100.0
2x1g_F		971	Cadmus; transport protein, developmental protein,	100.0
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	99.67
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	99.57
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	99.52
1qgr_A		876	Protein (importin beta subunit); transport recepto	99.47
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	98.82
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	97.85
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.59
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	97.12
1qgr_A		876	Protein (importin beta subunit); transport recepto	96.81
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	96.22
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	96.01
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	95.41
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	95.25
2x19_B		963	Importin-13; nuclear transport, protein transport;	90.01
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	87.9
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	87.77
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	87.15
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	86.78
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	80.84

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}	Back alignment and structure

Probab=100.00  E-value=8.5e-126  Score=1247.18  Aligned_cols=1005  Identities=21%  Similarity=0.323  Sum_probs=783.6

Q ss_pred             ccccchhHHHHhhhhcccchhhHHHHHHHhhcCChhHHHHHHHHHHhhhhhhccccCCchHHHHHHHHHHHHhhhhhHHH
Q 001398            3 FEKSDSCPCRRVRREGINLWQELFPSLVSLSSKGPIQAELVSMMLRWLPEDITVHNEDLEGDRRRLLLRGLTQSLPEILP   82 (1085)
Q Consensus         3 ~nKla~vlveivkrewp~~Wp~fl~eL~~l~~~~~~~~El~l~iLr~L~EDv~~~~~dl~~~rr~~L~~~L~~~~p~I~~   82 (1085)
                      .||+++++++|+|++||+.||+|+++|+++++.++.++|++|.+|+.|+||++.+ +++...|++++++.|+.++|.||+
T Consensus       113 r~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~~~~~~e~~L~iL~~L~Eev~~~-~~~~~~r~~~l~~~l~~~~~~I~~  191 (1204)
T 3a6p_A          113 KDALSRIVVEMIKREWPQHWPDMLIELDTLSKQGETQTELVMFILLRLAEDVVTF-QTLPPQRRRDIQQTLTQNMERIFS  191 (1204)
T ss_dssp             HHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTS-CCSCHHHHHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcccchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHccc-cchHHHHHHHHHHHHHHHHHHHHH
Confidence            3799999999999999999999999999999889899999999999999999984 677779999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhh-hhchHHHhhHHHHHHHHHHHHHhccccCCcchhcccC--hHHHHHhhcCChhhhhHHHHHH
Q 001398           83 LLYSLLERHFGAALSEVG-RQQLDVAKQHAATVTATLNAINAYAEWAPLPDLAKYG--IIHGCGFLLSSPDFRLHACEFF  159 (1085)
Q Consensus        83 ~~~~~Le~~~~~~~~~~~-~~~~~~a~~~~~~v~~aL~tl~~yl~Wip~~~i~~~~--ll~~L~~ll~~~~~r~~A~ecL  159 (1085)
                      +++.++++++..+..++. .++.+.+..+..++.++|+|++.|++|+|++.+++.+  +++.++.+++++++|..|++||
T Consensus       192 ~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~~~lr~~A~ecL  271 (1204)
T 3a6p_A          192 FLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNEQELQLGAAECL  271 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGCTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999887655433221 2223334456779999999999999999999998764  9999888899999999999999


Q ss_pred             HHHcCCCCCCCCChHHH----HHHHHHHHHHHHHHHHHHHhhcCCCCCCCChhhhHHHHHHHHHHHHhhhhhcccccc--
Q 001398          160 KLVSPRKGPADASASEF----ESAMHDVFQILMKVSGEFLYRSGTSAGAIDESEFEFAEYICESMVSLGTSNLHCIAR--  233 (1085)
Q Consensus       160 ~~i~sRk~~~~~~~~lf----~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~E~~y~F~k~l~e~l~~lg~~~~~~~~~--  233 (1085)
                      .+|++|+++++++.+++    +..+..++..    +.      ..++.+++|++|+|.|++|++++++|.++..++++  
T Consensus       272 ~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~----~~------~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~  341 (1204)
T 3a6p_A          272 LIAVSRKGKLEDRKPLMVLFGDVAMHYILSA----AQ------TADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADS  341 (1204)
T ss_dssp             HHHHTCCSCHHHHGGGGGGGSHHHHHHHHHH----HH------TCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHhCCCChhhHHHHHHHHhhHHHHHHHHH----hh------cCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999986543333322    1222333321    11      23455678999999999999999999887776653  


Q ss_pred             ---ccccHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHh-hhhcccccCCCCCcccCCCCCCCCcchhhhhhhhcch
Q 001398          234 ---EDTILSMYLQQMLGYFQHFKIALHFQSLLFWLALMRDLM-SKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLN  309 (1085)
Q Consensus       234 ---~~~~l~~~L~~lL~~t~hpsl~ls~~~l~~W~~lLr~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  309 (1085)
                         ....+..|+++|+.+++||+..++..+++||..++++.. +..+                               ..
T Consensus       342 ~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~-------------------------------~~  390 (1204)
T 3a6p_A          342 DVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDP-------------------------------LL  390 (1204)
T ss_dssp             SCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCH-------------------------------HH
T ss_pred             cccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccH-------------------------------HH
Confidence               345789999999999999999999999999999998721 1100                               12


Q ss_pred             hhhHHHHHHHH---HHHhhcccCCCCCCCCccccccccCCcch----HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHH
Q 001398          310 DDISGAILDIS---FQRLVKREKAPGTQGPLELWSDDFEGKGD----FSQYRSRLLELVKFVASNKPLVAGVKVSERVMA  382 (1085)
Q Consensus       310 ~~i~~~Ll~v~---~~km~~~~~~~~~~~~~e~~~~dfd~~~e----f~~~R~~~~~ilr~i~~~~P~~~~~~~~~~l~~  382 (1085)
                      .++++.|++++   +.||.+|++..  .++.++..+|||+++|    |++||+++.++++.++++.|..++.++.+++..
T Consensus       391 ~~~l~~Ll~vl~~~l~k~~yp~~~~--~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~  468 (1204)
T 3a6p_A          391 LAIIPKYLRASMTNLVKMGFPSKTD--SPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKY  468 (1204)
T ss_dssp             HHHHHHHHHHHHHHHSCCCCSSCCS--STHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCccccC--CcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            47899999999   55665554321  1113345567777644    699999999999999999999999999999977


Q ss_pred             HHhhcc-----------------cCCCChhhHHHHHhhHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHHHhc
Q 001398          383 IINSLL-----------------ISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLS  445 (1085)
Q Consensus       383 ~l~~~~-----------------~~~~~s~~~~~~ea~~~~leav~~~~~~~~~~~~~~~~~~~~~l~~~l~~Ll~~ll~  445 (1085)
                      .+.+..                 .|+..++.|..||++..++||++++++++...   ++.+.     ..+.++++.|++
T Consensus       469 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~---~~l~~-----~~~~~Ll~~ll~  540 (1204)
T 3a6p_A          469 QLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNR---EEIPV-----NDGIELLQMVLN  540 (1204)
T ss_dssp             HHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCT---TCCCH-----HHHHHHHHHHHH
T ss_pred             HHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhccccc---ccccH-----HHHHHHHHHHHh
Confidence            766421                 12455678999999999999999999886531   11111     247789999999


Q ss_pred             cCCCChhHHHHHHHHHHhhhhhhhcCCCchHHHHHHHHHhhccC-CCCCCCCCchHHHHHHHHHHHHHHHHHHhccCccc
Q 001398          446 LKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSL-PFVFKDPSTNSARHARLQICTSFIRIAKTSDKSIL  524 (1085)
Q Consensus       446 ~~~~dp~l~s~~l~~l~~l~~fl~~~~~~l~~VL~klfe~l~~~-p~~~~~~~~~~~~~vR~~A~~~f~ri~~~~~~~l~  524 (1085)
                      ++++||.++..+++++++|++|+.++|+++++||++||..+... |+..++++++++|++|++||++|.+||+.+++.+.
T Consensus       541 ~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~  620 (1204)
T 3a6p_A          541 FDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVL  620 (1204)
T ss_dssp             CCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHG
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            89999999999999999999999999999999999999988753 44456677889999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHccc-cchHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHhHHHHhhhChHhHHhhhcCChHHHHHhc
Q 001398          525 PHMKDIADTMAYLQREGR-LLRGEHNLLGEAFLVMAS-AAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLC  602 (1085)
Q Consensus       525 P~~~~i~~~i~~l~~~~~-L~~~e~~~L~Eal~~iss-~~~~~~q~~~l~~ll~P~~~~W~~~~~~~~~l~~~~~f~~~~  602 (1085)
                      ||+++|.+.+.+++.+++ ++.+|++.||||++++++ ..+.++|.++++++++|+.+.|.+++|++ ++++|.+|++++
T Consensus       621 p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~~~~~~-~~s~~~~f~~~~  699 (1204)
T 3a6p_A          621 PNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLSQDMHR-VLSDVDAFIAYV  699 (1204)
T ss_dssp             GGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSCHHHHH-HHHCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHccHHHHH-hhcCHHHHHHHh
Confidence            999999999999999888 999999999999999986 56788999999999999999999999997 999999999999


Q ss_pred             cCc-------------cchhhhHHHHHHHHHHhhhhcccccc---------ccccCCCCCCcccccchhhhhhhhhhhHH
Q 001398          603 SDT-------------SFMWSLFHTVTFFERALKRSGIRKAN---------LNLQSSSAENSAVMHPMASHLSWMLPPLL  660 (1085)
Q Consensus       603 g~~-------------~~~~~~~~~v~~~~~~lkr~~~~~~~---------~~s~~~~~~~~~~~~p~~~~~~~iLP~ll  660 (1085)
                      |..             ..|+.++++++.+++++||++++..+         +++  .++++|.++||+++++++|||+|+
T Consensus       700 G~~~~~~~~~~~d~~~~~r~~l~~~~~~l~~~l~r~~~~~~~~~~~~~gf~~~~--~~~~~p~~~~p~~~~i~~ilP~ll  777 (1204)
T 3a6p_A          700 GTDQKSCDPGLEDPCGLNRARMSFCVYSILGVVKRTCWPTDLEEAKAGGFVVGY--TSSGNPIFRNPCTEQILKLLDNLL  777 (1204)
T ss_dssp             TSSCC--CTTCCTHHHHHHHHHHHHHHHHHHHHHHCCCCSSHHHHHHTTCEEEE--CSSCCEEECCTTHHHHHHHHHHHH
T ss_pred             CCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHhcCCCChhhhhcCCceecc--CCCCCccccCchHHHHHHHhHHHH
Confidence            921             23799999999999999998654321         111  136788999999999999999999


Q ss_pred             HHHHHHHhccCccccccCcHHHHHHcccCHHHHhhhcCCCCCCcccccccccCCCCCCCCcCCCCCCchHHHHHHHHHHH
Q 001398          661 KLLRAIHSIWSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQLDTSKEGYGEPNESDIRNWLKGVR  740 (1085)
Q Consensus       661 ~Llr~~h~l~~P~~~~~l~~~~~~~~~~~~~Er~~~lg~~~~~~sk~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~r  740 (1085)
                      +|+|++|++|+|++|+++|++|+++++|+++||+|++|.+.  .++   +|++.+        +.....+++|+|++.+|
T Consensus       778 ~Ll~~~~~l~~p~~~~~l~~~~~~~~~~~~~er~~~~g~~~--~~~---~~~~~~--------~~~~~~~~l~~~~~~~r  844 (1204)
T 3a6p_A          778 ALIRTHNTLYAPEMLAKMAEPFTKALDMLDAEKSAILGLPQ--PLL---ELNDSP--------VFKTVLERMQRFFSTLY  844 (1204)
T ss_dssp             HHHHHHHHTTSHHHHTTSCGGGTTTTSCCHHHHHHHTCCCC--CCC---CTTCCC--------SCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcHhhhhcCHHHHHHHhccHHHHHHhcCCCc--ccc---cccccC--------CCcCcHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999876  233   244432        12467899999999999


Q ss_pred             HHHHHHHHhhh-cCCcccccCCCchH-HHHHHhcCCCCCccccHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHH
Q 001398          741 DSGYNVLGLSA-TIGDPFFKSLDSGS-VVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQ  818 (1085)
Q Consensus       741 e~~y~ilg~~~-~l~~~fy~~~~l~~-l~~al~~~~~~l~~~~lr~ll~~~~~plv~~CP~~~~~~~l~plL~~l~~~~~  818 (1085)
                      |+||+++|+++ ++|++||++++++. +.+|+|+++++||+||||.+||++++|+|++||+++|++|+.|+|+|+|.+|+
T Consensus       845 e~~y~~lg~~~~~l~~~fy~~~~l~~~l~~~~f~~l~~~~~~~l~~li~~~~~p~i~~CP~~~~~~~l~plL~~lf~~~~  924 (1204)
T 3a6p_A          845 ENCFHILGKAGPSMQQDFYTVEDLATQLLSSAFVNLNNIPDYRLRPMLRVFVKPLVLFCPPEHYEALVSPILGPLFTYLH  924 (1204)
T ss_dssp             HHHHHHHHHHHHHHCTTTTTSTTHHHHHHHHTTSSTTTSCHHHHHHHHHHTHHHHHHTCCGGGTTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccccccCCcchHHHHHHHHHhcchhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999995 99999999999987 99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhc---------cCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccc--cccc
Q 001398          819 QVLSSSWSSLMHEV---------AGSDLKVEVMEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFYRVD--VLSL  887 (1085)
Q Consensus       819 ~rL~~~W~~i~~~~---------~~~~~~~E~~eE~llr~LTr~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  887 (1085)
                      +||+++|..+.+++         +++++++||+||++||+|||++++++.+++.++.+ +.+  ..+|+.+.||  +.+.
T Consensus       925 ~~L~~~W~~i~~~~~~~~~~~~~~~~~~~~E~~~e~llr~lTr~~~~ll~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~ 1001 (1204)
T 3a6p_A          925 MRLSQKWQVINQRSLLCGEDEAADENPESQEMLEEQLVRMLTREVMDLITVCCVSKKG-ADH--SSAPPADGDDEEMMAT 1001 (1204)
T ss_dssp             HHHHHHHHHHHTC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHBC-------------------------
T ss_pred             HHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCc--cccccccccccccccc
Confidence            99999999999851         24679999999999999999999999999887632 211  2234443332  2222


Q ss_pred             c--cchhhhhhhhHHHHhcCcCchHHHHHHHHhhhcccchh-hhHHHHHhHHHHHHhhhhccchhhhHHHHHHHHHHHHH
Q 001398          888 K--DLDAFASNSMVGFLLKHKDLALPALQISLEAFTWTDGE-AVTKVSSFCSAVVLLAIQSNNIELRQFVSKDLFSAIIR  964 (1085)
Q Consensus       888 ~--~~~~~~~~~l~~~~l~~~~~~~~~l~~~~~~l~w~Dt~-~~~ka~~~~~~l~~~~~~~~~~~l~~~~~~~~~~a~l~  964 (1085)
                      +  +......++|++|+|.|+++++|+|.+|+++|+|+||+ |+.+|+.||+++++..+.  +..+.+. +.++|+++|+
T Consensus      1002 ~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~~~~~l~~~D~~~~~~~~~~~~~~~v~~~~~--~~~~~~~-~~~l~~~vl~ 1078 (1204)
T 3a6p_A         1002 EVTPSAMAELTDLGKCLMKHEDVCTALLITAFNSLAWKDTLSCQRTTSQLCWPLLKQVLS--GTLLADA-VTWLFTSVLK 1078 (1204)
T ss_dssp             --------CBCHHHHHHHSSHHHHHHHHHHHHHHTTSSCHHHHHHHHHHTHHHHHTTSCS--SCCCHHH-HHHHHHHHHH
T ss_pred             cccccchhhcchHHHHHhcCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHhc--ccCchHH-HHHHHHHHHH
Confidence            1  22244568999999999999999999999999999999 899999999999987653  3345565 9999999999


Q ss_pred             HhccCch-HhhHHHHHHHHHHHHHhcCCCCchHHHHHHhCCCCCHHHHHHHHHHHhcCC----ChHHHHHHHHHHHHhhc
Q 001398          965 GLALESN-AVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKTA----SPREQKQHMRSLLVLGT 1039 (1085)
Q Consensus       965 ~L~~~~~-~~~~~~l~~L~~~iy~~l~~~~~~~~~vL~~lP~i~~~~l~~f~~~l~~~~----s~K~qr~~~k~ll~~~~ 1039 (1085)
                      ||+.+++ +++++|+++|++.||+.|++++++||+||++||||+++++++|+++|.++.    ++|+||++|||||++++
T Consensus      1079 ~l~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~~vl~~lP~i~~~~~~~f~~~l~~~~~~~~~~k~qr~~~~~ll~~~~ 1158 (1204)
T 3a6p_A         1079 GLQMHGQHDGCMASLVHLAFQIYEALRPRYLEIRAVMEQIPEIQKDSLDQFDCKLLNPSLQKVADKRRKDQFKRLIAGCI 1158 (1204)
T ss_dssp             HHHHSCSCHHHHHHHHHHHHHHHHHSTTTCSTHHHHHTTSSSCCHHHHHHHHHHSSCC----------------------
T ss_pred             HHHhcCCCchhHHHHHHHHHHHHHHhCCCCccHHHHHHhCCCCCHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHhc
Confidence            9998885 999999999999999999999999999999999999999999999997644    59999999999999999


Q ss_pred             CCchHhhhhhhcccc-ccccCCCCCCCCCCCCCCcccCCccccccC
Q 001398         1040 GNNLKALAAQKSVNV-ITNVSTRPRSSDNAPESRTEEGESIGLAAI 1084 (1085)
Q Consensus      1040 g~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1084 (1085)
                      |+++++   |++++| |.|+|+..+.++++.+...-|.+..||+.|
T Consensus      1159 g~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 1201 (1204)
T 3a6p_A         1159 GKPLGE---QFRKEVHIKNLPSLFKKTKPMLETEVLDNDGGGLATI 1201 (1204)
T ss_dssp             ----------------------------------------------
T ss_pred             CCcHHH---hhcccccccCCCCCCCCCCCCCcCCCCCCccccHHHh
Confidence            999875   788888 999999976656665444445555599876

PyMOL of 3a6p

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1085
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.42
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.9
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	98.87
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.66
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.68
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.48
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	96.73
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	96.43
d1b3ua_		588	Constant regulatory domain of protein phosphatase	94.57
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	94.15
d1b3ua_		588	Constant regulatory domain of protein phosphatase	93.74
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	86.9

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=4.2e-14  Score=178.86  Aligned_cols=199  Identities=16%  Similarity=0.217  Sum_probs=145.2

Q ss_pred             HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhhcccCCCChhhHHHHHhhHHHHHHHHHhhhcCCCCCCCCChHHHH
Q 001398          351 SQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQL  430 (1085)
Q Consensus       351 ~~~R~~~~~ilr~i~~~~P~~~~~~~~~~l~~~l~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~~~~~~~~~~~~~  430 (1085)
                      ++.|+....++..++...+...+..+...+...+.++        .+...|+....+.++..|+.+..            
T Consensus       371 ~~~r~~a~~~L~~l~~~~~~~il~~~l~~l~~~l~s~--------~~~~reaa~~alg~i~eg~~~~~------------  430 (888)
T d1qbkb_         371 WNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHH--------EWVVKESGILVLGAIAEGCMQGM------------  430 (888)
T ss_dssp             CSSHHHHHHHSTTTTTTCCSSSHHHHHHHHHHTTTSS--------SHHHHHHHHHHHHHHTTTSHHHH------------
T ss_pred             hhHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHhhccc--------hhHHHHHHHHHhhhhhhhHHHHh------------
Confidence            6789998999999998888888888777777666542        45677888888877776654421            


Q ss_pred             HHHHHHHHHHHHHhc-cCCCChhHHHHHHHHHHhhhhhhhcCC--CchHHHHHHHHHhhccCCCCCCCCCchHHHHHHHH
Q 001398          431 SLSRIFEGLLRQLLS-LKWTEPPLVVALGHYLDALGPFLKYYP--DAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQ  507 (1085)
Q Consensus       431 ~l~~~l~~Ll~~ll~-~~~~dp~l~s~~l~~l~~l~~fl~~~~--~~l~~VL~klfe~l~~~p~~~~~~~~~~~~~vR~~  507 (1085)
                        .+.+.+++..++. .+..+|.++...+++++.|+.++....  .++..+++.+++.+.       +    ..+.||..
T Consensus       431 --~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~-------d----~~~~V~~~  497 (888)
T d1qbkb_         431 --IPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL-------D----SNKRVQEA  497 (888)
T ss_dssp             --TTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHS-------S----SCHHHHHH
T ss_pred             --cccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhc-------C----CCHHHHHH
Confidence              1112233333332 367899999999999999998775442  356667777766553       1    23579999


Q ss_pred             HHHHHHHHHHhccCccchHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHhHHHHhhhCh
Q 001398          508 ICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQ-QQQEVLAWLLEPLSQQWMQ  584 (1085)
Q Consensus       508 A~~~f~ri~~~~~~~l~P~~~~i~~~i~~l~~~~~L~~~e~~~L~Eal~~iss~~~~~-~q~~~l~~ll~P~~~~W~~  584 (1085)
                      ||.+|..++......+.||++.+.+.+...+.  +.....+..+++++..++...+.. .+..+++.++.++...|..
T Consensus       498 a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~--~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~  573 (888)
T d1qbkb_         498 ACSAFATLEEEACTELVPYLAYILDTLVFAFS--KYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNM  573 (888)
T ss_dssp             HHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTT--TCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999887776554  344566778899999887633332 4567889999999998863

PyMOL of d1qbkb_

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure